Query 012357
Match_columns 465
No_of_seqs 474 out of 2437
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 01:47:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02318 phosphoribulokinase/u 100.0 1E-101 2E-106 819.1 25.7 456 1-457 1-456 (656)
2 COG1135 AbcC ABC-type metal io 100.0 2.3E-43 5.1E-48 347.5 12.6 257 41-341 5-299 (339)
3 COG1126 GlnQ ABC-type polar am 100.0 6.9E-38 1.5E-42 295.6 13.9 204 40-268 5-239 (240)
4 TIGR02314 ABC_MetN D-methionin 100.0 3E-32 6.5E-37 279.1 17.1 258 40-340 4-301 (343)
5 COG1127 Ttg2A ABC-type transpo 100.0 5.9E-31 1.3E-35 252.0 9.7 190 39-236 10-234 (263)
6 COG3638 ABC-type phosphate/pho 100.0 2E-30 4.4E-35 247.7 11.5 188 40-235 6-235 (258)
7 COG3842 PotA ABC-type spermidi 100.0 3.4E-30 7.3E-35 262.4 13.6 188 40-235 8-224 (352)
8 COG1120 FepC ABC-type cobalami 100.0 4.6E-30 9.9E-35 251.4 12.4 189 40-236 5-227 (258)
9 COG1124 DppF ABC-type dipeptid 100.0 8E-30 1.7E-34 244.9 13.8 188 41-236 7-230 (252)
10 COG1117 PstB ABC-type phosphat 100.0 3.1E-30 6.8E-35 243.1 10.6 201 39-266 9-249 (253)
11 COG4598 HisP ABC-type histidin 100.0 2.2E-30 4.8E-35 238.3 7.7 203 39-266 8-253 (256)
12 COG1125 OpuBA ABC-type proline 100.0 1.1E-29 2.3E-34 244.9 12.7 204 40-272 4-239 (309)
13 PRK11153 metN DL-methionine tr 100.0 5.1E-29 1.1E-33 255.5 15.8 259 40-341 4-302 (343)
14 COG3839 MalK ABC-type sugar tr 100.0 3.2E-29 7E-34 254.0 14.0 188 40-235 6-221 (338)
15 COG1136 SalX ABC-type antimicr 100.0 2.1E-28 4.5E-33 235.5 14.6 179 41-227 5-221 (226)
16 COG2884 FtsE Predicted ATPase 100.0 6.5E-29 1.4E-33 230.4 9.7 182 41-230 5-219 (223)
17 COG1118 CysA ABC-type sulfate/ 100.0 6.2E-29 1.3E-33 245.1 9.5 189 40-236 5-226 (345)
18 COG1131 CcmA ABC-type multidru 100.0 4.7E-28 1E-32 243.3 14.6 188 40-235 7-224 (293)
19 COG1116 TauB ABC-type nitrate/ 100.0 6E-28 1.3E-32 233.4 14.0 178 39-224 5-207 (248)
20 PRK13537 nodulation ABC transp 100.0 9.8E-28 2.1E-32 242.4 15.0 189 40-236 10-226 (306)
21 PRK11432 fbpC ferric transport 99.9 2.6E-27 5.6E-32 243.5 14.6 188 40-235 9-224 (351)
22 PRK13536 nodulation factor exp 99.9 5E-27 1.1E-31 240.5 16.2 189 40-236 44-260 (340)
23 COG4555 NatA ABC-type Na+ tran 99.9 3.2E-28 6.9E-33 227.7 6.6 185 42-235 6-220 (245)
24 COG1122 CbiO ABC-type cobalt t 99.9 3.6E-27 7.9E-32 229.5 14.1 190 39-236 5-227 (235)
25 TIGR03265 PhnT2 putative 2-ami 99.9 3.4E-27 7.3E-32 242.9 14.6 189 40-236 7-223 (353)
26 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 4.2E-27 9.1E-32 229.7 14.4 188 39-235 6-225 (254)
27 PRK11650 ugpC glycerol-3-phosp 99.9 3.4E-27 7.3E-32 243.1 14.1 188 40-235 6-222 (356)
28 COG0411 LivG ABC-type branched 99.9 6.3E-28 1.4E-32 231.9 7.6 189 40-236 7-238 (250)
29 COG0410 LivF ABC-type branched 99.9 1.2E-26 2.5E-31 221.6 15.5 189 40-236 6-225 (237)
30 PRK10851 sulfate/thiosulfate t 99.9 8.7E-27 1.9E-31 239.8 14.6 189 40-236 5-225 (353)
31 cd03261 ABC_Org_Solvent_Resist 99.9 1.2E-26 2.7E-31 224.8 14.9 188 40-235 3-224 (235)
32 PRK09452 potA putrescine/sperm 99.9 9.2E-27 2E-31 241.3 14.6 188 40-235 17-232 (375)
33 TIGR03258 PhnT 2-aminoethylpho 99.9 1.1E-26 2.5E-31 239.6 14.8 189 40-236 8-227 (362)
34 COG0444 DppD ABC-type dipeptid 99.9 1.2E-26 2.6E-31 231.3 13.6 180 48-235 16-241 (316)
35 COG1123 ATPase components of v 99.9 1.2E-26 2.6E-31 246.1 14.0 205 21-235 277-517 (539)
36 TIGR01288 nodI ATP-binding ABC 99.9 2.9E-26 6.3E-31 231.1 15.5 188 40-235 7-222 (303)
37 cd03219 ABC_Mj1267_LivG_branch 99.9 2.3E-26 5E-31 222.7 14.1 188 40-235 3-230 (236)
38 PRK11607 potG putrescine trans 99.9 2.7E-26 5.9E-31 238.0 15.0 188 40-235 22-237 (377)
39 cd03265 ABC_DrrA DrrA is the A 99.9 6.6E-26 1.4E-30 217.6 16.2 187 40-234 3-218 (220)
40 COG1137 YhbG ABC-type (unclass 99.9 2.6E-27 5.7E-32 221.3 5.9 190 39-236 6-227 (243)
41 cd03259 ABC_Carb_Solutes_like 99.9 4.4E-26 9.6E-31 217.6 14.5 183 40-230 3-213 (213)
42 TIGR01188 drrA daunorubicin re 99.9 3.5E-26 7.5E-31 230.4 14.5 182 46-235 2-211 (302)
43 PRK09536 btuD corrinoid ABC tr 99.9 3.7E-26 8.1E-31 238.5 15.2 189 40-236 6-227 (402)
44 cd03224 ABC_TM1139_LivF_branch 99.9 3.6E-26 7.9E-31 219.2 13.9 188 40-235 3-219 (222)
45 PRK11000 maltose/maltodextrin 99.9 3.5E-26 7.6E-31 236.7 14.8 188 40-235 6-221 (369)
46 PRK15079 oligopeptide ABC tran 99.9 3.4E-26 7.3E-31 233.6 14.5 205 23-236 7-250 (331)
47 cd03296 ABC_CysA_sulfate_impor 99.9 6.1E-26 1.3E-30 220.7 15.5 188 40-235 5-224 (239)
48 COG4152 ABC-type uncharacteriz 99.9 7.9E-27 1.7E-31 223.8 8.8 189 40-236 5-218 (300)
49 cd03256 ABC_PhnC_transporter A 99.9 5.4E-26 1.2E-30 220.6 13.9 188 40-235 3-232 (241)
50 TIGR03522 GldA_ABC_ATP gliding 99.9 8.2E-26 1.8E-30 227.7 15.5 187 40-236 5-220 (301)
51 cd03218 ABC_YhbG The ABC trans 99.9 6E-26 1.3E-30 219.2 13.6 188 40-235 3-220 (232)
52 cd03293 ABC_NrtD_SsuB_transpor 99.9 8.9E-26 1.9E-30 216.7 14.5 184 40-231 3-217 (220)
53 COG0572 Udk Uridine kinase [Nu 99.9 2.5E-26 5.3E-31 219.3 10.5 175 64-239 6-189 (218)
54 cd03269 ABC_putative_ATPase Th 99.9 1E-25 2.2E-30 214.6 14.7 182 40-229 3-209 (210)
55 TIGR00960 3a0501s02 Type II (G 99.9 6.4E-26 1.4E-30 217.0 13.2 179 40-226 4-216 (216)
56 TIGR03410 urea_trans_UrtE urea 99.9 9.7E-26 2.1E-30 217.7 14.6 188 40-235 3-219 (230)
57 cd03268 ABC_BcrA_bacitracin_re 99.9 1.4E-25 3.1E-30 213.4 15.3 182 40-230 3-208 (208)
58 PRK11264 putative amino-acid A 99.9 1.1E-25 2.4E-30 219.9 14.9 188 40-235 6-231 (250)
59 cd03258 ABC_MetN_methionine_tr 99.9 6.7E-26 1.4E-30 219.2 12.9 188 40-235 4-228 (233)
60 cd03294 ABC_Pro_Gly_Bertaine T 99.9 4.4E-26 9.4E-31 226.1 11.7 189 39-235 26-248 (269)
61 TIGR01186 proV glycine betaine 99.9 8.3E-26 1.8E-30 233.1 14.1 183 46-236 2-218 (363)
62 cd03263 ABC_subfamily_A The AB 99.9 1.1E-25 2.4E-30 215.7 14.0 186 40-234 3-218 (220)
63 TIGR02315 ABC_phnC phosphonate 99.9 7.1E-26 1.5E-30 220.2 12.8 188 40-235 4-233 (243)
64 cd03226 ABC_cobalt_CbiO_domain 99.9 1E-25 2.3E-30 214.0 13.5 178 41-227 3-205 (205)
65 PRK11308 dppF dipeptide transp 99.9 1.3E-25 2.8E-30 229.0 14.8 179 50-236 28-243 (327)
66 cd03301 ABC_MalK_N The N-termi 99.9 2.3E-25 4.9E-30 212.5 15.4 183 40-230 3-213 (213)
67 PRK09493 glnQ glutamine ABC tr 99.9 1.4E-25 3E-30 218.2 14.0 188 40-235 4-223 (240)
68 cd03266 ABC_NatA_sodium_export 99.9 1.4E-25 3.1E-30 214.6 13.8 182 40-229 4-217 (218)
69 PRK11022 dppD dipeptide transp 99.9 1.5E-25 3.3E-30 228.4 14.8 188 41-236 7-242 (326)
70 PRK11831 putative ABC transpor 99.9 1.8E-25 4E-30 221.5 14.7 188 40-235 10-231 (269)
71 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.4E-25 3E-30 214.7 13.2 178 40-226 3-218 (218)
72 PRK09473 oppD oligopeptide tra 99.9 2E-25 4.4E-30 227.8 14.8 180 49-236 28-250 (330)
73 PRK10895 lipopolysaccharide AB 99.9 1.7E-25 3.7E-30 217.6 13.7 188 40-235 6-224 (241)
74 PRK15093 antimicrobial peptide 99.9 2.5E-25 5.4E-30 227.1 15.2 188 41-236 7-247 (330)
75 PRK13647 cbiO cobalt transport 99.9 1.7E-25 3.7E-30 222.4 13.5 187 40-234 7-224 (274)
76 PRK13637 cbiO cobalt transport 99.9 3.1E-25 6.6E-30 222.1 15.2 188 40-235 5-232 (287)
77 TIGR03411 urea_trans_UrtD urea 99.9 2.6E-25 5.7E-30 216.3 14.3 187 40-235 5-229 (242)
78 PRK10619 histidine/lysine/argi 99.9 3E-25 6.4E-30 218.2 14.7 189 39-235 7-239 (257)
79 PRK11614 livF leucine/isoleuci 99.9 1.7E-25 3.7E-30 217.1 12.9 188 40-235 8-224 (237)
80 PRK13634 cbiO cobalt transport 99.9 2.7E-25 5.8E-30 222.9 14.4 188 40-236 5-234 (290)
81 PRK11124 artP arginine transpo 99.9 3.5E-25 7.5E-30 215.6 14.4 188 40-235 5-228 (242)
82 cd03295 ABC_OpuCA_Osmoprotecti 99.9 3.7E-25 8E-30 215.6 13.8 188 40-235 3-223 (242)
83 cd03230 ABC_DR_subfamily_A Thi 99.9 7.1E-25 1.5E-29 203.4 15.0 155 40-226 3-173 (173)
84 cd03260 ABC_PstB_phosphate_tra 99.9 4.9E-25 1.1E-29 212.4 14.4 185 40-234 3-226 (227)
85 cd03262 ABC_HisP_GlnQ_permease 99.9 4.1E-25 8.8E-30 210.6 13.5 179 40-226 3-213 (213)
86 PRK13643 cbiO cobalt transport 99.9 3.4E-25 7.4E-30 221.9 13.5 188 40-236 4-232 (288)
87 TIGR03005 ectoine_ehuA ectoine 99.9 4.7E-25 1E-29 216.1 14.2 188 40-235 3-234 (252)
88 TIGR02673 FtsE cell division A 99.9 3.7E-25 7.9E-30 211.3 13.0 178 40-225 4-214 (214)
89 PRK11300 livG leucine/isoleuci 99.9 5.7E-25 1.2E-29 215.5 14.5 188 40-235 8-241 (255)
90 PRK14250 phosphate ABC transpo 99.9 6.2E-25 1.3E-29 214.1 14.6 186 40-235 6-219 (241)
91 PRK11247 ssuB aliphatic sulfon 99.9 7.1E-25 1.5E-29 216.4 15.1 185 40-232 15-218 (257)
92 PRK13548 hmuV hemin importer A 99.9 6.7E-25 1.5E-29 216.2 14.7 193 40-235 5-228 (258)
93 cd03235 ABC_Metallic_Cations A 99.9 3.9E-25 8.5E-30 211.1 12.7 177 41-225 3-209 (213)
94 TIGR03873 F420-0_ABC_ATP propo 99.9 5.9E-25 1.3E-29 216.0 14.0 188 40-235 4-224 (256)
95 PRK10070 glycine betaine trans 99.9 3.2E-25 6.9E-30 231.4 12.7 204 24-235 4-252 (400)
96 cd03257 ABC_NikE_OppD_transpor 99.9 9.9E-25 2.1E-29 209.8 15.0 183 40-230 4-228 (228)
97 PRK13651 cobalt transporter AT 99.9 5E-25 1.1E-29 222.6 13.5 189 40-236 5-253 (305)
98 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 9.2E-25 2E-29 212.0 14.8 187 40-235 4-219 (236)
99 PRK10575 iron-hydroxamate tran 99.9 7.5E-25 1.6E-29 216.5 14.4 189 39-235 13-235 (265)
100 PRK10908 cell division protein 99.9 1.1E-24 2.4E-29 209.4 15.2 181 40-228 4-217 (222)
101 PRK10253 iron-enterobactin tra 99.9 8E-25 1.7E-29 216.4 14.6 188 40-235 10-231 (265)
102 PRK13646 cbiO cobalt transport 99.9 4.1E-25 8.9E-30 221.0 12.6 188 40-236 5-234 (286)
103 TIGR00972 3a0107s01c2 phosphat 99.9 8.6E-25 1.9E-29 213.6 14.5 186 40-235 4-230 (247)
104 TIGR03740 galliderm_ABC gallid 99.9 1.6E-24 3.4E-29 208.5 16.1 184 40-232 3-208 (223)
105 cd03292 ABC_FtsE_transporter F 99.9 6.7E-25 1.5E-29 209.2 13.3 179 40-226 3-214 (214)
106 COG1123 ATPase components of v 99.9 4.6E-25 9.9E-30 234.0 13.3 186 50-244 22-250 (539)
107 PRK11231 fecE iron-dicitrate t 99.9 8.4E-25 1.8E-29 214.8 14.0 188 40-235 5-225 (255)
108 PRK13650 cbiO cobalt transport 99.9 5.6E-25 1.2E-29 219.3 12.7 188 40-236 7-228 (279)
109 cd03298 ABC_ThiQ_thiamine_tran 99.9 1E-24 2.2E-29 207.9 14.0 180 40-229 3-210 (211)
110 PRK13641 cbiO cobalt transport 99.9 6.9E-25 1.5E-29 219.5 13.2 188 40-235 5-232 (287)
111 cd03225 ABC_cobalt_CbiO_domain 99.9 7.5E-25 1.6E-29 208.7 12.7 178 40-225 2-211 (211)
112 PRK14268 phosphate ABC transpo 99.9 1.7E-24 3.6E-29 213.2 15.4 186 40-235 15-240 (258)
113 COG4608 AppF ABC-type oligopep 99.9 1.2E-24 2.5E-29 213.0 14.0 191 23-244 3-205 (268)
114 cd03229 ABC_Class3 This class 99.9 1.5E-24 3.3E-29 202.0 14.3 156 40-225 3-178 (178)
115 COG4161 ArtP ABC-type arginine 99.9 5.4E-25 1.2E-29 199.8 10.8 187 40-234 5-227 (242)
116 PRK13652 cbiO cobalt transport 99.9 1.7E-24 3.8E-29 215.5 15.4 189 40-236 6-226 (277)
117 PRK11629 lolD lipoprotein tran 99.9 2E-24 4.3E-29 209.3 15.4 183 40-231 8-228 (233)
118 PRK13636 cbiO cobalt transport 99.9 1.6E-24 3.4E-29 216.5 15.1 189 40-236 8-230 (283)
119 TIGR02142 modC_ABC molybdenum 99.9 1.6E-24 3.4E-29 223.2 15.2 186 41-236 3-220 (354)
120 PRK11144 modC molybdate transp 99.9 1.2E-24 2.7E-29 223.8 14.4 182 42-236 5-217 (352)
121 PRK11248 tauB taurine transpor 99.9 2.8E-24 6.1E-29 211.6 16.2 185 40-232 4-215 (255)
122 PRK09984 phosphonate/organopho 99.9 1.4E-24 3.1E-29 214.0 14.1 188 40-235 7-240 (262)
123 TIGR01978 sufC FeS assembly AT 99.9 2.2E-24 4.7E-29 209.6 15.2 188 40-235 3-232 (243)
124 PRK13638 cbiO cobalt transport 99.9 1E-24 2.2E-29 216.3 13.1 189 40-236 4-224 (271)
125 PRK14247 phosphate ABC transpo 99.9 2.3E-24 5E-29 210.8 15.3 187 40-235 6-232 (250)
126 PRK15439 autoinducer 2 ABC tra 99.9 1.6E-24 3.5E-29 233.0 15.3 187 40-235 14-227 (510)
127 PRK13631 cbiO cobalt transport 99.9 1.5E-24 3.3E-29 220.5 14.1 189 39-236 23-264 (320)
128 PRK14267 phosphate ABC transpo 99.9 1.8E-24 3.8E-29 212.0 14.1 187 40-235 7-235 (253)
129 cd03264 ABC_drug_resistance_li 99.9 2.1E-24 4.6E-29 205.7 13.9 181 40-230 3-211 (211)
130 TIGR02211 LolD_lipo_ex lipopro 99.9 2.2E-24 4.7E-29 206.9 14.0 179 40-227 4-220 (221)
131 PRK10762 D-ribose transporter 99.9 1.7E-24 3.6E-29 232.3 14.6 188 40-235 7-228 (501)
132 cd03233 ABC_PDR_domain1 The pl 99.9 4.3E-24 9.2E-29 203.2 15.8 171 40-229 6-201 (202)
133 PRK14273 phosphate ABC transpo 99.9 2E-24 4.3E-29 211.9 13.8 186 40-235 10-236 (254)
134 TIGR02769 nickel_nikE nickel i 99.9 2.3E-24 4.9E-29 213.2 14.2 189 40-236 5-239 (265)
135 TIGR03415 ABC_choXWV_ATP choli 99.9 1.1E-24 2.3E-29 226.1 12.4 187 42-236 29-253 (382)
136 cd03232 ABC_PDR_domain2 The pl 99.9 4.5E-24 9.7E-29 201.3 15.5 166 40-230 6-192 (192)
137 PRK13639 cbiO cobalt transport 99.9 1.9E-24 4.2E-29 215.0 13.6 189 40-236 4-225 (275)
138 cd03297 ABC_ModC_molybdenum_tr 99.9 2.6E-24 5.7E-29 205.7 13.9 178 42-230 5-214 (214)
139 cd03246 ABCC_Protease_Secretio 99.9 2.4E-24 5.2E-29 199.8 13.2 152 40-226 3-173 (173)
140 PRK14269 phosphate ABC transpo 99.9 2.6E-24 5.6E-29 210.3 13.9 187 40-235 5-228 (246)
141 PRK10584 putative ABC transpor 99.9 3.9E-24 8.5E-29 206.2 14.7 180 40-228 9-226 (228)
142 PRK14242 phosphate transporter 99.9 4.3E-24 9.3E-29 209.3 15.2 186 40-235 9-235 (253)
143 PRK13635 cbiO cobalt transport 99.9 2.1E-24 4.6E-29 215.2 13.1 188 40-236 8-228 (279)
144 cd03300 ABC_PotA_N PotA is an 99.9 4.3E-24 9.3E-29 206.9 14.8 188 40-235 3-218 (232)
145 PRK09700 D-allose transporter 99.9 2.5E-24 5.5E-29 231.3 14.5 188 40-235 8-232 (510)
146 PRK13649 cbiO cobalt transport 99.9 3.3E-24 7.1E-29 213.5 14.2 187 40-235 5-232 (280)
147 PRK13644 cbiO cobalt transport 99.9 2E-24 4.4E-29 214.8 12.6 188 40-236 4-223 (274)
148 COG2274 SunT ABC-type bacterio 99.9 9.1E-25 2E-29 241.3 11.1 191 37-236 471-695 (709)
149 TIGR00968 3a0106s01 sulfate AB 99.9 3.7E-24 8.1E-29 208.1 14.1 188 40-235 3-218 (237)
150 PRK14235 phosphate transporter 99.9 7E-24 1.5E-28 210.0 16.3 187 39-235 21-249 (267)
151 TIGR01277 thiQ thiamine ABC tr 99.9 4.1E-24 8.8E-29 204.4 14.1 182 40-231 3-212 (213)
152 cd03213 ABCG_EPDR ABCG transpo 99.9 6.6E-24 1.4E-28 200.6 15.4 165 40-229 6-193 (194)
153 PRK11701 phnK phosphonate C-P 99.9 6.3E-24 1.4E-28 209.0 15.6 188 40-235 9-239 (258)
154 PRK14256 phosphate ABC transpo 99.9 5.9E-24 1.3E-28 208.3 15.1 188 39-235 6-234 (252)
155 PRK10982 galactose/methyl gala 99.9 3.2E-24 7E-29 229.5 14.3 187 41-235 2-221 (491)
156 PRK10261 glutathione transport 99.9 3.9E-24 8.4E-29 235.2 15.2 189 40-236 316-552 (623)
157 PRK13549 xylose transporter AT 99.9 4.1E-24 8.8E-29 229.6 15.1 188 40-235 8-230 (506)
158 COG4175 ProV ABC-type proline/ 99.9 1.7E-24 3.8E-29 214.2 11.1 182 47-236 38-253 (386)
159 cd03247 ABCC_cytochrome_bd The 99.9 5.7E-24 1.2E-28 198.0 13.9 158 40-229 3-177 (178)
160 PRK10744 pstB phosphate transp 99.9 5.2E-24 1.1E-28 209.9 14.4 186 40-235 16-242 (260)
161 PRK14239 phosphate transporter 99.9 7.8E-24 1.7E-28 207.1 15.2 186 40-235 8-234 (252)
162 COG1129 MglA ABC-type sugar tr 99.9 2.7E-24 5.8E-29 226.8 12.7 183 40-231 11-228 (500)
163 PRK14251 phosphate ABC transpo 99.9 9.1E-24 2E-28 206.7 15.7 187 40-235 7-233 (251)
164 COG4559 ABC-type hemin transpo 99.9 4.3E-24 9.4E-29 201.4 12.6 193 41-236 5-229 (259)
165 PRK14270 phosphate ABC transpo 99.9 7.9E-24 1.7E-28 207.3 15.1 186 40-235 7-233 (251)
166 COG3845 ABC-type uncharacteriz 99.9 7E-24 1.5E-28 220.3 15.3 182 39-230 6-222 (501)
167 cd03215 ABC_Carb_Monos_II This 99.9 7.1E-24 1.5E-28 198.2 13.9 154 41-226 8-182 (182)
168 PRK10771 thiQ thiamine transpo 99.9 5.3E-24 1.1E-28 206.2 13.4 186 40-235 4-217 (232)
169 PRK14272 phosphate ABC transpo 99.9 7.9E-24 1.7E-28 207.1 14.7 187 40-235 7-234 (252)
170 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.1E-23 2.5E-28 199.8 15.3 164 40-230 3-187 (200)
171 PRK14241 phosphate transporter 99.9 8.9E-24 1.9E-28 207.9 14.8 187 40-235 7-240 (258)
172 PRK14262 phosphate ABC transpo 99.9 8E-24 1.7E-28 207.0 14.2 186 40-235 6-232 (250)
173 PRK14237 phosphate transporter 99.9 1.1E-23 2.4E-28 208.6 15.2 187 39-235 22-249 (267)
174 PRK14240 phosphate transporter 99.9 9.7E-24 2.1E-28 206.4 14.5 186 40-235 6-232 (250)
175 PRK13640 cbiO cobalt transport 99.9 5.1E-24 1.1E-28 212.7 12.7 188 40-236 8-231 (282)
176 PRK13547 hmuV hemin importer A 99.9 9.5E-24 2.1E-28 210.0 14.5 193 40-235 4-242 (272)
177 PRK14259 phosphate ABC transpo 99.9 1.2E-23 2.7E-28 208.5 15.3 186 40-235 16-251 (269)
178 PRK14275 phosphate ABC transpo 99.9 1.8E-23 4E-28 209.2 16.4 187 40-235 42-268 (286)
179 cd03251 ABCC_MsbA MsbA is an e 99.9 7.7E-24 1.7E-28 204.8 13.1 186 40-235 3-223 (234)
180 PRK14257 phosphate ABC transpo 99.9 1.3E-23 2.8E-28 214.4 15.5 188 39-236 82-312 (329)
181 PRK15112 antimicrobial peptide 99.9 6.6E-24 1.4E-28 210.2 12.8 188 40-235 7-237 (267)
182 cd03299 ABC_ModC_like Archeal 99.9 1.1E-23 2.5E-28 204.5 14.1 187 40-235 3-217 (235)
183 PRK14274 phosphate ABC transpo 99.9 1.6E-23 3.6E-28 206.1 15.4 186 40-235 15-241 (259)
184 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 4.3E-24 9.4E-29 237.1 12.6 189 38-236 452-672 (686)
185 PRK14249 phosphate ABC transpo 99.9 1.4E-23 3E-28 205.5 14.5 186 40-235 7-233 (251)
186 PRK14253 phosphate ABC transpo 99.9 1.4E-23 3E-28 205.2 14.4 186 40-235 6-231 (249)
187 PRK14238 phosphate transporter 99.9 1.7E-23 3.6E-28 207.8 15.2 187 39-235 26-253 (271)
188 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 4.8E-24 1E-28 237.6 12.6 189 38-236 478-699 (710)
189 PRK13645 cbiO cobalt transport 99.9 7.1E-24 1.5E-28 212.2 12.5 188 40-235 9-238 (289)
190 COG1132 MdlB ABC-type multidru 99.9 4.2E-24 9.2E-29 232.3 11.8 217 10-236 300-551 (567)
191 PRK14248 phosphate ABC transpo 99.9 1.5E-23 3.3E-28 207.5 14.6 187 39-235 23-250 (268)
192 TIGR02633 xylG D-xylose ABC tr 99.9 1.4E-23 3E-28 225.0 15.5 187 40-234 4-227 (500)
193 TIGR03608 L_ocin_972_ABC putat 99.9 8.8E-24 1.9E-28 200.4 12.4 172 41-221 2-206 (206)
194 PRK13632 cbiO cobalt transport 99.9 1E-23 2.2E-28 209.2 13.4 187 40-235 10-229 (271)
195 PRK14261 phosphate ABC transpo 99.9 1.8E-23 3.9E-28 205.0 15.0 186 40-235 9-235 (253)
196 PRK13648 cbiO cobalt transport 99.9 7.1E-24 1.5E-28 210.0 12.2 187 40-235 10-229 (269)
197 PRK14265 phosphate ABC transpo 99.9 2E-23 4.3E-28 207.7 15.4 186 40-235 23-256 (274)
198 PRK10261 glutathione transport 99.9 9E-24 2E-28 232.3 14.1 189 40-236 15-257 (623)
199 PRK14244 phosphate ABC transpo 99.9 1.7E-23 3.6E-28 205.0 14.4 189 37-235 5-235 (251)
200 PRK14271 phosphate ABC transpo 99.9 2.5E-23 5.4E-28 207.3 15.9 187 39-235 23-249 (276)
201 COG4181 Predicted ABC-type tra 99.9 4.7E-24 1E-28 195.3 9.8 184 38-229 11-227 (228)
202 COG3840 ThiQ ABC-type thiamine 99.9 6.4E-24 1.4E-28 196.1 10.6 187 40-236 4-218 (231)
203 PRK14245 phosphate ABC transpo 99.9 3.3E-23 7.2E-28 202.8 16.1 187 40-236 6-233 (250)
204 cd03267 ABC_NatA_like Similar 99.9 1.8E-23 3.8E-28 203.4 14.0 179 44-230 28-236 (236)
205 PRK14243 phosphate transporter 99.9 2.2E-23 4.8E-28 206.1 14.7 186 40-235 13-246 (264)
206 PRK13642 cbiO cobalt transport 99.9 1.7E-23 3.6E-28 208.4 13.9 188 40-236 7-228 (277)
207 cd03234 ABCG_White The White s 99.9 2.8E-23 6.2E-28 200.3 14.8 183 40-230 6-226 (226)
208 PRK14236 phosphate transporter 99.9 3.6E-23 7.7E-28 205.5 15.8 186 40-235 28-254 (272)
209 PRK14258 phosphate ABC transpo 99.9 3.4E-23 7.3E-28 204.3 15.5 187 40-235 10-243 (261)
210 PRK11288 araG L-arabinose tran 99.9 2E-23 4.4E-28 223.9 15.1 183 40-230 7-222 (501)
211 TIGR02323 CP_lyasePhnK phospho 99.9 2.3E-23 5.1E-28 204.0 14.2 188 40-235 6-236 (253)
212 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.3E-23 2.8E-28 204.0 12.1 185 40-235 3-224 (238)
213 PRK14255 phosphate ABC transpo 99.9 3.6E-23 7.7E-28 202.6 15.4 186 40-235 8-234 (252)
214 PRK13633 cobalt transporter AT 99.9 1.2E-23 2.5E-28 209.9 12.1 188 40-236 7-232 (280)
215 cd03252 ABCC_Hemolysin The ABC 99.9 1.2E-23 2.7E-28 203.9 11.7 187 40-236 3-224 (237)
216 PRK11174 cysteine/glutathione 99.9 1.8E-23 3.9E-28 228.1 14.1 188 39-236 351-571 (588)
217 PRK10247 putative ABC transpor 99.9 2.1E-23 4.6E-28 201.3 12.9 181 40-231 10-221 (225)
218 PRK10419 nikE nickel transport 99.9 3.3E-23 7.2E-28 205.3 14.5 189 40-236 6-240 (268)
219 COG4172 ABC-type uncharacteriz 99.9 3.2E-23 6.9E-28 210.6 14.4 197 48-269 298-531 (534)
220 PRK13543 cytochrome c biogenes 99.9 3.7E-23 8E-28 198.2 14.1 175 40-222 14-211 (214)
221 cd03216 ABC_Carb_Monos_I This 99.9 6E-23 1.3E-27 189.0 15.0 142 40-228 3-162 (163)
222 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.8E-23 6E-28 197.7 13.0 177 40-231 9-206 (207)
223 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.5E-23 3.2E-28 209.1 11.4 187 40-236 5-224 (275)
224 PRK14263 phosphate ABC transpo 99.9 5.1E-23 1.1E-27 203.3 15.1 188 39-235 10-243 (261)
225 cd03245 ABCC_bacteriocin_expor 99.9 2.5E-23 5.5E-28 199.4 12.5 180 40-229 5-219 (220)
226 PRK10418 nikD nickel transport 99.9 3.9E-23 8.5E-28 203.0 14.0 186 40-235 7-228 (254)
227 TIGR02982 heterocyst_DevA ABC 99.9 4.7E-23 1E-27 198.0 14.3 178 40-226 4-219 (220)
228 cd03253 ABCC_ATM1_transporter 99.9 2.9E-23 6.3E-28 201.0 12.9 185 40-235 3-222 (236)
229 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 6.3E-23 1.4E-27 198.2 15.0 179 39-230 24-224 (224)
230 TIGR01184 ntrCD nitrate transp 99.9 2.7E-23 5.8E-28 201.4 12.2 175 53-235 1-202 (230)
231 cd03228 ABCC_MRP_Like The MRP 99.9 3.9E-23 8.4E-28 191.4 12.7 151 40-225 3-171 (171)
232 cd03254 ABCC_Glucan_exporter_l 99.9 3.3E-23 7.2E-28 199.7 12.7 185 40-235 5-224 (229)
233 KOG0058 Peptide exporter, ABC 99.9 1.6E-23 3.6E-28 225.8 11.4 219 8-236 434-690 (716)
234 COG4167 SapF ABC-type antimicr 99.9 2.3E-23 4.9E-28 192.7 10.6 199 48-271 24-256 (267)
235 TIGR01193 bacteriocin_ABC ABC- 99.9 1.4E-23 3E-28 233.9 10.5 188 39-236 475-696 (708)
236 PRK09544 znuC high-affinity zi 99.9 4.9E-23 1.1E-27 202.5 13.3 183 40-235 7-207 (251)
237 PRK10790 putative multidrug tr 99.9 2.6E-23 5.6E-28 227.2 12.4 188 39-236 342-562 (592)
238 cd03223 ABCD_peroxisomal_ALDP 99.9 8E-23 1.7E-27 188.8 13.7 153 40-224 3-163 (166)
239 PRK14260 phosphate ABC transpo 99.9 5.9E-23 1.3E-27 202.3 13.7 186 40-235 10-241 (259)
240 PRK11176 lipid transporter ATP 99.9 3.3E-23 7.2E-28 225.7 12.9 188 39-236 343-566 (582)
241 PRK03695 vitamin B12-transport 99.9 4.7E-23 1E-27 201.9 12.6 176 52-235 11-220 (248)
242 PRK15134 microcin C ABC transp 99.9 3.6E-23 7.7E-28 223.4 12.5 188 40-235 278-513 (529)
243 PRK14246 phosphate ABC transpo 99.9 1.1E-22 2.5E-27 200.4 15.0 188 39-235 12-239 (257)
244 COG4148 ModC ABC-type molybdat 99.9 2.4E-23 5.2E-28 203.2 9.8 191 55-255 16-236 (352)
245 PRK15056 manganese/iron transp 99.9 7.3E-23 1.6E-27 203.2 13.6 187 40-235 9-228 (272)
246 TIGR00958 3a01208 Conjugate Tr 99.9 3.7E-23 8E-28 230.7 12.7 189 38-236 479-701 (711)
247 PRK14252 phosphate ABC transpo 99.9 8.7E-23 1.9E-27 201.7 13.8 187 39-235 18-247 (265)
248 PRK14254 phosphate ABC transpo 99.9 1.5E-22 3.2E-27 202.6 15.6 186 40-235 42-267 (285)
249 CHL00131 ycf16 sulfate ABC tra 99.9 1.8E-22 4E-27 197.4 15.8 186 40-233 10-237 (252)
250 PRK14266 phosphate ABC transpo 99.9 1.3E-22 2.9E-27 198.4 14.8 186 40-235 6-232 (250)
251 cd03214 ABC_Iron-Siderophores_ 99.9 1.5E-22 3.2E-27 189.0 14.4 159 41-229 3-179 (180)
252 TIGR03375 type_I_sec_LssB type 99.9 5.7E-23 1.2E-27 228.5 13.7 189 38-236 464-687 (694)
253 PRK11160 cysteine/glutathione 99.9 5.6E-23 1.2E-27 224.1 13.2 189 38-236 339-561 (574)
254 PRK15064 ABC transporter ATP-b 99.9 1.1E-22 2.5E-27 219.6 15.3 184 40-235 4-240 (530)
255 PRK13549 xylose transporter AT 99.9 4.9E-23 1.1E-27 221.2 12.2 187 40-234 262-491 (506)
256 TIGR03269 met_CoM_red_A2 methy 99.9 7E-23 1.5E-27 220.7 13.4 188 40-235 3-256 (520)
257 PRK15134 microcin C ABC transp 99.9 1.1E-22 2.4E-27 219.6 14.5 188 40-235 8-244 (529)
258 PRK13538 cytochrome c biogenes 99.9 1.5E-22 3.2E-27 192.5 13.5 160 40-207 4-182 (204)
259 cd03244 ABCC_MRP_domain2 Domai 99.9 1.2E-22 2.6E-27 194.8 12.8 182 40-231 5-220 (221)
260 PRK10938 putative molybdenum t 99.9 6.9E-23 1.5E-27 219.1 12.1 188 40-235 6-222 (490)
261 TIGR02770 nickel_nikD nickel i 99.9 8.4E-23 1.8E-27 197.7 11.5 176 52-235 1-213 (230)
262 PRK09580 sufC cysteine desulfu 99.9 1.5E-22 3.2E-27 197.5 13.2 186 40-233 4-231 (248)
263 TIGR03269 met_CoM_red_A2 methy 99.9 1.1E-22 2.4E-27 219.1 12.9 188 40-235 282-515 (520)
264 cd03288 ABCC_SUR2 The SUR doma 99.9 1.8E-22 3.8E-27 198.8 13.1 186 40-235 22-241 (257)
265 TIGR01257 rim_protein retinal- 99.9 1.7E-22 3.7E-27 241.6 15.4 189 39-235 1939-2157(2272)
266 KOG0057 Mitochondrial Fe/S clu 99.9 9E-23 1.9E-27 213.9 11.3 190 38-236 352-573 (591)
267 KOG0055 Multidrug/pheromone ex 99.9 5.4E-23 1.2E-27 232.5 10.3 218 9-236 318-575 (1228)
268 cd03231 ABC_CcmA_heme_exporter 99.9 2.1E-22 4.6E-27 191.1 12.8 171 40-221 3-198 (201)
269 PRK11819 putative ABC transpor 99.9 2.4E-22 5.1E-27 218.4 15.0 183 40-234 9-247 (556)
270 PRK13657 cyclic beta-1,2-gluca 99.9 1.6E-22 3.4E-27 221.0 13.5 188 39-236 336-557 (588)
271 TIGR01189 ccmA heme ABC export 99.9 2.5E-22 5.4E-27 190.0 12.7 159 40-207 3-180 (198)
272 COG4172 ABC-type uncharacteriz 99.9 2.6E-22 5.7E-27 203.9 13.6 175 48-235 21-245 (534)
273 TIGR01842 type_I_sec_PrtD type 99.9 1.7E-22 3.6E-27 218.8 12.8 188 38-235 317-540 (544)
274 cd03250 ABCC_MRP_domain1 Domai 99.9 1.5E-22 3.2E-27 192.2 10.8 170 40-225 3-204 (204)
275 TIGR02324 CP_lyasePhnL phospho 99.9 3.2E-22 7E-27 192.4 12.7 173 41-221 5-222 (224)
276 PRK09700 D-allose transporter 99.9 2.4E-22 5.2E-27 216.1 13.0 183 40-232 268-493 (510)
277 TIGR02633 xylG D-xylose ABC tr 99.9 2.7E-22 5.8E-27 215.1 13.1 184 40-231 260-486 (500)
278 PRK13546 teichoic acids export 99.9 4.1E-22 9E-27 197.5 13.5 199 23-235 3-230 (264)
279 PRK14264 phosphate ABC transpo 99.9 7.7E-22 1.7E-26 199.3 15.6 187 39-235 47-287 (305)
280 COG4525 TauB ABC-type taurine 99.9 3.6E-22 7.9E-27 186.4 12.0 183 39-229 5-216 (259)
281 cd03248 ABCC_TAP TAP, the Tran 99.9 3.4E-22 7.3E-27 192.5 12.2 178 39-226 13-226 (226)
282 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 4.5E-22 9.7E-27 216.0 14.6 183 40-234 7-245 (552)
283 PRK10789 putative multidrug tr 99.9 2.7E-22 6E-27 218.4 12.9 188 39-236 315-537 (569)
284 TIGR02203 MsbA_lipidA lipid A 99.9 2.6E-22 5.7E-27 217.9 12.5 190 38-236 331-555 (571)
285 PTZ00301 uridine kinase; Provi 99.9 2.2E-22 4.7E-27 193.2 9.8 175 66-241 3-190 (210)
286 TIGR01192 chvA glucan exporter 99.9 4E-22 8.6E-27 217.9 13.1 188 39-236 336-557 (585)
287 PRK13540 cytochrome c biogenes 99.9 5.7E-22 1.2E-26 187.9 12.3 160 40-207 4-180 (200)
288 TIGR01846 type_I_sec_HlyB type 99.9 4.2E-22 9E-27 221.7 13.1 189 38-236 456-679 (694)
289 cd03290 ABCC_SUR1_N The SUR do 99.9 5.1E-22 1.1E-26 190.4 11.9 175 40-224 3-217 (218)
290 PRK15064 ABC transporter ATP-b 99.9 6.9E-22 1.5E-26 213.5 13.8 183 39-235 321-523 (530)
291 PRK13539 cytochrome c biogenes 99.9 8.5E-22 1.8E-26 187.8 12.7 159 40-207 5-180 (207)
292 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.3E-21 2.9E-26 176.7 13.2 135 40-225 3-144 (144)
293 PRK13545 tagH teichoic acids e 99.9 1.8E-21 3.8E-26 207.5 15.9 199 24-236 4-231 (549)
294 PLN03130 ABC transporter C fam 99.9 5.8E-22 1.3E-26 236.7 13.2 189 38-236 1238-1460(1622)
295 PLN03211 ABC transporter G-25; 99.9 6E-22 1.3E-26 218.9 12.1 188 41-236 72-295 (659)
296 PLN03232 ABC transporter C fam 99.9 5.4E-22 1.2E-26 236.2 12.5 188 39-236 1236-1457(1495)
297 COG4987 CydC ABC-type transpor 99.9 2.5E-22 5.4E-27 210.4 7.8 216 11-237 309-561 (573)
298 TIGR02204 MsbA_rel ABC transpo 99.9 1.1E-21 2.5E-26 213.3 13.3 188 39-236 339-562 (576)
299 TIGR01257 rim_protein retinal- 99.9 2E-21 4.3E-26 232.6 16.0 187 40-235 931-1147(2272)
300 COG4604 CeuD ABC-type enteroch 99.9 4.9E-22 1.1E-26 185.7 7.7 189 40-236 4-224 (252)
301 KOG0056 Heavy metal exporter H 99.9 1.8E-22 3.9E-27 208.4 5.1 215 13-236 510-760 (790)
302 PRK10762 D-ribose transporter 99.9 1.7E-21 3.8E-26 209.0 12.8 177 51-235 266-482 (501)
303 PRK11288 araG L-arabinose tran 99.9 1.6E-21 3.5E-26 209.3 11.9 176 51-234 267-482 (501)
304 COG4988 CydD ABC-type transpor 99.9 1.6E-21 3.5E-26 206.7 11.6 187 40-236 323-542 (559)
305 PTZ00265 multidrug resistance 99.9 1.5E-21 3.3E-26 231.3 12.6 189 38-236 1166-1451(1466)
306 PTZ00243 ABC transporter; Prov 99.9 2.3E-21 5E-26 231.1 14.0 189 38-236 1309-1532(1560)
307 PRK10535 macrolide transporter 99.9 9.3E-21 2E-25 209.4 17.5 188 40-236 7-231 (648)
308 PRK15439 autoinducer 2 ABC tra 99.9 3.6E-21 7.9E-26 207.1 13.7 176 52-235 278-490 (510)
309 TIGR00957 MRP_assoc_pro multi 99.9 2.5E-21 5.3E-26 230.9 13.1 189 38-236 1285-1507(1522)
310 TIGR01166 cbiO cobalt transpor 99.8 1.9E-21 4.2E-26 182.6 9.6 152 48-207 3-180 (190)
311 KOG0055 Multidrug/pheromone ex 99.8 9.8E-22 2.1E-26 222.4 8.8 217 10-236 956-1212(1228)
312 PRK15177 Vi polysaccharide exp 99.8 4.7E-21 1E-25 183.9 11.9 170 51-234 1-189 (213)
313 TIGR02857 CydD thiol reductant 99.8 5.1E-21 1.1E-25 206.4 13.5 173 39-221 322-529 (529)
314 PRK10982 galactose/methyl gala 99.8 6.5E-21 1.4E-25 204.0 13.9 178 41-228 254-471 (491)
315 cd03291 ABCC_CFTR1 The CFTR su 99.8 8.1E-21 1.8E-25 190.0 13.5 178 40-235 42-245 (282)
316 TIGR02868 CydC thiol reductant 99.8 3.9E-21 8.5E-26 207.3 12.0 161 38-207 335-522 (529)
317 COG4586 ABC-type uncharacteriz 99.8 7E-22 1.5E-26 192.5 5.4 204 24-235 3-244 (325)
318 cd03222 ABC_RNaseL_inhibitor T 99.8 1E-20 2.3E-25 177.0 13.0 135 41-225 4-149 (177)
319 TIGR03771 anch_rpt_ABC anchore 99.8 5E-21 1.1E-25 184.7 11.0 169 58-235 1-199 (223)
320 PRK11819 putative ABC transpor 99.8 1.4E-20 3E-25 204.6 15.1 176 40-227 327-522 (556)
321 PRK10522 multidrug transporter 99.8 1.3E-20 2.9E-25 204.2 14.8 178 39-229 324-530 (547)
322 PTZ00265 multidrug resistance 99.8 6.7E-21 1.5E-25 225.8 13.1 177 39-225 384-656 (1466)
323 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.8E-20 3.9E-25 203.5 15.4 176 40-227 325-520 (552)
324 PRK13541 cytochrome c biogenes 99.8 1.5E-20 3.3E-25 177.5 12.9 151 40-199 4-165 (195)
325 PRK11147 ABC transporter ATPas 99.8 2.2E-20 4.7E-25 206.1 15.0 178 39-228 321-518 (635)
326 PRK10636 putative ABC transpor 99.8 2E-20 4.3E-25 206.4 14.6 184 39-235 314-515 (638)
327 TIGR01271 CFTR_protein cystic 99.8 1.4E-20 3E-25 224.1 14.1 189 38-236 1218-1439(1490)
328 COG4618 ArpD ABC-type protease 99.8 6.5E-21 1.4E-25 198.5 9.3 203 10-236 320-559 (580)
329 PRK10938 putative molybdenum t 99.8 1.1E-20 2.3E-25 202.2 11.2 182 40-229 263-484 (490)
330 TIGR01194 cyc_pep_trnsptr cycl 99.8 3.7E-20 8.1E-25 201.2 14.5 181 40-230 340-552 (555)
331 cd03237 ABC_RNaseL_inhibitor_d 99.8 2.7E-20 5.9E-25 182.7 12.1 159 52-224 9-192 (246)
332 TIGR01187 potA spermidine/putr 99.8 1.2E-20 2.5E-25 192.4 9.3 160 71-235 1-188 (325)
333 COG4619 ABC-type uncharacteriz 99.8 8.2E-21 1.8E-25 173.6 7.1 172 46-226 12-212 (223)
334 TIGR00955 3a01204 The Eye Pigm 99.8 5.4E-20 1.2E-24 202.3 14.4 181 48-236 36-255 (617)
335 cd03236 ABC_RNaseL_inhibitor_d 99.8 2E-20 4.3E-25 184.7 9.5 179 39-230 2-220 (255)
336 cd00267 ABC_ATPase ABC (ATP-bi 99.8 1.1E-19 2.4E-24 165.6 13.6 137 41-224 3-156 (157)
337 COG4674 Uncharacterized ABC-ty 99.8 1.9E-20 4E-25 174.9 8.6 187 40-235 8-233 (249)
338 PRK13409 putative ATPase RIL; 99.8 6.8E-20 1.5E-24 200.3 14.3 173 40-230 343-535 (590)
339 PF00485 PRK: Phosphoribulokin 99.8 2.9E-21 6.2E-26 182.5 2.6 170 68-239 1-187 (194)
340 cd02029 PRK_like Phosphoribulo 99.8 3E-20 6.5E-25 182.8 9.8 181 68-250 1-217 (277)
341 PRK10636 putative ABC transpor 99.8 1.7E-19 3.7E-24 199.1 15.6 181 40-233 4-232 (638)
342 COG1134 TagH ABC-type polysacc 99.8 5.4E-20 1.2E-24 177.5 10.1 177 47-236 37-235 (249)
343 COG0396 sufC Cysteine desulfur 99.8 1.5E-19 3.3E-24 172.7 12.1 186 41-235 7-231 (251)
344 PLN03073 ABC transporter F fam 99.8 1.6E-19 3.4E-24 201.2 13.8 177 40-231 511-708 (718)
345 TIGR00956 3a01205 Pleiotropic 99.8 2.5E-19 5.4E-24 212.0 15.9 187 40-234 762-990 (1394)
346 TIGR00954 3a01203 Peroxysomal 99.8 1.8E-19 4E-24 199.4 12.6 169 40-222 454-652 (659)
347 PRK11147 ABC transporter ATPas 99.8 4.8E-19 1E-23 195.4 15.5 183 40-234 6-240 (635)
348 COG5265 ATM1 ABC-type transpor 99.8 6.6E-20 1.4E-24 187.5 6.5 190 37-236 262-485 (497)
349 COG1101 PhnK ABC-type uncharac 99.8 3.4E-19 7.3E-24 168.8 10.6 173 49-229 18-230 (263)
350 COG4107 PhnK ABC-type phosphon 99.8 4.6E-19 1E-23 163.1 10.3 196 41-245 10-248 (258)
351 cd02028 UMPK_like Uridine mono 99.8 3.7E-19 8E-24 166.6 9.2 169 68-238 1-178 (179)
352 TIGR00957 MRP_assoc_pro multi 99.8 5.8E-19 1.2E-23 210.8 13.0 182 39-236 638-849 (1522)
353 PLN03140 ABC transporter G fam 99.8 1.1E-18 2.3E-23 206.7 14.4 178 48-233 891-1106(1470)
354 PLN03140 ABC transporter G fam 99.8 1E-18 2.2E-23 206.9 13.2 180 49-236 177-426 (1470)
355 cd02025 PanK Pantothenate kina 99.8 3.8E-19 8.3E-24 171.9 7.7 172 68-239 1-209 (220)
356 PLN02348 phosphoribulokinase 99.8 1.5E-18 3.4E-23 178.9 11.6 175 61-238 44-242 (395)
357 TIGR00235 udk uridine kinase. 99.8 9E-19 2E-23 167.1 9.2 175 61-239 4-187 (207)
358 PLN03130 ABC transporter C fam 99.8 1.4E-18 3.1E-23 207.9 13.0 182 39-236 616-827 (1622)
359 TIGR00956 3a01205 Pleiotropic 99.8 1E-18 2.3E-23 206.8 11.5 179 49-235 73-298 (1394)
360 PRK13409 putative ATPase RIL; 99.8 8.8E-19 1.9E-23 191.6 9.1 179 35-224 67-287 (590)
361 PLN03232 ABC transporter C fam 99.8 1.8E-18 3.9E-23 206.3 12.2 183 39-236 616-827 (1495)
362 cd03238 ABC_UvrA The excision 99.8 6.6E-18 1.4E-22 158.0 12.8 147 49-226 7-166 (176)
363 COG0488 Uup ATPase components 99.8 7.1E-18 1.5E-22 181.4 14.6 178 39-229 5-231 (530)
364 PRK15453 phosphoribulokinase; 99.8 3E-18 6.4E-23 169.9 10.5 184 66-250 5-223 (290)
365 TIGR01271 CFTR_protein cystic 99.8 3.1E-18 6.7E-23 204.1 12.6 171 50-236 439-635 (1490)
366 PRK05480 uridine/cytidine kina 99.7 3E-18 6.4E-23 163.4 9.7 176 65-241 5-189 (209)
367 COG1119 ModF ABC-type molybden 99.7 1.8E-18 3.8E-23 167.0 7.9 184 39-230 33-255 (257)
368 PLN03073 ABC transporter F fam 99.7 7.2E-18 1.6E-22 187.9 12.1 187 39-233 179-427 (718)
369 KOG0054 Multidrug resistance-a 99.7 2.6E-18 5.7E-23 198.5 8.4 192 36-236 1137-1361(1381)
370 KOG0059 Lipid exporter ABCA1 a 99.7 3.8E-18 8.2E-23 194.4 9.3 194 35-236 562-786 (885)
371 PTZ00243 ABC transporter; Prov 99.7 9.7E-18 2.1E-22 200.3 12.0 176 45-236 668-869 (1560)
372 PF00005 ABC_tran: ABC transpo 99.7 8.2E-18 1.8E-22 148.9 7.1 123 53-186 1-137 (137)
373 KOG0061 Transporter, ABC super 99.7 3.7E-17 7.9E-22 179.5 12.7 180 49-236 42-259 (613)
374 COG4136 ABC-type uncharacteriz 99.7 7.2E-18 1.6E-22 151.9 5.6 145 40-194 5-171 (213)
375 COG4778 PhnL ABC-type phosphon 99.7 6.5E-17 1.4E-21 148.4 10.7 160 50-222 24-226 (235)
376 TIGR00554 panK_bact pantothena 99.7 3.4E-17 7.3E-22 164.2 8.9 179 63-241 59-279 (290)
377 cd02023 UMPK Uridine monophosp 99.7 9E-17 1.9E-21 151.9 10.5 173 68-241 1-182 (198)
378 cd02026 PRK Phosphoribulokinas 99.7 6.3E-17 1.4E-21 161.3 9.4 168 68-238 1-175 (273)
379 PRK07429 phosphoribulokinase; 99.7 2.2E-16 4.7E-21 161.0 10.6 172 64-238 6-184 (327)
380 PRK05439 pantothenate kinase; 99.7 3.6E-16 7.9E-21 158.0 10.5 179 62-240 82-298 (311)
381 COG4133 CcmA ABC-type transpor 99.7 4.6E-16 1E-20 144.9 10.1 150 40-197 5-170 (209)
382 cd03270 ABC_UvrA_I The excisio 99.6 3.8E-16 8.2E-21 151.3 8.0 67 158-230 143-226 (226)
383 COG4170 SapD ABC-type antimicr 99.6 8.8E-16 1.9E-20 145.2 10.2 186 43-236 13-247 (330)
384 COG0488 Uup ATPase components 99.6 2.2E-15 4.8E-20 162.2 12.1 184 37-233 321-521 (530)
385 PRK09270 nucleoside triphospha 99.6 4.9E-15 1.1E-19 143.7 7.8 177 64-242 31-223 (229)
386 COG1129 MglA ABC-type sugar tr 99.6 2.1E-14 4.5E-19 152.2 12.6 173 52-232 274-485 (500)
387 COG4615 PvdE ABC-type sideroph 99.5 8E-15 1.7E-19 149.3 6.3 178 40-230 325-530 (546)
388 cd03272 ABC_SMC3_euk Eukaryoti 99.5 2.5E-14 5.4E-19 139.1 8.6 167 47-222 12-234 (243)
389 cd03271 ABC_UvrA_II The excisi 99.5 6.2E-14 1.3E-18 138.9 11.1 174 49-231 7-260 (261)
390 COG4138 BtuD ABC-type cobalami 99.5 6.3E-15 1.4E-19 136.0 3.0 179 55-236 17-220 (248)
391 KOG0054 Multidrug resistance-a 99.5 4E-14 8.7E-19 164.2 10.3 180 41-236 522-730 (1381)
392 cd03278 ABC_SMC_barmotin Barmo 99.5 4.4E-14 9.5E-19 134.3 7.8 156 54-224 14-191 (197)
393 KOG0065 Pleiotropic drug resis 99.5 8.7E-14 1.9E-18 158.7 10.5 178 48-234 802-1018(1391)
394 cd03274 ABC_SMC4_euk Eukaryoti 99.5 3.4E-14 7.4E-19 136.6 3.9 166 41-223 9-204 (212)
395 cd02024 NRK1 Nicotinamide ribo 99.4 7E-14 1.5E-18 132.0 4.4 156 68-223 1-177 (187)
396 PRK06696 uridine kinase; Valid 99.4 1.4E-13 3.1E-18 133.0 6.4 178 63-241 19-211 (223)
397 cd03279 ABC_sbcCD SbcCD and ot 99.4 2.6E-13 5.7E-18 130.1 7.4 161 54-225 18-210 (213)
398 KOG4203 Armadillo/beta-Catenin 99.4 6.8E-14 1.5E-18 148.8 0.6 279 62-359 40-349 (473)
399 cd03240 ABC_Rad50 The catalyti 99.4 4.1E-13 8.8E-18 128.3 4.2 143 68-223 24-197 (204)
400 COG4178 ABC-type uncharacteriz 99.3 1.5E-12 3.4E-17 140.6 8.3 156 39-207 394-567 (604)
401 COG3845 ABC-type uncharacteriz 99.3 7.9E-12 1.7E-16 130.9 13.3 185 41-234 261-489 (501)
402 TIGR00318 cyaB adenylyl cyclas 99.3 8.8E-12 1.9E-16 116.4 10.2 133 278-411 31-174 (174)
403 KOG0927 Predicted transporter 99.3 5.9E-12 1.3E-16 132.8 8.8 187 40-236 78-308 (614)
404 KOG0927 Predicted transporter 99.3 4E-12 8.6E-17 134.1 7.5 178 38-227 390-585 (614)
405 PRK00349 uvrA excinuclease ABC 99.3 3.7E-11 8E-16 137.2 13.7 72 158-235 836-925 (943)
406 cd03273 ABC_SMC2_euk Eukaryoti 99.3 3E-12 6.4E-17 125.8 3.7 153 68-221 27-241 (251)
407 KOG0062 ATPase component of AB 99.2 6.6E-12 1.4E-16 131.8 5.5 176 39-227 82-274 (582)
408 COG1245 Predicted ATPase, RNas 99.2 5.4E-11 1.2E-15 123.6 10.3 143 59-221 363-529 (591)
409 KOG0065 Pleiotropic drug resis 99.2 3.7E-11 8E-16 137.6 8.9 205 50-271 128-376 (1391)
410 KOG2355 Predicted ABC-type tra 99.2 2.3E-10 5E-15 108.4 11.6 181 41-235 17-235 (291)
411 PRK00635 excinuclease ABC subu 99.1 8.3E-11 1.8E-15 140.2 9.8 76 158-236 815-905 (1809)
412 PLN03046 D-glycerate 3-kinase; 99.1 7.7E-11 1.7E-15 122.7 8.3 162 64-225 210-428 (460)
413 COG1072 CoaA Panthothenate kin 99.1 1.6E-10 3.5E-15 113.8 9.6 146 61-207 77-239 (283)
414 TIGR00630 uvra excinuclease AB 99.1 3.2E-10 6.9E-15 129.4 12.9 75 158-235 834-923 (924)
415 cd03283 ABC_MutS-like MutS-lik 99.1 3.7E-11 8E-16 114.5 3.8 123 51-207 15-141 (199)
416 PLN02796 D-glycerate 3-kinase 99.1 1E-10 2.2E-15 119.6 6.4 120 52-171 81-231 (347)
417 cd00820 PEPCK_HprK Phosphoenol 99.1 1.7E-10 3.6E-15 99.5 6.3 69 50-129 2-77 (107)
418 cd03280 ABC_MutS2 MutS2 homolo 99.1 2.4E-10 5.2E-15 108.6 7.9 144 52-230 16-172 (200)
419 PRK07667 uridine kinase; Provi 99.1 6.7E-11 1.5E-15 112.0 4.0 164 65-237 16-192 (193)
420 KOG0060 Long-chain acyl-CoA tr 99.1 5.9E-10 1.3E-14 118.7 11.0 173 41-223 437-641 (659)
421 KOG0066 eIF2-interacting prote 99.1 2.4E-10 5.3E-15 118.0 7.0 146 40-202 589-749 (807)
422 cd03276 ABC_SMC6_euk Eukaryoti 99.0 1.2E-09 2.6E-14 104.0 9.0 156 52-223 11-190 (198)
423 cd03243 ABC_MutS_homologs The 99.0 9.5E-10 2.1E-14 104.6 7.0 144 57-235 23-177 (202)
424 KOG0062 ATPase component of AB 99.0 2.1E-09 4.4E-14 113.3 9.6 176 41-228 366-559 (582)
425 cd03275 ABC_SMC1_euk Eukaryoti 99.0 1.4E-09 3E-14 106.8 7.5 65 158-224 161-234 (247)
426 PRK06547 hypothetical protein; 98.9 1.8E-09 3.9E-14 100.7 5.6 123 63-199 12-139 (172)
427 COG2401 ABC-type ATPase fused 98.9 9E-09 1.9E-13 106.2 10.2 148 49-214 395-574 (593)
428 cd03284 ABC_MutS1 MutS1 homolo 98.8 8.8E-09 1.9E-13 99.4 7.8 149 50-236 18-180 (216)
429 KOG0064 Peroxisomal long-chain 98.8 1.7E-09 3.8E-14 114.0 2.4 146 49-207 494-662 (728)
430 PRK08233 hypothetical protein; 98.8 1.5E-08 3.2E-13 93.6 7.1 150 66-238 3-159 (182)
431 TIGR03238 dnd_assoc_3 dnd syst 98.7 3.8E-09 8.3E-14 111.7 3.0 62 50-116 19-88 (504)
432 TIGR02858 spore_III_AA stage I 98.7 2.6E-08 5.5E-13 99.5 8.6 37 68-104 113-150 (270)
433 cd03277 ABC_SMC5_euk Eukaryoti 98.7 6.8E-08 1.5E-12 93.1 10.5 33 54-90 15-47 (213)
434 cd03282 ABC_MSH4_euk MutS4 hom 98.7 6.1E-08 1.3E-12 92.9 8.5 124 49-207 15-144 (204)
435 cd03285 ABC_MSH2_euk MutS2 hom 98.7 4.3E-08 9.3E-13 95.1 7.3 147 49-230 16-174 (222)
436 COG1245 Predicted ATPase, RNas 98.7 2.6E-08 5.6E-13 103.9 6.0 61 158-223 219-288 (591)
437 cd03239 ABC_SMC_head The struc 98.6 7.7E-08 1.7E-12 90.2 6.9 64 158-223 100-172 (178)
438 PRK00635 excinuclease ABC subu 98.6 1.8E-07 3.9E-12 112.3 9.9 75 159-236 1706-1795(1809)
439 cd03241 ABC_RecN RecN ATPase i 98.5 7.6E-07 1.7E-11 88.9 12.0 65 158-224 176-248 (276)
440 KOG0066 eIF2-interacting prote 98.5 5.5E-08 1.2E-12 100.9 3.0 180 40-227 267-488 (807)
441 cd03227 ABC_Class2 ABC-type Cl 98.5 3.2E-07 6.9E-12 84.3 7.7 129 58-223 16-155 (162)
442 cd03242 ABC_RecF RecF is a rec 98.5 8.8E-07 1.9E-11 88.2 10.4 68 159-226 190-269 (270)
443 PRK07721 fliI flagellum-specif 98.4 4E-07 8.6E-12 96.7 7.1 48 50-101 146-194 (438)
444 cd03281 ABC_MSH5_euk MutS5 hom 98.3 1.3E-06 2.7E-11 84.3 6.6 103 68-203 31-140 (213)
445 COG0178 UvrA Excinuclease ATPa 98.3 1.2E-06 2.7E-11 96.9 6.9 75 159-236 829-918 (935)
446 cd01130 VirB11-like_ATPase Typ 98.3 1.2E-06 2.7E-11 82.2 5.6 73 56-131 18-97 (186)
447 KOG2702 Predicted panthothenat 98.2 2.9E-07 6.3E-12 88.8 0.8 145 68-214 121-296 (323)
448 PTZ00132 GTP-binding nuclear p 98.2 5E-06 1.1E-10 79.3 8.8 38 159-201 159-201 (215)
449 PRK07196 fliI flagellum-specif 98.2 2.5E-06 5.4E-11 90.3 6.9 78 49-130 142-236 (434)
450 PRK09825 idnK D-gluconate kina 98.2 2E-06 4.2E-11 80.5 5.0 62 62-130 2-70 (176)
451 TIGR01069 mutS2 MutS2 family p 98.1 3.3E-06 7.2E-11 95.6 5.4 116 56-207 314-438 (771)
452 cd07890 CYTH-like_AC_IV-like A 98.1 1.5E-05 3.2E-10 73.9 8.6 129 278-407 29-168 (169)
453 smart00534 MUTSac ATPase domai 98.0 8.3E-06 1.8E-10 76.6 6.2 45 173-217 76-130 (185)
454 PRK13477 bifunctional pantoate 98.0 8.1E-06 1.8E-10 88.2 6.4 44 43-90 265-308 (512)
455 COG1437 CyaB Adenylate cyclase 98.0 3.8E-05 8.3E-10 71.6 9.6 146 262-410 13-175 (178)
456 PRK06793 fliI flagellum-specif 98.0 1E-05 2.2E-10 85.7 6.5 154 50-227 144-301 (432)
457 PRK06002 fliI flagellum-specif 98.0 1.4E-05 3.1E-10 84.8 7.6 55 42-100 144-200 (450)
458 KOG3308 Uncharacterized protei 97.9 7.9E-06 1.7E-10 77.5 3.2 162 66-233 4-178 (225)
459 TIGR02322 phosphon_PhnN phosph 97.8 3.6E-05 7.8E-10 71.3 5.8 31 68-98 3-33 (179)
460 KOG0063 RNAse L inhibitor, ABC 97.7 0.00015 3.2E-09 75.9 10.0 154 50-220 349-529 (592)
461 PF13555 AAA_29: P-loop contai 97.7 3.4E-05 7.3E-10 60.1 4.1 33 57-92 16-50 (62)
462 cd01136 ATPase_flagellum-secre 97.7 5.4E-05 1.2E-09 77.6 6.3 49 49-101 56-105 (326)
463 PRK09862 putative ATP-dependen 97.7 2.4E-05 5.3E-10 84.5 3.5 60 41-103 188-248 (506)
464 PRK10078 ribose 1,5-bisphospho 97.7 5.4E-05 1.2E-09 71.0 5.3 35 68-104 4-38 (186)
465 PRK10416 signal recognition pa 97.7 4.8E-05 1E-09 77.8 5.3 63 68-130 116-192 (318)
466 COG4240 Predicted kinase [Gene 97.7 3.1E-05 6.7E-10 74.9 3.6 106 64-170 48-174 (300)
467 TIGR00767 rho transcription te 97.7 5.4E-05 1.2E-09 79.3 5.7 76 10-90 105-192 (415)
468 PRK03846 adenylylsulfate kinas 97.7 4.1E-05 8.9E-10 72.6 4.3 49 67-115 25-78 (198)
469 PRK08533 flagellar accessory p 97.7 0.00021 4.5E-09 69.7 9.4 37 60-99 21-59 (230)
470 PRK00300 gmk guanylate kinase; 97.7 3.7E-05 8E-10 72.7 3.8 28 61-91 3-30 (205)
471 PRK08149 ATP synthase SpaL; Va 97.6 9.6E-05 2.1E-09 78.3 6.9 51 48-102 137-191 (428)
472 COG3910 Predicted ATPase [Gene 97.6 0.00014 3E-09 68.8 7.0 32 173-204 144-178 (233)
473 cd03286 ABC_MSH6_euk MutS6 hom 97.6 0.00037 8E-09 67.6 10.1 39 49-90 16-54 (218)
474 PRK07594 type III secretion sy 97.6 6.8E-05 1.5E-09 79.5 5.4 50 49-102 142-192 (433)
475 PRK13695 putative NTPase; Prov 97.6 4.4E-05 9.6E-10 70.7 3.5 54 174-228 95-155 (174)
476 TIGR02788 VirB11 P-type DNA tr 97.6 4.4E-05 9.6E-10 77.6 3.5 42 56-100 137-179 (308)
477 PRK09099 type III secretion sy 97.6 9.3E-05 2E-09 78.7 5.8 49 49-101 150-199 (441)
478 PRK11545 gntK gluconate kinase 97.6 4.7E-05 1E-09 70.3 2.9 56 72-130 1-62 (163)
479 cd02022 DPCK Dephospho-coenzym 97.6 5E-05 1.1E-09 70.9 3.1 73 160-242 104-176 (179)
480 cd03287 ABC_MSH3_euk MutS3 hom 97.5 9.3E-05 2E-09 72.0 5.0 46 50-98 18-65 (222)
481 PRK09518 bifunctional cytidyla 97.5 0.00022 4.7E-09 80.5 8.4 61 173-237 150-210 (712)
482 TIGR01026 fliI_yscN ATPase Fli 97.5 0.00013 2.8E-09 77.8 5.8 50 49-102 150-200 (440)
483 TIGR02546 III_secr_ATP type II 97.5 0.00011 2.3E-09 78.0 5.1 49 49-101 132-181 (422)
484 TIGR03497 FliI_clade2 flagella 97.5 0.00017 3.7E-09 76.3 6.4 50 49-102 124-174 (413)
485 PRK01889 GTPase RsgA; Reviewed 97.5 0.00013 2.9E-09 75.7 5.4 64 53-119 185-253 (356)
486 TIGR01360 aden_kin_iso1 adenyl 97.5 2.3E-05 5E-10 72.7 -0.3 62 68-129 5-73 (188)
487 PRK10751 molybdopterin-guanine 97.5 0.00012 2.6E-09 68.6 4.4 35 66-100 6-44 (173)
488 PF13207 AAA_17: AAA domain; P 97.5 8.7E-05 1.9E-09 63.9 3.2 32 68-100 1-32 (121)
489 TIGR03498 FliI_clade3 flagella 97.5 0.00017 3.7E-09 76.3 6.0 50 49-102 127-177 (418)
490 PRK06995 flhF flagellar biosyn 97.4 8.8E-05 1.9E-09 79.7 3.6 39 52-93 245-284 (484)
491 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.00019 4.1E-09 72.3 5.5 62 68-129 163-239 (287)
492 PRK07960 fliI flagellum-specif 97.4 0.00015 3.2E-09 77.2 4.8 50 50-103 163-216 (455)
493 TIGR03496 FliI_clade1 flagella 97.4 0.00026 5.5E-09 74.9 6.4 49 49-101 124-173 (411)
494 cd00879 Sar1 Sar1 subfamily. 97.4 0.0001 2.2E-09 68.5 3.0 34 52-89 9-42 (190)
495 TIGR03263 guanyl_kin guanylate 97.4 0.00013 2.8E-09 67.5 3.7 25 68-92 3-27 (180)
496 cd04155 Arl3 Arl3 subfamily. 97.4 0.00022 4.7E-09 64.9 4.7 24 66-89 14-37 (173)
497 PRK00098 GTPase RsgA; Reviewed 97.4 0.0003 6.5E-09 71.2 6.1 54 62-118 163-227 (298)
498 PRK05541 adenylylsulfate kinas 97.4 0.00018 3.9E-09 66.6 4.1 40 61-103 5-46 (176)
499 PRK05922 type III secretion sy 97.3 0.00028 6.1E-09 74.9 5.9 48 50-101 145-193 (434)
500 PRK08472 fliI flagellum-specif 97.3 0.00026 5.7E-09 75.1 4.7 49 50-102 145-194 (434)
No 1
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=1.1e-101 Score=819.06 Aligned_cols=456 Identities=89% Similarity=1.354 Sum_probs=441.4
Q ss_pred CCCCCCCCCCCCCccccccccceeeeeccCcceeeceeeeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHH
Q 012357 1 MAQDTSSGADSPRRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKT 80 (465)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~k~y~~~~v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKS 80 (465)
||+|+ +++.||+||.||+|+|++|++++++.+|+++++++.+||+.|.+.+++.+++.-+...++++|||+||||||||
T Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKT 79 (656)
T PLN02318 1 MAQDT-SGAESPRRRHGLLKDQVQLVKRKDSDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKT 79 (656)
T ss_pred CCccc-ccCcCcccccchhHHhhhheeeccCCceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHH
Confidence 99999 88999999999999999999999999999999999999999999999999998877778999999999999999
Q ss_pred HHHHHHHhcCCCeeEEEECCeecCccccccccCCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccch
Q 012357 81 VFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSR 160 (465)
Q Consensus 81 TL~r~L~gllP~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qR 160 (465)
||++.|++++|.+|.|++|||+...+.++++||+|.++++.++.++|..++.+..+..|.||+..+.+.+......++.+
T Consensus 80 TLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~ 159 (656)
T PLN02318 80 VFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSR 159 (656)
T ss_pred HHHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCc
Confidence 99999999999899999999986666678899999999999999999999999999999999998877665556678899
Q ss_pred hhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEEecCCcceEEeeCC
Q 012357 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (465)
Q Consensus 161 VlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~ 240 (465)
|+|+||+|++++.+++.+|+++++++++|.++.+|++||+.++|+++.+++++|...|.||+..+|.|+...||++|.|+
T Consensus 160 VVIVEGIyaL~~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~ 239 (656)
T PLN02318 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNK 239 (656)
T ss_pred EEEEechhhccHhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCccccccCCCcccHHHHHHHhcccccccccceeeeccCCCCCCchhhhhhhhhcCCCceEEEEEeeecCCCC
Q 012357 241 FNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSP 320 (465)
Q Consensus 241 ~~p~~~~~~p~~ilk~~~~~~~~~i~~~l~~~~~~~~~~~~~i~~~p~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~p 320 (465)
|+|+.++.+|+||+|+...+..++|+..|.+...+.+++|+|||+.||..+++++.+|||+|+++|.|.|+|.+|++++|
T Consensus 240 f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~~~~~~~~~~DiYl~~P~~d~~~~~e~LRvR~~~Gk~~Ltyke~i~dgp 319 (656)
T PLN02318 240 FNPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDPETCQSYLRMRNRDGKYSLMFEEWVTDEP 319 (656)
T ss_pred CCCCCCCCCCeEEecCCccccHHHHHHHhhhccccccceeeEEEecCCCCCchhccceEEEEecCCEEEEEEecccccCC
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred eEeeeeeeeeeeeeEeccccccCcEEEEEEEeccceeecCcEEEEehhhhhcCcceEEEeccchhHHHHHhhhhcCccCc
Q 012357 321 FIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRDRLYVKYVGEQLGLDGSY 400 (465)
Q Consensus 321 ~i~~~~~~f~v~~~il~gl~~~g~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 400 (465)
||++|+..|||++++++||++|||+++|+++|.+++|++|+++|++||+|+|+++|+||||.+|+.|.++|++|||+|+|
T Consensus 320 ~ii~pk~~fEv~v~~~~gL~aLGy~~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~ 399 (656)
T PLN02318 320 FIISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSY 399 (656)
T ss_pred eecCcceeEEEeeehHhHHHHcCCceEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhhcccccCCChhhhccccccccccCCcHHHhhhhhhhhhcccccc
Q 012357 401 VPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRTKYLSR 457 (465)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (465)
||+|||||||||||++|+|+||||||+|||+|+++||||||||+||||||||||+++
T Consensus 400 i~~SYlE~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (656)
T PLN02318 400 IPRTYIEQIQLEKLVNEVMALPEDLKTKLSLDDDLVSSPKEALSRASADRRNKNLKS 456 (656)
T ss_pred ccccHHHHHHHHHhHHHHhhccHHhhhhcccccccccCcHHHhhhhhhhhhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999986
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-43 Score=347.48 Aligned_cols=257 Identities=20% Similarity=0.265 Sum_probs=205.0
Q ss_pred eeeEeeeC-----cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 012357 41 DTLSFEKG-----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (465)
Q Consensus 41 ~~ls~~~g-----~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------- 104 (465)
+++|+.|. ..+|+++|||+|++|+ |+||+|+||||||||+|+++++. |++|.|.+||.++.
T Consensus 5 ~~vsK~~~~~~~~~~~al~~vsL~I~~Ge---I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 5 ENVSKTFGQTGTGTVTALDDVSLEIPKGE---IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred EeeeeeeccCCCCceeeeccceEEEcCCc---EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 44555554 3789999999999999 99999999999999999999999 99999999998754
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccccccccc---cccccccCc--cccc-------cccchhhhhHhHHhhhh
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY--RTLE-------VPSSRIVIIEGIYALSE 172 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~--~~~~-------l~~qRVlIaegl~aL~d 172 (465)
|++|||+||||+++...||++|++++++-......... ....+.++. +... ..+|||.||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL----- 156 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL----- 156 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH-----
Confidence 57899999999999999999999998653322111100 011122221 1111 134999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEEeeCCCC
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~~ 242 (465)
+.+|.+++|||+||+|||.+...| +++++++ |.|| |++++++||||++|++|+++++|...|+
T Consensus 157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v------- 229 (339)
T COG1135 157 ANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV------- 229 (339)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh-------
Confidence 999999999999999999986655 5788776 9999 9999999999999999999999999999
Q ss_pred CCCccCCccccccCCCcccHHHHHHHhcccccccccceeeeccCCCCCCchhhhhhhhhcCCCceEEEEEeeecCCCCeE
Q 012357 243 PFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFI 322 (465)
Q Consensus 243 p~~~~~~p~~ilk~~~~~~~~~i~~~l~~~~~~~~~~~~~i~~~p~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~p~i 322 (465)
|.+| ++++|++++....+.. +|+.. .. -+. ..++..++|.|.|+.++.|++
T Consensus 230 ----F~~P------k~~~t~~fi~~~~~~~-------------~~~~~----~~-~l~-~~~~~~~rl~f~g~~~~~pli 280 (339)
T COG1135 230 ----FANP------KHAITQEFIGETLEID-------------LPEEL----LE-RLE-SGDGPLLRLTFTGESADQPLL 280 (339)
T ss_pred ----hcCc------chHHHHHHHHhhcccc-------------CcHHH----Hh-hhc-cCCceEEEEEecCccccchHH
Confidence 7788 8999999888766432 11111 00 001 235688999999999999999
Q ss_pred eeeeeeeeeeeeEeccccc
Q 012357 323 ISPRITFEVSVRLLGGLMA 341 (465)
Q Consensus 323 ~~~~~~f~v~~~il~gl~~ 341 (465)
++..++|+|++|||+|.+.
T Consensus 281 s~~~~~~~v~~nIl~G~I~ 299 (339)
T COG1135 281 SEVARRFGVDVNILSGNID 299 (339)
T ss_pred HHHHHHhCCceEEEecchh
Confidence 9999999999999999853
No 3
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-38 Score=295.59 Aligned_cols=204 Identities=21% Similarity=0.239 Sum_probs=166.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.||...+|++||+++++|+ +++|+||||||||||+|||+++. |++|.|.+||.... |+++||
T Consensus 5 i~~l~K~fg~~~VLkgi~l~v~~Ge---vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 5 IKNLSKSFGDKEVLKGISLSVEKGE---VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EEeeeEEeCCeEEecCcceeEcCCC---EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 4678999999999999999999999 99999999999999999999999 99999999997542 568999
Q ss_pred ccCCCCCCccchHHHHHHhhhc---cc-cccccccccccccccCcc--cccc-------ccchhhhhHhHHhhhhccCcc
Q 012357 111 NFDDPRLTDYDTLLENIRGLKE---GK-AVQVPIYDFKSSSRIGYR--TLEV-------PSSRIVIIEGIYALSEKLRPL 177 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~---~~-~~~~p~~d~~~~~~~~~~--~~~l-------~~qRVlIaegl~aL~d~~~p~ 177 (465)
+||++++|+++|+.+|+..... +. +.+.........++++.. ...+ ..|||+||||+ +++|.
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARAL-----aM~P~ 156 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL-----AMDPK 156 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHH-----cCCCC
Confidence 9999999999999999987421 11 111111122223333321 1112 23999999999 99999
Q ss_pred eeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEEeeCCCCCCCccC
Q 012357 178 IDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQ 248 (465)
Q Consensus 178 LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~~p~~~~~ 248 (465)
+.++|||||+|||+++.++ +++++++|+|. |..+++++|||+.|++|.|++++++.++ |.
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~-----------f~ 225 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF-----------FD 225 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHH-----------hc
Confidence 9999999999999987655 58899999998 8999999999999999999999988777 77
Q ss_pred CccccccCCCcccHHHHHHH
Q 012357 249 NPTYILKSTRPVTVDEIKAV 268 (465)
Q Consensus 249 ~p~~ilk~~~~~~~~~i~~~ 268 (465)
+| +.+-+++|+..+
T Consensus 226 ~p------~~~R~~~FL~~i 239 (240)
T COG1126 226 NP------KSERTRQFLSKI 239 (240)
T ss_pred CC------CCHHHHHHHHhh
Confidence 77 777777777653
No 4
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3e-32 Score=279.11 Aligned_cols=258 Identities=17% Similarity=0.223 Sum_probs=190.2
Q ss_pred eeeeEeeeC----cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 012357 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (465)
Q Consensus 40 ~~~ls~~~g----~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------- 104 (465)
.+++++.|+ ...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++.
T Consensus 4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Ge---i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQ---IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred EEEEEEEECCCCcceEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 356777774 2579999999999999 99999999999999999999999 99999999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhcccccccc---ccccccccccCcc------cccc---ccchhhhhHhHHhhhh
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGYR------TLEV---PSSRIVIIEGIYALSE 172 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~~------~~~l---~~qRVlIaegl~aL~d 172 (465)
++.++|+||++++++..|+.+|+.+.......... ..-....+.++.. ...+ ..|||.||+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL----- 155 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL----- 155 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH-----
Confidence 34699999999999999999999875421111000 0000111222211 1112 24999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEEeeCCCC
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~~ 242 (465)
..+|.++++||||++||+..... ++++++++ |.|+ ++.+.++||++++|++|++++.|+..++
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v------- 228 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI------- 228 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-------
Confidence 99999999999999999997554 55777665 8888 8899999999999999999999998887
Q ss_pred CCCccCCccccccCCCcccHHHHHHHhcccccccccceeeeccCCCCCCchhhhhhhhh-c--CCCceEEEEEeeecCCC
Q 012357 243 PFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRM-R--NRDGKYNLMFEEWVTDS 319 (465)
Q Consensus 243 p~~~~~~p~~ilk~~~~~~~~~i~~~l~~~~~~~~~~~~~i~~~p~~~~~~~~~~~i~~-~--~~~~~~~l~~~~~~~~~ 319 (465)
+.+| +...+..++...... ..|+... ..++. . ..+..+.+.|.|..+..
T Consensus 229 ----~~~p------~~~~~~~~~~~~~~~-------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~ 280 (343)
T TIGR02314 229 ----FSHP------KTPLAQKFIRSTLHL-------------SIPEDYQ-----ERLQATPFADSVPMVRLEFTGQTVDA 280 (343)
T ss_pred ----HcCC------CcHHHHHHHhhcccc-------------cCChhHH-----hhcccccCCCcceEEEEEEcCCCCCc
Confidence 3344 444444444432211 0111100 00110 0 12357899999999999
Q ss_pred CeEeeeeeeeeeeeeEecccc
Q 012357 320 PFIISPRITFEVSVRLLGGLM 340 (465)
Q Consensus 320 p~i~~~~~~f~v~~~il~gl~ 340 (465)
|+++...++|+|+++||+|.+
T Consensus 281 ~~~~~~~~~~~~~~~il~~~~ 301 (343)
T TIGR02314 281 PLLSQTARRFNVDNSILSSQM 301 (343)
T ss_pred hHHHHHHHHhCCcEEEEEeee
Confidence 999999999999999998874
No 5
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=5.9e-31 Score=252.04 Aligned_cols=190 Identities=15% Similarity=0.220 Sum_probs=155.7
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------ccc
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----------~~~ 107 (465)
-.++++++||.+.++++|+|++++|+ +++|+||||||||||+|+|.|++ |++|+|.++|.++. +++
T Consensus 10 ~vr~v~~~fG~~~Ild~v~l~V~~Ge---i~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 10 EVRGVTKSFGDRVILDGVDLDVPRGE---ILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKR 86 (263)
T ss_pred EEeeeeeecCCEEEecCceeeecCCc---EEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhh
Confidence 35779999999999999999999999 99999999999999999999999 99999999999864 467
Q ss_pred cccccCCCCCCccchHHHHHHhhhccc-cccccccc---cccccccCccc-------cccc---cchhhhhHhHHhhhhc
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGK-AVQVPIYD---FKSSSRIGYRT-------LEVP---SSRIVIIEGIYALSEK 173 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~-~~~~p~~d---~~~~~~~~~~~-------~~l~---~qRVlIaegl~aL~d~ 173 (465)
+|++||+-.+|+.+||+||++++...+ ........ ....+.++... ..++ ..|+.+|||+ +
T Consensus 87 ~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAi-----a 161 (263)
T COG1127 87 MGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAI-----A 161 (263)
T ss_pred eeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHH-----h
Confidence 999999999999999999999965322 21111100 00111222111 1111 2899999999 9
Q ss_pred cCcceeeeeeeecCccHHH---HHHHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 174 LRPLIDLRVSVTGGVHFDL---VKRVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l---~rrIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
++|.+.++||||+|+||.. +..+++++++. |.|+ ++.+..+||+++++++|+|+..|+.+++.
T Consensus 162 ldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 162 LDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred cCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 9999999999999999985 56778888877 8887 78899999999999999999999999984
No 6
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2e-30 Score=247.71 Aligned_cols=188 Identities=19% Similarity=0.248 Sum_probs=152.2
Q ss_pred eeeeEeee-CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------ccc
Q 012357 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (465)
Q Consensus 40 ~~~ls~~~-g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----------~~~ 107 (465)
.++++..| +++.+|++|||.|++|| +++|+|+||||||||+|+|+|+. |++|+|.++|..+. +++
T Consensus 6 ~~nl~k~yp~~~~aL~~Vnl~I~~GE---~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 6 VKNLSKTYPGGHQALKDVNLEINQGE---MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred EeeeeeecCCCceeeeeEeEEeCCCc---EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 46788888 88999999999999999 99999999999999999999999 99999999998654 467
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccccccc-------c----cccccccccCcc------cccc---ccchhhhhHhH
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP-------I----YDFKSSSRIGYR------TLEV---PSSRIVIIEGI 167 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p-------~----~d~~~~~~~~~~------~~~l---~~qRVlIaegl 167 (465)
+||+||+|++.+..++.+|+...+-+..-.+. . ..+...++++.. ...+ ..|||.||+++
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL 162 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARAL 162 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHH
Confidence 99999999999999999999876543321110 0 011122333321 1112 34999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
...|.+.+.|||+++|||...+.++ ++++++ |.|+ .+.+.+||+|++-|.+|+|+.+|+..++
T Consensus 163 -----~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el 235 (258)
T COG3638 163 -----VQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235 (258)
T ss_pred -----hcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhh
Confidence 9999999999999999999766554 677654 8998 8899999999999999999998876654
No 7
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=3.4e-30 Score=262.41 Aligned_cols=188 Identities=21% Similarity=0.212 Sum_probs=151.4
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.++++..||...|++|+||+|++|| +++++|||||||||++|+|+|+. |++|.|.++|.++. +|.+||+||
T Consensus 8 i~~v~k~yg~~~av~~isl~i~~Ge---f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 8 IRNVSKSFGDFTAVDDISLDIKKGE---FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred EEeeeeecCCeeEEecceeeecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeec
Confidence 4668999999999999999999999 99999999999999999999999 99999999999865 578999999
Q ss_pred CCCCCccchHHHHHHhhhc-cccccccc---cccccccccCc------cccc---cccchhhhhHhHHhhhhccCcceee
Q 012357 114 DPRLTDYDTLLENIRGLKE-GKAVQVPI---YDFKSSSRIGY------RTLE---VPSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~-~~~~~~p~---~d~~~~~~~~~------~~~~---l~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
+..+||++||.+||++.++ ........ .-....+.++. .... ...|||++|||+ ..+|.+++
T Consensus 85 ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL-----~~~P~vLL 159 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARAL-----VPEPKVLL 159 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHh-----hcCcchhh
Confidence 9999999999999999765 21111010 00011111111 0111 234999999999 99999999
Q ss_pred eeeeecCccHHHHHHHHHH---HHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 181 RVSVTGGVHFDLVKRVFRD---IQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 181 lDEpts~LD~~l~rrIlrd---l~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+|||.++||..+..++.++ +.+ .|.|. .+.+..++|||.+|++|+|+..|.+.++
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHH
Confidence 9999999999976655544 333 38877 6778889999999999999999998887
No 8
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.96 E-value=4.6e-30 Score=251.44 Aligned_cols=189 Identities=15% Similarity=0.158 Sum_probs=152.2
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~v 111 (465)
.++++|.|+.+.+++++||++++|+ +++|+||||||||||+|+|+|++ |.+|.|.+||.++. .+.++|+
T Consensus 5 ~~~ls~~y~~~~il~~ls~~i~~G~---i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 5 VENLSFGYGGKPILDDLSFSIPKGE---ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred EEEEEEEECCeeEEecceEEecCCc---EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 5789999999999999999999999 99999999999999999999999 99999999999764 3579999
Q ss_pred cCCCCCCccchHHHHHHhhhcccccccc---ccccc-c---ccccCc--------cccc-cccchhhhhHhHHhhhhccC
Q 012357 112 FDDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFK-S---SSRIGY--------RTLE-VPSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l~~~~~~~~p---~~d~~-~---~~~~~~--------~~~~-l~~qRVlIaegl~aL~d~~~ 175 (465)
+|.+...+..||++.+.+.+........ ..|.. . .+..+. ..++ ...|||+||+++ +-+
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArAL-----aQ~ 156 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARAL-----AQE 156 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHH-----hcC
Confidence 9999888899999999887543211111 11110 0 011110 1111 134999999999 999
Q ss_pred cceeeeeeeecCccHHHHH---HHHHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 176 PLIDLRVSVTGGVHFDLVK---RVFRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~r---rIlrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
|.++++||||+.||+.... ++++++++ +|.|+ .+.+.+|||+++.|.+|.++..|.+.+++
T Consensus 157 ~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 157 TPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred CCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 9999999999999998654 45578774 59988 78899999999999999999999876664
No 9
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=8e-30 Score=244.87 Aligned_cols=188 Identities=16% Similarity=0.177 Sum_probs=146.3
Q ss_pred eeeEeeeCcEE----EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------ccc
Q 012357 41 DTLSFEKGFFI----VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRI 107 (465)
Q Consensus 41 ~~ls~~~g~~~----aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ 107 (465)
+|+++.|+... ++++|||++.+|+ ++||+|+||||||||+++|+|+. |++|.|.++|.... .+.
T Consensus 7 ~nl~~~y~~~~~~~~~l~~VS~~i~~Ge---~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~ 83 (252)
T COG1124 7 RNLSIVYGGGKFAFHALNNVSLEIERGE---TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRP 83 (252)
T ss_pred eceEEEecCCcchhhhhcceeEEecCCC---EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccc
Confidence 56667776555 9999999999999 99999999999999999999999 99999999997654 346
Q ss_pred cccccCCCC--CCccchHHHHHHhhhccccccc-cccccccccccCc----------cccccccchhhhhHhHHhhhhcc
Q 012357 108 IDGNFDDPR--LTDYDTLLENIRGLKEGKAVQV-PIYDFKSSSRIGY----------RTLEVPSSRIVIIEGIYALSEKL 174 (465)
Q Consensus 108 ig~vfQ~p~--l~~~~tv~enL~~l~~~~~~~~-p~~d~~~~~~~~~----------~~~~l~~qRVlIaegl~aL~d~~ 174 (465)
+.|+||||. +.|..|+.+.|..+........ ........+.++. +-.-...|||+||+|+ .+
T Consensus 84 VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL-----~~ 158 (252)
T COG1124 84 VQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARAL-----IP 158 (252)
T ss_pred eeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHh-----cc
Confidence 889999984 6888999999987654211100 0001111111111 1011124999999999 99
Q ss_pred CcceeeeeeeecCccHHHHH---HHHHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 175 RPLIDLRVSVTGGVHFDLVK---RVFRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 175 ~p~LdllDEpts~LD~~l~r---rIlrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+|.++++||||++||+.... .++.++++ +|.|. ..++.++|||+++|++|.+++.++..++.
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999999998654 45566655 47787 88999999999999999999999999985
No 10
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.1e-30 Score=243.11 Aligned_cols=201 Identities=17% Similarity=0.179 Sum_probs=160.2
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC---C---CeeEEEECCeecC--------
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS-------- 104 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---P---~sG~I~lDg~~~~-------- 104 (465)
-.+++++.||.+.||++||+.|+++. |++++||||||||||+|+++... | -.|.|.++|.++.
T Consensus 9 ~~~~l~~yYg~~~aL~~i~l~i~~~~---VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 9 EVRDLNLYYGDKHALKDINLDIPKNK---VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred EecceeEEECchhhhccCceeccCCc---eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 34689999999999999999999999 99999999999999999999986 4 3699999999764
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhcccccccccc---------cccc----ccccCcccccc---ccchhhhhHhH
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY---------DFKS----SSRIGYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~---------d~~~----~~~~~~~~~~l---~~qRVlIaegl 167 (465)
|+++||+||.|+-|+ +++++|+++..+.+....... ...+ .+++......+ ..||+.|||++
T Consensus 86 lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal 164 (253)
T COG1117 86 LRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence 578999999999998 899999999653222111100 0011 11221112222 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEEee
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l---~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~ 238 (465)
+..|.++++||||++|||.. +.+++.+++ +..|| |..+.+++|+.+.++.|++++.++...+
T Consensus 165 -----Av~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i--- 235 (253)
T COG1117 165 -----AVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI--- 235 (253)
T ss_pred -----hcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh---
Confidence 99999999999999999985 456667766 46777 8999999999999999999999999888
Q ss_pred CCCCCCCccCCccccccCCCcccHHHHH
Q 012357 239 NKFNPFTGFQNPTYILKSTRPVTVDEIK 266 (465)
Q Consensus 239 ~~~~p~~~~~~p~~ilk~~~~~~~~~i~ 266 (465)
|.+| +++.|.+.|.
T Consensus 236 --------F~~P------~~~~TedYis 249 (253)
T COG1117 236 --------FTNP------KHKRTEDYIS 249 (253)
T ss_pred --------hcCc------cHHHHHHHhc
Confidence 7788 7777776654
No 11
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=2.2e-30 Score=238.35 Aligned_cols=203 Identities=20% Similarity=0.254 Sum_probs=160.0
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------------
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------------- 104 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------------- 104 (465)
...++...||...+|++|||...+|+ +|.|+|.||||||||+|||+-+. |+.|.|.++|..+.
T Consensus 8 ~v~dlHK~~G~~eVLKGvSL~A~~Gd---VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 8 EVEDLHKRYGEHEVLKGVSLQANAGD---VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ehhHHHhhcccchhhcceeeecCCCC---EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 34667888999999999999999999 99999999999999999999998 99999999998642
Q ss_pred -------ccccccccCCCCCCccchHHHHHHhhhc---ccc-ccccccccccccccCc--ccccc-------ccchhhhh
Q 012357 105 -------SRIIDGNFDDPRLTDYDTLLENIRGLKE---GKA-VQVPIYDFKSSSRIGY--RTLEV-------PSSRIVII 164 (465)
Q Consensus 105 -------~~~ig~vfQ~p~l~~~~tv~enL~~l~~---~~~-~~~p~~d~~~~~~~~~--~~~~l-------~~qRVlIa 164 (465)
|.+++|+||++++|..+|+.+|+....- +.. .+..........+++. +...+ ..||+.||
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 2357999999999999999999876310 100 0000000011111221 11111 24999999
Q ss_pred HhHHhhhhccCcceeeeeeeecCccHHHH---HHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLV---KRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 165 egl~aL~d~~~p~LdllDEpts~LD~~l~---rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+|+ ++.|.+.+.||||++|||++. .+++++++++|+|. |..+.+.+++|+.+++|.|+++|++.++
T Consensus 165 RaL-----ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 165 RAL-----AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred HHH-----hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHH
Confidence 999 999999999999999999975 45679999999998 8999999999999999999999999988
Q ss_pred EeeCCCCCCCccCCccccccCCCcccHHHHH
Q 012357 236 KIINKFNPFTGFQNPTYILKSTRPVTVDEIK 266 (465)
Q Consensus 236 iI~~~~~p~~~~~~p~~ilk~~~~~~~~~i~ 266 (465)
|.|| +.+-.++|+.
T Consensus 240 -----------f~nP------~S~RlkqFls 253 (256)
T COG4598 240 -----------FGNP------QSPRLKQFLS 253 (256)
T ss_pred -----------hcCC------CCHHHHHHHH
Confidence 6677 5555555554
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=1.1e-29 Score=244.85 Aligned_cols=204 Identities=18% Similarity=0.153 Sum_probs=161.8
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~v 111 (465)
.+|+|+.|+++.|++++||+|++|+ +++++|||||||||++|+|++++ |++|.|.+||.++. |+.|||+
T Consensus 4 ~~nvsk~y~~~~av~~v~l~I~~ge---f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 4 FENVSKRYGNKKAVDDVNLTIEEGE---FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred eeeeehhcCCceeeeeeeEEecCCe---EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 3678899999999999999999999 99999999999999999999999 99999999999865 6789999
Q ss_pred cCCCCCCccchHHHHHHhhhccccccccccc---cccccccCc-----------cccccccchhhhhHhHHhhhhccCcc
Q 012357 112 FDDPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY-----------RTLEVPSSRIVIIEGIYALSEKLRPL 177 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~-----------~~~~l~~qRVlIaegl~aL~d~~~p~ 177 (465)
-|.-.+||++|+.+||+....-........+ ......++. +-.....|||.++||+ +.+|.
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL-----AadP~ 155 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL-----AADPP 155 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH-----hcCCC
Confidence 9999999999999999985332211111000 001111111 1111234999999999 99999
Q ss_pred eeeeeeeecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEEeeCCCCCCCcc
Q 012357 178 IDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGF 247 (465)
Q Consensus 178 LdllDEpts~LD~~l~rrIl---rdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~~p~~~~ 247 (465)
++++|||.+++||....++. ++++++ |+|+ ++.+-.++|++.+|.+|+++..+.++++.
T Consensus 156 ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il----------- 224 (309)
T COG1125 156 ILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL----------- 224 (309)
T ss_pred eEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHH-----------
Confidence 99999999999998766665 444444 9999 88889999999999999999999888883
Q ss_pred CCccccccCCCcccHHHHHHHhccc
Q 012357 248 QNPTYILKSTRPVTVDEIKAVMSKE 272 (465)
Q Consensus 248 ~~p~~ilk~~~~~~~~~i~~~l~~~ 272 (465)
.+| +.+|+++++...
T Consensus 225 ~~P----------an~FV~~f~g~~ 239 (309)
T COG1125 225 ANP----------ANDFVEDFFGES 239 (309)
T ss_pred hCc----------cHHHHHHHhccc
Confidence 344 567788777654
No 13
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.1e-29 Score=255.46 Aligned_cols=259 Identities=18% Similarity=0.239 Sum_probs=184.1
Q ss_pred eeeeEeeeC----cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 012357 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (465)
Q Consensus 40 ~~~ls~~~g----~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------- 104 (465)
.+++++.|+ ...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++.
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Ge---i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGE---IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 467888886 4789999999999999 99999999999999999999999 99999999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccccccccc---cccccccCc------ccccc---ccchhhhhHhHHhhhh
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSE 172 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d 172 (465)
++.++|+||++.+++..|+.+|+.+............. ....+.++. ....+ ..||+.||+++
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL----- 155 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARAL----- 155 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH-----
Confidence 35699999999999889999999875321111000000 001111111 11112 24999999999
Q ss_pred ccCcceeeeeeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEEeeCCCC
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~~ 242 (465)
..+|.++++||||++||+.... +++++++++ |.|+ ++.+.++||++++|++|++...|...++.
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~------ 229 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF------ 229 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH------
Confidence 8999999999999999998755 445666554 8888 78889999999999999999988877763
Q ss_pred CCCccCCccccccCCCcccHHHHHHHhcccccccccceeeeccCCCCCCchhhhhhhhh---cCCCceEEEEEeeecCCC
Q 012357 243 PFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRM---RNRDGKYNLMFEEWVTDS 319 (465)
Q Consensus 243 p~~~~~~p~~ilk~~~~~~~~~i~~~l~~~~~~~~~~~~~i~~~p~~~~~~~~~~~i~~---~~~~~~~~l~~~~~~~~~ 319 (465)
.+| ....+..++.+.+... .|.. ....++. ...+..+++.|.+.....
T Consensus 230 -----~~~------~~~~~~~~~~~~~~~~-------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (343)
T PRK11153 230 -----SHP------KHPLTREFIQSTLHLD-------------LPED-----YLARLQAEPTTGSGPLLRLEFTGESVDA 280 (343)
T ss_pred -----hCC------CcHHHHHHHhcccccc-------------Cchh-----HhhhcccccccCCCcEEEEEEeCCcccc
Confidence 222 1122222221111000 0000 0000010 113457899999888999
Q ss_pred CeEeeeeeeeeeeeeEeccccc
Q 012357 320 PFIISPRITFEVSVRLLGGLMA 341 (465)
Q Consensus 320 p~i~~~~~~f~v~~~il~gl~~ 341 (465)
|++.....+|+|+++|+.|.+.
T Consensus 281 ~~~~~~~~~~~~~~~i~~~~~~ 302 (343)
T PRK11153 281 PLLSETARRFGVDFNILSGQID 302 (343)
T ss_pred HHHHHHHHHhCCcEEEEecceE
Confidence 9999999999999999988743
No 14
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.2e-29 Score=253.98 Aligned_cols=188 Identities=17% Similarity=0.168 Sum_probs=151.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.||...+++++||++++|| +++|+||||||||||+|+|+|+. |++|.|.++|.+.+ .|.++|+||
T Consensus 6 l~~v~K~yg~~~~l~~i~l~i~~Ge---f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 6 LKNVRKSFGSFEVLKDVNLDIEDGE---FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EeeeEEEcCCceeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeC
Confidence 5788999987779999999999999 99999999999999999999999 99999999999865 478999999
Q ss_pred CCCCCccchHHHHHHhhhccccccccccccc---------c---ccccCccccccccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPIYDFK---------S---SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~---------~---~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+||++||++|+++.++.........++. . .++.+.+......|||++++|+ ..+|.+.++
T Consensus 83 ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAl-----Vr~P~v~L~ 157 (338)
T COG3839 83 NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARAL-----VRKPKVFLL 157 (338)
T ss_pred CccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHH-----hcCCCEEEe
Confidence 9999999999999999765432211111111 1 1111111111234999999999 999999999
Q ss_pred eeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|||.+.||.++.. ..+++++++ |.|. ...+..++|++.+|.+|.|...|.+.++
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHH
Confidence 9999999998644 344556655 7777 5667789999999999999999999888
No 15
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=2.1e-28 Score=235.50 Aligned_cols=179 Identities=18% Similarity=0.223 Sum_probs=136.9
Q ss_pred eeeEeeeC----cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------
Q 012357 41 DTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------- 104 (465)
Q Consensus 41 ~~ls~~~g----~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----------- 104 (465)
++++..|+ ...+|++|||++++|| +++|+||||||||||+++|.|+. |++|.|.++|.++.
T Consensus 5 ~~v~k~y~~~~~~~~~L~~v~l~i~~Ge---~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 5 KNVSKIYGLGGEKVEALKDVNLEIEAGE---FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred eeeEEEeccCCcceEecccceEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 44554443 2689999999999999 99999999999999999999999 99999999998754
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccccc---cccccccccccCcc-------cccc---ccchhhhhHhHHhhh
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGYR-------TLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~~-------~~~l---~~qRVlIaegl~aL~ 171 (465)
++.+||+||++++++.+|+.||+..+..-..... ........+.++.. ...+ ..|||+||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL---- 157 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARAL---- 157 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHH----
Confidence 3569999999999999999999997532111111 00000111111111 1112 34999999999
Q ss_pred hccCcceeeeeeeecCccHHHHH---HHHHHHHHc-CCCH-----HHHHHHHhceEEEccCcEEE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRV-GQEP-----EEIIHQISETVYPMYKAFIE 227 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~-G~TI-----~~vi~~i~d~V~~m~~G~I~ 227 (465)
..+|.+.++||||++||..... .++++++++ |.|+ ...+..+|||++.+.+|.+.
T Consensus 158 -~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 158 -INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred -hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 9999999999999999999755 455777655 8888 56677899999999999843
No 16
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.95 E-value=6.5e-29 Score=230.42 Aligned_cols=182 Identities=21% Similarity=0.227 Sum_probs=147.0
Q ss_pred eeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------cccc
Q 012357 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (465)
Q Consensus 41 ~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----------~~~i 108 (465)
+++++.|+ +..||+||||++++|| ++-|+||||||||||+|.|.+.. |+.|.|.++|+++. |++|
T Consensus 5 ~~V~k~Y~~g~~aL~~vs~~i~~Ge---f~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 5 ENVSKAYPGGREALRDVSFHIPKGE---FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred hhhhhhcCCCchhhhCceEeecCce---EEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 56777785 4669999999999999 99999999999999999999999 99999999999865 5789
Q ss_pred ccccCCCCCCccchHHHHHHhhhccccccccccc---cccccccCc--cccc-------cccchhhhhHhHHhhhhccCc
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY--RTLE-------VPSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~--~~~~-------l~~qRVlIaegl~aL~d~~~p 176 (465)
|++||++.+++..|+++|+++...-.......+. ....+.++. +... .+.|||.||+|+ ..+|
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi-----V~~P 156 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAI-----VNQP 156 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHH-----ccCC
Confidence 9999999999999999999997532111111111 111222222 1111 134999999999 9999
Q ss_pred ceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 177 LIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
.+++.||||+.|||.+.++++ .++++.|.|+ .+.+.++-.++..+.+|++....
T Consensus 157 ~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 157 AVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred CeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999877766 6677789999 78899999999999999987654
No 17
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.2e-29 Score=245.11 Aligned_cols=189 Identities=17% Similarity=0.203 Sum_probs=149.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe---ecC-----cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY---NDS-----SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~---~~~-----~~~ig~ 110 (465)
.+++++.++...++++|++.|+.|+ ++++.||||||||||+|+|+|++ |+.|.|.++|. +.+ .++||+
T Consensus 5 i~~~~~~~~~~~a~~di~l~i~~Ge---~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 5 INNVKKRFGAFGALDDISLDIKSGE---LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ehhhhhhcccccccccceeeecCCc---EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 3456777888899999999999999 99999999999999999999999 99999999998 433 478999
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccccc--ccccc---cccc---Cc---ccccc---ccchhhhhHhHHhhhhccCc
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPI--YDFKS---SSRI---GY---RTLEV---PSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~--~d~~~---~~~~---~~---~~~~l---~~qRVlIaegl~aL~d~~~p 176 (465)
+|||..+|+.+||.+||+|...-.....+. ..... .+.+ +. ....+ ..|||++|+|+ +..|
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARAL-----A~eP 156 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARAL-----AVEP 156 (345)
T ss_pred EEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHh-----hcCC
Confidence 999999999999999999976332111100 00000 0111 00 01111 24999999999 9999
Q ss_pred ceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 177 LIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.++++|||.++||.....+ -++++.++ |.|. .+.+.++||+|.+|++|+|+..|+..|+.
T Consensus 157 ~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 157 KVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred CeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 9999999999999986544 45666666 7665 78899999999999999999999999983
No 18
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=4.7e-28 Score=243.34 Aligned_cols=188 Identities=18% Similarity=0.195 Sum_probs=151.6
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------ccccccc
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGN 111 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~v 111 (465)
..+++..|+ .+.+|++|||++++|+ ++|++||||||||||+++|+|++ |++|.|.++|++.. ++.+||+
T Consensus 7 ~~~l~k~~~~~~~~l~~vs~~i~~Ge---i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 7 VRNLTKKYGGDKTALDGVSFEVEPGE---IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred ecceEEEeCCCCEEEeceeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 367888999 6999999999999999 99999999999999999999999 99999999998765 3569999
Q ss_pred cCCCCCCccchHHHHHHhhhcccccc---ccccccccccccCc--------ccccc-ccchhhhhHhHHhhhhccCccee
Q 012357 112 FDDPRLTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIGY--------RTLEV-PSSRIVIIEGIYALSEKLRPLID 179 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l~~~~~~~---~p~~d~~~~~~~~~--------~~~~l-~~qRVlIaegl~aL~d~~~p~Ld 179 (465)
+|++.+++.+|+.+++.+...-.... ....-....+.++. ...+. ..||+.||.|+ ..+|.++
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL-----~~~P~ll 158 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALAL-----LHDPELL 158 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHH-----hcCCCEE
Confidence 99999999999999999865322111 00000001111111 11111 24999999999 9999999
Q ss_pred eeeeeecCccHHH---HHHHHHHHHHcC-CCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 180 LRVSVTGGVHFDL---VKRVFRDIQRVG-QEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 180 llDEpts~LD~~l---~rrIlrdl~e~G-~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
++||||+||||.. +++++++++++| .|+ ++.+..+||+|.++++|+++..+...++
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999986 456678888887 688 7889999999999999999999987775
No 19
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6e-28 Score=233.38 Aligned_cols=178 Identities=17% Similarity=0.167 Sum_probs=139.5
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--ccccccccCCC
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDP 115 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--~~~ig~vfQ~p 115 (465)
-.+++++.|+...||+||||++.+|| +++|+||||||||||+|+|+|+. |++|+|.++|.... ...++|+||++
T Consensus 5 ~i~~v~~~f~~~~vl~~i~L~v~~GE---fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 5 EIEGVSKSFGGVEVLEDINLSVEKGE---FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred EEEeeEEEeCceEEeccceeEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 34678889988999999999999999 99999999999999999999999 99999999998763 45799999999
Q ss_pred CCCccchHHHHHHhhhccccccc---cccccccccccCcc------ccccc---cchhhhhHhHHhhhhccCcceeeeee
Q 012357 116 RLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGYR------TLEVP---SSRIVIIEGIYALSEKLRPLIDLRVS 183 (465)
Q Consensus 116 ~l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~~------~~~l~---~qRVlIaegl~aL~d~~~p~LdllDE 183 (465)
.++||.|+.+|+.+......... ........+.++.. ...++ .|||.||+|+ ..+|.++++||
T Consensus 82 ~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL-----~~~P~lLLlDE 156 (248)
T COG1116 82 ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARAL-----ATRPKLLLLDE 156 (248)
T ss_pred cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHH-----hcCCCEEEEcC
Confidence 99999999999998654321111 00011111222211 11121 3999999999 99999999999
Q ss_pred eecCccHHHHHHHH----HHHHHcCCCH------HHHHHHHhceEEEccCc
Q 012357 184 VTGGVHFDLVKRVF----RDIQRVGQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 184 pts~LD~~l~rrIl----rdl~e~G~TI------~~vi~~i~d~V~~m~~G 224 (465)
|.++||..+...+. +-+.+.+.|+ .+.+-.++|||++|.++
T Consensus 157 PFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 157 PFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999998654433 3334558888 67777899999999885
No 20
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.95 E-value=9.8e-28 Score=242.36 Aligned_cols=189 Identities=14% Similarity=0.085 Sum_probs=149.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vf 112 (465)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|++.. ++.+||+|
T Consensus 10 i~~l~k~~~~~~~l~~vsl~i~~Ge---i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~ 86 (306)
T PRK13537 10 FRNVEKRYGDKLVVDGLSFHVQRGE---CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVP 86 (306)
T ss_pred EEeEEEEECCeEEEecceEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEe
Confidence 5678888888899999999999999 99999999999999999999999 99999999999864 35699999
Q ss_pred CCCCCCccchHHHHHHhhhcccccccc---ccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
|++.+++..|+.+|+.+.......... ..-....+..+. ....+ ..||+.||+++ ..+|.+++
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL-----~~~P~lll 161 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARAL-----VNDPDVLV 161 (306)
T ss_pred ccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHH-----hCCCCEEE
Confidence 999999999999999864321111000 000000111111 11112 24999999999 99999999
Q ss_pred eeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 181 RVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 181 lDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+||||++||+...+ +++++++++|.|+ ++.+.++||++++|++|+++..|+..++.
T Consensus 162 LDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 162 LDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999998644 5567776678888 78899999999999999999998877663
No 21
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.6e-27 Score=243.54 Aligned_cols=188 Identities=20% Similarity=0.170 Sum_probs=148.8
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+...+++++||++++|+ +++|+||||||||||+++|+|+. |++|.|.+||.++. ++.++|+||
T Consensus 9 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ 85 (351)
T PRK11432 9 LKNITKRFGSNTVIDNLNLTIKQGT---MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQ 85 (351)
T ss_pred EEeEEEEECCeEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 5678888888889999999999999 99999999999999999999999 99999999998753 467999999
Q ss_pred CCCCCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+|+.+|+.+|+.+........... .-....+..+. ....+ ..|||.|++++ ..+|.++++
T Consensus 86 ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL-----~~~P~lLLL 160 (351)
T PRK11432 86 SYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARAL-----ILKPKVLLF 160 (351)
T ss_pred CcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-----HcCCCEEEE
Confidence 999999999999999854311110000 00001111111 11112 24999999999 899999999
Q ss_pred eeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|||+++||+....++ ++++.++ |.|+ .+.+..+||++++|++|++...++..++
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999975554 4555544 8887 6778899999999999999999988876
No 22
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.95 E-value=5e-27 Score=240.49 Aligned_cols=189 Identities=14% Similarity=0.080 Sum_probs=149.8
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vf 112 (465)
.+++++.|+.+.+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.+||+|
T Consensus 44 i~nl~k~y~~~~~l~~is~~i~~Ge---i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~ 120 (340)
T PRK13536 44 LAGVSKSYGDKAVVNGLSFTVASGE---CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP 120 (340)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEe
Confidence 4789999998999999999999999 99999999999999999999999 99999999998754 35699999
Q ss_pred CCCCCCccchHHHHHHhhhcccccccc---ccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
|++.+++..|+.+|+.+.......... ..-....+..+. ....+ ..||+.||+++ ..+|.+++
T Consensus 121 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL-----~~~P~lLi 195 (340)
T PRK13536 121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARAL-----INDPQLLI 195 (340)
T ss_pred CCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 999999999999999864321111000 000001111111 11112 24999999999 99999999
Q ss_pred eeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 181 RVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 181 lDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+||||++||+...+ ++++++.++|.|+ ++.+.++||+++++++|+++..|+..++.
T Consensus 196 LDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 196 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999998654 4556666678888 78899999999999999999999877763
No 23
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.2e-28 Score=227.69 Aligned_cols=185 Identities=18% Similarity=0.276 Sum_probs=145.7
Q ss_pred eeEeeeCcEE-EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------ccccccccC
Q 012357 42 TLSFEKGFFI-VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFD 113 (465)
Q Consensus 42 ~ls~~~g~~~-aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vfQ 113 (465)
+++.+|+..+ +++||||++++|+ |+||.|+|||||||++|+|++++ |++|.|.+||++.. +++||..|.
T Consensus 6 ~l~K~y~~~v~AvrdVSF~ae~Ge---i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~ 82 (245)
T COG4555 6 DLTKSYGSKVQAVRDVSFEAEEGE---ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFG 82 (245)
T ss_pred ehhhhccCHHhhhhheeEEeccce---EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecC
Confidence 4555565544 9999999999999 99999999999999999999999 99999999999864 578999998
Q ss_pred CCCCCccchHHHHHHhhhc-----ccccccccc----cccc----ccccCccccccccchhhhhHhHHhhhhccCcceee
Q 012357 114 DPRLTDYDTLLENIRGLKE-----GKAVQVPIY----DFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~-----~~~~~~p~~----d~~~----~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
...++..+|+++||.++.. +...+...- .+.. ..+.+ +-.....|||.||+|+ ..+|.+.+
T Consensus 83 e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~-~~S~G~kqkV~iARAl-----vh~P~i~v 156 (245)
T COG4555 83 ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVG-EFSTGMKQKVAIARAL-----VHDPSILV 156 (245)
T ss_pred CcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHh-hhchhhHHHHHHHHHH-----hcCCCeEE
Confidence 8899999999999998642 111111110 0111 11111 1122345999999999 99999999
Q ss_pred eeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 181 RVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 181 lDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+|||++|||....+. +++.+++.|+++ |+.++.+||+|+++++|.++..|+...+
T Consensus 157 lDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l 220 (245)
T COG4555 157 LDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220 (245)
T ss_pred EcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHH
Confidence 999999999986554 456666678877 8999999999999999999998876654
No 24
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.6e-27 Score=229.54 Aligned_cols=190 Identities=17% Similarity=0.200 Sum_probs=149.8
Q ss_pred eeeeeEeeeCcE-EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccc
Q 012357 39 IEDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRII 108 (465)
Q Consensus 39 v~~~ls~~~g~~-~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~i 108 (465)
..++++|.|+.. .+++++|+.+++|+ .++|+|+||||||||+++++|++ |++|.|.++|.+.. ++++
T Consensus 5 ~~~~l~~~y~~~~~~l~~v~~~i~~Ge---~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 5 EAENLSFRYPGRKAALKDVSLEIEKGE---RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred EEEEEEEEcCCCceeeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 467899999664 99999999999999 99999999999999999999999 99999999998744 5789
Q ss_pred ccccCCCCC-CccchHHHHHHhhhccccccccccc---cccccccC------ccccc---cccchhhhhHhHHhhhhccC
Q 012357 109 DGNFDDPRL-TDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIG------YRTLE---VPSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 109 g~vfQ~p~l-~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~------~~~~~---l~~qRVlIaegl~aL~d~~~ 175 (465)
|++||+|+. +-..||.+.+++...+........+ ....+.++ ..... ...|||+||..+ +++
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL-----a~~ 156 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL-----AMG 156 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH-----HcC
Confidence 999999953 4567999999997543322211100 00011111 11111 234999999999 999
Q ss_pred cceeeeeeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
|.++++||||++||+...+.+ +++++++ |.|+ ++.+..+||++++|.+|+++.+|+++++.
T Consensus 157 P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~ 227 (235)
T COG1122 157 PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227 (235)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHh
Confidence 999999999999999976554 5777766 6788 88999999999999999999999877663
No 25
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.95 E-value=3.4e-27 Score=242.88 Aligned_cols=189 Identities=17% Similarity=0.177 Sum_probs=149.4
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+.+.+|+++||++++|+ +++|+||||||||||+++|+|+. |++|.|.+||.+.. ++.++|+||
T Consensus 7 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 7 IDNIRKRFGAFTALKDISLSVKKGE---FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEeCCeEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 4678888888889999999999999 99999999999999999999999 99999999998764 467999999
Q ss_pred CCCCCccchHHHHHHhhhcccccccccc---ccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPIY---DFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~~---d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+|+.+|+.+|+.+............ -....+.++. ....+ ..|||.|++++ ..+|.++++
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL-----~~~P~llLL 158 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARAL-----ATSPGLLLL 158 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 9999999999999998643211100000 0001111111 11112 24999999999 999999999
Q ss_pred eeeecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 182 VSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 182 DEpts~LD~~l~rrIl---rdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
|||++++|+....++. +++.++ |.|+ .+.+..+||++++|++|+++..|+..++.
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999998755544 555544 8887 77788999999999999999999887773
No 26
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.2e-27 Score=229.70 Aligned_cols=188 Identities=16% Similarity=0.170 Sum_probs=144.4
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----ccccccccC
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFD 113 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----~~~ig~vfQ 113 (465)
-.+|+++.|++.+||+||||++++|+ +++|+||||||||||+|.|.|++ |.+|.|.++|.+.. +..|||+||
T Consensus 6 ~v~nl~v~y~~~~vl~~i~l~v~~G~---~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 6 EVENLTVSYGNRPVLEDISLSVEKGE---ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred EEeeeEEEECCEeeeeccEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 35789999986689999999999999 99999999999999999999999 99999999998653 357999999
Q ss_pred CC--CCCccchHHHHHHhhhcccccccccc---c----cccccccCcc------cccc---ccchhhhhHhHHhhhhccC
Q 012357 114 DP--RLTDYDTLLENIRGLKEGKAVQVPIY---D----FKSSSRIGYR------TLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 114 ~p--~l~~~~tv~enL~~l~~~~~~~~p~~---d----~~~~~~~~~~------~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
.. +.-...||++.+...+..+......+ + ....++++.. ...+ ..|||+||+|+ +.+
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL-----~~~ 157 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL-----AQN 157 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh-----ccC
Confidence 65 33345799999988643222111111 0 0111222211 1112 23999999999 999
Q ss_pred cceeeeeeeecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 176 PLIDLRVSVTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 176 p~LdllDEpts~LD~~l---~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|.++++|||++++|+.. +.+++++++++|+|| .+.+..++|+|+.+. +++...|+..++
T Consensus 158 p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 158 PDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999986 456778888889999 788899999998875 456677776666
No 27
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.4e-27 Score=243.14 Aligned_cols=188 Identities=15% Similarity=0.120 Sum_probs=148.4
Q ss_pred eeeeEeee-CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----cccccccc
Q 012357 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~-g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vf 112 (465)
.+++++.| +...+|+++||++++|+ +++|+||||||||||+++|+|+. |++|.|.++|.++. ++.++|+|
T Consensus 6 i~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 6 LQAVRKSYDGKTQVIKGIDLDVADGE---FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEeEEEEeCCCCEEEeeeeEEEcCCC---EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 46788888 77889999999999999 99999999999999999999999 99999999998763 36799999
Q ss_pred CCCCCCccchHHHHHHhhhccccccccccc---cccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
|++.+|+.+|+.+|+.+............. ....+.++. ....+ ..|||.|++++ ..+|.+++
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL-----~~~P~llL 157 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAI-----VREPAVFL 157 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 999999999999999886431111100000 001111111 11112 24999999999 89999999
Q ss_pred eeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 181 RVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 181 lDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+|||+++||+..... .++++.++ |.|+ .+.+..+||++++|++|++...|+..++
T Consensus 158 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 158 FDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 999999999987554 44555554 8888 6778899999999999999999988876
No 28
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=6.3e-28 Score=231.92 Aligned_cols=189 Identities=18% Similarity=0.241 Sum_probs=151.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.++++..||+..|+++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+++ +..++-
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Ge---i~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGE---IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCe---EEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcccee
Confidence 5788999999999999999999999 99999999999999999999999 99999999999875 234677
Q ss_pred ccCCCCCCccchHHHHHHhhhccc-----ccccccc----------ccccccccCcc--------cccccc-chhhhhHh
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGK-----AVQVPIY----------DFKSSSRIGYR--------TLEVPS-SRIVIIEG 166 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~-----~~~~p~~----------d~~~~~~~~~~--------~~~l~~-qRVlIaeg 166 (465)
.||++.+|+.+||.||+....... ....+.+ .+...+.++.. .+.+.. .++=||+|
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArA 163 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARA 163 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHH
Confidence 999999999999999998642211 0111111 01111222211 122222 56889999
Q ss_pred HHhhhhccCcceeeeeeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 167 IYALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 167 l~aL~d~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+ +.+|.++++|||.+|+.+.... .++++++++ |.|+ |.++..+||||++|+.|+++.+|++++|.
T Consensus 164 L-----a~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 164 L-----ATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred H-----hcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 9 9999999999999999998654 556888875 6888 89999999999999999999999999983
No 29
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=1.2e-26 Score=221.63 Aligned_cols=189 Identities=20% Similarity=0.241 Sum_probs=152.2
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.++++..||..++|++|||++++|+ +++|+|+||||||||+++|+|+. |.+|.|.++|.+++ +..++|
T Consensus 6 v~~l~~~YG~~~~L~gvsl~v~~Ge---iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~ 82 (237)
T COG0410 6 VENLSAGYGKIQALRGVSLEVERGE---IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAY 82 (237)
T ss_pred EEeEeecccceeEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEe
Confidence 4678999999999999999999999 99999999999999999999999 78999999999986 345899
Q ss_pred ccCCCCCCccchHHHHHHhhhccc---ccccc----ccccc--cccccCcc--ccc-cccchhhhhHhHHhhhhccCcce
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGK---AVQVP----IYDFK--SSSRIGYR--TLE-VPSSRIVIIEGIYALSEKLRPLI 178 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~---~~~~p----~~d~~--~~~~~~~~--~~~-l~~qRVlIaegl~aL~d~~~p~L 178 (465)
+||..+.|+.+||+||+....... ..... .|+.- ..++.... .++ ...|.++|++|+ ..+|.+
T Consensus 83 VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL-----m~~Pkl 157 (237)
T COG0410 83 VPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL-----MSRPKL 157 (237)
T ss_pred CcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHH-----hcCCCE
Confidence 999999999999999998743211 11110 12110 11121111 111 234999999999 999999
Q ss_pred eeeeeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 179 DLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 179 dllDEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+++|||+.|+-|..+.+| +++++++ |.|| ...+.+++||.++|.+|+|+.+|+.+++.
T Consensus 158 LLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 158 LLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred EEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 999999999999976655 5777766 7788 67788899999999999999999988873
No 30
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.94 E-value=8.7e-27 Score=239.84 Aligned_cols=189 Identities=16% Similarity=0.147 Sum_probs=148.8
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+...+++++||++++|+ +++|+||||||||||+++|+|++ |++|.|.+||.++. ++.++|+||
T Consensus 5 i~~l~~~~~~~~~l~~isl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 5 IANIKKSFGRTQVLNDISLDIPSGQ---MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEeCCeEEEEEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 4678888888889999999999999 99999999999999999999999 99999999998763 357999999
Q ss_pred CCCCCccchHHHHHHhhhccc----ccccc---ccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcc
Q 012357 114 DPRLTDYDTLLENIRGLKEGK----AVQVP---IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPL 177 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~----~~~~p---~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~ 177 (465)
++.+++.+|+.+|+.+..... ..... ..-....+.++. ....+ ..|||.|++++ ..+|.
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL-----~~~P~ 156 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL-----AVEPQ 156 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH-----hcCCC
Confidence 999999999999998753210 00000 000001111111 11112 24999999999 89999
Q ss_pred eeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 178 IDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 178 LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
++++|||+++||+..... +++++.++ |.|+ .+.+..+||++++|++|+++..|+..++.
T Consensus 157 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999987554 44555555 8887 77889999999999999999999888773
No 31
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.2e-26 Score=224.79 Aligned_cols=188 Identities=18% Similarity=0.259 Sum_probs=145.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------cccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----------~~~i 108 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.+
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGE---ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 4678889988889999999999999 99999999999999999999999 89999999998642 2458
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc-cccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccC
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGK-AVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~-~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
+|+||++.+++..|+.+|+.+..... ...... .-....+..+. ....+ ..|||.|++++ ..+
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al-----~~~ 154 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARAL-----ALD 154 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-----hcC
Confidence 99999999999899999998643210 000000 00000111111 11112 24999999999 899
Q ss_pred cceeeeeeeecCccHHHHHHH---HHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rrI---lrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|.++++||||+++|+.....+ ++++.+ .|.|+ .+.+..+||++++|.+|++...++..++
T Consensus 155 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 155 PELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999875554 456555 48887 6778899999999999999988877665
No 32
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.94 E-value=9.2e-27 Score=241.30 Aligned_cols=188 Identities=20% Similarity=0.229 Sum_probs=148.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+...+++++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+||
T Consensus 17 l~~l~~~~~~~~~l~~vsl~i~~Ge---~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ 93 (375)
T PRK09452 17 LRGISKSFDGKEVISNLDLTINNGE---FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQ 93 (375)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEec
Confidence 5688889988899999999999999 99999999999999999999999 99999999999763 467999999
Q ss_pred CCCCCccchHHHHHHhhhccccccccccc---cccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+|+.+|+.+|+.+............. ....+.++. ....+ ..|||.|++++ ..+|.++++
T Consensus 94 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL-----~~~P~llLL 168 (375)
T PRK09452 94 SYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV-----VNKPKVLLL 168 (375)
T ss_pred CcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 99999999999999985431111000000 000111111 11112 34999999999 899999999
Q ss_pred eeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|||+++||+....++ ++++.++ |.|+ .+.+..+||++++|++|++...++..++
T Consensus 169 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 169 DESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999875544 4555554 8887 6778889999999999999999988776
No 33
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.94 E-value=1.1e-26 Score=239.65 Aligned_cols=189 Identities=14% Similarity=0.131 Sum_probs=149.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCe--eEEEECCeecC-----ccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI--AVITMDNYNDS-----SRIIDGN 111 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~s--G~I~lDg~~~~-----~~~ig~v 111 (465)
.+++++.|+...+|+++||++++|+ +++|+||||||||||+++|+|+. |++ |.|.++|.+.. ++.++|+
T Consensus 8 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 8 IDHLRVAYGANTVLDDLSLEIEAGE---LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEECCeEEEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 5678888888889999999999999 99999999999999999999999 999 99999998753 3579999
Q ss_pred cCCCCCCccchHHHHHHhhhccccccccccc---cccccccCc------ccccc---ccchhhhhHhHHhhhhccCccee
Q 012357 112 FDDPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLID 179 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ld 179 (465)
||++.+|+.+|+.+|+.+............. ....+.++. ....+ ..|||.|++++ ..+|.++
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL-----~~~P~ll 159 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAI-----AIEPDVL 159 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHH-----hcCCCEE
Confidence 9999999999999999975432111100000 001111111 11112 24999999999 9999999
Q ss_pred eeeeeecCccHHHHHHH---HHHHHHc--CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 180 LRVSVTGGVHFDLVKRV---FRDIQRV--GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 180 llDEpts~LD~~l~rrI---lrdl~e~--G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
++|||+++||+....++ ++++.++ |.|+ .+.+..+||++++|++|+++..|+..++.
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999875544 4566655 7777 67788999999999999999999888773
No 34
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.2e-26 Score=231.32 Aligned_cols=180 Identities=19% Similarity=0.314 Sum_probs=140.1
Q ss_pred CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCC------CeeEEEECCeecC-----------cccccc
Q 012357 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS-----------SRIIDG 110 (465)
Q Consensus 48 g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP------~sG~I~lDg~~~~-----------~~~ig~ 110 (465)
|...|++||||++.+|| ++||+|.|||||||+++.|.|++| .+|+|.++|.++. .+.|+|
T Consensus 16 g~v~av~~vs~~i~~GE---~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~m 92 (316)
T COG0444 16 GVVKAVDGVSFELKKGE---ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAM 92 (316)
T ss_pred ccEEEEeceeEEEcCCc---EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEE
Confidence 34789999999999999 999999999999999999999994 3689999998542 357999
Q ss_pred ccCCC--CCCccchHHHHHHhhhc-cccc--cc--cccccccccccCcc---------ccccc---cchhhhhHhHHhhh
Q 012357 111 NFDDP--RLTDYDTLLENIRGLKE-GKAV--QV--PIYDFKSSSRIGYR---------TLEVP---SSRIVIIEGIYALS 171 (465)
Q Consensus 111 vfQ~p--~l~~~~tv~enL~~l~~-~~~~--~~--p~~d~~~~~~~~~~---------~~~l~---~qRVlIaegl~aL~ 171 (465)
+||+| .+.+..++.+.+..... .... +. ........+.++.. ...++ .|||+||-|+
T Consensus 93 IfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmal---- 168 (316)
T COG0444 93 IFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMAL---- 168 (316)
T ss_pred EEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHH----
Confidence 99998 46788899888876433 1111 00 00111112222211 11111 2999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.+++.||||++||+....+++ +++++ .|.++ +.++.++||+|++||.|+|++.|+..++
T Consensus 169 -a~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i 241 (316)
T COG0444 169 -ALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241 (316)
T ss_pred -hCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHH
Confidence 9999999999999999998766554 66665 58888 8999999999999999999999999988
No 35
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=246.06 Aligned_cols=205 Identities=18% Similarity=0.215 Sum_probs=155.1
Q ss_pred cceeeeeccCcceeeceeeeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEEC
Q 012357 21 DQVQLVKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD 99 (465)
Q Consensus 21 ~~~~l~~~~~~k~y~~~~v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lD 99 (465)
.++.+..++.+|.|....-. +....+...|+++|||++.+|| ++||+|+||||||||+|+|+|++ |++|.|.++
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~--~~~~~~~~~Av~~VSf~l~~GE---~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~ 351 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGL--FVRERGEVKAVDDVSFDLREGE---TLGLVGESGSGKSTLARILAGLLPPSSGSIIFD 351 (539)
T ss_pred cCceeEeeeeeeeecccccc--ccccccceeeeeeeeeEecCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEe
Confidence 56678888888888754411 1111345789999999999999 99999999999999999999999 999999999
Q ss_pred CeecC---------ccccccccCCCC--CCccchHHHHHHhhhcccc-c---cccccccccccccCc----------ccc
Q 012357 100 NYNDS---------SRIIDGNFDDPR--LTDYDTLLENIRGLKEGKA-V---QVPIYDFKSSSRIGY----------RTL 154 (465)
Q Consensus 100 g~~~~---------~~~ig~vfQ~p~--l~~~~tv~enL~~l~~~~~-~---~~p~~d~~~~~~~~~----------~~~ 154 (465)
|.+.. ++.+-|+||||. +.+..|+.+.+.....-.. . .....-....+.++. +..
T Consensus 352 g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elS 431 (539)
T COG1123 352 GQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELS 431 (539)
T ss_pred CcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcC
Confidence 97621 356789999984 6889999999988543111 0 000000000111111 111
Q ss_pred ccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCc
Q 012357 155 EVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 155 ~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G 224 (465)
....|||.||+|+ +.+|.+++||||+++||+..... ++++++++ |.|. +.++.++||||.+|++|
T Consensus 432 GGQrQRvaIARAL-----a~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G 506 (539)
T COG1123 432 GGQRQRVAIARAL-----ALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506 (539)
T ss_pred cchhHHHHHHHHH-----hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECC
Confidence 1234999999999 99999999999999999997654 55777766 8888 89999999999999999
Q ss_pred EEEecCCcceE
Q 012357 225 FIEPDLQTAHI 235 (465)
Q Consensus 225 ~I~~~g~~aDI 235 (465)
+|++.|+..++
T Consensus 507 ~iVE~G~~~~v 517 (539)
T COG1123 507 RIVEEGPTEKV 517 (539)
T ss_pred eEEEeCCHHHH
Confidence 99999966665
No 36
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.94 E-value=2.9e-26 Score=231.13 Aligned_cols=188 Identities=14% Similarity=0.085 Sum_probs=146.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vf 112 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|+|
T Consensus 7 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 83 (303)
T TIGR01288 7 LVGVSKSYGDKVVVNDLSFTIARGE---CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVP 83 (303)
T ss_pred EEeEEEEeCCeEEEcceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEe
Confidence 4678888888889999999999999 99999999999999999999999 99999999998753 35699999
Q ss_pred CCCCCCccchHHHHHHhhhcccccccc---ccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
|++.+++..|+.+|+.+.......... ..-....+..+. ....+ ..||+.||+++ ..+|.+++
T Consensus 84 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al-----~~~p~lll 158 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARAL-----INDPQLLI 158 (303)
T ss_pred ccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 999999889999999753211101000 000001111111 11112 24999999999 89999999
Q ss_pred eeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 181 RVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 181 lDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+||||++||+.... ++++++.++|.|+ .+.+..+||+++.|.+|++...++..++
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 222 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHAL 222 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999998655 4556666678888 7788999999999999999988887765
No 37
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.94 E-value=2.3e-26 Score=222.70 Aligned_cols=188 Identities=18% Similarity=0.261 Sum_probs=145.4
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. +..++|
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 3 VRGLTKRFGGLVALDDVSFSVRPGE---IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred eeeeEEEECCEEEecCceEEecCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 3678888888889999999999999 99999999999999999999999 89999999998753 235899
Q ss_pred ccCCCCCCccchHHHHHHhhhcccccc----------ccc---cccccccccCcc------cccc---ccchhhhhHhHH
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQ----------VPI---YDFKSSSRIGYR------TLEV---PSSRIVIIEGIY 168 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~----------~p~---~d~~~~~~~~~~------~~~l---~~qRVlIaegl~ 168 (465)
+||++.+++..|+.+|+.+........ ... .-....+..+.. ...+ ..||+.|++++
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al- 158 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL- 158 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHH-
Confidence 999999999999999997653211000 000 000011111111 1112 23999999999
Q ss_pred hhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 169 ALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 169 aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+..... +++++.++|.|+ .+.+..+||+++++++|++...++..++
T Consensus 159 ----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 159 ----ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred ----hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 88999999999999999986554 456666578887 6778899999999999999988877665
No 38
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.7e-26 Score=238.04 Aligned_cols=188 Identities=18% Similarity=0.157 Sum_probs=147.6
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+...+++++||++++|+ +++|+||||||||||+++|+|+. |++|.|.++|.++. ++.+||+||
T Consensus 22 l~~v~~~~~~~~~l~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ 98 (377)
T PRK11607 22 IRNLTKSFDGQHAVDDVSLTIYKGE---IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQ 98 (377)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 4667777777789999999999999 99999999999999999999999 99999999998753 467999999
Q ss_pred CCCCCccchHHHHHHhhhccccccccccc---cccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+|+++|+.+|+.+............. ....+.++. ....+ ..|||.|++++ ..+|.++++
T Consensus 99 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL-----~~~P~lLLL 173 (377)
T PRK11607 99 SYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSL-----AKRPKLLLL 173 (377)
T ss_pred CCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 99999999999999976432111100000 001111111 11112 24999999999 999999999
Q ss_pred eeeecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~rrIl---rdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|||+++||+.....+. +++.+ .|.|+ .+.+..+||++++|++|++...|...++
T Consensus 174 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~ 237 (377)
T PRK11607 174 DEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237 (377)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHH
Confidence 9999999999765543 55544 48887 6778899999999999999999988876
No 39
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.6e-26 Score=217.60 Aligned_cols=187 Identities=19% Similarity=0.149 Sum_probs=143.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vf 112 (465)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|+|
T Consensus 3 ~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGE---IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred EEEEEEEECCEEeeeceeEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 4678888888889999999999999 99999999999999999999999 99999999998653 24689999
Q ss_pred CCCCCCccchHHHHHHhhhccccccc---cccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
|++.+++..|+.+|+.+......... ...-....+..+. ....+ ..||+.|++++ ..+|.+++
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al-----~~~p~lll 154 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSL-----VHRPEVLF 154 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 99999888999999976432111000 0000000111111 11112 24999999999 89999999
Q ss_pred eeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcce
Q 012357 181 RVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (465)
Q Consensus 181 lDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aD 234 (465)
+||||+++|+..... +++++.++ |.|+ .+.+..+||+++++++|++...++..+
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 999999999987554 44565555 8777 678889999999999999988766543
No 40
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=2.6e-27 Score=221.33 Aligned_cols=190 Identities=17% Similarity=0.193 Sum_probs=152.1
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------ccccc
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIID 109 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig 109 (465)
..+++.++|+.+.++++|||.+++|| ++|+.|||||||||.+.++.|++ |++|.|.+||.+++ +..+|
T Consensus 6 ~a~~l~K~y~kr~Vv~~Vsl~v~~GE---iVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 6 VAENLAKSYKKRKVVNDVSLEVNSGE---IVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EehhhhHhhCCeeeeeeeeEEEcCCc---EEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 45678888899999999999999999 99999999999999999999999 99999999999876 34589
Q ss_pred cccCCCCCCccchHHHHHHhhhcccccccc--c---------cccccccccCcccccc---ccchhhhhHhHHhhhhccC
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVP--I---------YDFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p--~---------~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
|.+|++..|..+||++||.....-...... . .++............+ ...|+=||+++ +.+
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaL-----a~~ 157 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARAL-----AAN 157 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHH-----hcC
Confidence 999999999999999999875432211100 0 0111111111111122 34899999999 999
Q ss_pred cceeeeeeeecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 176 PLIDLRVSVTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 176 p~LdllDEpts~LD~~l---~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
|.+.++|||.+|+||.. ++++++.++++|..+ ....-.+|||.+++++|++..+|++.+++
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHh
Confidence 99999999999999985 667788888888776 44566799999999999999999999885
No 41
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.4e-26 Score=217.61 Aligned_cols=183 Identities=20% Similarity=0.199 Sum_probs=140.1
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+||
T Consensus 3 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGE---FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred eeeeEEEeCCeeeecceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 4678888888889999999999999 99999999999999999999999 89999999998753 346899999
Q ss_pred CCCCCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+++..|+.+|+.+........... .-....+..+. ....+ ..||+.|++++ ..+|.++++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al-----~~~p~~lll 154 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARAL-----AREPSLLLL 154 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 999888899999997642211000000 00000111111 01112 24999999999 889999999
Q ss_pred eeeecCccHHHHHHH---HHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 182 VSVTGGVHFDLVKRV---FRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 182 DEpts~LD~~l~rrI---lrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
||||+++|+....++ ++++.+ .|.|+ .+.+..+||+++.+++|++.+.|
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 155 DEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999875554 455554 38887 67788999999999999987654
No 42
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.94 E-value=3.5e-26 Score=230.44 Aligned_cols=182 Identities=14% Similarity=0.120 Sum_probs=141.9
Q ss_pred eeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------ccccccccCCCCCC
Q 012357 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLT 118 (465)
Q Consensus 46 ~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vfQ~p~l~ 118 (465)
.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|+||++.++
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge---~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGE---VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCCeeEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCC
Confidence 4567789999999999999 99999999999999999999999 99999999998753 34689999999999
Q ss_pred ccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeeeeec
Q 012357 119 DYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (465)
Q Consensus 119 ~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts 186 (465)
+..|+.+|+.+........... .-....+..+. ....+ ..||+.||+++ ..+|.++++||||+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al-----~~~p~lllLDEPt~ 153 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASL-----IHQPDVLFLDEPTT 153 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCCc
Confidence 9999999998743211100000 00001111111 11112 24999999999 89999999999999
Q ss_pred CccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 187 GVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 187 ~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+||+...+ +++++++++|.|+ ++.+.++||++++|++|+++..++..++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l 211 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99998654 4556666678888 7889999999999999999988877665
No 43
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.94 E-value=3.7e-26 Score=238.52 Aligned_cols=189 Identities=16% Similarity=0.199 Sum_probs=149.8
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~v 111 (465)
.+++++.|+.+.+|+++||++++|+ ++||+||||||||||+|+|+|++ |++|.|.++|.+.. ++.++++
T Consensus 6 ~~nls~~y~~~~vL~~vs~~i~~Ge---iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v 82 (402)
T PRK09536 6 VSDLSVEFGDTTVLDGVDLSVREGS---LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82 (402)
T ss_pred EeeEEEEECCEEEEEeeEEEECCCC---EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence 4678889988999999999999999 99999999999999999999999 99999999998754 3568999
Q ss_pred cCCCCCCccchHHHHHHhhhccc--ccc-ccccc----cccccccCcc------cccc---ccchhhhhHhHHhhhhccC
Q 012357 112 FDDPRLTDYDTLLENIRGLKEGK--AVQ-VPIYD----FKSSSRIGYR------TLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l~~~~--~~~-~p~~d----~~~~~~~~~~------~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
+|++.+++.+++.+|+.+.+... ... ....+ ....+.++.. ...+ ..||+.|++++ ..+
T Consensus 83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL-----~~~ 157 (402)
T PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARAL-----AQA 157 (402)
T ss_pred ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-----HcC
Confidence 99999988899999998753211 000 00000 0011111111 1112 24999999999 899
Q ss_pred cceeeeeeeecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 176 PLIDLRVSVTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 176 p~LdllDEpts~LD~~l---~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
|.++++||||++||+.. +++++++++++|.|+ ++.+.++||++++|++|+++..|...+++
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999985 455667777678888 78899999999999999999999887764
No 44
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.94 E-value=3.6e-26 Score=219.16 Aligned_cols=188 Identities=15% Similarity=0.169 Sum_probs=144.2
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.|+..++++++||++.+|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 3 VENLNAGYGKSQILFGVSLTVPEGE---IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred EeeEEeecCCeeEeeeeeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 4678888888889999999999999 99999999999999999999999 89999999998653 245899
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccccccc-ccccccc-------Ccccccc---ccchhhhhHhHHhhhhccCccee
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD-FKSSSRI-------GYRTLEV---PSSRIVIIEGIYALSEKLRPLID 179 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d-~~~~~~~-------~~~~~~l---~~qRVlIaegl~aL~d~~~p~Ld 179 (465)
+||++.+++..|+.+|+.+............. ....+.. ......+ ..||+.|++++ ..+|.++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p~ll 154 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARAL-----MSRPKLL 154 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHH-----hcCCCEE
Confidence 99999999989999999875321100000000 0000111 1011112 24999999999 8899999
Q ss_pred eeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 180 LRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 180 llDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
++||||+++|+.....+ ++++.++|.|+ .+.+..+||++++|++|++...++..++
T Consensus 155 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 155 LLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999875544 45555568787 6778899999999999999887765544
No 45
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.5e-26 Score=236.71 Aligned_cols=188 Identities=11% Similarity=0.089 Sum_probs=147.6
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+...+++++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+||
T Consensus 6 i~~l~~~~~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 6 LRNVTKAYGDVVISKDINLDIHEGE---FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEeCCeEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 4678888888889999999999999 99999999999999999999999 99999999998753 356999999
Q ss_pred CCCCCccchHHHHHHhhhcccccccccc---ccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPIY---DFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~~---d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+++.+|+.+|+.+............ -....+..+. ....+ ..|||.||+++ ..+|.++++
T Consensus 83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL-----~~~P~lLLL 157 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTL-----VAEPSVFLL 157 (369)
T ss_pred CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 9999999999999987532111100000 0001111111 11112 24999999999 899999999
Q ss_pred eeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|||+++||+....++ ++++.++ |.|+ .+.+..+||++++|++|++...++..++
T Consensus 158 DEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999875544 4666554 8887 6778899999999999999998887776
No 46
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.94 E-value=3.4e-26 Score=233.60 Aligned_cols=205 Identities=18% Similarity=0.181 Sum_probs=148.9
Q ss_pred eeeeeccCcceeeceeeeeeeEe-eeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECC
Q 012357 23 VQLVKKKDSDRYEIVPIEDTLSF-EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (465)
Q Consensus 23 ~~l~~~~~~k~y~~~~v~~~ls~-~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg 100 (465)
++|..++.++.|.... -..+.+ .-+...++++|||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|
T Consensus 7 ~~l~v~~l~~~~~~~~-~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G 82 (331)
T PRK15079 7 VLLEVADLKVHFDIKD-GKQWFWQPPKTLKAVDGVTLRLYEGE---TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLG 82 (331)
T ss_pred ceEEEeCeEEEECCCC-ccccccccCCceEEEeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECC
Confidence 4566666666663210 000000 1123679999999999999 99999999999999999999999 9999999999
Q ss_pred eecC----------ccccccccCCC--CCCccchHHHHHHhhhccc--cccccc---cccccccccCc-------ccccc
Q 012357 101 YNDS----------SRIIDGNFDDP--RLTDYDTLLENIRGLKEGK--AVQVPI---YDFKSSSRIGY-------RTLEV 156 (465)
Q Consensus 101 ~~~~----------~~~ig~vfQ~p--~l~~~~tv~enL~~l~~~~--~~~~p~---~d~~~~~~~~~-------~~~~l 156 (465)
.++. ++.++|+||+| .+++..|+.+|+.+..... ...... .-....+.++. ....+
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccC
Confidence 8753 24699999998 5778899999997643211 011000 00011111111 11112
Q ss_pred ---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccC
Q 012357 157 ---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYK 223 (465)
Q Consensus 157 ---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~ 223 (465)
..|||.||+++ ..+|.++++||||++||+.....+ +++++++ |.|+ +..+.++||++++|++
T Consensus 163 SgG~~QRv~iArAL-----~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 163 SGGQCQRIGIARAL-----ILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CHHHHHHHHHHHHH-----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 23999999999 999999999999999999875554 5666654 8888 7889999999999999
Q ss_pred cEEEecCCcceEE
Q 012357 224 AFIEPDLQTAHIK 236 (465)
Q Consensus 224 G~I~~~g~~aDIi 236 (465)
|++++.|+..++.
T Consensus 238 G~ive~g~~~~i~ 250 (331)
T PRK15079 238 GHAVELGTYDEVY 250 (331)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999988773
No 47
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.1e-26 Score=220.69 Aligned_cols=188 Identities=18% Similarity=0.183 Sum_probs=145.2
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|++|
T Consensus 5 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 5 VRNVSKRFGDFVALDDVSLDIPSGE---LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEeEEEEECCEEeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 4678888888889999999999999 99999999999999999999999 89999999998753 346899999
Q ss_pred CCCCCccchHHHHHHhhhccccc----cccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcc
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAV----QVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPL 177 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~----~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~ 177 (465)
++.+++..|+.+|+.+....... .... .-....+..+. ....+ ..||+.|++++ ..+|.
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al-----~~~p~ 156 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL-----AVEPK 156 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH-----hcCCC
Confidence 99998889999999864321100 0000 00000111111 11112 24999999999 88999
Q ss_pred eeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 178 IDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 178 LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
++++||||+++|+..... ++++++++ |.|+ .+.+..+||++++|.+|++...++..++
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 999999999999987554 45666554 8887 6778889999999999999988877665
No 48
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=7.9e-27 Score=223.84 Aligned_cols=189 Identities=17% Similarity=0.158 Sum_probs=155.6
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---ccccccccCCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDGNFDDP 115 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---~~~ig~vfQ~p 115 (465)
.++++.+||.+.|++|+||.+++|+ ++|++|+|||||||++|+|.|++ |++|.|+++|.++. ..+|||.|.+.
T Consensus 5 ie~vtK~Fg~k~av~~isf~v~~G~---i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 5 IEGVTKSFGDKKAVDNISFEVPPGE---IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred EecchhccCceeeecceeeeecCCe---EEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 4678899999999999999999999 99999999999999999999999 99999999999876 45799999999
Q ss_pred CCCccchHHHHHHhhhcccccccccccc---cccccc---C---cccccc---ccchhhhhHhHHhhhhccCcceeeeee
Q 012357 116 RLTDYDTLLENIRGLKEGKAVQVPIYDF---KSSSRI---G---YRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVS 183 (465)
Q Consensus 116 ~l~~~~tv~enL~~l~~~~~~~~p~~d~---~~~~~~---~---~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDE 183 (465)
.+++.+|+.+.+.++..-+.+....... ...++. + .+...+ ..|++-++-++ .+.|.+.++||
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisav-----iHePeLlILDE 156 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAV-----IHEPELLILDE 156 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHH-----hcCCCEEEecC
Confidence 9999999999999975422211110000 000111 1 111122 24889888999 89999999999
Q ss_pred eecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 184 VTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 184 pts~LD~~l---~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
|.|||||.. ++..+.+++++|.|| |+-++++||++..+.+|+.+-.|+..++.
T Consensus 157 PFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir 218 (300)
T COG4152 157 PFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIR 218 (300)
T ss_pred CccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHH
Confidence 999999974 667789999999999 89999999999999999999999998874
No 49
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.4e-26 Score=220.63 Aligned_cols=188 Identities=18% Similarity=0.259 Sum_probs=143.3
Q ss_pred eeeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------ccc
Q 012357 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (465)
Q Consensus 40 ~~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----------~~~ 107 (465)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.
T Consensus 3 ~~~l~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 3 VENLSKTYPNGKKALKDVSLSINPGE---FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred EeeEEEecCCccEEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4678888876 789999999999999 99999999999999999999999 89999999998653 235
Q ss_pred cccccCCCCCCccchHHHHHHhhhccc--------cc-cccccc--cccccccCc------ccccc---ccchhhhhHhH
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGK--------AV-QVPIYD--FKSSSRIGY------RTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~--------~~-~~p~~d--~~~~~~~~~------~~~~l---~~qRVlIaegl 167 (465)
++|+||++.+++..|+.+|+.+..... .. ...... ....+..+. ....+ ..||+.|++++
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 899999999888899999997632110 00 000000 000111111 11112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+..... +++++.++ |.|+ .+.+..+||++++|.+|+++..++..++
T Consensus 160 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 160 -----MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred -----hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 89999999999999999987554 45666544 8887 6778889999999999999887766553
No 50
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.93 E-value=8.2e-26 Score=227.70 Aligned_cols=187 Identities=16% Similarity=0.159 Sum_probs=146.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vf 112 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|+|
T Consensus 5 ~~~l~~~~~~~~~l~~is~~i~~Ge---i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 5 VSSLTKLYGTQNALDEVSFEAQKGR---IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEECCEEEEEEeEEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 5678888888899999999999999 99999999999999999999999 99999999998763 34699999
Q ss_pred CCCCCCccchHHHHHHhhhcccccc----ccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCccee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQ----VPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLID 179 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~----~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ld 179 (465)
|++.+++..|+.+|+.+........ ..... ...+..+. ....+ ..||+.|++++ ..+|.++
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al-----~~~p~ll 155 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVE-EMIELVGLRPEQHKKIGQLSKGYRQRVGLAQAL-----IHDPKVL 155 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHCCCchHhcCchhhCCHHHHHHHHHHHHH-----hcCCCEE
Confidence 9999999999999998643211100 00000 00111111 01112 24999999999 8999999
Q ss_pred eeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 180 LRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 180 llDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
++||||+++|+...+.+. +.++ ++.|+ ++.+.++||+++++++|++...|+..++.
T Consensus 156 iLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 156 ILDEPTTGLDPNQLVEIRNVIKNIG-KDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220 (301)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999998755544 5553 37777 78899999999999999999999888863
No 51
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.93 E-value=6e-26 Score=219.24 Aligned_cols=188 Identities=19% Similarity=0.200 Sum_probs=145.0
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGE---IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred EEEEEEEeCCEEeeccceeEecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 4678889988889999999999999 99999999999999999999999 89999999998642 235899
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccccccc---cccccccCc------ccccc---ccchhhhhHhHHhhhhccCcce
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLI 178 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~L 178 (465)
+||++.+++..|+.+|+.+............. ....+..+. ....+ ..||+.|++++ ...|.+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al-----~~~p~l 154 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARAL-----ATNPKF 154 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH-----hcCCCE
Confidence 99999999989999999864321111000000 000111111 11112 24999999999 899999
Q ss_pred eeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 179 DLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 179 dllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+++||||+++|+..... +++++.++|.|+ .+.+..+||++++|++|++...++..++
T Consensus 155 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 155 LLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 99999999999987554 456666668887 6688999999999999999877766554
No 52
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=8.9e-26 Score=216.71 Aligned_cols=184 Identities=16% Similarity=0.166 Sum_probs=140.4
Q ss_pred eeeeEeeeCc----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--cccccccc
Q 012357 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~g~----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--~~~ig~vf 112 (465)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+|
T Consensus 3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDISLSVEEGE---FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred EEEEEEEcCCCCcceEEEeceeEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 4678888876 789999999999999 99999999999999999999999 99999999998764 45799999
Q ss_pred CCCCCCccchHHHHHHhhhcccccccc---ccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
|++.+++..|+.+|+.+.......... ..-....+..+. ....+ ..||+.|++++ ..+|.+++
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al-----~~~p~lll 154 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARAL-----AVDPDVLL 154 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHH-----HcCCCEEE
Confidence 999988889999999764321110000 000001111111 11112 24999999999 88999999
Q ss_pred eeeeecCccHHHHHHH---HHHHHH-cCCCH------HHHHHHHhceEEEcc--CcEEEecCC
Q 012357 181 RVSVTGGVHFDLVKRV---FRDIQR-VGQEP------EEIIHQISETVYPMY--KAFIEPDLQ 231 (465)
Q Consensus 181 lDEpts~LD~~l~rrI---lrdl~e-~G~TI------~~vi~~i~d~V~~m~--~G~I~~~g~ 231 (465)
+||||+++|+.....+ ++++.+ .|.|+ .+.+..+||++++|+ +|++.+.++
T Consensus 155 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 217 (220)
T cd03293 155 LDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVE 217 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEE
Confidence 9999999999875544 455544 47787 667889999999999 799987654
No 53
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.93 E-value=2.5e-26 Score=219.30 Aligned_cols=175 Identities=37% Similarity=0.674 Sum_probs=161.7
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcCC--CeeEEEECCeecCc------cccccccCCCCCCccchHHHHHHhhhcccc
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKA 135 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gllP--~sG~I~lDg~~~~~------~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~ 135 (465)
+++++|||+|+|||||||+++.|...++ ..+.|+.|+|+... ....+.|++|.++++..+.++|..++.++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 4568999999999999999999999994 67899999998642 245679999999999999999999999999
Q ss_pred ccccccccccccccCccccccccchhhhhHhHHhhhh-ccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHHHHHH
Q 012357 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (465)
Q Consensus 136 ~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d-~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~vi~~i 214 (465)
+..|.|++..+.+.. +.....+++|+|+||+++|.| .+++.+|++++++++.|.+.+|++.||+.++|+++..++.+|
T Consensus 86 v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy 164 (218)
T COG0572 86 VDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQY 164 (218)
T ss_pred ccccccchhcccccC-CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999998876 566788899999999999997 899999999999999999999999999999999999999999
Q ss_pred hceEEEccCcEEEecCCcceEEeeC
Q 012357 215 SETVYPMYKAFIEPDLQTAHIKIIN 239 (465)
Q Consensus 215 ~d~V~~m~~G~I~~~g~~aDIiI~~ 239 (465)
-..|.||++.+|+|++..||++++.
T Consensus 165 ~~~vkp~~~~fIeptk~~ADiiip~ 189 (218)
T COG0572 165 VKTVRPMYEQFIEPTKKYADIIIPS 189 (218)
T ss_pred HHhhChhhhhccCcccccceEEeec
Confidence 9999999999999999999999964
No 54
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1e-25 Score=214.63 Aligned_cols=182 Identities=16% Similarity=0.202 Sum_probs=140.1
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---ccccccccCCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDGNFDDP 115 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---~~~ig~vfQ~p 115 (465)
.+++++.|+...+++++||++.+|+ +++|+|+||||||||+++|+|++ |++|.|.++|.++. ++.++|+||++
T Consensus 3 ~~~l~~~~~~~~~l~~v~~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 3 VENVTKRFGRVTALDDISFSVEKGE---IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 4678888888889999999999999 99999999999999999999999 89999999998753 45789999999
Q ss_pred CCCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeee
Q 012357 116 RLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVS 183 (465)
Q Consensus 116 ~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDE 183 (465)
.+++..|+.+|+.+........... .-....+..+. ....+ ..||+.|++++ ..+|.+.++||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al-----~~~p~~lllDE 154 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAV-----IHDPELLILDE 154 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHH-----hcCCCEEEEeC
Confidence 9998899999997643211100000 00000111111 11112 24999999999 88999999999
Q ss_pred eecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEec
Q 012357 184 VTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPD 229 (465)
Q Consensus 184 pts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~ 229 (465)
||+++|+...+.+ ++++.++|.|+ .+.+.++||++++|.+|++.+.
T Consensus 155 P~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 155 PFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 9999999875544 45555567777 6778889999999999998764
No 55
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.93 E-value=6.4e-26 Score=216.96 Aligned_cols=179 Identities=19% Similarity=0.245 Sum_probs=135.8
Q ss_pred eeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------cc
Q 012357 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SR 106 (465)
Q Consensus 40 ~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----------~~ 106 (465)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++
T Consensus 4 ~~~l~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNLNFHITKGE---MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred EEEEEEEecCCCeeEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 4678888853 579999999999999 99999999999999999999999 89999999998652 24
Q ss_pred ccccccCCCCCCccchHHHHHHhhhcccccc---ccccccccccccCc------ccccc---ccchhhhhHhHHhhhhcc
Q 012357 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKL 174 (465)
Q Consensus 107 ~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~---~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~ 174 (465)
.++|+||++.+++..|+.+|+.+........ ....-....+..+. ....+ ..||+.|++++ ..
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral-----~~ 155 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAI-----VH 155 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH-----hc
Confidence 6899999999998899999998643211000 00000000111111 11112 24999999999 89
Q ss_pred CcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 012357 175 RPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (465)
Q Consensus 175 ~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I 226 (465)
+|.++++||||+++|+.....+ +++++++|.|+ .+.+..+||++++|++|++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 156 KPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999876554 45555568887 6788899999999998864
No 56
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=9.7e-26 Score=217.69 Aligned_cols=188 Identities=16% Similarity=0.176 Sum_probs=144.6
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|+|.++|.+.. ++.++|
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 3 VSNLNVYYGQSHILRGVSLEVPKGE---VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred EEeEEEEeCCeEEecceeeEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 4678899988889999999999999 99999999999999999999999 89999999998753 245899
Q ss_pred ccCCCCCCccchHHHHHHhhhcccccccccccccccccc-------Ccccccc---ccchhhhhHhHHhhhhccCcceee
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRI-------GYRTLEV---PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~-------~~~~~~l---~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
+||++.+++..++.+|+.+.................+.. ......+ ..||+.|++++ ..+|.+.+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~p~ill 154 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARAL-----VTRPKLLL 154 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 999999998889999997643211100000000001111 0011112 24999999999 88999999
Q ss_pred eeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 181 RVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 181 lDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+||||+++|+..... +++++.++ |.|+ .+.+..+||+++++++|++...++..++
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 155 LDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999987554 44555554 7787 7778889999999999999888776554
No 57
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.93 E-value=1.4e-25 Score=213.37 Aligned_cols=182 Identities=20% Similarity=0.214 Sum_probs=140.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+..++++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.++. ++.++|+||
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 3 TNDLTKTYGKKRVLDDISLHVKKGE---IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred EEEEEEEECCeEeEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 4678888888899999999999999 99999999999999999999999 89999999998653 346899999
Q ss_pred CCCCCccchHHHHHHhhhccccccccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEp 184 (465)
++.+++..|+.+|+.............. ....+..+. ....+ ..||+.|++++ ..+|.++++|||
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~p~llllDEP 153 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRI-DEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALAL-----LGNPDLLILDEP 153 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHH-HHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHH-----hcCCCEEEECCC
Confidence 9999989999999977532111000000 000111111 01112 24999999999 889999999999
Q ss_pred ecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 185 TGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 185 ts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
|+++|+.....+ ++++.++|.|+ .+.+..+||+++.+++|++...|
T Consensus 154 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 154 TNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999876554 45555568777 67788999999999999987643
No 58
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.93 E-value=1.1e-25 Score=219.91 Aligned_cols=188 Identities=18% Similarity=0.201 Sum_probs=144.0
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++.
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 6 VKNLVKKFHGQTVLHGIDLEVKPGE---VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred EeceEEEECCeeeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 4678888887789999999999999 99999999999999999999999 89999999997642
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhc---cccc-cccccccccccccCc------ccccc---ccchhhhhHhHHhh
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE---GKAV-QVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYAL 170 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~---~~~~-~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL 170 (465)
++.++|+||++.+++..|+.+|+.+... +... .....-....+..+. ....+ ..||+.|++++
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al--- 159 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARAL--- 159 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHH---
Confidence 2358999999999988999999976321 1000 000000001111111 11112 24999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+..... +++++.++|.|+ .+.+..+||++++|++|++...++..++
T Consensus 160 --~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 160 --AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred --hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 89999999999999999986554 446666668887 6778899999999999999988877665
No 59
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=6.7e-26 Score=219.25 Aligned_cols=188 Identities=20% Similarity=0.232 Sum_probs=143.9
Q ss_pred eeeeEeeeCcE----EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 012357 40 EDTLSFEKGFF----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~----~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------- 104 (465)
.+++++.|+.. .+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++.
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGE---IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred EecceEEccCCCCceeeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 36778888665 89999999999999 99999999999999999999999 89999999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhh
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSE 172 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d 172 (465)
++.++|+||++.+++..|+.+|+.+........... .-....+..+. ....+ ..||+.|++++
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al----- 155 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARAL----- 155 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHH-----
Confidence 246899999999998899999997643211110000 00001111111 11112 24999999999
Q ss_pred ccCcceeeeeeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
...|.++++|||++++|+.... ++++++.++ |.|+ .+.+..+||+++.|++|+++..++..++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 8999999999999999998655 445666554 8887 6778899999999999999988876654
No 60
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=4.4e-26 Score=226.06 Aligned_cols=189 Identities=14% Similarity=0.136 Sum_probs=145.7
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------cc
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SR 106 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----------~~ 106 (465)
..+++++.|+...+++++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.+.. ++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGE---IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 35688889999999999999999999 99999999999999999999999 89999999998653 24
Q ss_pred ccccccCCCCCCccchHHHHHHhhhcccccccc---ccccccccccCc------ccccc---ccchhhhhHhHHhhhhcc
Q 012357 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKL 174 (465)
Q Consensus 107 ~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~ 174 (465)
.++|+||++.+++..|+.+|+.+.......... ..-....+..+. ....+ ..||+.||+++ ..
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral-----~~ 177 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL-----AV 177 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH-----hc
Confidence 689999999999889999999874321100000 000001111111 01112 24999999999 89
Q ss_pred CcceeeeeeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 175 RPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 175 ~p~LdllDEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+|.++++||||+++|+.....+ ++++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 178 ~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 178 DPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999875544 4566544 7887 6778899999999999999888876665
No 61
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.93 E-value=8.3e-26 Score=233.10 Aligned_cols=183 Identities=16% Similarity=0.095 Sum_probs=143.9
Q ss_pred eeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------ccccccccC
Q 012357 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFD 113 (465)
Q Consensus 46 ~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----------~~~ig~vfQ 113 (465)
.|+.+.+++++||++++|+ +++|+||||||||||+++|+|+. |++|.|.++|.++. ++.++|+||
T Consensus 2 ~~~~~~~l~~vs~~i~~Ge---i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGE---IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred ccCCceeEEeeEEEEcCCC---EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 4677889999999999999 99999999999999999999999 99999999998764 357999999
Q ss_pred CCCCCccchHHHHHHhhhccccccc---cccccccccccCcc------cccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGYR------TLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~~------~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+++..|+.+|+.+......... ...-....+.++.. ...+ ..|||.||+|+ ..+|.++++
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL-----~~~p~iLLl 153 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARAL-----AAEPDILLM 153 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 9999999999999987542111100 00000111111111 1112 24999999999 899999999
Q ss_pred eeeecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 182 VSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 182 DEpts~LD~~l~rrIl---rdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
|||++++|+...+.+. +++.++ |.|+ ++.+..+||++++|.+|+++..|...++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999766554 555544 8888 77788999999999999999999887763
No 62
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.93 E-value=1.1e-25 Score=215.75 Aligned_cols=186 Identities=14% Similarity=0.088 Sum_probs=142.2
Q ss_pred eeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccc
Q 012357 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~ 110 (465)
.+++++.|+. .++++++||++++|+ ++||+||||||||||+++|+|+. |++|.|.++|.+.. ++.++|
T Consensus 3 ~~~l~~~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 3 IRNLTKTYKKGTKPAVDDLSLNVYKGE---IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred EEeeEEEeCCCCceeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4678888876 789999999999999 99999999999999999999999 99999999998753 346899
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccc---cccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcce
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLI 178 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~L 178 (465)
+||++.+++..|+.+|+.+......... ...-....+..+. ....+ ..||+.|++++ ..+|.+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~p~l 154 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIAL-----IGGPSV 154 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHH-----hcCCCE
Confidence 9999999988999999986432111000 0000000111111 11112 24999999999 899999
Q ss_pred eeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcce
Q 012357 179 DLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (465)
Q Consensus 179 dllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aD 234 (465)
+++||||+++|+.....+. +++.+ +.|+ .+.+.++||+++.+++|++...++..+
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999766555 44443 5666 677889999999999999988876554
No 63
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.93 E-value=7.1e-26 Score=220.22 Aligned_cols=188 Identities=19% Similarity=0.233 Sum_probs=142.7
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------ccc
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----------~~~ 107 (465)
.+++++.|+ ...+++++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.
T Consensus 4 ~~~l~~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 4 VENLSKVYPNGKQALKNINLNINPGE---FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred EEeeeeecCCCcceeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 467888887 6789999999999999 99999999999999999999999 89999999998753 245
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccc--c-----cccccc----cccccccCc------ccccc---ccchhhhhHhH
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKA--V-----QVPIYD----FKSSSRIGY------RTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~--~-----~~p~~d----~~~~~~~~~------~~~~l---~~qRVlIaegl 167 (465)
++|+||++.+++..|+.+|+.+...... . ..+... ....+..+. ....+ ..||+.|++++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 8999999999988999999975321100 0 000000 000111111 11112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.... ++++++.++ |.|+ .+.+.++||++++|.+|++...+...++
T Consensus 161 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 161 -----AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred -----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 8999999999999999998654 445666544 7887 6778899999999999999887766553
No 64
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.93 E-value=1e-25 Score=213.99 Aligned_cols=178 Identities=15% Similarity=0.168 Sum_probs=134.7
Q ss_pred eeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----ccccccccCC
Q 012357 41 DTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDD 114 (465)
Q Consensus 41 ~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----~~~ig~vfQ~ 114 (465)
+++++.|+. ..+++++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+||+
T Consensus 3 ~~l~~~~~~~~~~l~~v~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 3 ENISFSYKKGTEILDDLSLDLYAGE---IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred ccEEEEeCCcCceeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 567888876 789999999999999 99999999999999999999999 99999999998753 3569999999
Q ss_pred CC-CCccchHHHHHHhhhccccccccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeeee
Q 012357 115 PR-LTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (465)
Q Consensus 115 p~-l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEp 184 (465)
+. .+...|+.+|+.+............ ....+..+. ....+ ..||+.|++++ ..+|.++++|||
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p~llllDEP 153 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQA-ETVLKDLDLYALKERHPLSLSGGQKQRLAIAAAL-----LSGKDLLIFDEP 153 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHH-HHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHH-----HhCCCEEEEeCC
Confidence 74 3345799999976432111000000 000111111 11112 24999999999 889999999999
Q ss_pred ecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEE
Q 012357 185 TGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIE 227 (465)
Q Consensus 185 ts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~ 227 (465)
|+++|+..... ++++++++|.|+ .+.+..+||++++|++|+++
T Consensus 154 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 154 TSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999986554 456665668887 67788899999999999863
No 65
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.3e-25 Score=229.00 Aligned_cols=179 Identities=15% Similarity=0.189 Sum_probs=137.7
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------ccccccccCCC--C
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDP--R 116 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----------~~~ig~vfQ~p--~ 116 (465)
..++++|||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.++|+||+| .
T Consensus 28 ~~~l~~vsl~i~~Ge---~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGK---TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 679999999999999 99999999999999999999999 89999999998753 24699999998 4
Q ss_pred CCccchHHHHHHhhhccc-cccccc---cccccccccCc-------ccccc---ccchhhhhHhHHhhhhccCcceeeee
Q 012357 117 LTDYDTLLENIRGLKEGK-AVQVPI---YDFKSSSRIGY-------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRV 182 (465)
Q Consensus 117 l~~~~tv~enL~~l~~~~-~~~~p~---~d~~~~~~~~~-------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllD 182 (465)
+++.+++.+++....... ...... .-....+.++. ....+ ..|||.||+|+ ..+|.++++|
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL-----~~~P~lLilD 179 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARAL-----MLDPDVVVAD 179 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHH-----HcCCCEEEEE
Confidence 677789998886532110 000000 00011111111 01112 23999999999 9999999999
Q ss_pred eeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 183 SVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 183 Epts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
|||++||+.....+ +++++++ |.|+ +..+.++||++++|++|++++.|+..+++
T Consensus 180 EPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 180 EPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999875544 5666554 8888 78889999999999999999999988773
No 66
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.93 E-value=2.3e-25 Score=212.52 Aligned_cols=183 Identities=16% Similarity=0.149 Sum_probs=140.6
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.++|+||
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 3 LENVTKRFGNVTALDDLNLDIADGE---FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred EEeeEEEECCeeeeeceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 4678889988889999999999999 99999999999999999999999 99999999998753 246899999
Q ss_pred CCCCCccchHHHHHHhhhccccccccccc---cccccccCcc------cccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGYR------TLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~~------~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+++..|+.+|+.+............. ....+..+.. ...+ ..||+.|++++ ..+|.+.++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral-----~~~p~llll 154 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAI-----VREPKVFLM 154 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 99988888999999764211100000000 0011111110 1112 24999999999 889999999
Q ss_pred eeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 182 VSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 182 DEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
||||+++|+...+.+ ++++.++ |.|+ .+.+..+||+++++++|+++..|
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 155 DEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999975554 4566554 8887 67788999999999999987654
No 67
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=1.4e-25 Score=218.19 Aligned_cols=188 Identities=17% Similarity=0.164 Sum_probs=145.1
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------ccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------~~~ig 109 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.++
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 4 FKNVSKHFGPTQVLHNIDLNIDQGE---VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEeEEEEECCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 4678888888889999999999999 99999999999999999999999 89999999998753 23589
Q ss_pred cccCCCCCCccchHHHHHHhhhcc-cccccc---ccccccccccCcc------cccc---ccchhhhhHhHHhhhhccCc
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEG-KAVQVP---IYDFKSSSRIGYR------TLEV---PSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~-~~~~~p---~~d~~~~~~~~~~------~~~l---~~qRVlIaegl~aL~d~~~p 176 (465)
|++|++.+++..|+.+|+.+.... ...... ..-....+..+.. ...+ ..||+.|++++ ..+|
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al-----~~~p 155 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL-----AVKP 155 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHH-----hcCC
Confidence 999999988889999999764211 000000 0000111111111 1112 24999999999 8899
Q ss_pred ceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 177 LIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
.++++||||+++|+..... +++++.++|.|+ .+.+..+||+++++++|++...++..++
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999986554 456666668887 6778899999999999999988877665
No 68
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.93 E-value=1.4e-25 Score=214.65 Aligned_cols=182 Identities=17% Similarity=0.212 Sum_probs=139.6
Q ss_pred eeeeEeeeCcE----EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccc
Q 012357 40 EDTLSFEKGFF----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g~~----~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~i 108 (465)
.+++++.|+.. ++++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.++. ++.+
T Consensus 4 ~~~v~~~~~~~~~~~~il~~~sl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 4 ADALTKRFRDVKKTVQAVDGVSFTVKPGE---VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred EEEEEEecCCCCccceeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 46788888765 79999999999999 99999999999999999999999 89999999998753 3568
Q ss_pred ccccCCCCCCccchHHHHHHhhhccccccc---cccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCc
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p 176 (465)
+|+||++.+++..|+.+|+.+......... ...-....+..+. ....+ ..||+.|++++ ..+|
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p 155 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARAL-----VHDP 155 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHH-----hcCC
Confidence 999999999988999999976432111000 0000001111111 11112 24999999999 8999
Q ss_pred ceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEec
Q 012357 177 LIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPD 229 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~ 229 (465)
.++++||||+++|+..... +++++.++|.|+ .+.+..+||+++.|.+|++...
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeec
Confidence 9999999999999987554 445665568887 6678899999999999998764
No 69
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=228.36 Aligned_cols=188 Identities=16% Similarity=0.217 Sum_probs=140.7
Q ss_pred eeeEeeeCc----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C----CeeEEEECCeecCc------
Q 012357 41 DTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDSS------ 105 (465)
Q Consensus 41 ~~ls~~~g~----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P----~sG~I~lDg~~~~~------ 105 (465)
+++++.|+. ..+|+||||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.++..
T Consensus 7 ~~l~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 7 DKLSVHFGDESAPFRAVDRISYSVKQGE---VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred eCeEEEECCCCccEEEEeeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 455666543 679999999999999 99999999999999999999998 4 78999999997531
Q ss_pred -----cccccccCCC--CCCccchHHHHHHhhhccc-cccc---cccccccccccCc---------ccccc---ccchhh
Q 012357 106 -----RIIDGNFDDP--RLTDYDTLLENIRGLKEGK-AVQV---PIYDFKSSSRIGY---------RTLEV---PSSRIV 162 (465)
Q Consensus 106 -----~~ig~vfQ~p--~l~~~~tv~enL~~l~~~~-~~~~---p~~d~~~~~~~~~---------~~~~l---~~qRVl 162 (465)
+.++|+||++ .+++..++.+++....... .... ...-....+.++. ....+ ..|||+
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~ 163 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVM 163 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH
Confidence 3589999998 4677788887776532110 0000 0000011111111 11112 239999
Q ss_pred hhHhHHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCc
Q 012357 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQT 232 (465)
Q Consensus 163 Iaegl~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~ 232 (465)
||+|+ ..+|.++++||||++||+.....+ ++++++ .|.|+ ++.+.++||+|++|++|+|++.|+.
T Consensus 164 iArAL-----~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~ 238 (326)
T PRK11022 164 IAMAI-----ACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKA 238 (326)
T ss_pred HHHHH-----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999 899999999999999999875554 566665 48888 7888999999999999999999998
Q ss_pred ceEE
Q 012357 233 AHIK 236 (465)
Q Consensus 233 aDIi 236 (465)
.+++
T Consensus 239 ~~~~ 242 (326)
T PRK11022 239 HDIF 242 (326)
T ss_pred HHHh
Confidence 8873
No 70
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.93 E-value=1.8e-25 Score=221.47 Aligned_cols=188 Identities=16% Similarity=0.215 Sum_probs=144.6
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------cccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----------~~~i 108 (465)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.++. ++.+
T Consensus 10 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i 86 (269)
T PRK11831 10 MRGVSFTRGNRCIFDNISLTVPRGK---ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRM 86 (269)
T ss_pred EeCeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcE
Confidence 4677888888889999999999999 99999999999999999999999 89999999998653 2458
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc-cccccc-cc--cccccccCcc------cccc---ccchhhhhHhHHhhhhccC
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGK-AVQVPI-YD--FKSSSRIGYR------TLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~-~~~~p~-~d--~~~~~~~~~~------~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
+|+||++.+++..|+.+|+.+..... ...... .. ....+..+.. ...+ ..||+.|++++ ...
T Consensus 87 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral-----~~~ 161 (269)
T PRK11831 87 SMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAI-----ALE 161 (269)
T ss_pred EEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH-----hcC
Confidence 99999999998889999997642110 000000 00 0001111111 1112 24999999999 889
Q ss_pred cceeeeeeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 176 PLIDLRVSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|.++++||||++||+.... ++++++.++ |.|+ .+.+.++||++++|++|++...++..++
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999998765 445666554 7787 6778899999999999999988877665
No 71
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.93 E-value=1.4e-25 Score=214.74 Aligned_cols=178 Identities=22% Similarity=0.249 Sum_probs=134.6
Q ss_pred eeeeEeeeCc----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 012357 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (465)
Q Consensus 40 ~~~ls~~~g~----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------- 104 (465)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++.
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGE---FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred EeeeEEEecCCCcceeEEeeeEEEEcCCC---EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 3678888875 789999999999999 99999999999999999999999 89999999998653
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhccccccc---cccccccccccCc------ccccc---ccchhhhhHhHHhhh
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~ 171 (465)
++.++|+||++.+++..|+.+|+.+......... ...-....+..+. ....+ ..||+.|++++
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al---- 155 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL---- 155 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHH----
Confidence 2468999999999988999999987432111000 0000001111111 11112 24999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHH---HHHHHHH-cCCCH------HHHHHHHhceEEEccCcEE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQR-VGQEP------EEIIHQISETVYPMYKAFI 226 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I 226 (465)
..+|.++++||||+++|+..... +++++.+ .|.|+ .+.+. +||++++|++|++
T Consensus 156 -~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 156 -ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred -ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 89999999999999999986554 4566655 48887 55566 9999999998863
No 72
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.93 E-value=2e-25 Score=227.82 Aligned_cols=180 Identities=14% Similarity=0.177 Sum_probs=137.9
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CC---eeEEEECCeecC-----------ccccccccC
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS-----------SRIIDGNFD 113 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~---sG~I~lDg~~~~-----------~~~ig~vfQ 113 (465)
...++++|||++.+|+ ++||+|+||||||||+++|+|++ |+ +|.|.++|.++. ++.++|+||
T Consensus 28 ~~~~l~~vsl~i~~Ge---~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q 104 (330)
T PRK09473 28 DVTAVNDLNFSLRAGE---TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQ 104 (330)
T ss_pred CEEEEeeeEEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEc
Confidence 4679999999999999 99999999999999999999999 75 999999999763 136999999
Q ss_pred CC--CCCccchHHHHHHhhhccc-ccccc---ccccccccccCc---------ccccc---ccchhhhhHhHHhhhhccC
Q 012357 114 DP--RLTDYDTLLENIRGLKEGK-AVQVP---IYDFKSSSRIGY---------RTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 114 ~p--~l~~~~tv~enL~~l~~~~-~~~~p---~~d~~~~~~~~~---------~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
++ .+++..++.+++....... ..... ..-....+.++. ....+ ..|||.||+++ ..+
T Consensus 105 ~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL-----~~~ 179 (330)
T PRK09473 105 DPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMAL-----LCR 179 (330)
T ss_pred CchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHH-----HcC
Confidence 98 5778889988886532110 00000 000001111111 11112 23999999999 899
Q ss_pred cceeeeeeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
|.++++||||++||+.....+ +++++++ |.|+ ...+.++||++++|++|+|++.|+..+++
T Consensus 180 P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 180 PKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999876654 4666654 8888 78888999999999999999999988874
No 73
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.7e-25 Score=217.65 Aligned_cols=188 Identities=16% Similarity=0.149 Sum_probs=145.1
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. |++|.|.++|.++. ++.++|
T Consensus 6 ~~~l~~~~~~~~~l~~~sl~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 6 AKNLAKAYKGRRVVEDVSLTVNSGE---IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred EeCcEEEeCCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 3678888887889999999999999 99999999999999999999999 89999999998753 246899
Q ss_pred ccCCCCCCccchHHHHHHhhhccc-cccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcc
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGK-AVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPL 177 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~-~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~ 177 (465)
+||++.+++..|+.+|+....... ...... .-....+..+. ....+ ..||+.|++++ ...|.
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p~ 157 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARAL-----AANPK 157 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHH-----hcCCC
Confidence 999999998899999997642110 000000 00000111111 01112 24999999999 88999
Q ss_pred eeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 178 IDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 178 LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
++++||||+++|+.... ++++++.++|.|+ .+.+..+||+++.+++|++...++..++
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999998654 4556666678887 6678899999999999999988876665
No 74
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.5e-25 Score=227.11 Aligned_cols=188 Identities=12% Similarity=0.216 Sum_probs=142.0
Q ss_pred eeeEeee----CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C----CeeEEEECCeecC-------
Q 012357 41 DTLSFEK----GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDS------- 104 (465)
Q Consensus 41 ~~ls~~~----g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P----~sG~I~lDg~~~~------- 104 (465)
+++++.| +...++++|||++.+|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.++.
T Consensus 7 ~~l~~~y~~~~~~~~~l~~vsl~i~~Ge---~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 7 RNLTIEFKTSDGWVKAVDRVSMTLTEGE---IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred eeeEEEEeCCCCCEEEEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 4566666 45789999999999999 99999999999999999999998 3 7899999998753
Q ss_pred ----ccccccccCCCC--CCccchHHHHHHhhhcccc-----c-c---ccccccccccccCcc---------cccc---c
Q 012357 105 ----SRIIDGNFDDPR--LTDYDTLLENIRGLKEGKA-----V-Q---VPIYDFKSSSRIGYR---------TLEV---P 157 (465)
Q Consensus 105 ----~~~ig~vfQ~p~--l~~~~tv~enL~~l~~~~~-----~-~---~p~~d~~~~~~~~~~---------~~~l---~ 157 (465)
++.++|+||++. +++..++.+++........ . . ....-....+.++.. ...+ .
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~ 163 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGE 163 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence 136899999986 5677899998875321100 0 0 000000111222211 1112 2
Q ss_pred cchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEE
Q 012357 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIE 227 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~ 227 (465)
.|||.||+|+ ..+|.++++||||++||+..... +++++.++ |.|+ ++.+.++||++++|++|+|+
T Consensus 164 ~QRv~iArAL-----~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 164 CQKVMIAIAL-----ANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238 (330)
T ss_pred HHHHHHHHHH-----HCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 3999999999 99999999999999999987554 45666654 8888 78899999999999999999
Q ss_pred ecCCcceEE
Q 012357 228 PDLQTAHIK 236 (465)
Q Consensus 228 ~~g~~aDIi 236 (465)
+.|+..++.
T Consensus 239 e~g~~~~i~ 247 (330)
T PRK15093 239 ETAPSKELV 247 (330)
T ss_pred EECCHHHHH
Confidence 999988773
No 75
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.7e-25 Score=222.44 Aligned_cols=187 Identities=10% Similarity=0.105 Sum_probs=142.2
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccccc
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~ 110 (465)
.+++++.|+ ...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 7 ~~~l~~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 7 VEDLHFRYKDGTKALKGLSLSIPEGS---KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred EEEEEEEeCCCCeeeeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 567888885 5679999999999999 99999999999999999999999 99999999998763 246899
Q ss_pred ccCCCC-CCccchHHHHHHhhhccccccc---cccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcc
Q 012357 111 NFDDPR-LTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPL 177 (465)
Q Consensus 111 vfQ~p~-l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~ 177 (465)
+||+|. .+...|+.+|+.+......... ...-....+..+. ....+ ..||+.|++++ ...|.
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL-----~~~p~ 158 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL-----AMDPD 158 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHH-----HcCCC
Confidence 999974 3455799999986432111000 0000001111111 11112 24999999999 99999
Q ss_pred eeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcce
Q 012357 178 IDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (465)
Q Consensus 178 LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aD 234 (465)
++++||||+++|+.... +++++++++|.|+ ++.+.++||++++|++|++.+.++..+
T Consensus 159 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 159 VIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999998655 4456666668888 677889999999999999999888754
No 76
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.1e-25 Score=222.14 Aligned_cols=188 Identities=14% Similarity=0.172 Sum_probs=142.1
Q ss_pred eeeeEeeeCc-----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~-----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+. ..+|++|||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|+++.
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGE---FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEECCCCCccccceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 4567777753 479999999999999 99999999999999999999999 99999999998753
Q ss_pred ccccccccCCCC-CCccchHHHHHHhhhcccccccc---ccccccccccCc--------ccccc---ccchhhhhHhHHh
Q 012357 105 SRIIDGNFDDPR-LTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY--------RTLEV---PSSRIVIIEGIYA 169 (465)
Q Consensus 105 ~~~ig~vfQ~p~-l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~--------~~~~l---~~qRVlIaegl~a 169 (465)
++.++|+||+|. .+...|+.+|+.+.......... ..-....+..+. ....+ ..||+.||+++
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL-- 159 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVV-- 159 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHH--
Confidence 246899999984 23357999999864321111000 000001111111 11112 24999999999
Q ss_pred hhhccCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 170 LSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 170 L~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
...|.++++||||++||+....+ ++++++++ |.|+ ++.+..+||++++|++|++...++..++
T Consensus 160 ---~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 160 ---AMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred ---HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 89999999999999999986554 45666654 8888 6778889999999999999999987776
No 77
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=2.6e-25 Score=216.26 Aligned_cols=187 Identities=16% Similarity=0.151 Sum_probs=143.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 5 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 5 LEGLSVSFDGFKALNDLSLYVDPGE---LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred EEeeEEEcCCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 4678888887889999999999999 99999999999999999999999 99999999998653 235899
Q ss_pred ccCCCCCCccchHHHHHHhhhcccc-c-------c---ccccccccccccCcc------cccc---ccchhhhhHhHHhh
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKA-V-------Q---VPIYDFKSSSRIGYR------TLEV---PSSRIVIIEGIYAL 170 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~-~-------~---~p~~d~~~~~~~~~~------~~~l---~~qRVlIaegl~aL 170 (465)
+||++.+++..|+.+|+.+...... . . ....-....+..+.. ...+ ..||+.|++++
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral--- 158 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL--- 158 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH---
Confidence 9999999999999999987432110 0 0 000000011111111 1112 24999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.....+ ++++.+ +.|+ .+.+..+||+++++++|++...++..++
T Consensus 159 --~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 159 --MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred --hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 889999999999999999975554 455544 6677 6778899999999999999988876665
No 78
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.93 E-value=3e-25 Score=218.24 Aligned_cols=189 Identities=19% Similarity=0.229 Sum_probs=145.4
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------------
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------------- 104 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------------- 104 (465)
-.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++.
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 7 NVIDLHKRYGEHEVLKGVSLQANAGD---VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred EEeeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 35778888888889999999999999 99999999999999999999999 89999999997642
Q ss_pred -------ccccccccCCCCCCccchHHHHHHhhhc---ccc-ccccccccccccccCcc-------cccc---ccchhhh
Q 012357 105 -------SRIIDGNFDDPRLTDYDTLLENIRGLKE---GKA-VQVPIYDFKSSSRIGYR-------TLEV---PSSRIVI 163 (465)
Q Consensus 105 -------~~~ig~vfQ~p~l~~~~tv~enL~~l~~---~~~-~~~p~~d~~~~~~~~~~-------~~~l---~~qRVlI 163 (465)
++.++|+||++.+++..++.+|+.+... +.. ......-....+..+.. ...+ ..||+.|
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~l 163 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 163 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 2468999999999988999999975321 100 00000000011111111 1112 2499999
Q ss_pred hHhHHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcce
Q 012357 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (465)
Q Consensus 164 aegl~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aD 234 (465)
++++ ..+|.++++||||+++|+..... +++.+.+.|.|+ .+.+..+||+++++++|+++..++..+
T Consensus 164 aral-----~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (257)
T PRK10619 164 ARAL-----AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQ 238 (257)
T ss_pred HHHH-----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999 88999999999999999987554 445666668887 777889999999999999998887766
Q ss_pred E
Q 012357 235 I 235 (465)
Q Consensus 235 I 235 (465)
+
T Consensus 239 ~ 239 (257)
T PRK10619 239 L 239 (257)
T ss_pred h
Confidence 5
No 79
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.7e-25 Score=217.08 Aligned_cols=188 Identities=13% Similarity=0.066 Sum_probs=145.0
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|+. |++|.|.++|.+.. ++.++|
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (237)
T PRK11614 8 FDKVSAHYGKIQALHEVSLHINQGE---IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI 84 (237)
T ss_pred EEeEEEeeCCceeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEE
Confidence 4678888877889999999999999 99999999999999999999999 89999999998753 245899
Q ss_pred ccCCCCCCccchHHHHHHhhhccccc-ccccccccccccc-------Ccccccc---ccchhhhhHhHHhhhhccCccee
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAV-QVPIYDFKSSSRI-------GYRTLEV---PSSRIVIIEGIYALSEKLRPLID 179 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~-~~p~~d~~~~~~~-------~~~~~~l---~~qRVlIaegl~aL~d~~~p~Ld 179 (465)
++|++.+++..|+.+|+......... .....-....+.. ......+ ..||+.|++++ ..+|.++
T Consensus 85 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al-----~~~p~il 159 (237)
T PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRAL-----MSQPRLL 159 (237)
T ss_pred eccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHH-----HhCCCEE
Confidence 99999999888999999764211000 0000000000011 0011112 24999999999 8899999
Q ss_pred eeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 180 LRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 180 llDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
++||||+++|+..... +++++.++|.|+ .+.+.++||+++++++|++...++..++
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999987554 456666678887 6778899999999999999998887776
No 80
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.7e-25 Score=222.88 Aligned_cols=188 Identities=14% Similarity=0.155 Sum_probs=142.6
Q ss_pred eeeeEeeeCc-----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~-----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+. ..+|++|||++++|+ +++|+|+||||||||+++|+|++ |++|.|.+||+++.
T Consensus 5 ~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 5 FQKVEHRYQYKTPFERRALYDVNVSIPSGS---YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEECCCCcccccceeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4677888753 569999999999999 99999999999999999999999 99999999998752
Q ss_pred --ccccccccCCCC--CCccchHHHHHHhhhcccccccc---ccccccccccCc-------ccccc---ccchhhhhHhH
Q 012357 105 --SRIIDGNFDDPR--LTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY-------RTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 --~~~ig~vfQ~p~--l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~-------~~~~l---~~qRVlIaegl 167 (465)
++.++|+||+|. ++ ..|+.+|+.+.......... ..-....+.++. ....+ ..||+.||+++
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 246899999973 44 46999999864321110000 000000111111 11112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||++||+..... ++++++++ |.|+ ++.+.++||++++|++|+++..++..++.
T Consensus 161 -----~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 161 -----AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred -----HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 89999999999999999987554 45666554 8888 77888999999999999999999877763
No 81
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.5e-25 Score=215.61 Aligned_cols=188 Identities=16% Similarity=0.181 Sum_probs=143.4
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------------c
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------S 105 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------------~ 105 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|+. |++|.|.++|.++. +
T Consensus 5 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 5 LNGINCFYGAHQALFDITLDCPQGE---TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEeeEEEECCeeeEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 4678888888889999999999999 99999999999999999999999 89999999998641 2
Q ss_pred cccccccCCCCCCccchHHHHHHhhh-c--cccc-cccccccccccccCc------ccccc---ccchhhhhHhHHhhhh
Q 012357 106 RIIDGNFDDPRLTDYDTLLENIRGLK-E--GKAV-QVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSE 172 (465)
Q Consensus 106 ~~ig~vfQ~p~l~~~~tv~enL~~l~-~--~~~~-~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d 172 (465)
+.++|+||++.+++..|+.+|+.... . +... ..........+..+. ....+ ..||+.|++++
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral----- 156 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARAL----- 156 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH-----
Confidence 46899999999998899999996421 1 1000 000000000111111 11112 24999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.....+ ++++.++|.|+ .+.+..+||++++|.+|++...++..++
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 889999999999999999875544 45665568887 6778889999999999999988776654
No 82
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.7e-25 Score=215.57 Aligned_cols=188 Identities=17% Similarity=0.138 Sum_probs=143.7
Q ss_pred eeeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccccc
Q 012357 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~ 110 (465)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 3 ~~~l~~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 3 FENVTKRYGGGKKAVNNLNLEIAKGE---FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred EEEEEEEeCCcceEeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4678888887 789999999999999 99999999999999999999999 89999999998753 246899
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccccc---cccccccccCcc--------cccc---ccchhhhhHhHHhhhhccCc
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGYR--------TLEV---PSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~~--------~~~l---~~qRVlIaegl~aL~d~~~p 176 (465)
+||++.+++..|+.+|+.+........... .-....+..+.. ...+ ..||+.|++++ ..+|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral-----~~~p 154 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL-----AADP 154 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHH-----hcCC
Confidence 999999998899999997643211000000 000001111111 1112 24999999999 8899
Q ss_pred ceeeeeeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 177 LIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
.++++||||+++|+.....+ ++++.++ |.|+ .+.+..+||+++++++|++...++..++
T Consensus 155 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999875544 4555554 8887 6678899999999999999887766554
No 83
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.1e-25 Score=203.35 Aligned_cols=155 Identities=21% Similarity=0.299 Sum_probs=132.1
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vf 112 (465)
.+++++.|+...+++++||++.+|+ +++|+|+||||||||+++|+|+. |++|.|.++|.+.. ++.++|+|
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 3 VRNLSKRYGKKTALDDISLTVEKGE---IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred EEEEEEEECCeeeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 3677888877789999999999999 99999999999999999999999 89999999998653 34689999
Q ss_pred CCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHH
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l 192 (465)
|++.+++..++.+|+. .++ ...||+.|++++ ..+|.++++||||+++|+..
T Consensus 80 q~~~~~~~~tv~~~~~-------------------LS~-----G~~qrv~laral-----~~~p~illlDEPt~~LD~~~ 130 (173)
T cd03230 80 EEPSLYENLTVRENLK-------------------LSG-----GMKQRLALAQAL-----LHDPELLILDEPTSGLDPES 130 (173)
T ss_pred cCCccccCCcHHHHhh-------------------cCH-----HHHHHHHHHHHH-----HcCCCEEEEeCCccCCCHHH
Confidence 9999988889999985 112 123899999999 89999999999999999987
Q ss_pred HHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 012357 193 VKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (465)
Q Consensus 193 ~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I 226 (465)
..+ +++++.++|.|+ .+.+..+||++++|++|++
T Consensus 131 ~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 131 RREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 554 446666667776 6778889999999998853
No 84
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.92 E-value=4.9e-25 Score=212.41 Aligned_cols=185 Identities=12% Similarity=0.122 Sum_probs=140.1
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------P~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |.+|.|.++|.++.
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 3 LRDLNVYYGDKHALKDISLDIPKGE---ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred EEEEEEEcCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 4678888988889999999999999 99999999999999999999997 57999999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccccc----cccccccccccCc-----cc---ccc---ccchhhhhHhHHh
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV----PIYDFKSSSRIGY-----RT---LEV---PSSRIVIIEGIYA 169 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~----p~~d~~~~~~~~~-----~~---~~l---~~qRVlIaegl~a 169 (465)
++.++|+||++.++ ..|+.+|+.+......... ...-....+..+. .. ..+ ..||+.|++++
T Consensus 80 ~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al-- 156 (227)
T cd03260 80 RRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARAL-- 156 (227)
T ss_pred HhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHH--
Confidence 24589999999888 7899999976432110000 0000000111111 00 112 24999999999
Q ss_pred hhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcce
Q 012357 170 LSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (465)
Q Consensus 170 L~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aD 234 (465)
..+|.++++||||+++|+.....+ +++++++ .|+ .+.+..+||+++++.+|++...++..+
T Consensus 157 ---~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 157 ---ANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred ---hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 889999999999999999875554 4555555 666 667888999999999999988876654
No 85
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.92 E-value=4.1e-25 Score=210.59 Aligned_cols=179 Identities=21% Similarity=0.276 Sum_probs=137.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------ccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------~~~ig 109 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 3 ~~~l~~~~~~~~~l~~~s~~i~~G~---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 3 IKNLHKSFGDFHVLKGIDLTVKKGE---VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred EEEEEEEECCeEeecCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 4678899988889999999999999 99999999999999999999999 89999999998752 24689
Q ss_pred cccCCCCCCccchHHHHHHhhhc---cccc-cccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCc
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKE---GKAV-QVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~---~~~~-~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p 176 (465)
|+||++.+++..++.+|+.+... +... .....-....+..+. ....+ ..||+.|++++ ..+|
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~p 154 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL-----AMNP 154 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH-----hcCC
Confidence 99999999988999999976421 1000 000000000111111 11112 24999999999 8899
Q ss_pred ceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 012357 177 LIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I 226 (465)
.++++||||+++|+.... ++++++.++|.|+ .+.+.++||++++|++|++
T Consensus 155 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 155 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999998654 4556666668887 6778899999999998863
No 86
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.4e-25 Score=221.90 Aligned_cols=188 Identities=15% Similarity=0.219 Sum_probs=142.6
Q ss_pred eeeeEeeeCc-----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~-----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+. ..++++|||++++|+ +++|+|+||||||||+++|+|++ |++|.|.+||.++.
T Consensus 4 ~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge---~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 4 FEKVNYTYQPNSPFASRALFDIDLEVKKGS---YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred EEEEEEEeCCCCcccccceeeeEEEEcCCC---EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 4677888853 259999999999999 99999999999999999999999 99999999998752
Q ss_pred --ccccccccCCC--CCCccchHHHHHHhhhccccccccccc---cccccccCc-------ccccc---ccchhhhhHhH
Q 012357 105 --SRIIDGNFDDP--RLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY-------RTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 --~~~ig~vfQ~p--~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~-------~~~~l---~~qRVlIaegl 167 (465)
++.++|+||+| .++. .|+.+|+.+............. ....+.++. ....+ ..||+.|++++
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 24689999998 4554 5999999875321111000000 000011111 11112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+...+.+ +++++++|.|+ ++.+..+||++++|.+|+++..|...++.
T Consensus 160 -----~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 232 (288)
T PRK13643 160 -----AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232 (288)
T ss_pred -----HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 899999999999999999875544 46666668888 77788999999999999999999888763
No 87
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.92 E-value=4.7e-25 Score=216.06 Aligned_cols=188 Identities=17% Similarity=0.195 Sum_probs=145.0
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++.
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 3 FSDVTKRFGILTVLDGLNFSVAAGE---KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred EEEEEEEeCCeeEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 4678899988889999999999999 99999999999999999999999 99999999998652
Q ss_pred ------ccccccccCCCCCCccchHHHHHHhhhc-cccccccc---cccccccccCc------ccccc---ccchhhhhH
Q 012357 105 ------SRIIDGNFDDPRLTDYDTLLENIRGLKE-GKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIE 165 (465)
Q Consensus 105 ------~~~ig~vfQ~p~l~~~~tv~enL~~l~~-~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIae 165 (465)
++.++|+||++.+++..|+.+|+.+... ........ .-....+.++. ....+ ..||+.|++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 3468999999999988999999976321 00000000 00001111111 01112 249999999
Q ss_pred hHHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 166 gl~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
++ ..+|.++++||||+++|+..... +++++.++ |.|+ .+.+..+||++++|++|+++..++..++
T Consensus 160 al-----~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 160 AL-----AMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred HH-----HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99 88999999999999999986554 45666554 8887 6778889999999999999988887766
No 88
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.92 E-value=3.7e-25 Score=211.25 Aligned_cols=178 Identities=21% Similarity=0.245 Sum_probs=134.9
Q ss_pred eeeeEeee-CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------ccc
Q 012357 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (465)
Q Consensus 40 ~~~ls~~~-g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----------~~~ 107 (465)
.+++++.| +...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.
T Consensus 4 ~~~l~~~~~~~~~il~~is~~i~~G~---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 4 FHNVSKAYPGGVAALHDVSLHIRKGE---FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEeeeEEeCCCceeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 46778888 46789999999999999 99999999999999999999999 89999999998753 246
Q ss_pred cccccCCCCCCccchHHHHHHhhhccccccc---cccccccccccCc------ccccc---ccchhhhhHhHHhhhhccC
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
++|+||++.+++..|+.+|+.+......... ...-....+..+. ....+ ..||+.|++++ ..+
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al-----~~~ 155 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAI-----VNS 155 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH-----hCC
Confidence 8999999999988999999976421100000 0000001111111 01112 24999999999 889
Q ss_pred cceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcE
Q 012357 176 PLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~ 225 (465)
|.++++||||+++|+..... +++++.++|.|+ .+.+..+||++++|++|+
T Consensus 156 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 156 PPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999987554 456665568887 678888999999998873
No 89
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.7e-25 Score=215.52 Aligned_cols=188 Identities=18% Similarity=0.238 Sum_probs=143.4
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.|+...+++++||++.+|+ +++|+|+||||||||+++|+|+. |++|.|.++|.++. +..++|
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (255)
T PRK11300 8 VSGLMMRFGGLLAVNNVNLEVREQE---IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84 (255)
T ss_pred EeeEEEEECCEEEEEeeeeEEcCCe---EEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEE
Confidence 5678888887889999999999999 99999999999999999999999 89999999998753 124788
Q ss_pred ccCCCCCCccchHHHHHHhhhccc-------cc-cccc----------cccccccccCcc------cccc---ccchhhh
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGK-------AV-QVPI----------YDFKSSSRIGYR------TLEV---PSSRIVI 163 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~-------~~-~~p~----------~d~~~~~~~~~~------~~~l---~~qRVlI 163 (465)
+||++.+++..|+.+|+.+..... .. ..+. .-....+..+.. ...+ ..||+.|
T Consensus 85 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 164 (255)
T PRK11300 85 TFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEI 164 (255)
T ss_pred eccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHH
Confidence 999999999899999998642110 00 0000 000001111111 1112 2399999
Q ss_pred hHhHHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcc
Q 012357 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (465)
Q Consensus 164 aegl~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~a 233 (465)
++++ ..+|.++++||||+++|+..... +++++.++ |.|+ .+.+..+||+++++.+|++...++..
T Consensus 165 a~al-----~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 165 ARCM-----VTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHH-----hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 9999 89999999999999999986554 45565554 8887 77888999999999999998877665
Q ss_pred eE
Q 012357 234 HI 235 (465)
Q Consensus 234 DI 235 (465)
++
T Consensus 240 ~~ 241 (255)
T PRK11300 240 EI 241 (255)
T ss_pred HH
Confidence 54
No 90
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=6.2e-25 Score=214.15 Aligned_cols=186 Identities=17% Similarity=0.154 Sum_probs=142.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~v 111 (465)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.++|+
T Consensus 6 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 6 FKEVSYSSFGKEILKDISVKFEGGA---IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred EEeEEEEeCCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 4678888887889999999999999 99999999999999999999999 99999999998753 3468999
Q ss_pred cCCCCCCccchHHHHHHhhhccccccccccccccccccCc-------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 112 FDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY-------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~-------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
||++.+++ .++.+|+.............. ....+..+. ....+ ..||+.|++++ ..+|.++++
T Consensus 83 ~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al-----~~~p~llll 155 (241)
T PRK14250 83 FQQPHLFE-GTVKDNIEYGPMLKGEKNVDV-EYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTL-----ANNPEVLLL 155 (241)
T ss_pred ecCchhch-hhHHHHHhcchhhcCcHHHHH-HHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 99998886 599999875321110000000 000011111 01112 24999999999 889999999
Q ss_pred eeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
||||+++|+..... +++++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 156 DEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999986554 44566554 8887 6778899999999999999988877766
No 91
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.92 E-value=7.1e-25 Score=216.37 Aligned_cols=185 Identities=16% Similarity=0.149 Sum_probs=141.2
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--ccccccccCCCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPR 116 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--~~~ig~vfQ~p~ 116 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|+||++.
T Consensus 15 i~~l~~~~~~~~il~~isl~i~~Ge---~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 91 (257)
T PRK11247 15 LNAVSKRYGERTVLNQLDLHIPAGQ---FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDAR 91 (257)
T ss_pred EEEEEEEECCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCcc
Confidence 5678888888889999999999999 99999999999999999999999 89999999997643 457999999999
Q ss_pred CCccchHHHHHHhhhcccc-cccc-cc-ccccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccH
Q 012357 117 LTDYDTLLENIRGLKEGKA-VQVP-IY-DFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (465)
Q Consensus 117 l~~~~tv~enL~~l~~~~~-~~~p-~~-d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~ 190 (465)
+++..|+.+|+.+...... .... .. .+............+ ..||+.|++++ ..+|.++++||||++||+
T Consensus 92 l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL-----~~~p~lllLDEPt~~LD~ 166 (257)
T PRK11247 92 LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARAL-----IHRPGLLLLDEPLGALDA 166 (257)
T ss_pred CCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCCCCCCH
Confidence 9988999999986421100 0000 00 000000001011112 24999999999 889999999999999999
Q ss_pred HHHHHH---HHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCc
Q 012357 191 DLVKRV---FRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQT 232 (465)
Q Consensus 191 ~l~rrI---lrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~ 232 (465)
.....+ ++++.+ .|.|+ .+.+..+||+++++++|.++.+++.
T Consensus 167 ~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 167 LTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccc
Confidence 876554 455543 47777 6778889999999999999876653
No 92
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.92 E-value=6.7e-25 Score=216.21 Aligned_cols=193 Identities=13% Similarity=0.127 Sum_probs=143.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~v 111 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|+
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 5 ARNLSVRLGGRTLLDDVSLTLRPGE---VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred EEeEEEEeCCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 4678888888889999999999999 99999999999999999999999 89999999998653 2458999
Q ss_pred cCCCCCCccchHHHHHHhhhccccccc---cccccccccccCc------ccccc---ccchhhhhHhHHhh-hhccCcce
Q 012357 112 FDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYAL-SEKLRPLI 178 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL-~d~~~p~L 178 (465)
||++.+++..|+.+|+.+......... ...-....+..+. ....+ ..||+.|++++..- .++.+|.+
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l 161 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 999988778899999976432110000 0000001111111 11112 24999999999210 00158999
Q ss_pred eeeeeeecCccHHHHH---HHHHHHH-HcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 179 DLRVSVTGGVHFDLVK---RVFRDIQ-RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 179 dllDEpts~LD~~l~r---rIlrdl~-e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+++||||+++|+.... ++++++. ++|.|+ .+.+..+||++++|.+|.+...++..++
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 162 LLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 9999999999998654 4556666 568887 6778899999999999999887766554
No 93
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.92 E-value=3.9e-25 Score=211.06 Aligned_cols=177 Identities=15% Similarity=0.199 Sum_probs=133.1
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--ccccccccCCCCC
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPRL 117 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--~~~ig~vfQ~p~l 117 (465)
+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+||++.+
T Consensus 3 ~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 3 EDLTVSYGGHPVLEDVSFEVKPGE---FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred ccceeEECCEEeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 578888887889999999999999 99999999999999999999999 99999999998653 4579999999876
Q ss_pred Cc--cchHHHHHHhhhcccc------cc-ccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCccee
Q 012357 118 TD--YDTLLENIRGLKEGKA------VQ-VPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLID 179 (465)
Q Consensus 118 ~~--~~tv~enL~~l~~~~~------~~-~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ld 179 (465)
+. ..|+.+|+.+...... .. ....-....+..+. ....+ ..||+.|++++ ..+|.++
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al-----~~~p~ll 154 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARAL-----VQDPDLL 154 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHH-----HcCCCEE
Confidence 32 3799999976432100 00 00000000111111 11112 24999999999 8899999
Q ss_pred eeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcE
Q 012357 180 LRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 180 llDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~ 225 (465)
++||||++||+.....+ ++++.++|.|+ .+.+.++||++++|++|.
T Consensus 155 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~ 209 (213)
T cd03235 155 LLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTV 209 (213)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcE
Confidence 99999999999876544 45555567777 677889999999998863
No 94
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.92 E-value=5.9e-25 Score=216.01 Aligned_cols=188 Identities=12% Similarity=0.144 Sum_probs=144.4
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~v 111 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.++|+
T Consensus 4 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 4 LSRVSWSAGGRLIVDGVDVTAPPGS---LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred EEeEEEEECCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 4678888988899999999999999 99999999999999999999999 89999999998753 2358999
Q ss_pred cCCCCCCccchHHHHHHhhhccc-c---ccccc---cccccccccCcc------cccc---ccchhhhhHhHHhhhhccC
Q 012357 112 FDDPRLTDYDTLLENIRGLKEGK-A---VQVPI---YDFKSSSRIGYR------TLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l~~~~-~---~~~p~---~d~~~~~~~~~~------~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
+|++.++...|+.+|+.+..... . ..... .-....+..+.. ...+ ..||+.|++++ ..+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al-----~~~ 155 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARAL-----AQE 155 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH-----hcC
Confidence 99998777889999997642100 0 00000 000011111111 1112 24999999999 889
Q ss_pred cceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 176 PLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|.+.++||||+++|+..... ++++++++|.|+ .+.+..+||++++|.+|++...++..++
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 156 PKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 99999999999999986554 456666668887 7888899999999999999988876655
No 95
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.2e-25 Score=231.37 Aligned_cols=204 Identities=14% Similarity=0.149 Sum_probs=153.1
Q ss_pred eeeeccCcceeecee-----------eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C
Q 012357 24 QLVKKKDSDRYEIVP-----------IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P 91 (465)
Q Consensus 24 ~l~~~~~~k~y~~~~-----------v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P 91 (465)
+|..++.+|.|...+ -..++...|+...+++++||++++|+ +++|+||||||||||+++|+|++ |
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Ge---i~~LvG~NGsGKSTLLr~I~Gl~~p 80 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGE---IFVIMGLSGSGKSTMVRLLNRLIEP 80 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCC
Confidence 566677777775432 12234555777789999999999999 99999999999999999999999 9
Q ss_pred CeeEEEECCeecC-----------ccccccccCCCCCCccchHHHHHHhhhcccccccc---ccccccccccCc------
Q 012357 92 SIAVITMDNYNDS-----------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY------ 151 (465)
Q Consensus 92 ~sG~I~lDg~~~~-----------~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~------ 151 (465)
++|.|.++|.++. ++.++|+||++.+++..|+.+|+.+.......... ..-....+.++.
T Consensus 81 ~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~ 160 (400)
T PRK10070 81 TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS 160 (400)
T ss_pred CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc
Confidence 9999999998753 13689999999999999999999875321100000 000001111111
Q ss_pred ccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHH-cCCCH------HHHHHHHhceE
Q 012357 152 RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQR-VGQEP------EEIIHQISETV 218 (465)
Q Consensus 152 ~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e-~G~TI------~~vi~~i~d~V 218 (465)
....+ ..|||.|++++ ..+|.++++|||+++||+.....+ ++++.+ .|.|+ .+.+..+||++
T Consensus 161 ~~~~LSgGq~QRv~LArAL-----~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri 235 (400)
T PRK10070 161 YPDELSGGMRQRVGLARAL-----AINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235 (400)
T ss_pred CcccCCHHHHHHHHHHHHH-----hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEE
Confidence 11112 24999999999 899999999999999999875554 455554 48887 67788999999
Q ss_pred EEccCcEEEecCCcceE
Q 012357 219 YPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 219 ~~m~~G~I~~~g~~aDI 235 (465)
++|++|++...++..++
T Consensus 236 ~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 236 AIMQNGEVVQVGTPDEI 252 (400)
T ss_pred EEEECCEEEecCCHHHH
Confidence 99999999988887766
No 96
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.92 E-value=9.9e-25 Score=209.85 Aligned_cols=183 Identities=19% Similarity=0.245 Sum_probs=136.9
Q ss_pred eeeeEeeeCcE----EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 012357 40 EDTLSFEKGFF----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~----~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------- 104 (465)
.+++++.|+.. .+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++.
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGE---TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred EEeeeEeccCCCcceeeecCceeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 46788888654 79999999999999 99999999999999999999999 99999999998653
Q ss_pred ccccccccCCC--CCCccchHHHHHHhhhccc--ccccccccc---ccccccCc-------ccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDP--RLTDYDTLLENIRGLKEGK--AVQVPIYDF---KSSSRIGY-------RTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p--~l~~~~tv~enL~~l~~~~--~~~~p~~d~---~~~~~~~~-------~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++ .+++..|+.+|+.+..... ......... ...+..+. ....+ ..||+.|++++
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 24689999998 4566789999997532111 000000000 01111111 11112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
..+|.++++||||+++|+..... +++++.++ |.|+ .+.+.++||+++++++|++...|
T Consensus 161 -----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 161 -----ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred -----hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 88999999999999999987554 44565554 8887 67788899999999999987543
No 97
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5e-25 Score=222.59 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=141.8
Q ss_pred eeeeEeeeCc-----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~-----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|++..
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge---~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 5 VKNIVKIFNKKLPTELKALDNVSVEINQGE---FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEECCCCCccccceeeeEEEEeCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 4677888853 269999999999999 99999999999999999999999 99999999876430
Q ss_pred ----------------------ccccccccCCCC-CCccchHHHHHHhhhcccccccc---ccccccccccCc-------
Q 012357 105 ----------------------SRIIDGNFDDPR-LTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY------- 151 (465)
Q Consensus 105 ----------------------~~~ig~vfQ~p~-l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~------- 151 (465)
++.+||+||+|. .+...|+.+|+.+.......... ..-....+.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 345899999873 33456999999875321111000 000001111111
Q ss_pred ccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEE
Q 012357 152 RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVY 219 (465)
Q Consensus 152 ~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~ 219 (465)
....+ ..||+.||+++ ..+|.++++||||+++|+..... ++++++++|.|+ ++.+.++||+++
T Consensus 162 ~~~~LSgGqkqrvalA~aL-----~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 162 SPFELSGGQKRRVALAGIL-----AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred ChhhCCHHHHHHHHHHHHH-----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 11112 24999999999 99999999999999999986554 456666668888 677889999999
Q ss_pred EccCcEEEecCCcceEE
Q 012357 220 PMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 220 ~m~~G~I~~~g~~aDIi 236 (465)
+|++|+++..+...++.
T Consensus 237 vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 237 FFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999887763
No 98
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.92 E-value=9.2e-25 Score=212.01 Aligned_cols=187 Identities=18% Similarity=0.192 Sum_probs=141.2
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vf 112 (465)
.+++++.|+...+++++||++.+|+ ++||+||||||||||+++|+|+. |++|.|.++|.++. .+.++|+|
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 4 VAGLSFAYGARRALDDVSFTVRPGE---FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 4678888888889999999999999 99999999999999999999999 99999999998653 24689999
Q ss_pred CCCCCCccchHHHHHHhhhcccccc---ccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~---~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
|++.+++..|+.+|+.......... ....-....+..+. ....+ ..||+.|++++ ..+|.+++
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral-----~~~p~lll 155 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARAL-----LHRPALLL 155 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 9998888899999997643211100 00000001111111 11112 24999999999 88999999
Q ss_pred eeeeecCccHHHHHHH---HHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 181 RVSVTGGVHFDLVKRV---FRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 181 lDEpts~LD~~l~rrI---lrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+|||++++|+.....+ ++++.+ +|.|+ .+.+.. ||++++|++|++...++..++
T Consensus 156 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 219 (236)
T TIGR03864 156 LDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAEL 219 (236)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999875544 455554 47777 555654 999999999999887765554
No 99
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.5e-25 Score=216.55 Aligned_cols=189 Identities=12% Similarity=0.037 Sum_probs=144.8
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccccc
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~ 110 (465)
-.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|+. |++|.|.++|.++. ++.++|
T Consensus 13 ~i~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 13 ALRNVSFRVPGRTLLHPLSLTFPAGK---VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred EEeeEEEEECCEEEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 45678888988899999999999999 99999999999999999999999 89999999998653 246899
Q ss_pred ccCCCCCCccchHHHHHHhhhccc-c----ccccccc--cccccccCc------ccccc---ccchhhhhHhHHhhhhcc
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGK-A----VQVPIYD--FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKL 174 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~-~----~~~p~~d--~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~ 174 (465)
+||++.+++..++.+|+.+..... . ......+ ....+.++. ....+ ..||+.|++++ ..
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral-----~~ 164 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV-----AQ 164 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHH-----hc
Confidence 999988888889999998642100 0 0000000 001111111 11112 23999999999 89
Q ss_pred CcceeeeeeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 175 RPLIDLRVSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 175 ~p~LdllDEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+|.++++||||+++|+...+ ++++++.++ |.|+ .+.+.++||++++|.+|++...+...++
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 165 DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 99999999999999999765 445666554 7887 7778899999999999999887776555
No 100
>PRK10908 cell division protein FtsE; Provisional
Probab=99.92 E-value=1.1e-24 Score=209.36 Aligned_cols=181 Identities=18% Similarity=0.194 Sum_probs=137.8
Q ss_pred eeeeEeee-CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------ccc
Q 012357 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (465)
Q Consensus 40 ~~~ls~~~-g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----------~~~ 107 (465)
.+++++.| +...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 4 FEHVSKAYLGGRQALQGVTFHMRPGE---MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEeeEEEecCCCeEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 46778888 66789999999999999 99999999999999999999999 89999999998653 246
Q ss_pred cccccCCCCCCccchHHHHHHhhhccccccccc-c--ccccccccCc------ccccc---ccchhhhhHhHHhhhhccC
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI-Y--DFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~-~--d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
++|+||++.+++..++.+|+.+........... . -....+..+. ....+ ..||+.|++++ ...
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~ 155 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAV-----VNK 155 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHH-----HcC
Confidence 899999998888899999998643111100000 0 0001111111 11112 24999999999 889
Q ss_pred cceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEe
Q 012357 176 PLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEP 228 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~ 228 (465)
|.++++||||+++|+.... +++++++++|.|+ .+.+..+||++++|++|+++-
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 9999999999999998654 4456665667777 678889999999999998754
No 101
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8e-25 Score=216.37 Aligned_cols=188 Identities=14% Similarity=0.123 Sum_probs=144.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~v 111 (465)
.+++++.|+...+++++||++.+|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+
T Consensus 10 i~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 86 (265)
T PRK10253 10 GEQLTLGYGKYTVAENLTVEIPDGH---FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLL 86 (265)
T ss_pred EEEEEEEECCEEEeeecceEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEe
Confidence 5778888988889999999999999 99999999999999999999999 89999999998753 2458999
Q ss_pred cCCCCCCccchHHHHHHhhhccc-c-c-cccc----cccccccccCc------ccccc---ccchhhhhHhHHhhhhccC
Q 012357 112 FDDPRLTDYDTLLENIRGLKEGK-A-V-QVPI----YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l~~~~-~-~-~~p~----~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
||++.+++..++.+|+....... . . ..+. .-....+..+. ....+ ..||+.|++++ ..+
T Consensus 87 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral-----~~~ 161 (265)
T PRK10253 87 AQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVL-----AQE 161 (265)
T ss_pred eccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHH-----hcC
Confidence 99999888889999997642110 0 0 0000 00001111111 11112 23999999999 889
Q ss_pred cceeeeeeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|.++++||||+++|+.....+ ++++.++ |.|+ .+.+..+||+++++++|++...+..+++
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999865544 4566553 8777 6788999999999999999988876665
No 102
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.1e-25 Score=221.03 Aligned_cols=188 Identities=16% Similarity=0.248 Sum_probs=141.6
Q ss_pred eeeeEeeeCc-----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~-----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+. ..+|++|||++++|+ ++||+|+||||||||+++|+|++ |++|.|.+||.++.
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 5 FDNVSYTYQKGTPYEHQAIHDVNTEFEQGK---YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEECCCCccccCceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4567777752 469999999999999 99999999999999999999999 99999999998752
Q ss_pred --ccccccccCCCC--CCccchHHHHHHhhhcccccc---ccccccccccccCcc-------cccc---ccchhhhhHhH
Q 012357 105 --SRIIDGNFDDPR--LTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIGYR-------TLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 --~~~ig~vfQ~p~--l~~~~tv~enL~~l~~~~~~~---~p~~d~~~~~~~~~~-------~~~l---~~qRVlIaegl 167 (465)
++.++|+||+|. +++ .|+.+|+.+........ ....-......++.. ...+ ..||+.|++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 246899999973 444 59999998743211100 000000111111111 1112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+....+ +++++++ .|.|+ ++.+.++||++++|.+|++...++..++.
T Consensus 161 -----~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 161 -----AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred -----HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 89999999999999999987554 4566655 48888 67788999999999999999998877763
No 103
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.92 E-value=8.6e-25 Score=213.61 Aligned_cols=186 Identities=16% Similarity=0.150 Sum_probs=142.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CC-----eeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~-----sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. |+ +|.|.++|.+..
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 4 IENLNLFYGEKEALKNINLDIPKNQ---VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEECCeeeecceeEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 4678888888889999999999999 99999999999999999999999 87 999999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhcccc-ccccc-----cc----cccc----cccCcccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA-VQVPI-----YD----FKSS----SRIGYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~-~~~p~-----~d----~~~~----~~~~~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++ .|+.+|+.+...... ..... .. +... .........+ ..||+.|++++
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 246899999999888 999999986432110 00000 00 0010 0011011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.+.++||||+++|+.....+ ++++.+ +.|+ .+.+..+||++++|++|++...++..++
T Consensus 160 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 160 -----AVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred -----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 889999999999999999875554 455544 4666 6778899999999999999988877665
No 104
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.92 E-value=1.6e-24 Score=208.49 Aligned_cols=184 Identities=16% Similarity=0.169 Sum_probs=142.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---ccccccccCCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDGNFDDP 115 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---~~~ig~vfQ~p 115 (465)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. .+.++|+||++
T Consensus 3 l~~v~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 3 TKNLSKRFGKQTAVNNISLTVPKNS---VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 4678888888889999999999999 99999999999999999999999 89999999998653 24689999999
Q ss_pred CCCccchHHHHHHhhhccccccccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeeeeec
Q 012357 116 RLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (465)
Q Consensus 116 ~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts 186 (465)
.+++..|+.+|+............. .....+..+. ....+ ..||+.+++++ ..+|.++++||||+
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral-----~~~p~llllDEP~~ 153 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSR-IDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIAL-----LNHPKLLILDEPTN 153 (223)
T ss_pred CccccCCHHHHHHHHHHHcCCCHHH-HHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHH-----hcCCCEEEECCCcc
Confidence 9888889999997643211100000 0001111111 11112 24999999999 88999999999999
Q ss_pred CccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCc
Q 012357 187 GVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQT 232 (465)
Q Consensus 187 ~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~ 232 (465)
++|+..... +++++.++|.|+ .+.+.++||+++.+.+|++...++.
T Consensus 154 ~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 208 (223)
T TIGR03740 154 GLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKI 208 (223)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecCh
Confidence 999986554 456666668777 6778899999999999999887764
No 105
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.92 E-value=6.7e-25 Score=209.24 Aligned_cols=179 Identities=20% Similarity=0.221 Sum_probs=135.9
Q ss_pred eeeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------ccc
Q 012357 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (465)
Q Consensus 40 ~~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----------~~~ 107 (465)
.+++++.|+. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.
T Consensus 3 ~~~l~~~~~~~~~~l~~~sl~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 3 FINVTKTYPNGTAALDGINISISAGE---FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred EEEEEEEeCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4678888853 689999999999999 99999999999999999999999 89999999998653 245
Q ss_pred cccccCCCCCCccchHHHHHHhhhccccccccccc---cccccccCc------ccccc---ccchhhhhHhHHhhhhccC
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
++|+||++.+++..|+.+|+.+............. ....+..+. ....+ ..||+.|++++ ..+
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~ 154 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI-----VNS 154 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH-----HcC
Confidence 89999999999989999999875321110000000 000111111 01112 24999999999 899
Q ss_pred cceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 012357 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I 226 (465)
|.+.++||||+++|+.....+ ++++.++|.|+ .+.+..+||++++|++|++
T Consensus 155 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 155 PTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999875554 45665568887 6778889999999998863
No 106
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=4.6e-25 Score=234.05 Aligned_cols=186 Identities=19% Similarity=0.305 Sum_probs=140.0
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CC----eeEEEECCeecC-----------ccccccccC
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS----IAVITMDNYNDS-----------SRIIDGNFD 113 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~----sG~I~lDg~~~~-----------~~~ig~vfQ 113 (465)
..+++||||++.+|| ++||+|.|||||||+++.|.|++ +. +|.|.++|.++. .+.|+|+||
T Consensus 22 ~~~v~~vsf~v~~GE---~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q 98 (539)
T COG1123 22 VPAVRDVSFEVEPGE---ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQ 98 (539)
T ss_pred eeeeecceEEecCCc---EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEec
Confidence 579999999999999 99999999999999999999999 33 799999998643 257999999
Q ss_pred CCC--CCccchHHHHHHhhhc-ccccc---ccccccccccccCc--------ccccc---ccchhhhhHhHHhhhhccCc
Q 012357 114 DPR--LTDYDTLLENIRGLKE-GKAVQ---VPIYDFKSSSRIGY--------RTLEV---PSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 114 ~p~--l~~~~tv~enL~~l~~-~~~~~---~p~~d~~~~~~~~~--------~~~~l---~~qRVlIaegl~aL~d~~~p 176 (465)
+|. +.+..++.+.|..... +.... .........+.++. ....+ ..|||+||.|+ +.+|
T Consensus 99 ~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmAL-----a~~P 173 (539)
T COG1123 99 DPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMAL-----ALKP 173 (539)
T ss_pred CchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHH-----hCCC
Confidence 974 4566888888876432 11000 00000000111110 01111 23999999999 9999
Q ss_pred ceeeeeeeecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEEeeCCCCCC
Q 012357 177 LIDLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~rrIl---rdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~~p~ 244 (465)
.++++||||++||+....+|+ +++.+ .|+++ +.++.++||+|.+|++|+++++|+..+++ .+..|||
T Consensus 174 ~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~-~~p~hpY 250 (539)
T COG1123 174 KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL-SNPQHPY 250 (539)
T ss_pred CEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHH-hccCCcc
Confidence 999999999999999866655 66664 48888 89999999999999999999999999984 3334443
No 107
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.4e-25 Score=214.80 Aligned_cols=188 Identities=10% Similarity=0.093 Sum_probs=143.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~v 111 (465)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|+
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 5 TENLTVGYGTKRILNDLSLSLPTGK---ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEeEEEEECCEEEEeeeeeEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 4678888888889999999999999 99999999999999999999999 89999999998643 2458999
Q ss_pred cCCCCCCccchHHHHHHhhhccc----c-c-c-ccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccC
Q 012357 112 FDDPRLTDYDTLLENIRGLKEGK----A-V-Q-VPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l~~~~----~-~-~-~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
||++.+++..|+.+|+.+..... . . . ....-....+..+. ....+ ..||+.|++++ ..+
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~ 156 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVL-----AQD 156 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHH-----hcC
Confidence 99998888889999987632100 0 0 0 00000000111111 11112 23999999999 899
Q ss_pred cceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|.++++||||+++|+.....+ ++++.++|.|+ .+.+.++||+++++++|++...++..++
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 157 TPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 999999999999999875544 45555568887 7788999999999999999877766554
No 108
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.6e-25 Score=219.34 Aligned_cols=188 Identities=14% Similarity=0.146 Sum_probs=141.8
Q ss_pred eeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccc
Q 012357 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~i 108 (465)
.+++++.|+. ..+|+++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.+||.++. ++.+
T Consensus 7 ~~~l~~~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGE---WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred EEeEEEEcCCCCcCeeeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 4667777752 469999999999999 99999999999999999999999 99999999998764 2468
Q ss_pred ccccCCCC-CCccchHHHHHHhhhccccccc---cccccccccccCc------ccccc---ccchhhhhHhHHhhhhccC
Q 012357 109 DGNFDDPR-LTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 109 g~vfQ~p~-l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
+|+||+|. .+...|+.+|+.+......... ...-....+.++. ....+ ..||+.||+++ ..+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral-----~~~ 158 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV-----AMR 158 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH-----HcC
Confidence 99999984 6777899999986532111100 0000001111111 11122 24999999999 899
Q ss_pred cceeeeeeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
|.++++||||+++|+.....+ +++++++ |.|+ ++.+ .+||+++++++|++...++..++.
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999875544 5666654 8888 5566 479999999999999998877763
No 109
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1e-24 Score=207.88 Aligned_cols=180 Identities=15% Similarity=0.142 Sum_probs=135.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+... .++||++.+|+ +++|+||||||||||+++|+|+. |++|.|.++|.++. ++.++|+||
T Consensus 3 ~~~l~~~~~~~~--~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 3 LDKIRFSYGEQP--MHFDLTFAQGE---ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred EEeEEEEeCCEe--cceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 467788887654 39999999999 99999999999999999999999 89999999998753 346899999
Q ss_pred CCCCCccchHHHHHHhhhccc-ccc-c-cccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGK-AVQ-V-PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~-~~~-~-p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+++..|+.+|+.+..... ... . ...-....+..+. ....+ ..||+.|++++ ..+|.++++
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al-----~~~p~llll 152 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVL-----VRDKPVLLL 152 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 999998899999997643210 000 0 0000001111111 11112 24999999999 889999999
Q ss_pred eeeecCccHHHHHH---HHHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEec
Q 012357 182 VSVTGGVHFDLVKR---VFRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPD 229 (465)
Q Consensus 182 DEpts~LD~~l~rr---Ilrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~ 229 (465)
||||+++|+..... +++++.+ +|.|+ .+.+.++||+++++++|++...
T Consensus 153 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 153 DEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 99999999986554 4455554 48887 6778899999999999998754
No 110
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.9e-25 Score=219.49 Aligned_cols=188 Identities=15% Similarity=0.213 Sum_probs=141.6
Q ss_pred eeeeEeeeCc-----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~-----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+. +.+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+||.++.
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 5 FENVDYIYSPGTPMEKKGLDNISFELEEGS---FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEcCCCCCccccceeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4678888863 469999999999999 99999999999999999999999 99999999998752
Q ss_pred --ccccccccCCCC-CCccchHHHHHHhhhcccccc---ccccccccccccCc-------ccccc---ccchhhhhHhHH
Q 012357 105 --SRIIDGNFDDPR-LTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIGY-------RTLEV---PSSRIVIIEGIY 168 (465)
Q Consensus 105 --~~~ig~vfQ~p~-l~~~~tv~enL~~l~~~~~~~---~p~~d~~~~~~~~~-------~~~~l---~~qRVlIaegl~ 168 (465)
++.++|+||++. .+...|+.+|+.+........ ....-....+..+. ....+ ..||+.|++++
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral- 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM- 160 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH-
Confidence 235899999973 233579999997642211100 00000000111111 11112 24999999999
Q ss_pred hhhhccCcceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 169 ALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 169 aL~d~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.... ++++++.++|.|+ ++.+..+||+++++++|++...++..++
T Consensus 161 ----~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13641 161 ----AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI 232 (287)
T ss_pred ----HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8999999999999999998654 4456666668888 7888999999999999999998887765
No 111
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.92 E-value=7.5e-25 Score=208.66 Aligned_cols=178 Identities=16% Similarity=0.208 Sum_probs=133.0
Q ss_pred eeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGE---FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVG 78 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhce
Confidence 3578888876 789999999999999 99999999999999999999999 99999999998653 24689
Q ss_pred cccCCCC-CCccchHHHHHHhhhccccccccccc---cccccccCc------ccccc---ccchhhhhHhHHhhhhccCc
Q 012357 110 GNFDDPR-LTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 110 ~vfQ~p~-l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p 176 (465)
|+||++. .++..|+.+|+.+............. ....+..+. ....+ ..||+.|++++ ..+|
T Consensus 79 ~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral-----~~~p 153 (211)
T cd03225 79 LVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVL-----AMDP 153 (211)
T ss_pred EEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH-----hcCC
Confidence 9999985 35568999999764211100000000 000111111 11112 24999999999 8899
Q ss_pred ceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcE
Q 012357 177 LIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~ 225 (465)
.++++||||+++|+.....+ ++++.++|.|+ .+.+..+||++++|.+|+
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999875544 45555567777 677889999999998873
No 112
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.7e-24 Score=213.16 Aligned_cols=186 Identities=15% Similarity=0.116 Sum_probs=141.4
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. | ++|+|.++|.++.
T Consensus 15 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 91 (258)
T PRK14268 15 VENLNLWYGEKQALKNVSMQIPKNS---VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVEL 91 (258)
T ss_pred EeeeEEEeCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHH
Confidence 4678888887889999999999999 99999999999999999999998 4 6999999998752
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccccccccc---ccccccc----------Ccccccc---ccchhhhhHhHH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRI----------GYRTLEV---PSSRIVIIEGIY 168 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~----------~~~~~~l---~~qRVlIaegl~ 168 (465)
++.++|+||++.+++ .|+.+|+.+............. ....+.. ......+ ..||+.|++++
T Consensus 92 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral- 169 (258)
T PRK14268 92 RKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL- 169 (258)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHH-
Confidence 245899999998887 8999999864311100000000 0000111 1011112 24999999999
Q ss_pred hhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 169 aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.....+. +++. +|.|+ .+.+.++||++++|++|++...+...++
T Consensus 170 ----~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 170 ----AVKPKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred ----HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8899999999999999998765544 5554 37776 6778899999999999999998887766
No 113
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=1.2e-24 Score=213.00 Aligned_cols=191 Identities=17% Similarity=0.228 Sum_probs=138.6
Q ss_pred eeeeeccCcceeeceeeeeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECC
Q 012357 23 VQLVKKKDSDRYEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (465)
Q Consensus 23 ~~l~~~~~~k~y~~~~v~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg 100 (465)
+.+..++.+|.|....- |... ...|+++|||++.+|+ ++||+|.|||||||+.|+|.+++ |++|.|.++|
T Consensus 3 ~ll~v~~l~k~f~~~~~-----~~~~~~v~avd~Vsf~i~~ge---~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g 74 (268)
T COG4608 3 PLLEVKNLKKYFPVGKG-----FGKKRYVKAVDGVSFSIKEGE---TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG 74 (268)
T ss_pred ceEEEeccEEEEecccc-----cCcccceEEecceeEEEcCCC---EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcC
Confidence 45667777887754322 3332 4789999999999999 99999999999999999999999 9999999999
Q ss_pred eecCccccccccCCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceee
Q 012357 101 YNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 101 ~~~~~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
.++.... ..-....+.+.+.... .....+..-.++.+|+ ..|||.||+|+ +++|.+.+
T Consensus 75 ~~i~~~~--------~~~~~~~v~elL~~Vg----l~~~~~~ryPhelSGG-----QrQRi~IARAL-----al~P~liV 132 (268)
T COG4608 75 KDITKLS--------KEERRERVLELLEKVG----LPEEFLYRYPHELSGG-----QRQRIGIARAL-----ALNPKLIV 132 (268)
T ss_pred cchhhcc--------hhHHHHHHHHHHHHhC----CCHHHhhcCCcccCch-----hhhhHHHHHHH-----hhCCcEEE
Confidence 8754211 0000011222222211 1111112222333443 34899999999 99999999
Q ss_pred eeeeecCccHHHH---HHHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEEeeCCCCCC
Q 012357 181 RVSVTGGVHFDLV---KRVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (465)
Q Consensus 181 lDEpts~LD~~l~---rrIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~~p~ 244 (465)
+|||+++||.... ..++++++++ |.|. ..++.++||++++|+.|+|++.++..+++- +..|||
T Consensus 133 ~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~-~p~HpY 205 (268)
T COG4608 133 ADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS-NPLHPY 205 (268)
T ss_pred ecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh-CCCCHH
Confidence 9999999999754 4556787765 8887 899999999999999999999999998842 334443
No 114
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.5e-24 Score=202.00 Aligned_cols=156 Identities=21% Similarity=0.224 Sum_probs=131.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------ccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------~~~ig 109 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|+|.++|.+.. ++.++
T Consensus 3 ~~~l~~~~~~~~~l~~i~~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 3 LKNVSKRYGQKTVLNDVSLNIEAGE---IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred EEEEEEEECCeEEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 4678888888889999999999999 99999999999999999999999 89999999998643 24689
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCcc
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD 189 (465)
|++|++.+++..++.+|+... .++ ...||+.|++++ ..+|.+.++|||++++|
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~-----------------lS~-----G~~qr~~la~al-----~~~p~llilDEP~~~LD 132 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG-----------------LSG-----GQQQRVALARAL-----AMDPDVLLLDEPTSALD 132 (178)
T ss_pred EEecCCccCCCCCHHHheeec-----------------CCH-----HHHHHHHHHHHH-----HCCCCEEEEeCCcccCC
Confidence 999999988888999887542 112 124899999999 89999999999999999
Q ss_pred HHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcE
Q 012357 190 FDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 190 ~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~ 225 (465)
+.... +++++++++ |.|+ .+.+..+||+++.|.+|+
T Consensus 133 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 133 PITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 98655 445666666 7777 677888999999998773
No 115
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=5.4e-25 Score=199.81 Aligned_cols=187 Identities=17% Similarity=0.161 Sum_probs=146.6
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec--C-----------c
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--S-----------S 105 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~--~-----------~ 105 (465)
.+++++.||...+|-||+|+.++|+ .+.++||||||||||+|.|+-+. |.+|++.+-|... + |
T Consensus 5 v~~in~~yg~~q~lfdi~l~~~~ge---tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 5 LNGINCFYGAHQALFDITLDCPEGE---TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred EcccccccccchheeeeeecCCCCC---EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 4678999999999999999999999 99999999999999999999988 9999999987542 1 4
Q ss_pred cccccccCCCCCCccchHHHHHHhhh-c--cccc-ccccccccc---------ccccCccccccccchhhhhHhHHhhhh
Q 012357 106 RIIDGNFDDPRLTDYDTLLENIRGLK-E--GKAV-QVPIYDFKS---------SSRIGYRTLEVPSSRIVIIEGIYALSE 172 (465)
Q Consensus 106 ~~ig~vfQ~p~l~~~~tv~enL~~l~-~--~~~~-~~p~~d~~~---------~~~~~~~~~~l~~qRVlIaegl~aL~d 172 (465)
+.+||+||..++|+.+|+.+|+.... + +-.. ......... .++.+........|||.|++|+
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaral----- 156 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARAL----- 156 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHH-----
Confidence 67999999999999999999986531 1 1000 000000000 1111111111234999999999
Q ss_pred ccCcceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcce
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aD 234 (465)
.+.|.+++.||||+++||+... .|++++.+.|.|- .++.+..+.+|.-|++|+|++.|+.+.
T Consensus 157 mmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 157 MMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 9999999999999999999654 5668888788775 788999999999999999999998653
No 116
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.7e-24 Score=215.47 Aligned_cols=189 Identities=16% Similarity=0.209 Sum_probs=142.8
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccccc
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~ 110 (465)
.+++++.|+ ...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|+++. ++.++|
T Consensus 6 ~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 6 TRDLCYSYSGSKEALNNINFIAPRNS---RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEeCCCCceeeEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 467888884 4569999999999999 99999999999999999999999 99999999998753 235899
Q ss_pred ccCCCC-CCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcc
Q 012357 111 NFDDPR-LTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPL 177 (465)
Q Consensus 111 vfQ~p~-l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~ 177 (465)
+||++. .+...|+.+|+.+........... .-....+..+. ....+ ..||+.|++++ ..+|.
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL-----~~~p~ 157 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVI-----AMEPQ 157 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH-----HcCCC
Confidence 999984 233579999997643211110000 00000111111 11112 24999999999 89999
Q ss_pred eeeeeeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 178 IDLRVSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 178 LdllDEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
++++||||+++|+.... ++++++.++ |.|+ .+.+.++||++++|++|+++..++..+++
T Consensus 158 llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 158 VLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 99999999999998654 455666655 8887 67888999999999999999999887764
No 117
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2e-24 Score=209.28 Aligned_cols=183 Identities=15% Similarity=0.163 Sum_probs=136.1
Q ss_pred eeeeEeeeCc----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 012357 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (465)
Q Consensus 40 ~~~ls~~~g~----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------- 104 (465)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++.
T Consensus 8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGE---MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred EEeEEEEcCCCCcceeeEEeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 4667777753 579999999999999 99999999999999999999999 89999999998753
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhcccccccc---ccccccccccCc------ccccc---ccchhhhhHhHHhhh
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~ 171 (465)
++.++|+||++.+++..|+.+|+.+.......... ..-....+..+. ....+ ..||+.|++++
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al---- 160 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARAL---- 160 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH----
Confidence 14589999999988888999999764211000000 000001111111 11112 24999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHH---HHHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCC
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~ 231 (465)
...|.++++||||+++|+..... +++++++ +|.|+ .+.+..+ +++++|++|+++..+.
T Consensus 161 -~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 161 -VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELS 228 (233)
T ss_pred -hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEec
Confidence 88999999999999999987554 4566654 48887 5666665 6999999999976554
No 118
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.6e-24 Score=216.49 Aligned_cols=189 Identities=15% Similarity=0.168 Sum_probs=143.9
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------cccc
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------~~~i 108 (465)
.+++++.|+ ...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.+
T Consensus 8 ~~~l~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 8 VEELNYNYSDGTHALKGININIKKGE---VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred EEeEEEEeCCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 577888885 5779999999999999 99999999999999999999999 99999999998752 2458
Q ss_pred ccccCCCC-CCccchHHHHHHhhhcccccccc---ccccccccccCc------ccccc---ccchhhhhHhHHhhhhccC
Q 012357 109 DGNFDDPR-LTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 109 g~vfQ~p~-l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
+|+||++. .+...|+.+|+.+.......... ..-....+..+. ....+ ..||+.|++++ ..+
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL-----~~~ 159 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL-----VME 159 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHH-----HcC
Confidence 99999984 33457999999764321110000 000000111111 11112 23999999999 899
Q ss_pred cceeeeeeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 176 PLIDLRVSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
|.++++||||+++|+.... ++++.+.++ |.|+ ++.+..+||++++|++|++...|+..++.
T Consensus 160 p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 160 PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999998765 455666654 8888 67788999999999999999999887763
No 119
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.92 E-value=1.6e-24 Score=223.20 Aligned_cols=186 Identities=15% Similarity=0.105 Sum_probs=142.6
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------cccc
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRII 108 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----------~~~i 108 (465)
.++++.|+.+.+ ++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.+
T Consensus 3 ~~l~~~~~~~~~--~isl~i~~Ge---i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i 77 (354)
T TIGR02142 3 ARFSKRLGDFSL--DADFTLPGQG---VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRI 77 (354)
T ss_pred EEEEEEECCEEE--EEEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCe
Confidence 367888887664 8999999999 99999999999999999999999 99999999998642 3468
Q ss_pred ccccCCCCCCccchHHHHHHhhhccccccc-cccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcce
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQV-PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLI 178 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~~~~~-p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~L 178 (465)
+|+||++.+++..|+.+|+.+......... ...-....+..+. ....+ ..||+.|++++ ..+|.+
T Consensus 78 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL-----~~~p~l 152 (354)
T TIGR02142 78 GYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRAL-----LSSPRL 152 (354)
T ss_pred EEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH-----HcCCCE
Confidence 999999999999999999987432111000 0000001111111 11112 24999999999 899999
Q ss_pred eeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 179 DLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 179 dllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+++|||+++||+..... +++++.++ |.|+ .+.+..+||++++|++|++...++..++.
T Consensus 153 llLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 153 LLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 99999999999987554 45666554 7877 67788999999999999999998877763
No 120
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=223.84 Aligned_cols=182 Identities=15% Similarity=0.131 Sum_probs=141.6
Q ss_pred eeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------ccccc
Q 012357 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (465)
Q Consensus 42 ~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----------~~~ig 109 (465)
++++.|+.+.+ ++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.++
T Consensus 5 ~l~k~~~~~~~--~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~ 79 (352)
T PRK11144 5 NFKQQLGDLCL--TVNLTLPAQG---ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG 79 (352)
T ss_pred EEEEEeCCEEE--EEEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEE
Confidence 67788876543 8999999999 99999999999999999999999 99999999997642 35689
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceee
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
|+||++.+++..|+.+|+.+...... .... ....+.++. ....+ ..|||.|++++ ..+|.+++
T Consensus 80 ~v~q~~~l~~~~tv~enl~~~~~~~~-~~~~--~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL-----~~~p~llL 151 (352)
T PRK11144 80 YVFQDARLFPHYKVRGNLRYGMAKSM-VAQF--DKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRAL-----LTAPELLL 151 (352)
T ss_pred EEcCCcccCCCCcHHHHHHhhhhhhh-HHHH--HHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH-----HcCCCEEE
Confidence 99999999999999999987432110 0000 000111111 11112 24999999999 89999999
Q ss_pred eeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 181 RVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 181 lDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+||||++||+..... +++++.++ |.|+ .+.+..+||++++|++|++...++..++.
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 152 MDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999986554 45566554 7777 67788999999999999999999888773
No 121
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.8e-24 Score=211.62 Aligned_cols=185 Identities=16% Similarity=0.145 Sum_probs=140.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--ccccccccCCCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPR 116 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--~~~ig~vfQ~p~ 116 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ...++|+||++.
T Consensus 4 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 4 ISHLYADYGGKPALEDINLTLESGE---LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred EEEEEEEeCCeeeEeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 4678888887889999999999999 99999999999999999999999 89999999998764 245899999999
Q ss_pred CCccchHHHHHHhhhcccccccc---ccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeeee
Q 012357 117 LTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (465)
Q Consensus 117 l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEp 184 (465)
+++..|+.+|+.+.......... ..-....+..+. ....+ ..||+.|++++ ..+|.++++|||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral-----~~~p~lllLDEP 155 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARAL-----AANPQLLLLDEP 155 (255)
T ss_pred cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCC
Confidence 99889999999764211100000 000001111111 11112 24999999999 889999999999
Q ss_pred ecCccHHHHHHH---HHHHHH-cCCCH------HHHHHHHhceEEEcc--CcEEEecCCc
Q 012357 185 TGGVHFDLVKRV---FRDIQR-VGQEP------EEIIHQISETVYPMY--KAFIEPDLQT 232 (465)
Q Consensus 185 ts~LD~~l~rrI---lrdl~e-~G~TI------~~vi~~i~d~V~~m~--~G~I~~~g~~ 232 (465)
|+++|+.....+ ++++.+ .|.|+ .+.+..+||++++|. +|++.+....
T Consensus 156 t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 156 FGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999875554 455543 48887 678889999999998 5998876543
No 122
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.92 E-value=1.4e-24 Score=214.01 Aligned_cols=188 Identities=15% Similarity=0.185 Sum_probs=142.2
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CC---eeEEEECCeecC-----------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS----------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~---sG~I~lDg~~~~----------- 104 (465)
.+++++.|+...+++++||++.+|+ +++|+|+||||||||+++|+|+. |+ +|.|.++|.++.
T Consensus 7 ~~nl~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (262)
T PRK09984 7 VEKLAKTFNQHQALHAVDLNIHHGE---MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83 (262)
T ss_pred EeeEEEEeCCeEEEecceEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence 4678888888889999999999999 99999999999999999999999 65 499999998652
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhcccc-c-----c--ccc---cccccccccCc------ccccc---ccchhhh
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA-V-----Q--VPI---YDFKSSSRIGY------RTLEV---PSSRIVI 163 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~-~-----~--~p~---~d~~~~~~~~~------~~~~l---~~qRVlI 163 (465)
++.++|+||++.+++..|+.+|+.+...... . . .+. .-....+..+. ....+ ..||+.|
T Consensus 84 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 163 (262)
T PRK09984 84 SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAI 163 (262)
T ss_pred HHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHH
Confidence 2358999999999988999999976421100 0 0 000 00001111111 11112 2499999
Q ss_pred hHhHHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCcc
Q 012357 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (465)
Q Consensus 164 aegl~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~a 233 (465)
++++ ..+|.++++||||+++|+..... +++++.+ +|.|+ .+.+..+||+++++++|++...++.+
T Consensus 164 aral-----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 164 ARAL-----MQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHH-----hcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999 88999999999999999986554 4566654 48887 67788999999999999998888766
Q ss_pred eE
Q 012357 234 HI 235 (465)
Q Consensus 234 DI 235 (465)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 53
No 123
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.92 E-value=2.2e-24 Score=209.61 Aligned_cols=188 Identities=14% Similarity=0.176 Sum_probs=142.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc--C-CCeeEEEECCeecC--------cccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDS--------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl--l-P~sG~I~lDg~~~~--------~~~i 108 (465)
.+++++.|+...+++++||++++|+ +++|+||||||||||+++|+|+ . |++|.|.++|.+.. +..+
T Consensus 3 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 3 IKDLHVSVEDKEILKGVNLTVKKGE---IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred EeeEEEEECCEEEEeccceEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 4678899988889999999999999 9999999999999999999999 4 79999999998653 1237
Q ss_pred ccccCCCCCCccchHHHHHHhhhcccc-------ccccccc---cccccccCc------cc-cc-c---ccchhhhhHhH
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGKA-------VQVPIYD---FKSSSRIGY------RT-LE-V---PSSRIVIIEGI 167 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~~-------~~~p~~d---~~~~~~~~~------~~-~~-l---~~qRVlIaegl 167 (465)
+|+||++.+++..|+.+++.+...... ....... ....+..+. .. .. + ..||+.|++++
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 899999999999999999876422100 0000000 000000110 11 11 2 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHH-hceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQI-SETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i-~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+..... +++++.++|.|+ .+.+..+ ||++++|++|++...++..++
T Consensus 160 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 160 -----LLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred -----hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 88999999999999999987554 446666668887 6777888 899999999999888776544
No 124
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1e-24 Score=216.32 Aligned_cols=189 Identities=16% Similarity=0.166 Sum_probs=142.0
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------ccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------~~~ig 109 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.++
T Consensus 4 ~~~l~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 4 TSDLWFRYQDEPVLKGLNLDFSLSP---VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred EEEEEEEcCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 4678888887889999999999999 99999999999999999999999 99999999998752 24589
Q ss_pred cccCCCCC-CccchHHHHHHhhhccccccccc-cc--cccccccCc------ccccc---ccchhhhhHhHHhhhhccCc
Q 012357 110 GNFDDPRL-TDYDTLLENIRGLKEGKAVQVPI-YD--FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 110 ~vfQ~p~l-~~~~tv~enL~~l~~~~~~~~p~-~d--~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p 176 (465)
|+||++.. +...++.+|+.+........... .. ....+..+. ....+ ..||+.|++++ ..+|
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL-----~~~p 155 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGAL-----VLQA 155 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHH-----HcCC
Confidence 99999763 34457888887642111100000 00 001111111 11112 24999999999 8999
Q ss_pred ceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 177 LIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.++++||||+++|+..... +++++.++|.|+ .+.+..+||++++|.+|++...+...++.
T Consensus 156 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999987554 456666568887 67788999999999999999988877653
No 125
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.3e-24 Score=210.81 Aligned_cols=187 Identities=16% Similarity=0.143 Sum_probs=142.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC-------cc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------SR 106 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~-------~~ 106 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. | ++|.|.++|.++. ++
T Consensus 6 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 6 IRDLKVSFGQVEVLDGVNLEIPDNT---ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred EEeeEEEECCeeeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 4678888887889999999999999 99999999999999999999998 4 5999999998753 24
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccccc--cccccc---cccccccCc----------ccccc---ccchhhhhHhHH
Q 012357 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAV--QVPIYD---FKSSSRIGY----------RTLEV---PSSRIVIIEGIY 168 (465)
Q Consensus 107 ~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~--~~p~~d---~~~~~~~~~----------~~~~l---~~qRVlIaegl~ 168 (465)
.++|+||++.+++..|+.+|+.+....... ...... ....+..+. ....+ ..||+.|++++
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral- 161 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARAL- 161 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHH-
Confidence 689999999888889999999764311000 000000 000011110 11112 24999999999
Q ss_pred hhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 169 aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+....++. +++. +|.|+ .+.+.++||++++|.+|++...++..++
T Consensus 162 ----~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 162 ----AFQPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred ----hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 8899999999999999998766554 4443 37777 6778899999999999999988887776
No 126
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=1.6e-24 Score=232.96 Aligned_cols=187 Identities=15% Similarity=0.104 Sum_probs=145.8
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc--------ccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~--------~~ig~ 110 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++.. +.++|
T Consensus 14 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 90 (510)
T PRK15439 14 ARSISKQYSGVEVLKGIDFTLHAGE---VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYL 90 (510)
T ss_pred EEeEEEEeCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4678888888889999999999999 99999999999999999999999 999999999987531 35899
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
+||++.+++..|+.+|+.+...... .....-....+.++. ....+ ..|||.|++++ ..+|.++++
T Consensus 91 v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL-----~~~p~lllL 164 (510)
T PRK15439 91 VPQEPLLFPNLSVKENILFGLPKRQ-ASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGL-----MRDSRILIL 164 (510)
T ss_pred EeccCccCCCCcHHHHhhcccccch-HHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHH-----HcCCCEEEE
Confidence 9999999999999999986432110 000000000011110 01112 24999999999 899999999
Q ss_pred eeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
||||++||+..... +++++.++|.|+ .+.+..+||++++|++|++...|+..++
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 165 DEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999986554 456666678887 6778899999999999999988877665
No 127
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.5e-24 Score=220.53 Aligned_cols=189 Identities=16% Similarity=0.141 Sum_probs=143.1
Q ss_pred eeeeeEeeeCc-----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------
Q 012357 39 IEDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------- 104 (465)
Q Consensus 39 v~~~ls~~~g~-----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------- 104 (465)
-.+++++.|+. ..+|++|||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++.
T Consensus 23 ~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 23 RVKNLYCVFDEKQENELVALNNISYTFEKNK---IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred EEEeEEEEeCCCCcccccceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 35788888863 369999999999999 99999999999999999999999 99999999997532
Q ss_pred ---------------ccccccccCCCC--CCccchHHHHHHhhhccccccc---cccccccccccCc-------ccccc-
Q 012357 105 ---------------SRIIDGNFDDPR--LTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY-------RTLEV- 156 (465)
Q Consensus 105 ---------------~~~ig~vfQ~p~--l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~-------~~~~l- 156 (465)
++.++|+||+|. +++ .|+.+|+.+......... ........+.++. ....+
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 245899999983 554 599999976432111000 0000000111111 11112
Q ss_pred --ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcE
Q 012357 157 --PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 157 --~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~ 225 (465)
..||+.|++++ ..+|.++++||||++||+.....+ +++++++|.|+ ++.+.++||++++|.+|+
T Consensus 179 gGqkqRvaiAraL-----~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 179 GGQKRRVAIAGIL-----AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred HHHHHHHHHHHHH-----HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 24999999999 999999999999999999976555 45556678888 677889999999999999
Q ss_pred EEecCCcceEE
Q 012357 226 IEPDLQTAHIK 236 (465)
Q Consensus 226 I~~~g~~aDIi 236 (465)
++..|++.++.
T Consensus 254 i~~~g~~~~~~ 264 (320)
T PRK13631 254 ILKTGTPYEIF 264 (320)
T ss_pred EEEeCCHHHHh
Confidence 99999988773
No 128
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.8e-24 Score=212.00 Aligned_cols=187 Identities=16% Similarity=0.125 Sum_probs=142.4
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CC-----eeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~-----sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |+ +|.|.++|.++.
T Consensus 7 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (253)
T PRK14267 7 TVNLRVYYGSNHVIKGVDLKIPQNG---VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV 83 (253)
T ss_pred EEeEEEEeCCeeeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHH
Confidence 4678888887889999999999999 99999999999999999999999 63 999999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccc--cccccc---cccccccC----------cccccc---ccchhhhhHh
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV--QVPIYD---FKSSSRIG----------YRTLEV---PSSRIVIIEG 166 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~--~~p~~d---~~~~~~~~----------~~~~~l---~~qRVlIaeg 166 (465)
++.++|+||++.+++..|+.+|+.+....... ...... ....+..+ .....+ ..||+.|+++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 163 (253)
T PRK14267 84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARA 163 (253)
T ss_pred hhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHH
Confidence 24689999999999889999999764311110 000000 00001111 011112 2499999999
Q ss_pred HHhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 167 l~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+ ..+|.++++|||++++|+.....+. +++.+ +.|+ .+.+..+||++++|++|++.+.++..++
T Consensus 164 l-----~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 164 L-----AMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred H-----hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9 8899999999999999998765554 45443 6676 6778899999999999999988877665
No 129
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.1e-24 Score=205.73 Aligned_cols=181 Identities=17% Similarity=0.114 Sum_probs=136.6
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vf 112 (465)
.+++++.|+...+++++||++++| +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+|
T Consensus 3 ~~~~~~~~~~~~~l~~vs~~i~~g----~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 3 LENLTKRYGKKRALDGVSLTLGPG----MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred EEEEEEEECCEEEEcceeEEEcCC----cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 467888998888999999999984 79999999999999999999999 99999999998653 35689999
Q ss_pred CCCCCCccchHHHHHHhhhcccccc---ccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~---~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
|++.+++..|+.+|+.+........ ....-....+..+. ....+ ..||+.|++++ ..+|.+++
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~p~lll 153 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQAL-----VGDPSILI 153 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 9999998899999997642110000 00000000111111 11112 24999999999 89999999
Q ss_pred eeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 181 RVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 181 lDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
+||||+++|+.....+. +++++ +.|+ .+.+.++||++++|++|++...|
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 154 VDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999998765554 55443 5666 67788899999999999987643
No 130
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.91 E-value=2.2e-24 Score=206.92 Aligned_cols=179 Identities=18% Similarity=0.184 Sum_probs=133.1
Q ss_pred eeeeEeeeCc----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 012357 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (465)
Q Consensus 40 ~~~ls~~~g~----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------- 104 (465)
.+++++.|+. ..+++++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++.
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 4 CENLGKRYQEGKLDTRVLKGVSLSIGKGE---IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred EEeeeEEccCCCcceEeEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 4678888853 579999999999999 99999999999999999999999 89999999998753
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhcccccccc---ccccccccccCc------ccccc---ccchhhhhHhHHhhh
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~ 171 (465)
++.++|+||++.+++..|+.+|+.+.......... ..-....+..+. ....+ ..||+.|++++
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral---- 156 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARAL---- 156 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH----
Confidence 14589999999988889999999763211000000 000001111111 11112 24999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIE 227 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~ 227 (465)
..+|.++++||||+++|+.....+ ++++.++ |.|+ .+.+.. ||++++|++|+++
T Consensus 157 -~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 157 -VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred -hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 899999999999999999865544 4555543 7777 555654 7999999999874
No 131
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.91 E-value=1.7e-24 Score=232.32 Aligned_cols=188 Identities=14% Similarity=0.082 Sum_probs=145.4
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.|++..+++++||++.+|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 7 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 83 (501)
T PRK10762 7 LKGIDKAFPGVKALSGAALNVYPGR---VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83 (501)
T ss_pred EeeeEEEeCCeEEeeeeeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 4678888888889999999999999 99999999999999999999999 99999999998753 245899
Q ss_pred ccCCCCCCccchHHHHHHhhhccc----ccccc---ccccccccccCcc------cccc---ccchhhhhHhHHhhhhcc
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGK----AVQVP---IYDFKSSSRIGYR------TLEV---PSSRIVIIEGIYALSEKL 174 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~----~~~~p---~~d~~~~~~~~~~------~~~l---~~qRVlIaegl~aL~d~~ 174 (465)
+||++.+++..|+.+|+.+..... ..... ..-....+.++.. ...+ ..|||.||+++ ..
T Consensus 84 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al-----~~ 158 (501)
T PRK10762 84 IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL-----SF 158 (501)
T ss_pred EEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH-----hc
Confidence 999999999999999998642110 00000 0000011111111 1112 24999999999 89
Q ss_pred CcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 175 RPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 175 ~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+|.++++||||++||+.....+ ++++.++|.|+ .+.+..+||+++++++|++...+...++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999865554 56666668887 6788899999999999999887766554
No 132
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.3e-24 Score=203.16 Aligned_cols=171 Identities=15% Similarity=0.077 Sum_probs=134.8
Q ss_pred eeeeEeeeC----cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC----CCeeEEEECCeecC------c
Q 012357 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDS------S 105 (465)
Q Consensus 40 ~~~ls~~~g----~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll----P~sG~I~lDg~~~~------~ 105 (465)
.++++|.|+ ...+++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.++|.+.. +
T Consensus 6 ~~~~~~~~~~~~~~~~il~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 6 WRNISFTTGKGRSKIPILKDFSGVVKPGE---MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred EEccEEEeccCCCCceeeeeEEEEECCCc---EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 467788874 5689999999999999 99999999999999999999997 36999999998753 3
Q ss_pred cccccccCCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeee
Q 012357 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (465)
Q Consensus 106 ~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpt 185 (465)
+.++|+||++.+++..|+.+|+.+..... .+......++ ...||+.|++++ ..+|.++++|||+
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------~~~~~~~LS~-----Ge~qrl~laral-----~~~p~llllDEPt 146 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK------GNEFVRGISG-----GERKRVSIAEAL-----VSRASVLCWDNST 146 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc------cccchhhCCH-----HHHHHHHHHHHH-----hhCCCEEEEcCCC
Confidence 46899999998888899999998643211 0101111111 234899999999 8899999999999
Q ss_pred cCccHHHHHH---HHHHHHHc-CCCH-------HHHHHHHhceEEEccCcEEEec
Q 012357 186 GGVHFDLVKR---VFRDIQRV-GQEP-------EEIIHQISETVYPMYKAFIEPD 229 (465)
Q Consensus 186 s~LD~~l~rr---Ilrdl~e~-G~TI-------~~vi~~i~d~V~~m~~G~I~~~ 229 (465)
+++|+...+. +++++.++ +.|+ .+.+.++||++++|++|+++..
T Consensus 147 ~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~ 201 (202)
T cd03233 147 RGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201 (202)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEec
Confidence 9999986554 44565554 5553 3677889999999999998764
No 133
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2e-24 Score=211.91 Aligned_cols=186 Identities=16% Similarity=0.167 Sum_probs=140.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ | ++|.|.++|.++.
T Consensus 10 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (254)
T PRK14273 10 TENLNLFYTDFKALNNINIKILKNS---ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL 86 (254)
T ss_pred EeeeEEEeCCceeecceeeEEcCCC---EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHH
Confidence 4677888877789999999999999 99999999999999999999999 6 4899999998642
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccc-ccccc-c--ccccccc----------Ccccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV-QVPIY-D--FKSSSRI----------GYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~-~~p~~-d--~~~~~~~----------~~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.++. .|+.+|+.+....... ..... . ....+.. ......+ ..||+.|++++
T Consensus 87 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral 165 (254)
T PRK14273 87 RRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL 165 (254)
T ss_pred hhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 345899999998885 8999999864321100 00000 0 0000000 1011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.....+ +++++ ++.|+ .+.+..+||++++|.+|++...+...++
T Consensus 166 -----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 166 -----AIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred -----HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 889999999999999999876554 45554 36676 6778899999999999999998887776
No 134
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.91 E-value=2.3e-24 Score=213.15 Aligned_cols=189 Identities=16% Similarity=0.199 Sum_probs=141.9
Q ss_pred eeeeEeeeC---------cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----
Q 012357 40 EDTLSFEKG---------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (465)
Q Consensus 40 ~~~ls~~~g---------~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----- 104 (465)
.+++++.|+ ...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++.
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 5 VRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGE---TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred EEeEEEEeccCccccccCceEEeeCceeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 356777774 4689999999999999 99999999999999999999999 99999999998753
Q ss_pred -----ccccccccCCCC--CCccchHHHHHHhhhcc-ccccc---cccccccccccCc-------ccccc---ccchhhh
Q 012357 105 -----SRIIDGNFDDPR--LTDYDTLLENIRGLKEG-KAVQV---PIYDFKSSSRIGY-------RTLEV---PSSRIVI 163 (465)
Q Consensus 105 -----~~~ig~vfQ~p~--l~~~~tv~enL~~l~~~-~~~~~---p~~d~~~~~~~~~-------~~~~l---~~qRVlI 163 (465)
++.++|+||++. +++..++.+|+.+.... ..... ...-....+..+. ....+ ..||+.|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 235899999973 55678999998653211 00000 0000001111111 01112 2499999
Q ss_pred hHhHHhhhhccCcceeeeeeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcc
Q 012357 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (465)
Q Consensus 164 aegl~aL~d~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~a 233 (465)
++++ ...|.++++||||++||+.... ++++++.++ |.|+ .+.+..+||+++++++|+++..++..
T Consensus 162 aral-----~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (265)
T TIGR02769 162 ARAL-----AVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236 (265)
T ss_pred HHHH-----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHH
Confidence 9999 8899999999999999998644 455666554 8887 77788899999999999999999888
Q ss_pred eEE
Q 012357 234 HIK 236 (465)
Q Consensus 234 DIi 236 (465)
++.
T Consensus 237 ~~~ 239 (265)
T TIGR02769 237 QLL 239 (265)
T ss_pred HHc
Confidence 764
No 135
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.91 E-value=1.1e-24 Score=226.12 Aligned_cols=187 Identities=14% Similarity=0.074 Sum_probs=144.7
Q ss_pred eeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe----ecC-----------c
Q 012357 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY----NDS-----------S 105 (465)
Q Consensus 42 ~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~----~~~-----------~ 105 (465)
.+...||...+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.+||. ++. +
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Ge---i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGE---ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence 35567888999999999999999 99999999999999999999999 99999999996 221 1
Q ss_pred cccccccCCCCCCccchHHHHHHhhhcccccccc---ccccccccccCcc------cccc---ccchhhhhHhHHhhhhc
Q 012357 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGYR------TLEV---PSSRIVIIEGIYALSEK 173 (465)
Q Consensus 106 ~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~~------~~~l---~~qRVlIaegl~aL~d~ 173 (465)
+.++|+||++.+++..|+.+|+.+.......... ..-....+.++.. ...+ ..|||.|++++ .
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARAL-----a 180 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAF-----A 180 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-----h
Confidence 4699999999999999999999875321111000 0000111111111 1112 23999999999 8
Q ss_pred cCcceeeeeeeecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 174 LRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l~rrIl---rdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.+|.++++|||+++||+...+.+. +++.++ |.|+ ++.+.++||++++|.+|+++..|...++.
T Consensus 181 ~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 181 MDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999998765554 555554 8888 77888999999999999999999887774
No 136
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.5e-24 Score=201.34 Aligned_cols=166 Identities=14% Similarity=0.044 Sum_probs=134.9
Q ss_pred eeeeEeeeCc----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC---CCeeEEEECCeecC---ccccc
Q 012357 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDS---SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---P~sG~I~lDg~~~~---~~~ig 109 (465)
.+++++.|+. ..+++++||++++|+ +++|+||||||||||+++|+|+. |++|+|.+||.++. ++.++
T Consensus 6 ~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGT---LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EeeeEEEecCCCCceEeEEccEEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 4667777753 679999999999999 99999999999999999999974 68999999998752 35689
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCcc
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD 189 (465)
|++|++.+++..|+.+|+.+..... ..++ ...||+.|++++ ..+|.++++|||++++|
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~~------------~LSg-----Ge~qrv~la~al-----~~~p~vlllDEP~~~LD 140 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSALLR------------GLSV-----EQRKRLTIGVEL-----AAKPSILFLDEPTSGLD 140 (192)
T ss_pred EecccCccccCCcHHHHHHHHHHHh------------cCCH-----HHhHHHHHHHHH-----hcCCcEEEEeCCCcCCC
Confidence 9999999998899999998642100 1222 234899999999 88999999999999999
Q ss_pred HHHHHH---HHHHHHHcCCCH------HH-HHHHHhceEEEccC-cEEEecC
Q 012357 190 FDLVKR---VFRDIQRVGQEP------EE-IIHQISETVYPMYK-AFIEPDL 230 (465)
Q Consensus 190 ~~l~rr---Ilrdl~e~G~TI------~~-vi~~i~d~V~~m~~-G~I~~~g 230 (465)
+..... +++++.++|.|+ .+ .+..+||+++.|++ |+++..|
T Consensus 141 ~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 141 SQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 986554 445655568887 33 46789999999998 9987653
No 137
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.9e-24 Score=214.96 Aligned_cols=189 Identities=15% Similarity=0.178 Sum_probs=142.2
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------cccc
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------~~~i 108 (465)
.+++++.|+ ...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.+
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 4 TRDLKYSYPDGTEALKGINFKAEKGE---MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEeCCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 467888885 4679999999999999 99999999999999999999999 89999999998752 2458
Q ss_pred ccccCCCC-CCccchHHHHHHhhhccccccc---cccccccccccCc------ccccc---ccchhhhhHhHHhhhhccC
Q 012357 109 DGNFDDPR-LTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 109 g~vfQ~p~-l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
+|+||++. .+...++.+|+.+......... ...-....+..+. ....+ ..||+.|++++ ..+
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral-----~~~ 155 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGIL-----AMK 155 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHH-----hcC
Confidence 99999974 3334699999976421110000 0000001111111 01112 24999999999 899
Q ss_pred cceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
|.++++||||+++|+.....+ ++++.++|.|+ .+.+.++||++++|++|++...++..++.
T Consensus 156 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999876554 46665568888 67788899999999999999998877763
No 138
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.6e-24 Score=205.66 Aligned_cols=178 Identities=14% Similarity=0.092 Sum_probs=135.1
Q ss_pred eeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------ccccc
Q 012357 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (465)
Q Consensus 42 ~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----------~~~ig 109 (465)
+++++|+++.+ ++||++++ + ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-E---VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCCeee--CceEEEcc-e---eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 68888988766 99999999 9 99999999999999999999999 89999999997642 24689
Q ss_pred cccCCCCCCccchHHHHHHhhhcccccc-ccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCccee
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQ-VPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLID 179 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~-~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ld 179 (465)
|+||++.+++..|+.+|+.+........ ....-....+..+. ....+ ..||+.|++++ ..+|.++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~p~ll 153 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL-----AAQPELL 153 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHH-----hcCCCEE
Confidence 9999999998899999997643211000 00000001111111 11112 24999999999 8999999
Q ss_pred eeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 180 LRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 180 llDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
++||||+++|+...+. +++++.++ |.|+ .+.+..+||+++++.+|++...|
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999987554 45666555 8887 67788999999999999987653
No 139
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.91 E-value=2.4e-24 Score=199.81 Aligned_cols=152 Identities=16% Similarity=0.248 Sum_probs=126.8
Q ss_pred eeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
.+++++.|+. ..+++++||++++|+ +++|+||||||||||+++|+|+. |++|.|.++|.+.. ++.++
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGE---SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 3677888864 569999999999999 99999999999999999999999 89999999998653 35689
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCcc
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD 189 (465)
|+||++.+++ .|+.+|+ .++ ...||+.|++++ ..+|.++++||||+++|
T Consensus 80 ~~~q~~~~~~-~tv~~~l--------------------LS~-----G~~qrv~la~al-----~~~p~~lllDEPt~~LD 128 (173)
T cd03246 80 YLPQDDELFS-GSIAENI--------------------LSG-----GQRQRLGLARAL-----YGNPRILVLDEPNSHLD 128 (173)
T ss_pred EECCCCcccc-CcHHHHC--------------------cCH-----HHHHHHHHHHHH-----hcCCCEEEEECCccccC
Confidence 9999998877 4999887 112 123899999999 89999999999999999
Q ss_pred HHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 012357 190 FDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (465)
Q Consensus 190 ~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I 226 (465)
+.... +++++++++|.|+ .+.+ .+||++++|++|++
T Consensus 129 ~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 129 VEGERALNQAIAALKAAGATRIVIAHRPETL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEEECCCC
Confidence 98655 4556666668887 5556 47999999998853
No 140
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.6e-24 Score=210.25 Aligned_cols=187 Identities=11% Similarity=0.120 Sum_probs=142.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC----CCeeEEEECCeecC-------cccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDS-------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll----P~sG~I~lDg~~~~-------~~~i 108 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.+
T Consensus 5 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 5 TTNLNLFYGKKQALFDINMQIEQNK---ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred eeeeEEEECCEeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4678888888889999999999999 99999999999999999999996 48999999998753 3468
Q ss_pred ccccCCCCCCccchHHHHHHhhhccccc-c-ccccc---cccccccCc----------ccccc---ccchhhhhHhHHhh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGKAV-Q-VPIYD---FKSSSRIGY----------RTLEV---PSSRIVIIEGIYAL 170 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~~~-~-~p~~d---~~~~~~~~~----------~~~~l---~~qRVlIaegl~aL 170 (465)
+|+||++.+++ .|+.+|+.+....... . ..... ....+..+. ....+ ..||+.|++++
T Consensus 82 ~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral--- 157 (246)
T PRK14269 82 GMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL--- 157 (246)
T ss_pred EEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH---
Confidence 99999999887 6999999764211100 0 00000 000111111 11112 24999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.....+.+.+.+ +|.|+ .+.+..+||+++++++|++...+...++
T Consensus 158 --~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 158 --AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred --hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 899999999999999999876665544433 47777 6778899999999999999988887765
No 141
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.91 E-value=3.9e-24 Score=206.25 Aligned_cols=180 Identities=12% Similarity=0.130 Sum_probs=132.7
Q ss_pred eeeeEeeeCc----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 012357 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (465)
Q Consensus 40 ~~~ls~~~g~----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------- 104 (465)
.+++++.|+. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+..
T Consensus 9 ~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 9 VHHLKKSVGQGEHELSILTGVELVVKRGE---TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred EeeeEEEccCCCcceEEEeccEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 3556666653 469999999999999 99999999999999999999999 99999999998653
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhcccccccc---ccccccccccCc------ccccc---ccchhhhhHhHHhhh
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~ 171 (465)
++.++|+||++.+++..|+.+|+.+.........+ ..-....+..+. ....+ ..||+.|++++
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al---- 161 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAF---- 161 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHH----
Confidence 13689999999988888999999764211100000 000000111111 11112 24999999999
Q ss_pred hccCcceeeeeeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEe
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEP 228 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~ 228 (465)
..+|.++++||||+++|+.... +++++++++ |.|+ .+.+. +||+++++++|++.+
T Consensus 162 -~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 162 -NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQE 226 (228)
T ss_pred -hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 8899999999999999998654 445666544 7787 55564 599999999999864
No 142
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.3e-24 Score=209.26 Aligned_cols=186 Identities=18% Similarity=0.187 Sum_probs=139.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------P~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. |++|.|.++|.++.
T Consensus 9 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 85 (253)
T PRK14242 9 ARGLSFFYGDFQALHDISLEFEQNQ---VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVEL 85 (253)
T ss_pred EeeeEEEECCeeeecceeEEEeCCC---EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHH
Confidence 4677888877789999999999999 99999999999999999999985 37999999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccc-cc---cccccccccccC----------cccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV-QV---PIYDFKSSSRIG----------YRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~-~~---p~~d~~~~~~~~----------~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++ .|+.+|+.+....... .. ...-....+..+ .....+ ..||+.|++++
T Consensus 86 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 164 (253)
T PRK14242 86 RRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL 164 (253)
T ss_pred hhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 246899999998887 5999999764311100 00 000000001111 011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.....+ ++++. +|.|+ .+.+.++||+++++++|++...+...++
T Consensus 165 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 165 -----AVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred -----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 889999999999999999865544 45553 36777 6778899999999999999888776655
No 143
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.1e-24 Score=215.22 Aligned_cols=188 Identities=16% Similarity=0.163 Sum_probs=141.5
Q ss_pred eeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
.+++++.|+. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.+||.++. ++.++
T Consensus 8 ~~~l~~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 8 VEHISFRYPDAATYALKDVSFSVYEGE---WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred EEEEEEEeCCCCccceeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 5677777753 579999999999999 99999999999999999999999 99999999998764 24689
Q ss_pred cccCCCC-CCccchHHHHHHhhhcccccccccc---ccccccccCc------ccccc---ccchhhhhHhHHhhhhccCc
Q 012357 110 GNFDDPR-LTDYDTLLENIRGLKEGKAVQVPIY---DFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 110 ~vfQ~p~-l~~~~tv~enL~~l~~~~~~~~p~~---d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p 176 (465)
|+||++. ++...|+.+|+.+............ -....+..+. ....+ ..||+.|++++ ..+|
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral-----~~~p 159 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVL-----ALQP 159 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHH-----HcCC
Confidence 9999984 6667899999986432111000000 0000011111 11112 24999999999 9999
Q ss_pred ceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 177 LIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.++++||||++||+..... ++++++++ |.|+ ++.+. .||+++++++|++...++..++.
T Consensus 160 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 160 DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999986554 45666655 8887 56665 59999999999999988877663
No 144
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.3e-24 Score=206.95 Aligned_cols=188 Identities=20% Similarity=0.221 Sum_probs=144.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+.+.+++++||++++|+ ++||+|+||||||||+++|+|+. |+.|.|.++|.+.. ++.++|++|
T Consensus 3 ~~~l~~~~~~~~il~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 3 LENVSKFYGGFVALDGVSLDIKEGE---FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred EEeEEEEeCCeeeeccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 4678888888889999999999999 99999999999999999999999 89999999998753 356899999
Q ss_pred CCCCCccchHHHHHHhhhccccccc---cccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+++..++.+|+.+......... ...-....+..+. ....+ ..||+.|++++ ..+|.+.++
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral-----~~~p~llll 154 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARAL-----VNEPKVLLL 154 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 9999988899999875422110000 0000000111111 01111 24999999999 889999999
Q ss_pred eeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|||++++|+..... ++++++++ |.|+ .+.+..+||+++++++|++...++..++
T Consensus 155 DEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 155 DEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 99999999986554 45666654 8888 6778899999999999999888765544
No 145
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.5e-24 Score=231.32 Aligned_cols=188 Identities=15% Similarity=0.138 Sum_probs=145.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++|
T Consensus 8 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 84 (510)
T PRK09700 8 MAGIGKSFGPVHALKSVNLTVYPGE---IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI 84 (510)
T ss_pred EeeeEEEcCCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEE
Confidence 4678888887889999999999999 99999999999999999999999 99999999998753 235899
Q ss_pred ccCCCCCCccchHHHHHHhhhccc----cc---ccccc-c--cccccccCc------ccccc---ccchhhhhHhHHhhh
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGK----AV---QVPIY-D--FKSSSRIGY------RTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~----~~---~~p~~-d--~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~ 171 (465)
+||++.+++..|+.+|+.+..... .. ..... . ....+..+. ....+ ..|||.||+++
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al---- 160 (510)
T PRK09700 85 IYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL---- 160 (510)
T ss_pred EeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH----
Confidence 999999999999999997632100 00 00000 0 000111111 11112 24999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||++||+..... ++++++++|.|+ .+.+..+||+++++++|+++..+...++
T Consensus 161 -~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 161 -MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred -hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 89999999999999999987554 456666678887 7888899999999999999888876664
No 146
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.3e-24 Score=213.50 Aligned_cols=187 Identities=16% Similarity=0.202 Sum_probs=139.6
Q ss_pred eeeeEeeeCc-----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~-----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++.
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGS---YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred EEEEEEEcCCCCccccceeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 4677888853 469999999999999 99999999999999999999999 99999999998653
Q ss_pred --ccccccccCCC--CCCccchHHHHHHhhhccccccccc---cccccccccCc-------ccccc---ccchhhhhHhH
Q 012357 105 --SRIIDGNFDDP--RLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY-------RTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 --~~~ig~vfQ~p--~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~-------~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++ .+++ .|+.+|+.+........... .-....+..+. ....+ ..||+.|++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 24589999997 3454 69999997643211000000 00000011111 01112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||++||+.....+ +++++++|.|+ .+.+..+||+++++.+|++...+...++
T Consensus 161 -----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 161 -----AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred -----HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 889999999999999999875544 45555568887 6778899999999999999988877665
No 147
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2e-24 Score=214.79 Aligned_cols=188 Identities=13% Similarity=0.165 Sum_probs=141.2
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------ccccc
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig 109 (465)
.+++++.|+ ...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 4 LENVSYSYPDGTPALENINLVIKKGE---YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEcCCCCceeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 467888884 5679999999999999 99999999999999999999999 89999999998753 24589
Q ss_pred cccCCCCC-CccchHHHHHHhhhcccccccc---ccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCc
Q 012357 110 GNFDDPRL-TDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 110 ~vfQ~p~l-~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p 176 (465)
|+||+|.. +...|+.+|+.+.......... ..-....+..+. ....+ ..||+.|++++ ..+|
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral-----~~~p 155 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGIL-----TMEP 155 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHH-----HcCC
Confidence 99999863 5567999999764321110000 000000111111 11112 24999999999 8999
Q ss_pred ceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 177 LIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.++++||||+++|+..... ++++++++|.|+ ++.+. +||+++++++|++...|+..++.
T Consensus 156 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999987554 455666668888 56664 69999999999999988877763
No 148
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.91 E-value=9.1e-25 Score=241.30 Aligned_cols=191 Identities=16% Similarity=0.183 Sum_probs=150.9
Q ss_pred eeeeeeeEeeeCcE--EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cc
Q 012357 37 VPIEDTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (465)
Q Consensus 37 ~~v~~~ls~~~g~~--~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~ 106 (465)
.--.++++|.|+.. .+|+|+||+|++|+ .+||+|+||||||||+|.|.|+. |+.|.|.+||+++. |+
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge---~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGE---KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 34568899999754 79999999999999 99999999999999999999999 99999999999865 67
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccccccc--------------cccccccccccCc--cccc-cccchhhhhHhHHh
Q 012357 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV--------------PIYDFKSSSRIGY--RTLE-VPSSRIVIIEGIYA 169 (465)
Q Consensus 107 ~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~--------------p~~d~~~~~~~~~--~~~~-l~~qRVlIaegl~a 169 (465)
.+||++|++.+|. .|++||+.........+. ..........++. ...+ ...||++|||++
T Consensus 548 ~ig~V~Q~~~Lf~-gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL-- 624 (709)
T COG2274 548 QVGYVLQDPFLFS-GSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL-- 624 (709)
T ss_pred heeEEcccchhhc-CcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh--
Confidence 8999999998775 699999987543221000 0000011111111 1111 134999999999
Q ss_pred hhhccCcceeeeeeeecCccHHHHHHHHHHHHHc--CCCH-----HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEP-----EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 170 L~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~--G~TI-----~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+...+.+...+.+- |+|. ....-+.||++++|++|+|+++|++.++.
T Consensus 625 ---l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 625 ---LSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred ---ccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHH
Confidence 9999999999999999999999999888764 6887 23344579999999999999999998875
No 149
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.91 E-value=3.7e-24 Score=208.15 Aligned_cols=188 Identities=17% Similarity=0.181 Sum_probs=145.2
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.++|+||
T Consensus 3 i~~l~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 3 IANISKRFGSFQALDDVNLEVPTGS---LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred EEEEEEEECCeeeeeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 4678888888899999999999999 99999999999999999999999 89999999998753 346899999
Q ss_pred CCCCCccchHHHHHHhhhccccccc---cccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+++..++.+|+.+......... ...-....+..+. ....+ ..||+.|++++ ..+|.+.++
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral-----~~~p~llll 154 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARAL-----AVEPQVLLL 154 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 9999988899999976432111000 0000000111111 01112 24999999999 889999999
Q ss_pred eeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|||++++|+.....+ ++++.++ |.|+ .+.+..+||+++.+.+|++.+.++..++
T Consensus 155 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 155 DEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence 999999999876554 4555554 7777 6778899999999999999988876665
No 150
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7e-24 Score=209.97 Aligned_cols=187 Identities=14% Similarity=0.093 Sum_probs=142.3
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC--------
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------- 104 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~-------- 104 (465)
-.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.++.
T Consensus 21 ~~~nl~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~ 97 (267)
T PRK14235 21 RARDVSVFYGEKQALFDVDLDIPEKT---VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVE 97 (267)
T ss_pred EEEeEEEEECCEEEEEEEEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHH
Confidence 46788999988889999999999999 99999999999999999999998 4 7999999998753
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhccccc--cccc---cccccccccCc----------ccccc---ccchhhhhH
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV--QVPI---YDFKSSSRIGY----------RTLEV---PSSRIVIIE 165 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~--~~p~---~d~~~~~~~~~----------~~~~l---~~qRVlIae 165 (465)
++.++|+||++.+++. ++.+|+.+....... .... .-....+..+. ....+ ..||+.|++
T Consensus 98 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 176 (267)
T PRK14235 98 LRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIAR 176 (267)
T ss_pred HhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 2458999999998874 999999864311100 0000 00000111111 11112 249999999
Q ss_pred hHHhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 166 gl~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
++ ..+|.++++||||+++|+...+.+. +++.+ +.|+ .+.+..+||+++++++|++...+...++
T Consensus 177 al-----~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 177 AI-----AVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HH-----HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99 8999999999999999998765544 55543 6676 6788899999999999999988876665
No 151
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.91 E-value=4.1e-24 Score=204.39 Aligned_cols=182 Identities=15% Similarity=0.157 Sum_probs=136.8
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+. .++++||++.+|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+||
T Consensus 3 ~~~l~~~~~~--~~~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 3 LDKVRYEYEH--LPMEFDLNVADGE---IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred EEeeeEEeCC--cceeeEEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 3567777753 4679999999999 99999999999999999999999 89999999998753 356899999
Q ss_pred CCCCCccchHHHHHHhhhccc-ccc--ccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGK-AVQ--VPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~-~~~--~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+++..|+.+|+.+..... ... ....-....+..+. ....+ ..||+.|++++ ..+|.+.++
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral-----~~~p~llll 152 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCL-----VRPNPILLL 152 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 999998899999997532111 000 00000001111111 11112 24999999999 889999999
Q ss_pred eeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCC
Q 012357 182 VSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (465)
Q Consensus 182 DEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~ 231 (465)
||||+++|+..... +++++.++ |.|+ .+.+.++||+++.|++|++.+.|+
T Consensus 153 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 153 DEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999987554 44555544 7777 677788999999999999988764
No 152
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.91 E-value=6.6e-24 Score=200.61 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=135.6
Q ss_pred eeeeEeeeCc------EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC---CCeeEEEECCeecC----cc
Q 012357 40 EDTLSFEKGF------FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDS----SR 106 (465)
Q Consensus 40 ~~~ls~~~g~------~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---P~sG~I~lDg~~~~----~~ 106 (465)
.+++++.|+. ..+++++||++++|+ +++|+||||||||||+++|+|+. |.+|.|.+||.+.. ++
T Consensus 6 ~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge---~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 6 FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGE---LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEeeEEEEecCCCcccccceecceEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 5678888864 679999999999999 99999999999999999999997 57999999998763 45
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeec
Q 012357 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (465)
Q Consensus 107 ~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts 186 (465)
.++|+||++.+++..|+.+|+.+..... ..++ ...||+.|++++ ..+|.+.++|||++
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~~------------~LS~-----G~~qrv~laral-----~~~p~illlDEP~~ 140 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKLR------------GLSG-----GERKRVSIALEL-----VSNPSLLFLDEPTS 140 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHhc------------cCCH-----HHHHHHHHHHHH-----HcCCCEEEEeCCCc
Confidence 6899999999998899999997643100 1112 234899999999 88999999999999
Q ss_pred CccHHHHHHH---HHHHHHcCCCH------H-HHHHHHhceEEEccCcEEEec
Q 012357 187 GVHFDLVKRV---FRDIQRVGQEP------E-EIIHQISETVYPMYKAFIEPD 229 (465)
Q Consensus 187 ~LD~~l~rrI---lrdl~e~G~TI------~-~vi~~i~d~V~~m~~G~I~~~ 229 (465)
++|+...+.+ ++++.++|.|+ . ..+.++||+++++++|++...
T Consensus 141 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 141 GLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 9999865544 45555568887 3 367789999999999998654
No 153
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.91 E-value=6.3e-24 Score=208.95 Aligned_cols=188 Identities=16% Similarity=0.152 Sum_probs=139.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee-----cC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN-----DS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~-----~~--------- 104 (465)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+ +.
T Consensus 9 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~ 85 (258)
T PRK11701 9 VRGLTKLYGPRKGCRDVSFDLYPGE---VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR 85 (258)
T ss_pred EeeeEEEcCCceeeeeeeEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHH
Confidence 4677888877789999999999999 99999999999999999999999 999999999986 42
Q ss_pred --ccccccccCCCC--CCccchHHHHHHhhhc--ccc----cccccc----cccccc-ccCcccccc---ccchhhhhHh
Q 012357 105 --SRIIDGNFDDPR--LTDYDTLLENIRGLKE--GKA----VQVPIY----DFKSSS-RIGYRTLEV---PSSRIVIIEG 166 (465)
Q Consensus 105 --~~~ig~vfQ~p~--l~~~~tv~enL~~l~~--~~~----~~~p~~----d~~~~~-~~~~~~~~l---~~qRVlIaeg 166 (465)
++.++|+||++. ++...++.+|+.+... +.. ...... .+.... ........+ ..||+.||++
T Consensus 86 ~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lara 165 (258)
T PRK11701 86 LLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARN 165 (258)
T ss_pred HhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHH
Confidence 235899999984 4555677888754211 100 000000 000000 001011112 2499999999
Q ss_pred HHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 167 l~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+ ...|.++++||||+++|+.....+ ++++.++ |.|+ .+.+..+||+++++++|++++.+...++
T Consensus 166 l-----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 166 L-----VTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred H-----hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9 889999999999999999876554 4555554 7787 7788889999999999999998887766
No 154
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.9e-24 Score=208.28 Aligned_cols=188 Identities=15% Similarity=0.153 Sum_probs=142.8
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCC------CeeEEEECCeecC--------
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS-------- 104 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP------~sG~I~lDg~~~~-------- 104 (465)
-.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+++ ++|.|.++|.++.
T Consensus 6 ~~~nl~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 6 KLEQLNVHFGKNHAVKDVSMDFPENS---VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred EEEEEEEEeCCeeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 35678888888889999999999999 999999999999999999999972 5899999998753
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhcc-ccccc---cccccccccccC----------cccccc---ccchhhhhHh
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEG-KAVQV---PIYDFKSSSRIG----------YRTLEV---PSSRIVIIEG 166 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~~-~~~~~---p~~d~~~~~~~~----------~~~~~l---~~qRVlIaeg 166 (465)
++.++|+||++.+++..|+.+|+...... ..... ........+..+ .....+ ..||+.|+++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara 162 (252)
T PRK14256 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIART 162 (252)
T ss_pred hhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHH
Confidence 34589999999999889999999753211 00000 000000001111 011112 2499999999
Q ss_pred HHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 167 l~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+ ..+|.++++|||++++|+.....+ ++++.+ +.|+ .+.+.++||++++|++|++...++..++
T Consensus 163 l-----~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 163 I-----AVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred H-----hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9 889999999999999999875544 455544 5676 6778899999999999999998887766
No 155
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.2e-24 Score=229.48 Aligned_cols=187 Identities=13% Similarity=0.101 Sum_probs=144.9
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------ccccccc
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~v 111 (465)
+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.++|+
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHS---IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 578888988889999999999999 99999999999999999999999 99999999998753 2468999
Q ss_pred cCCCCCCccchHHHHHHhhhccc-c--ccccc-cc--cccccccCc------ccccc---ccchhhhhHhHHhhhhccCc
Q 012357 112 FDDPRLTDYDTLLENIRGLKEGK-A--VQVPI-YD--FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l~~~~-~--~~~p~-~d--~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p 176 (465)
||++.+++..|+.+|+.+..... . ..... .. ....+..+. ....+ ..|||.||+++ ..+|
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al-----~~~p 153 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAF-----SYNA 153 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH-----HhCC
Confidence 99999888999999997642110 0 00000 00 000111111 01112 24999999999 8899
Q ss_pred ceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 177 LIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
.++++||||+++|+....++ ++++.+.|.|+ .+.+..+||++++|++|+++..++..++
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999876555 56666678887 6788899999999999999887766553
No 156
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.9e-24 Score=235.23 Aligned_cols=189 Identities=18% Similarity=0.170 Sum_probs=144.6
Q ss_pred eeeeEeeeC-----------cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---
Q 012357 40 EDTLSFEKG-----------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--- 104 (465)
Q Consensus 40 ~~~ls~~~g-----------~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--- 104 (465)
.+++++.|+ ...++++|||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++.
T Consensus 316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 316 VRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGE---TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred EeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 356777774 2579999999999999 99999999999999999999999 99999999998652
Q ss_pred -------ccccccccCCC--CCCccchHHHHHHhhhccccc----cccccccccccccCc-------ccccc---ccchh
Q 012357 105 -------SRIIDGNFDDP--RLTDYDTLLENIRGLKEGKAV----QVPIYDFKSSSRIGY-------RTLEV---PSSRI 161 (465)
Q Consensus 105 -------~~~ig~vfQ~p--~l~~~~tv~enL~~l~~~~~~----~~p~~d~~~~~~~~~-------~~~~l---~~qRV 161 (465)
++.++|+||++ .+++..++.+++.+....... .....-....+.++. ....+ ..|||
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv 472 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRI 472 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH
Confidence 24689999998 478889999999864211000 000000001111111 11112 23999
Q ss_pred hhhHhHHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCC
Q 012357 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (465)
Q Consensus 162 lIaegl~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~ 231 (465)
.||+++ ...|.++++||||++||+..... +++++.++ |.|+ ++.+.++||++++|++|++++.|+
T Consensus 473 ~iAraL-----~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~ 547 (623)
T PRK10261 473 CIARAL-----ALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGP 547 (623)
T ss_pred HHHHHH-----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 999999 89999999999999999987554 45666554 8888 788899999999999999999998
Q ss_pred cceEE
Q 012357 232 TAHIK 236 (465)
Q Consensus 232 ~aDIi 236 (465)
..+++
T Consensus 548 ~~~i~ 552 (623)
T PRK10261 548 RRAVF 552 (623)
T ss_pred HHHHh
Confidence 88873
No 157
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.1e-24 Score=229.57 Aligned_cols=188 Identities=14% Similarity=0.081 Sum_probs=144.8
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C--CeeEEEECCeecC--------cccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS--------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P--~sG~I~lDg~~~~--------~~~i 108 (465)
.+++++.|+...++++|||++++|+ ++||+||||||||||+++|+|++ | ++|.|.++|.++. ++.+
T Consensus 8 ~~nl~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 84 (506)
T PRK13549 8 MKNITKTFGGVKALDNVSLKVRAGE---IVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGI 84 (506)
T ss_pred EeeeEEEeCCeEeecceeEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCe
Confidence 4678888888889999999999999 99999999999999999999999 5 6999999998753 2458
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc---cccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhc
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGK---AVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEK 173 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~---~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~ 173 (465)
+|+||++.+++..|+.+|+.+..... ...... .-....+.++. ....+ ..||+.||+++ .
T Consensus 85 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al-----~ 159 (506)
T PRK13549 85 AIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKAL-----N 159 (506)
T ss_pred EEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH-----h
Confidence 99999999999999999998753211 000000 00001111111 11112 24999999999 8
Q ss_pred cCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 174 LRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
.+|.++++||||++||+..... +++++.++|.|+ .+.+.++||+++++++|+++..+...++
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999986554 456666668887 7888899999999999999888876554
No 158
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=1.7e-24 Score=214.18 Aligned_cols=182 Identities=16% Similarity=0.168 Sum_probs=144.7
Q ss_pred eCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------ccccccccCC
Q 012357 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDD 114 (465)
Q Consensus 47 ~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----------~~~ig~vfQ~ 114 (465)
.|....++++||+++.|+ |+.|.|-||||||||+|+|+++. |++|.|.+||.++. +++++|+||+
T Consensus 38 tg~vvGv~~~sl~v~~Ge---IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~ 114 (386)
T COG4175 38 TGLVVGVNDASLDVEEGE---IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQS 114 (386)
T ss_pred hCcEEeeccceeeecCCe---EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhh
Confidence 466778999999999999 99999999999999999999999 99999999999764 4679999999
Q ss_pred CCCCccchHHHHHHhhhcccccccc---ccccccccccCcc------ccccc---cchhhhhHhHHhhhhccCcceeeee
Q 012357 115 PRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGYR------TLEVP---SSRIVIIEGIYALSEKLRPLIDLRV 182 (465)
Q Consensus 115 p~l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~~------~~~l~---~qRVlIaegl~aL~d~~~p~LdllD 182 (465)
+.++|+.||.+|+.+..+-..+... .......+.++.. ...++ .|||.+|||+ +.+|.+++.|
T Consensus 115 FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAl-----a~~~~IlLMD 189 (386)
T COG4175 115 FALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARAL-----ANDPDILLMD 189 (386)
T ss_pred hccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHH-----ccCCCEEEec
Confidence 9999999999999997643222111 0111111222211 11111 3999999999 9999999999
Q ss_pred eeecCccHHHHHHHH---HHHH-HcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 183 SVTGGVHFDLVKRVF---RDIQ-RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 183 Epts~LD~~l~rrIl---rdl~-e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
||.|+|||-...++. .++. +-++|| .+.+-++.||+..|.+|+|+..|.+.+|+
T Consensus 190 EaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 190 EAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHH
Confidence 999999996544443 2333 338888 78889999999999999999999999985
No 159
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.91 E-value=5.7e-24 Score=198.04 Aligned_cols=158 Identities=20% Similarity=0.153 Sum_probs=128.7
Q ss_pred eeeeEeeeCcE--EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccc
Q 012357 40 EDTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~--~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~ 110 (465)
.+++++.|+.. .+++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.++|.+.. ++.++|
T Consensus 3 ~~~~~~~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNLSLELKQGE---KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred EEEEEEEeCCCCccceEEEEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 35778887653 79999999999999 99999999999999999999999 89999999998643 356899
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccH
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~ 190 (465)
+||++.+++ .++.+|+ ....++ ...||+.|++++ ..+|.++++||||+++|+
T Consensus 80 ~~q~~~~~~-~tv~~~i-----------------~~~LS~-----G~~qrv~laral-----~~~p~~lllDEP~~~LD~ 131 (178)
T cd03247 80 LNQRPYLFD-TTLRNNL-----------------GRRFSG-----GERQRLALARIL-----LQDAPIVLLDEPTVGLDP 131 (178)
T ss_pred EccCCeeec-ccHHHhh-----------------cccCCH-----HHHHHHHHHHHH-----hcCCCEEEEECCcccCCH
Confidence 999998876 6898887 111112 234899999999 899999999999999999
Q ss_pred HHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEec
Q 012357 191 DLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPD 229 (465)
Q Consensus 191 ~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~ 229 (465)
.....+.+.+.+ +|.|+ .+.+. .||+++.|.+|++.+.
T Consensus 132 ~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~ 177 (178)
T cd03247 132 ITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIMQ 177 (178)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEec
Confidence 876655544432 47776 55565 6999999999998764
No 160
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.2e-24 Score=209.88 Aligned_cols=186 Identities=18% Similarity=0.137 Sum_probs=140.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------P~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++.
T Consensus 16 ~~~l~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~ 92 (260)
T PRK10744 16 VRNLNFYYGKFHALKNINLDIAKNQ---VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALL 92 (260)
T ss_pred EEEEEEEeCCeEEeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHH
Confidence 4678888887789999999999999 99999999999999999999997 26999999998752
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccc-ccccccc---ccccccccC----------cccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGK-AVQVPIY---DFKSSSRIG----------YRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~-~~~~p~~---d~~~~~~~~----------~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++ .|+.+|+.+..... ....... -....+..+ .....+ ..||+.|++++
T Consensus 93 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 171 (260)
T PRK10744 93 RAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGI 171 (260)
T ss_pred hcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 346899999998887 79999997643211 0000000 000001111 011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.....+. +++. ++.|+ .+.+..+||+++++++|++...+...++
T Consensus 172 -----~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 172 -----AIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred -----HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8999999999999999998766554 4443 36676 6778899999999999999998877665
No 161
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.8e-24 Score=207.13 Aligned_cols=186 Identities=17% Similarity=0.122 Sum_probs=140.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC---C---CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---P---~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. | ++|.|.++|.+..
T Consensus 8 ~~~l~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 8 VSDLSVYYNKKKALNSVSLDFYPNE---ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred EEeeEEEECCeeeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence 4678888887889999999999999 99999999999999999999983 5 4899999998652
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccccc-ccccc---ccccccC----------cccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV-PIYDF---KSSSRIG----------YRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~-p~~d~---~~~~~~~----------~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++ .|+.+|+.+......... ..... ...+..+ .....+ ..||+.|++++
T Consensus 85 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14239 85 RKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL 163 (252)
T ss_pred hhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 346899999998887 799999986431110000 00000 0001111 011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.....+. +++.+ +.|+ .+.+.++||++++|++|++...+...++
T Consensus 164 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 164 -----ATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred -----hcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8899999999999999998765554 44443 5676 6778899999999999999998887765
No 162
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.91 E-value=2.7e-24 Score=226.78 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=148.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.||..+||++|||++.+|+ +.|++|.||||||||+|+|+|.. |++|+|.+||.... ..-|.+
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GE---V~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGE---VHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eecceEEcCCceeeccceeEEeCce---EEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEE
Confidence 5789999999999999999999999 99999999999999999999999 99999999998754 245889
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccccccccc--------cccccCcc--------cccc-ccchhhhhHhHHhhhhc
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFK--------SSSRIGYR--------TLEV-PSSRIVIIEGIYALSEK 173 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~--------~~~~~~~~--------~~~l-~~qRVlIaegl~aL~d~ 173 (465)
++|++++++.+||.+|+......... ....|+. ...+++.. .++. ..|-|.||+|+ .
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~-~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl-----~ 161 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRR-FGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARAL-----S 161 (500)
T ss_pred EeechhccCCccHHHHhhcccccccC-CCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHH-----h
Confidence 99999999999999999865432110 1111111 11111110 1111 23899999999 8
Q ss_pred cCcceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCC
Q 012357 174 LRPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~ 231 (465)
..+.++++||||++|+..... +++|+++++|.++ ++.+.++||++.+|.+|+.+.+.+
T Consensus 162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 899999999999999998655 4568888999998 899999999999999999988776
No 163
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.1e-24 Score=206.69 Aligned_cols=187 Identities=14% Similarity=0.114 Sum_probs=141.1
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCC------CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP------~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+++ .+|.|.++|.+..
T Consensus 7 ~~~l~~~~~~~~~l~~~sl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 7 AKDVHLSYGNYEALHGISLDFEEKE---LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred EEeeEEEECCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence 5788888888889999999999999 999999999999999999999982 6999999998652
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhcccccccc----ccccccccccCc----------ccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP----IYDFKSSSRIGY----------RTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p----~~d~~~~~~~~~----------~~~~l---~~qRVlIaegl 167 (465)
++.++|++|++.+++ .|+.+|+.+.........+ ..-....+..+. ....+ ..||+.|++++
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral 162 (251)
T PRK14251 84 RKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL 162 (251)
T ss_pred hccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence 345899999998886 6999999764321100000 000000000110 11112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.+.++|||++++|+...+.+.+-+.+ ++.|+ .+.+.++||++++|++|++...++..++
T Consensus 163 -----~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 163 -----AVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred -----hcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 889999999999999999876655433332 36776 6778899999999999999998887765
No 164
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.3e-24 Score=201.43 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=152.3
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccccccc
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNF 112 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~vf 112 (465)
+|+|++..++.++++|||++.+|| +.+|+||||||||||++.|+|.+ |++|++.++|.+.. .+..+..+
T Consensus 5 ~nls~~~~Gr~ll~~vsl~~~pGe---v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlp 81 (259)
T COG4559 5 ENLSYSLAGRRLLDGVSLDLRPGE---VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLP 81 (259)
T ss_pred eeeEEEeecceeccCcceeccCCc---EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcc
Confidence 678999999999999999999999 99999999999999999999999 99999999999764 24567899
Q ss_pred CCCCCCccchHHHHHHhhhccc-cccccccccc----cc---cccCc-----cccc-cccchhhhhHhHHhhhh-ccCcc
Q 012357 113 DDPRLTDYDTLLENIRGLKEGK-AVQVPIYDFK----SS---SRIGY-----RTLE-VPSSRIVIIEGIYALSE-KLRPL 177 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~-~~~~p~~d~~----~~---~~~~~-----~~~~-l~~qRVlIaegl~aL~d-~~~p~ 177 (465)
|+..+-...++.+.+.+.+... .-..+..+.. .. +..+. ..++ .+.|||-+++.+.-+++ ...+.
T Consensus 82 Q~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r 161 (259)
T COG4559 82 QNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGR 161 (259)
T ss_pred cCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCc
Confidence 9987766679999999865322 1111111110 00 11111 1111 13499999999988884 56677
Q ss_pred eeeeeeeecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 178 IDLRVSVTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 178 LdllDEpts~LD~~l---~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
++++||||+++|+.. +.++.|++..+|..+ .+...+|||+++.|++|+++..|.+.|++
T Consensus 162 ~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 162 WLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 999999999999985 456778998888766 78899999999999999999999988875
No 165
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.9e-24 Score=207.29 Aligned_cols=186 Identities=14% Similarity=0.118 Sum_probs=141.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|+. | .+|.|.++|.++.
T Consensus 7 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (251)
T PRK14270 7 SKNLNLWYGEKQALNDINLPIYENK---ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVEL 83 (251)
T ss_pred EEEeEEEECCeeeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHH
Confidence 5678888877789999999999999 99999999999999999999997 5 6899999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccc-cccc---cccccccccC----------cccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV-QVPI---YDFKSSSRIG----------YRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~-~~p~---~d~~~~~~~~----------~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++ .|+.+|+.+....... .... .-....+..+ .....+ ..||+.|++++
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 162 (251)
T PRK14270 84 RKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI 162 (251)
T ss_pred HhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 245899999999887 8999999864321110 0000 0000011111 011112 23999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+...+.+ ++++.+ +.|+ .+.+.++||+++++++|++...++..++
T Consensus 163 -----~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 163 -----AVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred -----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 889999999999999999876554 455544 5666 6778899999999999999988887765
No 166
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.91 E-value=7e-24 Score=220.34 Aligned_cols=182 Identities=15% Similarity=0.132 Sum_probs=147.0
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------ccccc
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIID 109 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig 109 (465)
-..++++.|+...|.++|||++.+|+ |-+|+|.||||||||+++|.|++ |++|+|.+||+... +..||
T Consensus 6 ~~~~itK~f~~~~And~V~l~v~~Ge---IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 6 EMRGITKRFPGVVANDDVSLSVKKGE---IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred EEeccEEEcCCEEecCceeeeecCCc---EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 34678889999999999999999999 99999999999999999999999 99999999999754 34699
Q ss_pred cccCCCCCCccchHHHHHHhhhcccc---ccc-----------ccccccc--ccccCcccccc-ccchhhhhHhHHhhhh
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKA---VQV-----------PIYDFKS--SSRIGYRTLEV-PSSRIVIIEGIYALSE 172 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~---~~~-----------p~~d~~~--~~~~~~~~~~l-~~qRVlIaegl~aL~d 172 (465)
|++|||.+++..|+.|||........ ... ..|.+.. ...+ ..+++ ..|||=|+.++
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V--~dLsVG~qQRVEIlKaL----- 155 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV--ADLSVGEQQRVEILKAL----- 155 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee--ecCCcchhHHHHHHHHH-----
Confidence 99999999999999999987643211 000 0111111 1111 11222 35999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
..++.++++||||+-|-|..+.++ ++.+.+.|.|| ...+.++||++-++..|+++-+.
T Consensus 156 yr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 156 YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 789999999999999999976655 57888899999 78899999999999999975443
No 167
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.91 E-value=7.1e-24 Score=198.20 Aligned_cols=154 Identities=21% Similarity=0.263 Sum_probs=127.1
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------ccccccc
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~v 111 (465)
+++++.| +++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.++|.+.. ++.++|+
T Consensus 8 ~~l~~~~----~l~~vs~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (182)
T cd03215 8 RGLSVKG----AVRDVSFEVRAGE---IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYV 80 (182)
T ss_pred eccEEEe----eecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEe
Confidence 3455555 8999999999999 99999999999999999999999 89999999998653 2468999
Q ss_pred cCCC---CCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCc
Q 012357 112 FDDP---RLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGV 188 (465)
Q Consensus 112 fQ~p---~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~L 188 (465)
||++ .+++..|+.+|+..... .++ ...||+.|++++ ..+|.++++|||++++
T Consensus 81 ~q~~~~~~~~~~~t~~e~l~~~~~---------------LS~-----G~~qrl~la~al-----~~~p~llllDEP~~~L 135 (182)
T cd03215 81 PEDRKREGLVLDLSVAENIALSSL---------------LSG-----GNQQKVVLARWL-----ARDPRVLILDEPTRGV 135 (182)
T ss_pred cCCcccCcccCCCcHHHHHHHHhh---------------cCH-----HHHHHHHHHHHH-----ccCCCEEEECCCCcCC
Confidence 9985 46777899999976421 122 124899999999 8999999999999999
Q ss_pred cHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 012357 189 HFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (465)
Q Consensus 189 D~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I 226 (465)
|+...+. +++++.++|.|+ .+.+..+||+++++++|++
T Consensus 136 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 136 DVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9986554 456666668787 6788899999999998863
No 168
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.3e-24 Score=206.17 Aligned_cols=186 Identities=15% Similarity=0.146 Sum_probs=140.0
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+... .++||++.+|+ ++||+|+||||||||+++|+|+. |++|.|.++|.+.. ++.++|+||
T Consensus 4 ~~~l~~~~~~~~--~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 4 LTDITWLYHHLP--MRFDLTVERGE---RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred EEEEEEEECCcc--ceeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 456777776543 38999999999 99999999999999999999999 89999999998753 246899999
Q ss_pred CCCCCccchHHHHHHhhhccc-ccc-c-cccccccccccCcc------cccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGK-AVQ-V-PIYDFKSSSRIGYR------TLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~-~~~-~-p~~d~~~~~~~~~~------~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+++..|+.+|+.+..... ... . ...-....+..+.. ...+ ..||+.|++++ ...|.+.++
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p~lllL 153 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCL-----VREQPILLL 153 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 999998899999997642111 000 0 00000011111111 1112 24999999999 899999999
Q ss_pred eeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|||++++|+.... ++++++.++ |.|+ .+.+.++||+++.+.+|++...++..++
T Consensus 154 DEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 217 (232)
T PRK10771 154 DEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL 217 (232)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999998654 445666543 7787 6778899999999999999988877665
No 169
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.9e-24 Score=207.10 Aligned_cols=187 Identities=16% Similarity=0.144 Sum_probs=141.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CC-----eeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~-----sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |+ +|.|.++|.++.
T Consensus 7 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 7 AQDVNIYYGDKQAVKNVNLDVQRGT---VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EeeeEEEECCEEeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 4678888887889999999999999 99999999999999999999998 64 799999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhcccccccc----cc------ccccc----cccCcccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP----IY------DFKSS----SRIGYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p----~~------d~~~~----~~~~~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++..|+.+|+............ .. ..... .........+ ..||+.|++++
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL 163 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 23589999999999889999999764321100000 00 00000 0001001112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++|||++++|+.....+. ++++ ++.|+ .+.+..+||++++|.+|++...++..++
T Consensus 164 -----~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 164 -----AVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred -----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8999999999999999998755544 5554 36776 6778889999999999999998887766
No 170
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.91 E-value=1.1e-23 Score=199.83 Aligned_cols=164 Identities=16% Similarity=0.210 Sum_probs=135.0
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc--C-CCeeEEEECCeecC--------cccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDS--------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl--l-P~sG~I~lDg~~~~--------~~~i 108 (465)
.+++++.|+...+++++||++.+|+ +++|+|+||||||||+++|+|+ . |++|.|.+||.++. +..+
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 3 IKDLHVSVGGKEILKGVNLTIKKGE---VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred EEEEEEEeCCEEeeeccceEECCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 4678888887889999999999999 9999999999999999999999 5 89999999998753 1248
Q ss_pred ccccCCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCc
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGV 188 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~L 188 (465)
+|+||++.+++..++.+++... ....++ ...||+.+++++ ..+|.+.++||||+++
T Consensus 80 ~~v~q~~~~~~~~~~~~~l~~~--------------~~~LS~-----G~~qrv~laral-----~~~p~illlDEPt~~L 135 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFLRYV--------------NEGFSG-----GEKKRNEILQLL-----LLEPDLAILDEPDSGL 135 (200)
T ss_pred EEeecChhhccCccHHHHHhhc--------------cccCCH-----HHHHHHHHHHHH-----hcCCCEEEEeCCCccC
Confidence 9999999988888888777110 011112 234899999999 8999999999999999
Q ss_pred cHHHHH---HHHHHHHHcCCCH------HHHHHH-HhceEEEccCcEEEecC
Q 012357 189 HFDLVK---RVFRDIQRVGQEP------EEIIHQ-ISETVYPMYKAFIEPDL 230 (465)
Q Consensus 189 D~~l~r---rIlrdl~e~G~TI------~~vi~~-i~d~V~~m~~G~I~~~g 230 (465)
|+.... ++++++.++|.|+ .+.+.. +||++++|++|++.+.+
T Consensus 136 D~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~ 187 (200)
T cd03217 136 DIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG 187 (200)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc
Confidence 998654 4456666668777 667777 79999999999998877
No 171
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.9e-24 Score=207.86 Aligned_cols=187 Identities=15% Similarity=0.107 Sum_probs=141.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. | ++|.|.++|.++.
T Consensus 7 i~~v~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 7 VKDLNIYYGSFHAVEDVNLNIEPRS---VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred EeeEEEEECCEeeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 4778888887889999999999999 99999999999999999999998 4 5999999998752
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccc-cccccc---cccccccC----------cccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV-QVPIYD---FKSSSRIG----------YRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~-~~p~~d---~~~~~~~~----------~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++..|+.+|+.+....... ...... ....+..+ .....+ ..||+.|++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 24689999999999889999999764321100 000000 00001111 011112 23999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEcc------CcEEEecCCc
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMY------KAFIEPDLQT 232 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~------~G~I~~~g~~ 232 (465)
..+|.++++||||+++|+.....+ ++++. ++.|+ .+.+.++||+++++. +|+++..++.
T Consensus 164 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 164 -----AVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDT 237 (258)
T ss_pred -----hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCH
Confidence 889999999999999999865544 45553 36676 677889999999996 7999888877
Q ss_pred ceE
Q 012357 233 AHI 235 (465)
Q Consensus 233 aDI 235 (465)
.++
T Consensus 238 ~~~ 240 (258)
T PRK14241 238 EKI 240 (258)
T ss_pred HHH
Confidence 765
No 172
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8e-24 Score=207.00 Aligned_cols=186 Identities=16% Similarity=0.153 Sum_probs=140.6
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|+. | ++|.|.++|.+..
T Consensus 6 ~~~l~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 6 IENFSAYYGEKKAVKNVTMKIFKNQ---ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred EEeeEEEeCCceeEeeeeEeecCCC---EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 4678888887889999999999999 99999999999999999999998 4 7999999998653
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhcccccccc-ccc---cccccccC----------cccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP-IYD---FKSSSRIG----------YRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p-~~d---~~~~~~~~----------~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++ .++.+|+.+.......... ..+ ....+..+ .....+ ..||+.|++++
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 346899999999887 7999999864321100000 000 00000101 011111 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.....+ ++++.+ +.|+ .+.+..+||+++++++|++...+...++
T Consensus 162 -----~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 162 -----AVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred -----hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 889999999999999999865544 445443 6676 6678899999999999999988876665
No 173
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=208.58 Aligned_cols=187 Identities=17% Similarity=0.157 Sum_probs=141.6
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC--------
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------- 104 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~-------- 104 (465)
..+++++.|+.+.+++++||++.+|+ ++||+|+||||||||+++|+|++ | ++|.|.+||.++.
T Consensus 22 ~~~nl~~~~~~~~il~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 98 (267)
T PRK14237 22 STKDLHVYYGKKEAIKGIDMQFEKNK---ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE 98 (267)
T ss_pred EEeeEEEEECCeeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence 35677888887889999999999999 99999999999999999999998 4 6999999998753
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhc--ccccc--cccc------ccccc----cccCcccccc---ccchhhhhHh
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKAVQ--VPIY------DFKSS----SRIGYRTLEV---PSSRIVIIEG 166 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~--~~~~~--~p~~------d~~~~----~~~~~~~~~l---~~qRVlIaeg 166 (465)
++.++|+||++.+++ .++.+|+.+... +.... .... ..... .........+ ..||+.|+++
T Consensus 99 ~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lara 177 (267)
T PRK14237 99 MRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARA 177 (267)
T ss_pred HhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 345899999998887 599999987432 11000 0000 00000 0001011112 2499999999
Q ss_pred HHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 167 l~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+ ..+|.++++|||++++|+.....+ ++++. ++.|+ .+.+..+||++++|++|++...++..++
T Consensus 178 l-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 178 I-----AVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred H-----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9 899999999999999999875544 45553 36676 6778899999999999999999887776
No 174
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.7e-24 Score=206.38 Aligned_cols=186 Identities=15% Similarity=0.173 Sum_probs=141.0
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. | ++|+|.++|.++.
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 6 VKDLDLFYGDFQALKKINLDIEENQ---VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred EEEEEEEECCceeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 5688888887789999999999999 99999999999999999999986 3 5899999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccc-cccccc---------cccc----cccCcccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV-QVPIYD---------FKSS----SRIGYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~-~~p~~d---------~~~~----~~~~~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++ .++.+|+.+....... ...... .... .........+ ..||+.|++++
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 345899999998887 8999999864321110 000000 0000 0001011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.....+ ++++. +|.|+ .+.+.++||+++++++|++...+...++
T Consensus 162 -----~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 162 -----AVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred -----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 899999999999999999876554 45553 37777 6778899999999999999988877665
No 175
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.1e-24 Score=212.71 Aligned_cols=188 Identities=14% Similarity=0.140 Sum_probs=140.3
Q ss_pred eeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCe---eEEEECCeecC-------cc
Q 012357 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI---AVITMDNYNDS-------SR 106 (465)
Q Consensus 40 ~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~s---G~I~lDg~~~~-------~~ 106 (465)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |+. |.|.++|.++. ++
T Consensus 8 i~~l~~~~~~~~~~~l~~v~l~i~~Ge---~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 8 FKHVSFTYPDSKKPALNDISFSIPRGS---WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred EEEEEEEcCCCCccceeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 4567777753 569999999999999 99999999999999999999999 876 89999998764 24
Q ss_pred ccccccCCCC-CCccchHHHHHHhhhcccccccccc---ccccccccCc------ccccc---ccchhhhhHhHHhhhhc
Q 012357 107 IIDGNFDDPR-LTDYDTLLENIRGLKEGKAVQVPIY---DFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEK 173 (465)
Q Consensus 107 ~ig~vfQ~p~-l~~~~tv~enL~~l~~~~~~~~p~~---d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~ 173 (465)
.++|+||++. .++..|+.+|+.+............ -....+.++. ....+ ..||+.|++++ .
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral-----~ 159 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL-----A 159 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH-----H
Confidence 6899999985 5667899999976422111000000 0001111111 11112 24999999999 8
Q ss_pred cCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 174 LRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.+|.++++||||+++|+..... +++++.++ |.|+ ++.+ .+||++++|++|++.+.++..++.
T Consensus 160 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999987554 44666554 8888 5556 479999999999999999887764
No 176
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=9.5e-24 Score=210.00 Aligned_cols=193 Identities=12% Similarity=0.093 Sum_probs=141.8
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CC--------eeEEEECCeecC------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS--------IAVITMDNYNDS------ 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~--------sG~I~lDg~~~~------ 104 (465)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ |+ +|.|.++|.+..
T Consensus 4 ~~nl~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 4 ADHLHVARRHRAILRDLSLRIEPGR---VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred EEEEEEEECCEeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 4678888888899999999999999 99999999999999999999999 77 899999998753
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhcccc---ccccc----cccccccccCcc------cccc---ccchhhhhHhH
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA---VQVPI----YDFKSSSRIGYR------TLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~---~~~p~----~d~~~~~~~~~~------~~~l---~~qRVlIaegl 167 (465)
++.++|+||++..+...|+.+|+.+...... ..... .-....+..+.. ...+ ..|||.|++++
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 160 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL 160 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 2347899999876556899999976421100 00000 000001111111 1112 23999999999
Q ss_pred Hhh---h-hccCcceeeeeeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcc
Q 012357 168 YAL---S-EKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (465)
Q Consensus 168 ~aL---~-d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~a 233 (465)
+.. + .+.+|.++++||||+++|+....++ ++++.++ |.|+ .+.+..+||+++++.+|+++..++..
T Consensus 161 ~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (272)
T PRK13547 161 AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPA 240 (272)
T ss_pred hccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 310 1 1258999999999999999875554 4666555 7887 67788899999999999998887766
Q ss_pred eE
Q 012357 234 HI 235 (465)
Q Consensus 234 DI 235 (465)
++
T Consensus 241 ~~ 242 (272)
T PRK13547 241 DV 242 (272)
T ss_pred HH
Confidence 55
No 177
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.2e-23 Score=208.51 Aligned_cols=186 Identities=13% Similarity=0.127 Sum_probs=138.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.++.
T Consensus 16 i~nl~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~ 92 (269)
T PRK14259 16 LQNVTISYGTFEAVKNVFCDIPRGK---VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEV 92 (269)
T ss_pred EEeEEEEECCEEEEcceEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHH
Confidence 4778888888889999999999999 99999999999999999999997 3 7999999998652
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhcccccc--ccccccccccc----------cCcccccc---ccchhhhhHhHHh
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ--VPIYDFKSSSR----------IGYRTLEV---PSSRIVIIEGIYA 169 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~--~p~~d~~~~~~----------~~~~~~~l---~~qRVlIaegl~a 169 (465)
++.++|+||++.+++ .|+.+|+.+........ .........+. .......+ ..||+.|++++
T Consensus 93 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral-- 169 (269)
T PRK14259 93 RRRIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTI-- 169 (269)
T ss_pred hhceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHH--
Confidence 246899999998887 49999998643211100 00000000000 01011112 24999999999
Q ss_pred hhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccC-----------cEEEec
Q 012357 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYK-----------AFIEPD 229 (465)
Q Consensus 170 L~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~-----------G~I~~~ 229 (465)
..+|.++++||||++||+.....+. +++. ++.|+ .+.+..+||++++|++ |++++.
T Consensus 170 ---~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~ 245 (269)
T PRK14259 170 ---AIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEF 245 (269)
T ss_pred ---hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEe
Confidence 8899999999999999998765554 4443 36676 7788999999999996 557777
Q ss_pred CCcceE
Q 012357 230 LQTAHI 235 (465)
Q Consensus 230 g~~aDI 235 (465)
|+..++
T Consensus 246 ~~~~~~ 251 (269)
T PRK14259 246 NETKKI 251 (269)
T ss_pred CCHHHH
Confidence 766665
No 178
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.8e-23 Score=209.23 Aligned_cols=187 Identities=17% Similarity=0.222 Sum_probs=140.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC---C---CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---P---~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|+. | ++|.|.++|.++.
T Consensus 42 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~ 118 (286)
T PRK14275 42 AKNFSIYYGEFEAVKKVNADILSKY---VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLL 118 (286)
T ss_pred EeeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHh
Confidence 5788999988889999999999999 99999999999999999999974 4 8999999998642
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhcccccc----cc--ccc----ccc----ccccCcccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ----VP--IYD----FKS----SSRIGYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~----~p--~~d----~~~----~~~~~~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++. ++.+|+.+........ .. ... +.. ..........+ ..||+.|++++
T Consensus 119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 197 (286)
T PRK14275 119 RKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTL 197 (286)
T ss_pred hhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHH
Confidence 2468999999988875 9999998643211000 00 000 000 00001011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||++||+.....+.+-+.+ .+.|+ .+.+..+||++++|++|++...++..++
T Consensus 198 -----~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 198 -----AVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred -----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 889999999999999999876655544332 25666 6778899999999999999988887765
No 179
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=7.7e-24 Score=204.82 Aligned_cols=186 Identities=20% Similarity=0.200 Sum_probs=137.9
Q ss_pred eeeeEeeeCcE--EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 40 EDTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~~--~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
.+++++.|+.. .+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRDISLDIPAGE---TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred EEEEEEEeCCCCccceeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 46778888654 79999999999999 99999999999999999999999 99999999998653 34689
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccc-cc------cc-----c--ccccccCcccccc---ccchhhhhHhHHhhhh
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQV-PI------YD-----F--KSSSRIGYRTLEV---PSSRIVIIEGIYALSE 172 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~~-p~------~d-----~--~~~~~~~~~~~~l---~~qRVlIaegl~aL~d 172 (465)
|+||++.+++ .|+.+|+.+......... .. .. + ............+ ..||+.|++++
T Consensus 80 ~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al----- 153 (234)
T cd03251 80 LVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL----- 153 (234)
T ss_pred EeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH-----
Confidence 9999998886 699999976432110000 00 00 0 0000001011112 24999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
...|.++++||||+++|+.....+.+.+.+ +|.|+ .+.+.. ||+++++++|++...++..++
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 223 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEEL 223 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHH
Confidence 899999999999999999976655544432 37777 556665 999999999999887766554
No 180
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=214.42 Aligned_cols=188 Identities=17% Similarity=0.181 Sum_probs=143.3
Q ss_pred eeeeeEeeeC--cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC------
Q 012357 39 IEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS------ 104 (465)
Q Consensus 39 v~~~ls~~~g--~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~------ 104 (465)
-.+++++.|. ...+|+++||++++|+ ++||+|+||||||||+++|+|+. + ++|.|.+||.++.
T Consensus 82 ~~~nls~~y~~~~~~~L~~is~~I~~Ge---~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 82 EIRNFNFWYMNRTKHVLHDLNLDIKRNK---VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred EEEeeEEEecCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 4578898884 4679999999999999 99999999999999999999998 3 5899999999863
Q ss_pred ---ccccccccCCCCCCccchHHHHHHhhhccccc-cccc---------ccccc----ccccCcccccc---ccchhhhh
Q 012357 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV-QVPI---------YDFKS----SSRIGYRTLEV---PSSRIVII 164 (465)
Q Consensus 105 ---~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~-~~p~---------~d~~~----~~~~~~~~~~l---~~qRVlIa 164 (465)
++.++|+||+|.++. .|+++|+.+....... .... ..... ....+.....+ ..||+.||
T Consensus 159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237 (329)
T ss_pred HhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence 356999999999885 7999999864311100 0000 00000 00111111112 24999999
Q ss_pred HhHHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 165 egl~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+|+ ..+|.++++||||+++|+.....+ ++.+.+ +.|+ ++.+.++||++++|++|++++.|...++
T Consensus 238 RAl-----~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l 311 (329)
T PRK14257 238 RAI-----ALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTI 311 (329)
T ss_pred HHH-----HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999 889999999999999999875554 444443 6777 7888899999999999999999999887
Q ss_pred E
Q 012357 236 K 236 (465)
Q Consensus 236 i 236 (465)
.
T Consensus 312 ~ 312 (329)
T PRK14257 312 F 312 (329)
T ss_pred h
Confidence 3
No 181
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.90 E-value=6.6e-24 Score=210.18 Aligned_cols=188 Identities=14% Similarity=0.214 Sum_probs=139.6
Q ss_pred eeeeEeeeC---------cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----
Q 012357 40 EDTLSFEKG---------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (465)
Q Consensus 40 ~~~ls~~~g---------~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----- 104 (465)
.+++++.|+ ..++++++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.+..
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 7 VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQ---TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred EeceEEEecCCCCcccccccceeeeeeEEecCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 456666664 2579999999999999 99999999999999999999999 99999999998753
Q ss_pred --ccccccccCCCC--CCccchHHHHHHhhhc-ccccccccc---ccccccccCc-------ccccc---ccchhhhhHh
Q 012357 105 --SRIIDGNFDDPR--LTDYDTLLENIRGLKE-GKAVQVPIY---DFKSSSRIGY-------RTLEV---PSSRIVIIEG 166 (465)
Q Consensus 105 --~~~ig~vfQ~p~--l~~~~tv~enL~~l~~-~~~~~~p~~---d~~~~~~~~~-------~~~~l---~~qRVlIaeg 166 (465)
++.++|+||++. +++..++.+++.+... ......... -....+.++. ....+ ..||+.|+++
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 163 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARA 163 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHH
Confidence 245899999975 4666788888865321 100000000 0001111111 01112 2499999999
Q ss_pred HHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 167 l~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+ ..+|.++++||||+++|+..... +++++.++ |.|+ .+.+..+||+++++.+|++...+...++
T Consensus 164 l-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 237 (267)
T PRK15112 164 L-----ILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADV 237 (267)
T ss_pred H-----HhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9 88999999999999999986554 45666554 8887 7788899999999999999988877765
No 182
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.1e-23 Score=204.47 Aligned_cols=187 Identities=17% Similarity=0.213 Sum_probs=142.8
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+.. +++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++++||
T Consensus 3 ~~~l~~~~~~~-~l~~is~~i~~Ge---~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 3 VENLSKDWKEF-KLKNVSLEVERGD---YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred eEeEEEEeCCc-eeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 46788888654 8999999999999 99999999999999999999999 99999999998753 346899999
Q ss_pred CCCCCccchHHHHHHhhhccccccccccc---cccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+++..++.+|+.+............. ....+..+. ....+ ..||+.|++++ ..+|.+.++
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral-----~~~p~llll 153 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARAL-----VVNPKILLL 153 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHH-----HcCCCEEEE
Confidence 99999889999999764321110000000 001111111 11112 24999999999 899999999
Q ss_pred eeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
||||+++|+.... ++++++..+ |.|+ ...+..+||++++|++|++.+.++..++
T Consensus 154 DEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 154 DEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999998655 445666554 8887 6778899999999999999888765544
No 183
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.6e-23 Score=206.10 Aligned_cols=186 Identities=13% Similarity=0.150 Sum_probs=140.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.++.
T Consensus 15 i~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 91 (259)
T PRK14274 15 INGMNLWYGQHHALKNINLSIPENE---VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91 (259)
T ss_pred EeeEEEEECCeeeEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHH
Confidence 4678888887889999999999999 99999999999999999999998 3 5899999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccc-cccccc---cccccccC----------cccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV-QVPIYD---FKSSSRIG----------YRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~-~~p~~d---~~~~~~~~----------~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++. ++.+|+.+....... ...... ....+..+ .....+ ..||+.|++++
T Consensus 92 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral 170 (259)
T PRK14274 92 RKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARAL 170 (259)
T ss_pred hhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 2458999999988874 999999764321110 000000 00001111 011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.....+ ++++.+ +.|+ .+.+.++||++++|.+|++...|...++
T Consensus 171 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 171 -----ATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred -----hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 889999999999999999865544 455543 6676 6778899999999999999999887776
No 184
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.90 E-value=4.3e-24 Score=237.14 Aligned_cols=189 Identities=18% Similarity=0.230 Sum_probs=149.0
Q ss_pred eeeeeeEeeeC--cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 38 PIEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 38 ~v~~~ls~~~g--~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
--.++++|.|+ ...+|+|+||++++|+ .+||+|+||||||||++.|+|+. |++|.|.+||.++. ++.
T Consensus 452 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge---~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGE---FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred EEEEEEEEEcCCCCccceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 35688999994 4679999999999999 99999999999999999999999 99999999999864 567
Q ss_pred cccccCCCCCCccchHHHHHHhhhcc--ccc-------ccc----ccccccccccCc--cccc-cccchhhhhHhHHhhh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEG--KAV-------QVP----IYDFKSSSRIGY--RTLE-VPSSRIVIIEGIYALS 171 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~--~~~-------~~p----~~d~~~~~~~~~--~~~~-l~~qRVlIaegl~aL~ 171 (465)
+++++|++.+|+ .|+++||...... ..+ ... .........++. ...+ ...||+.||||+
T Consensus 529 i~~v~Q~~~lf~-gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl---- 603 (686)
T TIGR03797 529 LGVVLQNGRLMS-GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL---- 603 (686)
T ss_pred cEEEccCCccCc-ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH----
Confidence 999999999886 6999999875320 000 000 000011111111 1111 134999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+...+++.+.+.+.+.|+ .+.+. .||+|++|++|++++.|++.+++
T Consensus 604 -l~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~-~~D~Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 604 -VRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIR-NADRIYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred -hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence 88999999999999999999999888887777787 55555 49999999999999999988874
No 185
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=205.54 Aligned_cols=186 Identities=13% Similarity=0.134 Sum_probs=141.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CC-----eeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~-----sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |. +|.|.++|.+..
T Consensus 7 ~~~l~~~~~~~~il~~~s~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 83 (251)
T PRK14249 7 IRGVNFFYHKHQVLKNINMDFPERQ---ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL 83 (251)
T ss_pred EEEEEEEECCeeEecceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence 4678888887889999999999999 99999999999999999999999 75 699999998652
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhc--ccccc--cc-ccc-----cccc----cccCcccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKAVQ--VP-IYD-----FKSS----SRIGYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~--~~~~~--~p-~~d-----~~~~----~~~~~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++. ++.+|+.+... +.... .. ... .... .........+ ..||+.|++++
T Consensus 84 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 162 (251)
T PRK14249 84 RKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162 (251)
T ss_pred hceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 3468999999998875 99999986432 11000 00 000 0000 0001011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.... ++++++. +|.|+ .+.+..+||+++++++|.+...++..++
T Consensus 163 -----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 163 -----AIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred -----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 8899999999999999998655 4455553 47777 6788899999999999999988887765
No 186
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=205.19 Aligned_cols=186 Identities=15% Similarity=0.162 Sum_probs=140.6
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC--------c
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------S 105 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~--------~ 105 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. | ++|.|.++|.++. +
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 6 IENLDLFYGENQALKSINLPIPARQ---VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred EeccEEEECCeeeeecceEEecCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 4678888888889999999999999 99999999999999999999998 5 4899999998652 2
Q ss_pred cccccccCCCCCCccchHHHHHHhhhcccccc-ccccc---cccccccC----------cccccc---ccchhhhhHhHH
Q 012357 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ-VPIYD---FKSSSRIG----------YRTLEV---PSSRIVIIEGIY 168 (465)
Q Consensus 106 ~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~-~p~~d---~~~~~~~~----------~~~~~l---~~qRVlIaegl~ 168 (465)
+.++|+||++.+++ .|+.+|+.+........ ..... ....+..+ .....+ ..|||.|++++
T Consensus 83 ~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral- 160 (249)
T PRK14253 83 IKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI- 160 (249)
T ss_pred hheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH-
Confidence 45899999999887 79999997642211100 00000 00000000 011112 24999999999
Q ss_pred hhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 169 ALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 169 aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+..... +++++.+ +.|+ .+.+..+||+++++.+|++...++..++
T Consensus 161 ----~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 161 ----AMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred ----HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 88999999999999999986554 4455544 5676 6788999999999999999988876665
No 187
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.7e-23 Score=207.82 Aligned_cols=187 Identities=14% Similarity=0.172 Sum_probs=142.0
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC--------
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS-------- 104 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------P~sG~I~lDg~~~~-------- 104 (465)
..+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++.
T Consensus 26 ~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 26 DTQNLNLWYGEDHALKNINLDIHENE---VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred EEeeeEEEECCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 45788999988889999999999999 99999999999999999999997 38999999998752
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhccccc-cccc-c---c-----c----ccccccCcccccc---ccchhhhhHh
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV-QVPI-Y---D-----F----KSSSRIGYRTLEV---PSSRIVIIEG 166 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~-~~p~-~---d-----~----~~~~~~~~~~~~l---~~qRVlIaeg 166 (465)
++.++|+||++.+++ .++.+|+.+....... .... . . + ............+ ..||+.|+++
T Consensus 103 ~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lara 181 (271)
T PRK14238 103 LRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARC 181 (271)
T ss_pred HhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 346899999998887 5999999864211000 0000 0 0 0 0000001011112 2499999999
Q ss_pred HHhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 167 l~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+ ..+|.++++||||+++|+.....+. +++.+ +.|+ .+.+..+||+++++++|++...+...++
T Consensus 182 L-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 182 L-----AIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred H-----HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9 8899999999999999999765554 45543 6776 6778899999999999999998887766
No 188
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.90 E-value=4.8e-24 Score=237.60 Aligned_cols=189 Identities=15% Similarity=0.107 Sum_probs=149.4
Q ss_pred eeeeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 38 PIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 38 ~v~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
--.++++|.|+. ..+|+|+||++++|+ .+||+|+||||||||++.|+|+. |++|.|.+||.++. ++.
T Consensus 478 I~~~~vsf~y~~~~~~vL~~isl~i~~Ge---~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 478 VELRNITFGYSPLEPPLIENFSLTLQPGQ---RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred EEEEEEEEecCCCCCCcccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 356889999963 679999999999999 99999999999999999999999 99999999998764 568
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccc---cc-------c----cccccccccccCc--cccc-cccchhhhhHhHHhh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKA---VQ-------V----PIYDFKSSSRIGY--RTLE-VPSSRIVIIEGIYAL 170 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~---~~-------~----p~~d~~~~~~~~~--~~~~-l~~qRVlIaegl~aL 170 (465)
++|++|++.+|+ .|+++||........ +. . ..........++. ...+ ...||+.|||++
T Consensus 555 i~~v~Q~~~lf~-gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARal--- 630 (710)
T TIGR03796 555 VAMVDQDIFLFE-GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARAL--- 630 (710)
T ss_pred eeEEecCChhhh-ccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHH---
Confidence 999999999885 699999986432110 00 0 0000011111111 1111 134999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+....++.+.+.+.++|+ .+.+. .||+|++|++|++++.|++.+++
T Consensus 631 --l~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~-~~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 631 --VRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIR-DCDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred --hhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEeCCEEEEecCHHHHH
Confidence 88999999999999999999999998888788888 55554 49999999999999999998874
No 189
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=7.1e-24 Score=212.25 Aligned_cols=188 Identities=15% Similarity=0.136 Sum_probs=138.5
Q ss_pred eeeeEeeeCcE-----EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFF-----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~-----~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+.. .+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++.
T Consensus 9 i~nl~~~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 9 LDNVSYTYAKKTPFEFKALNNTSLTFKKNK---VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred EEEEEEEeCCCCccccceeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 56777777643 59999999999999 99999999999999999999999 89999999998642
Q ss_pred ---ccccccccCCCCC-CccchHHHHHHhhhccccccccc-cc--cccccccCc-------ccccc---ccchhhhhHhH
Q 012357 105 ---SRIIDGNFDDPRL-TDYDTLLENIRGLKEGKAVQVPI-YD--FKSSSRIGY-------RTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ---~~~ig~vfQ~p~l-~~~~tv~enL~~l~~~~~~~~p~-~d--~~~~~~~~~-------~~~~l---~~qRVlIaegl 167 (465)
++.++|++|++.. +...|+.+|+.+........... .. ....+..+. ....+ ..||+.|++++
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral 165 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGII 165 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 2458999999742 22359999997643211000000 00 000111111 01112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.....+ ++++.+ .|.|+ .+.+.++||++++|++|++...+...++
T Consensus 166 -----~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 166 -----AMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred -----HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 889999999999999999875544 455554 38887 6778899999999999999988876665
No 190
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.90 E-value=4.2e-24 Score=232.28 Aligned_cols=217 Identities=17% Similarity=0.193 Sum_probs=162.8
Q ss_pred CCCCccccccccceeeeeccCc-ceeeceeeeeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHH
Q 012357 10 DSPRRRPGLLRDQVQLVKKKDS-DRYEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL 87 (465)
Q Consensus 10 ~~~~~~~~l~~~~~~l~~~~~~-k~y~~~~v~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~ 87 (465)
.+.+|...++.....+...... ......--.++++|.|+ ..++++|+||++++|+ .+||+|||||||||+++.|.
T Consensus 300 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge---~vaiVG~sGsGKSTl~~LL~ 376 (567)
T COG1132 300 AAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGE---KVAIVGPSGSGKSTLIKLLL 376 (567)
T ss_pred HHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCC---EEEEECCCCCCHHHHHHHHh
Confidence 3445666666654443333332 12222346789999998 6899999999999999 99999999999999999999
Q ss_pred hcC-CCeeEEEECCeecC-------ccccccccCCCCCCccchHHHHHHhhhccc---cccc-----ccccc------cc
Q 012357 88 NFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGK---AVQV-----PIYDF------KS 145 (465)
Q Consensus 88 gll-P~sG~I~lDg~~~~-------~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~---~~~~-----p~~d~------~~ 145 (465)
++. |++|.|.+||.++. ++.+++++|++.+|+ .|+.+||.+..... .+.. ...++ ..
T Consensus 377 r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~ 455 (567)
T COG1132 377 RLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGY 455 (567)
T ss_pred ccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccc
Confidence 999 99999999999875 578999999999998 89999999875431 1100 00110 11
Q ss_pred ccccC--ccccc-cccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHH
Q 012357 146 SSRIG--YRTLE-VPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQI 214 (465)
Q Consensus 146 ~~~~~--~~~~~-l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i 214 (465)
...++ +...+ ...||+.|||++ ..+|.++++||||+++|......+.+.+.+ +|+|+ ...+..
T Consensus 456 dt~vge~G~~LSgGQrQrlaiARal-----l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~- 529 (567)
T COG1132 456 DTIVGERGVNLSGGQRQRLAIARAL-----LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN- 529 (567)
T ss_pred cceecCCCccCCHHHHHHHHHHHHH-----hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-
Confidence 11222 11122 234999999999 889999999999999999987777766642 46666 455555
Q ss_pred hceEEEccCcEEEecCCcceEE
Q 012357 215 SETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 215 ~d~V~~m~~G~I~~~g~~aDIi 236 (465)
||++++|++|++++.|++.++.
T Consensus 530 aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 530 ADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred CCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999885
No 191
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=207.49 Aligned_cols=187 Identities=16% Similarity=0.149 Sum_probs=140.6
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC--------
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS-------- 104 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------P~sG~I~lDg~~~~-------- 104 (465)
-.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. |++|.|.++|.++.
T Consensus 23 ~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (268)
T PRK14248 23 EVKDLSIYYGEKRAVNDISMDIEKHA---VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99 (268)
T ss_pred EEEEEEEEeCCceeeeceEEEEcCCC---EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence 35788888888889999999999999 99999999999999999999974 47999999998753
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhccccccc-c-----cc---c-cccc----cccCcccccc---ccchhhhhHh
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV-P-----IY---D-FKSS----SRIGYRTLEV---PSSRIVIIEG 166 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~-p-----~~---d-~~~~----~~~~~~~~~l---~~qRVlIaeg 166 (465)
++.++|+||++.+++. ++.+|+.+......... . .. + +... .........+ ..||+.|+++
T Consensus 100 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lara 178 (268)
T PRK14248 100 LRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIART 178 (268)
T ss_pred HhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHH
Confidence 2468999999988874 99999976421110000 0 00 0 0000 0001011112 2499999999
Q ss_pred HHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 167 l~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+ ..+|.++++||||+++|+..... +++++.+ +.|+ .+.+.++||++++|++|.+...++..++
T Consensus 179 l-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 179 L-----AMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred H-----hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9 88999999999999999986554 4455543 6676 6778899999999999999988876665
No 192
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.90 E-value=1.4e-23 Score=224.99 Aligned_cols=187 Identities=11% Similarity=0.031 Sum_probs=143.8
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C--CeeEEEECCeecC--------cccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS--------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P--~sG~I~lDg~~~~--------~~~i 108 (465)
.+++++.|+...++++|||++++|+ ++||+||||||||||+++|+|++ | ++|.|.++|.++. ++.+
T Consensus 4 i~~l~~~~~~~~il~~isl~i~~Ge---~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 4 MKGIVKTFGGVKALDGIDLEVRPGE---CVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEeEEEEeCCeEeecceEEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 4678888888889999999999999 99999999999999999999998 5 6999999998753 2458
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc----ccccc---ccccccccccCcc-------cccc---ccchhhhhHhHHhhh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGK----AVQVP---IYDFKSSSRIGYR-------TLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~----~~~~p---~~d~~~~~~~~~~-------~~~l---~~qRVlIaegl~aL~ 171 (465)
+|+||++.+++..|+.+|+.+..... ..... ..-....+..+.. ...+ ..|||.||+++
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al---- 156 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKAL---- 156 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHH----
Confidence 99999999999999999997643210 00000 0000011111110 1112 24999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcce
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aD 234 (465)
..+|.++++||||++||+.....+ ++++.++|.|+ .+.+.++||++++|++|++...++..+
T Consensus 157 -~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 157 -NKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred -hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 889999999999999999875554 56666678887 678899999999999999987776543
No 193
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.90 E-value=8.8e-24 Score=200.39 Aligned_cols=172 Identities=16% Similarity=0.208 Sum_probs=128.1
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------cccc
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRII 108 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----------~~~i 108 (465)
+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|+|.++|.++. ++.+
T Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 2 KNISKKFGDKIILDDLNLTIEKGK---MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred cceEEEECCEEEEeceEEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 578888988889999999999999 99999999999999999999999 89999999998732 2468
Q ss_pred ccccCCCCCCccchHHHHHHhhhcccccccccc---ccccccccCc------ccccc---ccchhhhhHhHHhhhhccCc
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY---DFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~---d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p 176 (465)
+|++|++.+++..|+.+|+.+............ -....+..+. ....+ ..||+.|++++ ..+|
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral-----~~~p 153 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAI-----LKDP 153 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHH-----HcCC
Confidence 999999999988999999987432111000000 0001111111 11112 24999999999 8899
Q ss_pred ceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEc
Q 012357 177 LIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPM 221 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m 221 (465)
.++++||||+++|+.....+. +++.++|.|+ .+.+ .+||++++|
T Consensus 154 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 154 PLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 999999999999998765544 5555567776 4444 478887764
No 194
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1e-23 Score=209.20 Aligned_cols=187 Identities=16% Similarity=0.174 Sum_probs=138.4
Q ss_pred eeeeEeeeC--cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g--~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
.+++++.|+ ...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++
T Consensus 10 ~~nl~~~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 10 VENVSFSYPNSENNALKNVSFEINEGE---YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEeEEEEcCCCCccceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 567777774 4679999999999999 99999999999999999999999 89999999998753 34589
Q ss_pred cccCCCC-CCccchHHHHHHhhhcccccccccc---ccccccccCc------ccccc---ccchhhhhHhHHhhhhccCc
Q 012357 110 GNFDDPR-LTDYDTLLENIRGLKEGKAVQVPIY---DFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 110 ~vfQ~p~-l~~~~tv~enL~~l~~~~~~~~p~~---d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p 176 (465)
|+||++. .++..|+.+|+.+............ -....+..+. ....+ ..||+.|++++ ..+|
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral-----~~~p 161 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVL-----ALNP 161 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHH-----HcCC
Confidence 9999984 5667899999976432110000000 0000111111 11112 24999999999 8999
Q ss_pred ceeeeeeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 177 LIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
.++++|||+++||+.....+ ++++.++ |.|+ .+.+. +||++++|.+|++...++..++
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999875544 4555554 4777 44554 7999999999999888776554
No 195
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=204.98 Aligned_cols=186 Identities=17% Similarity=0.139 Sum_probs=140.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. | ++|.|.++|.++.
T Consensus 9 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (253)
T PRK14261 9 TKNLNLWYGEKHALYDITISIPKNR---VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVAL 85 (253)
T ss_pred EeeeEEEECCeeeeeeeEEEECCCc---EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhh
Confidence 4678888888889999999999999 99999999999999999999986 3 3899999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccc-cccccc---cccccc----------cCcccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV-QVPIYD---FKSSSR----------IGYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~-~~p~~d---~~~~~~----------~~~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++. |+.+|+.+....... ...... ....+. .......+ ..||+.|++++
T Consensus 86 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14261 86 RRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL 164 (253)
T ss_pred hceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence 2458999999998874 999999864321110 000000 000000 01011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.+.++|||++++|+.....+ ++.+.+ +.|+ .+.+..+||+++++++|++...++..++
T Consensus 165 -----~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 165 -----AVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred -----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 889999999999999999876554 455544 5676 6778889999999999999998887776
No 196
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=7.1e-24 Score=210.02 Aligned_cols=187 Identities=14% Similarity=0.122 Sum_probs=138.8
Q ss_pred eeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 10 i~~l~~~~~~~~~~~l~~isl~i~~Ge---~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 10 FKNVSFQYQSDASFTLKDVSFNIPKGQ---WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred EEEEEEEcCCCCCcceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 4667777754 459999999999999 99999999999999999999999 89999999998753 24689
Q ss_pred cccCCCC-CCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccCc
Q 012357 110 GNFDDPR-LTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 110 ~vfQ~p~-l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p 176 (465)
|+||++. .++..++.+|+.+........... .-....+..+. ....+ ..||+.|++++ ..+|
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral-----~~~p 161 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVL-----ALNP 161 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH-----HcCC
Confidence 9999985 566778888887643211100000 00000111110 11112 24999999999 8999
Q ss_pred ceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 177 LIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
.++++||||+++|+..... +++++.++ |.|+ .+.+.. ||+++++.+|++...++..++
T Consensus 162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHH
Confidence 9999999999999987554 45666554 7887 445555 999999999999998887766
No 197
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2e-23 Score=207.70 Aligned_cols=186 Identities=12% Similarity=0.125 Sum_probs=139.8
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|+. | .+|.|.++|.++.
T Consensus 23 ~~nl~~~~~~~~~l~~vs~~i~~Ge---~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~ 99 (274)
T PRK14265 23 VEGVKVFYGGFLALVDVHLKIPAKK---IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKL 99 (274)
T ss_pred EeeEEEEeCCeEEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHH
Confidence 4677888877789999999999999 99999999999999999999997 3 4899999998752
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhcccccc--ccc-----cc-ccc----ccccCcccccc---ccchhhhhHhHHh
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ--VPI-----YD-FKS----SSRIGYRTLEV---PSSRIVIIEGIYA 169 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~--~p~-----~d-~~~----~~~~~~~~~~l---~~qRVlIaegl~a 169 (465)
++.++|+||++.+++. ++.+|+.......... ... .. ... ..........+ ..|||.|++++
T Consensus 100 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL-- 176 (274)
T PRK14265 100 RRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAI-- 176 (274)
T ss_pred hhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHH--
Confidence 2468999999988874 9999997642111000 000 00 000 00011011112 24999999999
Q ss_pred hhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEcc---------CcEEEecCC
Q 012357 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMY---------KAFIEPDLQ 231 (465)
Q Consensus 170 L~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~---------~G~I~~~g~ 231 (465)
..+|.++++||||++||+.....+. +++.+ +.|+ .+.+.++||++++|+ +|+++..|+
T Consensus 177 ---~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~ 252 (274)
T PRK14265 177 ---AMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSP 252 (274)
T ss_pred ---hhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 8899999999999999998766554 44433 6666 678899999999998 799999888
Q ss_pred cceE
Q 012357 232 TAHI 235 (465)
Q Consensus 232 ~aDI 235 (465)
..++
T Consensus 253 ~~~~ 256 (274)
T PRK14265 253 TEQM 256 (274)
T ss_pred HHHH
Confidence 8877
No 198
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.90 E-value=9e-24 Score=232.35 Aligned_cols=189 Identities=15% Similarity=0.179 Sum_probs=143.0
Q ss_pred eeeeEeeeC----cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec-----------
Q 012357 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----------- 103 (465)
Q Consensus 40 ~~~ls~~~g----~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~----------- 103 (465)
.+++++.|+ ...++++|||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|..+
T Consensus 15 v~~l~~~y~~~~~~~~~l~~is~~v~~Ge---~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGE---TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred EeceEEEecCCCCceeEEEeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 455666664 3579999999999999 99999999999999999999999 8999999988522
Q ss_pred --C--------ccccccccCCC--CCCccchHHHHHHhhhccc-cccccc---cccccccccCc---------ccccc--
Q 012357 104 --S--------SRIIDGNFDDP--RLTDYDTLLENIRGLKEGK-AVQVPI---YDFKSSSRIGY---------RTLEV-- 156 (465)
Q Consensus 104 --~--------~~~ig~vfQ~p--~l~~~~tv~enL~~l~~~~-~~~~p~---~d~~~~~~~~~---------~~~~l-- 156 (465)
. ++.++|+||+| .+++..|+.+|+.+..... ...... .-....+.++. ....+
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSg 171 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSG 171 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCH
Confidence 0 13689999998 5778889999998743210 100000 00001111111 11112
Q ss_pred -ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHH---HHHHHHHHHHc-CCCH------HHHHHHHhceEEEccCcE
Q 012357 157 -PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL---VKRVFRDIQRV-GQEP------EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 157 -~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l---~rrIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~ 225 (465)
..|||.||+|+ ..+|.++++||||++||+.. +.+++++++++ |.|+ .+.+.++||+|++|++|+
T Consensus 172 Gq~QRv~iA~AL-----~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 172 GMRQRVMIAMAL-----SCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred HHHHHHHHHHHH-----hCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 23999999999 89999999999999999997 55566777655 8887 788899999999999999
Q ss_pred EEecCCcceEE
Q 012357 226 IEPDLQTAHIK 236 (465)
Q Consensus 226 I~~~g~~aDIi 236 (465)
+++.|+..++.
T Consensus 247 i~~~g~~~~~~ 257 (623)
T PRK10261 247 AVETGSVEQIF 257 (623)
T ss_pred ecccCCHHHhh
Confidence 99998887763
No 199
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.7e-23 Score=205.01 Aligned_cols=189 Identities=16% Similarity=0.150 Sum_probs=142.2
Q ss_pred eeeeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC------
Q 012357 37 VPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS------ 104 (465)
Q Consensus 37 ~~v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------P~sG~I~lDg~~~~------ 104 (465)
..-.+++++.|+...+++++||++.+|+ +++|+|+||||||||+++|+|+. |++|.|.++|.++.
T Consensus 5 ~~~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 5 HASVKNLNLWYGSKQILFDINLDIYKRE---VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEEeeeEEEEECCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 3446788899988899999999999999 99999999999999999999997 25999999998642
Q ss_pred ---ccccccccCCCCCCccchHHHHHHhhhccccc--cccccc---cccccccCc----------ccccc---ccchhhh
Q 012357 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV--QVPIYD---FKSSSRIGY----------RTLEV---PSSRIVI 163 (465)
Q Consensus 105 ---~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~--~~p~~d---~~~~~~~~~----------~~~~l---~~qRVlI 163 (465)
++.++|+||++.+++. ++.+|+.+....... .....+ ....+..+. ....+ ..||+.|
T Consensus 82 ~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 160 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCI 160 (251)
T ss_pred HHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHH
Confidence 3458999999988875 999999764211110 000000 001111111 01112 2499999
Q ss_pred hHhHHhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcce
Q 012357 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (465)
Q Consensus 164 aegl~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aD 234 (465)
++++ ..+|.++++||||+++|+.....+. +++. +|.|+ .+.+.++||+++++++|++...+...+
T Consensus 161 aral-----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 161 ARAI-----AVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHH-----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999 8899999999999999998755544 4443 47777 677889999999999999998887766
Q ss_pred E
Q 012357 235 I 235 (465)
Q Consensus 235 I 235 (465)
+
T Consensus 235 ~ 235 (251)
T PRK14244 235 I 235 (251)
T ss_pred H
Confidence 5
No 200
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.5e-23 Score=207.25 Aligned_cols=187 Identities=12% Similarity=0.144 Sum_probs=142.3
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC--------
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------- 104 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~-------- 104 (465)
..+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.++.
T Consensus 23 ~i~nl~~~~~~~~il~~vs~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (276)
T PRK14271 23 AAVNLTLGFAGKTVLDQVSMGFPARA---VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF 99 (276)
T ss_pred EEeeEEEEECCEEEeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence 45778888888889999999999999 99999999999999999999998 5 5999999998752
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhcccc-ccccccc---cccccccCc----------ccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA-VQVPIYD---FKSSSRIGY----------RTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~-~~~p~~d---~~~~~~~~~----------~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++ .++.+|+.+...... ....... ....+..+. ....+ ..||+.|++++
T Consensus 100 ~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral 178 (276)
T PRK14271 100 RRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL 178 (276)
T ss_pred hhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 346899999999887 799999986431110 0000000 000001110 01112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+...+.+. +.+.+ +.|+ .+.+.++||++++|.+|++...++..++
T Consensus 179 -----~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 179 -----AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred -----hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8899999999999999998766555 44443 4666 6778899999999999999998887776
No 201
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=4.7e-24 Score=195.30 Aligned_cols=184 Identities=16% Similarity=0.202 Sum_probs=140.8
Q ss_pred eeeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------c
Q 012357 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------S 105 (465)
Q Consensus 38 ~v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----------~ 105 (465)
.+.+.+.-.-+..++|++|+|.++.|+ .++|+||||||||||+-.++|+. |++|+|.+.|.++. .
T Consensus 11 ~l~ktvg~~~~~l~IL~~V~L~v~~Ge---~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~ 87 (228)
T COG4181 11 HLSKTVGQGEGELSILKGVELVVKRGE---TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRA 87 (228)
T ss_pred hhhhhhcCCCcceeEeecceEEecCCc---eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhc
Confidence 344444444567889999999999999 99999999999999999999999 99999999999754 3
Q ss_pred cccccccCCCCCCccchHHHHHHhhhc--cccccccc-cccc------cccccCcccccc---ccchhhhhHhHHhhhhc
Q 012357 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GKAVQVPI-YDFK------SSSRIGYRTLEV---PSSRIVIIEGIYALSEK 173 (465)
Q Consensus 106 ~~ig~vfQ~p~l~~~~tv~enL~~l~~--~~~~~~p~-~d~~------~~~~~~~~~~~l---~~qRVlIaegl~aL~d~ 173 (465)
+.+|++||.+.+++.+|..||++.+.. +.....+. .... ..+++......+ ..|||.|++|+ +
T Consensus 88 ~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAf-----a 162 (228)
T COG4181 88 RHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAF-----A 162 (228)
T ss_pred cceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHh-----c
Confidence 679999999999999999999988643 32111110 0111 122222111112 34999999999 9
Q ss_pred cCcceeeeeeeecCccHHHHHHH---HHHHH-HcCCCH-----HHHHHHHhceEEEccCcEEEec
Q 012357 174 LRPLIDLRVSVTGGVHFDLVKRV---FRDIQ-RVGQEP-----EEIIHQISETVYPMYKAFIEPD 229 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l~rrI---lrdl~-e~G~TI-----~~vi~~i~d~V~~m~~G~I~~~ 229 (465)
.+|.+++.||||..||..+-+++ +-.++ ++|.|+ ...+..-|+|.+.|..|++++.
T Consensus 163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 163 GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 99999999999999999875554 44444 459988 5566777999999999998753
No 202
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=6.4e-24 Score=196.14 Aligned_cols=187 Identities=17% Similarity=0.150 Sum_probs=143.1
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
++++.|.|+..+. ..++.++.|+ +++|+||||||||||++.|+|++ |.+|.|.++|.+.+ .+-++|+||
T Consensus 4 L~~V~~~y~~~~~--~fdl~v~~ge---~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 4 LDDVRFSYGHLPM--RFDLTVPAGE---IVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred ccceEEeeCcceE--EEEEeecCCc---EEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 4567777765443 4577889999 99999999999999999999999 99999999999864 467999999
Q ss_pred CCCCCccchHHHHHHhhhcc-cccccc----cccc-------ccccccCccccccccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEG-KAVQVP----IYDF-------KSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~-~~~~~p----~~d~-------~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
+.++|...||.+|+....+. -+.... ..+. ...++++.+-.....|||++||.+ .-...++++
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARcl-----vR~~PilLL 153 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCL-----VREQPILLL 153 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHH-----hccCCeEEe
Confidence 99999999999999875431 111000 0000 001222211112235999999999 777789999
Q ss_pred eeeecCccHHHHHHH---HHHHH-HcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 182 VSVTGGVHFDLVKRV---FRDIQ-RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 182 DEpts~LD~~l~rrI---lrdl~-e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
|||.++|||.+..++ +.++. +++.|+ .+.+.+++++++++.+|+|..+|...+.+
T Consensus 154 DEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 154 DEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred cCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999999976554 45554 569998 67889999999999999999999888774
No 203
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.3e-23 Score=202.76 Aligned_cols=187 Identities=16% Similarity=0.181 Sum_probs=140.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc---CC---CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF---MP---SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl---lP---~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+ .| ++|.|.++|.++.
T Consensus 6 ~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14245 6 ARDVNFWYGDFHALKGISMEIEEKS---VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDEL 82 (250)
T ss_pred EEEEEEEECCEeEEeeeeEEEeCCC---EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHH
Confidence 4678888888889999999999999 9999999999999999999997 33 4899999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhcccccccc----ccccccccccCc----------ccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP----IYDFKSSSRIGY----------RTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p----~~d~~~~~~~~~----------~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++ .|+.+|+.+.........+ ..-....+..+. ....+ ..||+.|++++
T Consensus 83 ~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14245 83 RKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM 161 (250)
T ss_pred hhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 235899999998887 5999999764321100000 000000111110 11112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+.....+ ++++. +|.|+ .+.+.++||+++.+++|++...+...++.
T Consensus 162 -----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 162 -----AVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred -----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 889999999999999999875554 45553 46777 67788999999999999999999888773
No 204
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.90 E-value=1.8e-23 Score=203.41 Aligned_cols=179 Identities=16% Similarity=0.124 Sum_probs=133.5
Q ss_pred EeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccccc-CCC
Q 012357 44 SFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF-DDP 115 (465)
Q Consensus 44 s~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vf-Q~p 115 (465)
...|+.+.+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|+| |++
T Consensus 28 ~~~~~~~~il~~vs~~i~~Ge---~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~ 104 (236)
T cd03267 28 KRKYREVEALKGISFTIEKGE---IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKT 104 (236)
T ss_pred hcccCCeeeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCcc
Confidence 366788899999999999999 99999999999999999999999 99999999998642 24688988 556
Q ss_pred CCCccchHHHHHHhhhccccccccc-cc--cccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeee
Q 012357 116 RLTDYDTLLENIRGLKEGKAVQVPI-YD--FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVS 183 (465)
Q Consensus 116 ~l~~~~tv~enL~~l~~~~~~~~p~-~d--~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDE 183 (465)
.+++..|+.+++.+........... .. ....+..+. ....+ ..||+.|++++ ..+|.++++||
T Consensus 105 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al-----~~~p~llllDE 179 (236)
T cd03267 105 QLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAAL-----LHEPEILFLDE 179 (236)
T ss_pred ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEcC
Confidence 7778889999987643211000000 00 000111111 11112 24999999999 88999999999
Q ss_pred eecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 184 VTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 184 pts~LD~~l~rrIl---rdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
||+++|+...+.+. ++++++ |.|+ .+.+..+||+++.+.+|++...|
T Consensus 180 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 180 PTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999998766554 555444 7777 67788999999999999987643
No 205
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.2e-23 Score=206.10 Aligned_cols=186 Identities=16% Similarity=0.175 Sum_probs=140.1
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. | ++|.|.++|.++.
T Consensus 13 i~~v~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 89 (264)
T PRK14243 13 TENLNVYYGSFLAVKNVWLDIPKNQ---ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89 (264)
T ss_pred EeeeEEEECCEEEeecceEEEcCCC---EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHH
Confidence 4678888887889999999999999 99999999999999999999986 3 6899999998652
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccc--cc-cccc-----cccc----cccCcccccc---ccchhhhhHhHHh
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV--QV-PIYD-----FKSS----SRIGYRTLEV---PSSRIVIIEGIYA 169 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~--~~-p~~d-----~~~~----~~~~~~~~~l---~~qRVlIaegl~a 169 (465)
++.++|+||++.+++ .++.+|+.+....... .. .... .... .........+ ..||+.|++++
T Consensus 90 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral-- 166 (264)
T PRK14243 90 RRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI-- 166 (264)
T ss_pred hhhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH--
Confidence 346899999998887 5999999764321100 00 0000 0000 0000011112 24999999999
Q ss_pred hhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEcc---------CcEEEecCC
Q 012357 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMY---------KAFIEPDLQ 231 (465)
Q Consensus 170 L~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~---------~G~I~~~g~ 231 (465)
..+|.++++|||++++|+.....+. +.+.+ +.|+ .+.+.++||++++|+ +|+++..+.
T Consensus 167 ---~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 167 ---AVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred ---hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 8899999999999999998765554 44443 5676 778999999999998 799998888
Q ss_pred cceE
Q 012357 232 TAHI 235 (465)
Q Consensus 232 ~aDI 235 (465)
..++
T Consensus 243 ~~~~ 246 (264)
T PRK14243 243 TEKI 246 (264)
T ss_pred HHHH
Confidence 7777
No 206
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.7e-23 Score=208.42 Aligned_cols=188 Identities=14% Similarity=0.115 Sum_probs=141.0
Q ss_pred eeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccc
Q 012357 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~i 108 (465)
.+++++.|+. ..+++++||++.+|+ ++||+|+||||||||+++|+|+. |++|.|.++|.++. ++.+
T Consensus 7 ~~~l~~~~~~~~~~~~l~~v~l~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 7 VENLVFKYEKESDVNQLNGVSFSITKGE---WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred EEEEEEEcCCCCcCeeeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 4677787753 469999999999999 99999999999999999999999 99999999998753 3468
Q ss_pred ccccCCCC-CCccchHHHHHHhhhcccccccccc-c--cccccccCc------ccccc---ccchhhhhHhHHhhhhccC
Q 012357 109 DGNFDDPR-LTDYDTLLENIRGLKEGKAVQVPIY-D--FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 109 g~vfQ~p~-l~~~~tv~enL~~l~~~~~~~~p~~-d--~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
+|+||++. .+...++.+|+.+............ . ....+..+. ....+ ..||+.|++++ ..+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL-----~~~ 158 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGII-----ALR 158 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH-----HcC
Confidence 99999985 5667899999976432111100000 0 000111111 11112 24999999999 999
Q ss_pred cceeeeeeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
|.++++||||+++|+...+.+ ++++.++ |.|+ .+.+. .||+++++++|+++..++..++.
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999875554 4556554 8887 55565 59999999999999998877763
No 207
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.90 E-value=2.8e-23 Score=200.29 Aligned_cols=183 Identities=11% Similarity=0.045 Sum_probs=138.2
Q ss_pred eeeeEeeeCc----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCC----CeeEEEECCeecC----ccc
Q 012357 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS----SRI 107 (465)
Q Consensus 40 ~~~ls~~~g~----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP----~sG~I~lDg~~~~----~~~ 107 (465)
..++++.|.+ +.+++++||++++|+ +++|+||||||||||+++|+|+++ ++|.|.++|.+.. ++.
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQ---VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred eecceeeeecCccccccccCceEEEcCCe---EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 5677888753 689999999999999 999999999999999999999984 7999999998753 456
Q ss_pred cccccCCCCCCccchHHHHHHhhhc--ccc-ccccc---cccc-cccccCc------ccccc---ccchhhhhHhHHhhh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKE--GKA-VQVPI---YDFK-SSSRIGY------RTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~--~~~-~~~p~---~d~~-~~~~~~~------~~~~l---~~qRVlIaegl~aL~ 171 (465)
++|+||++.+++..|+.+|+.+... ... ..... .... ..+..+. ....+ ..||+.|++++
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral---- 158 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL---- 158 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHH----
Confidence 8999999999998999999986422 100 00000 0000 1111111 01112 24999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------H-HHHHHHhceEEEccCcEEEecC
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------E-EIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~-~vi~~i~d~V~~m~~G~I~~~g 230 (465)
..+|.++++|||++++|+..... +++++.++|.|+ . +.+.++||+++++++|+++..|
T Consensus 159 -~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 -LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred -HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 88999999999999999986554 456666668777 3 4788999999999999997654
No 208
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.6e-23 Score=205.45 Aligned_cols=186 Identities=16% Similarity=0.130 Sum_probs=141.2
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.++.
T Consensus 28 ~~nl~~~~~~~~il~~vs~~i~~Ge---~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~ 104 (272)
T PRK14236 28 VRNLNLFYGDKQALFDISMRIPKNR---VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAEL 104 (272)
T ss_pred EEEEEEEECCeeEeeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHH
Confidence 5788888887889999999999999 99999999999999999999997 3 6999999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhcccccccc------cc---c-cccc----cccCcccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP------IY---D-FKSS----SRIGYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p------~~---d-~~~~----~~~~~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++. |+.+|+.+.........+ .. + .... .........+ ..||+.|++++
T Consensus 105 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 183 (272)
T PRK14236 105 RRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAI 183 (272)
T ss_pred hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 3468999999988875 999999764211110000 00 0 0000 0011011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.+.++||||+++|+.....+ ++++.+ +.|+ .+.+.++||++++|++|++...++..++
T Consensus 184 -----~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 184 -----AIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred -----HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 889999999999999999865544 455544 6676 6778899999999999999988877765
No 209
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.4e-23 Score=204.33 Aligned_cols=187 Identities=14% Similarity=0.090 Sum_probs=141.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CC-----eeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~-----sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. |+ .|.|.++|.++.
T Consensus 10 ~~nl~~~~~~~~il~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~ 86 (261)
T PRK14258 10 VNNLSFYYDTQKILEGVSMEIYQSK---VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL 86 (261)
T ss_pred EeeEEEEeCCeeEeeceEEEEcCCc---EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence 5678888877789999999999999 99999999999999999999999 64 799999998742
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccc----ccccccccccccc----------Ccccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV----QVPIYDFKSSSRI----------GYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~----~~p~~d~~~~~~~----------~~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++ .|+.+|+......... ..........+.. ......+ ..||+.|++++
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 165 (261)
T PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL 165 (261)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 245899999998887 8999999764211000 0000000000111 1011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccC-----cEEEecCCc
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYK-----AFIEPDLQT 232 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e-~G~TI------~~vi~~i~d~V~~m~~-----G~I~~~g~~ 232 (465)
..+|.++++||||+++|+.....+. +.+++ .|.|+ ...+.++||++++|++ |+++..++.
T Consensus 166 -----~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 240 (261)
T PRK14258 166 -----AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLT 240 (261)
T ss_pred -----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCH
Confidence 8899999999999999998765544 55543 47887 7889999999999999 999998888
Q ss_pred ceE
Q 012357 233 AHI 235 (465)
Q Consensus 233 aDI 235 (465)
.++
T Consensus 241 ~~~ 243 (261)
T PRK14258 241 KKI 243 (261)
T ss_pred HHH
Confidence 876
No 210
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2e-23 Score=223.94 Aligned_cols=183 Identities=12% Similarity=0.096 Sum_probs=141.1
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.++|
T Consensus 7 ~~~l~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 83 (501)
T PRK11288 7 FDGIGKTFPGVKALDDISFDCRAGQ---VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAI 83 (501)
T ss_pred EeeeEEEECCEEEEeeeeEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEE
Confidence 4678888888889999999999999 99999999999999999999999 89999999998753 346899
Q ss_pred ccCCCCCCccchHHHHHHhhhccc--c-ccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccC
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGK--A-VQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~--~-~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
+||++.+++..|+.+|+.+..... . ..... .-....+..+. ....+ ..||+.|++++ ..+
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral-----~~~ 158 (501)
T PRK11288 84 IYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKAL-----ARN 158 (501)
T ss_pred EEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHH-----HhC
Confidence 999999999899999998742110 0 00000 00000111111 01112 24999999999 889
Q ss_pred cceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 176 PLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
|.++++||||++||+....++. +++.++|.|+ .+.+.++||++++|++|++...+
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~ 222 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATF 222 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 9999999999999998765544 6665668887 67888999999999999987544
No 211
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.90 E-value=2.3e-23 Score=204.04 Aligned_cols=188 Identities=16% Similarity=0.136 Sum_probs=137.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee-----cC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN-----DS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~-----~~--------- 104 (465)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.++|.+ +.
T Consensus 6 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 6 VSGLSKSYGGGKGCRDVSFDLYPGE---VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred EeeeEEEeCCceEeecceEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence 4678888877789999999999999 99999999999999999999999 999999999875 32
Q ss_pred --ccccccccCCCC--CCccchHHHHHHhhhc--cc-cc-cccccccccccccCc-------ccccc---ccchhhhhHh
Q 012357 105 --SRIIDGNFDDPR--LTDYDTLLENIRGLKE--GK-AV-QVPIYDFKSSSRIGY-------RTLEV---PSSRIVIIEG 166 (465)
Q Consensus 105 --~~~ig~vfQ~p~--l~~~~tv~enL~~l~~--~~-~~-~~p~~d~~~~~~~~~-------~~~~l---~~qRVlIaeg 166 (465)
++.++|+||++. ++...++.+|+..... .. .. .....-....+.++. ....+ ..||+.|+++
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lara 162 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARN 162 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHH
Confidence 135899999975 3344567777753210 00 00 000000000111111 11112 2499999999
Q ss_pred HHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 167 l~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+ ...|.++++|||++++|+.....+ ++++.+ .|.|+ .+.+..+||++++|++|++...++..++
T Consensus 163 l-----~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 163 L-----VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred H-----hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHH
Confidence 9 899999999999999999875554 455544 37887 6778889999999999999988877766
No 212
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.90 E-value=1.3e-23 Score=203.96 Aligned_cols=185 Identities=20% Similarity=0.205 Sum_probs=136.6
Q ss_pred eeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccc
Q 012357 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~i 108 (465)
.+++++.|+. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.+
T Consensus 3 i~~l~~~~~~~~~~~~l~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKGLSLTIPPGK---TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI 79 (238)
T ss_pred EEEEEEecCCCCCccceeceEEEecCCC---EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhE
Confidence 3567777753 569999999999999 99999999999999999999999 89999999998653 2458
Q ss_pred ccccCCCCCCccchHHHHHHhhhcccccc-cc-ccc-cccc---cc--------cCcccccc---ccchhhhhHhHHhhh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQ-VP-IYD-FKSS---SR--------IGYRTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~~~~-~p-~~d-~~~~---~~--------~~~~~~~l---~~qRVlIaegl~aL~ 171 (465)
+|+||++.+++ .|+.+|+.+........ .. ..+ .... .. .......+ ..||+.|++++
T Consensus 80 ~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al---- 154 (238)
T cd03249 80 GLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL---- 154 (238)
T ss_pred EEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH----
Confidence 99999998776 69999997642211000 00 000 0000 00 00001112 24999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
...|.++++||||+++|+....++. +++. +|.|+ .+.+. +||+++++.+|++...++..++
T Consensus 155 -~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 155 -LRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred -hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHH
Confidence 8999999999999999998766554 4444 57777 55666 8999999999999887765554
No 213
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.6e-23 Score=202.63 Aligned_cols=186 Identities=15% Similarity=0.150 Sum_probs=139.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC---C---CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---P---~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|+. | ++|.|.++|.++.
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14255 8 SSDVHLFYGKFEALKGIDLDFNQNE---ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQL 84 (252)
T ss_pred EEeEEEEECCeeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHh
Confidence 4678888888889999999999999 99999999999999999999985 3 4899999998652
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccccccc-cccc---ccccc----------Ccccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI-YDFK---SSSRI----------GYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~-~d~~---~~~~~----------~~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++ .|+.+|+.+.........+. .+.. ..+.. ......+ ..||+.|++++
T Consensus 85 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral 163 (252)
T PRK14255 85 RKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL 163 (252)
T ss_pred cCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence 246899999999887 69999998642111000000 0000 00000 0011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+.....+. +++.+ +.|+ .+.+.++||+++.|.+|++...++..++
T Consensus 164 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 164 -----AVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred -----hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8899999999999999998765554 55544 4666 7788899999999999999988876665
No 214
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.2e-23 Score=209.86 Aligned_cols=188 Identities=14% Similarity=0.143 Sum_probs=139.0
Q ss_pred eeeeEeeeC------cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------
Q 012357 40 EDTLSFEKG------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------- 104 (465)
Q Consensus 40 ~~~ls~~~g------~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------- 104 (465)
.+++++.|+ .+.+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.+||.++.
T Consensus 7 ~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 7 CKNVSYKYESNEESTEKLALDDVNLEVKKGE---FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred EeeeEEEcCCCCCCCCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 456777775 2569999999999999 99999999999999999999999 89999999998753
Q ss_pred ccccccccCCCCC-CccchHHHHHHhhhccccccc---cccccccccccCc------ccccc---ccchhhhhHhHHhhh
Q 012357 105 SRIIDGNFDDPRL-TDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 105 ~~~ig~vfQ~p~l-~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~ 171 (465)
++.++|+||++.. +...++.+|+.+......... ...-....+..+. ....+ ..||+.|++++
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral---- 159 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL---- 159 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH----
Confidence 3468999999852 334689999976432111100 0000000111111 11112 24999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHH---HHHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
...|.++++||||++||+..... +++++++ .|.|+ ++.+.. ||+++++++|++...++..++.
T Consensus 160 -~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 160 -AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred -HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 89999999999999999987554 4566655 48887 566665 9999999999999998877764
No 215
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.90 E-value=1.2e-23 Score=203.93 Aligned_cols=187 Identities=17% Similarity=0.262 Sum_probs=138.1
Q ss_pred eeeeEeeeC--cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g--~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
.+++++.|+ ...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNISLRIKPGE---VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred EEEEEEecCCCCccceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 357778875 3679999999999999 99999999999999999999999 99999999998653 34689
Q ss_pred cccCCCCCCccchHHHHHHhhhccccc-cc-cccc-cccc---ccc--------Ccccccc---ccchhhhhHhHHhhhh
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAV-QV-PIYD-FKSS---SRI--------GYRTLEV---PSSRIVIIEGIYALSE 172 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~-~~-p~~d-~~~~---~~~--------~~~~~~l---~~qRVlIaegl~aL~d 172 (465)
|+||++.+++ .|+.+|+......... .. ...+ .... ... ......+ ..|||.|++++
T Consensus 80 ~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral----- 153 (237)
T cd03252 80 VVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL----- 153 (237)
T ss_pred EEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH-----
Confidence 9999998775 6999999764321100 00 0000 0000 000 0011112 23999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
...|.++++||||+++|+.....+.+.+.+ +|.|+ .+.+. .||+++++++|++...++..++.
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELL 224 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHH
Confidence 889999999999999999976655544332 47777 55565 59999999999999888766653
No 216
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.90 E-value=1.8e-23 Score=228.11 Aligned_cols=188 Identities=16% Similarity=0.186 Sum_probs=145.8
Q ss_pred eeeeeEeee-CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------cccccc
Q 012357 39 IEDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDG 110 (465)
Q Consensus 39 v~~~ls~~~-g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~-------~~~ig~ 110 (465)
..++++|.| ++.++|+|+||++++|+ .++|+|+||||||||++.|+|+.|++|.|.+||.++. ++.++|
T Consensus 351 ~~~~vsf~~~~~~~vL~~i~l~i~~G~---~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 351 EAEDLEILSPDGKTLAGPLNFTLPAGQ---RIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred EEEeeEEeccCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEE
Confidence 457888655 56789999999999999 9999999999999999999999999999999998764 467999
Q ss_pred ccCCCCCCccchHHHHHHhhhcccc---ccc-----------cccccccccccCcccccc---ccchhhhhHhHHhhhhc
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKA---VQV-----------PIYDFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEK 173 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~---~~~-----------p~~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~ 173 (465)
++|+|.+|+ .|+++||.+...... +.. ..........++..-..+ ..||+.||||+ .
T Consensus 428 v~Q~~~LF~-~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl-----l 501 (588)
T PRK11174 428 VGQNPQLPH-GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL-----L 501 (588)
T ss_pred ecCCCcCCC-cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH-----h
Confidence 999999886 599999988642111 000 000001111121111112 34999999999 7
Q ss_pred cCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
-+|.++++||||+++|....+++.+.+.+ +++|+ .+.+. .||+|+++++|++.+.|++.++.
T Consensus 502 ~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 502 QPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeEeecCCHHHHH
Confidence 89999999999999999998888766654 47777 45454 59999999999999999998874
No 217
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.90 E-value=2.1e-23 Score=201.30 Aligned_cols=181 Identities=15% Similarity=0.234 Sum_probs=132.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~v 111 (465)
.+++++.|+...+++++||++++|+ +++|+||||||||||+++|+|+. |++|.|.++|.+.. ++.++|+
T Consensus 10 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 86 (225)
T PRK10247 10 LQNVGYLAGDAKILNNISFSLRAGE---FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYC 86 (225)
T ss_pred EeccEEeeCCceeeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEE
Confidence 4677888877889999999999999 99999999999999999999999 89999999998653 2468999
Q ss_pred cCCCCCCccchHHHHHHhhhc--cccccccccccccccccCc-------ccccc---ccchhhhhHhHHhhhhccCccee
Q 012357 112 FDDPRLTDYDTLLENIRGLKE--GKAVQVPIYDFKSSSRIGY-------RTLEV---PSSRIVIIEGIYALSEKLRPLID 179 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l~~--~~~~~~p~~d~~~~~~~~~-------~~~~l---~~qRVlIaegl~aL~d~~~p~Ld 179 (465)
||++.+++ .++.+|+.+... +........ ....+.++. ....+ ..||+.|++++ ..+|.++
T Consensus 87 ~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral-----~~~p~ll 159 (225)
T PRK10247 87 AQTPTLFG-DTVYDNLIFPWQIRNQQPDPAIF-LDDLERFALPDTILTKNIAELSGGEKQRISLIRNL-----QFMPKVL 159 (225)
T ss_pred eccccccc-ccHHHHHHhHHhhcCCChHHHHH-HHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHH-----hcCCCEE
Confidence 99998887 499999976321 110000000 011111111 11111 24999999999 8899999
Q ss_pred eeeeeecCccHHHHH---HHHHHHHH-cCCCH------HHHHHHHhceEEEcc-CcEEEecCC
Q 012357 180 LRVSVTGGVHFDLVK---RVFRDIQR-VGQEP------EEIIHQISETVYPMY-KAFIEPDLQ 231 (465)
Q Consensus 180 llDEpts~LD~~l~r---rIlrdl~e-~G~TI------~~vi~~i~d~V~~m~-~G~I~~~g~ 231 (465)
++||||+++|+.... ++++++.+ .|.|+ .+.+. +||+++.+. ++..+.+|.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 999999999998755 44566654 47777 55565 699999994 444444444
No 218
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.90 E-value=3.3e-23 Score=205.33 Aligned_cols=189 Identities=16% Similarity=0.190 Sum_probs=140.6
Q ss_pred eeeeEeeeC---------cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----
Q 012357 40 EDTLSFEKG---------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (465)
Q Consensus 40 ~~~ls~~~g---------~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----- 104 (465)
.+++++.|+ ...+++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.++|.+..
T Consensus 6 ~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 6 VSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGE---TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred EeceEEEecCCccccccCceeeEeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 456777775 4789999999999999 99999999999999999999999 99999999998652
Q ss_pred -----ccccccccCCCC--CCccchHHHHHHhhhcc-cccc---ccccccccccccCc-------ccccc---ccchhhh
Q 012357 105 -----SRIIDGNFDDPR--LTDYDTLLENIRGLKEG-KAVQ---VPIYDFKSSSRIGY-------RTLEV---PSSRIVI 163 (465)
Q Consensus 105 -----~~~ig~vfQ~p~--l~~~~tv~enL~~l~~~-~~~~---~p~~d~~~~~~~~~-------~~~~l---~~qRVlI 163 (465)
++.++|+||++. +++..++.+++.+.... .... ....-.......+. ....+ ..||+.|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 346899999983 55667888887543210 0000 00000000011111 11112 3499999
Q ss_pred hHhHHhhhhccCcceeeeeeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcc
Q 012357 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (465)
Q Consensus 164 aegl~aL~d~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~a 233 (465)
++++ ..+|.++++||||+++|+.... ++++++.++ |.|+ .+.+..+||+++++.+|++...++..
T Consensus 163 aral-----~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 237 (268)
T PRK10419 163 ARAL-----AVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVG 237 (268)
T ss_pred HHHH-----hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChh
Confidence 9999 8999999999999999998644 455666654 7777 67888999999999999999998887
Q ss_pred eEE
Q 012357 234 HIK 236 (465)
Q Consensus 234 DIi 236 (465)
++.
T Consensus 238 ~~~ 240 (268)
T PRK10419 238 DKL 240 (268)
T ss_pred hcc
Confidence 763
No 219
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.90 E-value=3.2e-23 Score=210.55 Aligned_cols=197 Identities=21% Similarity=0.257 Sum_probs=150.6
Q ss_pred CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC----------ccccccccCCCC-
Q 012357 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----------SRIIDGNFDDPR- 116 (465)
Q Consensus 48 g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~----------~~~ig~vfQ~p~- 116 (465)
....|+++|||++.+|+ .+||+|.||||||||-++|.+++|+.|.|.++|.++. ++++-.+||||.
T Consensus 298 ~~~~AVd~isl~L~~gq---TlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPyg 374 (534)
T COG4172 298 DHLRAVDGISLTLRRGQ---TLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYG 374 (534)
T ss_pred hheEEeccceeEecCCC---eEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCC
Confidence 34789999999999999 9999999999999999999999977799999999864 456788999984
Q ss_pred -CCccchHHHHHHhhhcccc--ccccc-------------cccccccccCccccccccchhhhhHhHHhhhhccCcceee
Q 012357 117 -LTDYDTLLENIRGLKEGKA--VQVPI-------------YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 117 -l~~~~tv~enL~~l~~~~~--~~~p~-------------~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
+.+.+|+.+.|...+.-+. ..... .|-....+.+.+......||++||+|+ .++|.+.+
T Consensus 375 SLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAl-----iLkP~~i~ 449 (534)
T COG4172 375 SLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARAL-----ILKPELIL 449 (534)
T ss_pred CCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHH-----hcCCcEEE
Confidence 6788999999887542111 00000 000001111111111234999999999 99999999
Q ss_pred eeeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEEeeCCCCCCCccCCc
Q 012357 181 RVSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNP 250 (465)
Q Consensus 181 lDEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~~p~~~~~~p 250 (465)
+||||++||..... .++|++.++ |.+. +.++..+||+|++|.+|+|+++|+..++ |.+|
T Consensus 450 LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~i-----------f~~P 518 (534)
T COG4172 450 LDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAV-----------FANP 518 (534)
T ss_pred ecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHH-----------hcCC
Confidence 99999999988654 456888765 7766 8899999999999999999999999988 6677
Q ss_pred cccccCCCcccHHHHHHHh
Q 012357 251 TYILKSTRPVTVDEIKAVM 269 (465)
Q Consensus 251 ~~ilk~~~~~~~~~i~~~l 269 (465)
+++-|+.-+.+.+
T Consensus 519 ------~~~YT~~L~~aa~ 531 (534)
T COG4172 519 ------QHEYTRALLAAAF 531 (534)
T ss_pred ------CcHHHHHHHHhhc
Confidence 6666655555443
No 220
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=3.7e-23 Score=198.18 Aligned_cols=175 Identities=15% Similarity=0.103 Sum_probs=132.2
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----ccccccccCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDD 114 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----~~~ig~vfQ~ 114 (465)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.++|.++. ++.++|++|+
T Consensus 14 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~ 90 (214)
T PRK13543 14 AHALAFSRNEEPVFGPLDFHVDAGE---ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHL 90 (214)
T ss_pred EeeEEEecCCceeeecceEEECCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecC
Confidence 4677888877789999999999999 99999999999999999999999 89999999998754 2358999999
Q ss_pred CCCCccchHHHHHHhhhccccccccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeeeee
Q 012357 115 PRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (465)
Q Consensus 115 p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpt 185 (465)
+.+++..++.+|+.+....................+. ....+ ..||+.+++++ ..+|.++++||||
T Consensus 91 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p~llllDEPt 165 (214)
T PRK13543 91 PGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLW-----LSPAPLWLLDEPY 165 (214)
T ss_pred cccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCc
Confidence 9888888999998764321100000000000111111 11112 24999999999 8899999999999
Q ss_pred cCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEcc
Q 012357 186 GGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMY 222 (465)
Q Consensus 186 s~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~ 222 (465)
+++|+...+.+ ++++.++|.|+ .+.+.++|++++.+.
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 166 ANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEe
Confidence 99999875544 45555668887 778889999988764
No 221
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=6e-23 Score=189.01 Aligned_cols=142 Identities=14% Similarity=0.134 Sum_probs=117.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc--------ccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~--------~~ig~ 110 (465)
.+++++.|+..++++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.++|.++.. +.++|
T Consensus 3 ~~~l~~~~~~~~vl~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 3 LRGITKRFGGVKALDGVSLSVRRGE---VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 4678889988889999999999999 99999999999999999999999 899999999976531 12333
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccH
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~ 190 (465)
+|| .++ ...||+.+++++ ...|.+.++|||++++|+
T Consensus 80 ~~q----------------------------------LS~-----G~~qrl~laral-----~~~p~illlDEP~~~LD~ 115 (163)
T cd03216 80 VYQ----------------------------------LSV-----GERQMVEIARAL-----ARNARLLILDEPTAALTP 115 (163)
T ss_pred EEe----------------------------------cCH-----HHHHHHHHHHHH-----hcCCCEEEEECCCcCCCH
Confidence 333 112 124899999999 889999999999999999
Q ss_pred HHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEe
Q 012357 191 DLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEP 228 (465)
Q Consensus 191 ~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~ 228 (465)
...+.+ ++++.++|.|+ .+.+.++||+++.+++|++..
T Consensus 116 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 116 AEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 875554 46666668777 667889999999999999864
No 222
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=2.8e-23 Score=197.66 Aligned_cols=177 Identities=16% Similarity=0.212 Sum_probs=133.1
Q ss_pred eeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
.+++++.|+. ..+++++||.+++|+ +++|+|+||||||||+++|+|+. |++|.|.++|.+.. ++.++
T Consensus 9 ~~~l~~~~~~~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 85 (207)
T cd03369 9 VENLSVRYAPDLPPVLKNVSFKVKAGE---KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT 85 (207)
T ss_pred EEEEEEEeCCCCcccccCceEEECCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 4667777764 479999999999999 99999999999999999999999 89999999998752 35699
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccccccccccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeec
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts 186 (465)
|+||++.+++ .|+.+|+........ ..... ..+ .......+ ..||+.|++++ ..+|.++++|||++
T Consensus 86 ~v~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~--~l~-~~~~~~~LS~G~~qrv~laral-----~~~p~llllDEP~~ 154 (207)
T cd03369 86 IIPQDPTLFS-GTIRSNLDPFDEYSD--EEIYG--ALR-VSEGGLNLSQGQRQLLCLARAL-----LKRPRVLVLDEATA 154 (207)
T ss_pred EEecCCcccC-ccHHHHhcccCCCCH--HHHHH--Hhh-ccCCCCcCCHHHHHHHHHHHHH-----hhCCCEEEEeCCcc
Confidence 9999998876 599999965321000 00000 000 11111112 34999999999 88999999999999
Q ss_pred CccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCC
Q 012357 187 GVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (465)
Q Consensus 187 ~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~ 231 (465)
++|+.....+.+-+.+ +|.|+ .+.+.. ||++++|++|++...+.
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 155 SIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence 9999976655544332 37776 455655 99999999999977654
No 223
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=1.5e-23 Score=209.05 Aligned_cols=187 Identities=11% Similarity=0.070 Sum_probs=140.7
Q ss_pred eeeeEeee--CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------cccccc
Q 012357 40 EDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~--g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~-------~~~ig~ 110 (465)
.+++++.| +...+|+++||++++|+ ++||+|+||||||||+++|+|+++.+|.|.+||.++. ++.++|
T Consensus 5 ~~nls~~~~~~~~~~l~~isl~I~~Ge---~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 5 VKDLTAKYTEGGNAVLENISFSISPGQ---RVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEeCCCCCcceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 56788888 45679999999999999 9999999999999999999999977899999998753 356999
Q ss_pred ccCCCCCCccchHHHHHHhhhccc--cccc--cccccc--cccc-------c--Cccccc-cccchhhhhHhHHhhhhcc
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGK--AVQV--PIYDFK--SSSR-------I--GYRTLE-VPSSRIVIIEGIYALSEKL 174 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~--~~~~--p~~d~~--~~~~-------~--~~~~~~-l~~qRVlIaegl~aL~d~~ 174 (465)
+||++.+|+ .|+.+|+....... .... ...... .... + ++...+ ...||+.+++++ ..
T Consensus 82 v~q~~~lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal-----l~ 155 (275)
T cd03289 82 IPQKVFIFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV-----LS 155 (275)
T ss_pred ECCCcccch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH-----hc
Confidence 999999987 49999996432100 0000 000000 0000 0 000111 124999999999 88
Q ss_pred CcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 175 ~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+|.++++||||+++|+.....+.+.+.+ .|.|+ .+.+.. ||++++|++|++++.+.+.+++
T Consensus 156 ~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~ 224 (275)
T cd03289 156 KAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLL 224 (275)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHh
Confidence 9999999999999999977666555543 37777 555554 9999999999999999988874
No 224
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.1e-23 Score=203.35 Aligned_cols=188 Identities=15% Similarity=0.099 Sum_probs=140.7
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC--------
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------- 104 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~-------- 104 (465)
..+..++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ | .+|.|.++|.++.
T Consensus 10 ~~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 10 DCKLDKIFYGNFMAVRDSHVPIRKNE---ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred EEEeEEEEeCCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 34566777888899999999999999 99999999999999999999999 5 6999999998752
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhcccccccc--ccccccccccCc----------ccccc---ccchhhhhHhHH
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP--IYDFKSSSRIGY----------RTLEV---PSSRIVIIEGIY 168 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p--~~d~~~~~~~~~----------~~~~l---~~qRVlIaegl~ 168 (465)
++.++|+||++.++ ..|+.+|+.+.......... ..-....+..+. ....+ ..||+.|++++
T Consensus 87 ~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral- 164 (261)
T PRK14263 87 VRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAI- 164 (261)
T ss_pred hhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH-
Confidence 24589999999887 58999999764321100000 000000011110 01112 24999999999
Q ss_pred hhhhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEcc--------CcEEEecCCc
Q 012357 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMY--------KAFIEPDLQT 232 (465)
Q Consensus 169 aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~--------~G~I~~~g~~ 232 (465)
..+|.++++||||+++|+....++.+-+.+ +|.|+ .+.+..+||++++|+ +|++++.++.
T Consensus 165 ----~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 165 ----ATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred ----HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 889999999999999999876655533332 36676 677889999999996 8999999987
Q ss_pred ceE
Q 012357 233 AHI 235 (465)
Q Consensus 233 aDI 235 (465)
.++
T Consensus 241 ~~~ 243 (261)
T PRK14263 241 AQI 243 (261)
T ss_pred HHH
Confidence 776
No 225
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.90 E-value=2.5e-23 Score=199.37 Aligned_cols=180 Identities=15% Similarity=0.153 Sum_probs=131.5
Q ss_pred eeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|+. |++|.|.++|.++. ++.++
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~G~---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 5 FRNVSFSYPNQEIPALDNVSLTIRAGE---KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 4677888764 579999999999999 99999999999999999999999 89999999998653 24689
Q ss_pred cccCCCCCCccchHHHHHHhhhccccc-cc-cccc-cccccccC-----c------ccccc---ccchhhhhHhHHhhhh
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAV-QV-PIYD-FKSSSRIG-----Y------RTLEV---PSSRIVIIEGIYALSE 172 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~-~~-p~~d-~~~~~~~~-----~------~~~~l---~~qRVlIaegl~aL~d 172 (465)
|+||++.+++ .++.+|+.+....... .. ...+ +....... . ....+ ..||+.|++++
T Consensus 82 ~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al----- 155 (220)
T cd03245 82 YVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL----- 155 (220)
T ss_pred EeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH-----
Confidence 9999998886 6999998764211100 00 0000 00000000 0 00112 24999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEec
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPD 229 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~ 229 (465)
...|.++++||||++||+.....+.+.+.+ ++.|+ .+.+ ++||+++.+++|++...
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD 219 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence 889999999999999999976655544433 13565 4555 69999999999998654
No 226
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.90 E-value=3.9e-23 Score=202.98 Aligned_cols=186 Identities=15% Similarity=0.202 Sum_probs=137.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C----CeeEEEECCeecC-----ccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDS-----SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P----~sG~I~lDg~~~~-----~~~ig 109 (465)
.+++++.| ...+++++||++.+|+ +++|+|+||||||||+++|+|++ | ++|.|.++|.++. ++.++
T Consensus 7 ~~~l~~~~-~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 7 LRNIALQA-AQPLVHGVSLTLQRGR---VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EeCeEEEe-ccceecceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 45677777 4679999999999999 99999999999999999999999 8 8999999998753 24689
Q ss_pred cccCCCC--CCccchHHHHHHhhhc--cccccccccccccccccCc---------ccccc---ccchhhhhHhHHhhhhc
Q 012357 110 GNFDDPR--LTDYDTLLENIRGLKE--GKAVQVPIYDFKSSSRIGY---------RTLEV---PSSRIVIIEGIYALSEK 173 (465)
Q Consensus 110 ~vfQ~p~--l~~~~tv~enL~~l~~--~~~~~~p~~d~~~~~~~~~---------~~~~l---~~qRVlIaegl~aL~d~ 173 (465)
|+||++. +.+..++.+++..... +........ ....+..+. ....+ ..||+.|++++ .
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral-----~ 156 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATL-TAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL-----L 156 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCChHHHHH-HHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHH-----h
Confidence 9999985 3345677777654321 111000000 000011111 11112 24999999999 8
Q ss_pred cCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 174 LRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
.+|.++++||||+++|+...+. +++++.++ |.|+ .+.+..+||+++++.+|++...++..++
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 157 CEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999986544 45666544 7887 6778889999999999999988877765
No 227
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.90 E-value=4.7e-23 Score=197.99 Aligned_cols=178 Identities=17% Similarity=0.170 Sum_probs=134.0
Q ss_pred eeeeEeeeCc----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 012357 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (465)
Q Consensus 40 ~~~ls~~~g~----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------- 104 (465)
.+++++.|+. ..+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.++.
T Consensus 4 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~---~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 4 IRNLNHYYGHGSLRKQVLFDINLEINPGE---IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEccCCCcceeEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 3567777754 789999999999999 99999999999999999999999 89999999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccc-cccccc---cccccccccCcc------cccc---ccchhhhhHhHHhhh
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGK-AVQVPI---YDFKSSSRIGYR------TLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~-~~~~p~---~d~~~~~~~~~~------~~~l---~~qRVlIaegl~aL~ 171 (465)
++.++|+||++.+++..|+.+|+.+..... ...... .-....+..+.. ...+ ..||+.|++++
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral---- 156 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARAL---- 156 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH----
Confidence 246899999999998889999998653211 110000 000111111111 1112 24999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHHH---HHHHHH-cCCCH------HHHHHHHhceEEEccCcEE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQR-VGQEP------EEIIHQISETVYPMYKAFI 226 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I 226 (465)
..+|.++++|||++++|+.....+ ++++.+ .|.|+ ++. ..+||+++++++|++
T Consensus 157 -~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 157 -VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred -hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 899999999999999999875544 455554 47777 554 479999999999875
No 228
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.9e-23 Score=201.04 Aligned_cols=185 Identities=21% Similarity=0.243 Sum_probs=137.1
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccccc
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~ 110 (465)
.+++++.|+ ...+++++||++++|+ +++|+||||||||||+++|+|+. |++|.|.++|.+.. ++.++|
T Consensus 3 ~~~l~~~~~~~~~~l~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 3 FENVTFAYDPGRPVLKDVSFTIPAGK---KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred EEEEEEEeCCCCceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 357788885 5679999999999999 99999999999999999999999 89999999998753 245899
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccc-c-------cccc------ccccccCcccccc---ccchhhhhHhHHhhhhc
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQV-P-------IYDF------KSSSRIGYRTLEV---PSSRIVIIEGIYALSEK 173 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~~-p-------~~d~------~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~ 173 (465)
+||++.+++ .|+.+|+.+......... . ..+. ............+ ..||+.|++++ .
T Consensus 80 ~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL-----~ 153 (236)
T cd03253 80 VPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI-----L 153 (236)
T ss_pred ECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH-----h
Confidence 999998885 699999976432110000 0 0000 0000000001112 24999999999 9
Q ss_pred cCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 174 LRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
.+|.++++|||++++|+.....+. +++++ |.|+ .+.+.. ||+++.|++|++...+...++
T Consensus 154 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 154 KNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEEL 222 (236)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHH
Confidence 999999999999999998766554 44444 7777 455654 999999999999887766554
No 229
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.89 E-value=6.3e-23 Score=198.15 Aligned_cols=179 Identities=16% Similarity=0.054 Sum_probs=130.6
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCC
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l 117 (465)
..++++..|+..++++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.++|.+..... ....+
T Consensus 24 ~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-----~~~~~ 95 (224)
T cd03220 24 GILGRKGEVGEFWALKDVSFEVPRGE---RIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG-----LGGGF 95 (224)
T ss_pred hhhhhhhhcCCeEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhc-----ccccC
Confidence 35678889999999999999999999 99999999999999999999999 99999999998653111 12234
Q ss_pred CccchHHHHHHhhhcccccccccc---ccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeeeee
Q 012357 118 TDYDTLLENIRGLKEGKAVQVPIY---DFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~~~~~~p~~---d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpt 185 (465)
++..|+.+|+.............. -....+..+. ....+ ..||+.|++++ ...|.+.++|||+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral-----~~~p~llllDEP~ 170 (224)
T cd03220 96 NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIAT-----ALEPDILLIDEVL 170 (224)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCc
Confidence 456799999876432110000000 0000011110 01112 24999999999 8899999999999
Q ss_pred cCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 186 GGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 186 s~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
+++|+...+. +++++.++|.|+ .+.+..+||+++++.+|++...|
T Consensus 171 ~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 171 AVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999986554 445555567777 67788999999999999987653
No 230
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.89 E-value=2.7e-23 Score=201.39 Aligned_cols=175 Identities=15% Similarity=0.140 Sum_probs=132.4
Q ss_pred EeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc--cccccccCCCCCCccchHHHHHHh
Q 012357 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--RIIDGNFDDPRLTDYDTLLENIRG 129 (465)
Q Consensus 53 L~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~--~~ig~vfQ~p~l~~~~tv~enL~~ 129 (465)
++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++.. ...+|+||++.+++..|+.+|+.+
T Consensus 1 l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGE---FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 478999999999 99999999999999999999999 899999999987642 235899999999988999999976
Q ss_pred hhcc--ccccccc-cc--cccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHH
Q 012357 130 LKEG--KAVQVPI-YD--FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR 195 (465)
Q Consensus 130 l~~~--~~~~~p~-~d--~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rr 195 (465)
.... ....... .. ....+..+. ....+ ..||+.|++++ ..+|.++++||||+++|+...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al-----~~~p~lllLDEPt~gLD~~~~~~ 152 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARAL-----SIRPKVLLLDEPFGALDALTRGN 152 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHH-----HcCCCEEEEcCCCcCCCHHHHHH
Confidence 4211 0000000 00 001111111 11112 24999999999 89999999999999999987655
Q ss_pred H---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 196 V---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 196 I---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+ ++++.++ |.|+ .+.+.++||++++|++|+++..++..++
T Consensus 153 l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 153 LQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 5 4555544 7787 6778999999999999999988876655
No 231
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3.9e-23 Score=191.37 Aligned_cols=151 Identities=21% Similarity=0.261 Sum_probs=123.7
Q ss_pred eeeeEeeeCcE--EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 40 EDTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~~--~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
.+++++.|+.. .+++++||++++|+ +++|+||||||||||+++|+|++ |.+|.|.++|.+.. ++.++
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~G~---~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDVSLTIKPGE---KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 35778888664 79999999999999 99999999999999999999999 89999999998753 24689
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCcc
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD 189 (465)
|+||++.+++ .++.+|+ .++ ...||+.|++++ ..+|.++++||||+++|
T Consensus 80 ~~~~~~~~~~-~t~~e~l--------------------LS~-----G~~~rl~la~al-----~~~p~llllDEP~~gLD 128 (171)
T cd03228 80 YVPQDPFLFS-GTIRENI--------------------LSG-----GQRQRIAIARAL-----LRDPPILILDEATSALD 128 (171)
T ss_pred EEcCCchhcc-chHHHHh--------------------hCH-----HHHHHHHHHHHH-----hcCCCEEEEECCCcCCC
Confidence 9999998776 5888887 111 123899999999 88999999999999999
Q ss_pred HHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcE
Q 012357 190 FDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 190 ~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~ 225 (465)
+.....+.+-+.+ ++.|+ .+.+.. ||+++.+++|+
T Consensus 129 ~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 129 PETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 9876655544332 36666 566666 99999998773
No 232
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3.3e-23 Score=199.74 Aligned_cols=185 Identities=17% Similarity=0.206 Sum_probs=136.5
Q ss_pred eeeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccccc
Q 012357 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~ 110 (465)
.+++++.|+. ..+++++||++++|+ +++|+||||||||||+++|+|++ |.+|.|.++|.++. ++.++|
T Consensus 5 ~~~l~~~~~~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 5 FENVNFSYDEKKPVLKDINFSIKPGE---TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred EEEEEEecCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 5678888864 579999999999999 99999999999999999999999 89999999998653 346899
Q ss_pred ccCCCCCCccchHHHHHHhhhccccc-ccc----cccc-cccccc--------Ccccccc---ccchhhhhHhHHhhhhc
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAV-QVP----IYDF-KSSSRI--------GYRTLEV---PSSRIVIIEGIYALSEK 173 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~-~~p----~~d~-~~~~~~--------~~~~~~l---~~qRVlIaegl~aL~d~ 173 (465)
+||++.+++. |+.+|+.+....... ... .... ...+.. ......+ ..||+.|++++ .
T Consensus 82 ~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al-----~ 155 (229)
T cd03254 82 VLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAM-----L 155 (229)
T ss_pred ecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHH-----h
Confidence 9999988775 999999764321100 000 0000 000000 0001112 24999999999 8
Q ss_pred cCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 174 LRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
.+|.++++|||+++||+.....+. +.+. +|.|+ .+.+. .||+++.|.+|++...++..++
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~~~~~~ 224 (229)
T cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIK-NADKILVLDDGKIIEEGTHDEL 224 (229)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHh-hCCEEEEEeCCeEEEeCCHHHH
Confidence 999999999999999998766554 4443 47777 45565 4999999999999877765544
No 233
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.6e-23 Score=225.75 Aligned_cols=219 Identities=17% Similarity=0.195 Sum_probs=163.8
Q ss_pred CCCCCCccccccccceeeeeccC--cceeeceeeeeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHH
Q 012357 8 GADSPRRRPGLLRDQVQLVKKKD--SDRYEIVPIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVF 82 (465)
Q Consensus 8 ~~~~~~~~~~l~~~~~~l~~~~~--~k~y~~~~v~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL 82 (465)
++...+|...++..++++...-. ..+.+..--.+|++|.|.. .++++|+||++++|+ +++++||||+||||+
T Consensus 434 gvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe---~vALVGPSGsGKSTi 510 (716)
T KOG0058|consen 434 GVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGE---VVALVGPSGSGKSTI 510 (716)
T ss_pred hcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCC---EEEEECCCCCCHHHH
Confidence 44556788888888887766621 1134445567899999964 569999999999999 999999999999999
Q ss_pred HHHHHhcC-CCeeEEEECCeecC-------ccccccccCCCCCCccchHHHHHHhhhcccccc--------------ccc
Q 012357 83 TEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ--------------VPI 140 (465)
Q Consensus 83 ~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~--------------~p~ 140 (465)
+..|..+. |++|.|.+||.++. +++||++-|+|-+|. -|+.|||.+.......+ +..
T Consensus 511 asLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~ 589 (716)
T KOG0058|consen 511 ASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLDNATDEEIEAAAKMANAHEFITN 589 (716)
T ss_pred HHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh
Confidence 99999999 99999999999864 578999999999985 69999999875421100 000
Q ss_pred cccccccccCcc--ccc-cccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHH--HcCCCH------HH
Q 012357 141 YDFKSSSRIGYR--TLE-VPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ--RVGQEP------EE 209 (465)
Q Consensus 141 ~d~~~~~~~~~~--~~~-l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~--e~G~TI------~~ 209 (465)
+.......+|.+ .++ ..+||++||||+ .-+|.++++||.|++||.+-..-+..-+. -+|+|+ .+
T Consensus 590 ~p~gY~T~VGEkG~qLSGGQKQRIAIARAL-----lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLS 664 (716)
T KOG0058|consen 590 FPDGYNTVVGEKGSQLSGGQKQRIAIARAL-----LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLS 664 (716)
T ss_pred CccccccccCCccccccchHHHHHHHHHHH-----hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhh
Confidence 111111122211 111 235999999999 88999999999999999985443333332 236887 34
Q ss_pred HHHHHhceEEEccCcEEEecCCcceEE
Q 012357 210 IIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 210 vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.++ -+|+|.++++|++++.|.+.++.
T Consensus 665 TV~-~Ad~Ivvi~~G~V~E~G~h~eLl 690 (716)
T KOG0058|consen 665 TVR-HADQIVVIDKGRVVEMGTHDELL 690 (716)
T ss_pred Hhh-hccEEEEEcCCeEEecccHHHHh
Confidence 443 47999999999999999999885
No 234
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=2.3e-23 Score=192.65 Aligned_cols=199 Identities=16% Similarity=0.230 Sum_probs=151.5
Q ss_pred CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccccccCCCCC--
Q 012357 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRL-- 117 (465)
Q Consensus 48 g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~vfQ~p~l-- 117 (465)
..+.|++.|||++++|. .+||+|.||||||||+++|+|.+ |++|+|.+||.++. .+.|-|+||+|+.
T Consensus 24 ~~~~AV~~vSFtL~~~Q---TlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~ 100 (267)
T COG4167 24 QTVEAVKPVSFTLREGQ---TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSL 100 (267)
T ss_pred hhhhcccceEEEecCCc---EEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCcccc
Confidence 45679999999999999 99999999999999999999999 99999999998653 3679999999974
Q ss_pred CccchHHHHHHhhhcccc-ccccc---cccccccccCc---------ccc-ccccchhhhhHhHHhhhhccCcceeeeee
Q 012357 118 TDYDTLLENIRGLKEGKA-VQVPI---YDFKSSSRIGY---------RTL-EVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~~~-~~~p~---~d~~~~~~~~~---------~~~-~l~~qRVlIaegl~aL~d~~~p~LdllDE 183 (465)
.+...+.+.+..+.+... ...+. .-+....+++. ..+ ....|||++|+|+ .+.|.+.+.||
T Consensus 101 NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARAL-----IL~P~iIIaDe 175 (267)
T COG4167 101 NPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARAL-----ILRPKIIIADE 175 (267)
T ss_pred ChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHH-----hcCCcEEEehh
Confidence 444555555554432111 11000 00111222221 111 1234999999999 89999999999
Q ss_pred eecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEEeeCCCCCCCccCCcccc
Q 012357 184 VTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYI 253 (465)
Q Consensus 184 pts~LD~~l~rrIl---rdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~~p~~~~~~p~~i 253 (465)
.-++||.....+++ -++.++ |.+. ..+++.++|.|++|++|.+++.|+.+++ |..|
T Consensus 176 Al~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v-----------~a~P--- 241 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV-----------LASP--- 241 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhh-----------hcCC---
Confidence 99999998655544 566655 7776 7899999999999999999999999998 6677
Q ss_pred ccCCCcccHHHHHHHhcc
Q 012357 254 LKSTRPVTVDEIKAVMSK 271 (465)
Q Consensus 254 lk~~~~~~~~~i~~~l~~ 271 (465)
.+++|+.-|.+-+.+
T Consensus 242 ---~~~~TkRlieShFg~ 256 (267)
T COG4167 242 ---LHELTKRLIESHFGE 256 (267)
T ss_pred ---ccHHHHHHHHHHhcc
Confidence 888998888877755
No 235
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.89 E-value=1.4e-23 Score=233.92 Aligned_cols=188 Identities=13% Similarity=0.185 Sum_probs=146.4
Q ss_pred eeeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 39 IEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 39 v~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
-.++++|.|+ ...+|+|+||++++|+ .+||+|+||||||||++.|+|+. |++|.|.+||.++. ++.++
T Consensus 475 ~~~~vsf~y~~~~~iL~~isl~i~~G~---~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 475 VINDVSYSYGYGSNILSDISLTIKMNS---KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred EEEEEEEEcCCCCcceeceeEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE
Confidence 4578999996 4689999999999999 99999999999999999999999 99999999998753 46799
Q ss_pred cccCCCCCCccchHHHHHHhhh-cccc---ccc-----cccc------cccccccCc--cccc-cccchhhhhHhHHhhh
Q 012357 110 GNFDDPRLTDYDTLLENIRGLK-EGKA---VQV-----PIYD------FKSSSRIGY--RTLE-VPSSRIVIIEGIYALS 171 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~-~~~~---~~~-----p~~d------~~~~~~~~~--~~~~-l~~qRVlIaegl~aL~ 171 (465)
|++|++.+|+ .|+++||.+.. .... +.. ...+ ......++. ...+ ...||+.||||+
T Consensus 552 ~v~Q~~~lf~-gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARal---- 626 (708)
T TIGR01193 552 YLPQEPYIFS-GSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARAL---- 626 (708)
T ss_pred EEecCceehh-HHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHH----
Confidence 9999999886 49999998752 1110 000 0000 001111111 1111 134999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHHHHHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rrIlrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+....++.+.+.+ +|+|+ .+.+ ..||++++|++|++++.|+++++.
T Consensus 627 -l~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~-~~~D~i~~l~~G~i~~~G~~~~L~ 696 (708)
T TIGR01193 627 -LTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVA-KQSDKIIVLDHGKIIEQGSHDELL 696 (708)
T ss_pred -hhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 889999999999999999988877766654 47777 4544 569999999999999999998874
No 236
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.89 E-value=4.9e-23 Score=202.51 Aligned_cols=183 Identities=16% Similarity=0.165 Sum_probs=133.6
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~ 118 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.+++ +..++|+||++.++
T Consensus 7 ~~~l~~~~~~~~vl~~vs~~i~~Ge---~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----~~~i~~v~q~~~~~ 79 (251)
T PRK09544 7 LENVSVSFGQRRVLSDVSLELKPGK---ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----KLRIGYVPQKLYLD 79 (251)
T ss_pred EeceEEEECCceEEEeEEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----ccCEEEeccccccc
Confidence 4677888877789999999999999 99999999999999999999999 9999999987 34699999998776
Q ss_pred cc--chHHHHHHhhhcccccccc-cc-ccccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHH
Q 012357 119 DY--DTLLENIRGLKEGKAVQVP-IY-DFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD 191 (465)
Q Consensus 119 ~~--~tv~enL~~l~~~~~~~~p-~~-d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~ 191 (465)
+. .++.+++............ .. .+............+ ..||+.|++++ ...|.++++||||+++|+.
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral-----~~~p~lllLDEPt~~LD~~ 154 (251)
T PRK09544 80 TTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARAL-----LNRPQLLVLDEPTQGVDVN 154 (251)
T ss_pred cccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCCcCCCHH
Confidence 54 3666665432100000000 00 000000000011112 24999999999 8899999999999999998
Q ss_pred HHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 192 LVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 192 l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
.... +++++.++ |.|+ .+.+..+||+++++.+ .+...++..++
T Consensus 155 ~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 155 GQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 6554 45565555 8887 7788899999999965 68787776665
No 237
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.89 E-value=2.6e-23 Score=227.18 Aligned_cols=188 Identities=14% Similarity=0.120 Sum_probs=145.0
Q ss_pred eeeeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 39 IEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 39 v~~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
-.++++|.|+. ..+++++||++++|+ .+||+|+||||||||++.|+|+. |++|.|.+||.++. ++.++
T Consensus 342 ~~~~v~f~y~~~~~il~~i~l~i~~Ge---~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 342 DIDNVSFAYRDDNLVLQNINLSVPSRG---FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred EEEEEEEEeCCCCceeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 35789999853 679999999999999 99999999999999999999999 99999999999764 46799
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccc-------------cccccccccccCc--cccc-cccchhhhhHhHHhhhhc
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQV-------------PIYDFKSSSRIGY--RTLE-VPSSRIVIIEGIYALSEK 173 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~~-------------p~~d~~~~~~~~~--~~~~-l~~qRVlIaegl~aL~d~ 173 (465)
|++|+|.+|+. |+++||.........+. ..........++. ...+ ...||+.||||+ .
T Consensus 419 ~v~Q~~~lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaL-----l 492 (592)
T PRK10790 419 MVQQDPVVLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVL-----V 492 (592)
T ss_pred EEccCCccccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH-----H
Confidence 99999999974 99999987641100000 0000000111111 1111 134999999999 7
Q ss_pred cCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
-+|.++++||||+++|+...+++.+.+.+ +++|+ .+.+. .||+|++|++|++++.|++.++.
T Consensus 493 ~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 493 QTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHHHH
Confidence 79999999999999999988877766654 35666 44444 59999999999999999998874
No 238
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.89 E-value=8e-23 Score=188.76 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=124.8
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCC
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l 117 (465)
.+++++.|+ ...+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.+++. +.++|++|++.+
T Consensus 3 ~~~~~~~~~~~~~~l~~i~l~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----~~i~~~~q~~~~ 75 (166)
T cd03223 3 LENLSLATPDGRVLLKDLSFEIKPGD---RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----EDLLFLPQRPYL 75 (166)
T ss_pred EEEEEEEcCCCCeeeecCeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----ceEEEECCCCcc
Confidence 467888884 4679999999999999 99999999999999999999999 89999999874 579999999876
Q ss_pred CccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHH
Q 012357 118 TDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF 197 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIl 197 (465)
+ ..|+.+|+.+. .....++ ...||+.+++++ ..+|.++++||||+++|+...+++.
T Consensus 76 ~-~~tv~~nl~~~-------------~~~~LS~-----G~~~rv~laral-----~~~p~~lllDEPt~~LD~~~~~~l~ 131 (166)
T cd03223 76 P-LGTLREQLIYP-------------WDDVLSG-----GEQQRLAFARLL-----LHKPKFVFLDEATSALDEESEDRLY 131 (166)
T ss_pred c-cccHHHHhhcc-------------CCCCCCH-----HHHHHHHHHHHH-----HcCCCEEEEECCccccCHHHHHHHH
Confidence 5 56999998753 0111122 234899999999 8899999999999999999888777
Q ss_pred HHHHHcCCCH------HHHHHHHhceEEEccCc
Q 012357 198 RDIQRVGQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 198 rdl~e~G~TI------~~vi~~i~d~V~~m~~G 224 (465)
.-+.+.+.|+ .+.. .+||++++++++
T Consensus 132 ~~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~ 163 (166)
T cd03223 132 QLLKELGITVISVGHRPSLW-KFHDRVLDLDGE 163 (166)
T ss_pred HHHHHhCCEEEEEeCChhHH-hhCCEEEEEcCC
Confidence 6666657666 4443 589999888764
No 239
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.9e-23 Score=202.30 Aligned_cols=186 Identities=16% Similarity=0.112 Sum_probs=140.4
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.++.
T Consensus 10 ~~~l~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 10 VKDLSFYYNTSKAIEGISMDIYRNK---VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred EEEEEEEECCeEeecceEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 5788888888889999999999999 99999999999999999999998 4 4899999998652
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhcccc-ccccc---cccccccc----------cCcccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA-VQVPI---YDFKSSSR----------IGYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~-~~~p~---~d~~~~~~----------~~~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++ .|+.+|+.+...... ..... ......+. .......+ ..||+.|++++
T Consensus 87 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 165 (259)
T PRK14260 87 RRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL 165 (259)
T ss_pred hhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 235899999999887 899999976421100 00000 00000000 01011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEcc-----CcEEEecCCcc
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMY-----KAFIEPDLQTA 233 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~-----~G~I~~~g~~a 233 (465)
...|.++++||||+++|+.....+. +.+.+ +.|+ .+.+..+||++++|+ +|+++..++..
T Consensus 166 -----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 166 -----AIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTT 239 (259)
T ss_pred -----hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHH
Confidence 8899999999999999998655544 44443 5676 788899999999997 59999988877
Q ss_pred eE
Q 012357 234 HI 235 (465)
Q Consensus 234 DI 235 (465)
++
T Consensus 240 ~~ 241 (259)
T PRK14260 240 QI 241 (259)
T ss_pred HH
Confidence 76
No 240
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.89 E-value=3.3e-23 Score=225.66 Aligned_cols=188 Identities=14% Similarity=0.141 Sum_probs=145.9
Q ss_pred eeeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccc
Q 012357 39 IEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (465)
Q Consensus 39 v~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~i 108 (465)
-.++++|.|+. ..+++++||++++|+ .++|+|+||||||||+++|+|+. |++|.|.+||.++. ++.+
T Consensus 343 ~~~~vsf~y~~~~~~il~~i~l~i~~G~---~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 419 (582)
T PRK11176 343 EFRNVTFTYPGKEVPALRNINFKIPAGK---TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQV 419 (582)
T ss_pred EEEEEEEecCCCCCccccCceEEeCCCC---EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhc
Confidence 45789999953 679999999999999 99999999999999999999999 99999999998754 4679
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc----ccc-----------ccccccccccccCcccccc---ccchhhhhHhHHhh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGK----AVQ-----------VPIYDFKSSSRIGYRTLEV---PSSRIVIIEGIYAL 170 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~----~~~-----------~p~~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL 170 (465)
+|++|++.+|+ .|+++||.+..... .+. ...........++.....+ ..||+.|||++
T Consensus 420 ~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARal--- 495 (582)
T PRK11176 420 ALVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL--- 495 (582)
T ss_pred eEEccCceeec-chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHH---
Confidence 99999999886 69999998753211 000 0000001111111111112 34999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.-+|.++++||||+++|+....++.+.+.+ +++|+ .+.+ +.||+|+++++|++.+.|.++++.
T Consensus 496 --l~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~-~~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 496 --LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EKADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred --HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence 779999999999999999998888777654 36776 4444 459999999999999999988874
No 241
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.89 E-value=4.7e-23 Score=201.94 Aligned_cols=176 Identities=9% Similarity=0.078 Sum_probs=132.2
Q ss_pred EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------ccccccccCCCCCCccchHH
Q 012357 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLL 124 (465)
Q Consensus 52 aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~-------~~~ig~vfQ~p~l~~~~tv~ 124 (465)
+|+++||++++|+ ++||+|+||||||||+++|+|+.|.+|.|.++|.++. ++.++|+||++.+++..|+.
T Consensus 11 ~l~~vsl~i~~Ge---i~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGE---ILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 8999999999999 9999999999999999999999966999999998753 23589999998888888999
Q ss_pred HHHHhhhccc-cccc-cccccccccccCc------ccccc---ccchhhhhHhHHhhhhcc-------Ccceeeeeeeec
Q 012357 125 ENIRGLKEGK-AVQV-PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKL-------RPLIDLRVSVTG 186 (465)
Q Consensus 125 enL~~l~~~~-~~~~-p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~-------~p~LdllDEpts 186 (465)
+|+.+..... .... ...-....+..+. ....+ ..||+.|++++ .. .|.++++||||+
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~~~~~~p~p~llllDEPt~ 162 (248)
T PRK03695 88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVV-----LQVWPDINPAGQLLLLDEPMN 162 (248)
T ss_pred HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHH-----hccccccCCCCCEEEEcCCcc
Confidence 9998753211 0000 0000001111111 01112 24999999999 53 679999999999
Q ss_pred CccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 187 GVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 187 ~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
++|+...+. +++++.++|.|+ .+.+..+||++++|++|++...+...++
T Consensus 163 ~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 163 SLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999986554 446666668887 6778899999999999999888876655
No 242
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.89 E-value=3.6e-23 Score=223.44 Aligned_cols=188 Identities=15% Similarity=0.197 Sum_probs=142.4
Q ss_pred eeeeEeeeC-----------cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC----
Q 012357 40 EDTLSFEKG-----------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS---- 104 (465)
Q Consensus 40 ~~~ls~~~g-----------~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~---- 104 (465)
.+++++.|+ .+.+++++||++++|+ ++||+||||||||||+++|+|++|++|.|.++|.++.
T Consensus 278 ~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~ 354 (529)
T PRK15134 278 VEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGE---TLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNR 354 (529)
T ss_pred ccCcEEEeecCccccccccccceeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccch
Confidence 466777774 3679999999999999 9999999999999999999999988999999997653
Q ss_pred ------ccccccccCCC--CCCccchHHHHHHhhhc--ccccccccc---ccccccccCc-------ccccc---ccchh
Q 012357 105 ------SRIIDGNFDDP--RLTDYDTLLENIRGLKE--GKAVQVPIY---DFKSSSRIGY-------RTLEV---PSSRI 161 (465)
Q Consensus 105 ------~~~ig~vfQ~p--~l~~~~tv~enL~~l~~--~~~~~~p~~---d~~~~~~~~~-------~~~~l---~~qRV 161 (465)
++.++|+||++ .+++..|+.+|+.+... +........ -....+..+. ....+ ..|||
T Consensus 355 ~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 434 (529)
T PRK15134 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI 434 (529)
T ss_pred hhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH
Confidence 24589999997 37778899999986421 100000000 0000111111 11112 23999
Q ss_pred hhhHhHHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCC
Q 012357 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (465)
Q Consensus 162 lIaegl~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~ 231 (465)
.||+++ ...|.++++||||+++|+...+. ++++++++ |.|+ ++.+..+||++++|++|++...++
T Consensus 435 ~la~al-----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 509 (529)
T PRK15134 435 AIARAL-----ILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGD 509 (529)
T ss_pred HHHHHH-----hCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcC
Confidence 999999 89999999999999999997554 45666554 8887 778889999999999999999888
Q ss_pred cceE
Q 012357 232 TAHI 235 (465)
Q Consensus 232 ~aDI 235 (465)
..++
T Consensus 510 ~~~~ 513 (529)
T PRK15134 510 CERV 513 (529)
T ss_pred HHHH
Confidence 7776
No 243
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=200.42 Aligned_cols=188 Identities=13% Similarity=0.164 Sum_probs=140.7
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECC------eecC-------
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN------YNDS------- 104 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg------~~~~------- 104 (465)
-.+++++.|+...+++++||.+.+|+ ++||+|+||||||||+++|+|+. |++|.|.++| .+..
T Consensus 12 ~~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~ 88 (257)
T PRK14246 12 NISRLYLYINDKAILKDITIKIPNNS---IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKL 88 (257)
T ss_pred eeeeEEEecCCceeEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHH
Confidence 34778888988899999999999999 99999999999999999999999 8887766665 3321
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhcccccccc-cc--------c-cccc----cccCcccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP-IY--------D-FKSS----SRIGYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p-~~--------d-~~~~----~~~~~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++..|+.+|+.+.........+ .. + +... .........+ ..||+.|++++
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 168 (257)
T PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARAL 168 (257)
T ss_pred hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 34689999999998888999999864321100000 00 0 0010 0001011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.+.++||||+++|+.....+ ++++.+ +.|+ .+.+..+||++++|++|++.+.|...++
T Consensus 169 -----~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 169 -----ALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred -----HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 899999999999999999875544 454443 5677 7788899999999999999998887765
No 244
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.4e-23 Score=203.17 Aligned_cols=191 Identities=15% Similarity=0.137 Sum_probs=149.7
Q ss_pred eeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------ccccccccCCCCCCccch
Q 012357 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPRLTDYDT 122 (465)
Q Consensus 55 ~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----------~~~ig~vfQ~p~l~~~~t 122 (465)
+++|..+... +.+|-|+||||||||+++|+|+. |+.|.|.++|.-+. ++++||+||+..+|+++|
T Consensus 16 ~a~~~~p~~G---vTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARG---ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCc---eEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 5677777767 99999999999999999999999 99999999998431 578999999999999999
Q ss_pred HHHHHHhhhccccccccccccc--------cccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHH
Q 012357 123 LLENIRGLKEGKAVQVPIYDFK--------SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVK 194 (465)
Q Consensus 123 v~enL~~l~~~~~~~~p~~d~~--------~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~r 194 (465)
|+.|+.+...... ...++.- ..++.+..-.-.+.|||+|.+|+ ...|.++++|||-++||....+
T Consensus 93 VrgNL~YG~~~~~--~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRAL-----Lt~P~LLLmDEPLaSLD~~RK~ 165 (352)
T COG4148 93 VRGNLRYGMWKSM--RAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRAL-----LTAPELLLMDEPLASLDLPRKR 165 (352)
T ss_pred Eecchhhhhcccc--hHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHH-----hcCCCeeeecCchhhcccchhh
Confidence 9999998754321 1111110 11121111111245999999999 7899999999999999998777
Q ss_pred HHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEEeeCCCCCCCccCCcccccc
Q 012357 195 RVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILK 255 (465)
Q Consensus 195 rIl---rdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~~p~~~~~~p~~ilk 255 (465)
+++ ..+.++ ...| ++.+.+++|+|.+|++|++...|..+++.-...|.|+....+.-.+++
T Consensus 166 EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~~~~p~~~~~e~~~vl~ 236 (352)
T COG4148 166 EILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFPPWLPREEQSSVLE 236 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCcccCcccCccccceEEE
Confidence 766 555544 5555 788999999999999999999999999986667889888777655444
No 245
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.3e-23 Score=203.22 Aligned_cols=187 Identities=11% Similarity=0.115 Sum_probs=134.9
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----ccccccccC
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----~~~ig~vfQ 113 (465)
.+++++.|+ ...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+||
T Consensus 9 ~~~l~~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 9 VNDVTVTWRNGHTALRDASFTVPGGS---IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred EEeEEEEecCCcEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 467788884 5789999999999999 99999999999999999999999 99999999998753 235899999
Q ss_pred CCCCC--ccchHHHHHHhhhccc-cc-ccc-----ccccccccccCc------ccccc---ccchhhhhHhHHhhhhccC
Q 012357 114 DPRLT--DYDTLLENIRGLKEGK-AV-QVP-----IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 114 ~p~l~--~~~tv~enL~~l~~~~-~~-~~p-----~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
++.+. ...++.+++....... .. ..+ .......+..+. ....+ ..||+.|++++ ..+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL-----~~~ 160 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAI-----AQQ 160 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH-----hcC
Confidence 98652 2235666664321000 00 000 000000111111 11112 23999999999 889
Q ss_pred cceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 176 PLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|.++++||||+++|+..... ++++++++|.|+ .+.+..+||+++.+ +|++...++..++
T Consensus 161 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 161 GQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 99999999999999986554 456666668887 67788999999766 8999888876665
No 246
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.89 E-value=3.7e-23 Score=230.71 Aligned_cols=189 Identities=15% Similarity=0.161 Sum_probs=145.7
Q ss_pred eeeeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cc
Q 012357 38 PIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (465)
Q Consensus 38 ~v~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~ 106 (465)
--.++++|.|+. ..+|+|+||++++|+ .++|+||||||||||++.|.|+. |++|.|.+||.++. ++
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge---~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGE---VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 346789999963 579999999999999 99999999999999999999999 99999999998764 46
Q ss_pred ccccccCCCCCCccchHHHHHHhhhcccc---cc-------c----cccccccccccCc--cccc-cccchhhhhHhHHh
Q 012357 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKA---VQ-------V----PIYDFKSSSRIGY--RTLE-VPSSRIVIIEGIYA 169 (465)
Q Consensus 107 ~ig~vfQ~p~l~~~~tv~enL~~l~~~~~---~~-------~----p~~d~~~~~~~~~--~~~~-l~~qRVlIaegl~a 169 (465)
.++|++|+|.+|+ .|+++||.+...... +. . ..........++. ...+ ...||+.|||++
T Consensus 556 ~i~~v~Q~~~lF~-gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARAL-- 632 (711)
T TIGR00958 556 QVALVGQEPVLFS-GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARAL-- 632 (711)
T ss_pred hceEEecCccccc-cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHH--
Confidence 7999999999886 699999987542211 00 0 0000001111111 1111 234999999999
Q ss_pred hhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 170 L~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.-+|.++++||||+++|+.....+.+....+++|+ .+.+. .||+|+++++|+|++.|++.++.
T Consensus 633 ---l~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 633 ---VRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQLM 701 (711)
T ss_pred ---hcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEeeCHHHHH
Confidence 78999999999999999998777776333357887 45554 59999999999999999998874
No 247
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=8.7e-23 Score=201.73 Aligned_cols=187 Identities=17% Similarity=0.161 Sum_probs=140.3
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC--------
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------- 104 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~-------- 104 (465)
..+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|+. | ++|.|.++|.+..
T Consensus 18 ~~~~l~~~~~~~~vl~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~ 94 (265)
T PRK14252 18 EVNKLNFYYGGYQALKNINMMVHEKQ---VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDP 94 (265)
T ss_pred EEEEEEEEECCeeeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCH
Confidence 35788888888889999999999999 99999999999999999999998 5 6999999986431
Q ss_pred ---ccccccccCCCCCCccchHHHHHHhhhcccccccc-----c----cc-cccc----cccCcccccc---ccchhhhh
Q 012357 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP-----I----YD-FKSS----SRIGYRTLEV---PSSRIVII 164 (465)
Q Consensus 105 ---~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p-----~----~d-~~~~----~~~~~~~~~l---~~qRVlIa 164 (465)
++.++|+||++.+++. ++.+|+.+.......... . .+ .... .........+ ..||+.|+
T Consensus 95 ~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 173 (265)
T PRK14252 95 IEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIA 173 (265)
T ss_pred HHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHH
Confidence 3458999999998885 999999764211000000 0 00 0000 0000011112 24999999
Q ss_pred HhHHhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 165 egl~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+++ ..+|.+.++||||+++|+.....+. +++.+ +.|+ .+.+.++||+++++++|++...+...++
T Consensus 174 ral-----~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 174 RAL-----ATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred HHH-----HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999 8899999999999999998755544 55443 5666 6778899999999999999988877665
No 248
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.5e-22 Score=202.62 Aligned_cols=186 Identities=16% Similarity=0.117 Sum_probs=138.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------P~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++.
T Consensus 42 i~~l~~~~~~~~il~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~ 118 (285)
T PRK14254 42 ARDLNVFYGDEQALDDVSMDIPENQ---VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVAL 118 (285)
T ss_pred EEEEEEEECCEeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhh
Confidence 4678888887889999999999999 99999999999999999999997 37999999998752
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhcccccc--ccccccccccccC----------cccccc---ccchhhhhHhHHh
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ--VPIYDFKSSSRIG----------YRTLEV---PSSRIVIIEGIYA 169 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~--~p~~d~~~~~~~~----------~~~~~l---~~qRVlIaegl~a 169 (465)
++.++|+||++.+++. ++.+|+.+........ ....-....+..+ .....+ ..||+.|++++
T Consensus 119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL-- 195 (285)
T PRK14254 119 RRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAI-- 195 (285)
T ss_pred hccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHH--
Confidence 3468999999988875 9999997643211000 0000000001111 011112 24999999999
Q ss_pred hhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEE-EccCcEEEecCCcceE
Q 012357 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVY-PMYKAFIEPDLQTAHI 235 (465)
Q Consensus 170 L~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~-~m~~G~I~~~g~~aDI 235 (465)
..+|.++++|||+++||+.....+. +++.+ +.|+ .+.+..+||+++ ++++|++...+...++
T Consensus 196 ---~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 196 ---APDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred ---HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 8899999999999999998765544 55544 4566 678889999975 5799999888776654
No 249
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.89 E-value=1.8e-22 Score=197.44 Aligned_cols=186 Identities=13% Similarity=0.112 Sum_probs=139.1
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc--C-CCeeEEEECCeecCc------c--cc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS------R--II 108 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl--l-P~sG~I~lDg~~~~~------~--~i 108 (465)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|+ . |++|.|.++|.++.. . .+
T Consensus 10 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 86 (252)
T CHL00131 10 IKNLHASVNENEILKGLNLSINKGE---IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGI 86 (252)
T ss_pred EEeEEEEeCCEEeeecceeEEcCCc---EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeE
Confidence 5678888877789999999999999 9999999999999999999997 4 799999999987531 1 36
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc-------ccccccc-c--cccccccCc-------ccc-ccc---cchhhhhHhH
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGK-------AVQVPIY-D--FKSSSRIGY-------RTL-EVP---SSRIVIIEGI 167 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~-------~~~~p~~-d--~~~~~~~~~-------~~~-~l~---~qRVlIaegl 167 (465)
+++||++.+++..++.+++....... ......+ . ....+..+. ... .++ .||+.|++++
T Consensus 87 ~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al 166 (252)
T CHL00131 87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMA 166 (252)
T ss_pred EEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHH
Confidence 78999999998889999886532110 0000000 0 000111111 011 122 4999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHH-hceEEEccCcEEEecCCcc
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQI-SETVYPMYKAFIEPDLQTA 233 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i-~d~V~~m~~G~I~~~g~~a 233 (465)
..+|.++++||||+++|+...+.+ ++++.++|.|+ .+.+..+ ||+++++++|++...++..
T Consensus 167 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 167 -----LLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred -----HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 899999999999999999876554 45665568887 5667776 8999999999999887665
No 250
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.3e-22 Score=198.37 Aligned_cols=186 Identities=15% Similarity=0.148 Sum_probs=140.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC---C---CeeEEEECCeecC---------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---P---~sG~I~lDg~~~~--------- 104 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. | ++|.|.+||.++.
T Consensus 6 ~~~v~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 6 VENLNTYFDDAHILKNVNLDIPKNS---VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEeEEEEeCCeEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 4678888887889999999999999 99999999999999999999985 3 7899999998753
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccc-c---cccc------cccc----ccccCcccccc---ccchhhhhHhH
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV-Q---VPIY------DFKS----SSRIGYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~-~---~p~~------d~~~----~~~~~~~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++. ++.+|+.+....... . .... .... ..........+ ..||+.|++++
T Consensus 83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 2468999999988874 999999764211100 0 0000 0000 00001011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++|||++++|+.....+ ++++. +|.|+ .+.+..+||++.++++|++...++..++
T Consensus 162 -----~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 162 -----AVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred -----HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 889999999999999999865554 45553 36777 7788999999999999999988877665
No 251
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.89 E-value=1.5e-22 Score=188.96 Aligned_cols=159 Identities=21% Similarity=0.264 Sum_probs=121.2
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc-------ccccccc
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~-------~~ig~vf 112 (465)
+++++.|+...+++++||++.+|+ +++|+|+||||||||+++|+|+. |++|.|.++|.+... +.++|+|
T Consensus 3 ~~l~~~~~~~~~l~~~~~~i~~G~---~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 3 ENLSVGYGGRTVLDDLSLSIEAGE---IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred eEEEEEECCeeeEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 578888887889999999999999 99999999999999999999999 999999999987632 3467777
Q ss_pred CCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHH
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l 192 (465)
| .+..+. .. ...+......++ ...||+.|++++ ..+|.+.++||||+++|+..
T Consensus 80 q------------~l~~~g----l~-~~~~~~~~~LS~-----G~~qrl~laral-----~~~p~llllDEP~~~LD~~~ 132 (180)
T cd03214 80 Q------------ALELLG----LA-HLADRPFNELSG-----GERQRVLLARAL-----AQEPPILLLDEPTSHLDIAH 132 (180)
T ss_pred H------------HHHHcC----CH-hHhcCCcccCCH-----HHHHHHHHHHHH-----hcCCCEEEEeCCccCCCHHH
Confidence 7 111110 00 000001111111 234899999999 88999999999999999986
Q ss_pred HHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEec
Q 012357 193 VKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPD 229 (465)
Q Consensus 193 ~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~ 229 (465)
... +++.++++ |.|+ .+.+.++||+++++++|++...
T Consensus 133 ~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 133 QIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 554 45566555 7777 6777889999999999998754
No 252
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.89 E-value=5.7e-23 Score=228.48 Aligned_cols=189 Identities=19% Similarity=0.177 Sum_probs=146.3
Q ss_pred eeeeeeEeeeC--cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 38 PIEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 38 ~v~~~ls~~~g--~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
--.++++|.|+ ..++|+++||++++|+ .++|+|+||||||||++.|+|+. |++|.|.+||.++. ++.
T Consensus 464 I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~---~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 464 IEFRNVSFAYPGQETPALDNVSLTIRPGE---KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred EEEEEEEEEeCCCCccceeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 34678999995 3579999999999999 99999999999999999999999 99999999998764 467
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccc---cc-------c----cccccccccccCc--cccc-cccchhhhhHhHHhh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKA---VQ-------V----PIYDFKSSSRIGY--RTLE-VPSSRIVIIEGIYAL 170 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~---~~-------~----p~~d~~~~~~~~~--~~~~-l~~qRVlIaegl~aL 170 (465)
+++++|++.+|+ .|+++||........ +. . ..........++. ...+ ...||+.|||++
T Consensus 541 i~~v~Q~~~lf~-~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARal--- 616 (694)
T TIGR03375 541 IGYVPQDPRLFY-GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL--- 616 (694)
T ss_pred cEEECCChhhhh-hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH---
Confidence 999999999886 599999987532110 00 0 0000011111111 1111 134999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.-+|.++++||||+++|+....++.+.+.+ +++|+ .+.+ ..||+|++|++|++++.|++.+++
T Consensus 617 --l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~-~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 617 --LRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLL-DLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred --hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HhCCEEEEEeCCEEEeeCCHHHHH
Confidence 789999999999999999988887766654 36776 5555 579999999999999999988763
No 253
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.89 E-value=5.6e-23 Score=224.06 Aligned_cols=189 Identities=13% Similarity=0.096 Sum_probs=146.2
Q ss_pred eeeeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 38 PIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 38 ~v~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
--.++++|.|+. ..+|+++||++++|+ .++|+||||||||||+++|+|+. |++|.|.+||.++. ++.
T Consensus 339 i~~~~v~f~y~~~~~~il~~i~~~i~~G~---~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGE---KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred EEEEEEEEECCCCCCcceecceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 356889999953 579999999999999 99999999999999999999999 99999999999754 467
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccc---ccc-----ccccc-----ccccccCcccccc---ccchhhhhHhHHhhh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKA---VQV-----PIYDF-----KSSSRIGYRTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~---~~~-----p~~d~-----~~~~~~~~~~~~l---~~qRVlIaegl~aL~ 171 (465)
+++++|++.+|+ .|+++|+.+...... +.. ...++ .....++..-..+ ..||+.|||++
T Consensus 416 i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARal---- 490 (574)
T PRK11160 416 ISVVSQRVHLFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARAL---- 490 (574)
T ss_pred eeEEcccchhhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHH----
Confidence 999999999886 599999987542110 000 00000 0111111111112 34999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+....++.+.+.+ +|+|+ .+.+. .||++++|++|++.+.|+++++.
T Consensus 491 -l~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 491 -LHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE-QFDRICVMDNGQIIEQGTHQELL 561 (574)
T ss_pred -hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHH-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 889999999999999999988877766654 37776 45554 49999999999999999988874
No 254
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=219.58 Aligned_cols=184 Identities=13% Similarity=0.115 Sum_probs=142.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~ 118 (465)
.+++++.|+..++++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|. ..++|++|++.++
T Consensus 4 i~~ls~~~~~~~il~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----~~i~~~~q~~~~~ 76 (530)
T PRK15064 4 TANITMQFGAKPLFENISVKFGGGN---RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----ERLGKLRQDQFAF 76 (530)
T ss_pred EEEEEEEeCCcEeEeCCEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----CEEEEEeccCCcC
Confidence 4678888988889999999999999 99999999999999999999999 89999999873 4589999999888
Q ss_pred ccchHHHHHHhhhccc--------c-cccc---------------------ccc--c---ccccccCcc-------cccc
Q 012357 119 DYDTLLENIRGLKEGK--------A-VQVP---------------------IYD--F---KSSSRIGYR-------TLEV 156 (465)
Q Consensus 119 ~~~tv~enL~~l~~~~--------~-~~~p---------------------~~d--~---~~~~~~~~~-------~~~l 156 (465)
+..|+.+++.+..... . ...+ .++ . ...+.++.. ...+
T Consensus 77 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 156 (530)
T PRK15064 77 EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEV 156 (530)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhc
Confidence 8899999987531000 0 0000 000 0 001111111 0112
Q ss_pred ---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEE
Q 012357 157 ---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIE 227 (465)
Q Consensus 157 ---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~ 227 (465)
..|||.||+++ ..+|.++++||||++||+.....+...+.+.|.|+ .+.+.++||+++.+++|++.
T Consensus 157 SgGq~qrv~lA~aL-----~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~ 231 (530)
T PRK15064 157 APGWKLRVLLAQAL-----FSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELR 231 (530)
T ss_pred CHHHHHHHHHHHHH-----hcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence 23999999999 88999999999999999999888887777778887 77889999999999999984
Q ss_pred -ecCCcceE
Q 012357 228 -PDLQTAHI 235 (465)
Q Consensus 228 -~~g~~aDI 235 (465)
..|+..++
T Consensus 232 ~~~g~~~~~ 240 (530)
T PRK15064 232 VYPGNYDEY 240 (530)
T ss_pred EecCCHHHH
Confidence 56765554
No 255
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.9e-23 Score=221.24 Aligned_cols=187 Identities=15% Similarity=0.121 Sum_probs=139.9
Q ss_pred eeeeEeee---CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-CeeEEEECCeecC--------cc
Q 012357 40 EDTLSFEK---GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYNDS--------SR 106 (465)
Q Consensus 40 ~~~ls~~~---g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-~sG~I~lDg~~~~--------~~ 106 (465)
.+++++.| +...+++++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.++. ++
T Consensus 262 ~~~l~~~~~~~~~~~vl~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 262 VRNLTAWDPVNPHIKRVDDVSFSLRRGE---ILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred EecCccccccccccccccceeeEEcCCc---EEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 45677777 34679999999999999 99999999999999999999998 4 8999999998653 23
Q ss_pred ccccccCCC---CCCccchHHHHHHhhhc--ccc---cccc---ccccccccccCc-------ccccc---ccchhhhhH
Q 012357 107 IIDGNFDDP---RLTDYDTLLENIRGLKE--GKA---VQVP---IYDFKSSSRIGY-------RTLEV---PSSRIVIIE 165 (465)
Q Consensus 107 ~ig~vfQ~p---~l~~~~tv~enL~~l~~--~~~---~~~p---~~d~~~~~~~~~-------~~~~l---~~qRVlIae 165 (465)
.++|+||++ .+++..|+.+|+.+... ... .... ..-....++.+. ....+ ..|||.||+
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~ 418 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAK 418 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHH
Confidence 589999996 46778899999975321 000 0000 000000111111 01112 249999999
Q ss_pred hHHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcce
Q 012357 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (465)
Q Consensus 166 gl~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aD 234 (465)
++ ...|.++++||||++||+...+. ++++++++|.|+ ++.+.++||++++|++|++...++..+
T Consensus 419 al-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 419 CL-----LLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HH-----hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99 88999999999999999986554 556777778888 788899999999999999987665544
No 256
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.89 E-value=7e-23 Score=220.65 Aligned_cols=188 Identities=17% Similarity=0.172 Sum_probs=140.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC---CCeeEEEEC-----------------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMD----------------- 99 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---P~sG~I~lD----------------- 99 (465)
.+++++.|+...+++++||++.+|+ ++||+||||||||||+++|+|++ |++|.|.++
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGE---VLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred EEEEEEEECCeEeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 4678889988889999999999999 99999999999999999999994 889999997
Q ss_pred ------Ceec-----------------CccccccccCC-CCCCccchHHHHHHhhhccccccccccc---cccccccCc-
Q 012357 100 ------NYND-----------------SSRIIDGNFDD-PRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY- 151 (465)
Q Consensus 100 ------g~~~-----------------~~~~ig~vfQ~-p~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~- 151 (465)
|.++ .++.++|+||+ +.+++..++.+|+.+............. ....+.++.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 2111 12458999997 6788888999999864321111000000 001111111
Q ss_pred -----ccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHH-cCCCH------HHHHHH
Q 012357 152 -----RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQR-VGQEP------EEIIHQ 213 (465)
Q Consensus 152 -----~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e-~G~TI------~~vi~~ 213 (465)
....+ ..|||.||+++ ..+|.++++||||++||+....++ ++++.+ .|.|+ .+.+.+
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~ 234 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQL-----AKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIED 234 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHH-----hcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence 11112 23999999999 899999999999999999976665 566654 48887 677889
Q ss_pred HhceEEEccCcEEEecCCcceE
Q 012357 214 ISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 214 i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+||+++.|++|++...|...++
T Consensus 235 ~~d~i~~l~~G~i~~~g~~~~~ 256 (520)
T TIGR03269 235 LSDKAIWLENGEIKEEGTPDEV 256 (520)
T ss_pred hcCEEEEEeCCEEeeecCHHHH
Confidence 9999999999999887766554
No 257
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.89 E-value=1.1e-22 Score=219.65 Aligned_cols=188 Identities=16% Similarity=0.232 Sum_probs=139.9
Q ss_pred eeeeEeeeC----cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC-----
Q 012357 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS----- 104 (465)
Q Consensus 40 ~~~ls~~~g----~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~----- 104 (465)
.+++++.|+ ...+++++||++.+|+ ++||+||||||||||+++|+|++ | ++|.|.++|.++.
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~isl~i~~Ge---~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGE---TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred EeceEEEecCCCCceeeeeceEEEEeCCC---EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 356777775 2679999999999999 99999999999999999999999 5 6999999998642
Q ss_pred ------ccccccccCCCC--CCccchHHHHHHhhhcc-cccccccc-c--cccccccCc---------ccccc---ccch
Q 012357 105 ------SRIIDGNFDDPR--LTDYDTLLENIRGLKEG-KAVQVPIY-D--FKSSSRIGY---------RTLEV---PSSR 160 (465)
Q Consensus 105 ------~~~ig~vfQ~p~--l~~~~tv~enL~~l~~~-~~~~~p~~-d--~~~~~~~~~---------~~~~l---~~qR 160 (465)
++.++|+||++. +++..++.+++...... ........ . ....+.++. ....+ ..||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr 164 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR 164 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH
Confidence 136899999985 56677888888653210 00000000 0 001111111 01112 2399
Q ss_pred hhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 161 VlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
|.||+++ ..+|.++++||||++||+...+.+ +++++++ |.|+ .+.+..+||++++|++|++...+
T Consensus 165 v~iAraL-----~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g 239 (529)
T PRK15134 165 VMIAMAL-----LTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239 (529)
T ss_pred HHHHHHH-----hcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeC
Confidence 9999999 899999999999999999976554 5666554 8887 67788999999999999999888
Q ss_pred CcceE
Q 012357 231 QTAHI 235 (465)
Q Consensus 231 ~~aDI 235 (465)
...++
T Consensus 240 ~~~~~ 244 (529)
T PRK15134 240 RAATL 244 (529)
T ss_pred CHHHH
Confidence 87766
No 258
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=1.5e-22 Score=192.47 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=119.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vf 112 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.+++++
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 4 ARNLACERDERILFSGLSFTLNAGE---LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred EEEEEEEECCEEEEecceEEECCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 3678888888889999999999999 99999999999999999999999 99999999998753 34689999
Q ss_pred CCCCCCccchHHHHHHhhhccccccccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVS 183 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDE 183 (465)
|++.+++..|+.+|+..............-....+..+. ....+ ..||+.|++++ ..+|.++++||
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al-----~~~p~llllDE 155 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLW-----LTRAPLWILDE 155 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH-----hcCCCEEEEeC
Confidence 999888889999999875321110000000001111111 11112 24999999999 89999999999
Q ss_pred eecCccHHHHHHH---HHHHHHcCCCH
Q 012357 184 VTGGVHFDLVKRV---FRDIQRVGQEP 207 (465)
Q Consensus 184 pts~LD~~l~rrI---lrdl~e~G~TI 207 (465)
||+++|+.....+ ++++.++|.|+
T Consensus 156 Pt~~LD~~~~~~l~~~l~~~~~~~~ti 182 (204)
T PRK13538 156 PFTAIDKQGVARLEALLAQHAEQGGMV 182 (204)
T ss_pred CCccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 9999999875554 45555557776
No 259
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=1.2e-22 Score=194.80 Aligned_cols=182 Identities=14% Similarity=0.100 Sum_probs=132.6
Q ss_pred eeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
.+++++.|+. ..+++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.++|.++. ++.++
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 5 FKNVSLRYRPNLPPVLKNISFSIKPGE---KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred EEEEEEecCCCCcccccceEEEECCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 4677887753 479999999999999 99999999999999999999999 99999999998753 35689
Q ss_pred cccCCCCCCccchHHHHHHhhhcccccccc-ccc-ccccccc-----------Ccccccc---ccchhhhhHhHHhhhhc
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVP-IYD-FKSSSRI-----------GYRTLEV---PSSRIVIIEGIYALSEK 173 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p-~~d-~~~~~~~-----------~~~~~~l---~~qRVlIaegl~aL~d~ 173 (465)
|+||++.+++ .|+.+|+............ ..+ ....... ......+ ..||+.|++++ .
T Consensus 82 ~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral-----~ 155 (221)
T cd03244 82 IIPQDPVLFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL-----L 155 (221)
T ss_pred EECCCCcccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH-----h
Confidence 9999998776 5999998643211000000 000 0000000 0011112 24999999999 8
Q ss_pred cCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCC
Q 012357 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~ 231 (465)
.+|.++++|||++++|+.....+.+-+.+ ++.|+ .+.+.. ||++++|.+|++...++
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 156 RKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence 99999999999999999976655544432 35666 455554 99999999999887654
No 260
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.88 E-value=6.9e-23 Score=219.12 Aligned_cols=188 Identities=9% Similarity=0.062 Sum_probs=136.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~v 111 (465)
.+++++.|+...+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++++
T Consensus 6 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 6 ISQGTFRLSDTKTLQLPSLTLNAGD---SWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred EEeEEEEcCCeeecccceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 4678888887789999999999999 99999999999999999999999 89999999987542 2348999
Q ss_pred cCCCCC--C------ccchHHHHHHhhhcc-ccccccccccccccccCcccccc---ccchhhhhHhHHhhhhccCccee
Q 012357 112 FDDPRL--T------DYDTLLENIRGLKEG-KAVQVPIYDFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLID 179 (465)
Q Consensus 112 fQ~p~l--~------~~~tv~enL~~l~~~-~~~~~p~~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~Ld 179 (465)
||++.. + ...++.+++...... .....-...+............+ ..|||.||+++ ..+|.++
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al-----~~~p~ll 157 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQAL-----MSEPDLL 157 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHH-----HcCCCEE
Confidence 998653 1 135677765421100 00000000000000000011112 34999999999 8899999
Q ss_pred eeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 180 LRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 180 llDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
++||||++||+...+. +++++.++|.|+ .+.+.++||++++|++|+++..+...++
T Consensus 158 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 158 ILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999987554 456666668887 6788899999999999999988876654
No 261
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.88 E-value=8.4e-23 Score=197.67 Aligned_cols=176 Identities=17% Similarity=0.254 Sum_probs=130.7
Q ss_pred EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C----CeeEEEECCeecC-----ccccccccCCCC--CCc
Q 012357 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDS-----SRIIDGNFDDPR--LTD 119 (465)
Q Consensus 52 aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P----~sG~I~lDg~~~~-----~~~ig~vfQ~p~--l~~ 119 (465)
+++++||++++|+ +++|+||||||||||+++|+|++ | ++|.|.++|.++. ++.++|++|++. +++
T Consensus 1 ~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGE---VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 4789999999999 99999999999999999999999 7 8999999998753 246999999985 445
Q ss_pred cchHHHHHHhhhc--cccccc-cccccccccccCc---------ccccc---ccchhhhhHhHHhhhhccCcceeeeeee
Q 012357 120 YDTLLENIRGLKE--GKAVQV-PIYDFKSSSRIGY---------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (465)
Q Consensus 120 ~~tv~enL~~l~~--~~~~~~-p~~d~~~~~~~~~---------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEp 184 (465)
..++.+++.+... +..... ...-....+..+. ....+ ..|||.|++++ ..+|.++++|||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral-----~~~p~vllLDEP 152 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALAL-----LLEPPFLIADEP 152 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHH-----hcCCCEEEEcCC
Confidence 6788888765321 110000 0000000011110 11112 24999999999 889999999999
Q ss_pred ecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 185 TGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 185 ts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|+++|+.... ++++++.++ |.|+ .+.+..+||++++|.+|++...+...++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 213 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999998654 445666554 7787 6778899999999999999988876665
No 262
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.88 E-value=1.5e-22 Score=197.50 Aligned_cols=186 Identities=15% Similarity=0.159 Sum_probs=134.4
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc--C-CCeeEEEECCeecC--------cccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDS--------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl--l-P~sG~I~lDg~~~~--------~~~i 108 (465)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|+ + |++|.|.++|.+.. ++.+
T Consensus 4 ~~nl~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 4 IKDLHVSVEDKAILRGLNLEVRPGE---VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred EEEEEEEeCCeeeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 4678888887889999999999999 9999999999999999999999 4 88999999997653 1358
Q ss_pred ccccCCCCCCccchHHHHHHhhhcc----cccc-cccccc-----ccccccCc------ccc--cc---ccchhhhhHhH
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEG----KAVQ-VPIYDF-----KSSSRIGY------RTL--EV---PSSRIVIIEGI 167 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~----~~~~-~p~~d~-----~~~~~~~~------~~~--~l---~~qRVlIaegl 167 (465)
+|++|++.+++..+...++...... .... ...... ...+..+. ... .+ ..||+.|++++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 8999998877766655444322110 0000 000000 00000000 000 12 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHH-hceEEEccCcEEEecCCcc
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQI-SETVYPMYKAFIEPDLQTA 233 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i-~d~V~~m~~G~I~~~g~~a 233 (465)
...|.++++||||+++|+.....+. +.+++.|.|+ .+.+..+ ||+++.+++|++...++.+
T Consensus 161 -----~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 161 -----VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred -----HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 8899999999999999998765554 5666667787 5667776 8999999999998776544
No 263
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.88 E-value=1.1e-22 Score=219.11 Aligned_cols=188 Identities=15% Similarity=0.147 Sum_probs=139.0
Q ss_pred eeeeEeeeC-----cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEEC-Cee---c------
Q 012357 40 EDTLSFEKG-----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD-NYN---D------ 103 (465)
Q Consensus 40 ~~~ls~~~g-----~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lD-g~~---~------ 103 (465)
.+++++.|+ ...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++ |.. .
T Consensus 282 ~~~l~~~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGE---IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred EeccEEEeccCCCCCceEEeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 466777773 3579999999999999 99999999999999999999999 899999995 521 1
Q ss_pred ----CccccccccCCCCCCccchHHHHHHhhhc-ccccc-ccccccccccccCc-----------ccccc---ccchhhh
Q 012357 104 ----SSRIIDGNFDDPRLTDYDTLLENIRGLKE-GKAVQ-VPIYDFKSSSRIGY-----------RTLEV---PSSRIVI 163 (465)
Q Consensus 104 ----~~~~ig~vfQ~p~l~~~~tv~enL~~l~~-~~~~~-~p~~d~~~~~~~~~-----------~~~~l---~~qRVlI 163 (465)
.++.++|+||++.+++..|+.+|+.+... ..... ....-....+..+. ....+ ..|||.|
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~l 438 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVAL 438 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHH
Confidence 12458999999999998999999976321 00000 00000000111111 11112 2399999
Q ss_pred hHhHHhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcc
Q 012357 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (465)
Q Consensus 164 aegl~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~a 233 (465)
|+++ ..+|.++++||||++||+...+.+. +++.++ |.|+ .+.+.++||++++|++|++...+...
T Consensus 439 aral-----~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 513 (520)
T TIGR03269 439 AQVL-----IKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513 (520)
T ss_pred HHHH-----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999 8899999999999999999766554 555544 8887 77888999999999999998877654
Q ss_pred eE
Q 012357 234 HI 235 (465)
Q Consensus 234 DI 235 (465)
++
T Consensus 514 ~~ 515 (520)
T TIGR03269 514 EI 515 (520)
T ss_pred HH
Confidence 43
No 264
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.88 E-value=1.8e-22 Score=198.79 Aligned_cols=186 Identities=10% Similarity=0.105 Sum_probs=134.4
Q ss_pred eeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
.+++++.|+. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.++
T Consensus 22 ~~~l~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~ 98 (257)
T cd03288 22 IHDLCVRYENNLKPVLKHVKAYIKPGQ---KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLS 98 (257)
T ss_pred EEEEEEEeCCCCCcceeEEEEEEcCCC---EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEE
Confidence 4556666654 569999999999999 99999999999999999999999 89999999998753 34689
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccc-cccc---c---------ccccccCc--cccc-cccchhhhhHhHHhhhhc
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQV-PIYD---F---------KSSSRIGY--RTLE-VPSSRIVIIEGIYALSEK 173 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~~-p~~d---~---------~~~~~~~~--~~~~-l~~qRVlIaegl~aL~d~ 173 (465)
|+||++.+++ .|+.+|+........... .... . ........ ...+ ...||+.|++++ .
T Consensus 99 ~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral-----~ 172 (257)
T cd03288 99 IILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF-----V 172 (257)
T ss_pred EECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH-----h
Confidence 9999998876 488888753211000000 0000 0 00000000 1111 124999999999 8
Q ss_pred cCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..|.++++||||+++|+.....+.+-+.+ +|.|+ .+.+.. ||++++|++|+++..++..++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~ 241 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENL 241 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHH
Confidence 89999999999999999976655544432 37777 555554 999999999999988877665
No 265
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=1.7e-22 Score=241.61 Aligned_cols=189 Identities=14% Similarity=-0.006 Sum_probs=148.4
Q ss_pred eeeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------ccccc
Q 012357 39 IEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIID 109 (465)
Q Consensus 39 v~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig 109 (465)
..+++++.|+. +.||++|||.+++|+ ++||+||||||||||+++|+|++ |++|.|.++|+++. ++.+|
T Consensus 1939 ~v~nLsK~Y~~~~~~aL~~ISf~I~~GE---i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1939 RLNELTKVYSGTSSPAVDRLCVGVRPGE---CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred EEEEEEEEECCCCceEEEeeEEEEcCCc---EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 45778888875 689999999999999 99999999999999999999999 99999999998863 35699
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccc---cccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcc
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPL 177 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~~---p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~ 177 (465)
|++|++.+++.+|+++++.+...-..... ........+..+. ....+ ..||+.||.|+ ..+|.
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~AL-----i~~P~ 2090 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIAL-----IGCPP 2090 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH-----hcCCC
Confidence 99999999999999999987532111100 0000000111111 11112 24999999999 88999
Q ss_pred eeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 178 IDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 178 LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
++++||||+|+|+...+ ++++++.++|+|+ ++.++.+||++++|.+|++...|+..++
T Consensus 2091 VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2091 LVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999998655 4556666678888 8889999999999999999988877765
No 266
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=9e-23 Score=213.93 Aligned_cols=190 Identities=16% Similarity=0.142 Sum_probs=150.0
Q ss_pred eeeeeeEeeeCcEE-EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------ccccc
Q 012357 38 PIEDTLSFEKGFFI-VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 38 ~v~~~ls~~~g~~~-aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~-------~~~ig 109 (465)
-..++++|.|+... +|++|||+|++|+ -+||+|+|||||||++|.|.++.-.+|.|.+||.++. |+.||
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGe---kVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGE---KVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCC---EEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhee
Confidence 45688999999765 9999999999999 9999999999999999999999988999999999875 56799
Q ss_pred cccCCCCCCccchHHHHHHhhhcccc---ccc-----------cccccccccccCc--cccc-cccchhhhhHhHHhhhh
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKA---VQV-----------PIYDFKSSSRIGY--RTLE-VPSSRIVIIEGIYALSE 172 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~---~~~-----------p~~d~~~~~~~~~--~~~~-l~~qRVlIaegl~aL~d 172 (465)
++||+..+|+ +|+..||.+...... +.. ..++......+|. ..++ .+.|||.++|++
T Consensus 429 ~VPQd~~LFn-dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~----- 502 (591)
T KOG0057|consen 429 VVPQDSVLFN-DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF----- 502 (591)
T ss_pred EeCCcccccc-hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH-----
Confidence 9999998885 799999998643211 000 0010011111111 1112 245999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH-----HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP-----EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI-----~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.-+|.+.++||||++||.++.+++++-+.. .|+|+ ...+-.-||+|+++++|.+.+.|++.++.
T Consensus 503 lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell 573 (591)
T KOG0057|consen 503 LKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELL 573 (591)
T ss_pred hcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHh
Confidence 889999999999999999999998887765 48888 22334458999999999999999988874
No 267
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=5.4e-23 Score=232.54 Aligned_cols=218 Identities=17% Similarity=0.188 Sum_probs=159.6
Q ss_pred CCCCCccccccccceeeeeccCcc----eeeceeeeeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHH
Q 012357 9 ADSPRRRPGLLRDQVQLVKKKDSD----RYEIVPIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTV 81 (465)
Q Consensus 9 ~~~~~~~~~l~~~~~~l~~~~~~k----~y~~~~v~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKST 81 (465)
..+..+...++...+.+...+... ......-.+|+.|.|.. ..+|+++||.+++|+ .++|+|||||||||
T Consensus 318 ~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~---~valVG~SGsGKST 394 (1228)
T KOG0055|consen 318 RAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQ---TVALVGPSGSGKST 394 (1228)
T ss_pred ccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCC---EEEEECCCCCCHHH
Confidence 344455555555555544443111 11223445889999965 469999999999999 99999999999999
Q ss_pred HHHHHHhcC-CCeeEEEECCeecC-------ccccccccCCCCCCccchHHHHHHhhhcccccc--------cccccc--
Q 012357 82 FTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ--------VPIYDF-- 143 (465)
Q Consensus 82 L~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~--------~p~~d~-- 143 (465)
+++.|.++. |++|.|.+||.++. +.++|.++|+|.+| ..|+.|||.+.+.+...+ ....++
T Consensus 395 ~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~ 473 (1228)
T KOG0055|consen 395 LIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGKPDATREEIEEAAKAANAHDFIL 473 (1228)
T ss_pred HHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCCCcccHHHHHHHHHHccHHHHHH
Confidence 999999999 99999999999864 56899999999766 579999999976432110 001111
Q ss_pred ----ccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHH--HcCCCH------H
Q 012357 144 ----KSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ--RVGQEP------E 208 (465)
Q Consensus 144 ----~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~--e~G~TI------~ 208 (465)
.....++..-..+ .+|||+|||++ .-+|.++++||||++||++..+-+..-+. ..|+|- +
T Consensus 474 ~lp~g~~T~vge~g~qLSGGQKQRIAIARal-----v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRL 548 (1228)
T KOG0055|consen 474 KLPDGYDTLVGERGVQLSGGQKQRIAIARAL-----VRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRL 548 (1228)
T ss_pred hhHHhhcccccCCCCCCChHHHHHHHHHHHH-----HhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeeh
Confidence 0111111111112 34999999999 88999999999999999987655554333 347665 6
Q ss_pred HHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 209 EIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 209 ~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..++. +|++++|++|+|++.|.+.+++
T Consensus 549 StIrn-aD~I~v~~~G~IvE~G~h~ELi 575 (1228)
T KOG0055|consen 549 STIRN-ADKIAVMEEGKIVEQGTHDELI 575 (1228)
T ss_pred hhhhc-cCEEEEEECCEEEEecCHHHHH
Confidence 77777 9999999999999999999986
No 268
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.88 E-value=2.1e-22 Score=191.14 Aligned_cols=171 Identities=14% Similarity=0.123 Sum_probs=127.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vf 112 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. |++|.|.++|.+.. ++.++|++
T Consensus 3 i~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 3 ADELTCERDGRALFSGLSFTLAAGE---ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred EEEEEEEeCCceeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 4678888888889999999999999 99999999999999999999999 89999999998753 24689999
Q ss_pred CCCCCCccchHHHHHHhhhccccccccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVS 183 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDE 183 (465)
|++.+++..|+.+|+.+...... ..... ...+..+. ....+ ..||+.|++++ ..+|.+.++||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~--~~~~~-~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral-----~~~p~llllDE 151 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHS--DEQVE-EALARVGLNGFEDRPVAQLSAGQQRRVALARLL-----LSGRPLWILDE 151 (201)
T ss_pred cccccCCCcCHHHHHHhhccccc--HHHHH-HHHHHcCChhhhcCchhhCCHHHHHHHHHHHHH-----hcCCCEEEEeC
Confidence 99988888999999987532110 00000 00011110 01112 24999999999 88999999999
Q ss_pred eecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEc
Q 012357 184 VTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPM 221 (465)
Q Consensus 184 pts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m 221 (465)
||+++|+.....+. +++.++|.|+ ...+..+|++++..
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 152 PTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999998766554 4445557776 34455577776544
No 269
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=2.4e-22 Score=218.40 Aligned_cols=183 Identities=11% Similarity=0.041 Sum_probs=138.8
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCC
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l 117 (465)
.+++++.|+ .+++++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+++ ...++|+||++.+
T Consensus 9 i~~l~~~y~~~~~il~~vs~~i~~Ge---~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~----~~~i~~v~Q~~~~ 81 (556)
T PRK11819 9 MNRVSKVVPPKKQILKDISLSFFPGA---KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP----GIKVGYLPQEPQL 81 (556)
T ss_pred EeeEEEEeCCCCeeeeCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----CCEEEEEecCCCC
Confidence 356788887 6889999999999999 99999999999999999999999 9999999875 3469999999999
Q ss_pred CccchHHHHHHhhhcc--------------cccccc--------------------ccccc-----cccccCc-----cc
Q 012357 118 TDYDTLLENIRGLKEG--------------KAVQVP--------------------IYDFK-----SSSRIGY-----RT 153 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~--------------~~~~~p--------------------~~d~~-----~~~~~~~-----~~ 153 (465)
++..|+.+|+.+.... .....+ .++.. ..+..+. ..
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 161 (556)
T PRK11819 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKV 161 (556)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCch
Confidence 9889999998753110 000000 00000 0011111 01
Q ss_pred ccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCc
Q 012357 154 LEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 154 ~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G 224 (465)
..+ ..|||.|++++ ..+|.++++||||++||+.....+..-+.+.+.|+ .+.+..+||+++.|++|
T Consensus 162 ~~LSgGqkqrv~la~al-----~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g 236 (556)
T PRK11819 162 TKLSGGERRRVALCRLL-----LEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRG 236 (556)
T ss_pred hhcCHHHHHHHHHHHHH-----hCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCC
Confidence 112 23999999999 89999999999999999998887776666655576 77889999999999999
Q ss_pred EEE-ecCCcce
Q 012357 225 FIE-PDLQTAH 234 (465)
Q Consensus 225 ~I~-~~g~~aD 234 (465)
.++ ..|+..+
T Consensus 237 ~i~~~~g~~~~ 247 (556)
T PRK11819 237 RGIPWEGNYSS 247 (556)
T ss_pred EEEEecCCHHH
Confidence 976 5555443
No 270
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.88 E-value=1.6e-22 Score=220.95 Aligned_cols=188 Identities=17% Similarity=0.205 Sum_probs=145.5
Q ss_pred eeeeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 39 IEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 39 v~~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
-.++++|.|+. ..+++++|+++++|+ .++|+|+||||||||++.|+|+. |++|.|.+||.++. ++.++
T Consensus 336 ~~~~vsf~y~~~~~iL~~inl~i~~G~---~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 336 EFDDVSFSYDNSRQGVEDVSFEAKPGQ---TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred EEEEEEEEeCCCCceecceeEEECCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 46789999964 679999999999999 99999999999999999999999 99999999998754 46799
Q ss_pred cccCCCCCCccchHHHHHHhhhcccc---ccc-----------cccccccccccCc--cccc-cccchhhhhHhHHhhhh
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKA---VQV-----------PIYDFKSSSRIGY--RTLE-VPSSRIVIIEGIYALSE 172 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~---~~~-----------p~~d~~~~~~~~~--~~~~-l~~qRVlIaegl~aL~d 172 (465)
|++|+|.+|+ .|+++|+.+...... +.. ...+.......+. ...+ ...||+.|||++
T Consensus 413 ~v~Q~~~lf~-~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARal----- 486 (588)
T PRK13657 413 VVFQDAGLFN-RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL----- 486 (588)
T ss_pred EEecCccccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHH-----
Confidence 9999999886 699999987532111 000 0000001111111 1111 134999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+....++.+.+.+ +++|+ .+.+ +.||+++.|.+|++.+.|+++++.
T Consensus 487 l~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~-~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 487 LKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTV-RNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence 889999999999999999998888766654 36777 4444 569999999999999999888764
No 271
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.88 E-value=2.5e-22 Score=189.95 Aligned_cols=159 Identities=15% Similarity=0.096 Sum_probs=118.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vf 112 (465)
.+++++.|+...+++++||++.+|+ ++||+||||||||||+++|+|+. |++|.|.++|.+.. ++.++|++
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 3 ARNLACSRGERMLFEGLSFTLNAGE---ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred EEEEEEEECCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 3678888888899999999999999 99999999999999999999999 99999999998753 24689999
Q ss_pred CCCCCCccchHHHHHHhhhccccccccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVS 183 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDE 183 (465)
|++.+++..|+.+|+.+............ ....+..+. ....+ ..||+.|++++ ..+|.+.++||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~p~llllDE 153 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTI-EDALAAVGLTGFEDLPAAQLSAGQQRRLALARLW-----LSRAPLWILDE 153 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHH-HHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHH-----hcCCCEEEEeC
Confidence 99888888999999976532111000000 000111111 11112 24999999999 88999999999
Q ss_pred eecCccHHHHHHHH---HHHHHcCCCH
Q 012357 184 VTGGVHFDLVKRVF---RDIQRVGQEP 207 (465)
Q Consensus 184 pts~LD~~l~rrIl---rdl~e~G~TI 207 (465)
||+++|+.....+. +++.++|.|+
T Consensus 154 Pt~~LD~~~~~~l~~~l~~~~~~~~ti 180 (198)
T TIGR01189 154 PTTALDKAGVALLAGLLRAHLARGGIV 180 (198)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 99999998655544 4444456664
No 272
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.88 E-value=2.6e-22 Score=203.91 Aligned_cols=175 Identities=18% Similarity=0.275 Sum_probs=139.5
Q ss_pred CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCC------eeEEEECCeecC-----------cccccc
Q 012357 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPS------IAVITMDNYNDS-----------SRIIDG 110 (465)
Q Consensus 48 g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~------sG~I~lDg~~~~-----------~~~ig~ 110 (465)
+...|+++|||++..|| .++|+|.||||||-.++.+.+++|. +|.|.++|.++- -.+|+|
T Consensus 21 ~~~~aVk~isf~i~~GE---tlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~M 97 (534)
T COG4172 21 GTVEAVKGISFDIEAGE---TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGM 97 (534)
T ss_pred cceEeeccceeeecCCC---EEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEE
Confidence 47889999999999999 9999999999999999999999953 789999998753 246999
Q ss_pred ccCCC--CCCccchHHHHHHhhhc-cccc----------------cccc----cccccccccCccccccccchhhhhHhH
Q 012357 111 NFDDP--RLTDYDTLLENIRGLKE-GKAV----------------QVPI----YDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (465)
Q Consensus 111 vfQ~p--~l~~~~tv~enL~~l~~-~~~~----------------~~p~----~d~~~~~~~~~~~~~l~~qRVlIaegl 167 (465)
+||+| .+.+..|+.+.+..... .... ..|. ++.-.++.+| ...|||+||.|+
T Consensus 98 IFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG-----GqRQRVMIAMAL 172 (534)
T COG4172 98 IFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG-----GQRQRVMIAMAL 172 (534)
T ss_pred EecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc-----chhhHHHHHHHH
Confidence 99998 46788888888776432 1110 0110 1111112222 224999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+.+|.+++.||||++||+.... .+++++..+ |+.+ ..++.+++|+|.+|.+|.+++++..+++
T Consensus 173 -----an~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~l 245 (534)
T COG4172 173 -----ANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETL 245 (534)
T ss_pred -----cCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHH
Confidence 9999999999999999998655 455777665 9888 8899999999999999999999999888
No 273
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.88 E-value=1.7e-22 Score=218.83 Aligned_cols=188 Identities=14% Similarity=0.150 Sum_probs=142.1
Q ss_pred eeeeeeEeeeC--cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 38 PIEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 38 ~v~~~ls~~~g--~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
--.++++|.|+ ..++++++||++++|+ .++|+|+||||||||+++|+|+. |++|.|.+||.++. ++.
T Consensus 317 i~~~~v~~~y~~~~~~~l~~~~~~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 317 LSVENVTIVPPGGKKPTLRGISFRLQAGE---ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred EEEEEEEEEcCCCCccccccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 34578999995 3689999999999999 99999999999999999999999 99999999998753 457
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccccc-c-------c------ccccccccccCcccccc---ccchhhhhHhHHhh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQ-V-------P------IYDFKSSSRIGYRTLEV---PSSRIVIIEGIYAL 170 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~-~-------p------~~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL 170 (465)
+++++|+|.+++ .|+++|+.........+ . . ..........+.....+ ..||+.|||++
T Consensus 394 i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal--- 469 (544)
T TIGR01842 394 IGYLPQDVELFP-GTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL--- 469 (544)
T ss_pred eEEecCCccccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH---
Confidence 999999999887 49999998543211000 0 0 00000011111111112 34999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHHHHHH---HcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ---RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIlrdl~---e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||+++|+....++.+.+. ++|.|+ .+.+ ..||+++++++|++.+.|++.++
T Consensus 470 --l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l 540 (544)
T TIGR01842 470 --YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKILVLQDGRIARFGERDEV 540 (544)
T ss_pred --hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEeeCCHHHH
Confidence 88999999999999999998776665443 357777 4444 57999999999999999987665
No 274
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=1.5e-22 Score=192.25 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=126.4
Q ss_pred eeeeEeeeCcE-----EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccC
Q 012357 40 EDTLSFEKGFF-----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~-----~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ 113 (465)
.+++++.|+.. .+++++||++++|+ +++|+||||||||||+++|+|+. |++|.|.++| .++|++|
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~---~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------~i~~~~q 73 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGE---LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------SIAYVSQ 73 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------EEEEEec
Confidence 46788888653 79999999999999 99999999999999999999999 9999999998 6899999
Q ss_pred CCCCCccchHHHHHHhhhccccccccc-c-cccccc-----------ccCcccccc---ccchhhhhHhHHhhhhccCcc
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPI-Y-DFKSSS-----------RIGYRTLEV---PSSRIVIIEGIYALSEKLRPL 177 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~-~-d~~~~~-----------~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~ 177 (465)
++.+++ .|+.+|+.+........... . ...... ........+ ..||+.|++++ ..+|.
T Consensus 74 ~~~l~~-~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral-----~~~p~ 147 (204)
T cd03250 74 EPWIQN-GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV-----YSDAD 147 (204)
T ss_pred Cchhcc-CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH-----hcCCC
Confidence 998884 69999998742211000000 0 000000 000001112 24999999999 89999
Q ss_pred eeeeeeeecCccHHHHHHHHH----HHHHcCCCH------HHHHHHHhceEEEccCcE
Q 012357 178 IDLRVSVTGGVHFDLVKRVFR----DIQRVGQEP------EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 178 LdllDEpts~LD~~l~rrIlr----dl~e~G~TI------~~vi~~i~d~V~~m~~G~ 225 (465)
+.++|||++++|+...+.+.+ +..+.|.|+ .+.+.. ||+++.|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 999999999999987665544 333447777 566666 99999998873
No 275
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.88 E-value=3.2e-22 Score=192.39 Aligned_cols=173 Identities=18% Similarity=0.155 Sum_probs=126.2
Q ss_pred eeeEeeeC-------cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEEC--Ce--ecC----
Q 012357 41 DTLSFEKG-------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD--NY--NDS---- 104 (465)
Q Consensus 41 ~~ls~~~g-------~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lD--g~--~~~---- 104 (465)
+++++.|+ ...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++ |. +..
T Consensus 5 ~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 5 EDLSKTFTLHQQGGVRLPVLKNVSLTVNAGE---CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EeeEEEeecccCCCcceEEEecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 56777774 2579999999999999 99999999999999999999999 899999998 42 321
Q ss_pred -------ccccccccCCCCCCccchHHHHHHhhhccccccccc---cccccccccCc-------ccccc---ccchhhhh
Q 012357 105 -------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY-------RTLEV---PSSRIVII 164 (465)
Q Consensus 105 -------~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~-------~~~~l---~~qRVlIa 164 (465)
++.++|+||++.+++..++.+++.+........... .-....+..+. ....+ ..||+.|+
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 161 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIA 161 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHH
Confidence 235899999999999999999987632110010000 00000111111 01111 24999999
Q ss_pred HhHHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEc
Q 012357 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPM 221 (465)
Q Consensus 165 egl~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m 221 (465)
+++ ..+|.++++||||+++|+...+.+ ++.++++|.|+ .+.+..+||+++.+
T Consensus 162 ral-----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 162 RGF-----IADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHH-----hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999 889999999999999999876554 45555568887 67778899998764
No 276
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.4e-22 Score=216.05 Aligned_cols=183 Identities=11% Similarity=0.102 Sum_probs=135.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.|+ .+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++|
T Consensus 268 ~~~l~~~~~--~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~ 342 (510)
T PRK09700 268 VRNVTSRDR--KKVRDISFSVCRGE---ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAY 342 (510)
T ss_pred EeCccccCC--CcccceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEE
Confidence 345665543 48999999999999 99999999999999999999999 99999999998653 245899
Q ss_pred ccCC---CCCCccchHHHHHHhhhcc----c----cc-cccc-cc--cccccccCcc-------cccc---ccchhhhhH
Q 012357 111 NFDD---PRLTDYDTLLENIRGLKEG----K----AV-QVPI-YD--FKSSSRIGYR-------TLEV---PSSRIVIIE 165 (465)
Q Consensus 111 vfQ~---p~l~~~~tv~enL~~l~~~----~----~~-~~p~-~d--~~~~~~~~~~-------~~~l---~~qRVlIae 165 (465)
+||+ +.+++..|+.+|+.+.... . .. .... .. ....+..+.. ...+ ..|||.||+
T Consensus 343 v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAr 422 (510)
T PRK09700 343 ITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISK 422 (510)
T ss_pred ccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHH
Confidence 9998 4578889999998753210 0 00 0000 00 0011111111 1112 249999999
Q ss_pred hHHhhhhccCcceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCc
Q 012357 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQT 232 (465)
Q Consensus 166 gl~aL~d~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~ 232 (465)
++ ..+|.++++||||++||+.... ++++++.++|.|+ .+.+..+||+++++++|++...+..
T Consensus 423 al-----~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 423 WL-----CCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HH-----hcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 99 8899999999999999998655 4456666668888 6788899999999999999865544
No 277
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.87 E-value=2.7e-22 Score=215.06 Aligned_cols=184 Identities=13% Similarity=0.079 Sum_probs=137.9
Q ss_pred eeeeEeee---CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-CeeEEEECCeecC--------cc
Q 012357 40 EDTLSFEK---GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYNDS--------SR 106 (465)
Q Consensus 40 ~~~ls~~~---g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-~sG~I~lDg~~~~--------~~ 106 (465)
.+++++.| +...+++++||++.+|+ ++||+||||||||||+++|+|++ | ++|.|.++|.++. ++
T Consensus 260 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 260 ARNLTCWDVINPHRKRVDDVSFSLRRGE---ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred EeCCcccccccccccccccceeEEeCCc---EEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 45677777 34679999999999999 99999999999999999999999 5 7999999998753 24
Q ss_pred ccccccCCC---CCCccchHHHHHHhhhcc-c----ccccc---ccccccccccCcc-------cccc---ccchhhhhH
Q 012357 107 IIDGNFDDP---RLTDYDTLLENIRGLKEG-K----AVQVP---IYDFKSSSRIGYR-------TLEV---PSSRIVIIE 165 (465)
Q Consensus 107 ~ig~vfQ~p---~l~~~~tv~enL~~l~~~-~----~~~~p---~~d~~~~~~~~~~-------~~~l---~~qRVlIae 165 (465)
.++|+||++ .+++..|+.+|+.+.... . ..... ..-....++.+.. ...+ ..||+.||+
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~ 416 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAK 416 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHH
Confidence 589999996 478889999998763210 0 00000 0000011111111 1112 239999999
Q ss_pred hHHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCC
Q 012357 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (465)
Q Consensus 166 gl~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~ 231 (465)
++ ...|.++++||||++||+...+. +++.++++|.|+ ++.+.++||+++++++|++....+
T Consensus 417 al-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 417 ML-----LTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HH-----hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99 88999999999999999987654 457777778888 788899999999999999876443
No 278
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.87 E-value=4.1e-22 Score=197.48 Aligned_cols=199 Identities=13% Similarity=0.116 Sum_probs=141.5
Q ss_pred eeeeeccCcceeece-----eeeee-eEeee-CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCee
Q 012357 23 VQLVKKKDSDRYEIV-----PIEDT-LSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (465)
Q Consensus 23 ~~l~~~~~~k~y~~~-----~v~~~-ls~~~-g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG 94 (465)
+.+..++.+|.|++. ++.+. ..+.+ +.+.+++++||++++|+ ++||+||||||||||+++|+|++ |++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge---~~~liG~NGsGKSTLlk~L~Gl~~p~~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGD---VIGLVGINGSGKSTLSNIIGGSLSPTVG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 466778888888762 22111 12223 45789999999999999 99999999999999999999999 8999
Q ss_pred EEEECCeecCccccccccCCCCCCccchHHHHHHhhhccccccccc--------ccc-ccccccCcccccc---ccchhh
Q 012357 95 VITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI--------YDF-KSSSRIGYRTLEV---PSSRIV 162 (465)
Q Consensus 95 ~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~--------~d~-~~~~~~~~~~~~l---~~qRVl 162 (465)
.|.++|. +++.+|++.+.+..|+.+|+............. .+. ............+ ..||+.
T Consensus 80 ~I~~~g~------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~ 153 (264)
T PRK13546 80 KVDRNGE------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLG 153 (264)
T ss_pred EEEECCE------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH
Confidence 9999984 344566666667789999987532111100000 000 0001011011112 249999
Q ss_pred hhHhHHhhhhccCcceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcc
Q 012357 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (465)
Q Consensus 163 Iaegl~aL~d~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~a 233 (465)
+++++ ...|.++++|||++++|+.... ++++++.+.|.|+ ...+.++||+++++++|++.+.++..
T Consensus 154 Laral-----~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 228 (264)
T PRK13546 154 FSINI-----TVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELD 228 (264)
T ss_pred HHHHH-----hhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHH
Confidence 99999 8899999999999999998644 4455666668887 67788999999999999998887765
Q ss_pred eE
Q 012357 234 HI 235 (465)
Q Consensus 234 DI 235 (465)
++
T Consensus 229 ~~ 230 (264)
T PRK13546 229 DV 230 (264)
T ss_pred HH
Confidence 54
No 279
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=7.7e-22 Score=199.27 Aligned_cols=187 Identities=14% Similarity=0.123 Sum_probs=139.4
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC--------
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS-------- 104 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------P~sG~I~lDg~~~~-------- 104 (465)
..+++++.|+...+|+++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++.
T Consensus 47 ~i~nl~~~~~~~~iL~~is~~i~~Ge---~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~ 123 (305)
T PRK14264 47 SVEDLDVYYGDDHALKGVSMDIPEKS---VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE 123 (305)
T ss_pred EEEEEEEEeCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence 35789999988899999999999999 99999999999999999999997 37999999998653
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhcccc------------cccccc-c---cccccccC----------cccccc-
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA------------VQVPIY-D---FKSSSRIG----------YRTLEV- 156 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~------------~~~p~~-d---~~~~~~~~----------~~~~~l- 156 (465)
++.++|+||++.+++ .++.+|+.+...... ...... . ....+..+ .....+
T Consensus 124 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 202 (305)
T PRK14264 124 LRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLS 202 (305)
T ss_pred HhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCC
Confidence 246899999998887 499999986421100 000000 0 00000011 011112
Q ss_pred --ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceE-EEccCc
Q 012357 157 --PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETV-YPMYKA 224 (465)
Q Consensus 157 --~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V-~~m~~G 224 (465)
..||+.|++++ ..+|.++++|||+++||+.....+ ++++++ +.|+ .+.+..+||++ +++++|
T Consensus 203 gGq~qrv~LAraL-----~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G 276 (305)
T PRK14264 203 GGQQQRLCIARCL-----AVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGG 276 (305)
T ss_pred HHHHHHHHHHHHH-----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCC
Confidence 23999999999 899999999999999999865554 455544 4666 67888999997 577999
Q ss_pred EEEecCCcceE
Q 012357 225 FIEPDLQTAHI 235 (465)
Q Consensus 225 ~I~~~g~~aDI 235 (465)
+++..++..++
T Consensus 277 ~i~~~g~~~~~ 287 (305)
T PRK14264 277 ELVEYDDTDKI 287 (305)
T ss_pred EEEEeCCHHHH
Confidence 99988876654
No 280
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.6e-22 Score=186.37 Aligned_cols=183 Identities=16% Similarity=0.181 Sum_probs=137.6
Q ss_pred eeeeeEeeeCcEE--EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--ccccccccC
Q 012357 39 IEDTLSFEKGFFI--VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFD 113 (465)
Q Consensus 39 v~~~ls~~~g~~~--aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--~~~ig~vfQ 113 (465)
..++++.+|.++. +++++|+++.+|+ .+.++||||||||||++.++|+. |..|.|.+||..+. ...-|.+||
T Consensus 5 ~~~~~sl~y~g~~~~~le~vsL~ia~ge---~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 5 NVSHLSLSYEGKPRSALEDVSLTIASGE---LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ehhheEEecCCcchhhhhccceeecCCC---EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 4567888887766 9999999999999 99999999999999999999999 99999999999875 345689999
Q ss_pred CCCCCccchHHHHHHhhhcccccccc---ccccccccccCcc------cccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGYR------TLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~~------~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+++|+++.+|+++...-..+.+. .........++.+ ...+ -.|||.||+|+ +..|.++++
T Consensus 82 ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARAL-----a~eP~~LlL 156 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARAL-----AVEPQLLLL 156 (259)
T ss_pred cCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHh-----hcCcceEee
Confidence 99999999999999996532222111 1111111111111 1112 23999999999 999999999
Q ss_pred eeeecCccHHHHHH---HHHHH-HHcCCCH------HHHHHHHhceEEEccC--cEEEec
Q 012357 182 VSVTGGVHFDLVKR---VFRDI-QRVGQEP------EEIIHQISETVYPMYK--AFIEPD 229 (465)
Q Consensus 182 DEpts~LD~~l~rr---Ilrdl-~e~G~TI------~~vi~~i~d~V~~m~~--G~I~~~ 229 (465)
|||.+++|.-+.++ ++-++ .+.|+.+ .+..--++++.++|.. |+|++.
T Consensus 157 DEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~ 216 (259)
T COG4525 157 DEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216 (259)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEe
Confidence 99999999876444 34444 4457766 5666678899988865 455443
No 281
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.87 E-value=3.4e-22 Score=192.51 Aligned_cols=178 Identities=15% Similarity=0.190 Sum_probs=128.8
Q ss_pred eeeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 39 IEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 39 v~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
-.+++++.|+. ..+++++||.+++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.
T Consensus 13 ~~~~l~~~~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 89 (226)
T cd03248 13 KFQNVTFAYPTRPDTLVLQDVSFTLHPGE---VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred EEEEEEEEeCCCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence 45677777753 469999999999999 99999999999999999999999 89999999997643 346
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccccc-ccc-------cc----c--ccccccCcccccc---ccchhhhhHhHHhh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQ-VPI-------YD----F--KSSSRIGYRTLEV---PSSRIVIIEGIYAL 170 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~-~p~-------~d----~--~~~~~~~~~~~~l---~~qRVlIaegl~aL 170 (465)
++|+||++.+++ .|+.+|+.+........ ... .. + ............+ ..||+.|++++
T Consensus 90 i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral--- 165 (226)
T cd03248 90 VSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL--- 165 (226)
T ss_pred EEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH---
Confidence 899999998775 59999997532211000 000 00 0 0000111011112 23999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEE
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFI 226 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I 226 (465)
..+|.++++||||+++|+.....+.+-+.+ ++.|+ .+.+. .||+++.+++|.+
T Consensus 166 --~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 166 --IRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226 (226)
T ss_pred --hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence 899999999999999999976655443332 35666 55665 5999999998853
No 282
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.87 E-value=4.5e-22 Score=216.05 Aligned_cols=183 Identities=13% Similarity=0.049 Sum_probs=139.0
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCC
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l 117 (465)
.+++++.|+ .+++++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.+++ ...++|+||++.+
T Consensus 7 ~~nls~~~~~~~~il~~is~~i~~Ge---~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----~~~i~~v~Q~~~~ 79 (552)
T TIGR03719 7 MNRVSKVVPPKKEILKDISLSFFPGA---KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----GIKVGYLPQEPQL 79 (552)
T ss_pred EeeEEEecCCCCeeecCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----CCEEEEEeccCCC
Confidence 467888886 6789999999999999 99999999999999999999999 9999999875 3469999999999
Q ss_pred CccchHHHHHHhhhcc-c-------------cccccc--------------------ccc-----ccccccCc-----cc
Q 012357 118 TDYDTLLENIRGLKEG-K-------------AVQVPI--------------------YDF-----KSSSRIGY-----RT 153 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~-~-------------~~~~p~--------------------~d~-----~~~~~~~~-----~~ 153 (465)
++..|+.+|+.+.... . ...... ++. ...+..+. ..
T Consensus 80 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 159 (552)
T TIGR03719 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADV 159 (552)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCch
Confidence 9889999999763110 0 000000 000 00000110 01
Q ss_pred ccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCc
Q 012357 154 LEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 154 ~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G 224 (465)
..+ ..|||.|++++ ..+|.++++||||++||+.....+...+.+.+.|+ .+.+..+||+++.+++|
T Consensus 160 ~~LSgGqkqrv~la~al-----~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g 234 (552)
T TIGR03719 160 TKLSGGERRRVALCRLL-----LSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRG 234 (552)
T ss_pred hhcCHHHHHHHHHHHHH-----hcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECC
Confidence 112 23999999999 88999999999999999998887777776655576 77889999999999999
Q ss_pred EEE-ecCCcce
Q 012357 225 FIE-PDLQTAH 234 (465)
Q Consensus 225 ~I~-~~g~~aD 234 (465)
++. ..|+..+
T Consensus 235 ~i~~~~g~~~~ 245 (552)
T TIGR03719 235 RGIPWEGNYSS 245 (552)
T ss_pred EEEEecCCHHH
Confidence 975 4555444
No 283
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.87 E-value=2.7e-22 Score=218.39 Aligned_cols=188 Identities=14% Similarity=0.193 Sum_probs=143.6
Q ss_pred eeeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccc
Q 012357 39 IEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (465)
Q Consensus 39 v~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~i 108 (465)
-.++++|.|+. ..+++++||++++|+ .++|+||||||||||+++|+|+. |++|.|.+||.+.. ++.+
T Consensus 315 ~~~~v~~~y~~~~~~~l~~i~~~i~~G~---~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 315 DVNIRQFTYPQTDHPALENVNFTLKPGQ---MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred EEEEEEEECCCCCCccccCeeEEECCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 35778888853 579999999999999 99999999999999999999999 99999999998753 4579
Q ss_pred ccccCCCCCCccchHHHHHHhhhcccc---ccc-----cccc------cccccccCcccccc---ccchhhhhHhHHhhh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGKA---VQV-----PIYD------FKSSSRIGYRTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~~---~~~-----p~~d------~~~~~~~~~~~~~l---~~qRVlIaegl~aL~ 171 (465)
++++|+|.+|+ .|+++|+.+...... ... ...+ .......+.....+ ..||+.|||++
T Consensus 392 ~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARal---- 466 (569)
T PRK10789 392 AVVSQTPFLFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL---- 466 (569)
T ss_pred EEEccCCeecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH----
Confidence 99999999886 599999987532110 000 0000 00011111111112 34999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+....++.+.+.+ +|+|+ .+.+ ..||++++|++|++.+.|++.++.
T Consensus 467 -l~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 467 -LLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSAL-TEASEILVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred -hcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHH-HcCCEEEEEeCCEEEEecCHHHHH
Confidence 889999999999999999988777766544 57777 4444 459999999999999999988764
No 284
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.87 E-value=2.6e-22 Score=217.91 Aligned_cols=190 Identities=16% Similarity=0.151 Sum_probs=145.6
Q ss_pred eeeeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 38 PIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 38 ~v~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
-..++++|.|.. ..+++++||++++|+ .++|+|+||||||||++.|+|+. |++|.|.+||.++. ++.
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~---~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGE---TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 346889999853 679999999999999 99999999999999999999999 99999999998754 467
Q ss_pred cccccCCCCCCccchHHHHHHhhhc-ccc---cc-------c----cccccccccccCc--cccc-cccchhhhhHhHHh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKE-GKA---VQ-------V----PIYDFKSSSRIGY--RTLE-VPSSRIVIIEGIYA 169 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~-~~~---~~-------~----p~~d~~~~~~~~~--~~~~-l~~qRVlIaegl~a 169 (465)
++|++|+|.+|+ .|+++||..... ... .. . ..........++. ...+ ...||+.|||++
T Consensus 408 i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal-- 484 (571)
T TIGR02203 408 VALVSQDVVLFN-DTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL-- 484 (571)
T ss_pred ceEEccCccccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH--
Confidence 999999998885 599999987532 110 00 0 0000001111111 1111 134999999999
Q ss_pred hhhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH-----HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP-----EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 170 L~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI-----~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.-+|.+.++||||+++|....+++.+.+.+ .++|+ .......||+|+.+.+|++.+.|.++++.
T Consensus 485 ---l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 485 ---LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred ---hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 789999999999999999998888766654 36777 23345679999999999999999988863
No 285
>PTZ00301 uridine kinase; Provisional
Probab=99.87 E-value=2.2e-22 Score=193.17 Aligned_cols=175 Identities=31% Similarity=0.518 Sum_probs=151.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc----C-CC-eeEEEECCeecCccc-----c-ccccCCCCCCccchHHHHHHhhhcc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF----M-PS-IAVITMDNYNDSSRI-----I-DGNFDDPRLTDYDTLLENIRGLKEG 133 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl----l-P~-sG~I~lDg~~~~~~~-----i-g~vfQ~p~l~~~~tv~enL~~l~~~ 133 (465)
.++|||.|+||||||||++.|... . |. ...+++|+|+..... - .+.|++|.++++..+.+.|..++.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 469999999999999999877543 2 33 457889999865322 1 3588999999999999999999998
Q ss_pred ccccccccccccccccCccccccccchhhhhHhHHhhh-hccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHHHH
Q 012357 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (465)
Q Consensus 134 ~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~-d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~vi~ 212 (465)
..+..|.|++..+.+.. ....+++.+|+|+||+|+++ +++++.+|++.+.+++.|.+..|++.|+..++|+++..+++
T Consensus 83 ~~i~~P~yd~~~~~~~~-~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~ 161 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSD-TAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE 161 (210)
T ss_pred CcccCCCcccccCCcCC-ceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence 88999999999877664 45566778999999999985 68899999999999999999999999999999999999999
Q ss_pred HHhceEEEccCcEEEecCCcceEEeeCCC
Q 012357 213 QISETVYPMYKAFIEPDLQTAHIKIINKF 241 (465)
Q Consensus 213 ~i~d~V~~m~~G~I~~~g~~aDIiI~~~~ 241 (465)
+|.+++.+++..+|.|++..||+++++..
T Consensus 162 ~~~~~v~~~~~~~I~p~k~~ADiIi~~~~ 190 (210)
T PTZ00301 162 QYEATVRPMYYAYVEPSKVYADIIVPSWK 190 (210)
T ss_pred HHHHhhcccHHHHcCccccCCcEEEcCCC
Confidence 99999999999999999999999996433
No 286
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.87 E-value=4e-22 Score=217.89 Aligned_cols=188 Identities=20% Similarity=0.228 Sum_probs=144.2
Q ss_pred eeeeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 39 IEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 39 v~~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
-.++++|.|+. ..+++++||++++|+ .++|+||||||||||+++|+|+. |++|.|.+||.++. ++.++
T Consensus 336 ~~~~v~~~y~~~~~~l~~i~~~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 336 EFRHITFEFANSSQGVFDVSFEAKAGQ---TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred EEEEEEEECCCCCccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 45789999964 579999999999999 99999999999999999999999 99999999998753 35799
Q ss_pred cccCCCCCCccchHHHHHHhhhcccc---ccc-----ccccc------ccccccCc--cccc-cccchhhhhHhHHhhhh
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKA---VQV-----PIYDF------KSSSRIGY--RTLE-VPSSRIVIIEGIYALSE 172 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~---~~~-----p~~d~------~~~~~~~~--~~~~-l~~qRVlIaegl~aL~d 172 (465)
+++|++.+++ .|+++|+.+...... ... ...++ ......+. ...+ ...||+.||+++
T Consensus 413 ~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARal----- 486 (585)
T TIGR01192 413 TVFQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAI----- 486 (585)
T ss_pred EEccCCccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH-----
Confidence 9999999886 699999987532110 000 00000 00011111 1111 134999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+...+.+.+.+.+ .|+|+ .+.+. .||+++++++|++.+.|++.++.
T Consensus 487 l~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 487 LKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKGSFQELI 557 (585)
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence 889999999999999999987777665543 37777 45554 59999999999999999887764
No 287
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=5.7e-22 Score=187.93 Aligned_cols=160 Identities=14% Similarity=0.071 Sum_probs=118.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vf 112 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. |++|.|.++|.++. ++.++|++
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 4 VIELDFDYHDQPLLQQISFHLPAGG---LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEeCCeeEEeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 4678888888889999999999999 99999999999999999999999 99999999998653 34689999
Q ss_pred CCCCCCccchHHHHHHhhhccccccccc---c-ccccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVPI---Y-DFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p~---~-d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpt 185 (465)
|++.+++..|+.+|+.+........... . .+............+ ..||+.|++++ ..+|.++++||||
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral-----~~~p~~lilDEP~ 155 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLW-----MSKAKLWLLDEPL 155 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHH-----hcCCCEEEEeCCC
Confidence 9998888899999998642111000000 0 000000001011112 24999999999 8999999999999
Q ss_pred cCccHHHHHHHH---HHHHHcCCCH
Q 012357 186 GGVHFDLVKRVF---RDIQRVGQEP 207 (465)
Q Consensus 186 s~LD~~l~rrIl---rdl~e~G~TI 207 (465)
+++|+.....+. ++++++|.|+
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~ti 180 (200)
T PRK13540 156 VALDELSLLTIITKIQEHRAKGGAV 180 (200)
T ss_pred cccCHHHHHHHHHHHHHHHHcCCEE
Confidence 999998765544 4444445553
No 288
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.87 E-value=4.2e-22 Score=221.65 Aligned_cols=189 Identities=16% Similarity=0.243 Sum_probs=145.5
Q ss_pred eeeeeeEeeeC--cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 38 PIEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 38 ~v~~~ls~~~g--~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
--.++++|.|+ ...+++++||++++|+ .++|+|+||||||||+++|+|+. |++|.|.+||.++. ++.
T Consensus 456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~---~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGE---FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 34578999995 3569999999999999 99999999999999999999999 99999999999764 467
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccccc-c-------------cccccccccccC--ccccc-cccchhhhhHhHHhh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQ-V-------------PIYDFKSSSRIG--YRTLE-VPSSRIVIIEGIYAL 170 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~-~-------------p~~d~~~~~~~~--~~~~~-l~~qRVlIaegl~aL 170 (465)
++|++|++.+|+ .|+++|+.........+ . ..........++ +...+ ...||+.|||++
T Consensus 533 i~~v~q~~~lf~-~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARal--- 608 (694)
T TIGR01846 533 MGVVLQENVLFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARAL--- 608 (694)
T ss_pred CeEEccCCeehh-hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHH---
Confidence 999999999886 69999998643211000 0 000000111111 11111 124999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+....++.+.+.+ .|.|+ .+.+. .||++++|++|++.+.|++.+++
T Consensus 609 --l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 609 --VGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVR-ACDRIIVLEKGQIAESGRHEELL 679 (694)
T ss_pred --HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHH-hCCEEEEEeCCEEEEeCCHHHHH
Confidence 889999999999999999988877766654 47777 55555 49999999999999999988874
No 289
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.87 E-value=5.1e-22 Score=190.41 Aligned_cols=175 Identities=16% Similarity=0.145 Sum_probs=127.8
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------cc
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SR 106 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----------~~ 106 (465)
..+++|.|+ ...+++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.++|.+.. ++
T Consensus 3 ~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 3 VTNGYFSWGSGLATLSNINIRIPTGQ---LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeEEecCCCCcceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 356788886 5679999999999999 99999999999999999999999 89999999997532 24
Q ss_pred ccccccCCCCCCccchHHHHHHhhhcccccccc-ccc-cccccc-----------cCcccccc---ccchhhhhHhHHhh
Q 012357 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP-IYD-FKSSSR-----------IGYRTLEV---PSSRIVIIEGIYAL 170 (465)
Q Consensus 107 ~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p-~~d-~~~~~~-----------~~~~~~~l---~~qRVlIaegl~aL 170 (465)
.++|++|++.++ ..++.+|+............ ..+ ...... .......+ ..||+.|++++
T Consensus 80 ~i~~~~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral--- 155 (218)
T cd03290 80 SVAYAAQKPWLL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARAL--- 155 (218)
T ss_pred eEEEEcCCCccc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHH---
Confidence 589999999887 46999999764311100000 000 000000 00011112 24999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHH-----HHHHHcCCCH------HHHHHHHhceEEEccCc
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVF-----RDIQRVGQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIl-----rdl~e~G~TI------~~vi~~i~d~V~~m~~G 224 (465)
..+|.++++||||+++|+.....++ +.+.+.|.|+ .+.+. .||+++.+++|
T Consensus 156 --~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G 217 (218)
T cd03290 156 --YQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDG 217 (218)
T ss_pred --hhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCC
Confidence 8999999999999999998765443 4455557787 45554 69999999876
No 290
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.9e-22 Score=213.48 Aligned_cols=183 Identities=10% Similarity=0.109 Sum_probs=140.4
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCC-
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR- 116 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~- 116 (465)
-.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|. +.++|++|++.
T Consensus 321 ~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----~~i~~~~q~~~~ 393 (530)
T PRK15064 321 EVENLTKGFDNGPLFKNLNLLLEAGE---RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN----ANIGYYAQDHAY 393 (530)
T ss_pred EEEeeEEeeCCceeecCcEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----eEEEEEcccccc
Confidence 45788999988889999999999999 99999999999999999999999 99999999873 46999999974
Q ss_pred -CCccchHHHHHHhhhccccccccccccccccccCc-------ccccc---ccchhhhhHhHHhhhhccCcceeeeeeee
Q 012357 117 -LTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY-------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (465)
Q Consensus 117 -l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~-------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpt 185 (465)
+++..++.+++............. ....+..+. ....+ ..||+.|++++ ..+|.++++||||
T Consensus 394 ~~~~~~t~~~~~~~~~~~~~~~~~~--~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al-----~~~p~lllLDEPt 466 (530)
T PRK15064 394 DFENDLTLFDWMSQWRQEGDDEQAV--RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLM-----MQKPNVLVMDEPT 466 (530)
T ss_pred cCCCCCcHHHHHHHhccCCccHHHH--HHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHH-----hcCCCEEEEcCCC
Confidence 455689999986532111000000 000111110 11112 24999999999 8899999999999
Q ss_pred cCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEE-ecCCcceE
Q 012357 186 GGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIE-PDLQTAHI 235 (465)
Q Consensus 186 s~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~-~~g~~aDI 235 (465)
++||+.....+...+.+.+.|+ .+.+..+||+++++++|.++ ..|+..++
T Consensus 467 ~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 467 NHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence 9999998888777776665576 77889999999999999987 56655543
No 291
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=8.5e-22 Score=187.83 Aligned_cols=159 Identities=14% Similarity=0.084 Sum_probs=118.0
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----ccccccccCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDD 114 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----~~~ig~vfQ~ 114 (465)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. |++|.|.++|.+.. ++.++|++|.
T Consensus 5 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 5 GEDLACVRGGRVLFSGLSFTLAAGE---ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEeEEEEECCeEEEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 4667888877889999999999999 99999999999999999999999 89999999998642 3468899988
Q ss_pred CCCCccchHHHHHHhhhccccccccccccccccccCc--------cccc-cccchhhhhHhHHhhhhccCcceeeeeeee
Q 012357 115 PRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY--------RTLE-VPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (465)
Q Consensus 115 p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~--------~~~~-l~~qRVlIaegl~aL~d~~~p~LdllDEpt 185 (465)
+.+++..|+.+|+.+............ ....+..+. ...+ ...||+.|++++ ..+|.++++||||
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al-----~~~p~llllDEPt 155 (207)
T PRK13539 82 NAMKPALTVAENLEFWAAFLGGEELDI-AAALEAVGLAPLAHLPFGYLSAGQKRRVALARLL-----VSNRPIWILDEPT 155 (207)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCcHHHH-HHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHH-----hcCCCEEEEeCCc
Confidence 888888999999876432111000000 000111111 0111 124999999999 8899999999999
Q ss_pred cCccHHHHHHHH---HHHHHcCCCH
Q 012357 186 GGVHFDLVKRVF---RDIQRVGQEP 207 (465)
Q Consensus 186 s~LD~~l~rrIl---rdl~e~G~TI 207 (465)
+++|+.....+. +++.++|.|+
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~ti 180 (207)
T PRK13539 156 AALDAAAVALFAELIRAHLAQGGIV 180 (207)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 999998766554 4444457765
No 292
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.87 E-value=1.3e-21 Score=176.70 Aligned_cols=135 Identities=14% Similarity=0.173 Sum_probs=115.4
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~ 118 (465)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.+||. +.++|+||
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~~~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~----- 70 (144)
T cd03221 3 LENLSKTYGGKLLLKDISLTINPGD---RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQ----- 70 (144)
T ss_pred EEEEEEEECCceEEEeeEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEcc-----
Confidence 4578888877789999999999999 99999999999999999999999 89999999984 36788887
Q ss_pred ccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHH
Q 012357 119 DYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFR 198 (465)
Q Consensus 119 ~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlr 198 (465)
.++ ...||+.|++++ ..+|.+.++|||++++|+.....+.+
T Consensus 71 -----------------------------lS~-----G~~~rv~laral-----~~~p~illlDEP~~~LD~~~~~~l~~ 111 (144)
T cd03221 71 -----------------------------LSG-----GEKMRLALAKLL-----LENPNLLLLDEPTNHLDLESIEALEE 111 (144)
T ss_pred -----------------------------CCH-----HHHHHHHHHHHH-----hcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 111 123899999999 89999999999999999998777766
Q ss_pred HHHHcCCCH------HHHHHHHhceEEEccCcE
Q 012357 199 DIQRVGQEP------EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 199 dl~e~G~TI------~~vi~~i~d~V~~m~~G~ 225 (465)
-+.+.+.|+ .+.+..+||++++|++|+
T Consensus 112 ~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 112 ALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 666556676 677889999999998874
No 293
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.87 E-value=1.8e-21 Score=207.51 Aligned_cols=199 Identities=12% Similarity=0.106 Sum_probs=143.2
Q ss_pred eeeeccCcceeec--ee--eeeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeE
Q 012357 24 QLVKKKDSDRYEI--VP--IEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAV 95 (465)
Q Consensus 24 ~l~~~~~~k~y~~--~~--v~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~ 95 (465)
.+..++.+|.|.. ++ -.+++++.|+. ..+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.
T Consensus 4 ~i~~~n~tk~y~~~~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GE---ivgIiGpNGSGKSTLLkiLaGLl~P~sGe 80 (549)
T PRK13545 4 KVKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGE---IVGIIGLNGSGKSTLSNLIAGVTMPNKGT 80 (549)
T ss_pred eEEEEeeeeeccccccceeEEEEEEEecCCCccceEEeeeEEEEeCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCceE
Confidence 4556677888862 22 24678888865 579999999999999 99999999999999999999999 99999
Q ss_pred EEECCeecCccccccccCCCCCCccchHHHHHHhhhccccccccccc---cccccccCc------ccccc---ccchhhh
Q 012357 96 ITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY------RTLEV---PSSRIVI 163 (465)
Q Consensus 96 I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d---~~~~~~~~~------~~~~l---~~qRVlI 163 (465)
|.++|... .+ .+.+.+++..|+.+|+.+............. ....+..+. ....+ ..||+.|
T Consensus 81 I~I~G~~~---~i---~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaL 154 (549)
T PRK13545 81 VDIKGSAA---LI---AISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGF 154 (549)
T ss_pred EEECCEee---eE---EeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHH
Confidence 99999652 11 2233455667999998763210000000000 000011110 11112 2499999
Q ss_pred hHhHHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcce
Q 012357 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (465)
Q Consensus 164 aegl~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aD 234 (465)
|+++ ..+|.++++||||++||+..... +++++.++|.|+ .+.+.++||+++.+++|++...+...+
T Consensus 155 ArAL-----~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~e 229 (549)
T PRK13545 155 AISV-----HINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKE 229 (549)
T ss_pred HHHH-----HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999 88999999999999999986554 445555668887 678889999999999999999888776
Q ss_pred EE
Q 012357 235 IK 236 (465)
Q Consensus 235 Ii 236 (465)
+.
T Consensus 230 l~ 231 (549)
T PRK13545 230 VV 231 (549)
T ss_pred HH
Confidence 53
No 294
>PLN03130 ABC transporter C family member; Provisional
Probab=99.86 E-value=5.8e-22 Score=236.73 Aligned_cols=189 Identities=13% Similarity=0.114 Sum_probs=147.0
Q ss_pred eeeeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 38 PIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 38 ~v~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
--.+|++|.|.. .++|+|+||++++|+ .+||+|+||||||||+++|.++. |++|.|.+||.++. |++
T Consensus 1238 I~f~nVsf~Y~~~~~~VL~~is~~I~~Ge---kVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1238 IKFEDVVLRYRPELPPVLHGLSFEISPSE---KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred EEEEEEEEEeCCCCCceecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc
Confidence 356889999953 479999999999999 99999999999999999999999 99999999999865 578
Q ss_pred cccccCCCCCCccchHHHHHHhhhccccccc-------cccc------cccccccCc--ccccc-ccchhhhhHhHHhhh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQV-------PIYD------FKSSSRIGY--RTLEV-PSSRIVIIEGIYALS 171 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~-------p~~d------~~~~~~~~~--~~~~l-~~qRVlIaegl~aL~ 171 (465)
+++++|+|.+|+. |+++||.........+. ...+ ......++. ...+. ..||+.||||+
T Consensus 1315 IsiVpQdp~LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARAL---- 1389 (1622)
T PLN03130 1315 LGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARAL---- 1389 (1622)
T ss_pred cEEECCCCccccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHH----
Confidence 9999999999974 99999976431100000 0000 011111111 11221 34999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.-+|.++++||+|+++|..+...+.+.+.+ +|+|+ .+.+.. ||+|++|++|+|++.|++.+++
T Consensus 1390 -Lr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl 1460 (1622)
T PLN03130 1390 -LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLL 1460 (1622)
T ss_pred -HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHH
Confidence 789999999999999999987777766655 37777 555554 8999999999999999999985
No 295
>PLN03211 ABC transporter G-25; Provisional
Probab=99.86 E-value=6e-22 Score=218.85 Aligned_cols=188 Identities=13% Similarity=0.100 Sum_probs=144.2
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CC--eeEEEECCeecC---ccccccccCC
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS--IAVITMDNYNDS---SRIIDGNFDD 114 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~--sG~I~lDg~~~~---~~~ig~vfQ~ 114 (465)
+++++.|+.+.+|+++|+++++|+ ++||+||||||||||+++|+|.. |+ +|.|.+||.+.. ++.++|++|+
T Consensus 72 ~~l~~~~~~~~iL~~vs~~i~~Ge---~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 72 SDETRQIQERTILNGVTGMASPGE---ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccCCCCeeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 456677888899999999999999 99999999999999999999998 64 899999998753 3568999999
Q ss_pred CCCCccchHHHHHHhhhccc---cccccc----c-----cccc----ccccCcc---ccc-cccchhhhhHhHHhhhhcc
Q 012357 115 PRLTDYDTLLENIRGLKEGK---AVQVPI----Y-----DFKS----SSRIGYR---TLE-VPSSRIVIIEGIYALSEKL 174 (465)
Q Consensus 115 p~l~~~~tv~enL~~l~~~~---~~~~p~----~-----d~~~----~~~~~~~---~~~-l~~qRVlIaegl~aL~d~~ 174 (465)
+.+++..|++|++.+..... ...... . .... ...++.. ..+ ...||+.|++++ ..
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL-----~~ 223 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM-----LI 223 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHH-----Hh
Confidence 99999999999998743111 100000 0 0001 0001110 111 234999999999 88
Q ss_pred CcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HH-HHHHHhceEEEccCcEEEecCCcceEE
Q 012357 175 RPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EE-IIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 175 ~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~-vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+|.++++||||++||+....+ ++++++++|+|+ .+ .+.+++|+++.+.+|+++..|+..+++
T Consensus 224 ~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 224 NPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 999999999999999987554 456666678888 22 467899999999999999999988764
No 296
>PLN03232 ABC transporter C family member; Provisional
Probab=99.86 E-value=5.4e-22 Score=236.23 Aligned_cols=188 Identities=15% Similarity=0.163 Sum_probs=146.7
Q ss_pred eeeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccc
Q 012357 39 IEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (465)
Q Consensus 39 v~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~i 108 (465)
..++++|.|.. .++|+|+||++++|+ .+||+|+||||||||+++|.++. |++|.|.+||.++. |+++
T Consensus 1236 ~f~nVsf~Y~~~~~~vL~~isl~I~~Ge---kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1236 KFEDVHLRYRPGLPPVLHGLSFFVSPSE---KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred EEEEEEEEECCCCCcccccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 46889999953 579999999999999 99999999999999999999999 99999999999864 5679
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc--ccc-----ccccc------cccccccCc--ccccc-ccchhhhhHhHHhhhh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGK--AVQ-----VPIYD------FKSSSRIGY--RTLEV-PSSRIVIIEGIYALSE 172 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~--~~~-----~p~~d------~~~~~~~~~--~~~~l-~~qRVlIaegl~aL~d 172 (465)
++++|+|.+|+ .|+++||....... .+. ....+ ......++. ...+. ..||+.||||+
T Consensus 1313 ~iVpQdp~LF~-gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL----- 1386 (1495)
T PLN03232 1313 SIIPQSPVLFS-GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL----- 1386 (1495)
T ss_pred EEECCCCeeeC-ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH-----
Confidence 99999999997 59999997642110 000 00000 011111111 11221 34999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.-+|.++++||+|+++|.++.+.+.+.+.+ +++|+ .+.+.. ||+|++|++|++++.|++.+++
T Consensus 1387 Lr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1387 LRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence 789999999999999999987777766665 37787 555655 8999999999999999999885
No 297
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.5e-22 Score=210.43 Aligned_cols=216 Identities=15% Similarity=0.108 Sum_probs=158.0
Q ss_pred CCCccccccccceeeeeccCcceeec---eeeeeeeEeeeCcE--EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHH
Q 012357 11 SPRRRPGLLRDQVQLVKKKDSDRYEI---VPIEDTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEK 85 (465)
Q Consensus 11 ~~~~~~~l~~~~~~l~~~~~~k~y~~---~~v~~~ls~~~g~~--~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~ 85 (465)
|..|...++...++-..+ ...+.. .-..+|+||.|.+. ++|+|+||.+++|| -++|+|+||||||||++.
T Consensus 309 Sa~Rl~~i~~q~~e~~~~--~~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GE---kvAIlG~SGsGKSTllqL 383 (573)
T COG4987 309 SARRLNDILDQKPEVTFP--DEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGE---KVAILGRSGSGKSTLLQL 383 (573)
T ss_pred HHHHHhhhccCCcccCCC--ccccCCccceeeeccceeecCCCccchhhccceeecCCC---eEEEECCCCCCHHHHHHH
Confidence 445555555544433333 122221 23678999999653 59999999999999 999999999999999999
Q ss_pred HHhcC-CCeeEEEECCeecC-------ccccccccCCCCCCccchHHHHHHhhhcccccc----------ccc--ccc--
Q 012357 86 VLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ----------VPI--YDF-- 143 (465)
Q Consensus 86 L~gll-P~sG~I~lDg~~~~-------~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~----------~p~--~d~-- 143 (465)
|.|.. |++|+|.++|.++. ++.++++.|.+.+|. .|+++|+.........+ ... .+.
T Consensus 384 l~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~ 462 (573)
T COG4987 384 LAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFS-GTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPD 462 (573)
T ss_pred HHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChh
Confidence 99999 99999999997643 346899999998885 69999998754431110 000 000
Q ss_pred ccccccC--cccccc-ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHc--CCCHH-----HHHHH
Q 012357 144 KSSSRIG--YRTLEV-PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEPE-----EIIHQ 213 (465)
Q Consensus 144 ~~~~~~~--~~~~~l-~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~--G~TI~-----~vi~~ 213 (465)
.....++ ++..+. +.+|+.|+|.+ ..+..+.++||||.|||+.+.++++..+.++ |+|+. -.--+
T Consensus 463 gl~t~lge~G~~LSGGE~rRLAlAR~L-----L~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le 537 (573)
T COG4987 463 GLNTWLGEGGRRLSGGERRRLALARAL-----LHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE 537 (573)
T ss_pred hhhchhccCCCcCCchHHHHHHHHHHH-----HcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh
Confidence 1111111 122222 34999999999 6678899999999999999999999887654 88982 22234
Q ss_pred HhceEEEccCcEEEecCCcceEEe
Q 012357 214 ISETVYPMYKAFIEPDLQTAHIKI 237 (465)
Q Consensus 214 i~d~V~~m~~G~I~~~g~~aDIiI 237 (465)
.||+|++|++|+++++|+++++.-
T Consensus 538 ~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 538 RMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred hcCEEEEEECCeeeecCCHHhhhc
Confidence 789999999999999999999863
No 298
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.86 E-value=1.1e-21 Score=213.25 Aligned_cols=188 Identities=20% Similarity=0.205 Sum_probs=142.3
Q ss_pred eeeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 39 IEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 39 v~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
-.++++|.|+. ..+|+++||++++|+ .++|+|+||||||||++.|+|+. |++|.|.+||.++. ++.
T Consensus 339 ~~~~v~f~y~~~~~~~iL~~inl~i~~Ge---~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 339 EFEQVNFAYPARPDQPALDGLNLTVRPGE---TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred EEEEEEEECCCCCCCccccceeEEecCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 46789999853 579999999999999 99999999999999999999999 99999999998754 357
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccc---c-------cc----cccccccccccCc--cccc-cccchhhhhHhHHhh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKA---V-------QV----PIYDFKSSSRIGY--RTLE-VPSSRIVIIEGIYAL 170 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~---~-------~~----p~~d~~~~~~~~~--~~~~-l~~qRVlIaegl~aL 170 (465)
++|++|+|.+|+ .|+++|+.+...... . .. ..++......++. ...+ ...||+.+||++
T Consensus 416 i~~~~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal--- 491 (576)
T TIGR02204 416 MALVPQDPVLFA-ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI--- 491 (576)
T ss_pred ceEEccCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH---
Confidence 999999999885 699999987532110 0 00 0000011111111 1111 134999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.-+|.++++||||+++|+.....+.+.+.+ +++|+ .+.+ ..||+|+++.+|++.+.|.+.++.
T Consensus 492 --~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~-~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 492 --LKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATV-LKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred --HhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCCEEEEEECCEEEeeecHHHHH
Confidence 779999999999999999987666554443 47777 4444 569999999999999999877763
No 299
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.86 E-value=2e-21 Score=232.56 Aligned_cols=187 Identities=10% Similarity=0.007 Sum_probs=146.4
Q ss_pred eeeeEeeeC--cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccc
Q 012357 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g--~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~ 110 (465)
.+++++.|+ .+.+++++||++.+|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.+|+
T Consensus 931 I~nLsK~y~~~~k~aL~~lsl~I~~Ge---i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~ 1007 (2272)
T TIGR01257 931 VKNLVKIFEPSGRPAVDRLNITFYENQ---ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGM 1007 (2272)
T ss_pred EEeEEEEecCCCceEEEeeEEEEcCCc---EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEE
Confidence 577888884 5789999999999999 99999999999999999999999 99999999998763 356899
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcce
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLI 178 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~L 178 (465)
+||++.+++..|+.+++.+........... .-....+..+. ....+ ..||+.||+|+ ..+|.+
T Consensus 1008 ~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArAL-----i~~PkV 1082 (2272)
T TIGR01257 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAF-----VGDAKV 1082 (2272)
T ss_pred EecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-----HcCCCE
Confidence 999999999999999998753211110000 00001111111 11112 24999999999 899999
Q ss_pred eeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 179 DLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 179 dllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+++||||+++|+...+. ++++++ +|+|+ ++.+..+||++++|.+|++...|...++
T Consensus 1083 LLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999987554 455553 48887 8889999999999999999998877654
No 300
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=4.9e-22 Score=185.75 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=147.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~v 111 (465)
.+++++.||.+.+++++|+.+++|+ +.+|+||||||||||+.+++.++ +++|.|.+||.++. .++++..
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~---iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGG---ITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCc---eeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 4678889999999999999999999 99999999999999999999999 89999999999875 2457788
Q ss_pred cCCCCCCccchHHHHHHhhhcccc-cccccccc---------ccccccCc---cccc-cccchhhhhHhHHhhhhccCcc
Q 012357 112 FDDPRLTDYDTLLENIRGLKEGKA-VQVPIYDF---------KSSSRIGY---RTLE-VPSSRIVIIEGIYALSEKLRPL 177 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l~~~~~-~~~p~~d~---------~~~~~~~~---~~~~-l~~qRVlIaegl~aL~d~~~p~ 177 (465)
-|........||++-+.|.+-... ......|+ -..+.+.. ..++ ...||+.||.-+ +-...
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVl-----aQdTd 155 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVL-----AQDTD 155 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheee-----eccCc
Confidence 888777778899999998652111 00000000 00000000 0111 134899999888 88899
Q ss_pred eeeeeeeecCccHHH---HHHHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 178 IDLRVSVTGGVHFDL---VKRVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 178 LdllDEpts~LD~~l---~rrIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+.++|||-..||... +.+++|.+.++ |+|+ ...+..|+|++.-|.+|+++.+|.+.+++
T Consensus 156 yvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 156 YVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred EEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhc
Confidence 999999999999985 44566777665 9998 78899999999999999999999999886
No 301
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.8e-22 Score=208.44 Aligned_cols=215 Identities=20% Similarity=0.226 Sum_probs=165.4
Q ss_pred CccccccccceeeeeccCccee---eceeeeeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHh
Q 012357 13 RRRPGLLRDQVQLVKKKDSDRY---EIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (465)
Q Consensus 13 ~~~~~l~~~~~~l~~~~~~k~y---~~~~v~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~g 88 (465)
++-..|+|++++++......-+ +.+-...|++|.|. ++++|+||||++.+|+ .++++|||||||||++|.|..
T Consensus 510 Enmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGk---tvAlVG~SGaGKSTimRlLfR 586 (790)
T KOG0056|consen 510 ENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGK---TVALVGPSGAGKSTIMRLLFR 586 (790)
T ss_pred HHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCc---EEEEECCCCCchhHHHHHHHH
Confidence 4456788998888877654433 34567789999996 7899999999999999 999999999999999999999
Q ss_pred cC-CCeeEEEECCeecC-------ccccccccCCCCCCccchHHHHHHhhhcccccc------------cccccc--ccc
Q 012357 89 FM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ------------VPIYDF--KSS 146 (465)
Q Consensus 89 ll-P~sG~I~lDg~~~~-------~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~------------~p~~d~--~~~ 146 (465)
+. -++|.|.+||+++. |+.||.+|||..+|+ .|+..||.+.+.+...+ .....+ ...
T Consensus 587 ffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~ 665 (790)
T KOG0056|consen 587 FFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYN 665 (790)
T ss_pred HhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhh
Confidence 99 89999999999875 578999999998875 68889998865432110 011111 111
Q ss_pred cccCccccc---cccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCHHHHHHH-----Hhc
Q 012357 147 SRIGYRTLE---VPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEPEEIIHQ-----ISE 216 (465)
Q Consensus 147 ~~~~~~~~~---l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI~~vi~~-----i~d 216 (465)
.++|..-++ .++|||+|||++ .-.|.+.++||.|++||..+.|.|..-+++ .|+|-.-++|+ -+|
T Consensus 666 t~VGERGLkLSGGEKQRVAiARti-----LK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD 740 (790)
T KOG0056|consen 666 TRVGERGLKLSGGEKQRVAIARTI-----LKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNAD 740 (790)
T ss_pred hhhhhcccccCCcchhhHHHHHHH-----hcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheeccc
Confidence 222222222 346999999999 889999999999999999988888876665 35554222222 368
Q ss_pred eEEEccCcEEEecCCcceEE
Q 012357 217 TVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 217 ~V~~m~~G~I~~~g~~aDIi 236 (465)
.+.++.+|.|++.|.+.+++
T Consensus 741 ~ILvi~~G~IvErG~HeeLl 760 (790)
T KOG0056|consen 741 LILVISNGRIVERGRHEELL 760 (790)
T ss_pred EEEEEeCCeEeecCcHHHHH
Confidence 99999999999999999986
No 302
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.86 E-value=1.7e-21 Score=208.99 Aligned_cols=177 Identities=15% Similarity=0.127 Sum_probs=133.3
Q ss_pred EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------ccccccccCCC---CCC
Q 012357 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDP---RLT 118 (465)
Q Consensus 51 ~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~vfQ~p---~l~ 118 (465)
.+++++||++.+|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+||++ .++
T Consensus 266 ~~l~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFTLRKGE---ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEEEcCCc---EEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 47999999999999 99999999999999999999999 99999999998753 24589999997 477
Q ss_pred ccchHHHHHHhhhc-c-cc----ccc---cccccccccccCc-------ccccc---ccchhhhhHhHHhhhhccCccee
Q 012357 119 DYDTLLENIRGLKE-G-KA----VQV---PIYDFKSSSRIGY-------RTLEV---PSSRIVIIEGIYALSEKLRPLID 179 (465)
Q Consensus 119 ~~~tv~enL~~l~~-~-~~----~~~---p~~d~~~~~~~~~-------~~~~l---~~qRVlIaegl~aL~d~~~p~Ld 179 (465)
+..|+.+|+.+... . .. ... ........+..+. ....+ ..||+.||+++ ..+|.++
T Consensus 343 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al-----~~~p~ll 417 (501)
T PRK10762 343 LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGL-----MTRPKVL 417 (501)
T ss_pred CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHH-----hhCCCEE
Confidence 88899999975311 0 00 000 0000000111111 11112 23999999999 8899999
Q ss_pred eeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 180 LRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 180 llDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
++||||++||+.... ++++++.++|.|+ .+.+..+||+++++++|++...+...++
T Consensus 418 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 418 ILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999999998654 5556666678887 7888999999999999999877665543
No 303
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.6e-21 Score=209.26 Aligned_cols=176 Identities=10% Similarity=0.089 Sum_probs=133.8
Q ss_pred EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------ccccccccCCCC---CC
Q 012357 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDPR---LT 118 (465)
Q Consensus 51 ~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~vfQ~p~---l~ 118 (465)
.+++++||++.+|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+||++. ++
T Consensus 267 ~~l~~isl~i~~Ge---~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGE---IVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCc---EEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 48999999999999 99999999999999999999999 89999999998653 246899999974 78
Q ss_pred ccchHHHHHHhhhccc----c--ccc-cc--cccccccccCc-------ccccc---ccchhhhhHhHHhhhhccCccee
Q 012357 119 DYDTLLENIRGLKEGK----A--VQV-PI--YDFKSSSRIGY-------RTLEV---PSSRIVIIEGIYALSEKLRPLID 179 (465)
Q Consensus 119 ~~~tv~enL~~l~~~~----~--~~~-p~--~d~~~~~~~~~-------~~~~l---~~qRVlIaegl~aL~d~~~p~Ld 179 (465)
+..|+.+|+.+..... . ... .. .-....+..+. ....+ ..||+.|++++ ..+|.++
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al-----~~~p~ll 418 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWL-----SEDMKVI 418 (501)
T ss_pred CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHH-----ccCCCEE
Confidence 8899999987532100 0 000 00 00001111111 01112 23999999999 8999999
Q ss_pred eeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcce
Q 012357 180 LRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (465)
Q Consensus 180 llDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aD 234 (465)
++||||+++|+...+.+ ++++.++|.|+ ++.+..+||+++++++|+++..+...+
T Consensus 419 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999976554 56667778888 788999999999999999987765543
No 304
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.6e-21 Score=206.73 Aligned_cols=187 Identities=17% Similarity=0.187 Sum_probs=142.8
Q ss_pred eeeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccccc
Q 012357 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~ 110 (465)
.+++++.|++ .++++++||++++|+ .++|+|+||||||||++.|+|+. |+.|+|.+||.+.. ++++++
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~---~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQ---LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCc---EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 4689999964 499999999999999 99999999999999999999999 89999999998753 577999
Q ss_pred ccCCCCCCccchHHHHHHhhhcccccc--------cccccc-----ccccccC--cccccc-ccchhhhhHhHHhhhhcc
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQ--------VPIYDF-----KSSSRIG--YRTLEV-PSSRIVIIEGIYALSEKL 174 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~--------~p~~d~-----~~~~~~~--~~~~~l-~~qRVlIaegl~aL~d~~ 174 (465)
++|+|.+|+ .|+++|+.+.......+ ....++ ......+ +...+. ..||+++|||+ ..
T Consensus 400 v~Q~p~lf~-gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAl-----l~ 473 (559)
T COG4988 400 VSQNPYLFA-GTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARAL-----LS 473 (559)
T ss_pred eCCCCcccc-ccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHh-----cC
Confidence 999999875 69999998765321100 000111 1111111 111222 24999999999 67
Q ss_pred CcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 175 ~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.+.+.++||||+++|.+....++.-+.+ +++|+ +..+ .-+|+|++|++|+++++|.+.++-
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~-~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDA-ADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHH-hcCCEEEEecCCceeccCCHHHHh
Confidence 7999999999999999987666655543 25666 3433 457999999999999999998874
No 305
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.85 E-value=1.5e-21 Score=231.30 Aligned_cols=189 Identities=17% Similarity=0.193 Sum_probs=144.9
Q ss_pred eeeeeeEeeeC---cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C----------------------
Q 012357 38 PIEDTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P---------------------- 91 (465)
Q Consensus 38 ~v~~~ls~~~g---~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P---------------------- 91 (465)
--.++++|.|. ..++|+++||++++|+ .+||+|+||||||||++.|.|+. |
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~---~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKK---TTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCC---EEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 34688999995 3579999999999999 99999999999999999999999 8
Q ss_pred --------------------------------CeeEEEECCeecC-------ccccccccCCCCCCccchHHHHHHhhhc
Q 012357 92 --------------------------------SIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKE 132 (465)
Q Consensus 92 --------------------------------~sG~I~lDg~~~~-------~~~ig~vfQ~p~l~~~~tv~enL~~l~~ 132 (465)
++|.|.+||.++. ++.++|++|+|.+|+ .|+++||.+...
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC
Confidence 5999999999864 567999999999985 799999998743
Q ss_pred ccc---ccc-----ccccc------ccccccCc--cccc-cccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHH
Q 012357 133 GKA---VQV-----PIYDF------KSSSRIGY--RTLE-VPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR 195 (465)
Q Consensus 133 ~~~---~~~-----p~~d~------~~~~~~~~--~~~~-l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rr 195 (465)
... +.. ...++ .....++. ..++ ...||+.||||+ .-+|.++++||||++||....+.
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARAL-----lr~p~ILLLDEaTSaLD~~sE~~ 1396 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARAL-----LREPKILLLDEATSSLDSNSEKL 1396 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHH-----hcCCCEEEEeCcccccCHHHHHH
Confidence 211 000 00010 11112221 1111 134999999999 88999999999999999998777
Q ss_pred HHHHHHH----cCCCH------HHHHHHHhceEEEccC----cEE-EecCCcceEE
Q 012357 196 VFRDIQR----VGQEP------EEIIHQISETVYPMYK----AFI-EPDLQTAHIK 236 (465)
Q Consensus 196 Ilrdl~e----~G~TI------~~vi~~i~d~V~~m~~----G~I-~~~g~~aDIi 236 (465)
+.+.+.+ +|+|+ ...+. .||+|++|++ |++ ++.|.+.+++
T Consensus 1397 I~~~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1397 IEKTIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHHHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 6655543 47787 44444 5999999999 885 4899998874
No 306
>PTZ00243 ABC transporter; Provisional
Probab=99.85 E-value=2.3e-21 Score=231.12 Aligned_cols=189 Identities=13% Similarity=0.109 Sum_probs=145.1
Q ss_pred eeeeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 38 PIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 38 ~v~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
-..+|++|.|.. ..+|+||||+|++|+ .+||+|+||||||||++.|.+++ |++|.|.+||.++. ++.
T Consensus 1309 I~f~nVsf~Y~~~~~~vL~~vsf~I~~Ge---kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243 1309 LVFEGVQMRYREGLPLVLRGVSFRIAPRE---KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred EEEEEEEEEeCCCCCceeecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhc
Confidence 457889999954 469999999999999 99999999999999999999999 99999999999864 578
Q ss_pred cccccCCCCCCccchHHHHHHhhhccc--cc-------cccc----cccccccccCc--ccccc-ccchhhhhHhHHhhh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGK--AV-------QVPI----YDFKSSSRIGY--RTLEV-PSSRIVIIEGIYALS 171 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~--~~-------~~p~----~d~~~~~~~~~--~~~~l-~~qRVlIaegl~aL~ 171 (465)
+++++|+|.+|+. |+++||....... .+ .... ........++. ..++. ..||+.||||+
T Consensus 1386 I~iVpQdp~LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARAL---- 1460 (1560)
T PTZ00243 1386 FSMIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARAL---- 1460 (1560)
T ss_pred ceEECCCCccccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHH----
Confidence 9999999999975 9999996532110 00 0000 00001111111 11221 34999999999
Q ss_pred hccC-cceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 172 EKLR-PLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 172 d~~~-p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+ |.++++||||+++|+.+.+.+.+-+.+ +++|+ .+.+. .||+|++|++|+|.+.|.+.+++
T Consensus 1461 -L~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~-~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1461 -LKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA-QYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred -hcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 654 799999999999999988777766654 37777 45454 48999999999999999999875
No 307
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.85 E-value=9.3e-21 Score=209.40 Aligned_cols=188 Identities=13% Similarity=0.110 Sum_probs=142.8
Q ss_pred eeeeEeeeC----cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 012357 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (465)
Q Consensus 40 ~~~ls~~~g----~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------- 104 (465)
.+++++.|+ ...+++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.+||+++.
T Consensus 7 ~~nl~~~y~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGE---MVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EeeEEEEeCCCCCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 356666663 2579999999999999 99999999999999999999999 89999999998753
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhh
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~ 171 (465)
++.++|+||++.+++..++.+|+.+........... .-....+.++. ....+ ..||+.|++++
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL---- 159 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARAL---- 159 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHH----
Confidence 246899999999999999999997632111100000 00000111111 11112 24999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++|||++++|+..... ++++++++|.|+ .+.+. +||+++.|++|++.+.+...+..
T Consensus 160 -~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 160 -MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred -hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence 88999999999999999987554 456666668887 55554 69999999999999999998875
No 308
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.85 E-value=3.6e-21 Score=207.08 Aligned_cols=176 Identities=19% Similarity=0.186 Sum_probs=131.3
Q ss_pred EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------ccccccccCCC---CCCc
Q 012357 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDP---RLTD 119 (465)
Q Consensus 52 aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~vfQ~p---~l~~ 119 (465)
+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+||++ .+++
T Consensus 278 ~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGE---ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 5999999999999 99999999999999999999999 89999999998653 23589999985 4777
Q ss_pred cchHHHHHHhhhc---cc---cccccccccccccccCc-------ccccc---ccchhhhhHhHHhhhhccCcceeeeee
Q 012357 120 YDTLLENIRGLKE---GK---AVQVPIYDFKSSSRIGY-------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVS 183 (465)
Q Consensus 120 ~~tv~enL~~l~~---~~---~~~~p~~d~~~~~~~~~-------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDE 183 (465)
..++.+|+..... .. .......-....+..+. ....+ ..||+.|++++ ..+|.++++||
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al-----~~~p~lLlLDE 429 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL-----EASPQLLIVDE 429 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH-----hhCCCEEEECC
Confidence 7899999854210 00 00000000000011111 11112 24999999999 88999999999
Q ss_pred eecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 184 VTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 184 pts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
||++||+...+. +++++.++|.|+ ++.+.++||+++++++|++...++..++
T Consensus 430 Pt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 430 PTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred CCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999987554 556666678888 7889999999999999999877665443
No 309
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.85 E-value=2.5e-21 Score=230.95 Aligned_cols=189 Identities=16% Similarity=0.104 Sum_probs=145.5
Q ss_pred eeeeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 38 PIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 38 ~v~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
--.++++|.|.. ..+|+||||++++|+ .+||+|+||||||||+++|.++. |++|.|.+||.++. |+.
T Consensus 1285 I~f~nVsf~Y~~~~~~vL~~is~~I~~Ge---kiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~ 1361 (1522)
T TIGR00957 1285 VEFRNYCLRYREDLDLVLRHINVTIHGGE---KVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361 (1522)
T ss_pred EEEEEEEEEeCCCCcccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhc
Confidence 346789999954 579999999999999 99999999999999999999999 99999999999865 578
Q ss_pred cccccCCCCCCccchHHHHHHhhhcc--ccc-------ccc----ccccccccccC--cccccc-ccchhhhhHhHHhhh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEG--KAV-------QVP----IYDFKSSSRIG--YRTLEV-PSSRIVIIEGIYALS 171 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~--~~~-------~~p----~~d~~~~~~~~--~~~~~l-~~qRVlIaegl~aL~ 171 (465)
+++++|+|.+|+. |+++||...... ..+ ... .........++ +...+. ..||+.||||+
T Consensus 1362 i~iVpQdp~LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARAL---- 1436 (1522)
T TIGR00957 1362 ITIIPQDPVLFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL---- 1436 (1522)
T ss_pred CeEECCCCcccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHH----
Confidence 9999999999974 999999742110 000 000 00001111111 111221 34999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.-+|.++++||||+++|.++...+.+.+.+ +++|+ .+.+.. ||+|++|++|+|++.|++.+++
T Consensus 1437 -Lr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1437 -LRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred -HcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence 779999999999999999987777766654 37777 454544 7999999999999999988874
No 310
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.85 E-value=1.9e-21 Score=182.57 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=108.1
Q ss_pred CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------ccccccccCCCC-
Q 012357 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDGNFDDPR- 116 (465)
Q Consensus 48 g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------~~~ig~vfQ~p~- 116 (465)
+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|+||++.
T Consensus 3 ~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 79 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGE---VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDD 79 (190)
T ss_pred CccceecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhh
Confidence 45679999999999999 99999999999999999999999 89999999998752 235899999984
Q ss_pred CCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeeee
Q 012357 117 LTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (465)
Q Consensus 117 l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEp 184 (465)
.+...|+.+|+.+........... .-....+..+. ....+ ..||+.|++++ ..+|.+.++|||
T Consensus 80 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p~llllDEP 154 (190)
T TIGR01166 80 QLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAV-----AMRPDVLLLDEP 154 (190)
T ss_pred ccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEcCC
Confidence 233469999997642111000000 00000111111 11112 24999999999 889999999999
Q ss_pred ecCccHHHHHHHH---HHHHHcCCCH
Q 012357 185 TGGVHFDLVKRVF---RDIQRVGQEP 207 (465)
Q Consensus 185 ts~LD~~l~rrIl---rdl~e~G~TI 207 (465)
|+++|+....++. ++++++|.|+
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~ti 180 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTV 180 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEE
Confidence 9999998766554 4444445553
No 311
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=9.8e-22 Score=222.44 Aligned_cols=217 Identities=18% Similarity=0.166 Sum_probs=163.6
Q ss_pred CCCCccccccccceeeeeccCc----ceeeceeeeeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHH
Q 012357 10 DSPRRRPGLLRDQVQLVKKKDS----DRYEIVPIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVF 82 (465)
Q Consensus 10 ~~~~~~~~l~~~~~~l~~~~~~----k~y~~~~v~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL 82 (465)
.+.++.+.++..++.+...+.+ ..++..--.++++|.|.. .++++|+||++++|+ .++|+|||||||||.
T Consensus 956 ~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~Gq---TvALVG~SGsGKSTv 1032 (1228)
T KOG0055|consen 956 IAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQ---TVALVGPSGSGKSTV 1032 (1228)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCC---EEEEECCCCCCHHHH
Confidence 3456677788888777776522 245556677899999964 569999999999999 999999999999999
Q ss_pred HHHHHhcC-CCeeEEEECCeecC-------ccccccccCCCCCCccchHHHHHHhhhccccc----------cccc----
Q 012357 83 TEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV----------QVPI---- 140 (465)
Q Consensus 83 ~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~----------~~p~---- 140 (465)
+.+|-... |++|.|.+||+++. |++++.+-|+|.+|+ .|++|||.+....-.. ....
T Consensus 1033 I~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~s 1111 (1228)
T KOG0055|consen 1033 ISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISS 1111 (1228)
T ss_pred HHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhc
Confidence 99999999 99999999999865 678999999999996 6999999997322000 0000
Q ss_pred cccccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHH--HcCCCH------HH
Q 012357 141 YDFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ--RVGQEP------EE 209 (465)
Q Consensus 141 ~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~--e~G~TI------~~ 209 (465)
........++.+-..+ .+||++||||+ .-+|.++++||.|++||.+--+-+..-+. ..|+|- +.
T Consensus 1112 LP~GyDT~vGerG~QLSGGQKQRIAIARAi-----lRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLS 1186 (1228)
T KOG0055|consen 1112 LPQGYDTRVGERGVQLSGGQKQRIAIARAI-----LRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLS 1186 (1228)
T ss_pred CcCcccCccCcccCcCCchHHHHHHHHHHH-----HcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchh
Confidence 0011112222211122 34999999999 88999999999999999986554443332 347665 34
Q ss_pred HHHHHhceEEEccCcEEEecCCcceEE
Q 012357 210 IIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 210 vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.+ +-||.++++.+|+|+|.|.|.+++
T Consensus 1187 TI-qnaD~I~Vi~~G~VvE~GtH~~L~ 1212 (1228)
T KOG0055|consen 1187 TI-QNADVIAVLKNGKVVEQGTHDELL 1212 (1228)
T ss_pred hh-hcCCEEEEEECCEEEecccHHHHH
Confidence 34 358999999999999999999986
No 312
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.85 E-value=4.7e-21 Score=183.94 Aligned_cols=170 Identities=11% Similarity=0.007 Sum_probs=122.5
Q ss_pred EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEE-ECCeecCccccccccCCCCCCccchHHHHHH
Q 012357 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-MDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (465)
Q Consensus 51 ~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~-lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL~ 128 (465)
+++++|||++++|+ ++||+||||||||||+++|+|+. |++|.|. ++|.... +.+.+.+++..|+.+|+.
T Consensus 1 ~vl~~vs~~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~------~~~~~~l~~~ltv~enl~ 71 (213)
T PRK15177 1 VVLDKTDFVMGYHE---HIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP------LGANSFILPGLTGEENAR 71 (213)
T ss_pred CeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec------cccccccCCcCcHHHHHH
Confidence 37899999999999 99999999999999999999999 9999997 7765431 224566788889999998
Q ss_pred hhhccccccccccccccccccC------cccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHH
Q 012357 129 GLKEGKAVQVPIYDFKSSSRIG------YRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRD 199 (465)
Q Consensus 129 ~l~~~~~~~~p~~d~~~~~~~~------~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrd 199 (465)
+....................+ .....+ ..||+.+++++ ..+|.+.++|||++++|+...+.+...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al-----~~~p~llllDEP~~~lD~~~~~~~~~~ 146 (213)
T PRK15177 72 MMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINL-----LLPCRLYIADGKLYTGDNATQLRMQAA 146 (213)
T ss_pred HHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHH-----hcCCCEEEECCCCccCCHHHHHHHHHH
Confidence 7543111110000000000000 001111 24999999999 889999999999999999876665544
Q ss_pred HHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcce
Q 012357 200 IQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (465)
Q Consensus 200 l~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aD 234 (465)
+.+ ++.++ +..+..+||++++|++|++...++..+
T Consensus 147 l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 189 (213)
T PRK15177 147 LACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQ 189 (213)
T ss_pred HHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHH
Confidence 432 24555 778888999999999999987665443
No 313
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.85 E-value=5.1e-21 Score=206.36 Aligned_cols=173 Identities=17% Similarity=0.181 Sum_probs=130.4
Q ss_pred eeeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccc
Q 012357 39 IEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (465)
Q Consensus 39 v~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~i 108 (465)
-.++++|.|+. .++++++||++++|+ .++|+|+||||||||++.|+|+. |++|.|.+||.++. ++.+
T Consensus 322 ~~~~v~f~y~~~~~~il~~i~l~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 322 EFSGLSVAYPGRRAPALRPVSFTVPPGE---RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred EEEEEEEECCCCCcccccceeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 46789999964 479999999999999 99999999999999999999999 99999999999754 4579
Q ss_pred ccccCCCCCCccchHHHHHHhhhcccc---ccc-----cc------cccccccccCcccccc---ccchhhhhHhHHhhh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGKA---VQV-----PI------YDFKSSSRIGYRTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~~---~~~-----p~------~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~ 171 (465)
+|++|+|.+|+ .|+++|+........ ... .. ........++.....+ ..||+.|||++
T Consensus 399 ~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal---- 473 (529)
T TIGR02857 399 AWVPQHPFLFA-GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAF---- 473 (529)
T ss_pred EEEcCCCcccC-cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHH----
Confidence 99999999886 699999987532110 000 00 0000111111111112 34999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEc
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPM 221 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m 221 (465)
..+|.++++||||+++|+...+++.+.+.+ +|+|+ .+.+ +.||++++|
T Consensus 474 -~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~-~~~d~i~~l 529 (529)
T TIGR02857 474 -LRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALA-ERADRIVVL 529 (529)
T ss_pred -hcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-HhCCEEEeC
Confidence 889999999999999999998888766654 46776 4444 458887764
No 314
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.85 E-value=6.5e-21 Score=204.02 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=128.7
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------ccccccc
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~v 111 (465)
+++++.+ ..+++++||.+.+|+ ++||+|+||||||||+++|+|+. |++|.|.++|.++. ++.++|+
T Consensus 254 ~~l~~~~--~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~ 328 (491)
T PRK10982 254 RNLTSLR--QPSIRDVSFDLHKGE---ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALV 328 (491)
T ss_pred eCccccc--CcccceeeEEEeCCc---EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEc
Confidence 4455542 458999999999999 99999999999999999999999 89999999998753 2348899
Q ss_pred cCCC---CCCccchHHHH-----HHhhhccccc-c-cccc--------ccccc-cccCcccccc---ccchhhhhHhHHh
Q 012357 112 FDDP---RLTDYDTLLEN-----IRGLKEGKAV-Q-VPIY--------DFKSS-SRIGYRTLEV---PSSRIVIIEGIYA 169 (465)
Q Consensus 112 fQ~p---~l~~~~tv~en-----L~~l~~~~~~-~-~p~~--------d~~~~-~~~~~~~~~l---~~qRVlIaegl~a 169 (465)
||++ .+++..++.+| +......... . .... .+... .........+ ..||+.|++++
T Consensus 329 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al-- 406 (491)
T PRK10982 329 TEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWL-- 406 (491)
T ss_pred CCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHH--
Confidence 9985 35676776655 3221110000 0 0000 00000 0001011112 24999999999
Q ss_pred hhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEEe
Q 012357 170 LSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEP 228 (465)
Q Consensus 170 L~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~ 228 (465)
..+|.++++||||+++|+.....+ ++++.++|.|+ ++.+..+||++++|++|+++.
T Consensus 407 ---~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 407 ---LTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred ---hcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999876554 56667778888 788889999999999999874
No 315
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.85 E-value=8.1e-21 Score=190.01 Aligned_cols=178 Identities=15% Similarity=0.099 Sum_probs=130.4
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~ 118 (465)
.+++++. ...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++| .++|++|++.++
T Consensus 42 i~nls~~--~~~vL~~vs~~i~~Ge---~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------~i~yv~q~~~l~ 110 (282)
T cd03291 42 FSNLCLV--GAPVLKNINLKIEKGE---MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------RISFSSQFSWIM 110 (282)
T ss_pred EEEEEEe--cccceeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------EEEEEeCccccc
Confidence 4666664 3679999999999999 99999999999999999999999 8999999988 489999999887
Q ss_pred ccchHHHHHHhhhcccccccc-ccc-ccccc-----------ccCcccccc---ccchhhhhHhHHhhhhccCcceeeee
Q 012357 119 DYDTLLENIRGLKEGKAVQVP-IYD-FKSSS-----------RIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRV 182 (465)
Q Consensus 119 ~~~tv~enL~~l~~~~~~~~p-~~d-~~~~~-----------~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllD 182 (465)
+. ++.+|+.+.......... ..+ ..... ........+ ..||+.|++++ ..+|.++++|
T Consensus 111 ~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL-----~~~p~iLiLD 184 (282)
T cd03291 111 PG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAV-----YKDADLYLLD 184 (282)
T ss_pred cc-CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHH-----hcCCCEEEEE
Confidence 74 999998763211000000 000 00000 000000112 24999999999 8899999999
Q ss_pred eeecCccHHHHHHHHHHH---HHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 183 SVTGGVHFDLVKRVFRDI---QRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 183 Epts~LD~~l~rrIlrdl---~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
||++++|+.....++..+ ..+|.|+ .+.+ .+||++++|.+|++...|...++
T Consensus 185 EPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~ 245 (282)
T cd03291 185 SPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHL-KKADKILILHEGSSYFYGTFSEL 245 (282)
T ss_pred CCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHH-HhCCEEEEEECCEEEEECCHHHH
Confidence 999999998766554322 1246777 4445 47999999999999988877665
No 316
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.85 E-value=3.9e-21 Score=207.28 Aligned_cols=161 Identities=20% Similarity=0.182 Sum_probs=122.8
Q ss_pred eeeeeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------ccccc
Q 012357 38 PIEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIID 109 (465)
Q Consensus 38 ~v~~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig 109 (465)
-..++++|.|+. ..+|+|+||++++|+ .++|+||||||||||++.|.|+. |++|.|.+||.++. ++.++
T Consensus 335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~---~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGVSLDLPPGE---RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred EEEEEEEEecCCCCceeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE
Confidence 346889999964 569999999999999 99999999999999999999999 99999999998764 46799
Q ss_pred cccCCCCCCccchHHHHHHhhhcccc---cc-------cc----ccccccccccCc--cccc-cccchhhhhHhHHhhhh
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKA---VQ-------VP----IYDFKSSSRIGY--RTLE-VPSSRIVIIEGIYALSE 172 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~---~~-------~p----~~d~~~~~~~~~--~~~~-l~~qRVlIaegl~aL~d 172 (465)
|++|+|.+|+ .|+++||.+...... +. .. .........++. ...+ ...||+.||||+
T Consensus 412 ~V~Q~~~lF~-~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal----- 485 (529)
T TIGR02868 412 VFAQDAHLFD-TTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL----- 485 (529)
T ss_pred EEccCccccc-ccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH-----
Confidence 9999999886 599999988532110 00 00 000011111111 1111 134999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHHHHHHHHHc--CCCH
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEP 207 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrIlrdl~e~--G~TI 207 (465)
.-+|.++++||||+++|++...++.+.+.+. ++|+
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~Tv 522 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTV 522 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 7899999999999999999988888777643 4443
No 317
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=7e-22 Score=192.50 Aligned_cols=204 Identities=14% Similarity=0.147 Sum_probs=138.5
Q ss_pred eeeeccCcceeec-------eeeeee-eEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCee
Q 012357 24 QLVKKKDSDRYEI-------VPIEDT-LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (465)
Q Consensus 24 ~l~~~~~~k~y~~-------~~v~~~-ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG 94 (465)
++..++.+|.|-. +..+++ +.+.+....|++||||+|++|+ ++|.+|+|||||||++|+|.|++ |++|
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~---ivgflGaNGAGKSTtLKmLTGll~p~~G 79 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGE---IVGFLGANGAGKSTTLKMLTGLLLPTSG 79 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCc---EEEEEcCCCCcchhhHHHHhCccccCCC
Confidence 4556677777732 222333 3344455679999999999999 99999999999999999999999 9999
Q ss_pred EEEECCeecCc------ccccccc-CCCCCCccchHHHHHHhhhccccccccc-----------cccccccccCcccccc
Q 012357 95 VITMDNYNDSS------RIIDGNF-DDPRLTDYDTLLENIRGLKEGKAVQVPI-----------YDFKSSSRIGYRTLEV 156 (465)
Q Consensus 95 ~I~lDg~~~~~------~~ig~vf-Q~p~l~~~~tv~enL~~l~~~~~~~~p~-----------~d~~~~~~~~~~~~~l 156 (465)
.|.+.|+...+ +.+++++ |...+++...+.+.+.-.+.-..+.... .+....-+..-.++++
T Consensus 80 ~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSl 159 (325)
T COG4586 80 KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSL 159 (325)
T ss_pred eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccc
Confidence 99999997653 2355543 2233333223333322221111110000 1110000000012222
Q ss_pred -ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHH---HHHHHHHHHHc-CCCH------HHHHHHHhceEEEccCcE
Q 012357 157 -PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL---VKRVFRDIQRV-GQEP------EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 157 -~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l---~rrIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~ 225 (465)
...|+=++.|+ ..+|.++++||||-|||+.. +++.++.++++ +.|+ ++-+.+||+||+.++.|+
T Consensus 160 GqRmraeLaaaL-----Lh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gq 234 (325)
T COG4586 160 GQRMRAELAAAL-----LHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQ 234 (325)
T ss_pred hHHHHHHHHHHh-----cCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCc
Confidence 23678889999 89999999999999999975 56677777754 8888 788999999999999999
Q ss_pred EEecCCcceE
Q 012357 226 IEPDLQTAHI 235 (465)
Q Consensus 226 I~~~g~~aDI 235 (465)
++.+|+.+.+
T Consensus 235 lv~dg~l~~l 244 (325)
T COG4586 235 LVFDGTLAQL 244 (325)
T ss_pred EeecccHHHH
Confidence 9999887766
No 318
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.84 E-value=1e-20 Score=176.99 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=112.6
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCCc
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~ 119 (465)
+++++.|+...+++++ +++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.. +++++|++.
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~q~~~--- 71 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGE---VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----PVYKPQYID--- 71 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----EEEEcccCC---
Confidence 5788899988999985 8999999 99999999999999999999999 999999999854 677777643
Q ss_pred cchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHH--
Q 012357 120 YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF-- 197 (465)
Q Consensus 120 ~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIl-- 197 (465)
.++ ...||+.+++++ ..+|.+.++||||+++|+.....+.
T Consensus 72 ----------------------------LSg-----Gq~qrv~laral-----~~~p~lllLDEPts~LD~~~~~~l~~~ 113 (177)
T cd03222 72 ----------------------------LSG-----GELQRVAIAAAL-----LRNATFYLFDEPSAYLDIEQRLNAARA 113 (177)
T ss_pred ----------------------------CCH-----HHHHHHHHHHHH-----hcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 112 123899999999 8899999999999999998765544
Q ss_pred -HHHHHcC-CCH------HHHHHHHhceEEEccCcE
Q 012357 198 -RDIQRVG-QEP------EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 198 -rdl~e~G-~TI------~~vi~~i~d~V~~m~~G~ 225 (465)
+++.+++ .|+ .+.+..+||++++++++-
T Consensus 114 l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~ 149 (177)
T cd03222 114 IRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEP 149 (177)
T ss_pred HHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCC
Confidence 5555554 776 778888999999998763
No 319
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.84 E-value=5e-21 Score=184.66 Aligned_cols=169 Identities=18% Similarity=0.250 Sum_probs=123.6
Q ss_pred eEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--ccccccccCCCCCCc--cchHHHHHHhhhc
Q 012357 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPRLTD--YDTLLENIRGLKE 132 (465)
Q Consensus 58 L~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--~~~ig~vfQ~p~l~~--~~tv~enL~~l~~ 132 (465)
|++++|+ ++||+|+||||||||+++|+|+. |++|.|.+||.+.. ++.++|+||++.++. ..++.+|+.....
T Consensus 1 l~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGE---LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4678999 99999999999999999999999 89999999998653 356999999987643 3689999876321
Q ss_pred cc--cc---cccccc--cccccccCcc------cccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHH-
Q 012357 133 GK--AV---QVPIYD--FKSSSRIGYR------TLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR- 195 (465)
Q Consensus 133 ~~--~~---~~p~~d--~~~~~~~~~~------~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rr- 195 (465)
.. .. ...... ....+..+.. ...+ ..||+.|++++ ..+|.+.++||||+++|+.....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARAL-----ATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCcccCCHHHHHHH
Confidence 00 00 000000 0001111111 1112 23999999999 89999999999999999987554
Q ss_pred --HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 196 --VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 196 --Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+++++.++|.|+ .+.+..+||+++++ +|+++..++..++
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 445665668887 67788999999999 8999887776655
No 320
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.84 E-value=1.4e-20 Score=204.60 Aligned_cols=176 Identities=16% Similarity=0.170 Sum_probs=133.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCC-CC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP-RL 117 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p-~l 117 (465)
.+++++.|+...++++|||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.+++. ..++|++|++ .+
T Consensus 327 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----~~i~~v~q~~~~~ 399 (556)
T PRK11819 327 AENLSKSFGDRLLIDDLSFSLPPGG---IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET----VKLAYVDQSRDAL 399 (556)
T ss_pred EEeEEEEECCeeeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----eEEEEEeCchhhc
Confidence 5778999988899999999999999 99999999999999999999999 99999998542 2589999997 67
Q ss_pred CccchHHHHHHhhhccccccc-cccccccccccCc-------ccccc---ccchhhhhHhHHhhhhccCcceeeeeeeec
Q 012357 118 TDYDTLLENIRGLKEGKAVQV-PIYDFKSSSRIGY-------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~~~~~~-p~~d~~~~~~~~~-------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts 186 (465)
++..|+.+++.+......... ........+..+. ....+ ..||+.|++++ ..+|.++++||||+
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al-----~~~p~lllLDEPt~ 474 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTL-----KQGGNVLLLDEPTN 474 (556)
T ss_pred CCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH-----hcCCCEEEEcCCCC
Confidence 778899999986431110000 0000001111111 01112 23999999999 88999999999999
Q ss_pred CccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccC-cEEE
Q 012357 187 GVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYK-AFIE 227 (465)
Q Consensus 187 ~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~-G~I~ 227 (465)
+||+.....+.+-+.+.+.|+ .+.+..+||+++++++ |.+.
T Consensus 475 ~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 475 DLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 999998887777666653355 6788999999999986 6654
No 321
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.84 E-value=1.3e-20 Score=204.20 Aligned_cols=178 Identities=13% Similarity=0.145 Sum_probs=130.0
Q ss_pred eeeeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 39 IEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 39 v~~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
-.++++|.|+. ..+++++||++++|+ .++|+|+||||||||+++|+|+. |++|.|.+||.++. ++.++
T Consensus 324 ~~~~v~f~y~~~~~~l~~i~~~i~~G~---~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 324 ELRNVTFAYQDNGFSVGPINLTIKRGE---LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred EEEEEEEEeCCCCeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE
Confidence 46789999954 579999999999999 99999999999999999999999 99999999999764 45799
Q ss_pred cccCCCCCCccchHHHH--------HHhhhccccccccccccccccc-cCccccc-cccchhhhhHhHHhhhhccCccee
Q 012357 110 GNFDDPRLTDYDTLLEN--------IRGLKEGKAVQVPIYDFKSSSR-IGYRTLE-VPSSRIVIIEGIYALSEKLRPLID 179 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~en--------L~~l~~~~~~~~p~~d~~~~~~-~~~~~~~-l~~qRVlIaegl~aL~d~~~p~Ld 179 (465)
+++|++.+|+. |+.+| +.......... . .....+. ..+...+ ...||+.|||++ ..+|.++
T Consensus 401 ~v~q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~l~--~-~~~~~~~~~~G~~LSgGq~qRl~lARal-----~~~~~il 471 (547)
T PRK10522 401 AVFTDFHLFDQ-LLGPEGKPANPALVEKWLERLKMA--H-KLELEDGRISNLKLSKGQKKRLALLLAL-----AEERDIL 471 (547)
T ss_pred EEecChhHHHH-hhccccCchHHHHHHHHHHHcCCc--h-hhhccccCCCCCCCCHHHHHHHHHHHHH-----hcCCCEE
Confidence 99999987753 55444 11000000000 0 0000000 0011111 234999999999 8899999
Q ss_pred eeeeeecCccHHHHHHHHHHHH----HcCCCH------HHHHHHHhceEEEccCcEEEec
Q 012357 180 LRVSVTGGVHFDLVKRVFRDIQ----RVGQEP------EEIIHQISETVYPMYKAFIEPD 229 (465)
Q Consensus 180 llDEpts~LD~~l~rrIlrdl~----e~G~TI------~~vi~~i~d~V~~m~~G~I~~~ 229 (465)
++||||+++|+.....+.+.+. +.|.|+ .+. ...||+++++++|++.+.
T Consensus 472 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~-~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 472 LLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY-FIHADRLLEMRNGQLSEL 530 (547)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH-HHhCCEEEEEECCEEEEe
Confidence 9999999999998776654443 247777 443 457999999999998765
No 322
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.84 E-value=6.7e-21 Score=225.81 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=131.1
Q ss_pred eeeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEEC-CeecC-------cc
Q 012357 39 IEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD-NYNDS-------SR 106 (465)
Q Consensus 39 v~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lD-g~~~~-------~~ 106 (465)
-.++++|.|+. .++|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++ |.++. ++
T Consensus 384 ~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge---~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~ 460 (1466)
T PTZ00265 384 QFKNVRFHYDTRKDVEIYKDLNFTLTEGK---TYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRS 460 (1466)
T ss_pred EEEEEEEEcCCCCCCceeccceEEEcCCC---EEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHH
Confidence 45789999974 469999999999999 99999999999999999999999 999999994 56542 45
Q ss_pred ccccccCCCCCCccchHHHHHHhhhcccc-------------------------c-------------------------
Q 012357 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKA-------------------------V------------------------- 136 (465)
Q Consensus 107 ~ig~vfQ~p~l~~~~tv~enL~~l~~~~~-------------------------~------------------------- 136 (465)
.+++++|+|.+|+ .|+++||.+...... .
T Consensus 461 ~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 539 (1466)
T PTZ00265 461 KIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRK 539 (1466)
T ss_pred hccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccc
Confidence 7999999999997 599999987431000 0
Q ss_pred ---ccc---ccc----ccccc-----------ccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHH
Q 012357 137 ---QVP---IYD----FKSSS-----------RIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (465)
Q Consensus 137 ---~~p---~~d----~~~~~-----------~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l 192 (465)
... ..+ ...++ .++.....+ ..||+.||||+ ..+|.++++||||++||+..
T Consensus 540 ~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAl-----l~~P~ILlLDEpTSaLD~~s 614 (1466)
T PTZ00265 540 NYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAI-----IRNPKILILDEATSSLDNKS 614 (1466)
T ss_pred ccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHH-----hcCCCEEEEeCcccccCHHH
Confidence 000 000 00000 011111112 24999999999 88999999999999999997
Q ss_pred HHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcE
Q 012357 193 VKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 193 ~rrIl---rdl~e-~G~TI------~~vi~~i~d~V~~m~~G~ 225 (465)
...+. +++.+ +|+|+ .+.+ +.||++++|++|+
T Consensus 615 e~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 615 EYLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNRE 656 (1466)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCc
Confidence 66555 44443 47777 5555 5899999999973
No 323
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.84 E-value=1.8e-20 Score=203.55 Aligned_cols=176 Identities=15% Similarity=0.179 Sum_probs=134.1
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCC-C
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR-L 117 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~-l 117 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+++. ..++|++|++. +
T Consensus 325 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~----~~i~~v~q~~~~~ 397 (552)
T TIGR03719 325 AENLSKGFGDKLLIDDLSFKLPPGG---IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET----VKLAYVDQSRDAL 397 (552)
T ss_pred EeeEEEEECCeeeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc----eEEEEEeCCcccc
Confidence 5778999988899999999999999 99999999999999999999999 99999998542 26899999974 7
Q ss_pred CccchHHHHHHhhhcccccc-ccccccccccccCcc-------cccc---ccchhhhhHhHHhhhhccCcceeeeeeeec
Q 012357 118 TDYDTLLENIRGLKEGKAVQ-VPIYDFKSSSRIGYR-------TLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~~~~~-~p~~d~~~~~~~~~~-------~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts 186 (465)
++..|+.+++.+........ ............+.. ...+ ..|||.|++++ ...|.++++||||+
T Consensus 398 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al-----~~~p~lllLDEPt~ 472 (552)
T TIGR03719 398 DPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTL-----KSGGNVLLLDEPTN 472 (552)
T ss_pred CCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH-----hhCCCEEEEeCCCC
Confidence 77889999998743211000 000000111111111 1112 23999999999 89999999999999
Q ss_pred CccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccC-cEEE
Q 012357 187 GVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYK-AFIE 227 (465)
Q Consensus 187 ~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~-G~I~ 227 (465)
+||+.....+.+-+.+.+.|+ .+.+.++||++++|++ |.+.
T Consensus 473 ~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 473 DLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 999998888877776654466 7788899999999986 4654
No 324
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=1.5e-20 Score=177.45 Aligned_cols=151 Identities=15% Similarity=0.063 Sum_probs=110.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---ccccccccCCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDGNFDDP 115 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---~~~ig~vfQ~p 115 (465)
.+++++.|+...+++ +||++++|+ ++||+|+||||||||+++|+|+. |++|.|.++|.++. .+.++|++|++
T Consensus 4 ~~~l~~~~~~~~l~~-vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 4 LHQLQFNIEQKNLFD-LSITFLPSA---ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred EEEeeEEECCcEEEE-EEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 466778887665665 999999999 99999999999999999999999 99999999998754 24578999998
Q ss_pred CCCccchHHHHHHhhhcccccccccccc----ccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCc
Q 012357 116 RLTDYDTLLENIRGLKEGKAVQVPIYDF----KSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGV 188 (465)
Q Consensus 116 ~l~~~~tv~enL~~l~~~~~~~~p~~d~----~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~L 188 (465)
.+++..|+.+|+.+.............. ............+ ..||+.|++++ ..+|.++++||||+++
T Consensus 80 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al-----~~~p~~lllDEP~~~L 154 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLI-----ACQSDLWLLDEVETNL 154 (195)
T ss_pred CCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCcccC
Confidence 8888899999998743211100000000 0000000011111 24999999999 8899999999999999
Q ss_pred cHHHHHHHHHH
Q 012357 189 HFDLVKRVFRD 199 (465)
Q Consensus 189 D~~l~rrIlrd 199 (465)
|+.....+..-
T Consensus 155 D~~~~~~l~~~ 165 (195)
T PRK13541 155 SKENRDLLNNL 165 (195)
T ss_pred CHHHHHHHHHH
Confidence 99876555433
No 325
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.84 E-value=2.2e-20 Score=206.09 Aligned_cols=178 Identities=10% Similarity=0.097 Sum_probs=134.3
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCC-C
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP-R 116 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p-~ 116 (465)
-.+++++.|+...+++++||++.+|+ ++||+||||||||||+++|+|++ |++|.|.+ |.. -.++|++|++ .
T Consensus 321 ~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~---~~i~y~~q~~~~ 393 (635)
T PRK11147 321 EMENVNYQIDGKQLVKDFSAQVQRGD---KIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK---LEVAYFDQHRAE 393 (635)
T ss_pred EEeeeEEEECCeEEEcCcEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC---cEEEEEeCcccc
Confidence 34789999988899999999999999 99999999999999999999999 99999998 432 2589999986 4
Q ss_pred CCccchHHHHHHhhhcccccc-ccccccccccccCc-------ccccc---ccchhhhhHhHHhhhhccCcceeeeeeee
Q 012357 117 LTDYDTLLENIRGLKEGKAVQ-VPIYDFKSSSRIGY-------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (465)
Q Consensus 117 l~~~~tv~enL~~l~~~~~~~-~p~~d~~~~~~~~~-------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpt 185 (465)
+++..|+.+++.......... ....-.......+. ....+ ..||+.|++++ ..+|.++++||||
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al-----~~~p~lLlLDEPt 468 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLF-----LKPSNLLILDEPT 468 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHH-----hcCCCEEEEcCCC
Confidence 777889999997642211000 00000000001110 11112 24999999999 8899999999999
Q ss_pred cCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEcc-CcEEEe
Q 012357 186 GGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMY-KAFIEP 228 (465)
Q Consensus 186 s~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~-~G~I~~ 228 (465)
++||+.....+.+-+.+.+.|+ ...+..+||+++.+. +|.+..
T Consensus 469 ~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 469 NDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGR 518 (635)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEE
Confidence 9999998777776666655566 678899999999997 788754
No 326
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2e-20 Score=206.40 Aligned_cols=184 Identities=15% Similarity=0.181 Sum_probs=135.3
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCC--
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP-- 115 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p-- 115 (465)
-.+++++.|+...+++++||.+.+|+ ++||+||||||||||+++|+|++ |++|.|.+++. ..+||++|++
T Consensus 314 ~~~~l~~~y~~~~il~~isl~i~~Ge---~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----~~igy~~Q~~~~ 386 (638)
T PRK10636 314 KMEKVSAGYGDRIILDSIKLNLVPGS---RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG----IKLGYFAQHQLE 386 (638)
T ss_pred EEEeeEEEeCCeeeeccceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC----EEEEEecCcchh
Confidence 35788999998899999999999999 99999999999999999999999 89999999742 3689999974
Q ss_pred CCCccchHHHHHHhhhcccc---cc--ccccccccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecC
Q 012357 116 RLTDYDTLLENIRGLKEGKA---VQ--VPIYDFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGG 187 (465)
Q Consensus 116 ~l~~~~tv~enL~~l~~~~~---~~--~p~~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~ 187 (465)
.+.+..++.+++........ +. ...+.+.. .........+ ..|||.|++++ ...|.++++||||++
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~-~~~~~~~~~LSgGekqRl~La~~l-----~~~p~lLlLDEPt~~ 460 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG-DKVTEETRRFSGGEKARLVLALIV-----WQRPNLLLLDEPTNH 460 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh-hHhcCchhhCCHHHHHHHHHHHHH-----hcCCCEEEEcCCCCC
Confidence 23445577776543211000 00 00011100 0000011112 24999999999 889999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEE-ecCCcceE
Q 012357 188 VHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIE-PDLQTAHI 235 (465)
Q Consensus 188 LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~-~~g~~aDI 235 (465)
||+.....+..-+.+.+.|+ ...+..+||+++++++|.+. ..|+..+.
T Consensus 461 LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 461 LDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 99998877776666654476 77899999999999999986 55655554
No 327
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.83 E-value=1.4e-20 Score=224.09 Aligned_cols=189 Identities=10% Similarity=0.060 Sum_probs=146.0
Q ss_pred eeeeeeEeeeC--cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------cccc
Q 012357 38 PIEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRII 108 (465)
Q Consensus 38 ~v~~~ls~~~g--~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~-------~~~i 108 (465)
-..++++|.|. ...+|+||||+|++|+ .+||+|+||||||||+++|.|+.+.+|.|.+||.++. |+.+
T Consensus 1218 I~f~nVs~~Y~~~~~~vL~~is~~I~~Ge---kvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQ---RVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred EEEEEEEEEeCCCCcceeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhce
Confidence 34688999995 3689999999999999 9999999999999999999999977899999999864 5679
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc--cc-------ccc----ccccccccccC--cccccc-ccchhhhhHhHHhhhh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGK--AV-------QVP----IYDFKSSSRIG--YRTLEV-PSSRIVIIEGIYALSE 172 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~--~~-------~~p----~~d~~~~~~~~--~~~~~l-~~qRVlIaegl~aL~d 172 (465)
++++|+|.+|+ .|+++||....... .+ ... .........++ +...+. ..||+.||||+
T Consensus 1295 s~IpQdp~LF~-GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARAL----- 1368 (1490)
T TIGR01271 1295 GVIPQKVFIFS-GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI----- 1368 (1490)
T ss_pred EEEeCCCccCc-cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHH-----
Confidence 99999999997 59999996432100 00 000 00000111111 111221 34999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHHHHHHHHHc--CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrIlrdl~e~--G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.-+|.++++||||+++|..+-..+.+.+.+. ++|+ .+.+.. ||+|++|++|+|++.|.+.++.
T Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1369 LSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHH
Confidence 7899999999999999999888877777653 7787 555554 8999999999999999988874
No 328
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.83 E-value=6.5e-21 Score=198.47 Aligned_cols=203 Identities=18% Similarity=0.196 Sum_probs=151.5
Q ss_pred CCCCccccccccceeeeeccCcceeeceeeeeeeEee-eC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHH
Q 012357 10 DSPRRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFE-KG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL 87 (465)
Q Consensus 10 ~~~~~~~~l~~~~~~l~~~~~~k~y~~~~v~~~ls~~-~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~ 87 (465)
.+.++++-|.+++-.|.+++. ++- -| .+++++++||.+.+|+ .+||+||||||||||+|.|.
T Consensus 320 p~~~~~m~LP~P~g~L~Ve~l-------------~~~PPg~~~pil~~isF~l~~G~---~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 320 PAAAERMPLPAPQGALSVERL-------------TAAPPGQKKPILKGISFALQAGE---ALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred ccccCCCCCCCCCceeeEeee-------------eecCCCCCCcceecceeEecCCc---eEEEECCCCccHHHHHHHHH
Confidence 355667777777766666552 222 22 4689999999999999 99999999999999999999
Q ss_pred hcC-CCeeEEEECCeecC-------ccccccccCCCCCCccchHHHHHHhhhcccccc-----------------cc-cc
Q 012357 88 NFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ-----------------VP-IY 141 (465)
Q Consensus 88 gll-P~sG~I~lDg~~~~-------~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~-----------------~p-~~ 141 (465)
|.. |.+|.|.+||.++. -+.|||.||+-++|+. |+.+||+.+.....-+ .| -|
T Consensus 384 G~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GY 462 (580)
T COG4618 384 GIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGY 462 (580)
T ss_pred cccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCc
Confidence 999 99999999998764 2579999999999975 9999998765321110 00 11
Q ss_pred ccccccccCcccccc-ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHH---HHHHHHHHHHcCCCH-----HHHHH
Q 012357 142 DFKSSSRIGYRTLEV-PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL---VKRVFRDIQRVGQEP-----EEIIH 212 (465)
Q Consensus 142 d~~~~~~~~~~~~~l-~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l---~rrIlrdl~e~G~TI-----~~vi~ 212 (465)
|-..++ ++..++. ..||+.++||+ --+|.+.++|||.++||..- ..+-+..++.+|.|+ .-.+-
T Consensus 463 dT~iG~--~G~~LSgGQRQRIaLARAl-----YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L 535 (580)
T COG4618 463 DTRIGE--GGATLSGGQRQRIALARAL-----YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSAL 535 (580)
T ss_pred cCccCC--CCCCCCchHHHHHHHHHHH-----cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 111110 1122222 34999999999 66999999999999999874 445556677788777 22344
Q ss_pred HHhceEEEccCcEEEecCCcceEE
Q 012357 213 QISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 213 ~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|+|.+|++|.+...|+..+++
T Consensus 536 ~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 536 ASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred hhcceeeeecCChHHhcCCHHHHH
Confidence 568999999999999888877764
No 329
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.83 E-value=1.1e-20 Score=202.23 Aligned_cols=182 Identities=12% Similarity=-0.009 Sum_probs=128.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCC--CeeEEEECCeecC--------ccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDS--------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP--~sG~I~lDg~~~~--------~~~ig 109 (465)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|+.| ++|.|.++|.+.. ++.++
T Consensus 263 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 339 (490)
T PRK10938 263 LNNGVVSYNDRPILHNLSWQVNPGE---HWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIG 339 (490)
T ss_pred EeceEEEECCeeEEeeceEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhce
Confidence 4678889988889999999999999 999999999999999999999874 5999999997531 24589
Q ss_pred cccCCCCCCcc--chHHHHHHhhhcc---c--ccccc--ccccccccccCcc-------cccc---ccchhhhhHhHHhh
Q 012357 110 GNFDDPRLTDY--DTLLENIRGLKEG---K--AVQVP--IYDFKSSSRIGYR-------TLEV---PSSRIVIIEGIYAL 170 (465)
Q Consensus 110 ~vfQ~p~l~~~--~tv~enL~~l~~~---~--~~~~p--~~d~~~~~~~~~~-------~~~l---~~qRVlIaegl~aL 170 (465)
|++|++.++.. .++.+++...... . ..... ..-....+..+.. ...+ ..|||.|++++
T Consensus 340 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al--- 416 (490)
T PRK10938 340 YVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRAL--- 416 (490)
T ss_pred EECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHH---
Confidence 99998765432 4566555432110 0 00000 0000001111111 1112 24999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHH---HHHHHHHcCC-CH------HHHHHH-HhceEEEccCcEEEec
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQ-EP------EEIIHQ-ISETVYPMYKAFIEPD 229 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~-TI------~~vi~~-i~d~V~~m~~G~I~~~ 229 (465)
..+|.++++||||+++|+...+. ++++++++|. |+ .+.+.+ +||++++|++|+++..
T Consensus 417 --~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 417 --VKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred --hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 88999999999999999987554 4566666654 45 566666 6999999999987653
No 330
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.83 E-value=3.7e-20 Score=201.18 Aligned_cols=181 Identities=14% Similarity=0.177 Sum_probs=131.5
Q ss_pred eeeeEeeeCc-----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cc
Q 012357 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (465)
Q Consensus 40 ~~~ls~~~g~-----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~ 106 (465)
.++++|.|+. ..+|+++||++++|+ +++|+||||||||||++.|+|+. |++|.|.+||.++. ++
T Consensus 340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~---~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGD---IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred EEEEEEEeCCCCCCcCceeccceEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 5789999964 259999999999999 99999999999999999999999 99999999999764 35
Q ss_pred ccccccCCCCCCccchHHHHHHhhhcccccccccccccccc-----ccCcc---ccc-cccchhhhhHhHHhhhhccCcc
Q 012357 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS-----RIGYR---TLE-VPSSRIVIIEGIYALSEKLRPL 177 (465)
Q Consensus 107 ~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~-----~~~~~---~~~-l~~qRVlIaegl~aL~d~~~p~ 177 (465)
.+++++|++.+|+ .++.+|............-.......+ ..+.. ..+ ...||+.|+|++ ..+|.
T Consensus 417 ~i~~v~q~~~lf~-~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRal-----l~~~~ 490 (555)
T TIGR01194 417 LFSAIFADFHLFD-DLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAW-----LEDRP 490 (555)
T ss_pred hCcEEccChhhhh-hhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHH-----HcCCC
Confidence 6899999998775 466666411000000000000000000 00100 111 234999999999 88999
Q ss_pred eeeeeeeecCccHHHHHHHHHHH----HHcCCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 178 IDLRVSVTGGVHFDLVKRVFRDI----QRVGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 178 LdllDEpts~LD~~l~rrIlrdl----~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
++++||||+++|+...+++.+.+ ...|+|+ .+.+ +.||+++++++|++.+..
T Consensus 491 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 491 ILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF-ELADQIIKLAAGCIVKDT 552 (555)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEEEEEECCEEEEec
Confidence 99999999999999877765433 3458887 4444 579999999999997654
No 331
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=2.7e-20 Score=182.66 Aligned_cols=159 Identities=13% Similarity=0.176 Sum_probs=115.9
Q ss_pred EEeeeeeEEe-----cCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCCccchHHH
Q 012357 52 VIRACQLLAQ-----KNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLE 125 (465)
Q Consensus 52 aL~~VsL~i~-----~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~e 125 (465)
.+.+++|.+. +|+ ++||+||||||||||+++|+|++ |++|.|.++|. .++|++|++..+...|+.+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge---~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----~i~~~~q~~~~~~~~tv~e 80 (246)
T cd03237 9 TLGEFTLEVEGGSISESE---VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----TVSYKPQYIKADYEGTVRD 80 (246)
T ss_pred ccCcEEEEEecCCcCCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----eEEEecccccCCCCCCHHH
Confidence 4555555554 799 99999999999999999999999 99999999985 5899999988777789999
Q ss_pred HHHhhhccccccccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHH-
Q 012357 126 NIRGLKEGKAVQVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR- 195 (465)
Q Consensus 126 nL~~l~~~~~~~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rr- 195 (465)
++......... .+.......+..+. ....+ ..||+.|++++ ..+|.+.++||||++||+.....
T Consensus 81 ~l~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL-----~~~p~llllDEPt~~LD~~~~~~l 154 (246)
T cd03237 81 LLSSITKDFYT-HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACL-----SKDADIYLLDEPSAYLDVEQRLMA 154 (246)
T ss_pred HHHHHhhhccc-cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCcccCCHHHHHHH
Confidence 98754221100 00000000111111 11112 24999999999 89999999999999999987554
Q ss_pred --HHHHHHHc-CCCH------HHHHHHHhceEEEccCc
Q 012357 196 --VFRDIQRV-GQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 196 --Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G 224 (465)
+++++.++ |.|+ .+.+..+||++++|+.+
T Consensus 155 ~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~ 192 (246)
T cd03237 155 SKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGE 192 (246)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCC
Confidence 45666543 7887 67888999999999653
No 332
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.83 E-value=1.2e-20 Score=192.41 Aligned_cols=160 Identities=21% Similarity=0.218 Sum_probs=120.8
Q ss_pred EEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccCCCCCCccchHHHHHHhhhcccccccccc---
Q 012357 71 VAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY--- 141 (465)
Q Consensus 71 IiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~--- 141 (465)
|+||||||||||+++|+|+. |++|.|.++|.++. ++.++|+||++.+++.+|+.+|+.+............
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 58999999999999999999 99999999998753 3569999999999999999999987532111100000
Q ss_pred ccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHc-CCCH-
Q 012357 142 DFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP- 207 (465)
Q Consensus 142 d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~-G~TI- 207 (465)
-....+..+. ....+ ..|||.|++++ ..+|.++++|||+++||+.....+ ++++.++ |.|+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL-----~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii 155 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARAL-----VFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHH-----HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 0000111111 11112 24999999999 899999999999999999875544 4555544 8887
Q ss_pred -----HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 208 -----EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 208 -----~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
.+.+..+||++++|++|++...++..++
T Consensus 156 ivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~ 188 (325)
T TIGR01187 156 FVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI 188 (325)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 6778899999999999999998888776
No 333
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=8.2e-21 Score=173.63 Aligned_cols=172 Identities=15% Similarity=0.197 Sum_probs=124.4
Q ss_pred eeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccccccCCCCC
Q 012357 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRL 117 (465)
Q Consensus 46 ~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~vfQ~p~l 117 (465)
.-++..+|+++||.+.+|+ .++|.||||||||||+|+++.+. |++|++.+.|.+++ |++++|+.|.|.+
T Consensus 12 ~a~~a~il~~isl~v~~Ge---~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 12 LAGDAKILNNISLSVRAGE---FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred hcCCCeeecceeeeecCCc---eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccc
Confidence 3456789999999999999 99999999999999999999999 99999999999865 5789999999998
Q ss_pred CccchHHHHHHhhhccc-cccccccccccccccCc-------cc--c-ccccchhhhhHhHHhhhhccCcceeeeeeeec
Q 012357 118 TDYDTLLENIRGLKEGK-AVQVPIYDFKSSSRIGY-------RT--L-EVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~~-~~~~p~~d~~~~~~~~~-------~~--~-~l~~qRVlIaegl~aL~d~~~p~LdllDEpts 186 (465)
|. .||++|+.++-.-. ....+........+.+. .. + ..+.||+.+++-+ ...|.++++||+|+
T Consensus 89 fg-~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~L-----q~~P~ILLLDE~Ts 162 (223)
T COG4619 89 FG-DTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNL-----QFMPKILLLDEITS 162 (223)
T ss_pred cc-cchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHh-----hcCCceEEecCchh
Confidence 85 79999998853111 00001000000011100 01 1 1234999999999 89999999999999
Q ss_pred CccHHHHH---HHHHHHH-HcCCCH------HHHHHHHhceEEEccCcEE
Q 012357 187 GVHFDLVK---RVFRDIQ-RVGQEP------EEIIHQISETVYPMYKAFI 226 (465)
Q Consensus 187 ~LD~~l~r---rIlrdl~-e~G~TI------~~vi~~i~d~V~~m~~G~I 226 (465)
+||+...+ .++..+. ++...+ .+..-+.+|+++-+..|++
T Consensus 163 ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 99998644 3443333 445554 4444566777777766654
No 334
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.82 E-value=5.4e-20 Score=202.33 Aligned_cols=181 Identities=14% Similarity=0.112 Sum_probs=140.0
Q ss_pred CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CC---eeEEEECCeecC----ccccccccCCCCCCc
Q 012357 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS----SRIIDGNFDDPRLTD 119 (465)
Q Consensus 48 g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~---sG~I~lDg~~~~----~~~ig~vfQ~p~l~~ 119 (465)
+.+.+|+++|+.+++|+ +++|+||||||||||+++|+|.. |+ +|+|.+||.+.. ++.++|++|++.+++
T Consensus 36 ~~~~iL~~vs~~i~~Ge---~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~ 112 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGE---LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIP 112 (617)
T ss_pred CccccccCCEEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCc
Confidence 45779999999999999 99999999999999999999998 64 799999999764 456899999999999
Q ss_pred cchHHHHHHhhhccc---ccc---cc--------cccc--ccccccCcc----ccc-cccchhhhhHhHHhhhhccCcce
Q 012357 120 YDTLLENIRGLKEGK---AVQ---VP--------IYDF--KSSSRIGYR----TLE-VPSSRIVIIEGIYALSEKLRPLI 178 (465)
Q Consensus 120 ~~tv~enL~~l~~~~---~~~---~p--------~~d~--~~~~~~~~~----~~~-l~~qRVlIaegl~aL~d~~~p~L 178 (465)
..|++||+.+...-. ... .. .... ......+.. ..+ ...||+.|++++ ..+|.+
T Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL-----~~~p~v 187 (617)
T TIGR00955 113 TLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL-----LTDPPL 187 (617)
T ss_pred cCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHH-----HcCCCE
Confidence 999999998753211 000 00 0000 011222210 111 234999999999 889999
Q ss_pred eeeeeeecCccHHHHHHH---HHHHHHcCCCH-------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 179 DLRVSVTGGVHFDLVKRV---FRDIQRVGQEP-------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 179 dllDEpts~LD~~l~rrI---lrdl~e~G~TI-------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+++||||+|||......+ ++++.++|+|+ ...+.+++|++.+|.+|+++..|+..++.
T Consensus 188 lllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 188 LFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 999999999999975554 46666678887 24677899999999999999999988864
No 335
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.82 E-value=2e-20 Score=184.65 Aligned_cols=179 Identities=11% Similarity=0.112 Sum_probs=126.8
Q ss_pred eeeeeEeeeCcE-EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEE-----------ECCeecCc
Q 012357 39 IEDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-----------MDNYNDSS 105 (465)
Q Consensus 39 v~~~ls~~~g~~-~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~-----------lDg~~~~~ 105 (465)
+.+++++.|+.. .++++++ .+.+|+ +++|+||||||||||+++|+|++ |++|.|. ++|.+...
T Consensus 2 ~~~~~~~~y~~~~~~l~~i~-~i~~Ge---~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~ 77 (255)
T cd03236 2 LEDEPVHRYGPNSFKLHRLP-VPREGQ---VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77 (255)
T ss_pred cccCcceeecCcchhhhcCC-CCCCCC---EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhh
Confidence 346788888764 5999999 499999 99999999999999999999999 9999995 77876431
Q ss_pred ---------cccccccCCCCCCccchHHHHHHhhhccccccccccccccccccCc------ccccc---ccchhhhhHhH
Q 012357 106 ---------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 106 ---------~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl 167 (465)
..+++++|++..++ .++.+++............. ....+..+. ....+ ..||+.|++++
T Consensus 78 ~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~--~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 154 (255)
T cd03236 78 YFTKLLEGDVKVIVKPQYVDLIP-KAVKGKVGELLKKKDERGKL--DELVDQLELRHVLDRNIDQLSGGELQRVAIAAAL 154 (255)
T ss_pred hhHHhhhcccceeeecchhccCc-hHHHHHHHHHhchhHHHHHH--HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 13577888887776 36666665432111000000 000011110 11112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
..+|.+.++||||+++|+.... .+++++.++|.|+ .+.+.++||+++.++ |.+...|
T Consensus 155 -----~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 155 -----ARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred -----HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 8899999999999999998644 5567776678887 778888999999995 4454433
No 336
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.1e-19 Score=165.62 Aligned_cols=137 Identities=20% Similarity=0.321 Sum_probs=112.4
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc-------ccccccc
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~-------~~ig~vf 112 (465)
+++++.|....+++++++++++|+ +++|+|+||||||||+++|+|++ |..|.|.++|.+... +.++|+|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~i~~g~---~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 3 ENLSFRYGGRTALDNVSLTLKAGE---IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred EEEEEEeCCeeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 567888877789999999999999 99999999999999999999999 899999999976532 3355665
Q ss_pred CCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHH
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l 192 (465)
| .++ ...+|+.|++++ ...|.+.++|||++++|+..
T Consensus 80 q----------------------------------lS~-----G~~~r~~l~~~l-----~~~~~i~ilDEp~~~lD~~~ 115 (157)
T cd00267 80 Q----------------------------------LSG-----GQRQRVALARAL-----LLNPDLLLLDEPTSGLDPAS 115 (157)
T ss_pred e----------------------------------CCH-----HHHHHHHHHHHH-----hcCCCEEEEeCCCcCCCHHH
Confidence 5 111 124799999999 88999999999999999987
Q ss_pred HHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCc
Q 012357 193 VKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 193 ~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G 224 (465)
..++. +++.+.|.|+ .+.+..+||+++.+.+|
T Consensus 116 ~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g 156 (157)
T cd00267 116 RERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDG 156 (157)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCc
Confidence 55544 4544456677 77888899999998876
No 337
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=1.9e-20 Score=174.94 Aligned_cols=187 Identities=16% Similarity=0.163 Sum_probs=141.6
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECC-eecC--------ccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN-YNDS--------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg-~~~~--------~~~ig 109 (465)
.++++.+||++.||+++||++.+|+ +-+|+|||||||||++..|+|.. |+.|.+.++| .++. +..||
T Consensus 8 ~~~vsVsF~GF~Aln~ls~~v~~Ge---lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIG 84 (249)
T COG4674 8 LDGVSVSFGGFKALNDLSFSVDPGE---LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIG 84 (249)
T ss_pred EeceEEEEcceeeeeeeEEEecCCe---EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccC
Confidence 4678999999999999999999999 99999999999999999999999 9999999999 5543 34578
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccccccccc----c-------ccccCc--cc------c-ccccchhhhhHhHHh
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFK----S-------SSRIGY--RT------L-EVPSSRIVIIEGIYA 169 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~----~-------~~~~~~--~~------~-~l~~qRVlIaegl~a 169 (465)
--||.|..|...|+++|+.......+.-++..-.. . ....+. +. + ....|.+-|..-+
T Consensus 85 RKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll-- 162 (249)
T COG4674 85 RKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL-- 162 (249)
T ss_pred ccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee--
Confidence 89999999999999999987543322111110000 0 000010 00 0 0122555554444
Q ss_pred hhhccCcceeeeeeeecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 170 LSEKLRPLIDLRVSVTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 170 L~d~~~p~LdllDEpts~LD~~l---~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
.-+|.++++|||++|+--.. .-++++.++. +.++ |+.+.+++++|-+|++|.+..+|+.+++
T Consensus 163 ---~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v 233 (249)
T COG4674 163 ---AQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233 (249)
T ss_pred ---ccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHh
Confidence 77899999999999987654 4467777765 3455 9999999999999999999999998887
No 338
>PRK13409 putative ATPase RIL; Provisional
Probab=99.82 E-value=6.8e-20 Score=200.30 Aligned_cols=173 Identities=14% Similarity=0.138 Sum_probs=129.8
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~ 118 (465)
.+++++.|+.. .|+++|+++.+|+ ++||+||||||||||+++|+|++ |++|.|.++ ..++|++|++.++
T Consensus 343 ~~~ls~~~~~~-~l~~~s~~i~~Ge---iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------~~i~y~~Q~~~~~ 412 (590)
T PRK13409 343 YPDLTKKLGDF-SLEVEGGEIYEGE---VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------LKISYKPQYIKPD 412 (590)
T ss_pred EcceEEEECCE-EEEecceEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------eeEEEecccccCC
Confidence 46678888765 4999999999999 99999999999999999999999 999999986 2589999998888
Q ss_pred ccchHHHHHHhhhccccccccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCcc
Q 012357 119 DYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (465)
Q Consensus 119 ~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD 189 (465)
...|+.+++......... ........+..+. ....+ ..|||.||+++ ...|.++++||||++||
T Consensus 413 ~~~tv~e~l~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL-----~~~p~llLLDEPt~~LD 485 (590)
T PRK13409 413 YDGTVEDLLRSITDDLGS--SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACL-----SRDADLYLLDEPSAHLD 485 (590)
T ss_pred CCCcHHHHHHHHhhhcCh--HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHH-----hcCCCEEEEeCCccCCC
Confidence 888999999864221110 0000001111111 11112 24999999999 89999999999999999
Q ss_pred HHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 190 FDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 190 ~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
+.... ++++++.++ |.|+ .+.+..+||+++++++ .+...|
T Consensus 486 ~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g 535 (590)
T PRK13409 486 VEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHG 535 (590)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeee
Confidence 98654 455666554 8887 6788899999999965 443333
No 339
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.82 E-value=2.9e-21 Score=182.51 Aligned_cols=170 Identities=36% Similarity=0.676 Sum_probs=141.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC--------CeeEEEECCeecCc--------cccccccCCCCCCccchHHHHHHhhh
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMP--------SIAVITMDNYNDSS--------RIIDGNFDDPRLTDYDTLLENIRGLK 131 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP--------~sG~I~lDg~~~~~--------~~ig~vfQ~p~l~~~~tv~enL~~l~ 131 (465)
||||.|+||||||||++.|...+. ..+.+.+|+++... ..-.+.|++|..+++..+.+.|..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 699999999999999999998873 14577788876421 11245788899999999999999999
Q ss_pred ccccccccccccccccccCccccccccchhhhhHhHHhhhh-ccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHH
Q 012357 132 EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (465)
Q Consensus 132 ~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d-~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~v 210 (465)
.+..+..|.|++....+.+ ......+.+|+|+||+|++++ .+++.+|+.++.+++.|.++.|++.|++.++|++..++
T Consensus 81 ~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~ 159 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV 159 (194)
T ss_dssp TTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred CCCccccccccccccccee-eeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence 9989999999998877665 333456789999999999984 78999999999999999999999999999999999999
Q ss_pred HHHHhceEEEccCcEEEecCCcceEEeeC
Q 012357 211 IHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (465)
Q Consensus 211 i~~i~d~V~~m~~G~I~~~g~~aDIiI~~ 239 (465)
+++|. ++.+++..+|.|+...||++|++
T Consensus 160 ~~~~~-~~~~~~~~~I~p~~~~ADivi~~ 187 (194)
T PF00485_consen 160 IAQYE-RVRPGYERYIEPQKERADIVIPS 187 (194)
T ss_dssp HHHHH-THHHHHHHCTGGGGGG-SEEEES
T ss_pred EEEee-cCChhhhhheeccccccEEEECC
Confidence 99998 99999999999999999999964
No 340
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.82 E-value=3e-20 Score=182.82 Aligned_cols=181 Identities=22% Similarity=0.340 Sum_probs=150.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC----CeeEEEECCeecCcc-----------ccccccCC--CCCCccchHHHHHHhh
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSR-----------IIDGNFDD--PRLTDYDTLLENIRGL 130 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP----~sG~I~lDg~~~~~~-----------~ig~vfQ~--p~l~~~~tv~enL~~l 130 (465)
+|||+|+|||||||+++.+...+. ....|..|+|+...+ .-+..|+| |+++++..+.+.+..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999999987762 367899999976311 14578999 9999999999999999
Q ss_pred hcccccccccccccc----------ccccCccccccccchhhhhHhHHhhh----hccCcceeeeeeeecCccHHHHHHH
Q 012357 131 KEGKAVQVPIYDFKS----------SSRIGYRTLEVPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVKRV 196 (465)
Q Consensus 131 ~~~~~~~~p~~d~~~----------~~~~~~~~~~l~~qRVlIaegl~aL~----d~~~p~LdllDEpts~LD~~l~rrI 196 (465)
.++..+..|.|++.. +.+..++ ....+..|+|+||++.+. ..++..+|+++++++..|.+++||+
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~-~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI 159 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE-DLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKI 159 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCcc-cccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHH
Confidence 999999999997632 2222211 124678999999998543 3789999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhceEEEccCcEEEecCCcceEEee-----CCCCCCCccCCc
Q 012357 197 FRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII-----NKFNPFTGFQNP 250 (465)
Q Consensus 197 lrdl~e~G~TI~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~-----~~~~p~~~~~~p 250 (465)
.||.++||++.+.++.+|..++ +.+..+|.|+...+||+++ ...|||.....|
T Consensus 160 ~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr~p~vdts~pf~~~~~p 217 (277)
T cd02029 160 HRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQRVPTVDTSNPFIARDIP 217 (277)
T ss_pred HhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEeccCcccCCCcccccCCC
Confidence 9999999999999999999999 9999999999999999873 456676655554
No 341
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.7e-19 Score=199.08 Aligned_cols=181 Identities=12% Similarity=0.137 Sum_probs=126.4
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~ 118 (465)
.+++++.||.+.++++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.. .++|++|++..+
T Consensus 4 i~nls~~~g~~~~l~~vs~~i~~Ge---~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~----~i~~~~q~~~~~ 76 (638)
T PRK10636 4 FSSLQIRRGVRVLLDNATATINPGQ---KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW----QLAWVNQETPAL 76 (638)
T ss_pred EEEEEEEeCCceeecCcEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC----EEEEEecCCCCC
Confidence 4789999999999999999999999 99999999999999999999998 999999998742 356666543222
Q ss_pred ccchHHHHHHh-----------------------hh--ccccccccccc-----cccccccCcc-------cccc---cc
Q 012357 119 DYDTLLENIRG-----------------------LK--EGKAVQVPIYD-----FKSSSRIGYR-------TLEV---PS 158 (465)
Q Consensus 119 ~~~tv~enL~~-----------------------l~--~~~~~~~p~~d-----~~~~~~~~~~-------~~~l---~~ 158 (465)
. .++.+.+.. +. .+.......++ ......++.. ...+ ..
T Consensus 77 ~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGer 155 (638)
T PRK10636 77 P-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWR 155 (638)
T ss_pred C-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHH
Confidence 1 222221110 00 00000000000 0001111110 1111 23
Q ss_pred chhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEe-cCC
Q 012357 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEP-DLQ 231 (465)
Q Consensus 159 qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~-~g~ 231 (465)
+||.||+++ ...|.++++||||++||+..+.++..-+.+.+.|+ ...+..+||+++.+++|++.. .|+
T Consensus 156 qRv~LA~aL-----~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~ 230 (638)
T PRK10636 156 MRLNLAQAL-----ICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGN 230 (638)
T ss_pred HHHHHHHHH-----ccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCC
Confidence 999999999 89999999999999999998888777776666676 788899999999999999863 444
Q ss_pred cc
Q 012357 232 TA 233 (465)
Q Consensus 232 ~a 233 (465)
..
T Consensus 231 ~~ 232 (638)
T PRK10636 231 YS 232 (638)
T ss_pred HH
Confidence 33
No 342
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=5.4e-20 Score=177.45 Aligned_cols=177 Identities=16% Similarity=0.141 Sum_probs=130.2
Q ss_pred eCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCCccchHHH
Q 012357 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLE 125 (465)
Q Consensus 47 ~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~e 125 (465)
+..++||+||||++.+|+ .+||+|+||||||||+|.|+|.+ |++|.|.++|.-.+--.++.-|| +..|.++
T Consensus 37 ~~~~~aL~disf~i~~Ge---~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~-----pelTGre 108 (249)
T COG1134 37 VAEFWALKDISFEIYKGE---RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFD-----PELTGRE 108 (249)
T ss_pred cceEEEecCceEEEeCCC---EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCC-----cccchHH
Confidence 456889999999999999 99999999999999999999999 99999999997543222333333 3578899
Q ss_pred HHHhhh--ccc---ccc---cccccccc-ccccCccccccc---cchhhhhHhHHhhhhccCcceeeeeeeecCccHHHH
Q 012357 126 NIRGLK--EGK---AVQ---VPIYDFKS-SSRIGYRTLEVP---SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLV 193 (465)
Q Consensus 126 nL~~l~--~~~---~~~---~p~~d~~~-~~~~~~~~~~l~---~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~ 193 (465)
|+.+.. .|. .+. ....+|.. ++........++ ..|++.+-+. ..+|.++++||+.+--|....
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~-----~~~pdILllDEvlavGD~~F~ 183 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVAT-----HVEPDILLLDEVLAVGDAAFQ 183 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhh-----hcCCCEEEEehhhhcCCHHHH
Confidence 987632 111 110 01112221 111111111222 2678877777 889999999999999999987
Q ss_pred HHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 194 KRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 194 rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
++-. +++.+++.|+ ++.+.+|||+++.+++|++...|+..+++
T Consensus 184 ~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 184 EKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHH
Confidence 7655 4444567777 89999999999999999999999988875
No 343
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.5e-19 Score=172.70 Aligned_cols=186 Identities=16% Similarity=0.190 Sum_probs=135.8
Q ss_pred eeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC---CCeeEEEECCeecC--------cccc
Q 012357 41 DTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDS--------SRII 108 (465)
Q Consensus 41 ~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---P~sG~I~lDg~~~~--------~~~i 108 (465)
++++.+..+ +.+|++|||++++|+ +.+|.||||||||||++.|+|.- ++.|.|.+||.++. +.-+
T Consensus 7 ~dLhv~v~~~keILkgvnL~v~~GE---vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~Gi 83 (251)
T COG0396 7 KDLHVEVEGKKEILKGVNLTVKEGE---VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGI 83 (251)
T ss_pred eeeEEEecCchhhhcCcceeEcCCc---EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCC
Confidence 567777776 499999999999999 99999999999999999999996 68999999999875 2346
Q ss_pred ccccCCCCCCccchHHHHHHhhhcc---cccccccccccc---ccccCc----------cccc-cccchhhhhHhHHhhh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEG---KAVQVPIYDFKS---SSRIGY----------RTLE-VPSSRIVIIEGIYALS 171 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~---~~~~~p~~d~~~---~~~~~~----------~~~~-l~~qRVlIaegl~aL~ 171 (465)
..-||.|.-++..++.+.+....+. .....+.+.... .+.++. .-.+ ....|.=|+..+
T Consensus 84 fLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~---- 159 (251)
T COG0396 84 FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLL---- 159 (251)
T ss_pred EEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHH----
Confidence 7799999999988888877754321 100011111000 001110 0011 123788888888
Q ss_pred hccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHh-ceEEEccCcEEEecCCcceE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQIS-ETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~-d~V~~m~~G~I~~~g~~aDI 235 (465)
.++|.+.++|||+||+|+..++- .++.+++.|.++ ..++.++. |+|.+|.+|+|+.+|.. ++
T Consensus 160 -~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 160 -LLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred -hcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 89999999999999999986554 456666677666 34444432 99999999999999986 44
No 344
>PLN03073 ABC transporter F family; Provisional
Probab=99.81 E-value=1.6e-19 Score=201.18 Aligned_cols=177 Identities=13% Similarity=0.078 Sum_probs=127.8
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCC
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l 117 (465)
.+++++.|+ ...+++++||++.+|+ ++||+||||||||||+++|+|++ |++|.|.+++ +..++|++|++.
T Consensus 511 ~~~ls~~y~~~~~il~~vsl~i~~Ge---~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~----~~~igyv~Q~~~- 582 (718)
T PLN03073 511 FSDASFGYPGGPLLFKNLNFGIDLDS---RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA----KVRMAVFSQHHV- 582 (718)
T ss_pred EEeeEEEeCCCCeeEeccEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC----ceeEEEEecccc-
Confidence 478899995 4679999999999999 99999999999999999999999 9999999875 346899999862
Q ss_pred CccchHHHHHHh-h-hccccccccccccccccccCc-------ccccc---ccchhhhhHhHHhhhhccCcceeeeeeee
Q 012357 118 TDYDTLLENIRG-L-KEGKAVQVPIYDFKSSSRIGY-------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (465)
Q Consensus 118 ~~~~tv~enL~~-l-~~~~~~~~p~~d~~~~~~~~~-------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpt 185 (465)
+..++.++... + ........... .......+. ....+ ..||+.|++++ ...|.++++||||
T Consensus 583 -~~l~~~~~~~~~~~~~~~~~~~~~i-~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL-----~~~p~lLLLDEPT 655 (718)
T PLN03073 583 -DGLDLSSNPLLYMMRCFPGVPEQKL-RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT-----FKKPHILLLDEPS 655 (718)
T ss_pred -ccCCcchhHHHHHHHhcCCCCHHHH-HHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHH-----hcCCCEEEEcCCC
Confidence 22333333221 1 10000000000 000011111 01112 24999999999 8899999999999
Q ss_pred cCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEE-ecCC
Q 012357 186 GGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIE-PDLQ 231 (465)
Q Consensus 186 s~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~-~~g~ 231 (465)
++||+.....+++.+.+.+.|+ ...+..+||+++++.+|.+. ..|.
T Consensus 656 ~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~ 708 (718)
T PLN03073 656 NHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGT 708 (718)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCC
Confidence 9999999888888777643466 77889999999999999986 3443
No 345
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.80 E-value=2.5e-19 Score=212.04 Aligned_cols=187 Identities=16% Similarity=0.112 Sum_probs=139.6
Q ss_pred eeeeEeeeC----cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCC----CeeEEEECCeecC---cccc
Q 012357 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS---SRII 108 (465)
Q Consensus 40 ~~~ls~~~g----~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP----~sG~I~lDg~~~~---~~~i 108 (465)
.+++++.++ .+.+|++||+.+++|+ ++||+||||||||||+++|+|+.+ ++|.|.+||.+.. ++.+
T Consensus 762 ~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge---~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 762 WRNLTYEVKIKKEKRVILNNVDGWVKPGT---LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred EEeeEEEecCCCCCcEeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 466777763 4689999999999999 999999999999999999999983 6799999998763 4578
Q ss_pred ccccCCCCCCccchHHHHHHhhhcc---ccccccc--------cc-ccc----ccccCc--cccc-cccchhhhhHhHHh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEG---KAVQVPI--------YD-FKS----SSRIGY--RTLE-VPSSRIVIIEGIYA 169 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~---~~~~~p~--------~d-~~~----~~~~~~--~~~~-l~~qRVlIaegl~a 169 (465)
+|++|++.+++..|++|++.+.... ....... .+ ... ....+. ...+ ...||+.|++++
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL-- 916 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVEL-- 916 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHH--
Confidence 9999998889999999999874311 1110000 00 000 011110 0111 134999999999
Q ss_pred hhhccCcc-eeeeeeeecCccHHHHH---HHHHHHHHcCCCH-------HHHHHHHhceEEEccCc-EEEecCCcce
Q 012357 170 LSEKLRPL-IDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP-------EEIIHQISETVYPMYKA-FIEPDLQTAH 234 (465)
Q Consensus 170 L~d~~~p~-LdllDEpts~LD~~l~r---rIlrdl~e~G~TI-------~~vi~~i~d~V~~m~~G-~I~~~g~~aD 234 (465)
..+|. ++++||||++||..... +++++++++|+|+ ...+.+.+|++.++.+| +++..|+..+
T Consensus 917 ---~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 917 ---VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred ---HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 88996 99999999999998655 4556666678888 22345679999999997 9999988643
No 346
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.80 E-value=1.8e-19 Score=199.45 Aligned_cols=169 Identities=15% Similarity=0.140 Sum_probs=127.9
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCC
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l 117 (465)
.+++++.|+ +..+++++||++++|+ +++|+||||||||||+++|+|+. |++|.|.+++ ++.++|++|+|.+
T Consensus 454 ~~nv~~~~~~~~~il~~isl~i~~Ge---~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----~~~i~~v~Q~~~l 526 (659)
T TIGR00954 454 FENIPLVTPNGDVLIESLSFEVPSGN---HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----KGKLFYVPQRPYM 526 (659)
T ss_pred EEeeEEECCCCCeeeecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----CCcEEEECCCCCC
Confidence 678888884 5689999999999999 99999999999999999999999 8899999875 4579999999988
Q ss_pred CccchHHHHHHhhhcc-----ccc-cccc---cc-ccccc----ccCc-------cccc-cccchhhhhHhHHhhhhccC
Q 012357 118 TDYDTLLENIRGLKEG-----KAV-QVPI---YD-FKSSS----RIGY-------RTLE-VPSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~-----~~~-~~p~---~d-~~~~~----~~~~-------~~~~-l~~qRVlIaegl~aL~d~~~ 175 (465)
++. |+++|+.+.... ... .... .+ ....+ ..+. ...+ ...||+.||+++ ..+
T Consensus 527 ~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal-----~~~ 600 (659)
T TIGR00954 527 TLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLF-----YHK 600 (659)
T ss_pred CCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHH-----HcC
Confidence 876 999999864310 000 0000 00 00000 0000 1111 124999999999 889
Q ss_pred cceeeeeeeecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEcc
Q 012357 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMY 222 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~ 222 (465)
|.++++||||+++|+.....+.+.+.+.|.|+ .+.+ .+||++++++
T Consensus 601 p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-~~~d~il~l~ 652 (659)
T TIGR00954 601 PQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW-KYHEYLLYMD 652 (659)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH-HhCCEEEEEe
Confidence 99999999999999998888887777778887 4444 6799998885
No 347
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.80 E-value=4.8e-19 Score=195.45 Aligned_cols=183 Identities=11% Similarity=0.055 Sum_probs=124.0
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~ 118 (465)
.+++++.|+...++++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.. .+++++|++...
T Consensus 6 i~~ls~~~~~~~il~~is~~i~~Ge---~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~----~~~~l~q~~~~~ 78 (635)
T PRK11147 6 IHGAWLSFSDAPLLDNAELHIEDNE---RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL----IVARLQQDPPRN 78 (635)
T ss_pred EeeEEEEeCCceeEeCcEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC----EEEEeccCCCCC
Confidence 4678888888889999999999999 99999999999999999999999 999999998731 133444433211
Q ss_pred ccchHHHH------------------------------HHhhhc------c-ccccccccccccccccCc----ccccc-
Q 012357 119 DYDTLLEN------------------------------IRGLKE------G-KAVQVPIYDFKSSSRIGY----RTLEV- 156 (465)
Q Consensus 119 ~~~tv~en------------------------------L~~l~~------~-~~~~~p~~d~~~~~~~~~----~~~~l- 156 (465)
...++.++ +..+.. . ........-......++. ....+
T Consensus 79 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LS 158 (635)
T PRK11147 79 VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLS 158 (635)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcC
Confidence 11122221 111000 0 000000000000011111 01112
Q ss_pred --ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEe
Q 012357 157 --PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEP 228 (465)
Q Consensus 157 --~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~ 228 (465)
..|||.|++++ ...|.++++||||++||+.....+..-+.+.+.|+ ...+..+||+++.+++|++..
T Consensus 159 gGekqRv~LAraL-----~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~ 233 (635)
T PRK11147 159 GGWLRKAALGRAL-----VSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVS 233 (635)
T ss_pred HHHHHHHHHHHHH-----hcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 23999999999 88999999999999999998887777766655566 678899999999999999874
Q ss_pred -cCCcce
Q 012357 229 -DLQTAH 234 (465)
Q Consensus 229 -~g~~aD 234 (465)
.|++.+
T Consensus 234 ~~g~~~~ 240 (635)
T PRK11147 234 YPGNYDQ 240 (635)
T ss_pred ecCCHHH
Confidence 455443
No 348
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.6e-20 Score=187.46 Aligned_cols=190 Identities=19% Similarity=0.202 Sum_probs=148.3
Q ss_pred eeeeeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 37 VPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 37 ~~v~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
+-.-.+++|.|. .+++|+++||+++.|+ .++|+|+||+||||+++.|..++ +++|.|.+||+++. ++.
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~---tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~a 338 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGK---TVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCcc---EEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHH
Confidence 356688999995 6889999999999999 99999999999999999999999 99999999999875 577
Q ss_pred cccccCCCCCCccchHHHHHHhhhccccc----------c-------cc-ccccccccccCccccccccchhhhhHhHHh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAV----------Q-------VP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~~----------~-------~p-~~d~~~~~~~~~~~~~l~~qRVlIaegl~a 169 (465)
||++||+..+|+ .|...|+.+.+..... . .| -|+-..+++ +.+..-.++|||.|+|.+
T Consensus 339 Ig~VPQDtvLFN-Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vger-glklSggekqrvaiar~i-- 414 (497)
T COG5265 339 IGIVPQDTVLFN-DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGER-GLKLSGGEKQRVAIARTI-- 414 (497)
T ss_pred hCcCcccceehh-hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchh-eeeccCchHHHHHHHHHH--
Confidence 999999988774 6899999886532110 0 01 122111211 112222356999999999
Q ss_pred hhhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCHHHHHHH-----HhceEEEccCcEEEecCCcceEE
Q 012357 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEPEEIIHQ-----ISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 170 L~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI~~vi~~-----i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.-+|.++++||.|++||..+.+.+...+++ +|+|-.-++|+ =+|.++++++|+|++.|.+.+++
T Consensus 415 ---lk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll 485 (497)
T COG5265 415 ---LKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL 485 (497)
T ss_pred ---hcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHH
Confidence 789999999999999999998888866654 47765222222 26899999999999999998875
No 349
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=3.4e-19 Score=168.78 Aligned_cols=173 Identities=17% Similarity=0.157 Sum_probs=128.9
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc-------cccccccCCCC--CC
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPR--LT 118 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~-------~~ig~vfQ~p~--l~ 118 (465)
.+.+|+++||+|++|+ ++-|+|.||||||||++.|+|-+ |++|.|.+||.++++ ..++-+||+|. .+
T Consensus 18 ek~~l~~~sL~I~~g~---FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 18 EKRALNGLSLEIAEGD---FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred HHHHHhcCceeecCCc---eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 4679999999999999 99999999999999999999999 999999999998764 23667999984 68
Q ss_pred ccchHHHHHHhhhc-cccccc-c---------------ccccccccccCcccccc---ccchhhhhHhHHhhhhccCcce
Q 012357 119 DYDTLLENIRGLKE-GKAVQV-P---------------IYDFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLI 178 (465)
Q Consensus 119 ~~~tv~enL~~l~~-~~~~~~-p---------------~~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~L 178 (465)
+.+|++||+..... ++.... + ........++....-.+ ..|.+.++.|. ...|.+
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAt-----l~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMAT-----LHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHh-----cCCCcE
Confidence 89999999987542 221100 0 00111111111111111 22667777777 889999
Q ss_pred eeeeeeecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEEec
Q 012357 179 DLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPD 229 (465)
Q Consensus 179 dllDEpts~LD~~l~rrIl---rdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~ 229 (465)
+++||-|++|||+...-++ .++.+ .+.|. |+.+-.|.+|.++|++|+|+-+
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 9999999999999766555 44444 45555 7778889999999999999753
No 350
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.6e-19 Score=163.06 Aligned_cols=196 Identities=17% Similarity=0.206 Sum_probs=134.5
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------------
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------------- 104 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------------- 104 (465)
.+++..||.....++|||.+.+|| +.||+|.||||||||++||++-+ |++|.|.++...-.
T Consensus 10 ~~lsk~Yg~~~gc~~vsF~l~PGe---VLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L 86 (258)
T COG4107 10 SGLSKLYGPGKGCRDVSFDLYPGE---VLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRL 86 (258)
T ss_pred hhhhhhhCCCcCccccceeecCCc---EEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHH
Confidence 457778888889999999999999 99999999999999999999999 99999988664211
Q ss_pred -ccccccccCCCCC------CccchHHHHHHhhhcccccccc--cccccc-----ccccCccccccc---cchhhhhHhH
Q 012357 105 -SRIIDGNFDDPRL------TDYDTLLENIRGLKEGKAVQVP--IYDFKS-----SSRIGYRTLEVP---SSRIVIIEGI 167 (465)
Q Consensus 105 -~~~ig~vfQ~p~l------~~~~tv~enL~~l~~~~~~~~p--~~d~~~-----~~~~~~~~~~l~---~qRVlIaegl 167 (465)
+..-|++.|+|.- -...++.|-+...-..+.-.+. ..+|-. ..+........+ .||+-||+.+
T Consensus 87 ~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnL 166 (258)
T COG4107 87 LRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNL 166 (258)
T ss_pred hhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHh
Confidence 2235889898841 1112222332221111100000 000000 011111111121 3899999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEEe
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI 237 (465)
..+|.+.+.||||.|+|+....|++ |.+..+ |..+ ..++.-.+++..+|.+|.++++|-...+.
T Consensus 167 -----Vt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvL- 240 (258)
T COG4107 167 -----VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVL- 240 (258)
T ss_pred -----ccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccc-
Confidence 9999999999999999998766654 666544 6655 77889999999999999999999876653
Q ss_pred eCCCCCCC
Q 012357 238 INKFNPFT 245 (465)
Q Consensus 238 ~~~~~p~~ 245 (465)
....+||.
T Consensus 241 DDP~hPYT 248 (258)
T COG4107 241 DDPHHPYT 248 (258)
T ss_pred cCCCCchH
Confidence 44445543
No 351
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.78 E-value=3.7e-19 Score=166.63 Aligned_cols=169 Identities=46% Similarity=0.743 Sum_probs=142.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC----CCeeEEEECCeecCc---cccccccCCCCCCccchHHHHHHhhhccccccccc
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDSS---RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 140 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll----P~sG~I~lDg~~~~~---~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~ 140 (465)
++||.|++|||||||++.|...+ +....|++|+|+... +.....++++..++...+.++|..++.+..+..|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999986 357789999998642 22344677777788888999999888888889999
Q ss_pred cccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccH-HHHHHHHHHHHHcCCCHHHHHHHHhceEE
Q 012357 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF-DLVKRVFRDIQRVGQEPEEIIHQISETVY 219 (465)
Q Consensus 141 ~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~-~l~rrIlrdl~e~G~TI~~vi~~i~d~V~ 219 (465)
|++..+.+.+......++..|+|+||++++++.+++.+|++++.+++.+. ++.|++.||..++|++..+++.++ .+.
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~--~~~ 158 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMW--PSV 158 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhc--ccc
Confidence 99998877664455677889999999999999999999999999999998 999999999999999999999995 355
Q ss_pred EccCcEE-EecCCcceEEee
Q 012357 220 PMYKAFI-EPDLQTAHIKII 238 (465)
Q Consensus 220 ~m~~G~I-~~~g~~aDIiI~ 238 (465)
+++..++ .+.+..||++++
T Consensus 159 ~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 159 PSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred cCchhhcCCCchhccceecc
Confidence 6655554 668888998763
No 352
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.78 E-value=5.8e-19 Score=210.78 Aligned_cols=182 Identities=16% Similarity=0.139 Sum_probs=139.2
Q ss_pred eeeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCC
Q 012357 39 IEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP 115 (465)
Q Consensus 39 v~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p 115 (465)
-.++++|.|+. .++|+++||++++|+ +++|+||||||||||+++|+|++ |.+|.|.++| .++|++|+|
T Consensus 638 ~~~~~~~~~~~~~~~~l~~isl~i~~G~---~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------~i~yv~Q~~ 708 (1522)
T TIGR00957 638 TVHNATFTWARDLPPTLNGITFSIPEGA---LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------SVAYVPQQA 708 (1522)
T ss_pred EEEEeEEEcCCCCCceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------EEEEEcCCc
Confidence 35788998864 579999999999999 99999999999999999999999 8999999987 589999999
Q ss_pred CCCccchHHHHHHhhhcccccccc-c-------cccc-----cccccCcccccc---ccchhhhhHhHHhhhhccCccee
Q 012357 116 RLTDYDTLLENIRGLKEGKAVQVP-I-------YDFK-----SSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLID 179 (465)
Q Consensus 116 ~l~~~~tv~enL~~l~~~~~~~~p-~-------~d~~-----~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~Ld 179 (465)
.+++ .|+++||.+.......... . .+.. ....++.....+ ..||+.||||+ ..+|.+.
T Consensus 709 ~l~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl-----~~~~~il 782 (1522)
T TIGR00957 709 WIQN-DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV-----YSNADIY 782 (1522)
T ss_pred cccC-CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH-----hcCCCEE
Confidence 8774 7999999875321100000 0 0000 000111111122 34999999999 7899999
Q ss_pred eeeeeecCccHHHHHHHHHHHH-----HcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 180 LRVSVTGGVHFDLVKRVFRDIQ-----RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 180 llDEpts~LD~~l~rrIlrdl~-----e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
++|||++++|+...+.+.+.+. .+|+|+ .+.+.. ||++++|.+|++.+.|++.++.
T Consensus 783 lLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 783 LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHH
Confidence 9999999999998888776653 246776 455554 9999999999999999887764
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=99.78 E-value=1.1e-18 Score=206.69 Aligned_cols=178 Identities=16% Similarity=0.118 Sum_probs=133.8
Q ss_pred CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C--CeeEEEECCeecC----ccccccccCCCCCCcc
Q 012357 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (465)
Q Consensus 48 g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P--~sG~I~lDg~~~~----~~~ig~vfQ~p~l~~~ 120 (465)
+.+.+|+|||+.+++|+ +++|+||||||||||+++|+|.. + .+|.|.++|++.. ++.+||++|++.+++.
T Consensus 891 ~~~~iL~~vs~~i~~Ge---l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~ 967 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGV---LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQ 967 (1470)
T ss_pred CCceEeeCcEEEEECCe---EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCC
Confidence 44679999999999999 99999999999999999999998 3 5899999998653 3568999999999999
Q ss_pred chHHHHHHhhhcc---ccccccc--------cc-ccc----ccccCc---ccccc-ccchhhhhHhHHhhhhccCcceee
Q 012357 121 DTLLENIRGLKEG---KAVQVPI--------YD-FKS----SSRIGY---RTLEV-PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 121 ~tv~enL~~l~~~---~~~~~p~--------~d-~~~----~~~~~~---~~~~l-~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
.|++|++.+.... ....... .+ ... ....+. +.++. ..||+.|++++ ..+|.+++
T Consensus 968 lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL-----~~~P~lL~ 1042 (1470)
T PLN03140 968 VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVEL-----VANPSIIF 1042 (1470)
T ss_pred CcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHH-----hhCCCEEE
Confidence 9999999874311 1110000 00 000 111110 01111 24999999999 89999999
Q ss_pred eeeeecCccHHHHH---HHHHHHHHcCCCH------HH-HHHHHhceEEEccC-cEEEecCCcc
Q 012357 181 RVSVTGGVHFDLVK---RVFRDIQRVGQEP------EE-IIHQISETVYPMYK-AFIEPDLQTA 233 (465)
Q Consensus 181 lDEpts~LD~~l~r---rIlrdl~e~G~TI------~~-vi~~i~d~V~~m~~-G~I~~~g~~a 233 (465)
+||||++||..... ++++++.++|+|+ .+ .+.+++|++++|.+ |+++..|+..
T Consensus 1043 LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1043 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 99999999998655 4556777779888 22 46678999999996 8999888753
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=99.77 E-value=1e-18 Score=206.91 Aligned_cols=180 Identities=12% Similarity=0.099 Sum_probs=138.2
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CC---eeEEEECCeecC----ccccccccCCCCCCcc
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~---sG~I~lDg~~~~----~~~ig~vfQ~p~l~~~ 120 (465)
.+.+|+|||+.+++|+ +++|+||||||||||+++|+|.+ |+ +|.|.++|.+.. ++.++|++|++.+++.
T Consensus 177 ~~~IL~~vs~~i~~Ge---~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 177 KLTILKDASGIIKPSR---MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV 253 (1470)
T ss_pred cceeccCCeEEEeCCe---EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCc
Confidence 4679999999999999 99999999999999999999999 87 999999998653 4579999999999999
Q ss_pred chHHHHHHhhhccc--c--------ccc--------cccc-------------------cccccccCcc----------c
Q 012357 121 DTLLENIRGLKEGK--A--------VQV--------PIYD-------------------FKSSSRIGYR----------T 153 (465)
Q Consensus 121 ~tv~enL~~l~~~~--~--------~~~--------p~~d-------------------~~~~~~~~~~----------~ 153 (465)
+|++|++.+...-. . ... |..+ ....+..+.. .
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 99999998753210 0 000 0000 0000111111 0
Q ss_pred -ccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHH-cCCCH-------HHHHHHHhceE
Q 012357 154 -LEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQR-VGQEP-------EEIIHQISETV 218 (465)
Q Consensus 154 -~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e-~G~TI-------~~vi~~i~d~V 218 (465)
..+ ..|||.|++++ ..+|.++++||||+|||.....++ ++.+.+ .|.|+ ...+..++|+|
T Consensus 334 ~rglSGGerkRVsia~aL-----~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~v 408 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMI-----VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDI 408 (1470)
T ss_pred ccCCCcccceeeeehhhh-----cCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheE
Confidence 111 34999999999 889999999999999999976554 466654 47777 24677899999
Q ss_pred EEccCcEEEecCCcceEE
Q 012357 219 YPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 219 ~~m~~G~I~~~g~~aDIi 236 (465)
+++++|+++..|+..+++
T Consensus 409 ilL~~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 409 ILLSEGQIVYQGPRDHIL 426 (1470)
T ss_pred EEeeCceEEEeCCHHHHH
Confidence 999999999999988764
No 355
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.77 E-value=3.8e-19 Score=171.87 Aligned_cols=172 Identities=20% Similarity=0.308 Sum_probs=135.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecCcc---ccccc--cCCCCCCccchHHHHHHhhhc-ccc
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDSSR---IIDGN--FDDPRLTDYDTLLENIRGLKE-GKA 135 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~~~---~ig~v--fQ~p~l~~~~tv~enL~~l~~-~~~ 135 (465)
++||+|+||||||||++.|.+++ + ....|++|||+.... ..+.. +..|..++...+.+.+..+.. +..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 58999999999999999999998 3 245778899986532 23332 335677777778888888887 467
Q ss_pred ccccccccccccccCccccccccchhhhhHhHHhhhhc------cCcceeeeeeeecCccHH---HHHHHHHHHHHcCCC
Q 012357 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK------LRPLIDLRVSVTGGVHFD---LVKRVFRDIQRVGQE 206 (465)
Q Consensus 136 ~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~------~~p~LdllDEpts~LD~~---l~rrIlrdl~e~G~T 206 (465)
+..|.|++..+.+........++.+|+|+||+++|++. +++.+|++++++++.|.. +.+|.+++..++|++
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~ 160 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSD 160 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhC
Confidence 88999999988777644444677899999999999864 789999999999998885 456666776677776
Q ss_pred HHHHHHH----------------HhceEEEccCcEEEecCCcceEEeeC
Q 012357 207 PEEIIHQ----------------ISETVYPMYKAFIEPDLQTAHIKIIN 239 (465)
Q Consensus 207 I~~vi~~----------------i~d~V~~m~~G~I~~~g~~aDIiI~~ 239 (465)
...++++ |...+.++++.+|.|+...||++|+.
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~ 209 (220)
T cd02025 161 PDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEK 209 (220)
T ss_pred chhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEe
Confidence 6544443 55678999999999999999999964
No 356
>PLN02348 phosphoribulokinase
Probab=99.77 E-value=1.5e-18 Score=178.85 Aligned_cols=175 Identities=27% Similarity=0.495 Sum_probs=148.1
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcCC-------------------CeeEEEECCeecCc----cccccccCCCCC
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-------------------SIAVITMDNYNDSS----RIIDGNFDDPRL 117 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP-------------------~sG~I~lDg~~~~~----~~ig~vfQ~p~l 117 (465)
...++|++|||.|+||||||||++.|...+. ....|++|||+... +..+..+.+|..
T Consensus 44 ~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a 123 (395)
T PLN02348 44 AADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRA 123 (395)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCccc
Confidence 3345689999999999999999999998872 13479999998642 233556667888
Q ss_pred CccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhh-ccCcceeeeeeeecCccHHHHHHH
Q 012357 118 TDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRV 196 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d-~~~p~LdllDEpts~LD~~l~rrI 196 (465)
+++..+.+.|..++.+..+..|.|++..+.... ...+++.+|+|+||++++++ .+++.+|+.++++.+.|.+..|++
T Consensus 124 ~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~--~e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RRI 201 (395)
T PLN02348 124 NNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDP--PELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKI 201 (395)
T ss_pred ccHHHHHHHHHHHHCCCcEEeeccccCCCCcCC--cEEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHHH
Confidence 888888999999999999999999999876543 23466789999999999985 689999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhceEEEccCcEEEecCCcceEEee
Q 012357 197 FRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (465)
Q Consensus 197 lrdl~e~G~TI~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~ 238 (465)
.|++.++|.+..++.+++. .+.+.++.+|.|....||++|.
T Consensus 202 ~RD~~eRG~S~EeV~~~i~-ar~pd~~~yI~pqk~~ADiVI~ 242 (395)
T PLN02348 202 QRDMAERGHSLESIKASIE-ARKPDFDAYIDPQKQYADVVIE 242 (395)
T ss_pred HhhHhhcCCCHHHHHHHHH-hcCcchhhhcccccccCCEEEE
Confidence 9999999999999888875 5689999999999999999984
No 357
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.77 E-value=9e-19 Score=167.11 Aligned_cols=175 Identities=36% Similarity=0.644 Sum_probs=150.2
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcCC--CeeEEEECCeecC------ccccccccCCCCCCccchHHHHHHhhhc
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDS------SRIIDGNFDDPRLTDYDTLLENIRGLKE 132 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP--~sG~I~lDg~~~~------~~~ig~vfQ~p~l~~~~tv~enL~~l~~ 132 (465)
++|. ++||+|+||||||||++.|+++++ ..+.+++|++... ....++.||+|..++...+.+.|..+..
T Consensus 4 ~~g~---vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 80 (207)
T TIGR00235 4 PKGI---IIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKN 80 (207)
T ss_pred CCeE---EEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHC
Confidence 4566 999999999999999999999983 6789999998653 2346788999999999889999999988
Q ss_pred cccccccccccccccccCccccccccchhhhhHhHHhhh-hccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHHH
Q 012357 133 GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 211 (465)
Q Consensus 133 ~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~-d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~vi 211 (465)
+..+..|.|++....+.. +....++..++|+||.++++ ..+.+.+++..+.+++.+.+..|++.|+...+|.+....+
T Consensus 81 g~~v~~p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~ 159 (207)
T TIGR00235 81 GSPIDVPVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVI 159 (207)
T ss_pred CCCEecccceeecCCCCC-ceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHH
Confidence 888899999987665533 33445678999999999987 4577889999999999999999999999998999998889
Q ss_pred HHHhceEEEccCcEEEecCCcceEEeeC
Q 012357 212 HQISETVYPMYKAFIEPDLQTAHIKIIN 239 (465)
Q Consensus 212 ~~i~d~V~~m~~G~I~~~g~~aDIiI~~ 239 (465)
.+|...+.+++..++.+....||+++++
T Consensus 160 ~~~~~~~~~~~~~~i~~~~~~Ad~vi~~ 187 (207)
T TIGR00235 160 DQYRKTVRPMYEQFVEPTKQYADLIIPE 187 (207)
T ss_pred HHHHHhhhhhHHHhCcccccccEEEEcC
Confidence 9998888999999999999999999874
No 358
>PLN03130 ABC transporter C family member; Provisional
Probab=99.77 E-value=1.4e-18 Score=207.88 Aligned_cols=182 Identities=13% Similarity=0.127 Sum_probs=138.2
Q ss_pred eeeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCe-eEEEECCeecCccccccccC
Q 012357 39 IEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI-AVITMDNYNDSSRIIDGNFD 113 (465)
Q Consensus 39 v~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~s-G~I~lDg~~~~~~~ig~vfQ 113 (465)
..++++|.|+. .++|+|+||++++|+ .++|+||||||||||++.|.|.+ |.+ |.|.+ +..++|++|
T Consensus 616 ~~~nvsf~y~~~~~~~vL~~inl~i~~Ge---~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------~~~Iayv~Q 686 (1622)
T PLN03130 616 SIKNGYFSWDSKAERPTLSNINLDVPVGS---LVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------RGTVAYVPQ 686 (1622)
T ss_pred EEEeeEEEccCCCCCceeeceeEEecCCC---EEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------cCeEEEEcC
Confidence 45788999863 579999999999999 99999999999999999999999 888 89986 347999999
Q ss_pred CCCCCccchHHHHHHhhhcccccc-------------ccccccccccccCcccccc---ccchhhhhHhHHhhhhccCcc
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQ-------------VPIYDFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPL 177 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~-------------~p~~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~ 177 (465)
+|.+++ .|+++||.+.......+ ...........++..-..+ ..||+.||||+ ..+|.
T Consensus 687 ~p~Lfn-gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl-----y~~~~ 760 (1622)
T PLN03130 687 VSWIFN-ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV-----YSNSD 760 (1622)
T ss_pred ccccCC-CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH-----hCCCC
Confidence 999886 69999999864311000 0000001111122111122 34999999999 67899
Q ss_pred eeeeeeeecCccHHHHHHHHHHH-H--HcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 178 IDLRVSVTGGVHFDLVKRVFRDI-Q--RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 178 LdllDEpts~LD~~l~rrIlrdl-~--e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+.++|||++++|+...+.+...+ . .+|+|+ .+.+ ..||+|++|++|++.+.|.+.++.
T Consensus 761 IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l-~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 761 VYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFL-SQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred EEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHH-HhCCEEEEEeCCEEEEeCCHHHHH
Confidence 99999999999999877766443 2 147777 4444 458999999999999999988874
No 359
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.77 E-value=1e-18 Score=206.77 Aligned_cols=179 Identities=15% Similarity=0.093 Sum_probs=136.6
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-----CCeeEEEECCeecC------ccccccccCCCCC
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-----PSIAVITMDNYNDS------SRIIDGNFDDPRL 117 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-----P~sG~I~lDg~~~~------~~~ig~vfQ~p~l 117 (465)
.+.+|+|||+.+++|+ +++|+||||||||||+++|+|.. |.+|.|.++|.+.. ++.++|++|++.+
T Consensus 73 ~~~iL~~vs~~i~~Ge---~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~ 149 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGE---LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVH 149 (1394)
T ss_pred cceeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEecccccc
Confidence 4679999999999999 99999999999999999999985 57999999998652 3458999999999
Q ss_pred CccchHHHHHHhhhccc-------cccccccc----cccccccCcc-------------ccc-cccchhhhhHhHHhhhh
Q 012357 118 TDYDTLLENIRGLKEGK-------AVQVPIYD----FKSSSRIGYR-------------TLE-VPSSRIVIIEGIYALSE 172 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~~-------~~~~p~~d----~~~~~~~~~~-------------~~~-l~~qRVlIaegl~aL~d 172 (465)
++.+|+.|++.+..... ......+. ....+..+.. ..+ ...|||.|++++
T Consensus 150 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL----- 224 (1394)
T TIGR00956 150 FPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEAS----- 224 (1394)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHH-----
Confidence 99999999998743210 00000000 0001111110 011 134999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH-------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP-------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI-------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||++||...... +++++.++ |.|+ .+.+.+++|+++++++|+++..|+..++
T Consensus 225 ~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 225 LGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 88999999999999999987554 55666654 8887 2567789999999999999999988765
No 360
>PRK13409 putative ATPase RIL; Provisional
Probab=99.76 E-value=8.8e-19 Score=191.57 Aligned_cols=179 Identities=12% Similarity=0.168 Sum_probs=123.2
Q ss_pred eceeee----eeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEE-----------
Q 012357 35 EIVPIE----DTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT----------- 97 (465)
Q Consensus 35 ~~~~v~----~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~----------- 97 (465)
.+.+++ +.+++.||. ..+|++++ .+++|+ ++||+||||||||||+++|+|++ |+.|.|.
T Consensus 67 ~i~~~p~~~~~~~~~~yg~~~~~L~~l~-~i~~Ge---v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 142 (590)
T PRK13409 67 SIVNLPEELEEEPVHRYGVNGFKLYGLP-IPKEGK---VTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKR 142 (590)
T ss_pred EEeeCchhhccCceEEecCCceeEecCC-cCCCCC---EEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHH
Confidence 344544 447788986 46999999 899999 99999999999999999999999 9999997
Q ss_pred ECCeecC---------ccccccccCC----CCCCccchHHHHHHhhhccccccccccccccccccCcccccc---ccchh
Q 012357 98 MDNYNDS---------SRIIDGNFDD----PRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEV---PSSRI 161 (465)
Q Consensus 98 lDg~~~~---------~~~ig~vfQ~----p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l---~~qRV 161 (465)
++|.++. ...+++.+|. |.++. .++.+++...........-...+............+ ..||+
T Consensus 143 ~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv 221 (590)
T PRK13409 143 FRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRV 221 (590)
T ss_pred hCChHHHHHHHHHhccCcceeecccchhhhhhhhc-chHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 8887542 1224444554 43332 388888764211000000000000000001011112 34999
Q ss_pred hhhHhHHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCc
Q 012357 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 162 lIaegl~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G 224 (465)
.||.++ ..+|.++++||||++||+....+ +++++.+ |.|+ ++.+.++||++.+++++
T Consensus 222 ~ia~al-----~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAAL-----LRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHH-----hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999 89999999999999999986554 4566655 8887 78889999999999763
No 361
>PLN03232 ABC transporter C family member; Provisional
Probab=99.76 E-value=1.8e-18 Score=206.25 Aligned_cols=183 Identities=13% Similarity=0.111 Sum_probs=136.3
Q ss_pred eeeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCC
Q 012357 39 IEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDD 114 (465)
Q Consensus 39 v~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~ 114 (465)
-.++++|.|+. .++|+|+||++++|+ .++|+||||||||||++.|.|.+ |.+|.+. ..+..++|++|+
T Consensus 616 ~~~~vsF~y~~~~~~~vL~~inl~i~~Ge---~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----~~~~~Iayv~Q~ 687 (1495)
T PLN03232 616 SIKNGYFSWDSKTSKPTLSDINLEIPVGS---LVAIVGGTGEGKTSLISAMLGELSHAETSSV-----VIRGSVAYVPQV 687 (1495)
T ss_pred EEEeeEEEcCCCCCCceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----EecCcEEEEcCc
Confidence 35788999863 579999999999999 99999999999999999999999 8776542 124579999999
Q ss_pred CCCCccchHHHHHHhhhccccccc----------c---ccccccccccCcccccc---ccchhhhhHhHHhhhhccCcce
Q 012357 115 PRLTDYDTLLENIRGLKEGKAVQV----------P---IYDFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLI 178 (465)
Q Consensus 115 p~l~~~~tv~enL~~l~~~~~~~~----------p---~~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~L 178 (465)
|.+++ .|+++||.+.......+. + .........++..-..+ ..||+.||||+ .-+|.+
T Consensus 688 p~Lf~-gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl-----y~~~~I 761 (1495)
T PLN03232 688 SWIFN-ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV-----YSNSDI 761 (1495)
T ss_pred ccccc-ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH-----hcCCCE
Confidence 99986 699999997642110000 0 00000111112111122 34999999999 678999
Q ss_pred eeeeeeecCccHHHHHHHHHHH-HH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 179 DLRVSVTGGVHFDLVKRVFRDI-QR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 179 dllDEpts~LD~~l~rrIlrdl-~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.++|||++++|....+.+.+.+ .. +|+|+ .+.+ ..||+|++|.+|++.+.|++.++.
T Consensus 762 lLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l-~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 762 YIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFL-PLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred EEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhH-HhCCEEEEEeCCEEEEecCHHHHH
Confidence 9999999999999877776553 22 47777 4444 469999999999999999988874
No 362
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.76 E-value=6.6e-18 Score=157.99 Aligned_cols=147 Identities=13% Similarity=0.089 Sum_probs=102.3
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC--ccccccccCCCCCCccchHHHH
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--SRIIDGNFDDPRLTDYDTLLEN 126 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~--~~~ig~vfQ~p~l~~~~tv~en 126 (465)
.+.+++++||++++|+ +++|+||||||||||++++. +++|.+.+++.... ++.++|++| .+.
T Consensus 7 ~~~~l~~isl~i~~G~---~~~l~G~nG~GKSTLl~~il---~~~G~v~~~~~~~~~~~~~~~~~~q----------~~~ 70 (176)
T cd03238 7 NVHNLQNLDVSIPLNV---LVVVTGVSGSGKSTLVNEGL---YASGKARLISFLPKFSRNKLIFIDQ----------LQF 70 (176)
T ss_pred eeeeecceEEEEcCCC---EEEEECCCCCCHHHHHHHHh---hcCCcEEECCcccccccccEEEEhH----------HHH
Confidence 4679999999999999 99999999999999999884 47899998876311 223666665 222
Q ss_pred HHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccC--cceeeeeeeecCccHHHHHHH---HHHHH
Q 012357 127 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR--PLIDLRVSVTGGVHFDLVKRV---FRDIQ 201 (465)
Q Consensus 127 L~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~--p~LdllDEpts~LD~~l~rrI---lrdl~ 201 (465)
+..+.-... ..+.......+ ...||+.+++++ ..+ |.++++|||++++|+...+.+ ++++.
T Consensus 71 l~~~~L~~~----~~~~~~~~LSg-----Gq~qrl~laral-----~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~ 136 (176)
T cd03238 71 LIDVGLGYL----TLGQKLSTLSG-----GELQRVKLASEL-----FSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI 136 (176)
T ss_pred HHHcCCCcc----ccCCCcCcCCH-----HHHHHHHHHHHH-----hhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 222110000 00111111111 124899999999 788 999999999999999976654 45555
Q ss_pred HcCCCH------HHHHHHHhceEEEccCcEE
Q 012357 202 RVGQEP------EEIIHQISETVYPMYKAFI 226 (465)
Q Consensus 202 e~G~TI------~~vi~~i~d~V~~m~~G~I 226 (465)
++|.|+ .+.+ +.||++++|.+|..
T Consensus 137 ~~g~tvIivSH~~~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 137 DLGNTVILIEHNLDVL-SSADWIIDFGPGSG 166 (176)
T ss_pred hCCCEEEEEeCCHHHH-HhCCEEEEECCCCC
Confidence 568887 5555 57999999977643
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.75 E-value=7.1e-18 Score=181.37 Aligned_cols=178 Identities=13% Similarity=0.189 Sum_probs=136.7
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCC
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l 117 (465)
...++++.||.+++++++||++.+|+ .|||+|+||||||||+++|+|.+ |++|.|..++- .+++|+.|++.+
T Consensus 5 ~~~~ls~~~g~~~l~~~~~l~~~~G~---riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~----~~v~~l~Q~~~~ 77 (530)
T COG0488 5 TLENLSLAYGDRPLLENVSLTLNPGE---RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG----LRVGYLSQEPPL 77 (530)
T ss_pred EEeeeEEeeCCceeecCCcceeCCCC---EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----ceEEEeCCCCCc
Confidence 35789999999999999999999999 99999999999999999999999 99999998752 368999999999
Q ss_pred CccchHHHHHHhhhcc--------cccc--------------------cccccccc-----ccccCc-----ccccc---
Q 012357 118 TDYDTLLENIRGLKEG--------KAVQ--------------------VPIYDFKS-----SSRIGY-----RTLEV--- 156 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~--------~~~~--------------------~p~~d~~~-----~~~~~~-----~~~~l--- 156 (465)
.+..|+.+.+...... .... ...|+... ...++. ....+
T Consensus 78 ~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG 157 (530)
T COG0488 78 DPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGG 157 (530)
T ss_pred CCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHH
Confidence 9888888876652110 0000 00000000 000010 00111
Q ss_pred ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEec
Q 012357 157 PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPD 229 (465)
Q Consensus 157 ~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~ 229 (465)
...||.+|+++ ...|.++++||||..||...+..+-.-+.+. | |+ ...+..+|++++-++.|.+...
T Consensus 158 ~r~Rv~LA~aL-----~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y 231 (530)
T COG0488 158 WRRRVALARAL-----LEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPY 231 (530)
T ss_pred HHHHHHHHHHH-----hcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEe
Confidence 13799999999 8899999999999999999999988888765 6 77 7899999999999999976543
No 364
>PRK15453 phosphoribulokinase; Provisional
Probab=99.75 E-value=3e-18 Score=169.95 Aligned_cols=184 Identities=21% Similarity=0.349 Sum_probs=146.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcCC----CeeEEEECCeec-Ccc----------ccccccCC--CCCCccchHHHHHH
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYND-SSR----------IIDGNFDD--PRLTDYDTLLENIR 128 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllP----~sG~I~lDg~~~-~~~----------~ig~vfQ~--p~l~~~~tv~enL~ 128 (465)
+.+|||+|.|||||||+++.|...+. ..-.|..|+|+. .+. .-+..|++ |.++++..+.+.+.
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l~ 84 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLFR 84 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHHH
Confidence 45999999999999999999987762 355788899875 221 13458888 99999999999999
Q ss_pred hhhcccccccccccccc-----ccccCcc---cccc-ccchhhhhHhHHhhh----hccCcceeeeeeeecCccHHHHHH
Q 012357 129 GLKEGKAVQVPIYDFKS-----SSRIGYR---TLEV-PSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVKR 195 (465)
Q Consensus 129 ~l~~~~~~~~p~~d~~~-----~~~~~~~---~~~l-~~qRVlIaegl~aL~----d~~~p~LdllDEpts~LD~~l~rr 195 (465)
.+.++.....+.|++.. +.+..+. ...+ ++..|+|+||++.+. ..++..+|++++++...|.+++||
T Consensus 85 ~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~irR 164 (290)
T PRK15453 85 EYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWIQK 164 (290)
T ss_pred HHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHHHH
Confidence 99887777777765322 2222111 1122 568999999999874 257899999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhceEEEccCcEEEecCCcceEEee-----CCCCCCCccCCc
Q 012357 196 VFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII-----NKFNPFTGFQNP 250 (465)
Q Consensus 196 Ilrdl~e~G~TI~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~-----~~~~p~~~~~~p 250 (465)
+.||.++||+|.+.++++|..+. +.+..+|.|+...+||.+. ...|||.....|
T Consensus 165 I~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfqrvp~vdts~pf~~~~ip 223 (290)
T PRK15453 165 IHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQRVPTVDTSNPFIARDIP 223 (290)
T ss_pred HHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEEeCCccCCCCcccccCCC
Confidence 99999999999999999999996 9999999999999999763 355666655555
No 365
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.75 E-value=3.1e-18 Score=204.12 Aligned_cols=171 Identities=15% Similarity=0.143 Sum_probs=130.6
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCCccchHHHHHH
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL~ 128 (465)
.++|+|+||++++|+ +++|+||||||||||+++|+|++ |.+|.|.++| .++|++|+|.+++ .|+++||.
T Consensus 439 ~~~l~~i~l~i~~G~---~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------~iayv~Q~~~l~~-~Ti~eNI~ 508 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQ---LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------RISFSPQTSWIMP-GTIKDNII 508 (1490)
T ss_pred CcceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------EEEEEeCCCccCC-ccHHHHHH
Confidence 568999999999999 99999999999999999999999 9999999998 4899999999987 49999998
Q ss_pred hhhcccccccc-cc-------cc-----ccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHH
Q 012357 129 GLKEGKAVQVP-IY-------DF-----KSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (465)
Q Consensus 129 ~l~~~~~~~~p-~~-------d~-----~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l 192 (465)
+.......... .. +. .....++.....+ ..|||.||+|+ ..+|.+.++|||++++|+..
T Consensus 509 ~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl-----~~~~~illLDep~saLD~~~ 583 (1490)
T TIGR01271 509 FGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAV-----YKDADLYLLDSPFTHLDVVT 583 (1490)
T ss_pred hccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHH-----HcCCCEEEEeCCcccCCHHH
Confidence 75321100000 00 00 0000111111122 34999999999 77999999999999999998
Q ss_pred HHHHHHHH-H--HcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 193 VKRVFRDI-Q--RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 193 ~rrIlrdl-~--e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.+.+.+.+ . .+|.|+ ++.+. .||+++.|.+|.+...|...++.
T Consensus 584 ~~~i~~~~l~~~~~~~tvilvtH~~~~~~-~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 584 EKEIFESCLCKLMSNKTRILVTSKLEHLK-KADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCChHHHH-hCCEEEEEECCEEEEEcCHHHHH
Confidence 77776542 2 247787 55555 49999999999999999887764
No 366
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.75 E-value=3e-18 Score=163.44 Aligned_cols=176 Identities=36% Similarity=0.621 Sum_probs=149.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCeecCc------cccccccCCCCCCccchHHHHHHhhhccccc
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAV 136 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll--P~sG~I~lDg~~~~~------~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~ 136 (465)
++.+|||+|+||||||||++.|.+.+ +..+.+++|+++... ....+.|++|..++...+.+.+..+..+..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~v 84 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKAI 84 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCcc
Confidence 35599999999999999999999998 456788999986532 1245678889889988889999888888888
Q ss_pred cccccccccccccCccccccccchhhhhHhHHhhh-hccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 012357 137 QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (465)
Q Consensus 137 ~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~-d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~vi~~i~ 215 (465)
..|.|++..+.+.. .........++|+||.+++. +...+.+|+.++.+++.+.+..|++.|+..++|.+..+++.+|.
T Consensus 85 ~~p~~d~~~~~~~~-~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~~ 163 (209)
T PRK05480 85 EIPVYDYTEHTRSK-ETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYL 163 (209)
T ss_pred ccCcccccccccCC-CeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHHH
Confidence 88999988776544 33345567899999999987 57888999999999999999999999999889999999999999
Q ss_pred ceEEEccCcEEEecCCcceEEeeCCC
Q 012357 216 ETVYPMYKAFIEPDLQTAHIKIINKF 241 (465)
Q Consensus 216 d~V~~m~~G~I~~~g~~aDIiI~~~~ 241 (465)
.++.+++..++.+....||++|.++.
T Consensus 164 ~~~~~~~~~~i~~~~~~AD~vI~~~~ 189 (209)
T PRK05480 164 STVRPMHLQFIEPSKRYADIIIPEGG 189 (209)
T ss_pred HhhhhhHHhhccHhhcceeEEecCCC
Confidence 99999999999999999999997654
No 367
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.8e-18 Score=166.98 Aligned_cols=184 Identities=12% Similarity=0.057 Sum_probs=125.8
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------ccccc
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIID 109 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig 109 (465)
-.++++..|+++.+|+++|+++++|+ -.+|+||||||||||++.++|.. |++|.+.+.|.... ++.||
T Consensus 33 ~l~~v~v~r~gk~iL~~isW~V~~ge---~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG 109 (257)
T COG1119 33 ELKNVSVRRNGKKILGDLSWQVNPGE---HWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG 109 (257)
T ss_pred EecceEEEECCEeeccccceeecCCC---cEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence 45889999999999999999999999 99999999999999999999999 89999999997643 45677
Q ss_pred cccC--CCCCCccchHHHHHHhhhcccccccc-ccccc-------cccccCc--------cccc-cccchhhhhHhHHhh
Q 012357 110 GNFD--DPRLTDYDTLLENIRGLKEGKAVQVP-IYDFK-------SSSRIGY--------RTLE-VPSSRIVIIEGIYAL 170 (465)
Q Consensus 110 ~vfQ--~p~l~~~~tv~enL~~l~~~~~~~~p-~~d~~-------~~~~~~~--------~~~~-l~~qRVlIaegl~aL 170 (465)
++.- +..+....++++.+............ .++.. ..+..+. ..++ ...+||+||||+
T Consensus 110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRAL--- 186 (257)
T COG1119 110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARAL--- 186 (257)
T ss_pred ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHH---
Confidence 7532 11222334455444332110000000 11100 0011111 1111 134899999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHHHHHHHc-----CCCH------HHHHHHHhceEEEccCcEEEecC
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-----GQEP------EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~-----G~TI------~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
...|.++++|||+.|+|.....++++.+.+- +.++ .+.+-...+++..+.+|+++.+|
T Consensus 187 --v~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 187 --VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred --hcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 8999999999999999998777776555542 3333 45555566788888888887665
No 368
>PLN03073 ABC transporter F family; Provisional
Probab=99.74 E-value=7.2e-18 Score=187.92 Aligned_cols=187 Identities=12% Similarity=0.066 Sum_probs=123.4
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc----CCCeeEEEECCeec-----C-----
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF----MPSIAVITMDNYND-----S----- 104 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl----lP~sG~I~lDg~~~-----~----- 104 (465)
-.+++++.|+...+|+++||++.+|+ .+||+|+||||||||+++|+|. .|+.|.|.+.++.. +
T Consensus 179 ~i~nls~~y~~~~ll~~isl~i~~Ge---~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v 255 (718)
T PLN03073 179 HMENFSISVGGRDLIVDASVTLAFGR---HYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCV 255 (718)
T ss_pred EEceEEEEeCCCEEEECCEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHH
Confidence 44789999988889999999999999 9999999999999999999985 37788887544321 0
Q ss_pred -----------ccccccccCCCCCCcc----------------chHHHHHHhhhc----cccccccccccccccccCc--
Q 012357 105 -----------SRIIDGNFDDPRLTDY----------------DTLLENIRGLKE----GKAVQVPIYDFKSSSRIGY-- 151 (465)
Q Consensus 105 -----------~~~ig~vfQ~p~l~~~----------------~tv~enL~~l~~----~~~~~~p~~d~~~~~~~~~-- 151 (465)
++.+++++|++.+... ..+.+.+..+.. ......+..-......++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~ 335 (718)
T PLN03073 256 LNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTP 335 (718)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCCh
Confidence 1124455554322110 011111111000 0000000000000000110
Q ss_pred -----ccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhce
Q 012357 152 -----RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISET 217 (465)
Q Consensus 152 -----~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~ 217 (465)
....+ ..+|+.|++++ ...|.++++||||++||+....++..-+.+.|.|+ .+.+..+||+
T Consensus 336 ~~~~~~~~~LSgG~k~rv~LA~aL-----~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 336 EMQVKATKTFSGGWRMRIALARAL-----FIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred HHHhCchhhCCHHHHHHHHHHHHH-----hcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCE
Confidence 01112 23999999999 89999999999999999999888887777777777 7889999999
Q ss_pred EEEccCcEEE-ecCCcc
Q 012357 218 VYPMYKAFIE-PDLQTA 233 (465)
Q Consensus 218 V~~m~~G~I~-~~g~~a 233 (465)
++.+++|++. ..|+..
T Consensus 411 i~~l~~g~i~~~~g~~~ 427 (718)
T PLN03073 411 ILHLHGQKLVTYKGDYD 427 (718)
T ss_pred EEEEECCEEEEeCCCHH
Confidence 9999999986 345433
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.74 E-value=2.6e-18 Score=198.49 Aligned_cols=192 Identities=17% Similarity=0.148 Sum_probs=144.9
Q ss_pred ceeeeeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------c
Q 012357 36 IVPIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------S 105 (465)
Q Consensus 36 ~~~v~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~ 105 (465)
.+-..+|++..|.. ..||++||++|++|| -|||+|.+|||||||+.+|-.+. |.+|.|.+||.++. |
T Consensus 1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~e---KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGE---KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred CeEEEEEeEEEeCCCCcchhcCceEEEcCCc---eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHH
Confidence 45566888888854 589999999999999 99999999999999999999999 89999999999875 6
Q ss_pred cccccccCCCCCCccchHHHHHHhhhcccc---------cccc----cccccccccc--Ccccccc-ccchhhhhHhHHh
Q 012357 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKA---------VQVP----IYDFKSSSRI--GYRTLEV-PSSRIVIIEGIYA 169 (465)
Q Consensus 106 ~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~---------~~~p----~~d~~~~~~~--~~~~~~l-~~qRVlIaegl~a 169 (465)
++++.+||+|.+|. -|++.||.......+ .... .........+ ++...++ ..|-+.+|||+
T Consensus 1214 srlsIIPQdPvLFs-GTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL-- 1290 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLFS-GTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARAL-- 1290 (1381)
T ss_pred hcCeeeCCCCceec-CccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHH--
Confidence 78999999999885 588888875432211 0000 0001111111 1222333 24779999999
Q ss_pred hhhccCcceeeeeeeecCccHHHHHHHHHHHHHc--CCCHHHHHHHH-----hceEEEccCcEEEecCCcceEE
Q 012357 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEPEEIIHQI-----SETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 170 L~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~--G~TI~~vi~~i-----~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.-+++++++||+|+++|+++=.-|.+-++++ +.|+..++|++ ||+|.+|++|++.+.+.++.+.
T Consensus 1291 ---Lr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1291 ---LRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred ---hccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHH
Confidence 8899999999999999999766666666654 77773222221 7999999999999999888774
No 370
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.73 E-value=3.8e-18 Score=194.38 Aligned_cols=194 Identities=13% Similarity=0.025 Sum_probs=153.6
Q ss_pred eceeeeeeeEeeeCcEE-EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------
Q 012357 35 EIVPIEDTLSFEKGFFI-VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------- 104 (465)
Q Consensus 35 ~~~~v~~~ls~~~g~~~-aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------- 104 (465)
....+.+++++.|+... |++++|+.+++|| ++|+.|+|||||||++++|.|.. |++|.+.+.|++..
T Consensus 562 ~~~~~~~~L~k~y~~~~~Av~~ls~~V~~ge---cfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~ 638 (885)
T KOG0059|consen 562 SSALVLNNLSKVYGGKDGAVRGLSFAVPPGE---CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQV 638 (885)
T ss_pred cceEEEcceeeeecchhhhhcceEEEecCCc---eEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhh
Confidence 35678899999998777 9999999999999 99999999999999999999999 99999999998764
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhcccccccccc---------ccccccccCc--cccc-cccchhhhhHhHHhhhh
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY---------DFKSSSRIGY--RTLE-VPSSRIVIIEGIYALSE 172 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~---------d~~~~~~~~~--~~~~-l~~qRVlIaegl~aL~d 172 (465)
++.+||.||+..+++.+|.+|++.....-+....... .......... ...+ .-+.|+-++-|+
T Consensus 639 ~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aial----- 713 (885)
T KOG0059|consen 639 RKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIAL----- 713 (885)
T ss_pred hhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHH-----
Confidence 3459999999999999999999988653222110000 0000000000 1111 123788899999
Q ss_pred ccCcceeeeeeeecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 173 KLRPLIDLRVSVTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l---~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.-.|.+.++|||++|+||.. +|.+++++.+.|+.+ |+..+..|+|+.+|.+|++..-|...++.
T Consensus 714 ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 714 IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 78999999999999999975 556778888877555 99999999999999999999988887764
No 371
>PTZ00243 ABC transporter; Provisional
Probab=99.73 E-value=9.7e-18 Score=200.32 Aligned_cols=176 Identities=16% Similarity=0.199 Sum_probs=131.4
Q ss_pred eeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCCccchH
Q 012357 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTL 123 (465)
Q Consensus 45 ~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv 123 (465)
+.++...+|+++||++++|+ +++|+||||||||||+++|+|++ |++|.|.+. +.++|++|+|.+++ .|+
T Consensus 668 ~~~~~~~iL~~isl~i~~G~---~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------~~i~yv~Q~~~l~~-~Tv 737 (1560)
T PTZ00243 668 FELEPKVLLRDVSVSVPRGK---LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------RSIAYVPQQAWIMN-ATV 737 (1560)
T ss_pred cccCCceeEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------CeEEEEeCCCccCC-CcH
Confidence 33456779999999999999 99999999999999999999999 999999864 46999999998875 699
Q ss_pred HHHHHhhhcccccccc-ccc-------c-----ccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecC
Q 012357 124 LENIRGLKEGKAVQVP-IYD-------F-----KSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGG 187 (465)
Q Consensus 124 ~enL~~l~~~~~~~~p-~~d-------~-----~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~ 187 (465)
++|+.+.......... ..+ . ......+.....+ ..|||.||+|+ ..+|.+.++|||+++
T Consensus 738 ~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl-----~~~p~illLDEP~sa 812 (1560)
T PTZ00243 738 RGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAV-----YANRDVYLLDDPLSA 812 (1560)
T ss_pred HHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHH-----hcCCCEEEEcCcccc
Confidence 9999874321100000 000 0 0011111111112 34999999999 779999999999999
Q ss_pred ccHHHHHHHHHHH---HHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 188 VHFDLVKRVFRDI---QRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 188 LD~~l~rrIlrdl---~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
||+....++++.+ ..+|+|+ .+.+ ..||++++|++|++...|.+.++.
T Consensus 813 LD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~-~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 813 LDAHVGERVVEECFLGALAGKTRVLATHQVHVV-PRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEecCHHHHH
Confidence 9998777666543 1247777 5555 469999999999999999888764
No 372
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.72 E-value=8.2e-18 Score=148.92 Aligned_cols=123 Identities=21% Similarity=0.280 Sum_probs=91.0
Q ss_pred EeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccccccCCCCCCccchHH
Q 012357 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLL 124 (465)
Q Consensus 53 L~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~vfQ~p~l~~~~tv~ 124 (465)
|++||+.+++|+ +++|+|+||||||||+++|+|.. |.+|.|.++|.++. ++.+++++|++.+++..++.
T Consensus 1 L~~v~~~i~~g~---~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGE---IVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTS---EEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCC---EEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999 99999999999999999999999 99999999998764 35689999999888888888
Q ss_pred HHHHhhhcc---ccccccccccccccccCccccc---cccchhhhhHhHHhhhhccCcceeeeeeeec
Q 012357 125 ENIRGLKEG---KAVQVPIYDFKSSSRIGYRTLE---VPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (465)
Q Consensus 125 enL~~l~~~---~~~~~p~~d~~~~~~~~~~~~~---l~~qRVlIaegl~aL~d~~~p~LdllDEpts 186 (465)
++...-... .......+ .....+..... ...||+.|++++ ..+|.+.++||||+
T Consensus 78 ~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~~~LS~Ge~~rl~la~al-----~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 ENESDERIEEVLKKLGLEDL---LDRKIGQRASSLSGGEKQRLALARAL-----LKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHHHTTHGGG---TGSBGTSCGGGSCHHHHHHHHHHHHH-----HTTSSEEEEESTTT
T ss_pred cccccccccccccccccccc---cccccccccchhhHHHHHHHHHHHHH-----HcCCCEEEEeCCCC
Confidence 873221100 00000000 00111101111 234899999999 88999999999985
No 373
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=3.7e-17 Score=179.48 Aligned_cols=180 Identities=16% Similarity=0.155 Sum_probs=138.4
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C---CeeEEEECCeecC----ccccccccCCCCCCcc
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P---~sG~I~lDg~~~~----~~~ig~vfQ~p~l~~~ 120 (465)
.+++|++||..+++|+ +.||.||||||||||+++|+|.. + .+|.|.+||+... ++..||+.|+..+++.
T Consensus 42 ~k~iL~~vsg~~~~Ge---l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~ 118 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGE---LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPT 118 (613)
T ss_pred cceeeeCcEEEEecCe---EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccc
Confidence 4789999999999999 99999999999999999999998 3 5899999996543 4568999999999999
Q ss_pred chHHHHHHhhhc---cccccccc---------cccc----cccccCc---cccc-cccchhhhhHhHHhhhhccCcceee
Q 012357 121 DTLLENIRGLKE---GKAVQVPI---------YDFK----SSSRIGY---RTLE-VPSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 121 ~tv~enL~~l~~---~~~~~~p~---------~d~~----~~~~~~~---~~~~-l~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
+||+|++.+... ........ .+.. .+.+.+. +-.+ .+.+||.|+-=+ ..+|.+++
T Consensus 119 LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~El-----l~~P~iLf 193 (613)
T KOG0061|consen 119 LTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALEL-----LTDPSILF 193 (613)
T ss_pred ccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHH-----HcCCCEEE
Confidence 999999987431 11100000 0000 1111211 0111 245899999888 89999999
Q ss_pred eeeeecCccHHHHH---HHHHHHHHcCCCH-------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 181 RVSVTGGVHFDLVK---RVFRDIQRVGQEP-------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 181 lDEpts~LD~~l~r---rIlrdl~e~G~TI-------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+||||+|||..... +++++++++|+|| ...+-+..|++..+.+|.++..|+..+..
T Consensus 194 lDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 194 LDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred ecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999998654 5568888889999 34455677999999999999999987654
No 374
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=7.2e-18 Score=151.93 Aligned_cols=145 Identities=17% Similarity=0.171 Sum_probs=112.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C---CeeEEEECCeecC-----cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYNDS-----SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P---~sG~I~lDg~~~~-----~~~ig~ 110 (465)
++|++...++.-.|-++|++|.+|| |+.|.||||||||||+.-+.|.+ + -+|++.++++.+. ++++|+
T Consensus 5 l~nvsl~l~g~cLLa~~n~Tia~Ge---ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi 81 (213)
T COG4136 5 LKNVSLRLPGSCLLANVNFTIAKGE---IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI 81 (213)
T ss_pred eeeeeecCCCceEEEeeeEEecCCc---EEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence 4678888888899999999999999 99999999999999999999999 5 3899999998754 678999
Q ss_pred ccCCCCCCccchHHHHHHhhhc----cccccccccccccccccCc--------cccc-cccchhhhhHhHHhhhhccCcc
Q 012357 111 NFDDPRLTDYDTLLENIRGLKE----GKAVQVPIYDFKSSSRIGY--------RTLE-VPSSRIVIIEGIYALSEKLRPL 177 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~----~~~~~~p~~d~~~~~~~~~--------~~~~-l~~qRVlIaegl~aL~d~~~p~ 177 (465)
.||++-+|+..+|.+|+.+... |...+...+ ...++++. ...+ ...+||.+.+++ ...|+
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~--aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~L-----la~Pk 154 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALPATLKGNARRNAAN--AALERSGLDGAFHQDPATLSGGQRARVALLRAL-----LAQPK 154 (213)
T ss_pred eecccccccccccccceEEecCcccccHHHHhhHH--HHHHHhccchhhhcChhhcCcchHHHHHHHHHH-----HhCcc
Confidence 9999999999999999987432 221111111 11122211 1111 124789999999 67899
Q ss_pred eeeeeeeecCccHHHHH
Q 012357 178 IDLRVSVTGGVHFDLVK 194 (465)
Q Consensus 178 LdllDEpts~LD~~l~r 194 (465)
++++|||.+.+|..+..
T Consensus 155 ~lLLDEPFS~LD~ALR~ 171 (213)
T COG4136 155 ALLLDEPFSRLDVALRD 171 (213)
T ss_pred eeeeCCchhHHHHHHHH
Confidence 99999999999997643
No 375
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=6.5e-17 Score=148.42 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=119.0
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------------ccccccccC
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------------SRIIDGNFD 113 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------------~~~ig~vfQ 113 (465)
.++++++||+++.|| ++++-||||||||||+|+|.+.. |++|.|.+.....+ ++.+||+.|
T Consensus 24 LpV~~~vslsV~aGE---CvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQ 100 (235)
T COG4778 24 LPVLRNVSLSVNAGE---CVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQ 100 (235)
T ss_pred eeeeeceeEEecCcc---EEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHH
Confidence 579999999999999 99999999999999999999999 99999988654321 356899999
Q ss_pred CCCCCccchHHHHHHhhhc--ccc--------------ccccc--cccccccccCccccccccchhhhhHhHHhhhhccC
Q 012357 114 DPRLTDYDTLLENIRGLKE--GKA--------------VQVPI--YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~--~~~--------------~~~p~--~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~ 175 (465)
.....+.....+.++.+.- |.. ...|. +.......++ ...|||-|++|+ ..+
T Consensus 101 FLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSG-----GEqQRVNIaRgf-----ivd 170 (235)
T COG4778 101 FLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSG-----GEQQRVNIARGF-----IVD 170 (235)
T ss_pred HHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCC-----chheehhhhhhh-----hcc
Confidence 8777777666777666431 111 11111 1111111111 235999999999 778
Q ss_pred cceeeeeeeecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEcc
Q 012357 176 PLIDLRVSVTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMY 222 (465)
Q Consensus 176 p~LdllDEpts~LD~~l---~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~ 222 (465)
-.++++||||++||... .-+++++-+.+|..+ .++-+..|||+..|.
T Consensus 171 ~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 171 YPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 88999999999999875 445667777788877 677788999977664
No 376
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.70 E-value=3.4e-17 Score=164.24 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=133.3
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhcC---CCee---EEEECCeecCcc---cccc--ccCCCCCCccchHHHHHHhhh
Q 012357 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIA---VITMDNYNDSSR---IIDG--NFDDPRLTDYDTLLENIRGLK 131 (465)
Q Consensus 63 Ge~~~IigIiGpSGSGKSTL~r~L~gll---P~sG---~I~lDg~~~~~~---~ig~--vfQ~p~l~~~~tv~enL~~l~ 131 (465)
...|++|||+||||||||||+++|.+++ |+.| .+.+|||+..+. ..++ .+..|..++...+.+.+..++
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 3458899999999999999999999987 4444 467899886532 2333 233456666666677777777
Q ss_pred cccc-ccccccccccccccCccccccccchhhhhHhHHhhhh-c----------cCcceeeeeeeecCccHHHHHHHHHH
Q 012357 132 EGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-K----------LRPLIDLRVSVTGGVHFDLVKRVFRD 199 (465)
Q Consensus 132 ~~~~-~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d-~----------~~p~LdllDEpts~LD~~l~rrIlrd 199 (465)
.+.. +..|.|++..+++.........+.+|+|+||+++|.+ . .+..+|++++++++.|....|.+.|.
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~ 218 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRF 218 (290)
T ss_pred CCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 7764 8899999999888765555567889999999999973 3 35899999999999988876655543
Q ss_pred --HHHcC-------------CCH----HHHHHHHhceEEEccCcEEEecCCcceEEeeCCC
Q 012357 200 --IQRVG-------------QEP----EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (465)
Q Consensus 200 --l~e~G-------------~TI----~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~ 241 (465)
+.+++ .+- ...++.|.....++...+|.|++..||+|++.+.
T Consensus 219 ~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~ 279 (290)
T TIGR00554 219 LKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGA 279 (290)
T ss_pred HHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCC
Confidence 33322 222 2334557888899999999999999999997443
No 377
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.69 E-value=9e-17 Score=151.87 Aligned_cols=173 Identities=36% Similarity=0.651 Sum_probs=142.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCeecCc------cccccccCCCCCCccchHHHHHHhhhcccccccc
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP 139 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll--P~sG~I~lDg~~~~~------~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p 139 (465)
++||+||||||||||+++|.+++ .....+.+|+++... ......+++|..+++..+.+.+..+..+.....|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999998 457889999987431 1234567788888887777888877777778888
Q ss_pred ccccccccccCccccccccchhhhhHhHHhhh-hccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceE
Q 012357 140 IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETV 218 (465)
Q Consensus 140 ~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~-d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~vi~~i~d~V 218 (465)
.|++..+.+.... ....+..++|++|.+++. +...+.+|+..++.++.|.+..|++.|+..++|.+.......|..+.
T Consensus 81 ~~d~~~~~~~~~~-~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~ 159 (198)
T cd02023 81 VYDFKTHSRLKET-VTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159 (198)
T ss_pred ccccccCcccCCc-eecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence 8988877655322 245667899999999987 46778889999999999988888999999899999988889999999
Q ss_pred EEccCcEEEecCCcceEEeeCCC
Q 012357 219 YPMYKAFIEPDLQTAHIKIINKF 241 (465)
Q Consensus 219 ~~m~~G~I~~~g~~aDIiI~~~~ 241 (465)
.+.+..++.+....||++|.++.
T Consensus 160 ~~~~~~~i~~~~~~aD~ii~~~~ 182 (198)
T cd02023 160 KPMHEQFIEPTKRYADVIIPRGG 182 (198)
T ss_pred hhhHHHhCccchhceeEEECCCC
Confidence 99999999999999999987543
No 378
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.69 E-value=6.3e-17 Score=161.28 Aligned_cols=168 Identities=29% Similarity=0.538 Sum_probs=139.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CCee-EEEECCeecC----ccccccccCCCCCCccchHHHHHHhhhcccccccccc
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYNDS----SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-P~sG-~I~lDg~~~~----~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~ 141 (465)
++||+|+||||||||++.|++++ +..+ .|.+|+++.. ++..|+.+++|...+...+.+++..++.+..+..|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 58999999999999999999999 5555 6888887532 2346778888877666677888888888888889999
Q ss_pred ccccccccCccccccccchhhhhHhHHhhhh-ccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEE
Q 012357 142 DFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYP 220 (465)
Q Consensus 142 d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d-~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~vi~~i~d~V~~ 220 (465)
++....... .....+.+++|+||++++++ ..+..+|+..+++++.+.+..|++.|++.++|.+..++.+++.. ..+
T Consensus 81 ~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~-r~~ 157 (273)
T cd02026 81 NHVTGLIDP--PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEA-RKP 157 (273)
T ss_pred cccCCCcCC--cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHh-hch
Confidence 888765332 12345578999999998874 78899999999999999999999999999999999998888865 488
Q ss_pred ccCcEEEecCCcceEEee
Q 012357 221 MYKAFIEPDLQTAHIKII 238 (465)
Q Consensus 221 m~~G~I~~~g~~aDIiI~ 238 (465)
.+..+|.|+...||++|.
T Consensus 158 ~~~~~I~P~~~~ADvVI~ 175 (273)
T cd02026 158 DFEAYIDPQKQYADVVIQ 175 (273)
T ss_pred hHHHHhccccccCcEEEE
Confidence 899999999999999984
No 379
>PRK07429 phosphoribulokinase; Provisional
Probab=99.67 E-value=2.2e-16 Score=161.04 Aligned_cols=172 Identities=27% Similarity=0.505 Sum_probs=143.1
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC-CC-eeEEEECCeecC----ccccccccCCCCCCccchHHHHHHhhhcccccc
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNYNDS----SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ 137 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll-P~-sG~I~lDg~~~~----~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~ 137 (465)
+++++|||+|+||||||||++.|++++ +. ...+.+|+++.. ++..++.+.+|...+...+.+++..++.+..+.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I~ 85 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPIL 85 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCcee
Confidence 468899999999999999999999998 54 468899998632 234677777787777778888998888888888
Q ss_pred ccccccccccccCccccccccchhhhhHhHHhhhh-ccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 012357 138 VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISE 216 (465)
Q Consensus 138 ~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d-~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~vi~~i~d 216 (465)
.|.|++....... .....+.+++|+||++++++ ..++.+|+..+++++.+.+..|++.|+..++|.+..++...+..
T Consensus 86 ~P~yd~~~g~~~~--~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~~ 163 (327)
T PRK07429 86 KPIYNHETGTFDP--PEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIEA 163 (327)
T ss_pred cceeecCCCCcCC--cEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 9999988765433 23355678999999998774 56789999999999999999999999999999999888877764
Q ss_pred eEEEccCcEEEecCCcceEEee
Q 012357 217 TVYPMYKAFIEPDLQTAHIKII 238 (465)
Q Consensus 217 ~V~~m~~G~I~~~g~~aDIiI~ 238 (465)
..+.+..+|.|....||++|.
T Consensus 164 -r~pd~~~yI~P~k~~ADiVI~ 184 (327)
T PRK07429 164 -REPDFEAYIRPQRQWADVVIQ 184 (327)
T ss_pred -hCccHhhhhcccccCCCEEEE
Confidence 588899999999999999985
No 380
>PRK05439 pantothenate kinase; Provisional
Probab=99.65 E-value=3.6e-16 Score=157.95 Aligned_cols=179 Identities=18% Similarity=0.223 Sum_probs=138.9
Q ss_pred cCccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecCccc---ccc--ccCCCCCCccchHHHHHHhh
Q 012357 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDSSRI---IDG--NFDDPRLTDYDTLLENIRGL 130 (465)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~~~~---ig~--vfQ~p~l~~~~tv~enL~~l 130 (465)
....|++|||.|++|||||||++.|..++ . ..+.|++|||+..... -+. .+..|..++...+.+.|..+
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHH
Confidence 34558999999999999999999999876 2 4789999999865322 121 34568889999999999999
Q ss_pred hcccc-ccccccccccccccCccccccccchhhhhHhHHhhh-hcc------CcceeeeeeeecCccHHHHHHHHHHHH-
Q 012357 131 KEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKL------RPLIDLRVSVTGGVHFDLVKRVFRDIQ- 201 (465)
Q Consensus 131 ~~~~~-~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~-d~~------~p~LdllDEpts~LD~~l~rrIlrdl~- 201 (465)
+.|.. +..|.|++....+...+...+.+.+|+|+||++++. +.. +..+|++++++++.|....|.+.|.+.
T Consensus 162 k~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~l 241 (311)
T PRK05439 162 KSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKL 241 (311)
T ss_pred HcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHH
Confidence 98876 899999999988775555667788999999999985 454 888999999999988765554444443
Q ss_pred ----H----------cCCCHH----HHHHHHhceEEEccCcEEEecCCcceEEeeCC
Q 012357 202 ----R----------VGQEPE----EIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (465)
Q Consensus 202 ----e----------~G~TI~----~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~ 240 (465)
. .|.+.. .+...|.....++.+.+|.|++..||+|++.+
T Consensus 242 r~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~ 298 (311)
T PRK05439 242 RETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKG 298 (311)
T ss_pred HHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCC
Confidence 1 244442 23335556788999999999999999999743
No 381
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.6e-16 Score=144.87 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=108.8
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc------ccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~------~~ig~vf 112 (465)
.++++...+....+.++||++.+|+ ++-|.||||||||||+|+|+|++ |++|.|.++|.++.. +.+-|+-
T Consensus 5 a~~L~~~R~e~~lf~~L~f~l~~Ge---~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 5 AENLSCERGERTLFSDLSFTLNAGE---ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred hhhhhhccCcceeecceeEEEcCCC---EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 3567888889999999999999999 99999999999999999999999 999999999987652 2344555
Q ss_pred CCCCCCccchHHHHHHhhhccccc-c-cccc----cccccccc--Ccccccc-ccchhhhhHhHHhhhhccCcceeeeee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAV-Q-VPIY----DFKSSSRI--GYRTLEV-PSSRIVIIEGIYALSEKLRPLIDLRVS 183 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~-~-~p~~----d~~~~~~~--~~~~~~l-~~qRVlIaegl~aL~d~~~p~LdllDE 183 (465)
-.+..-..+|+.||+.|+..-... . ...+ ........ +...++. ...||.||+=. .....+-++||
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~-----ls~~pLWiLDE 156 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLW-----LSPAPLWILDE 156 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHH-----cCCCCceeecC
Confidence 566677789999999998642111 0 0000 00111111 1111112 23678888877 67778999999
Q ss_pred eecCccHHHHHHHH
Q 012357 184 VTGGVHFDLVKRVF 197 (465)
Q Consensus 184 pts~LD~~l~rrIl 197 (465)
|++++|..-...+-
T Consensus 157 P~taLDk~g~a~l~ 170 (209)
T COG4133 157 PFTALDKEGVALLT 170 (209)
T ss_pred cccccCHHHHHHHH
Confidence 99999998655443
No 382
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.64 E-value=3.8e-16 Score=151.34 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=54.8
Q ss_pred cchhhhhHhHHhhhhccCc--ceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEc-----
Q 012357 158 SSRIVIIEGIYALSEKLRP--LIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPM----- 221 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~p--~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m----- 221 (465)
.||+.|++++ ...| .++++||||+++|+....++ ++++.++|.|+ ++.+ .+||++++|
T Consensus 143 ~qrv~laral-----~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~-~~~d~i~~l~~~~~ 216 (226)
T cd03270 143 AQRIRLATQI-----GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTI-RAADHVIDIGPGAG 216 (226)
T ss_pred HHHHHHHHHH-----HhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHH-HhCCEEEEeCCCcc
Confidence 4999999999 6666 69999999999999875554 56666678887 5555 589999999
Q ss_pred -cCcEEEecC
Q 012357 222 -YKAFIEPDL 230 (465)
Q Consensus 222 -~~G~I~~~g 230 (465)
++|+|+++|
T Consensus 217 ~~~G~iv~~g 226 (226)
T cd03270 217 VHGGEIVAQG 226 (226)
T ss_pred ccCCEEEecC
Confidence 999998765
No 383
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.63 E-value=8.8e-16 Score=145.19 Aligned_cols=186 Identities=12% Similarity=0.221 Sum_probs=132.3
Q ss_pred eEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCC-----eeEEEECCeecC------c-----c
Q 012357 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPS-----IAVITMDNYNDS------S-----R 106 (465)
Q Consensus 43 ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~-----sG~I~lDg~~~~------~-----~ 106 (465)
+..+.|...++++||+++.+|| |-|++|.||||||-.++.|+|...+ +-...+++.++- + +
T Consensus 13 ~~TsqG~vK~VD~v~ltlnEGE---i~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~ 89 (330)
T COG4170 13 FKTSQGWVKAVDRVSMTLNEGE---IRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGH 89 (330)
T ss_pred EecCCCceEeeeeeeeeeccce---eeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhcc
Confidence 3445577899999999999999 9999999999999999999999843 334445554421 1 3
Q ss_pred ccccccCCCC--CCccchHHHHHHhhhcc---ccccccccccc------cccccCcc------------ccccccchhhh
Q 012357 107 IIDGNFDDPR--LTDYDTLLENIRGLKEG---KAVQVPIYDFK------SSSRIGYR------------TLEVPSSRIVI 163 (465)
Q Consensus 107 ~ig~vfQ~p~--l~~~~tv~enL~~l~~~---~~~~~p~~d~~------~~~~~~~~------------~~~l~~qRVlI 163 (465)
.++|+||+|. +-+..++...+..-... +......|.+. ...+++.+ ......|+|+|
T Consensus 90 ~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMI 169 (330)
T COG4170 90 NVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMI 169 (330)
T ss_pred chhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeee
Confidence 5789999986 45666665554331111 00111111111 11222221 11223499999
Q ss_pred hHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHH---HHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcc
Q 012357 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDI---QRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (465)
Q Consensus 164 aegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl---~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~a 233 (465)
|-|+ +..|.+++.||||.++++.+..++.|-+ ++. |.|| ...+.+|||++-++|.|+-+++...+
T Consensus 170 A~A~-----AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e 244 (330)
T COG4170 170 AIAL-----ANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSE 244 (330)
T ss_pred ehhh-----ccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchh
Confidence 9999 9999999999999999998866665544 443 7777 67899999999999999999999988
Q ss_pred eEE
Q 012357 234 HIK 236 (465)
Q Consensus 234 DIi 236 (465)
+++
T Consensus 245 ~l~ 247 (330)
T COG4170 245 ELV 247 (330)
T ss_pred HHh
Confidence 875
No 384
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.61 E-value=2.2e-15 Score=162.22 Aligned_cols=184 Identities=12% Similarity=0.120 Sum_probs=133.0
Q ss_pred eeeeeeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCC
Q 012357 37 VPIEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDD 114 (465)
Q Consensus 37 ~~v~~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~ 114 (465)
.-..+++++.|+. +.+++++||.+.+|+ .|||+||||+|||||++.|.|.+ |.+|.|.+... -++||..|+
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~---riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~----v~igyf~Q~ 393 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDLSFRIDRGD---RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET----VKIGYFDQH 393 (530)
T ss_pred eEEEeccccccCCCceeecCceEEecCCC---EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc----eEEEEEEeh
Confidence 3456889999965 799999999999999 99999999999999999999999 99999987532 368999998
Q ss_pred CC-CCccchHHHHHHhhhcccc-cccc----ccccccccc-cCcccccc-ccchhhhhHhHHhhhhccCcceeeeeeeec
Q 012357 115 PR-LTDYDTLLENIRGLKEGKA-VQVP----IYDFKSSSR-IGYRTLEV-PSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (465)
Q Consensus 115 p~-l~~~~tv~enL~~l~~~~~-~~~p----~~d~~~~~~-~~~~~~~l-~~qRVlIaegl~aL~d~~~p~LdllDEpts 186 (465)
.. +.+..|+.+++........ .... .+-|..... .....++. ...|++++.-+ ..+|.++++||||.
T Consensus 394 ~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll-----~~~pNvLiLDEPTN 468 (530)
T COG0488 394 RDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLL-----LQPPNLLLLDEPTN 468 (530)
T ss_pred hhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHh-----ccCCCEEEEcCCCc
Confidence 73 3455688888876542211 1110 111111000 00001111 23788888888 77999999999999
Q ss_pred CccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEec-CCcc
Q 012357 187 GVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPD-LQTA 233 (465)
Q Consensus 187 ~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~-g~~a 233 (465)
.||+..+..+..-+..-.-|+ ...+..+|++++.+.+ .+... |...
T Consensus 469 hLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~ 521 (530)
T COG0488 469 HLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYE 521 (530)
T ss_pred cCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHH
Confidence 999999888877777764455 7889999999999987 54443 4433
No 385
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.56 E-value=4.9e-15 Score=143.70 Aligned_cols=177 Identities=21% Similarity=0.310 Sum_probs=127.8
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeE----EEECCeecCc---cccccccC--CCCCCccchHHHHHHhhhcc
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAV----ITMDNYNDSS---RIIDGNFD--DPRLTDYDTLLENIRGLKEG 133 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~----I~lDg~~~~~---~~ig~vfQ--~p~l~~~~tv~enL~~l~~~ 133 (465)
.++.++||+|+||||||||++.|++++ +..|. |++|+++... ...++..+ .|..++.....+.+..+..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~l~~l~~~ 110 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRRLRAG 110 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHHHHHHHcC
Confidence 447799999999999999999999999 66776 8999987652 23444433 44555555556666666665
Q ss_pred c-cccccccccccccccCccccccccchhhhhHhHHhhhh-----ccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH
Q 012357 134 K-AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (465)
Q Consensus 134 ~-~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d-----~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI 207 (465)
. ....|.|++...+.........+..+++|++|.+++.+ .+.+..|...+.+++.+... +|+.++..+.|.+.
T Consensus 111 ~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~-~R~~~R~~~~g~s~ 189 (229)
T PRK09270 111 DDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLR-ERLVARKLAGGLSP 189 (229)
T ss_pred CCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHH-HHHHHHHHhcCCCH
Confidence 5 67788888877665442222223578999999988764 45678889999998877654 44444445679998
Q ss_pred HHHHHHHhceEEEccCcEEEecCCcceEEeeCCCC
Q 012357 208 EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (465)
Q Consensus 208 ~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~~ 242 (465)
.++.+.+..+..+.+ .++.+....||++|.|+..
T Consensus 190 ~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~ 223 (229)
T PRK09270 190 EAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTAT 223 (229)
T ss_pred HHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCC
Confidence 888888876666665 4677889999999987553
No 386
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.1e-14 Score=152.22 Aligned_cols=173 Identities=17% Similarity=0.176 Sum_probs=131.6
Q ss_pred EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc--------cccccccCCC---CCCc
Q 012357 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDGNFDDP---RLTD 119 (465)
Q Consensus 52 aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~--------~~ig~vfQ~p---~l~~ 119 (465)
.++++||++.+|| |+||.|--|||+|-|+++|.|.- +.+|+|.+||..... ..++|++.+. .++.
T Consensus 274 ~~~dvSf~vr~GE---IlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGE---ILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCc---EEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 6899999999999 99999999999999999999988 789999999997652 3488998875 4677
Q ss_pred cchHHHHHHhhh-cccc---cccccccc----ccccccCc-------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 120 YDTLLENIRGLK-EGKA---VQVPIYDF----KSSSRIGY-------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 120 ~~tv~enL~~l~-~~~~---~~~p~~d~----~~~~~~~~-------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
..++.+|+.... .... .-.+.... .....+.. ....+ ..|+|+|++.+ ..+|.++++
T Consensus 351 ~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL-----~~~p~vLil 425 (500)
T COG1129 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWL-----ATDPKVLIL 425 (500)
T ss_pred CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHH-----hcCCCEEEE
Confidence 889999987651 1100 00000000 00001110 11112 23999999999 999999999
Q ss_pred eeeecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCc
Q 012357 182 VSVTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQT 232 (465)
Q Consensus 182 DEpts~LD~~l---~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~ 232 (465)
||||-|+|+-. +.++++++.++|.++ +..+-.+||||.+|++|++...-..
T Consensus 426 DEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 426 DEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred CCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecc
Confidence 99999999864 678889999999998 7788889999999999999764443
No 387
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.53 E-value=8e-15 Score=149.34 Aligned_cols=178 Identities=12% Similarity=0.118 Sum_probs=122.2
Q ss_pred eeeeEeeeCcE-EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc-------ccccc
Q 012357 40 EDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~-~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~-------~~ig~ 110 (465)
.+++.|.|... --+.-||++|++|| ++.|+|.||||||||++.|.|+. |++|.|.+||.++.. +-++-
T Consensus 325 lrnvrfay~~~~FhvgPiNl~ikrGe---lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSa 401 (546)
T COG4615 325 LRNVRFAYQDNAFHVGPINLTIKRGE---LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSA 401 (546)
T ss_pred eeeeeeccCcccceecceeeEEecCc---EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHH
Confidence 35667777543 45778999999999 99999999999999999999999 999999999998752 33556
Q ss_pred ccCCCCCCccch----------HHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceee
Q 012357 111 NFDDPRLTDYDT----------LLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 111 vfQ~p~l~~~~t----------v~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
+|.|..+|+..- +...+..+.-..+.....-.+...+. .....+|++..-|+ .-.-.+.+
T Consensus 402 vFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kL-----StGQkKRlAll~Al-----lEeR~Ilv 471 (546)
T COG4615 402 VFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKL-----STGQKKRLALLLAL-----LEERDILV 471 (546)
T ss_pred HhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCccccccc-----ccchHHHHHHHHHH-----HhhCCeEE
Confidence 777766654321 22222222211111111111111111 12234788888777 44567889
Q ss_pred eeeeecCccHHHHHH----HHHHHHHcCCCH-----HHHHHHHhceEEEccCcEEEecC
Q 012357 181 RVSVTGGVHFDLVKR----VFRDIQRVGQEP-----EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 181 lDEpts~LD~~l~rr----Ilrdl~e~G~TI-----~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
+||=-++-||...|. ++-++++.|+|| .+.--..+||...|.+|++.+..
T Consensus 472 ~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 472 LDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred eehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 999999999987664 446678889999 34444568999999999987643
No 388
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.52 E-value=2.5e-14 Score=139.13 Aligned_cols=167 Identities=16% Similarity=0.094 Sum_probs=98.8
Q ss_pred eCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc----------------C-CCee--------EEEECCe
Q 012357 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF----------------M-PSIA--------VITMDNY 101 (465)
Q Consensus 47 ~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl----------------l-P~sG--------~I~lDg~ 101 (465)
|+...++++++ ++ +++|+||||||||||+++|+++ + +++| .|.+++.
T Consensus 12 y~~~~~~~~~~-----~~---~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~ 83 (243)
T cd03272 12 YKDQTVIEPFS-----PK---HNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNS 83 (243)
T ss_pred cccCcccccCC-----CC---cEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcC
Confidence 45566666665 67 9999999999999999999843 3 4444 5555552
Q ss_pred e----cC------ccccccccCCCCCCcc-chHHHHHHhhhc-ccccccccc----c----c-ccccccCcccccc---c
Q 012357 102 N----DS------SRIIDGNFDDPRLTDY-DTLLENIRGLKE-GKAVQVPIY----D----F-KSSSRIGYRTLEV---P 157 (465)
Q Consensus 102 ~----~~------~~~ig~vfQ~p~l~~~-~tv~enL~~l~~-~~~~~~p~~----d----~-~~~~~~~~~~~~l---~ 157 (465)
+ .. ++.+++++|++.+++. .+..+....+.. +-....+.+ . . ............+ .
T Consensus 84 ~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~ 163 (243)
T cd03272 84 DNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQ 163 (243)
T ss_pred CCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHH
Confidence 1 11 3457888888777663 355444443322 111000000 0 0 0000000011112 2
Q ss_pred cchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH-----HHHHHHHhceEEEcc
Q 012357 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP-----EEIIHQISETVYPMY 222 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI-----~~vi~~i~d~V~~m~ 222 (465)
.||+.|++++.... ...|.+.++||||+++|+...+.+...+.+ ++.++ ...+..+||+++.+.
T Consensus 164 ~~r~~la~~l~~~~-~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 164 KSLVALALIFAIQK-CDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHHhc-cCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 49999999993210 014789999999999999987766655443 26555 334567899987763
No 389
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.51 E-value=6.2e-14 Score=138.95 Aligned_cols=174 Identities=17% Similarity=0.177 Sum_probs=110.3
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHH-----hcC------CC-----------eeEEEECCeecCcc
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL-----NFM------PS-----------IAVITMDNYNDSSR 106 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~-----gll------P~-----------sG~I~lDg~~~~~~ 106 (465)
..+.|++|++.++.|. +++|+|+||||||||++.+. ..+ |. .-.|.+|..++.+.
T Consensus 7 ~~~nl~~v~~~ip~g~---~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~ 83 (261)
T cd03271 7 RENNLKNIDVDIPLGV---LTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRT 83 (261)
T ss_pred chhcCCCceeeccCCc---EEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCC
Confidence 3567999999999999 99999999999999998662 111 11 12466666655321
Q ss_pred ---c---cccccCC---------------------------CCCCccchHHHHHHhhhcccccccc--c-ccccccc-cc
Q 012357 107 ---I---IDGNFDD---------------------------PRLTDYDTLLENIRGLKEGKAVQVP--I-YDFKSSS-RI 149 (465)
Q Consensus 107 ---~---ig~vfQ~---------------------------p~l~~~~tv~enL~~l~~~~~~~~p--~-~d~~~~~-~~ 149 (465)
. ...+||+ ...+..+|+.+++.++......... . ....... ..
T Consensus 84 ~rs~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l 163 (261)
T cd03271 84 PRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKL 163 (261)
T ss_pred CCCcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhh
Confidence 1 1223432 1223456777887765431111000 0 0000100 01
Q ss_pred Ccccccc---ccchhhhhHhHHhhhhcc---CcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHH
Q 012357 150 GYRTLEV---PSSRIVIIEGIYALSEKL---RPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQI 214 (465)
Q Consensus 150 ~~~~~~l---~~qRVlIaegl~aL~d~~---~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i 214 (465)
+.....+ ..||+.+++++ .. .|.+.++||||+++|+..... +++++.++|.|+ ++.+. .
T Consensus 164 ~~~~~~LSgGe~QRl~LAraL-----~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~ 237 (261)
T cd03271 164 GQPATTLSGGEAQRIKLAKEL-----SKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-C 237 (261)
T ss_pred cCccccCCHHHHHHHHHHHHH-----hcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h
Confidence 1111112 24999999999 44 379999999999999987554 456666678888 56664 6
Q ss_pred hceEEEc------cCcEEEecCC
Q 012357 215 SETVYPM------YKAFIEPDLQ 231 (465)
Q Consensus 215 ~d~V~~m------~~G~I~~~g~ 231 (465)
||+++.| .+|+|+.+|.
T Consensus 238 aD~ii~Lgp~~g~~~G~iv~~Gt 260 (261)
T cd03271 238 ADWIIDLGPEGGDGGGQVVASGT 260 (261)
T ss_pred CCEEEEecCCcCCCCCEEEEeCC
Confidence 9999999 8999988775
No 390
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.51 E-value=6.3e-15 Score=136.04 Aligned_cols=179 Identities=8% Similarity=0.047 Sum_probs=120.3
Q ss_pred eeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------ccccccccCCCCCCccchHHHHH
Q 012357 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENI 127 (465)
Q Consensus 55 ~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~-------~~~ig~vfQ~p~l~~~~tv~enL 127 (465)
..|..+..|+ ++-++||||||||||+..++|+.|.+|+|.++|.+.. .+.-+|..|+......+.|+..+
T Consensus 17 plS~qv~aGe---~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL 93 (248)
T COG4138 17 PLSGEVRAGE---ILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYL 93 (248)
T ss_pred ccccccccce---EEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhh
Confidence 4566778899 9999999999999999999999999999999999864 23445665554333334444444
Q ss_pred Hhhhcccccc----ccccccccccccCccccc---cccchhhhhHhHHhhhhc--cCcceeeeeeeecCccHH---HHHH
Q 012357 128 RGLKEGKAVQ----VPIYDFKSSSRIGYRTLE---VPSSRIVIIEGIYALSEK--LRPLIDLRVSVTGGVHFD---LVKR 195 (465)
Q Consensus 128 ~~l~~~~~~~----~p~~d~~~~~~~~~~~~~---l~~qRVlIaegl~aL~d~--~~p~LdllDEpts~LD~~---l~rr 195 (465)
......+.+. .-.-.....+.++..... .+-|||=++-..+-.++. +...++++|||.+++|+. ...+
T Consensus 94 ~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr 173 (248)
T COG4138 94 TLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR 173 (248)
T ss_pred hhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH
Confidence 3321110000 000000011111111111 223777777666556653 445799999999999997 3667
Q ss_pred HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 196 VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 196 Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
++..+...|.++ ..-.-+.+|+++.+..|++...|...++.
T Consensus 174 ll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 174 LLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred HHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 888888889998 55667789999999999999999877663
No 391
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.51 E-value=4e-14 Score=164.22 Aligned_cols=180 Identities=18% Similarity=0.202 Sum_probs=135.7
Q ss_pred eeeEeeeC---cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCC
Q 012357 41 DTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (465)
Q Consensus 41 ~~ls~~~g---~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~ 116 (465)
++.+|..+ ..+.|+||||++++|+ .+||+|+.|||||+|+.+|.|.+ ..+|.+.++|- ++|++|.|.
T Consensus 522 ~~~sfsW~~~~~~~tL~dIn~~i~~G~---lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------iaYv~Q~pW 592 (1381)
T KOG0054|consen 522 KNGSFSWDSESPEPTLKDINFEIKKGQ---LVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------VAYVPQQPW 592 (1381)
T ss_pred eeeeEecCCCCCcccccceeEEecCCC---EEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe------EEEeccccH
Confidence 45555543 3459999999999999 99999999999999999999999 78999999984 899999998
Q ss_pred CCccchHHHHHHhhhcccccc-------------ccccccccccccCcccccc---ccchhhhhHhHHhhhhccCcceee
Q 012357 117 LTDYDTLLENIRGLKEGKAVQ-------------VPIYDFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 117 l~~~~tv~enL~~l~~~~~~~-------------~p~~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
.++ .|++|||.+...-.+-. ...........+|.+-..+ .+|||.+|||+ --+.++.+
T Consensus 593 I~n-gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAV-----Y~~adIYL 666 (1381)
T KOG0054|consen 593 IQN-GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAV-----YQDADIYL 666 (1381)
T ss_pred hhC-CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHH-----hccCCEEE
Confidence 775 69999999864321100 0001111112222222222 34999999999 56889999
Q ss_pred eeeeecCccHHHHHHHHHHHHH---cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 181 RVSVTGGVHFDLVKRVFRDIQR---VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 181 lDEpts~LD~~l~rrIlrdl~e---~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+|-|.+++|...-+.+..+.-. +++|+ .+. -..+|.|++|++|+|.+.|.+.|+.
T Consensus 667 LDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~-L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 667 LDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQF-LPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred EcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhh-hhhCCEEEEecCCeEecccCHHHHH
Confidence 9999999999987777655442 36777 333 3458999999999999999999885
No 392
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.49 E-value=4.4e-14 Score=134.31 Aligned_cols=156 Identities=10% Similarity=0.055 Sum_probs=95.9
Q ss_pred eeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCe---------eEEEECCeecC----ccccccccCCCCCCc
Q 012357 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI---------AVITMDNYNDS----SRIIDGNFDDPRLTD 119 (465)
Q Consensus 54 ~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~s---------G~I~lDg~~~~----~~~ig~vfQ~p~l~~ 119 (465)
+++++++.+| +++|+||||||||||+++|++++ |.. |.+.++|.+.. .+.++++||+++.+.
T Consensus 14 ~~~~l~~~~g----~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG----LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC----cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce
Confidence 5667777764 79999999999999999999998 432 34666665432 357899999998762
Q ss_pred cchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHH
Q 012357 120 YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRD 199 (465)
Q Consensus 120 ~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrd 199 (465)
...-.+.+....... ...+.......+ ...||+.|++++.... ...|.+.++|||++++|+.....+...
T Consensus 90 ~~~~~~~~~~~l~~~----~~~~~~~~~LS~-----G~kqrl~la~~l~~~~-~~~~~illlDEP~~~LD~~~~~~l~~~ 159 (197)
T cd03278 90 SIISQGDVSEIIEAP----GKKVQRLSLLSG-----GEKALTALALLFAIFR-VRPSPFCVLDEVDAALDDANVERFARL 159 (197)
T ss_pred eEEehhhHHHHHhCC----CccccchhhcCH-----HHHHHHHHHHHHHHhc-cCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 110111122111110 000101111111 1248999999983210 124589999999999999976666544
Q ss_pred HHH--cCCCH------HHHHHHHhceEEEccCc
Q 012357 200 IQR--VGQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 200 l~e--~G~TI------~~vi~~i~d~V~~m~~G 224 (465)
+.+ ++.|+ ++.+ ++||+++.++..
T Consensus 160 l~~~~~~~tiIiitH~~~~~-~~~d~v~~~~~~ 191 (197)
T cd03278 160 LKEFSKETQFIVITHRKGTM-EAADRLYGVTMQ 191 (197)
T ss_pred HHHhccCCEEEEEECCHHHH-hhcceEEEEEec
Confidence 433 25565 4544 578988887653
No 393
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.48 E-value=8.7e-14 Score=158.72 Aligned_cols=178 Identities=16% Similarity=0.106 Sum_probs=128.5
Q ss_pred CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C--CeeEEEECCeecC----ccccccccCCCCCCcc
Q 012357 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (465)
Q Consensus 48 g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P--~sG~I~lDg~~~~----~~~ig~vfQ~p~l~~~ 120 (465)
+.+.+|+||+=-+.+|- +.+++|.||||||||+++|+|.. - -.|.|.++|++.. +|.+||+-|+....+.
T Consensus 802 ~~~qLL~~V~G~~kPG~---LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGV---LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCc---eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcc
Confidence 67889999999999999 99999999999999999999997 2 4899999999876 5789999999988899
Q ss_pred chHHHHHHhh---hcccccccc---ccccccccccCc------------ccccc-ccchhhhhHhHHhhhhccCc-ceee
Q 012357 121 DTLLENIRGL---KEGKAVQVP---IYDFKSSSRIGY------------RTLEV-PSSRIVIIEGIYALSEKLRP-LIDL 180 (465)
Q Consensus 121 ~tv~enL~~l---~~~~~~~~p---~~d~~~~~~~~~------------~~~~l-~~qRVlIaegl~aL~d~~~p-~Ldl 180 (465)
.||+|-|.+- +..+.+... .|-....+.++. .-++. ..+|+-|+==| .-+| .+++
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVEL-----vA~P~~ilF 953 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVEL-----VANPSSILF 953 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEE-----ecCCceeEE
Confidence 9999999873 222222111 111111111111 11111 12556665445 5678 8999
Q ss_pred eeeeecCccHHHH---HHHHHHHHHcCCCH--------HHHHHHHhceEEEccC-cEEEecCCcce
Q 012357 181 RVSVTGGVHFDLV---KRVFRDIQRVGQEP--------EEIIHQISETVYPMYK-AFIEPDLQTAH 234 (465)
Q Consensus 181 lDEpts~LD~~l~---rrIlrdl~e~G~TI--------~~vi~~i~d~V~~m~~-G~I~~~g~~aD 234 (465)
+||||+|||-+.. -+++|.+.+.|+|| .++.+++ |++..|.+ |+.+-.|+..+
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~F-D~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAF-DELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHH-hHHHHHhcCCeEEEecCccc
Confidence 9999999999964 46678888899999 4555554 77777755 67776665443
No 394
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.45 E-value=3.4e-14 Score=136.61 Aligned_cols=166 Identities=9% Similarity=0.043 Sum_probs=96.9
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCCc
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~ 119 (465)
+|+. .|+...+++++++ + ++||+|||||||||++++|.... ... .....+++++++|+..+++
T Consensus 9 ~nfk-~~~~~~~l~~~~~-----~---i~~ivGpNGaGKSTll~~i~~~~G~~~-------~~~~~~~i~~~~~~~~~~~ 72 (212)
T cd03274 9 ENFK-SYAGEQVIGPFHK-----S---FSAIVGPNGSGKSNVIDSMLFVFGFRA-------SKMRQKKLSDLIHNSAGHP 72 (212)
T ss_pred ECcc-cCCCCeeeccCCC-----C---eEEEECCCCCCHHHHHHHHHHHhccCH-------HHhhhhhHHHHhcCCCCCC
Confidence 3443 5667778888876 6 99999999999999999998443 111 0111245778887776666
Q ss_pred cchHHHHHHhhhcc----------cccccccc---ccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcc
Q 012357 120 YDTLLENIRGLKEG----------KAVQVPIY---DFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPL 177 (465)
Q Consensus 120 ~~tv~enL~~l~~~----------~~~~~p~~---d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~ 177 (465)
..++.+++..+... .....+.+ .....+..+. ....+ ..+|+.|++++...+ .-.|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~-~~~p~ 151 (212)
T cd03274 73 NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHH-YKPTP 151 (212)
T ss_pred CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcc-cCCCC
Confidence 65555544333210 00000000 0000000000 01111 248999999882100 01468
Q ss_pred eeeeeeeecCccHHHHHHHH---HHHHHcCCCH----HHHHHHHhceEEEccC
Q 012357 178 IDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP----EEIIHQISETVYPMYK 223 (465)
Q Consensus 178 LdllDEpts~LD~~l~rrIl---rdl~e~G~TI----~~vi~~i~d~V~~m~~ 223 (465)
++++||||+++|+.....+. +++.+.+.++ ...+..+||++++|+.
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99999999999998755554 4443333333 4556779999988864
No 395
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.43 E-value=7e-14 Score=132.03 Aligned_cols=156 Identities=18% Similarity=0.232 Sum_probs=112.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCcccc-----c-cccCCCCCCccchHHHHHHhhhcccccccccc
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRII-----D-GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~~~~i-----g-~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~ 141 (465)
+|||.|++|||||||++.|+..++....|++|+++...... + +.|++|..++...+.+.|..++.+.....+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 58999999999999999999998667889999998754221 2 47888999999999999999887665443333
Q ss_pred cccccccc-------------CccccccccchhhhhHhHHhhh-hccCcceeeeeeeecCccHHHHHHHHHHHHHc-CCC
Q 012357 142 DFKSSSRI-------------GYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQE 206 (465)
Q Consensus 142 d~~~~~~~-------------~~~~~~l~~qRVlIaegl~aL~-d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~-G~T 206 (465)
+....... .......++.+++|+||.++++ +.+++.+|++.+.+++.|.+..|++.|+.... |.-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~ 160 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF 160 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence 33221110 0112334668899999999988 58889999999999999888887777762221 111
Q ss_pred HHHHHHHHhceEEEccC
Q 012357 207 PEEIIHQISETVYPMYK 223 (465)
Q Consensus 207 I~~vi~~i~d~V~~m~~ 223 (465)
-.+...++.+.|+|||.
T Consensus 161 w~Dp~~yf~~~v~p~y~ 177 (187)
T cd02024 161 WPDPPGYFDGHVWPMYL 177 (187)
T ss_pred cCCCCcccccccchhHH
Confidence 13445566666777654
No 396
>PRK06696 uridine kinase; Validated
Probab=99.43 E-value=1.4e-13 Score=132.96 Aligned_cols=178 Identities=18% Similarity=0.251 Sum_probs=125.2
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhcCCC----eeEEEECCeecCcccc-ccccCCC-----CCCccchHHHHHHhhh-
Q 012357 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPS----IAVITMDNYNDSSRII-DGNFDDP-----RLTDYDTLLENIRGLK- 131 (465)
Q Consensus 63 Ge~~~IigIiGpSGSGKSTL~r~L~gllP~----sG~I~lDg~~~~~~~i-g~vfQ~p-----~l~~~~tv~enL~~l~- 131 (465)
+++|++|||.|++|||||||++.|+..++. .-.+++|+|+...... ...+.++ ..++...+.+.+..+.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~ 98 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG 98 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence 446889999999999999999999998832 2345699998763211 1112232 4566667777776643
Q ss_pred ccc--cccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHH
Q 012357 132 EGK--AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (465)
Q Consensus 132 ~~~--~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~ 209 (465)
.+. ....+.+++.............+...++|++|.+++.+..++.+|+.++.+++.+.+..|...|+...+|. ..+
T Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~-~~~ 177 (223)
T PRK06696 99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGS-YEE 177 (223)
T ss_pred CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCC-chH
Confidence 222 24445666655544322333345667999999998888888899999999999999888878888777775 445
Q ss_pred HHHHHhceEEEccCcEEEec--CCcceEEeeCCC
Q 012357 210 IIHQISETVYPMYKAFIEPD--LQTAHIKIINKF 241 (465)
Q Consensus 210 vi~~i~d~V~~m~~G~I~~~--g~~aDIiI~~~~ 241 (465)
....|.+++.+.++-++.+. ...||+++.|+.
T Consensus 178 ~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 178 AEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 66777778777777776444 788999997644
No 397
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.42 E-value=2.6e-13 Score=130.14 Aligned_cols=161 Identities=14% Similarity=0.078 Sum_probs=95.9
Q ss_pred eeeeeEEe-cCccceEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECC----ee--cCccccccccCCCCCC------
Q 012357 54 RACQLLAQ-KNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN----YN--DSSRIIDGNFDDPRLT------ 118 (465)
Q Consensus 54 ~~VsL~i~-~Ge~~~IigIiGpSGSGKSTL~r~L~gll--P~sG~I~lDg----~~--~~~~~ig~vfQ~p~l~------ 118 (465)
..++|... +|+ +++|+||||||||||+++|++.+ +..+....+. .. .....+++.||++...
T Consensus 18 ~~i~~~~~~~~~---~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNG---LFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERS 94 (213)
T ss_pred eEEeCCCCCccC---EEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEe
Confidence 34455433 588 99999999999999999999654 4333333321 11 1134578888876431
Q ss_pred ccchHHHHHHhh--hccccccccccccccccccCccccccccchhhhhHhHHhhhh------ccCcceeeeeeeecCccH
Q 012357 119 DYDTLLENIRGL--KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE------KLRPLIDLRVSVTGGVHF 190 (465)
Q Consensus 119 ~~~tv~enL~~l--~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d------~~~p~LdllDEpts~LD~ 190 (465)
...+..+..... ..+.. ....+.......+ ...||+.+++++.. .| ...|.+.++|||++++|+
T Consensus 95 ~gl~~~~~~~~~~l~~g~l--~~~l~~~~~~lS~-----G~~~r~~la~al~~-~p~~~~~~~~~~~~lllDEp~~~lD~ 166 (213)
T cd03279 95 RGLDYDQFTRIVLLPQGEF--DRFLARPVSTLSG-----GETFLASLSLALAL-SEVLQNRGGARLEALFIDEGFGTLDP 166 (213)
T ss_pred cCCCHHHHHHhhhhhhcch--HHHhcCCccccCH-----HHHHHHHHHHHHHh-HHHhhhccCCCCCEEEEeCCcccCCH
Confidence 111111111110 00000 0000000111111 12489999999932 11 236789999999999999
Q ss_pred HHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcE
Q 012357 191 DLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 191 ~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~ 225 (465)
.... +++++++++|.|+ ++.+..+|+++.++++|-
T Consensus 167 ~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 167 EALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 8655 4456666668787 678899999999998874
No 398
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.38 E-value=6.8e-14 Score=148.79 Aligned_cols=279 Identities=25% Similarity=0.425 Sum_probs=200.8
Q ss_pred cCccceEEEEEcCCCCcHHHHHHHHHhcC--------CCe-eEEEECCeec--C-----cccc-ccccCCCCCCccchHH
Q 012357 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM--------PSI-AVITMDNYND--S-----SRII-DGNFDDPRLTDYDTLL 124 (465)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll--------P~s-G~I~lDg~~~--~-----~~~i-g~vfQ~p~l~~~~tv~ 124 (465)
.+..|+++|+.|.++|||||.+..+...+ |.. -.++.|-++. + ..+. -|.|++|+.+++.++.
T Consensus 40 ~~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~ 119 (473)
T KOG4203|consen 40 EGKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLY 119 (473)
T ss_pred cCcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHH
Confidence 45668999999999999999665554433 111 1222222221 1 1223 3899999999999999
Q ss_pred HHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhh-ccCcceeeeeeeecCccHHHHHHHHHHHHHc
Q 012357 125 ENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV 203 (465)
Q Consensus 125 enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d-~~~p~LdllDEpts~LD~~l~rrIlrdl~e~ 203 (465)
..+..+.++..+..|.|++..+.+...+...+.+..+.|.+|+++++| +.+..++...+.++..|.+..+++.|++.++
T Consensus 120 ~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~ 199 (473)
T KOG4203|consen 120 LTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVER 199 (473)
T ss_pred HHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhh
Confidence 999999999999999999998887665666778888999999999995 7888899999999999999999999999999
Q ss_pred CCCHHHHHHHHhceEEEccCcEEEecCCcceEEeeCCCCCCCccCCccccccCCCcccHHHHHHHhcccccccccceeee
Q 012357 204 GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDI 283 (465)
Q Consensus 204 G~TI~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~~p~~~~~~p~~ilk~~~~~~~~~i~~~l~~~~~~~~~~~~~i 283 (465)
|+++..+..+|..++.+-+..+|.|+...+|++++...+ +-+ .......++.+-|...... ...-++
T Consensus 200 g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~------n~v-----ai~l~~~~i~~~L~~~~~~--~l~~~~ 266 (473)
T KOG4203|consen 200 GRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGD------NDV-----AIDLIVQHILSILAEKSYV--RLYNNV 266 (473)
T ss_pred cccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeecccc------ccc-----cceeeehhhhhhhhccccc--cccccc
Confidence 999999999999999999999999999999999975332 111 1122233334433221111 112244
Q ss_pred ccCCCCCCchhhhhhhhhcCC---------CceEEEEEeeecCCCCeE----eeeeeeeeeeeeEeccccccCcEEEEEE
Q 012357 284 YLLPPGEDPDACQSYLRMRNR---------DGKYNLMFEEWVTDSPFI----ISPRITFEVSVRLLGGLMALGYTIATIL 350 (465)
Q Consensus 284 ~~~p~~~~~~~~~~~i~~~~~---------~~~~~l~~~~~~~~~p~i----~~~~~~f~v~~~il~gl~~~g~~~~~~~ 350 (465)
+.+|++++..+..++++...+ +..+++.++.....-||. .+|. +...++-..+ .-+|++.+
T Consensus 267 ~~l~~t~~i~~~~t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~~~p~~~~~i~~~~-----~~~~~~~~~~-~~i~gv~i 340 (473)
T KOG4203|consen 267 LSLPDTNQIKGKLTLLRDHTTSRHPFSFYSDHLVRLVLEHGLGHLPYTEKRIVTPR-----GLAYSGVNFC-KQICGVSI 340 (473)
T ss_pred eecCCccccCCceeEeecCCcCCCCHHHHHHHHHHHHhhcccCcccceeeeEeccc-----ccchhccccc-chhccCCC
Confidence 567777766555555555443 344556667777777875 4444 3333333344 77888999
Q ss_pred Eeccceeec
Q 012357 351 KRSSHIFYD 359 (465)
Q Consensus 351 ~r~~~~~~~ 359 (465)
.|+|++++.
T Consensus 341 ~r~g~~~~~ 349 (473)
T KOG4203|consen 341 PRSGESMET 349 (473)
T ss_pred CcchhHHHH
Confidence 999998876
No 399
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.36 E-value=4.1e-13 Score=128.32 Aligned_cols=143 Identities=17% Similarity=0.141 Sum_probs=89.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH----hcC-CCeeEEEECCee----cCccccccccCCCC-----CCccchHHHHHHhhhcc
Q 012357 68 LVGVAGPSGAGKTVFTEKVL----NFM-PSIAVITMDNYN----DSSRIIDGNFDDPR-----LTDYDTLLENIRGLKEG 133 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~----gll-P~sG~I~lDg~~----~~~~~ig~vfQ~p~-----l~~~~tv~enL~~l~~~ 133 (465)
+++|+||||||||||+++|. |.. |+.|.+..+... .....+++.||++. .....++.+++.+...+
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~ 103 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG 103 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence 89999999999999999995 776 666655422211 12346888898873 22334777777553211
Q ss_pred ccccccccccccccccCccccccccch------hhhhHhHHhhhhccCcceeeeeeeecCccHHHHH-HH---HHHHHHc
Q 012357 134 KAVQVPIYDFKSSSRIGYRTLEVPSSR------IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVK-RV---FRDIQRV 203 (465)
Q Consensus 134 ~~~~~p~~d~~~~~~~~~~~~~l~~qR------VlIaegl~aL~d~~~p~LdllDEpts~LD~~l~r-rI---lrdl~e~ 203 (465)
. .. ...+.......++ ..++ +.+++++ ..+|.+.++|||++++|+.... ++ +++++++
T Consensus 104 ~-~~-~~~~~~~~~LS~G-----~~~~~~la~rlala~al-----~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~ 171 (204)
T cd03240 104 E-SN-WPLLDMRGRCSGG-----EKVLASLIIRLALAETF-----GSNCGILALDEPTTNLDEENIEESLAEIIEERKSQ 171 (204)
T ss_pred H-HH-HHHhcCccccCcc-----HHHHHHHHHHHHHHHHh-----ccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhc
Confidence 1 00 0001111111111 1243 5677888 8899999999999999997666 44 4555554
Q ss_pred -CCCH------HHHHHHHhceEEEccC
Q 012357 204 -GQEP------EEIIHQISETVYPMYK 223 (465)
Q Consensus 204 -G~TI------~~vi~~i~d~V~~m~~ 223 (465)
|.++ ++.+ ..||+++.+.+
T Consensus 172 ~~~~iiiitH~~~~~-~~~d~i~~l~~ 197 (204)
T cd03240 172 KNFQLIVITHDEELV-DAADHIYRVEK 197 (204)
T ss_pred cCCEEEEEEecHHHH-hhCCEEEEEee
Confidence 6666 4444 46888887754
No 400
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.35 E-value=1.5e-12 Score=140.59 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=114.5
Q ss_pred eeeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCC-CeeEEEECCeecCccccccccCCCC
Q 012357 39 IEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPR 116 (465)
Q Consensus 39 v~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP-~sG~I~lDg~~~~~~~ig~vfQ~p~ 116 (465)
-.+|++...+ +...+++.++.+++|+ -+-|.|+||||||||+|+|+|+-| .+|.|.+- ....+-|+||.|.
T Consensus 394 ~~~nl~l~~p~~~~ll~~l~~~v~~G~---~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P----~~~~~lflpQ~PY 466 (604)
T COG4178 394 TLENLSLRTPDGQTLLSELNFEVRPGE---RLLITGESGAGKTSLLRALAGLWPWGSGRISMP----ADSALLFLPQRPY 466 (604)
T ss_pred EEeeeeEECCCCCeeeccceeeeCCCC---EEEEECCCCCCHHHHHHHHhccCccCCCceecC----CCCceEEecCCCC
Confidence 4466666553 4689999999999999 999999999999999999999996 57888775 2334678999997
Q ss_pred CCccchHHHHHHhhhccccccc------------cccccccccccCc-cccc-cccchhhhhHhHHhhhhccCcceeeee
Q 012357 117 LTDYDTLLENIRGLKEGKAVQV------------PIYDFKSSSRIGY-RTLE-VPSSRIVIIEGIYALSEKLRPLIDLRV 182 (465)
Q Consensus 117 l~~~~tv~enL~~l~~~~~~~~------------p~~d~~~~~~~~~-~~~~-l~~qRVlIaegl~aL~d~~~p~LdllD 182 (465)
+... |+++.|.++........ +.+.....+...+ +.++ .+.||+..||-+ ..+|++.++|
T Consensus 467 ~p~G-tLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil-----L~kP~~v~LD 540 (604)
T COG4178 467 LPQG-TLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL-----LHKPKWVFLD 540 (604)
T ss_pred CCCc-cHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH-----HcCCCEEEEe
Confidence 6554 99999988754321111 0000001111111 1112 235999999999 8999999999
Q ss_pred eeecCccHHHHHHHHHHHHHc--CCCH
Q 012357 183 SVTGGVHFDLVKRVFRDIQRV--GQEP 207 (465)
Q Consensus 183 Epts~LD~~l~rrIlrdl~e~--G~TI 207 (465)
|.|+++|+....++.+-++++ +.|+
T Consensus 541 EATsALDe~~e~~l~q~l~~~lp~~tv 567 (604)
T COG4178 541 EATSALDEETEDRLYQLLKEELPDATV 567 (604)
T ss_pred cchhccChHHHHHHHHHHHhhCCCCEE
Confidence 999999999988888888874 6666
No 401
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.34 E-value=7.9e-12 Score=130.95 Aligned_cols=185 Identities=15% Similarity=0.231 Sum_probs=137.6
Q ss_pred eeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec-C--------ccccc
Q 012357 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-S--------SRIID 109 (465)
Q Consensus 41 ~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~-~--------~~~ig 109 (465)
++++..-. ...++++|||++..|| |+||+|-.|-|-+.|+..|+|+. |.+|.|.++|.+. . +..++
T Consensus 261 ~~L~v~~~~~~~~v~~vs~~Vr~GE---IvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~ 337 (501)
T COG3845 261 EDLSVKDRRGVTAVKDVSFEVRAGE---IVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLA 337 (501)
T ss_pred eeeEeecCCCCceeeeeeeEEecCc---EEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCc
Confidence 55655443 3689999999999999 99999999999999999999999 7889999999985 2 23578
Q ss_pred cccCCC---CCCccchHHHHHHhhhcccc-------ccc-----------cccccccccccCcccccc---ccchhhhhH
Q 012357 110 GNFDDP---RLTDYDTLLENIRGLKEGKA-------VQV-----------PIYDFKSSSRIGYRTLEV---PSSRIVIIE 165 (465)
Q Consensus 110 ~vfQ~p---~l~~~~tv~enL~~l~~~~~-------~~~-----------p~~d~~~~~~~~~~~~~l---~~qRVlIae 165 (465)
|+|++. .+...+++.+|+........ ... ..|+........ ....+ ..|+++++|
T Consensus 338 ~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~-~a~~LSGGNqQK~IlaR 416 (501)
T COG3845 338 YVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA-PARSLSGGNQQKLILAR 416 (501)
T ss_pred cCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc-chhhcCCcceehhhhhh
Confidence 999885 46677899999876432110 000 011111100000 01112 239999999
Q ss_pred hHHhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcce
Q 012357 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (465)
Q Consensus 166 gl~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aD 234 (465)
=+ ..+|.+++...||-|+|.-.+..+. .+.+++|..+ ++.+..+||++.+|++|++....+..+
T Consensus 417 El-----~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 417 EL-----ARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred hh-----ccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 99 9999999999999999998765554 4555668777 788999999999999999987766544
No 402
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.31 E-value=8.8e-12 Score=116.44 Aligned_cols=133 Identities=22% Similarity=0.291 Sum_probs=116.4
Q ss_pred cceeeeccCCCCCCchhhhhhhhhcCCCceEEEEEeeecCCCCeEeeeeeeeeee--eeEeccccccCcEEEEEEEeccc
Q 012357 278 EETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVS--VRLLGGLMALGYTIATILKRSSH 355 (465)
Q Consensus 278 ~~~~~i~~~p~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~p~i~~~~~~f~v~--~~il~gl~~~g~~~~~~~~r~~~ 355 (465)
....|+|+-+|+........|+|.|..++.+.++|.|+..+..+.+++..+++|+ -++...|.+|||..++.+.....
T Consensus 31 ~~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E~e~~v~d~~~~~~iL~~LG~~~~~~v~K~R~ 110 (174)
T TIGR00318 31 EFQHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKEIEFKIEDIENALQILKKLGFKKVYEVIKKRR 110 (174)
T ss_pred cceEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEEEEEEECCHHHHHHHHHHCCCeEEEEEEEEEE
Confidence 3456899999988877777899999988899999999988888888888888884 44545678899999999999999
Q ss_pred eeecCcEEEEehhhhhcCcceEEEeccch---------hHHHHHhhhhcCccCccchhHHHHHHH
Q 012357 356 IFYDDRVCVKTDWLEQLNRKYVQVQGRDR---------LYVKYVGEQLGLDGSYVPRTYIEQIQL 411 (465)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (465)
+|.-|.+.|++|++++|+ +|+.|.|... +.+.+.|.+|||++..+++||+|+++|
T Consensus 111 ~~~l~~~~i~lD~v~~lG-~FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ell~~ 174 (174)
T TIGR00318 111 IYQTNELNVSIDDVEGLG-FFLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLELLSL 174 (174)
T ss_pred EEEECCEEEEEEccCCCc-cEEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHHhhC
Confidence 999999999999999997 9999999865 478899999999999999999999864
No 403
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.29 E-value=5.9e-12 Score=132.82 Aligned_cols=187 Identities=13% Similarity=0.189 Sum_probs=116.2
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCcc-------ccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSR-------IIDGN 111 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~-------~ig~v 111 (465)
..++++.+.++.+++|+.|.+..|+ -+||+|+|||||||++++|.+-. |..-. +|-|...+. .+..+
T Consensus 78 ~~sls~s~~g~~l~kd~~~El~~g~---rygLiG~nG~Gkst~L~~i~~~e~P~p~~--~d~y~ls~e~~ps~~~av~~v 152 (614)
T KOG0927|consen 78 IESLSLSFHGVELIKDVTLELNRGR---RYGLIGPNGSGKSTFLRAIAGREVPIPEH--IDFYLLSREIEPSEKQAVQAV 152 (614)
T ss_pred eeeeeeccCCceeeeeeeEEecCCc---eEEEEcCCCCcHhHHHHHHhcCCCCCCcc--cchhhhcccCCCchHHHHHHH
Confidence 4667888889999999999999999 99999999999999999999998 63322 233332211 11111
Q ss_pred cCCCC--CCccchHHHHHHhhhcc-------------cccccccccccccc---ccCc-------ccccc---ccchhhh
Q 012357 112 FDDPR--LTDYDTLLENIRGLKEG-------------KAVQVPIYDFKSSS---RIGY-------RTLEV---PSSRIVI 163 (465)
Q Consensus 112 fQ~p~--l~~~~tv~enL~~l~~~-------------~~~~~p~~d~~~~~---~~~~-------~~~~l---~~qRVlI 163 (465)
++... .-...-..|.+...... .......++..... ..+. ....+ ...|+.+
T Consensus 153 ~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aL 232 (614)
T KOG0927|consen 153 VMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAAL 232 (614)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHH
Confidence 11000 00000001111110000 00000000000000 0000 01111 2379999
Q ss_pred hHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCC-CH------HHHHHHHhceEEEccCcE-EEecCCcceE
Q 012357 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ-EP------EEIIHQISETVYPMYKAF-IEPDLQTAHI 235 (465)
Q Consensus 164 aegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~-TI------~~vi~~i~d~V~~m~~G~-I~~~g~~aDI 235 (465)
|+++ ..+|.++++||||.+||+..+..+-..+.+... ++ .+.+..+|.+|+-+++++ +..+|+....
T Consensus 233 Ar~L-----f~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 233 ARAL-----FQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred HHHH-----hcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHH
Confidence 9999 889999999999999999988877777776544 44 789999999999999998 6677776655
Q ss_pred E
Q 012357 236 K 236 (465)
Q Consensus 236 i 236 (465)
+
T Consensus 308 ~ 308 (614)
T KOG0927|consen 308 V 308 (614)
T ss_pred h
Confidence 4
No 404
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.29 E-value=4e-12 Score=134.09 Aligned_cols=178 Identities=15% Similarity=0.197 Sum_probs=119.3
Q ss_pred eeeeeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCC
Q 012357 38 PIEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP 115 (465)
Q Consensus 38 ~v~~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p 115 (465)
-+..+++|.|.. ..+.++++|-+..++ -++++||||+|||||++.+.|.+ |..|.|+-.... ++++.-||.
T Consensus 390 i~~~nv~F~y~~~~~iy~~l~fgid~~s---rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~----~~~~y~Qh~ 462 (614)
T KOG0927|consen 390 IMVQNVSFGYSDNPMIYKKLNFGIDLDS---RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN----KLPRYNQHL 462 (614)
T ss_pred EEEeccccCCCCcchhhhhhhcccCccc---ceeEecCCCCchhhhHHHHhhccccccccccccccc----cchhhhhhh
Confidence 466889999964 378899999999999 99999999999999999999999 999988754322 233333332
Q ss_pred --CCCccchHHHHHHhhhcc-ccc-c----ccccccccc-cccCcccccc-ccchhhhhHhHHhhhhccCcceeeeeeee
Q 012357 116 --RLTDYDTLLENIRGLKEG-KAV-Q----VPIYDFKSS-SRIGYRTLEV-PSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (465)
Q Consensus 116 --~l~~~~tv~enL~~l~~~-~~~-~----~p~~d~~~~-~~~~~~~~~l-~~qRVlIaegl~aL~d~~~p~LdllDEpt 185 (465)
.+.-..+..+++..-... ... . ...|.+.-. +-.....++. ...||+.+... .-.|.++++||||
T Consensus 463 ~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~-----~kqP~lLlLDEPt 537 (614)
T KOG0927|consen 463 AEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLA-----VKQPHLLLLDEPT 537 (614)
T ss_pred HhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHH-----hcCCcEEEecCCC
Confidence 111123334443321111 000 0 001111100 1111112222 23788888888 7889999999999
Q ss_pred cCccHHHHHHHHHHHHHc-CCCH-----HHHHHHHhceEEEccCcEEE
Q 012357 186 GGVHFDLVKRVFRDIQRV-GQEP-----EEIIHQISETVYPMYKAFIE 227 (465)
Q Consensus 186 s~LD~~l~rrIlrdl~e~-G~TI-----~~vi~~i~d~V~~m~~G~I~ 227 (465)
.++|+..+..+-.-+++. |.-+ .-++.++++.+++..++.+.
T Consensus 538 nhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~ 585 (614)
T KOG0927|consen 538 NHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVT 585 (614)
T ss_pred cCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCcee
Confidence 999999999998888886 4222 66889999999998888764
No 405
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.26 E-value=3.7e-11 Score=137.20 Aligned_cols=72 Identities=13% Similarity=0.253 Sum_probs=59.8
Q ss_pred cchhhhhHhHHhhhhccCc---ceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEc----
Q 012357 158 SSRIVIIEGIYALSEKLRP---LIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPM---- 221 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~p---~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m---- 221 (465)
.||+.|++++ ...| .+.++|||+++||+.....+ ++.+.++|.|+ ++.+. .||+++.|
T Consensus 836 kQRl~LAraL-----~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lgp~~ 909 (943)
T PRK00349 836 AQRVKLAKEL-----SKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLGPEG 909 (943)
T ss_pred HHHHHHHHHH-----hcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEecCCc
Confidence 4999999999 6666 89999999999999876554 46666678887 56664 79999999
Q ss_pred --cCcEEEecCCcceE
Q 012357 222 --YKAFIEPDLQTAHI 235 (465)
Q Consensus 222 --~~G~I~~~g~~aDI 235 (465)
.+|+++..|...++
T Consensus 910 G~~~G~Iv~~Gt~~el 925 (943)
T PRK00349 910 GDGGGEIVATGTPEEV 925 (943)
T ss_pred CCCCCEEEEeCCHHHH
Confidence 79999999988776
No 406
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.25 E-value=3e-12 Score=125.76 Aligned_cols=153 Identities=12% Similarity=0.089 Sum_probs=90.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CC-eeEEEECCe-ec---------CccccccccCCCC---------CCccchHHHH
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNY-ND---------SSRIIDGNFDDPR---------LTDYDTLLEN 126 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-P~-sG~I~lDg~-~~---------~~~~ig~vfQ~p~---------l~~~~tv~en 126 (465)
+++|+||||||||||+++|++++ ++ .|.+...+. ++ ....++++||++. +.+..++.++
T Consensus 27 ~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~ 106 (251)
T cd03273 27 FNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQ 106 (251)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEEE
Confidence 89999999999999999999999 54 457777664 21 1236888999852 3345566655
Q ss_pred HHhhhcccc-cc-ccc-c-c-cccccccCc--------------------------ccccc---ccchhhhhHhHHhhhh
Q 012357 127 IRGLKEGKA-VQ-VPI-Y-D-FKSSSRIGY--------------------------RTLEV---PSSRIVIIEGIYALSE 172 (465)
Q Consensus 127 L~~l~~~~~-~~-~p~-~-d-~~~~~~~~~--------------------------~~~~l---~~qRVlIaegl~aL~d 172 (465)
+........ .. ... . + ....+.++. ....+ ..||+.|++++..+.
T Consensus 107 I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~- 185 (251)
T cd03273 107 IVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLL- 185 (251)
T ss_pred EEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhh-
Confidence 543211000 00 000 0 0 000011111 01111 238999999983211
Q ss_pred ccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH-----HHHHHHHhceEEEc
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP-----EEIIHQISETVYPM 221 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI-----~~vi~~i~d~V~~m 221 (465)
...|.+.++||||+++|+.....+.+.+.+ +|.++ ...+...||+++-+
T Consensus 186 ~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~ 241 (251)
T cd03273 186 FKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRT 241 (251)
T ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEE
Confidence 135689999999999999877666654443 46655 23334457777554
No 407
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=6.6e-12 Score=131.77 Aligned_cols=176 Identities=14% Similarity=0.106 Sum_probs=108.9
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc----CCCeeEEEECCee-c------Cccc
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF----MPSIAVITMDNYN-D------SSRI 107 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl----lP~sG~I~lDg~~-~------~~~~ 107 (465)
..++++..||.+.+|.+-++++..|. -+|++|+||+|||||+|+|+.- +|..-++.-|... + .-..
T Consensus 82 ~~~~fdLa~G~k~LL~~a~L~L~~Gr---RYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~ 158 (582)
T KOG0062|consen 82 HIDNFDLAYGGKILLNKANLTLSRGR---RYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTER 158 (582)
T ss_pred eeeeeeeeecchhhhcCCceeeeccc---ccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHH
Confidence 45689999999999999999999999 9999999999999999999972 1221122111110 0 0011
Q ss_pred cccccCCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecC
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGG 187 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~ 187 (465)
..++.++..+....+..+.....+.+-..............+| ...-|+.+|||+ ..+|.++++||||.-
T Consensus 159 ~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSG-----GWrMrlaLARAl-----f~~pDlLLLDEPTNh 228 (582)
T KOG0062|consen 159 LDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSG-----GWRMRLALARAL-----FAKPDLLLLDEPTNH 228 (582)
T ss_pred HHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCc-----chhhHHHHHHHH-----hcCCCEEeecCCccc
Confidence 2233333222221122211110111100000000000111111 123699999999 789999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEE
Q 012357 188 VHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIE 227 (465)
Q Consensus 188 LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~ 227 (465)
||+..+..+-.-+...+.|+ ...+..+|..|+..++.++.
T Consensus 229 LDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~ 274 (582)
T KOG0062|consen 229 LDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLD 274 (582)
T ss_pred chhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhh
Confidence 99999998888888777666 56777777777777665553
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.21 E-value=5.4e-11 Score=123.57 Aligned_cols=143 Identities=15% Similarity=0.182 Sum_probs=96.5
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCCccchHHHHHHhhhcccc--
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKA-- 135 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~-- 135 (465)
.+..|| |+|++||||-|||||++.|+|.+ |+.|. . ..-+++|-||.-..-...||.+.+........
T Consensus 363 ~i~~gE---vigilGpNgiGKTTFvk~LAG~ikPdeg~----~---~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~ 432 (591)
T COG1245 363 EIYDGE---VIGILGPNGIGKTTFVKLLAGVIKPDEGS----E---EDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGS 432 (591)
T ss_pred eeecce---EEEEECCCCcchHHHHHHHhccccCCCCC----C---ccceEeecceeecCCCCCcHHHHHHHhhhhhccc
Confidence 345678 99999999999999999999999 99886 1 12356777776544445678777765332110
Q ss_pred ------cccc-----ccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHH---HHHHHHHHH
Q 012357 136 ------VQVP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL---VKRVFRDIQ 201 (465)
Q Consensus 136 ------~~~p-----~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l---~rrIlrdl~ 201 (465)
+..| .++....+.++ ...|||+||-++ .-...+.++|||.+-||.+. ..+++|++.
T Consensus 433 s~~~~ei~~pl~l~~i~e~~v~~LSG-----GELQRvaIaa~L-----~reADlYllDEPSA~LDvEqR~~vakvIRR~~ 502 (591)
T COG1245 433 SYFKTEIVKPLNLEDLLERPVDELSG-----GELQRVAIAAAL-----SREADLYLLDEPSAYLDVEQRIIVAKVIRRFI 502 (591)
T ss_pred chhHHhhcCccchHHHHhcccccCCc-----hhHHHHHHHHHh-----ccccCEEEecCchhhccHHHHHHHHHHHHHHH
Confidence 0001 11222222222 134999999999 88999999999999999974 456777776
Q ss_pred Hc-CCCH------HHHHHHHhceEEEc
Q 012357 202 RV-GQEP------EEIIHQISETVYPM 221 (465)
Q Consensus 202 e~-G~TI------~~vi~~i~d~V~~m 221 (465)
+. +.|. .-.+..++|++++.
T Consensus 503 e~~~kta~vVdHDi~~~dyvsDr~ivF 529 (591)
T COG1245 503 ENNEKTALVVDHDIYMIDYVSDRLIVF 529 (591)
T ss_pred hhcCceEEEEecceehhhhhhceEEEE
Confidence 54 5554 34566677776554
No 409
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.19 E-value=3.7e-11 Score=137.60 Aligned_cols=205 Identities=16% Similarity=0.128 Sum_probs=151.5
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCC----CeeEEEECCeecC----ccccccccCCCCCCccc
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS----SRIIDGNFDDPRLTDYD 121 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP----~sG~I~lDg~~~~----~~~ig~vfQ~p~l~~~~ 121 (465)
..++++++.-+++|+ .+.++||.|||||||+++++|-++ ..|.|+.||++.. ++.++|+.|+...++.+
T Consensus 128 ~~il~~~sg~~~pg~---m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGE---MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCc---eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccccccee
Confidence 579999999999999 999999999999999999999872 4679999998753 46689999999999999
Q ss_pred hHHHHHHhhhccccc--c---cc--ccc--------------cccccccCcccc----ccccchhhhhHhHHhhhhccCc
Q 012357 122 TLLENIRGLKEGKAV--Q---VP--IYD--------------FKSSSRIGYRTL----EVPSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 122 tv~enL~~l~~~~~~--~---~p--~~d--------------~~~~~~~~~~~~----~l~~qRVlIaegl~aL~d~~~p 176 (465)
||++.+.+..+.+.. . .. .+. +-....+|.... .....||-++|.+ .-.+
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~-----v~~~ 279 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEML-----VGPA 279 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeee-----ecCc
Confidence 999999986542211 1 11 111 001111221111 1134899999999 8899
Q ss_pred ceeeeeeeecCccHHHHHHHHHHHH---H-cCCCH-------HHHHHHHhceEEEccCcEEEecCCcceEEeeCCCCCCC
Q 012357 177 LIDLRVSVTGGVHFDLVKRVFRDIQ---R-VGQEP-------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFT 245 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~rrIlrdl~---e-~G~TI-------~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~~p~~ 245 (465)
.+...||+|.|||..+.-++++.++ . .+.|. ...+-...|.|.+|++|+++..|+..+++ .
T Consensus 280 ~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~--------~ 351 (1391)
T KOG0065|consen 280 SILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL--------P 351 (1391)
T ss_pred ceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH--------H
Confidence 9999999999999998777664443 3 25555 34455677999999999999999998876 1
Q ss_pred ccCCccccccCCCcccHHHHHHHhcc
Q 012357 246 GFQNPTYILKSTRPVTVDEIKAVMSK 271 (465)
Q Consensus 246 ~~~~p~~ilk~~~~~~~~~i~~~l~~ 271 (465)
-|++ +......++-+.|++.++.++
T Consensus 352 yFe~-~Gf~cP~r~~~ADfLt~vts~ 376 (1391)
T KOG0065|consen 352 YFED-MGFKCPPRKGTADFLTEVTSK 376 (1391)
T ss_pred HHHh-cCccCCCccCHHHHHHHhhcC
Confidence 1333 222233788889999988873
No 410
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.16 E-value=2.3e-10 Score=108.43 Aligned_cols=181 Identities=14% Similarity=0.084 Sum_probs=117.0
Q ss_pred eeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc-------cc---c
Q 012357 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RI---I 108 (465)
Q Consensus 41 ~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~-------~~---i 108 (465)
.++.|.|. .-+++-|+|+.++.|. -..++|.||||||||+++|+|-- -..|.|.+.|.+..+ .. .
T Consensus 17 sgl~f~y~~~dP~~~Dfnldlp~gs---RcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YL 93 (291)
T KOG2355|consen 17 SGLQFKYKVSDPIFFDFNLDLPAGS---RCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYL 93 (291)
T ss_pred eccEEecccCCceEEEEeeccCCCc---eEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEe
Confidence 45667773 4589999999999999 88899999999999999999986 555899998874321 00 1
Q ss_pred ccccCCC-------CCCccchHHHHHHhhhccccc-----cccccc----cccccccCccccccccchhhhhHhHHhhhh
Q 012357 109 DGNFDDP-------RLTDYDTLLENIRGLKEGKAV-----QVPIYD----FKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (465)
Q Consensus 109 g~vfQ~p-------~l~~~~tv~enL~~l~~~~~~-----~~p~~d----~~~~~~~~~~~~~l~~qRVlIaegl~aL~d 172 (465)
|.-+-+. .+--..++.+.|... .+... .+...| +..+.-+. ....||-|+.|+
T Consensus 94 GgeW~~~~~~agevplq~D~sae~mifgV-~g~dp~Rre~LI~iLDIdl~WRmHkvSD-----GqrRRVQicMGL----- 162 (291)
T KOG2355|consen 94 GGEWSKTVGIAGEVPLQGDISAEHMIFGV-GGDDPERREKLIDILDIDLRWRMHKVSD-----GQRRRVQICMGL----- 162 (291)
T ss_pred cccccccccccccccccccccHHHHHhhc-cCCChhHhhhhhhheeccceEEEeeccc-----cchhhhHHHHhc-----
Confidence 1111110 011112333333321 11110 011111 11222111 234789999999
Q ss_pred ccCcceeeeeeeecCccHHHHHHHHHHHH----HcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQ----RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrIlrdl~----e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
...=.++++||+|.+||+-...+++.-++ ++|.|| -+-++.|..+++-+..|++.-..+..++
T Consensus 163 L~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 163 LKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred ccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchh
Confidence 44457899999999999987777665444 358888 5567889999999999999876655554
No 411
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.15 E-value=8.3e-11 Score=140.24 Aligned_cols=76 Identities=12% Similarity=0.251 Sum_probs=60.9
Q ss_pred cchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEcc------
Q 012357 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMY------ 222 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~------ 222 (465)
.||+.|++++.. ....|.++++||||++||+..+.++ +++++++|.|+ ++.+ .+||+++.|.
T Consensus 815 ~QRV~LAraL~~--~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~ 891 (1809)
T PRK00635 815 IQRLKLAYELLA--PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNL 891 (1809)
T ss_pred HHHHHHHHHHhh--cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCC
Confidence 499999999921 1158999999999999999876554 46666779888 6667 7999999996
Q ss_pred CcEEEecCCcceEE
Q 012357 223 KAFIEPDLQTAHIK 236 (465)
Q Consensus 223 ~G~I~~~g~~aDIi 236 (465)
+|+++.+|...++.
T Consensus 892 ~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 892 GGYLLASCSPEELI 905 (1809)
T ss_pred CCEEEEeCCHHHHH
Confidence 78999988887764
No 412
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.15 E-value=7.7e-11 Score=122.69 Aligned_cols=162 Identities=22% Similarity=0.308 Sum_probs=102.2
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC-CC---eeEEEECCeecCcc---ccc-cccCC--------CCCCccchHHHHH
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDSSR---IID-GNFDD--------PRLTDYDTLLENI 127 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll-P~---sG~I~lDg~~~~~~---~ig-~vfQ~--------p~l~~~~tv~enL 127 (465)
.+|++|||+|++|||||||++.|.+++ +. .|.|++||++++.. +.. -.+++ |..++.....+++
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e~L 289 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVETL 289 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHHHH
Confidence 368999999999999999999999998 54 89999999997521 111 11221 3445555555666
Q ss_pred Hhh----hccccccccccccccccccCcc------ccccccchhhhhHhHHhhhhccCc---------------------
Q 012357 128 RGL----KEGKAVQVPIYDFKSSSRIGYR------TLEVPSSRIVIIEGIYALSEKLRP--------------------- 176 (465)
Q Consensus 128 ~~l----~~~~~~~~p~~d~~~~~~~~~~------~~~l~~qRVlIaegl~aL~d~~~p--------------------- 176 (465)
..+ +.+..+..|.||+..+...+.. .....+..|+|.||.++......+
T Consensus 290 ~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~~Y~ 369 (460)
T PLN03046 290 EALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEAYY 369 (460)
T ss_pred HHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHHHHH
Confidence 555 4577889999999986533321 122356799999998887632111
Q ss_pred -----ceeeeeee-ecCccHHHHHHHHHHHH--HcCCC-H-HHHHHHHhceEEEccCcE
Q 012357 177 -----LIDLRVSV-TGGVHFDLVKRVFRDIQ--RVGQE-P-EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 177 -----~LdllDEp-ts~LD~~l~rrIlrdl~--e~G~T-I-~~vi~~i~d~V~~m~~G~ 225 (465)
.+|.+... ..+.+....||+.++.. ..|.. + .+.+.++.++.+|.|+-+
T Consensus 370 ~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~FV~~YmPaY~~y 428 (460)
T PLN03046 370 DAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVSRYLPAYKAY 428 (460)
T ss_pred HHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhhHHHHH
Confidence 12222211 12234445677775543 22322 2 556777888887766544
No 413
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.14 E-value=1.6e-10 Score=113.84 Aligned_cols=146 Identities=21% Similarity=0.365 Sum_probs=110.3
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcC---C---CeeEEEECCeecCcccc---cc--ccCCCCCCccchHHHHHHh
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDSSRII---DG--NFDDPRLTDYDTLLENIRG 129 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---P---~sG~I~lDg~~~~~~~i---g~--vfQ~p~l~~~~tv~enL~~ 129 (465)
.+++.|+||||+|+.|+||||+++.+..++ | ..-.|.|||++.....+ |. ---.|..||...+.+.+..
T Consensus 77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~ 156 (283)
T COG1072 77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSD 156 (283)
T ss_pred CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHH
Confidence 557779999999999999999999999886 3 36789999998653211 11 1124778898889999988
Q ss_pred hhcccc-ccccccccccccccCccccccccchhhhhHhHHhhhh-----ccCcceeeeeeeecCccHHHHHHHHHHHHHc
Q 012357 130 LKEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV 203 (465)
Q Consensus 130 l~~~~~-~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d-----~~~p~LdllDEpts~LD~~l~rrIlrdl~e~ 203 (465)
++++.. +..|.|++.....+.++....+..+++|+||+++|.+ .+.+.+|+.++++++.+.-. ++++.+...-
T Consensus 157 vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le-~wyi~Rfl~~ 235 (283)
T COG1072 157 VKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLE-ERYIERFLKF 235 (283)
T ss_pred HhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHH-HHHHHHHHhc
Confidence 886654 8899999999998887777788899999999999985 35678888888887755433 3344333333
Q ss_pred CCCH
Q 012357 204 GQEP 207 (465)
Q Consensus 204 G~TI 207 (465)
|.+.
T Consensus 236 g~~a 239 (283)
T COG1072 236 GLTA 239 (283)
T ss_pred ccch
Confidence 4444
No 414
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=3.2e-10 Score=129.40 Aligned_cols=75 Identities=15% Similarity=0.243 Sum_probs=58.5
Q ss_pred cchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEc------c
Q 012357 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPM------Y 222 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m------~ 222 (465)
.||+.|++++.. +..+|.+.++||||++||+....++ ++++.++|.|+ ++++. .||+++.| .
T Consensus 834 ~QRl~LA~aL~~--~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~Lgp~~G~~ 910 (924)
T TIGR00630 834 AQRIKLAKELSK--RSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYIIDLGPEGGDG 910 (924)
T ss_pred HHHHHHHHHHhh--cCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCccCC
Confidence 399999999921 1125899999999999999876554 46666678887 56664 69999999 7
Q ss_pred CcEEEecCCcceE
Q 012357 223 KAFIEPDLQTAHI 235 (465)
Q Consensus 223 ~G~I~~~g~~aDI 235 (465)
+|+++..|...++
T Consensus 911 gG~iv~~G~~~~l 923 (924)
T TIGR00630 911 GGTIVASGTPEEV 923 (924)
T ss_pred CCEEEEeCCHHHh
Confidence 9999998877654
No 415
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.11 E-value=3.7e-11 Score=114.54 Aligned_cols=123 Identities=11% Similarity=0.072 Sum_probs=78.4
Q ss_pred EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCccccccccCCCCCCccchHHHHHHhh
Q 012357 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGL 130 (465)
Q Consensus 51 ~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL~~l 130 (465)
.+++++++.. |+ +++|+||||||||||+|+|++... +..+|.+++.+ .++||...++...++.+++...
T Consensus 15 ~v~n~i~l~~--g~---~~~ltGpNg~GKSTllr~i~~~~~----l~~~G~~v~a~--~~~~q~~~l~~~~~~~d~l~~~ 83 (199)
T cd03283 15 RVANDIDMEK--KN---GILITGSNMSGKSTFLRTIGVNVI----LAQAGAPVCAS--SFELPPVKIFTSIRVSDDLRDG 83 (199)
T ss_pred eecceEEEcC--Cc---EEEEECCCCCChHHHHHHHHHHHH----HHHcCCEEecC--ccCcccceEEEeccchhccccc
Confidence 4566666554 68 999999999999999999998651 23355555433 4667766778888888888653
Q ss_pred hccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHH----HHHHHHHcCCC
Q 012357 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR----VFRDIQRVGQE 206 (465)
Q Consensus 131 ~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rr----Ilrdl~e~G~T 206 (465)
... +... ..++ +.++.......|.+.++|||++++|+..... +++.+.+.|.+
T Consensus 84 ~s~-------~~~e-------------~~~~---~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~t 140 (199)
T cd03283 84 ISY-------FYAE-------------LRRL---KEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTI 140 (199)
T ss_pred cCh-------HHHH-------------HHHH---HHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 211 0000 0010 1111100124799999999999999985443 45666666766
Q ss_pred H
Q 012357 207 P 207 (465)
Q Consensus 207 I 207 (465)
+
T Consensus 141 i 141 (199)
T cd03283 141 G 141 (199)
T ss_pred E
Confidence 6
No 416
>PLN02796 D-glycerate 3-kinase
Probab=99.10 E-value=1e-10 Score=119.60 Aligned_cols=120 Identities=19% Similarity=0.285 Sum_probs=84.8
Q ss_pred EEeeeeeEE---ecCc--cceEEEEEcCCCCcHHHHHHHHHhcC-C---CeeEEEECCeecCccc-cccccCCC------
Q 012357 52 VIRACQLLA---QKNH--GIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYNDSSRI-IDGNFDDP------ 115 (465)
Q Consensus 52 aL~~VsL~i---~~Ge--~~~IigIiGpSGSGKSTL~r~L~gll-P---~sG~I~lDg~~~~~~~-ig~vfQ~p------ 115 (465)
+++.+++.+ ++|+ +|+++||+|+||||||||++.|.+++ + ..|.|++||++++... .....|+|
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~ 160 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALLE 160 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhhh
Confidence 566777766 3443 48899999999999999999999999 4 3799999999876321 12223443
Q ss_pred -----CCCccchHHHHHHhhh----ccccccccccccccccccCccc------cccccchhhhhHhHHhhh
Q 012357 116 -----RLTDYDTLLENIRGLK----EGKAVQVPIYDFKSSSRIGYRT------LEVPSSRIVIIEGIYALS 171 (465)
Q Consensus 116 -----~l~~~~tv~enL~~l~----~~~~~~~p~~d~~~~~~~~~~~------~~l~~qRVlIaegl~aL~ 171 (465)
..++...+.+++..++ .+..+..|.||+..+...+... ....+..|+|.||.++-.
T Consensus 161 ~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~ 231 (347)
T PLN02796 161 LRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGF 231 (347)
T ss_pred cCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCC
Confidence 3445555677777766 4667889999999865443321 222567899999987755
No 417
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.09 E-value=1.7e-10 Score=99.46 Aligned_cols=69 Identities=17% Similarity=0.039 Sum_probs=57.7
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------ccccccccCCCCCCccch
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDT 122 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~-------~~~ig~vfQ~p~l~~~~t 122 (465)
.++|++++|.+++|+ +++|.||||||||||++++. .|.+.++|.+.. .+..++.+|+ .-+.+
T Consensus 2 ~~aL~~vsl~i~~ge---~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKV---GVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIR 70 (107)
T ss_pred ceEEEeeEEEEcCCE---EEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhh
Confidence 579999999999999 99999999999999999986 688999998653 2345677777 34578
Q ss_pred HHHHHHh
Q 012357 123 LLENIRG 129 (465)
Q Consensus 123 v~enL~~ 129 (465)
+++||..
T Consensus 71 i~~Ni~~ 77 (107)
T cd00820 71 LRLNIFL 77 (107)
T ss_pred HHhhcee
Confidence 9999977
No 418
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.08 E-value=2.4e-10 Score=108.60 Aligned_cols=144 Identities=12% Similarity=-0.009 Sum_probs=83.5
Q ss_pred EEeeeeeEEecC-ccceEEEEEcCCCCcHHHHHHHHH-hcC-CCee-EEEECCeecCccccccccCCCCCCccchHHHHH
Q 012357 52 VIRACQLLAQKN-HGIILVGVAGPSGAGKTVFTEKVL-NFM-PSIA-VITMDNYNDSSRIIDGNFDDPRLTDYDTLLENI 127 (465)
Q Consensus 52 aL~~VsL~i~~G-e~~~IigIiGpSGSGKSTL~r~L~-gll-P~sG-~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL 127 (465)
.+.++|+++.+| + +++|.||||||||||++.|+ +.+ +..| .+.... ...+++..|....+. ..+.+
T Consensus 16 ~~~~~~~~i~~~~~---~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~----~~~~~~~~~~~~~lg---~~~~l 85 (200)
T cd03280 16 KVVPLDIQLGENKR---VLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE----GSSLPVFENIFADIG---DEQSI 85 (200)
T ss_pred ceEcceEEECCCce---EEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc----cccCcCccEEEEecC---chhhh
Confidence 344678888888 5 89999999999999999998 221 2222 111110 001222222211010 00000
Q ss_pred HhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHH----HHHHHHHc
Q 012357 128 RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR----VFRDIQRV 203 (465)
Q Consensus 128 ~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rr----Ilrdl~e~ 203 (465)
.. ....... --.++..|++.+ ..|.+.++|||++++|+..... +++.+.+.
T Consensus 86 ~~--------------~~s~fs~-----g~~~~~~i~~~~------~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~ 140 (200)
T cd03280 86 EQ--------------SLSTFSS-----HMKNIARILQHA------DPDSLVLLDELGSGTDPVEGAALAIAILEELLER 140 (200)
T ss_pred hc--------------CcchHHH-----HHHHHHHHHHhC------CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 00 0000000 001344444443 4789999999999999986443 45666666
Q ss_pred CCCH-----HHHHHHHhceEEEccCcEEEecC
Q 012357 204 GQEP-----EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 204 G~TI-----~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
|.++ ...+..+||++..+.+|.+..++
T Consensus 141 ~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 141 GALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 7776 44567899999999999987653
No 419
>PRK07667 uridine kinase; Provisional
Probab=99.08 E-value=6.7e-11 Score=111.97 Aligned_cols=164 Identities=16% Similarity=0.295 Sum_probs=104.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC----CCeeEEEECCeecCcccc-ccccCCC-----CCCccchHHHHH-Hhhhcc
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDSSRII-DGNFDDP-----RLTDYDTLLENI-RGLKEG 133 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll----P~sG~I~lDg~~~~~~~i-g~vfQ~p-----~l~~~~tv~enL-~~l~~~ 133 (465)
.+++|||.|++||||||+++.|...+ .....+++|++...+... ...+.+. ..++...+.+.+ ..+..+
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 35799999999999999999999876 245689999986542111 0011111 112333344443 445556
Q ss_pred ccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHHHHH
Q 012357 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (465)
Q Consensus 134 ~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~vi~~ 213 (465)
..+..|.|++....... .....+...++|+||.+++....++.+|...+++++.+.+..|.+.| .|.+...
T Consensus 96 ~~i~~P~~d~~~~~~~~-~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r----~~~~~~~---- 166 (193)
T PRK07667 96 TKLTLPFYHDETDTCEM-KKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEE----TQKNLSK---- 166 (193)
T ss_pred CeEEEeeeccccccccc-cceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhcc----cHhHHHH----
Confidence 67788999887765433 22334567899999999877778889999999999987765444332 2444333
Q ss_pred HhceEEEccCcEEEe--cCCcceEEe
Q 012357 214 ISETVYPMYKAFIEP--DLQTAHIKI 237 (465)
Q Consensus 214 i~d~V~~m~~G~I~~--~g~~aDIiI 237 (465)
+-.+..+.++.++.. ....||+++
T Consensus 167 ~~~r~~~a~~~y~~~~~~~~~ad~i~ 192 (193)
T PRK07667 167 FKNRYWKAEDYYLETESPKDRADLVI 192 (193)
T ss_pred HHHHhHHHHHHHHhhcChHhhCcEEe
Confidence 333333445555443 255677764
No 420
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.07 E-value=5.9e-10 Score=118.67 Aligned_cols=173 Identities=16% Similarity=0.149 Sum_probs=119.1
Q ss_pred eeeEeeeC--cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCC-CeeEEEECCeecCccccccccCCCCC
Q 012357 41 DTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPRL 117 (465)
Q Consensus 41 ~~ls~~~g--~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP-~sG~I~lDg~~~~~~~ig~vfQ~p~l 117 (465)
+++++.-. +..+++++||.+++|. -+.|+||||||||+|+|.|+|+-| ..|.+..-...- .+.+-|+||-|..
T Consensus 437 e~v~l~tPt~g~~lie~Ls~~V~~g~---~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-~~~lfflPQrPYm 512 (659)
T KOG0060|consen 437 EEVSLSTPTNGDLLIENLSLEVPSGQ---NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-PKDLFFLPQRPYM 512 (659)
T ss_pred eeeeecCCCCCceeeeeeeeEecCCC---eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-CCceEEecCCCCc
Confidence 44555432 4678899999999999 999999999999999999999996 788887643221 1347789999865
Q ss_pred CccchHHHHHHhhhccccccccc---------ccc----ccccccCc-c---------ccc-cccchhhhhHhHHhhhhc
Q 012357 118 TDYDTLLENIRGLKEGKAVQVPI---------YDF----KSSSRIGY-R---------TLE-VPSSRIVIIEGIYALSEK 173 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~~~~~~p~---------~d~----~~~~~~~~-~---------~~~-l~~qRVlIaegl~aL~d~ 173 (465)
-. -|+++.+.++.......... .+. ...++.++ . .++ .+.||+..||=+ -
T Consensus 513 t~-GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf-----y 586 (659)
T KOG0060|consen 513 TL-GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF-----Y 586 (659)
T ss_pred cc-cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH-----h
Confidence 44 48888887763211110000 000 00111111 0 111 134999999999 7
Q ss_pred cCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH-----HHHHHHHhceEEEccC
Q 012357 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP-----EEIIHQISETVYPMYK 223 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI-----~~vi~~i~d~V~~m~~ 223 (465)
..|.+-++||.|++++......+-|..++.|.|. ...+..+-|.+.-|..
T Consensus 587 ~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 587 HKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred cCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 8999999999999999998888888888889887 3445556666665543
No 421
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2.4e-10 Score=117.99 Aligned_cols=146 Identities=13% Similarity=0.174 Sum_probs=99.5
Q ss_pred eeeeEeee-CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCC-
Q 012357 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR- 116 (465)
Q Consensus 40 ~~~ls~~~-g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~- 116 (465)
+++++|.| |..+.++.++|-|.-.. .|+|+||||.|||||++.|.|-+ |+.|+..-+. +-+||+.-|+.+
T Consensus 589 lH~VtFgy~gqkpLFkkldFGiDmdS---RiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh----rL~iG~FdQh~~E 661 (807)
T KOG0066|consen 589 LHDVTFGYPGQKPLFKKLDFGIDMDS---RIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH----RLRIGWFDQHANE 661 (807)
T ss_pred cccccccCCCCCchhhcccccccccc---eeEEECCCCccHHHHHHHHhcCCCCCcchhhccc----eeeeechhhhhHH
Confidence 47899999 67889999999999999 99999999999999999999999 9988765432 235676666542
Q ss_pred -CCccchHHHHHHhhhcc--cccc--cccccc-------ccccccCccccccccchhhhhHhHHhhhhccCcceeeeeee
Q 012357 117 -LTDYDTLLENIRGLKEG--KAVQ--VPIYDF-------KSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (465)
Q Consensus 117 -l~~~~tv~enL~~l~~~--~~~~--~p~~d~-------~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEp 184 (465)
+....|..+.+...-+- .... .-.+.. ...+.++ ...+||++++-. .-.|.++++|||
T Consensus 662 ~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSG-----GQKaRValaeLa-----l~~PDvlILDEP 731 (807)
T KOG0066|consen 662 ALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSG-----GQKARVALAELA-----LGGPDVLILDEP 731 (807)
T ss_pred hhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCC-----cchHHHHHHHHh-----cCCCCEEEecCC
Confidence 33334555555432110 0000 000111 1111112 123788888766 678999999999
Q ss_pred ecCccHHHHHHHHHHHHH
Q 012357 185 TGGVHFDLVKRVFRDIQR 202 (465)
Q Consensus 185 ts~LD~~l~rrIlrdl~e 202 (465)
|..||++.+..+-..+++
T Consensus 732 TNNLDIESIDALaEAIne 749 (807)
T KOG0066|consen 732 TNNLDIESIDALAEAINE 749 (807)
T ss_pred CCCcchhhHHHHHHHHHh
Confidence 999999887766655554
No 422
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.00 E-value=1.2e-09 Score=104.05 Aligned_cols=156 Identities=13% Similarity=-0.028 Sum_probs=83.3
Q ss_pred EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee--------cCccccccccCCCCCCccc-
Q 012357 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN--------DSSRIIDGNFDDPRLTDYD- 121 (465)
Q Consensus 52 aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~--------~~~~~ig~vfQ~p~l~~~~- 121 (465)
.++++++.+.+| +.+|+||||||||||+.+|...+ +... ....|.. .....+...|++...++..
T Consensus 11 ~~~~~~l~f~~g----l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~ 85 (198)
T cd03276 11 CHRHLQIEFGPR----VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPL 85 (198)
T ss_pred ceeeeEEecCCC----eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCCcC
Confidence 335566666654 78999999999999999998665 3211 1111110 0123466677765544411
Q ss_pred h-H-HHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHH-
Q 012357 122 T-L-LENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFR- 198 (465)
Q Consensus 122 t-v-~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlr- 198 (465)
. . .+.+..+.... ...+......++ ...+|+.|+.++.. ....+|.+.++|||++++|+.....+.+
T Consensus 86 ~~~~~~~~~~~l~~~----~~~~~~~~~lS~-----G~k~r~~ia~al~~-~~~~~p~illlDEP~~glD~~~~~~~~~~ 155 (198)
T cd03276 86 CVLSQDMARSFLTSN----KAAVRDVKTLSG-----GERSFSTVCLLLSL-WEVMESPFRCLDEFDVFMDMVNRKISTDL 155 (198)
T ss_pred CHHHHHHHHHHhccc----cccCCcccccCh-----hHHHHHHHHHHHHH-hcccCCCEEEecCcccccCHHHHHHHHHH
Confidence 0 0 11222221110 000111111111 12478888888821 1136899999999999999987655544
Q ss_pred --HHHHc--C-CCH------HHHHHHHhceEEEccC
Q 012357 199 --DIQRV--G-QEP------EEIIHQISETVYPMYK 223 (465)
Q Consensus 199 --dl~e~--G-~TI------~~vi~~i~d~V~~m~~ 223 (465)
++..+ | .|+ ++.+..+ |+|.+|..
T Consensus 156 l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~ 190 (198)
T cd03276 156 LVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRM 190 (198)
T ss_pred HHHHHhcCCCcEEEEEECCcccccccc-cceeEEEe
Confidence 33322 2 244 3444444 66666644
No 423
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.97 E-value=9.5e-10 Score=104.57 Aligned_cols=144 Identities=13% Similarity=0.044 Sum_probs=82.2
Q ss_pred eeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCeecCccccccccCCCCCCccchHHHHHHhhhccc
Q 012357 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGK 134 (465)
Q Consensus 57 sL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~ 134 (465)
++.+.+|+ +++|.||||||||||+++|++.. +..|.... -.+..+++..|.. ......+++..
T Consensus 23 ~~~l~~~~---~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~----~~~~~i~~~dqi~---~~~~~~d~i~~----- 87 (202)
T cd03243 23 DINLGSGR---LLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP----AESASIPLVDRIF---TRIGAEDSISD----- 87 (202)
T ss_pred eEEEcCCe---EEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc----ccccccCCcCEEE---EEecCcccccC-----
Confidence 34445688 99999999999999999999654 33332110 0112233322111 11111111000
Q ss_pred cccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHH----HHHHHHHHcCCCH---
Q 012357 135 AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVK----RVFRDIQRVGQEP--- 207 (465)
Q Consensus 135 ~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~r----rIlrdl~e~G~TI--- 207 (465)
.. .......+++..+-.. ...|.+.++|||++++|+.... .+++.+.++|.++
T Consensus 88 -------------~~--s~~~~e~~~l~~i~~~-----~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~ 147 (202)
T cd03243 88 -------------GR--STFMAELLELKEILSL-----ATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFA 147 (202)
T ss_pred -------------Cc--eeHHHHHHHHHHHHHh-----ccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 00 0111122343333333 5689999999999999997433 4456666667766
Q ss_pred --HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 208 --EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 208 --~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
...+...++++..+..+++.+.++..++
T Consensus 148 tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 148 THFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred CChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 3334456778888888888887765444
No 424
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.1e-09 Score=113.31 Aligned_cols=176 Identities=13% Similarity=0.124 Sum_probs=124.2
Q ss_pred eeeEeeeCcE--EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCC
Q 012357 41 DTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (465)
Q Consensus 41 ~~ls~~~g~~--~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l 117 (465)
..++|+|..- ..+.++++.++..+ -++++|+||+||||+++++.+-+ |..|.+...+ +.+++|-+|+.--
T Consensus 366 ~~V~f~y~p~~y~~~~~~~~d~e~~s---Ri~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~----r~ri~~f~Qhhvd 438 (582)
T KOG0062|consen 366 SYVAFEYTPSEYQWRKQLGLDRESDS---RISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP----RLRIKYFAQHHVD 438 (582)
T ss_pred EeeeccCCCcchhhhhccCCccchhh---hhheeccCchhHHHHHHHHhccCCcccceeeecc----cceecchhHhhhh
Confidence 4577888532 68999999999999 89999999999999999999988 9999988764 6689999998532
Q ss_pred Cccch--HHHHHHhhhccccccc---cccccccccccCccc-ccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCc
Q 012357 118 TDYDT--LLENIRGLKEGKAVQV---PIYDFKSSSRIGYRT-LEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGV 188 (465)
Q Consensus 118 ~~~~t--v~enL~~l~~~~~~~~---p~~d~~~~~~~~~~~-~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~L 188 (465)
+...+ ..+.++....|..-+. ..-++.......... ..+ ...||++|... -.+|.++++||||.-|
T Consensus 439 ~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~-----~~~PhlLVLDEPTNhL 513 (582)
T KOG0062|consen 439 FLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACT-----WNNPHLLVLDEPTNHL 513 (582)
T ss_pred HHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHh-----cCCCcEEEecCCCccc
Confidence 21111 1222222223321100 000111110010011 112 23688888888 8899999999999999
Q ss_pred cHHHHHHHHHHHHHc-CCCH-----HHHHHHHhceEEEccCcEEEe
Q 012357 189 HFDLVKRVFRDIQRV-GQEP-----EEIIHQISETVYPMYKAFIEP 228 (465)
Q Consensus 189 D~~l~rrIlrdl~e~-G~TI-----~~vi~~i~d~V~~m~~G~I~~ 228 (465)
|...+-.+-+.++.- |.-+ .+.+...|+.+|+..+|.+.+
T Consensus 514 D~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 514 DRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999998888875 4333 789999999999999999977
No 425
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.95 E-value=1.4e-09 Score=106.76 Aligned_cols=65 Identities=9% Similarity=0.014 Sum_probs=45.3
Q ss_pred cchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCc
Q 012357 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G 224 (465)
.+++.|++++..- ....|.+.++|||++++|+..... +++++.++|.++ .+. ..+||++++|+..
T Consensus 161 k~rl~la~al~~~-~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~-~~~~d~i~~~~~~ 234 (247)
T cd03275 161 KTMAALALLFAIH-SYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEF-FSKADALVGVYRD 234 (247)
T ss_pred HHHHHHHHHHHHh-ccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHH-HhhCCeEEEEEec
Confidence 4899999998210 012479999999999999986554 445555457676 444 4679999888653
No 426
>PRK06547 hypothetical protein; Provisional
Probab=98.89 E-value=1.8e-09 Score=100.75 Aligned_cols=123 Identities=22% Similarity=0.313 Sum_probs=84.3
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCccccccccCCCCCCccchHHHHHHhhhccccccccccc
Q 012357 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD 142 (465)
Q Consensus 63 Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d 142 (465)
+.++.+|+|.|++|||||||++.|+..+ ....+++|+++..+..+. .....+.+.+.. .+.....+ |+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~-~~~~~~~d~~~~~~~~~~--------~~~~~l~~~~l~--~g~~~~~~-yd 79 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART-GFQLVHLDDLYPGWHGLA--------AASEHVAEAVLD--EGRPGRWR-WD 79 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh-CCCeecccceecccccCC--------hHHHHHHHHHHh--CCCCceec-CC
Confidence 3457799999999999999999999876 455788888764322111 011223333332 34333444 66
Q ss_pred cccccccCccccccccchhhhhHhHHhhhhccCccee-----eeeeeecCccHHHHHHHHHH
Q 012357 143 FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID-----LRVSVTGGVHFDLVKRVFRD 199 (465)
Q Consensus 143 ~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~Ld-----llDEpts~LD~~l~rrIlrd 199 (465)
+....... ...+.+..++|++|.+++.++.++.++ +.++++++.|.+..|.+.|+
T Consensus 80 ~~~~~~~~--~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 80 WANNRPGD--WVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred CCCCCCCC--cEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcC
Confidence 66443322 223445678999999999888888888 99999999999888777776
No 427
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.87 E-value=9e-09 Score=106.23 Aligned_cols=148 Identities=23% Similarity=0.217 Sum_probs=97.8
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC---------CCeeEEEECCeecCccccccccCC--CCC
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---------PSIAVITMDNYNDSSRIIDGNFDD--PRL 117 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---------P~sG~I~lDg~~~~~~~ig~vfQ~--p~l 117 (465)
...+++|+||.+++|+ +++|+|+|||||||++++|.|.. |++|.|.+--.. .-.+++-. |.
T Consensus 395 eryvlr~vNL~ikpGd---vvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt----~~a~iPge~Ep~- 466 (593)
T COG2401 395 ERYVLRNLNLEIKPGD---VVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT----VSALIPGEYEPE- 466 (593)
T ss_pred eeeeeeceeeEecCCC---eEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc----hhhccCcccccc-
Confidence 4579999999999999 99999999999999999999973 567777653211 11233322 22
Q ss_pred CccchHHHHHHhhhccc--cc---------cccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeec
Q 012357 118 TDYDTLLENIRGLKEGK--AV---------QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~~--~~---------~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts 186 (465)
|...|+.+++..-...- .+ ..-.|-....+.+. ....|+-||..+ +.+|.+.+.||..+
T Consensus 467 f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELSt-----GQKeR~KLAkll-----aerpn~~~iDEF~A 536 (593)
T COG2401 467 FGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELST-----GQKERAKLAKLL-----AERPNVLLIDEFAA 536 (593)
T ss_pred cCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCc-----chHHHHHHHHHH-----hcCCCcEEhhhhhh
Confidence 33556666654321110 00 00011111122222 233688889888 99999999999999
Q ss_pred CccHHHHHHHHHHHHH----cCCCH------HHHHHHH
Q 012357 187 GVHFDLVKRVFRDIQR----VGQEP------EEIIHQI 214 (465)
Q Consensus 187 ~LD~~l~rrIlrdl~e----~G~TI------~~vi~~i 214 (465)
-||+.++.++.|++.+ .|.|+ .++..++
T Consensus 537 hLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL 574 (593)
T COG2401 537 HLDELTAVRVARKISELAREAGITLIVVTHRPEVGNAL 574 (593)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhcc
Confidence 9999999999988764 26665 5555555
No 428
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.82 E-value=8.8e-09 Score=99.43 Aligned_cols=149 Identities=9% Similarity=0.053 Sum_probs=92.7
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCeecC--ccccccccCCCCCCccchHHH
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDS--SRIIDGNFDDPRLTDYDTLLE 125 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--P~sG~I~lDg~~~~--~~~ig~vfQ~p~l~~~~tv~e 125 (465)
..+.+++++...+ + +++|.||||||||||++.++++. ... |.+.+ +..+++..+ .+...++.+
T Consensus 18 ~~v~n~~~l~~~~-~---~~~l~Gpn~sGKstllr~i~~~~~l~~~------g~~vp~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-Q---ILLITGPNMAGKSTYLRQVALIALLAQI------GSFVPASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-e---EEEEECCCCCChHHHHHHHHHHHHHhcc------CCeeccccceecceee---EeccCCchh
Confidence 3477788888776 7 99999999999999999998765 222 22222 234554432 344455555
Q ss_pred HHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeee---ecCccHHH-HHHHHHHHH
Q 012357 126 NIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV---TGGVHFDL-VKRVFRDIQ 201 (465)
Q Consensus 126 nL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEp---ts~LD~~l-~rrIlrdl~ 201 (465)
++..... .+ .....-+...+ ....+|.+.++||| |+++|... .+.+++.+.
T Consensus 85 ~ls~g~s-------~f---------------~~e~~~l~~~l---~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~ 139 (216)
T cd03284 85 DLAGGRS-------TF---------------MVEMVETANIL---NNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLH 139 (216)
T ss_pred hhccCcc-------hH---------------HHHHHHHHHHH---HhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH
Confidence 5543210 00 00011122222 11457899999999 98899865 466777777
Q ss_pred Hc-CCCH-----HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 202 RV-GQEP-----EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 202 e~-G~TI-----~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+. +.++ ...+..+++++..+.++++.......++.
T Consensus 140 ~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 140 EKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred hccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 76 7666 33456678887777778777666555554
No 429
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.80 E-value=1.7e-09 Score=114.03 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=100.0
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCC-CeeEEEECCeecCccccccccCCCCCCccchHHHHH
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENI 127 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP-~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL 127 (465)
...++..++|.+++|- -+.|+||||||||+|.|+|.|+.| ..|.+++- .+..+-|+||-|..- .-|+++.|
T Consensus 494 ~~vvv~~Ltf~i~~G~---hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P----~~~~mFYIPQRPYms-~gtlRDQI 565 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGM---HLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP----RPNNIFYIPQRPYMS-GGTLRDQI 565 (728)
T ss_pred cceeecceeEEecCCc---eEEEECCCCccHHHHHHHHhccCcccCCeeecC----CCcceEeccCCCccC-cCccccee
Confidence 4568899999999999 999999999999999999999997 45555442 244588899988643 45666665
Q ss_pred Hhhhcccccc---cccccc----------ccccccC-c------cc-c-ccccchhhhhHhHHhhhhccCcceeeeeeee
Q 012357 128 RGLKEGKAVQ---VPIYDF----------KSSSRIG-Y------RT-L-EVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (465)
Q Consensus 128 ~~l~~~~~~~---~p~~d~----------~~~~~~~-~------~~-~-~l~~qRVlIaegl~aL~d~~~p~LdllDEpt 185 (465)
-++-...... .+..|. ...++.+ + +. + ....||+.+||-+ -.+|..-++||.|
T Consensus 566 IYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~-----yHrPkyalLDEcT 640 (728)
T KOG0064|consen 566 IYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMF-----YHRPKYALLDECT 640 (728)
T ss_pred ecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHH-----hcCcchhhhhhhh
Confidence 5432111000 000000 0001111 1 11 1 1235999999999 8999999999999
Q ss_pred cCccHHHHHHHHHHHHHcCCCH
Q 012357 186 GGVHFDLVKRVFRDIQRVGQEP 207 (465)
Q Consensus 186 s~LD~~l~rrIlrdl~e~G~TI 207 (465)
+++.+...-++....+..|.+.
T Consensus 641 sAvsidvE~~i~~~ak~~gi~l 662 (728)
T KOG0064|consen 641 SAVSIDVEGKIFQAAKDAGISL 662 (728)
T ss_pred cccccchHHHHHHHHHhcCceE
Confidence 9999988777777777778776
No 430
>PRK08233 hypothetical protein; Provisional
Probab=98.76 E-value=1.5e-08 Score=93.61 Aligned_cols=150 Identities=19% Similarity=0.311 Sum_probs=87.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCcc--ccccccCCCCCC---ccchHHHHHHhhhccccccccc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR--IIDGNFDDPRLT---DYDTLLENIRGLKEGKAVQVPI 140 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~~~--~ig~vfQ~p~l~---~~~tv~enL~~l~~~~~~~~p~ 140 (465)
+.+|+|.|++|||||||++.|+..++....+++|+++.... .+.-...+...+ +...+.+.+..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 75 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAK------- 75 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcC-------
Confidence 35999999999999999999999987667888998864211 111011111111 111111111111110
Q ss_pred cccccccccCccccccccchhhhhHhHHhh-hhccCcceeeeeeeecCccHHHHHHHHHHHHHc-CCCHHHHHHHHhceE
Q 012357 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQISETV 218 (465)
Q Consensus 141 ~d~~~~~~~~~~~~~l~~qRVlIaegl~aL-~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~-G~TI~~vi~~i~d~V 218 (465)
....++|+++.+.. ++..++.+|+..+.+.+.+....|++.|+..+. +..+...+..|..++
T Consensus 76 ----------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 139 (182)
T PRK08233 76 ----------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYA 139 (182)
T ss_pred ----------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 01145566665443 345666788999999887777666666765432 223445566666666
Q ss_pred EEccCcEEEecCCcceEEee
Q 012357 219 YPMYKAFIEPDLQTAHIKII 238 (465)
Q Consensus 219 ~~m~~G~I~~~g~~aDIiI~ 238 (465)
.+.+...+.+....+++++.
T Consensus 140 ~~~y~~~~~~~~~~~~~vId 159 (182)
T PRK08233 140 RPLYLEALHTVKPNADIVLD 159 (182)
T ss_pred HHHHHHHhhcCccCCeEEEc
Confidence 66666555554556777764
No 431
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.75 E-value=3.8e-09 Score=111.73 Aligned_cols=62 Identities=21% Similarity=0.145 Sum_probs=50.5
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCee-EEEECCeecCc------cccccccCCCC
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYNDSS------RIIDGNFDDPR 116 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG-~I~lDg~~~~~------~~ig~vfQ~p~ 116 (465)
..||++||+++++|+ +++|+||||||||||++ +++. |++| .|.+||.+... ..+.++||+++
T Consensus 19 ~~vL~~Vsl~i~~GE---iv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~fn 88 (504)
T TIGR03238 19 ERILVKFNKELPSSS---LLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLDEIFDGFN 88 (504)
T ss_pred HHHHhCCceeecCCC---EEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHhhh
Confidence 358999999999999 99999999999999999 5666 7777 89999998642 12336777653
No 432
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.75 E-value=2.6e-08 Score=99.46 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=34.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS 104 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~ 104 (465)
.++|+||||||||||++.|++++ |++|.|.++|.++.
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG 150 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence 78999999999999999999999 99999999998763
No 433
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.72 E-value=6.8e-08 Score=93.09 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=25.6
Q ss_pred eeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 54 ~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+++.+.+.+ . +..|+|+||||||||+.+|...+
T Consensus 15 ~~~~i~~~~-g---~n~i~G~NgsGKS~lleAi~~~l 47 (213)
T cd03277 15 DETEFRPGP-S---LNMIIGPNGSGKSSIVCAICLGL 47 (213)
T ss_pred ceeEEecCC-C---eEEEECCCCCCHHHHHHHHHHHh
Confidence 344444443 3 78999999999999999998776
No 434
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.67 E-value=6.1e-08 Score=92.90 Aligned_cols=124 Identities=10% Similarity=0.047 Sum_probs=73.5
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCeecCccccccccCCCCCCccchHHHH
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~en 126 (465)
...+.+++++...+|+ +++|.|||||||||++++++++. ...| .. + |......++.++
T Consensus 15 ~~~v~~~~~~~~~~~~---~~~l~G~n~~GKstll~~i~~~~~la~~G------~~--------v---pa~~~~l~~~d~ 74 (204)
T cd03282 15 KNFIPNDIYLTRGSSR---FHIITGPNMSGKSTYLKQIALLAIMAQIG------CF--------V---PAEYATLPIFNR 74 (204)
T ss_pred CcEEEeeeEEeeCCCc---EEEEECCCCCCHHHHHHHHHHHHHHHHcC------CC--------c---chhhcCccChhh
Confidence 4568899999999999 99999999999999999998875 1121 11 1 222223344444
Q ss_pred HHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHH----HHHHHHHHHH
Q 012357 127 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL----VKRVFRDIQR 202 (465)
Q Consensus 127 L~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l----~rrIlrdl~e 202 (465)
|........ ...+.. .......+++..+-.. ..++.+.++|||+.|+|+.. .+.+++.+.+
T Consensus 75 I~~~~~~~d--------~~~~~~--S~fs~e~~~~~~il~~-----~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~ 139 (204)
T cd03282 75 LLSRLSNDD--------SMERNL--STFASEMSETAYILDY-----ADGDSLVLIDELGRGTSSADGFAISLAILECLIK 139 (204)
T ss_pred eeEecCCcc--------ccchhh--hHHHHHHHHHHHHHHh-----cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh
Confidence 432111000 000000 0111111233222223 56789999999999998864 3456677777
Q ss_pred cCCCH
Q 012357 203 VGQEP 207 (465)
Q Consensus 203 ~G~TI 207 (465)
.|.++
T Consensus 140 ~~~~~ 144 (204)
T cd03282 140 KESTV 144 (204)
T ss_pred cCCEE
Confidence 77766
No 435
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.67 E-value=4.3e-08 Score=95.10 Aligned_cols=147 Identities=9% Similarity=-0.029 Sum_probs=87.1
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCeecCccccccccCCCCCCccchHHHH
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~en 126 (465)
...+.+++++...+++ +++|.|||||||||+++.++-.. ...|. ++|.+...++ ..+.
T Consensus 16 ~~~v~~~~~~~~~~~~---~~~l~G~n~~GKstll~~i~~~~~la~~g~--------------~vpa~~~~~~---~~~~ 75 (222)
T cd03285 16 VAFIPNDVTLTRGKSR---FLIITGPNMGGKSTYIRQIGVIVLMAQIGC--------------FVPCDSADIP---IVDC 75 (222)
T ss_pred CCeEEeeEEEeecCCe---EEEEECCCCCChHHHHHHHHHHHHHHHhCC--------------CcCcccEEEe---ccce
Confidence 3457888999988899 99999999999999999987442 11220 2222211110 0000
Q ss_pred HHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeee---ecCccHHHHHH-HHHHHHH
Q 012357 127 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV---TGGVHFDLVKR-VFRDIQR 202 (465)
Q Consensus 127 L~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEp---ts~LD~~l~rr-Ilrdl~e 202 (465)
+.. .+ ...+...........++.-++..+-. ...|.+.++||| |+++|+..+.. +++.+.+
T Consensus 76 il~----------~~--~l~d~~~~~lS~~~~e~~~~a~il~~---~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~ 140 (222)
T cd03285 76 ILA----------RV--GASDSQLKGVSTFMAEMLETAAILKS---ATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT 140 (222)
T ss_pred eEe----------ee--ccccchhcCcChHHHHHHHHHHHHHh---CCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh
Confidence 000 00 00000000011122344444444422 246899999999 99999986544 4466665
Q ss_pred c-CCCH-----HHHHHHHhceEEEccCcEEEecC
Q 012357 203 V-GQEP-----EEIIHQISETVYPMYKAFIEPDL 230 (465)
Q Consensus 203 ~-G~TI-----~~vi~~i~d~V~~m~~G~I~~~g 230 (465)
+ |.++ ...+..+||++..+.+|++....
T Consensus 141 ~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 141 QIKCFCLFATHFHELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEE
Confidence 3 6665 56678899999989889886554
No 436
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.67 E-value=2.6e-08 Score=103.92 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=52.7
Q ss_pred cchhhhhHhHHhhhhccCcceeeeeeeecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEccC
Q 012357 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMYK 223 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l---~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~ 223 (465)
.||++||.++ .-...+.+.|||++-||+.. ..+++|++.+.++++ +.++..++|.|-++|.
T Consensus 219 LQr~aIaa~l-----~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 219 LQRVAIAAAL-----LRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHHHHH-----hccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 3999999999 88899999999999999984 567889998878777 7888889998877764
No 437
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.61 E-value=7.7e-08 Score=90.19 Aligned_cols=64 Identities=8% Similarity=0.025 Sum_probs=44.3
Q ss_pred cchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccC
Q 012357 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYK 223 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m~~ 223 (465)
.+++.+++++... ....|.+.++|||++++|+.....+ ++++.+.|.++ .+.+ ..+|+++.+++
T Consensus 100 ~~r~~Laral~~~-~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~-~~adrvi~i~~ 172 (178)
T cd03239 100 KSLSALALIFALQ-EIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF-ENADKLIGVLF 172 (178)
T ss_pred HHHHHHHHHHHHh-cCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-hhCCeEEEEEE
Confidence 4789999888211 1257899999999999999865544 45554556666 4444 46888877764
No 438
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.56 E-value=1.8e-07 Score=112.33 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=59.2
Q ss_pred chhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccC------
Q 012357 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYK------ 223 (465)
Q Consensus 159 qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~------ 223 (465)
||+-+|.-+.. ....+.+.++||||+|||+..+.+++ +++.+.|.|+ .+++.+ ||.++-|-.
T Consensus 1706 qRikLa~~l~~--~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~-aD~iidlgp~gG~~G 1782 (1809)
T PRK00635 1706 IAIKIAKFLYL--PPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQ-ADYLIEMGPGSGKTG 1782 (1809)
T ss_pred HHHHHHHHHhc--CCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh-CCEEEEcCCCcccCC
Confidence 99999887721 11236899999999999999877665 6678889999 677776 999988743
Q ss_pred cEEEecCCcceEE
Q 012357 224 AFIEPDLQTAHIK 236 (465)
Q Consensus 224 G~I~~~g~~aDIi 236 (465)
|+|+.+|.+.++.
T Consensus 1783 G~iva~Gtp~~i~ 1795 (1809)
T PRK00635 1783 GKILFSGPPKDIS 1795 (1809)
T ss_pred CEEEEEeCHHHHh
Confidence 7899999988875
No 439
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=7.6e-07 Score=88.91 Aligned_cols=65 Identities=9% Similarity=0.107 Sum_probs=45.2
Q ss_pred cchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCc
Q 012357 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G 224 (465)
.||+.++.++.... ...|.+.++|||++++|+.....+.+.+.+ ++.++ .. +..+||+++.+.++
T Consensus 176 ~~r~~la~~~~~~~-~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~-~~~~~d~~~~l~~~ 248 (276)
T cd03241 176 LSRLMLALKAILAR-KDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQ-VAAMADNHFLVEKE 248 (276)
T ss_pred HHHHHHHHHHHHhc-CCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHH-HHHhcCcEEEEEEe
Confidence 37888887662110 128999999999999999987766554443 25555 44 34688888887765
No 440
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=5.5e-08 Score=100.87 Aligned_cols=180 Identities=12% Similarity=0.116 Sum_probs=100.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC---CCeeEEEECCeecCc-----------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDSS----------- 105 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---P~sG~I~lDg~~~~~----------- 105 (465)
.++++.+-.+...+.+.||.|-.|. .+|++||||-|||||++.|+..- |..-.+.++.+.+..
T Consensus 267 iEnF~ISA~Gk~LFvnA~L~Iv~GR---RYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~ 343 (807)
T KOG0066|consen 267 IENFDISAQGKLLFVNASLTIVYGR---RYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK 343 (807)
T ss_pred eeeeeeecccceeeeccceEEEecc---eecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence 3566777677888999999999999 99999999999999999998752 544444444433210
Q ss_pred ---cccccccCCCCC-----CccchHHHHHH----hhhccccccccc----------cccccccccCccccccccchhhh
Q 012357 106 ---RIIDGNFDDPRL-----TDYDTLLENIR----GLKEGKAVQVPI----------YDFKSSSRIGYRTLEVPSSRIVI 163 (465)
Q Consensus 106 ---~~ig~vfQ~p~l-----~~~~tv~enL~----~l~~~~~~~~p~----------~d~~~~~~~~~~~~~l~~qRVlI 163 (465)
++..+.-....+ -...|+.+.+. .++......... |+....++-..+......-||.+
T Consensus 344 aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSL 423 (807)
T KOG0066|consen 344 ADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSL 423 (807)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhH
Confidence 011110000000 00112222211 121100000000 11111111000000112379999
Q ss_pred hHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEE
Q 012357 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIE 227 (465)
Q Consensus 164 aegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~ 227 (465)
|+|+ .+.|-++++||||..||...+.++-.-+.-...|+ ...+..+|..++.+.+.++.
T Consensus 424 ARAL-----flEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 424 ARAL-----FLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred HHHH-----hcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhh
Confidence 9999 78999999999999999875444433333233444 45677788887777766554
No 441
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.50 E-value=3.2e-07 Score=84.35 Aligned_cols=129 Identities=10% Similarity=0.054 Sum_probs=72.1
Q ss_pred eEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCcccccc-ccCCCCCCccchHHHHHHhhhcccc
Q 012357 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDG-NFDDPRLTDYDTLLENIRGLKEGKA 135 (465)
Q Consensus 58 L~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~-vfQ~p~l~~~~tv~enL~~l~~~~~ 135 (465)
..+.++. +..|+|||||||||+++.+...+ ...+.+...+. .+.++ ++... ... +
T Consensus 16 i~~~~~~---~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~----~~~g~~~~~~~-----~~~---i-------- 72 (162)
T cd03227 16 VTFGEGS---LTIITGPNGSGKSTILDAIGLALGGAQSATRRRSG----VKAGCIVAAVS-----AEL---I-------- 72 (162)
T ss_pred EecCCCC---EEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCc----ccCCCcceeeE-----EEE---e--------
Confidence 3344556 89999999999999999987776 44333222100 01111 11000 000 0
Q ss_pred ccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH-----
Q 012357 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP----- 207 (465)
Q Consensus 136 ~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI----- 207 (465)
+ ......+ ...+++.+++++.. .+...|.+.++|||++++|+.....+. .++..+|.++
T Consensus 73 -----~--~~~~lS~-----G~~~~~~la~~L~~-~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH 139 (162)
T cd03227 73 -----F--TRLQLSG-----GEKELSALALILAL-ASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITH 139 (162)
T ss_pred -----h--heeeccc-----cHHHHHHHHHHHHh-cCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 0 0000111 13467888888731 111278999999999999998755554 3333335554
Q ss_pred -HHHHHHHhceEEEccC
Q 012357 208 -EEIIHQISETVYPMYK 223 (465)
Q Consensus 208 -~~vi~~i~d~V~~m~~ 223 (465)
.+.. ..+|+++.|..
T Consensus 140 ~~~~~-~~~d~~~~l~~ 155 (162)
T cd03227 140 LPELA-ELADKLIHIKK 155 (162)
T ss_pred CHHHH-HhhhhEEEEEE
Confidence 3433 45788877754
No 442
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=8.8e-07 Score=88.21 Aligned_cols=68 Identities=7% Similarity=0.005 Sum_probs=45.8
Q ss_pred chhhhhHhHHhh---hh-ccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH-----HHHHHHHh---ceEEEccCcEE
Q 012357 159 SRIVIIEGIYAL---SE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP-----EEIIHQIS---ETVYPMYKAFI 226 (465)
Q Consensus 159 qRVlIaegl~aL---~d-~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI-----~~vi~~i~---d~V~~m~~G~I 226 (465)
+++.+++++... .. ..+|.+.++|||++++|+....++++.+.+.+.++ ...+..+| .+++.+.+|.+
T Consensus 190 ~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 190 RTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhccchhccCccEEEEeCcEE
Confidence 677888776311 11 35789999999999999999888887776554333 33344455 55666666654
No 443
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.42 E-value=4e-07 Score=96.67 Aligned_cols=48 Identities=23% Similarity=0.287 Sum_probs=44.5
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~ 101 (465)
..+++++ +.+.+|+ .++|.|+||+|||||+++|++.. |+.|.|.+.|.
T Consensus 146 ~~vid~l-~~i~~Gq---~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Ge 194 (438)
T PRK07721 146 VRAIDSL-LTVGKGQ---RVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGE 194 (438)
T ss_pred hhhhhee-eeecCCc---EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEec
Confidence 5689999 9999999 99999999999999999999999 89999998664
No 444
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.29 E-value=1.3e-06 Score=84.29 Aligned_cols=103 Identities=12% Similarity=0.120 Sum_probs=60.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc--CCCeeEEEECCeecCccccccccCCCCCC-ccchHHHHHHhhhccccccccccccc
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNF--MPSIAVITMDNYNDSSRIIDGNFDDPRLT-DYDTLLENIRGLKEGKAVQVPIYDFK 144 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gl--lP~sG~I~lDg~~~~~~~ig~vfQ~p~l~-~~~tv~enL~~l~~~~~~~~p~~d~~ 144 (465)
++.|.||||+|||||++.+... ++..|....-. ...+++..|....+ +..++.+++
T Consensus 31 ~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~----~~~~~~~d~i~~~l~~~~si~~~~----------------- 89 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD----SATIGLVDKIFTRMSSRESVSSGQ----------------- 89 (213)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC----CcEEeeeeeeeeeeCCccChhhcc-----------------
Confidence 8899999999999999999843 34444432211 11233333322111 111221111
Q ss_pred cccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHH----HHHHHHHHHHc
Q 012357 145 SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL----VKRVFRDIQRV 203 (465)
Q Consensus 145 ~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l----~rrIlrdl~e~ 203 (465)
.......+++.++..+ ...+.+.++|||++++|+.. ...+++.+.+.
T Consensus 90 -------S~f~~el~~l~~~l~~-----~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~ 140 (213)
T cd03281 90 -------SAFMIDLYQVSKALRL-----ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKR 140 (213)
T ss_pred -------chHHHHHHHHHHHHHh-----CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc
Confidence 0111233677777666 77899999999999999863 23455665544
No 445
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.27 E-value=1.2e-06 Score=96.89 Aligned_cols=75 Identities=13% Similarity=0.215 Sum_probs=54.5
Q ss_pred chhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEc------cC
Q 012357 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPM------YK 223 (465)
Q Consensus 159 qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m------~~ 223 (465)
|||=+|.-+.- .....-+.++||||+||++..+.+++ ..+.+.|.|+ +++++ -||.|+-+ ..
T Consensus 829 QRvKLA~EL~k--~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk-~AD~IIDLGPeGG~~G 905 (935)
T COG0178 829 QRVKLAKELSK--RSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK-TADWIIDLGPEGGDGG 905 (935)
T ss_pred HHHHHHHHHhh--ccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe-ecCEEEEcCCCCCCCC
Confidence 89988877621 23345899999999999998777665 5666789888 55554 46777664 34
Q ss_pred cEEEecCCcceEE
Q 012357 224 AFIEPDLQTAHIK 236 (465)
Q Consensus 224 G~I~~~g~~aDIi 236 (465)
|+|+.+|.+.++.
T Consensus 906 G~iva~GTPeeva 918 (935)
T COG0178 906 GEIVASGTPEEVA 918 (935)
T ss_pred ceEEEecCHHHHH
Confidence 7788888877774
No 446
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.25 E-value=1.2e-06 Score=82.25 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=52.4
Q ss_pred eeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----ccccccccCCC--CCCccchHHHHHH
Q 012357 56 CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDDP--RLTDYDTLLENIR 128 (465)
Q Consensus 56 VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----~~~ig~vfQ~p--~l~~~~tv~enL~ 128 (465)
+.+.++.|+ .++|+||||||||||+++|++++ |+.|.|.+++.... +..+++.++.. ......++.+.+.
T Consensus 18 l~~~v~~g~---~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (186)
T cd01130 18 LWLAVEARK---NILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLR 94 (186)
T ss_pred HHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHH
Confidence 345568899 99999999999999999999999 78899999875321 22344444433 3344566777776
Q ss_pred hhh
Q 012357 129 GLK 131 (465)
Q Consensus 129 ~l~ 131 (465)
...
T Consensus 95 ~~l 97 (186)
T cd01130 95 SAL 97 (186)
T ss_pred HHh
Confidence 543
No 447
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=98.23 E-value=2.9e-07 Score=88.76 Aligned_cols=145 Identities=26% Similarity=0.335 Sum_probs=95.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCC------------eeEEEECCeecCccccccccCC----------CCCCccchHHH
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMPS------------IAVITMDNYNDSSRIIDGNFDD----------PRLTDYDTLLE 125 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP~------------sG~I~lDg~~~~~~~ig~vfQ~----------p~l~~~~tv~e 125 (465)
++|++|+.|+||||++..+....|. +-.|.|||+++.++.+. .|++ |..|+.....+
T Consensus 121 l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD-~f~dP~~AharRGapwTFD~~lfl~ 199 (323)
T KOG2702|consen 121 LTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLD-LFKDPQTAHARRGAPWTFDSNLFLQ 199 (323)
T ss_pred eeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHH-hhcChHHHHhhcCCCcccCHHHHHH
Confidence 9999999999999999999885431 24588999998765443 2223 34566666666
Q ss_pred HHHhhh--ccccccccccccccccccCccccccccchhhhhHhHHhhhhcc-----CcceeeeeeeecCccHHHHHHHHH
Q 012357 126 NIRGLK--EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL-----RPLIDLRVSVTGGVHFDLVKRVFR 198 (465)
Q Consensus 126 nL~~l~--~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~-----~p~LdllDEpts~LD~~l~rrIlr 198 (465)
.+..++ ....+..|.|++..++.+....-.-..-|++|.||.|+|++.. -..+|.+-+.+...+.. ..|+-+
T Consensus 200 l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a-~~RVa~ 278 (323)
T KOG2702|consen 200 LCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAA-EERVAK 278 (323)
T ss_pred HHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHH-HHHHHH
Confidence 666665 2345678899999988887554444568999999999998532 23344444444333332 345555
Q ss_pred HHHHcC--CCHHHHHHHH
Q 012357 199 DIQRVG--QEPEEIIHQI 214 (465)
Q Consensus 199 dl~e~G--~TI~~vi~~i 214 (465)
+....| .|+.+...++
T Consensus 279 RHl~sGl~~t~~ea~er~ 296 (323)
T KOG2702|consen 279 RHLQSGLVTTIAEARERF 296 (323)
T ss_pred HhhcccccCCHHHHHhhc
Confidence 555567 6665554443
No 448
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.21 E-value=5e-06 Score=79.32 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=30.9
Q ss_pred chhhhhHhHHhhhhccCcceeeeeeee-----cCccHHHHHHHHHHHH
Q 012357 159 SRIVIIEGIYALSEKLRPLIDLRVSVT-----GGVHFDLVKRVFRDIQ 201 (465)
Q Consensus 159 qRVlIaegl~aL~d~~~p~LdllDEpt-----s~LD~~l~rrIlrdl~ 201 (465)
+++.|++.+ ..+|.+.++|||| +++|+.....+.+-+.
T Consensus 159 ~f~~ia~~l-----~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~ 201 (215)
T PTZ00132 159 PFLWLARRL-----TNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQ 201 (215)
T ss_pred HHHHHHHHH-----hhcccceecCCcccCCCccccCHHHHHHHHHHHH
Confidence 567888888 7789999999999 9999997666654443
No 449
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.19 E-value=2.5e-06 Score=90.31 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=61.1
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee---c-------------Cccccccc
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN---D-------------SSRIIDGN 111 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~---~-------------~~~~ig~v 111 (465)
+..+++++ +.+.+|+ .+||+|+||+|||||+++|+++. |+.+.+-..|+. . .+..+++.
T Consensus 142 Gi~aID~l-l~I~~GQ---~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~ 217 (434)
T PRK07196 142 GVNAINGL-LTIGKGQ---RVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAA 217 (434)
T ss_pred ceeeccce-EeEecce---EEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEe
Confidence 35799999 9999999 99999999999999999999998 776544444431 1 12357788
Q ss_pred cCCCCCCccchHHHHHHhh
Q 012357 112 FDDPRLTDYDTLLENIRGL 130 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l 130 (465)
+|+...+...++.++....
T Consensus 218 ~~d~s~~~rl~a~e~a~~i 236 (434)
T PRK07196 218 PADESPLMRIKATELCHAI 236 (434)
T ss_pred cCCCChhhhHHHHHHHHHH
Confidence 8888888777787776654
No 450
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.17 E-value=2e-06 Score=80.55 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=47.2
Q ss_pred cCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc------cccccccCCCCCCccchHHHHHHhh
Q 012357 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGL 130 (465)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~------~~ig~vfQ~p~l~~~~tv~enL~~l 130 (465)
+|+ +++|+|+||||||||+++|++++ + +.++|..+.. ...++.+++...+++.+...++.+.
T Consensus 2 ~ge---~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGE---SYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCc---EEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 478 99999999999999999999998 4 4677765432 2346777776666777777777653
No 451
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.08 E-value=3.3e-06 Score=95.57 Aligned_cols=116 Identities=13% Similarity=0.068 Sum_probs=65.6
Q ss_pred eeeEEecC-ccceEEEEEcCCCCcHHHHHHHHHhcC--CCee-EEEECCeecCccccccccCCCCCC-ccchHHHHHHhh
Q 012357 56 CQLLAQKN-HGIILVGVAGPSGAGKTVFTEKVLNFM--PSIA-VITMDNYNDSSRIIDGNFDDPRLT-DYDTLLENIRGL 130 (465)
Q Consensus 56 VsL~i~~G-e~~~IigIiGpSGSGKSTL~r~L~gll--P~sG-~I~lDg~~~~~~~ig~vfQ~p~l~-~~~tv~enL~~l 130 (465)
+++.+..+ . +++|.||||+|||||++.|++.. +.+| .|.... ...+++..|.+..+ +..++.+++..+
T Consensus 314 ~di~l~~~~~---~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~----~~~~~~~d~i~~~i~~~~si~~~LStf 386 (771)
T TIGR01069 314 FTLNLKFEKR---VLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANE----HSEIPYFEEIFADIGDEQSIEQNLSTF 386 (771)
T ss_pred ceeEeCCCce---EEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCc----cccccchhheeeecChHhHHhhhhhHH
Confidence 57777766 6 99999999999999999999983 5555 222211 01233322221111 111222222111
Q ss_pred hccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHH----HHHHHHHHHcCCC
Q 012357 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLV----KRVFRDIQRVGQE 206 (465)
Q Consensus 131 ~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~----rrIlrdl~e~G~T 206 (465)
.. + . .+.+.|+.. ...+.+.++|||++|+|+... ..+++.+.+.|.+
T Consensus 387 S~-------------~-----m-----~~~~~il~~------~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~ 437 (771)
T TIGR01069 387 SG-------------H-----M-----KNISAILSK------TTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQ 437 (771)
T ss_pred HH-------------H-----H-----HHHHHHHHh------cCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 00 0 0 012222222 246899999999999999853 3456777777766
Q ss_pred H
Q 012357 207 P 207 (465)
Q Consensus 207 I 207 (465)
+
T Consensus 438 v 438 (771)
T TIGR01069 438 V 438 (771)
T ss_pred E
Confidence 5
No 452
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=98.07 E-value=1.5e-05 Score=73.88 Aligned_cols=129 Identities=26% Similarity=0.271 Sum_probs=103.2
Q ss_pred cceeeeccCCCCCCchhhhhhhhhcCCC--ceEEEEEeeecCCCCeEeeeeeeeee-e-eeEeccccccCcEEEEEEEec
Q 012357 278 EETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEV-S-VRLLGGLMALGYTIATILKRS 353 (465)
Q Consensus 278 ~~~~~i~~~p~~~~~~~~~~~i~~~~~~--~~~~l~~~~~~~~~p~i~~~~~~f~v-~-~~il~gl~~~g~~~~~~~~r~ 353 (465)
....|+|.-.|..+......++|.|..+ +.+.++|.++..++-+-.++-.++.| + .++..-|..|||.....+...
T Consensus 29 ~~q~d~Yfd~p~~~l~~~~~~LRiR~~~~~~~~~lT~K~~~~~~~~~~~~E~e~~v~~~~~~~~iL~~lg~~~~~~~~K~ 108 (169)
T cd07890 29 EFQEDIYFDHPDRDLAATDEALRLRRMGDSGKTLLTYKGPKLDGGPKVREEIETEVADPEAMKEILERLGFGPVGRVKKE 108 (169)
T ss_pred eeEeEEEEcCCchhHHhCCCcEEEEEeCCCCcEEEEEECCCCCCCccceEEEEEecCCHHHHHHHHHHcCCceeEEEEEE
Confidence 4556899888888777777889998876 88889999887665333444444444 1 123333567999999999999
Q ss_pred cceeecCcEEEEehhhhhcCcceEEEecc------chhHHHHHhhhhcCcc-CccchhHHH
Q 012357 354 SHIFYDDRVCVKTDWLEQLNRKYVQVQGR------DRLYVKYVGEQLGLDG-SYVPRTYIE 407 (465)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~~~-~~~~~~~~~ 407 (465)
-..|.-+.+.|.+|++++|+. |+.|.+. .++.+..++.+||+.+ .-+++||.|
T Consensus 109 R~~~~~~~~~v~lD~~~~lG~-f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~ 168 (169)
T cd07890 109 REIYLLGQTRVHLDRVEGLGD-FVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLE 168 (169)
T ss_pred EEEEEECCEEEEEEccCCCCc-eEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhc
Confidence 999999999999999999987 9999999 8889999999999987 789999986
No 453
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.03 E-value=8.3e-06 Score=76.64 Aligned_cols=45 Identities=9% Similarity=-0.000 Sum_probs=30.9
Q ss_pred ccCcceeeeeeeecCccHHHH----HHHHHHHHHc-CCCH-----HHHHHHHhce
Q 012357 173 KLRPLIDLRVSVTGGVHFDLV----KRVFRDIQRV-GQEP-----EEIIHQISET 217 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~----rrIlrdl~e~-G~TI-----~~vi~~i~d~ 217 (465)
...|.+.++|||++++|+... ..+++.+.++ |.++ ...+.++|++
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 347899999999999999743 3455666654 6665 2345566664
No 454
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.01 E-value=8.1e-06 Score=88.18 Aligned_cols=44 Identities=25% Similarity=0.471 Sum_probs=39.2
Q ss_pred eEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 43 ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+....|....++|+.+.+ ++. +++|.|||||||||+++.|+..+
T Consensus 265 ~A~~~g~~RLIDN~~~~~-~~~---ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 265 IAVRCGSTRLIDNVFLMK-RQP---IIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred EEEEeCCeEEEeeeEecc-CCc---EEEEECCCCCCHHHHHHHHHHHc
Confidence 556678999999999977 667 99999999999999999999776
No 455
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=97.99 E-value=3.8e-05 Score=71.58 Aligned_cols=146 Identities=23% Similarity=0.347 Sum_probs=107.0
Q ss_pred HHHHHHHhccccc--ccccceeeeccCCCCCCchhhhhhhhhc-CCCceEEEEEeeecCCCCeEeeeeeeeeeeee----
Q 012357 262 VDEIKAVMSKEHT--ETTEETYDIYLLPPGEDPDACQSYLRMR-NRDGKYNLMFEEWVTDSPFIISPRITFEVSVR---- 334 (465)
Q Consensus 262 ~~~i~~~l~~~~~--~~~~~~~~i~~~p~~~~~~~~~~~i~~~-~~~~~~~l~~~~~~~~~p~i~~~~~~f~v~~~---- 334 (465)
.+.+.+.+.+... ...+..-|+|.--|.-+...-...+|.| ..++...++|.|+..+.+.-+.- ++++.++
T Consensus 13 ~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~k~r~--E~E~~v~D~~~ 90 (178)
T COG1437 13 LEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRINGGEVFLTYKGPKLDRESKTRE--EIEIEVSDVEK 90 (178)
T ss_pred HHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecCCcEEEEEeccccccccccee--eEEEEeCCHHH
Confidence 3455666655422 2233455888877776555444566667 56789999999999999984443 4444442
Q ss_pred EeccccccCcEEEEEEEeccceeecCcEEEEehhhhhcCcceEEEecc---------chhHHHHHhhhhcCc-cCccchh
Q 012357 335 LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLD-GSYVPRT 404 (465)
Q Consensus 335 il~gl~~~g~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------~~~~~~~~~~~~~~~-~~~~~~~ 404 (465)
.+.=+-.||+..+..++....+|..|+++|++|.+++|+. |+-|-=. .++.+-+.+.+|||. +.-+++|
T Consensus 91 ~~~il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~VegLG~-F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~s 169 (178)
T COG1437 91 ALEILKRLGFKEVAVVKKTREIYKVGNVTIELDAVEGLGD-FLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRS 169 (178)
T ss_pred HHHHHHHcCCceeeEEEEEEEEEeeCCEEEEEecccCCcc-cEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchh
Confidence 2222478999999999999999999999999999999984 7766432 235688899999997 9999999
Q ss_pred HHHHHH
Q 012357 405 YIEQIQ 410 (465)
Q Consensus 405 ~~~~~~ 410 (465)
|+|++.
T Consensus 170 YlELl~ 175 (178)
T COG1437 170 YLELLL 175 (178)
T ss_pred HHHHHh
Confidence 998873
No 456
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.99 E-value=1e-05 Score=85.74 Aligned_cols=154 Identities=16% Similarity=0.119 Sum_probs=87.4
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCCccchHHHHHH
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL~ 128 (465)
..+++.+ +.+.+|+ .++|.|+||+|||||+++|++.. |+.|.|.+.|..- ..+.+.+.
T Consensus 144 iraID~l-l~I~~Gq---ri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-----------------~ev~e~~~ 202 (432)
T PRK06793 144 IKSIDSM-LTIGIGQ---KIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-----------------REVKDFIR 202 (432)
T ss_pred CEEEecc-ceecCCc---EEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc-----------------ccHHHHHH
Confidence 5688885 9999999 99999999999999999999999 8888887766431 23333333
Q ss_pred hhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHH-HHHHHHHcCCCH
Q 012357 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR-VFRDIQRVGQEP 207 (465)
Q Consensus 129 ~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rr-Ilrdl~e~G~TI 207 (465)
.............-....+.........+.....+||-+ .+.-.+-++++|++|...|....-. .+.+.-..|.+.
T Consensus 203 ~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf---r~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~ 279 (432)
T PRK06793 203 KELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYF---RDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTL 279 (432)
T ss_pred HHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH---HHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeee
Confidence 221111111100000001111101111111222233322 2456788999999999888752211 112222236655
Q ss_pred --HHHHHHHhceEEEccCcEEE
Q 012357 208 --EEIIHQISETVYPMYKAFIE 227 (465)
Q Consensus 208 --~~vi~~i~d~V~~m~~G~I~ 227 (465)
...+.++++|......|.|.
T Consensus 280 ~~~s~l~~L~ERag~~~~GSiT 301 (432)
T PRK06793 280 LMESYMKKLLERSGKTQKGSIT 301 (432)
T ss_pred eeeccchhHHHHhccCCCcceE
Confidence 23367777787777677654
No 457
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.98 E-value=1.4e-05 Score=84.81 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=46.8
Q ss_pred eeEeee-CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECC
Q 012357 42 TLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (465)
Q Consensus 42 ~ls~~~-g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg 100 (465)
+++..| .+..+++.++ .+.+|+ .++|.|+||||||||+++|+++. |++|.|.+.|
T Consensus 144 ~v~~~l~TGi~aID~L~-~I~~Gq---ri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liG 200 (450)
T PRK06002 144 RVETGLRTGVRVIDIFT-PLCAGQ---RIGIFAGSGVGKSTLLAMLARADAFDTVVIALVG 200 (450)
T ss_pred cceEEcCCCcEEeeeec-eecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecc
Confidence 344444 2477888885 899999 99999999999999999999998 8999988865
No 458
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.89 E-value=7.9e-06 Score=77.51 Aligned_cols=162 Identities=22% Similarity=0.316 Sum_probs=88.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCcccc--ccc-cCC---CCCCccchHHHHHHhhhcccccccc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRII--DGN-FDD---PRLTDYDTLLENIRGLKEGKAVQVP 139 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~~~~i--g~v-fQ~---p~l~~~~tv~enL~~l~~~~~~~~p 139 (465)
.+||||.|.+-||||||++.+..++|.+..|+-|+++.+...+ .+. +++ +..++.....+.++....+... .|
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~-~~ 82 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHN-AP 82 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccc-cc
Confidence 5799999999999999999999999988899999998764433 222 443 3344444455555443332111 11
Q ss_pred ccccccccc-----cC-ccccccccchhhhhHhHHhhh-hccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHHHH
Q 012357 140 IYDFKSSSR-----IG-YRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (465)
Q Consensus 140 ~~d~~~~~~-----~~-~~~~~l~~qRVlIaegl~aL~-d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~vi~ 212 (465)
......-.. .. .-......+.++|++|.++.. +......+.....+.+-+.+..||- .+.+.-..+ .-
T Consensus 83 ~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~----~Rt~y~p~~-tg 157 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRRE----ARTYYPPDD-TG 157 (225)
T ss_pred hHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhc----ccccCCCCC-Cc
Confidence 100000000 00 001223457889999997654 3444455566566654443332221 111221111 12
Q ss_pred HHhceEEEccCcEEEecCCcc
Q 012357 213 QISETVYPMYKAFIEPDLQTA 233 (465)
Q Consensus 213 ~i~d~V~~m~~G~I~~~g~~a 233 (465)
.+.-.++|+|..+.+..+..+
T Consensus 158 yfd~~~~P~Y~~~~~~~~d~~ 178 (225)
T KOG3308|consen 158 YFDPVVWPHYEKNFEEARDRS 178 (225)
T ss_pred cccCccchHHHHHHHHHHhhc
Confidence 333346677666665555543
No 459
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.78 E-value=3.6e-05 Score=71.30 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEE
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITM 98 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP~sG~I~l 98 (465)
+++|+||||||||||++.|++.++..|.+.+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~ 33 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAGDPRVHF 33 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCcCCcEEE
Confidence 8999999999999999999998843344443
No 460
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.74 E-value=0.00015 Score=75.90 Aligned_cols=154 Identities=14% Similarity=0.081 Sum_probs=85.8
Q ss_pred EEEEeeeeeEEecCcc--ceEEEEEcCCCCcHHHHHHHHHhcC-CCee-EEEECCeecCccccccccCCCCCCccchHHH
Q 012357 50 FIVIRACQLLAQKNHG--IILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYNDSSRIIDGNFDDPRLTDYDTLLE 125 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~--~~IigIiGpSGSGKSTL~r~L~gll-P~sG-~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~e 125 (465)
+..+-+..|.+..|+- ..++..+|.||-|||||+++++|.+ |+.| +|..-+ ++|-+|...--..-++++
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~ln-------VSykpqkispK~~~tvR~ 421 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLN-------VSYKPQKISPKREGTVRQ 421 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccc-------eeccccccCccccchHHH
Confidence 3445566666666653 4488899999999999999999998 7654 444333 333344322111223443
Q ss_pred HHHhhhccc--------ccccc-----ccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHH
Q 012357 126 NIRGLKEGK--------AVQVP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (465)
Q Consensus 126 nL~~l~~~~--------~~~~p-----~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l 192 (465)
.+..-.... .+..| .++.......+ ...|||.++-.+ -....+.+.|||.+-+|.+.
T Consensus 422 ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSg-----gelQRval~KOG-----GKpAdvYliDEpsAylDSeQ 491 (592)
T KOG0063|consen 422 LLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSG-----GELQRVALALCL-----GKPADVYLIDEPSAYLDSEQ 491 (592)
T ss_pred HHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCc-----hhhHHHHHHHhc-----CCCCceEEecCchhhcChHH
Confidence 333211100 00011 11111111111 134899998888 77889999999999999874
Q ss_pred H---HHHH-HHHHHcCCCHH------HHHHHHhceEEE
Q 012357 193 V---KRVF-RDIQRVGQEPE------EIIHQISETVYP 220 (465)
Q Consensus 193 ~---rrIl-rdl~e~G~TI~------~vi~~i~d~V~~ 220 (465)
. .+++ |-+...+.|.. -.....+|+|++
T Consensus 492 Ri~AskvikRfilhakktafvVEhdfImaTYladrviv 529 (592)
T KOG0063|consen 492 RIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 529 (592)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEE
Confidence 2 2333 33344455551 113355666544
No 461
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.74 E-value=3.4e-05 Score=60.14 Aligned_cols=33 Identities=15% Similarity=0.438 Sum_probs=26.8
Q ss_pred eeEEe-cCccceEEEEEcCCCCcHHHHHHHHHhcC-CC
Q 012357 57 QLLAQ-KNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS 92 (465)
Q Consensus 57 sL~i~-~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~ 92 (465)
.+.+. .|. ++.|.|+|||||||++.++.-++ |.
T Consensus 16 ~~~~~~~g~---~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 16 TIDFDPRGD---VTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred EEeecCCCc---EEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 33444 367 89999999999999999998887 54
No 462
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.72 E-value=5.4e-05 Score=77.61 Aligned_cols=49 Identities=20% Similarity=0.214 Sum_probs=44.1
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~ 101 (465)
+..+++++ +.+.+|+ .++|.|+||+|||||+++|++.. |+.|.+..-|.
T Consensus 56 Gi~aiD~l-~~i~~Gq---ri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe 105 (326)
T cd01136 56 GVRAIDGL-LTVGKGQ---RLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE 105 (326)
T ss_pred CcEEEeee-eEEcCCc---EEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence 46799999 9999999 99999999999999999999999 88887776554
No 463
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.69 E-value=2.4e-05 Score=84.48 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=54.2
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~ 103 (465)
.+++.-+|...+++++++.+..|+ .++|+|+||+|||||++.|.+++ |.+|.+.++.-.+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G~---~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGGH---NLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCCc---EEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 478888888889999999999999 99999999999999999999999 7899888887543
No 464
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.68 E-value=5.4e-05 Score=70.99 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS 104 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~ 104 (465)
+++|+||||||||||+++|++..+. .+.+.+....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~~ 38 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYIT 38 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEECC
Confidence 8999999999999999999998722 4556665544
No 465
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.68 E-value=4.8e-05 Score=77.80 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=45.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------------ccccccccCCCCCCccchHHHHHHhh
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------SRIIDGNFDDPRLTDYDTLLENIRGL 130 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------------~~~ig~vfQ~p~l~~~~tv~enL~~l 130 (465)
+++++|||||||||++..|++.+ +..+.|.+.+.+.. +..+.++++.....+...+.+++...
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999998 76677777665432 12356666654444445566666543
No 466
>COG4240 Predicted kinase [General function prediction only]
Probab=97.68 E-value=3.1e-05 Score=74.93 Aligned_cols=106 Identities=24% Similarity=0.422 Sum_probs=64.7
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC-C----CeeEEEECCeecCcc-------ccccccCC---CCCCccchHHHH-H
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDSSR-------IIDGNFDD---PRLTDYDTLLEN-I 127 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll-P----~sG~I~lDg~~~~~~-------~ig~vfQ~---p~l~~~~tv~en-L 127 (465)
++|+|+||.||-||||||++-.|..++ . ..+..++|+++++.. +..-.-|. |...| .++..| +
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD-~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHD-PTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCc-hHHHHHHH
Confidence 449999999999999999998888776 1 567899999987631 11111111 22334 344444 4
Q ss_pred Hhhhc-cccccccccccccccccCcc----ccccccchhhhhHhHHhh
Q 012357 128 RGLKE-GKAVQVPIYDFKSSSRIGYR----TLEVPSSRIVIIEGIYAL 170 (465)
Q Consensus 128 ~~l~~-~~~~~~p~~d~~~~~~~~~~----~~~l~~qRVlIaegl~aL 170 (465)
..+.+ +..+..|.||.+.....+.. ........++|.||-+.-
T Consensus 127 nai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvG 174 (300)
T COG4240 127 NAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVG 174 (300)
T ss_pred HHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeee
Confidence 44443 34567888988654333322 111122667777776543
No 467
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.68 E-value=5.4e-05 Score=79.29 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=57.8
Q ss_pred CCCCccccccccceeeeeccCcceeeceeeeeeeEeeeC-cEEEEe-----------eeeeEEecCccceEEEEEcCCCC
Q 012357 10 DSPRRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFEKG-FFIVIR-----------ACQLLAQKNHGIILVGVAGPSGA 77 (465)
Q Consensus 10 ~~~~~~~~l~~~~~~l~~~~~~k~y~~~~v~~~ls~~~g-~~~aL~-----------~VsL~i~~Ge~~~IigIiGpSGS 77 (465)
.+.+|...|++-+.. +...........-.++++|.|. ...+|+ |+.+.+.+|+ .++|+||+||
T Consensus 105 ~~~ER~~~Ll~v~~v--n~~~~e~~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq---~~~IvG~~g~ 179 (415)
T TIGR00767 105 KEGERYFALLKVESV--NGDDPEKAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQ---RGLIVAPPKA 179 (415)
T ss_pred ccHhHHHHHhCCCcc--CCCCccccCCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCC---EEEEECCCCC
Confidence 345677777774433 2221223344577789999995 457886 9999999999 9999999999
Q ss_pred cHHHHHHHHHhcC
Q 012357 78 GKTVFTEKVLNFM 90 (465)
Q Consensus 78 GKSTL~r~L~gll 90 (465)
|||||++.|...+
T Consensus 180 GKTtL~~~i~~~I 192 (415)
T TIGR00767 180 GKTVLLQKIAQAI 192 (415)
T ss_pred ChhHHHHHHHHhh
Confidence 9999999999876
No 468
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.67 E-value=4.1e-05 Score=72.59 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=37.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC-C-CeeEEEECCeecCc---cccccccCCC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYNDSS---RIIDGNFDDP 115 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll-P-~sG~I~lDg~~~~~---~~ig~vfQ~p 115 (465)
.+++|+|+||||||||++.|.+.+ + ..|.+.+||-.+.. ..+++.+|+.
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~ 78 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADR 78 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccH
Confidence 399999999999999999999987 3 45689999865432 2356665553
No 469
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.67 E-value=0.00021 Score=69.72 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=29.0
Q ss_pred EecCccceEEEEEcCCCCcHHHHH-HHHHhcC-CCeeEEEEC
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFT-EKVLNFM-PSIAVITMD 99 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~-r~L~gll-P~sG~I~lD 99 (465)
+++|+ +++|.|++|||||||+ +.+.+.. +....+.+.
T Consensus 21 i~~g~---~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 21 IPAGS---LILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCc---EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 68899 9999999999999994 7788776 544444443
No 470
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.66 E-value=3.7e-05 Score=72.73 Aligned_cols=28 Identities=36% Similarity=0.679 Sum_probs=25.8
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcCC
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP 91 (465)
++|+ +++|+||||||||||+++|++.+|
T Consensus 3 ~~g~---~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGL---LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCC---EEEEECCCCCCHHHHHHHHHhhCc
Confidence 4688 999999999999999999999874
No 471
>PRK08149 ATP synthase SpaL; Validated
Probab=97.63 E-value=9.6e-05 Score=78.29 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=43.8
Q ss_pred CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCe---eEEEECCee
Q 012357 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI---AVITMDNYN 102 (465)
Q Consensus 48 g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~s---G~I~lDg~~ 102 (465)
.+..+++++ +.+.+|+ .++|.|+||+|||||+++|++.. ++. |.|-.+|..
T Consensus 137 tGi~aid~l-l~i~~Gq---~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~e 191 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQ---RMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGRE 191 (428)
T ss_pred CCcEEEeee-eeEecCC---EEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCcc
Confidence 346799999 9999999 99999999999999999999988 665 666666654
No 472
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.63 E-value=0.00014 Score=68.82 Aligned_cols=32 Identities=13% Similarity=0.006 Sum_probs=25.2
Q ss_pred ccCcceeeeeeeecCccHHHHHHHH---HHHHHcC
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVG 204 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G 204 (465)
..+..+.++|||.++|.|..+..++ +++.+.|
T Consensus 144 f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sG 178 (233)
T COG3910 144 FNGQGIYILDEPEAALSPSRQLELLAILRDLADSG 178 (233)
T ss_pred hccCceEEecCccccCCHHHHHHHHHHHHHHHhcC
Confidence 5678999999999999998766555 5555555
No 473
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.61 E-value=0.00037 Score=67.59 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=34.3
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
...+-+++++...+++ +++|.||||+||||+++.+++..
T Consensus 16 ~~~v~ndi~l~~~~~~---~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 16 SSFVPNDVDLGATSPR---ILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred CCeEEeeeEEeecCCc---EEEEECCCCCchHHHHHHHHHHH
Confidence 3467788888888899 99999999999999999998874
No 474
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.61 E-value=6.8e-05 Score=79.53 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=45.7
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~ 102 (465)
+..+++++ +.+.+|+ .++|.|+||+|||||+++|++.. ++.|.+.+.|..
T Consensus 142 Gi~aID~l-l~i~~Gq---rigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 142 GIRAIDSV-ATCGEGQ---RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred Cceeeeee-eecCCCC---EEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 57899999 9999999 99999999999999999999999 888888887753
No 475
>PRK13695 putative NTPase; Provisional
Probab=97.61 E-value=4.4e-05 Score=70.70 Aligned_cols=54 Identities=2% Similarity=-0.070 Sum_probs=37.7
Q ss_pred cCcceeeeeee--ecCccHHHHHHHHHHHHHcCCCH-----HHHHHHHhceEEEccCcEEEe
Q 012357 174 LRPLIDLRVSV--TGGVHFDLVKRVFRDIQRVGQEP-----EEIIHQISETVYPMYKAFIEP 228 (465)
Q Consensus 174 ~~p~LdllDEp--ts~LD~~l~rrIlrdl~e~G~TI-----~~vi~~i~d~V~~m~~G~I~~ 228 (465)
-.|.+.++||+ +..++.. .++.++.+.+.|.++ ...+..++|++..+.+|++..
T Consensus 95 ~~~~~lllDE~~~~e~~~~~-~~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~ 155 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPK-FVKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYE 155 (174)
T ss_pred CCCCEEEEECCCcchhhhHH-HHHHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEE
Confidence 37899999995 4344533 355566665667776 345667899999999998743
No 476
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.59 E-value=4.4e-05 Score=77.59 Aligned_cols=42 Identities=21% Similarity=0.430 Sum_probs=35.8
Q ss_pred eeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECC
Q 012357 56 CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (465)
Q Consensus 56 VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg 100 (465)
+++.+..|+ .++|+|++|||||||+++|++.+ |..+.+.+++
T Consensus 137 l~~~v~~~~---~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied 179 (308)
T TIGR02788 137 LRLAIASRK---NIIISGGTGSGKTTFLKSLVDEIPKDERIITIED 179 (308)
T ss_pred HHHHhhCCC---EEEEECCCCCCHHHHHHHHHccCCccccEEEEcC
Confidence 446677899 99999999999999999999999 6677777753
No 477
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.57 E-value=9.3e-05 Score=78.71 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=44.8
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~ 101 (465)
+..+++++ +.+.+|+ .++|.|+||+|||||+++|++.. ++.|.+.+.|.
T Consensus 150 Gi~~ID~l-~~i~~Gq---~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGe 199 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQ---RMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGE 199 (441)
T ss_pred Cceeccce-eeecCCC---EEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEcc
Confidence 45799999 9999999 99999999999999999999998 88888888774
No 478
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.56 E-value=4.7e-05 Score=70.26 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=40.8
Q ss_pred EcCCCCcHHHHHHHHHhcCCCeeEEEECCeec------CccccccccCCCCCCccchHHHHHHhh
Q 012357 72 AGPSGAGKTVFTEKVLNFMPSIAVITMDNYND------SSRIIDGNFDDPRLTDYDTLLENIRGL 130 (465)
Q Consensus 72 iGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~------~~~~ig~vfQ~p~l~~~~tv~enL~~l 130 (465)
+|+|||||||++++|++.+ |.+.+||-.. .+...|+.||+....++.+...+..+.
T Consensus 1 ~G~sGsGKSTla~~la~~l---~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 62 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL---HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFA 62 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh---CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHH
Confidence 5999999999999999988 4566676432 123357778876666777777777664
No 479
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.55 E-value=5e-05 Score=70.90 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=45.9
Q ss_pred hhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEEecCCcceEEeeC
Q 012357 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (465)
Q Consensus 160 RVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~ 239 (465)
.++++++-+++.......+|...+++++.+.+..|.+.| .|.+..+...++..+.-. .+....+|++|.|
T Consensus 104 ~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~R----d~~s~~~~~~r~~~Q~~~------~~~~~~aD~vI~N 173 (179)
T cd02022 104 KVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKR----DGLSEEEAEARIASQMPL------EEKRARADFVIDN 173 (179)
T ss_pred CEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHc----CCCCHHHHHHHHHhcCCH------HHHHHhCCEEEEC
Confidence 577788776665555667888888898876654333223 377776666665443211 1345678888877
Q ss_pred CCC
Q 012357 240 KFN 242 (465)
Q Consensus 240 ~~~ 242 (465)
+.+
T Consensus 174 ~~~ 176 (179)
T cd02022 174 SGS 176 (179)
T ss_pred cCC
Confidence 654
No 480
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.55 E-value=9.3e-05 Score=71.96 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=39.2
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEE
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITM 98 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--P~sG~I~l 98 (465)
..+..++++.+.+|+ +++|.||||+||||+++.+++.. +..|....
T Consensus 18 ~~v~n~i~~~~~~g~---~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 18 SFVPNDIHLSAEGGY---CQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred CEEEEeEEEEecCCc---EEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 457888999999999 99999999999999999999954 77776443
No 481
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.53 E-value=0.00022 Score=80.53 Aligned_cols=61 Identities=10% Similarity=0.092 Sum_probs=40.0
Q ss_pred ccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEEecCCcceEEe
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI 237 (465)
...|.-+++.+.|++.+.+..||..+... .+..++.+++..|-..-. ..+-|-....|.++
T Consensus 150 vv~p~a~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~ 210 (712)
T PRK09518 150 VVAPDAEVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTT 210 (712)
T ss_pred EEecCCCeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEE
Confidence 45677899999999999888777655432 666666666666655555 55555444444443
No 482
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.51 E-value=0.00013 Score=77.81 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=44.6
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~ 102 (465)
+..+++++ +.+.+|+ .++|.|+||+|||||+++|++.. |+.+.+...|+.
T Consensus 150 Gi~~iD~l-~~i~~Gq---~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQ---RIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred eeeeeeec-cccCCCc---EEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 46799999 9999999 99999999999999999999999 888887776653
No 483
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.50 E-value=0.00011 Score=78.01 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=44.6
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~ 101 (465)
+..+++++ +.+.+|+ .++|.|+||+|||||+++|++.. |+.|.+...|.
T Consensus 132 G~~~id~l-~~i~~Gq---~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~ 181 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQ---RIGIFAGAGVGKSTLLGMIARGASADVNVIALIGE 181 (422)
T ss_pred Cceeehhh-ccccCCC---EEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEcc
Confidence 46799999 9999999 99999999999999999999999 88888877654
No 484
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.49 E-value=0.00017 Score=76.30 Aligned_cols=50 Identities=24% Similarity=0.244 Sum_probs=45.3
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~ 102 (465)
+..+++++ +.+.+|+ .++|.|+||+|||||+++|++.. ++.|.+.+.|..
T Consensus 124 Gi~~iD~l-~~i~~Gq---ri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger 174 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQ---RVGIFAGSGVGKSTLLGMIARNAKADINVIALIGER 174 (413)
T ss_pred cceeeeeE-EEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccc
Confidence 46789999 9999999 99999999999999999999998 888988877753
No 485
>PRK01889 GTPase RsgA; Reviewed
Probab=97.48 E-value=0.00013 Score=75.66 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=47.8
Q ss_pred EeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee---cC-ccccccccCCCCCCc
Q 012357 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN---DS-SRIIDGNFDDPRLTD 119 (465)
Q Consensus 53 L~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~---~~-~~~ig~vfQ~p~l~~ 119 (465)
++.+...+.+|+ +++|+|+||+|||||++.|.|.. +..|.|..++.. .+ .+.+.+++|+..++|
T Consensus 185 l~~L~~~L~~g~---~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~D 253 (356)
T PRK01889 185 LDVLAAWLSGGK---TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLID 253 (356)
T ss_pred HHHHHHHhhcCC---EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecC
Confidence 344555667889 99999999999999999999998 899999997642 21 234555665554443
No 486
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.47 E-value=2.3e-05 Score=72.66 Aligned_cols=62 Identities=19% Similarity=0.359 Sum_probs=39.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH---hcC-CCeeEEEECCee---cCccccccccCCCCCCccchHHHHHHh
Q 012357 68 LVGVAGPSGAGKTVFTEKVL---NFM-PSIAVITMDNYN---DSSRIIDGNFDDPRLTDYDTLLENIRG 129 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~---gll-P~sG~I~lDg~~---~~~~~ig~vfQ~p~l~~~~tv~enL~~ 129 (465)
+++|+|++||||||+++.|+ |+. ++.|.+...... ...+.+...+++..+.+..++.+++..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKD 73 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 89999999999999999999 554 445443222110 011234455666666666666666554
No 487
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.46 E-value=0.00012 Score=68.56 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC-C---CeeEEEECC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDN 100 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll-P---~sG~I~lDg 100 (465)
+.+++|+|+||||||||++.|...+ + ..|.|..++
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~ 44 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 5599999999999999999999988 4 257777654
No 488
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.46 E-value=8.7e-05 Score=63.92 Aligned_cols=32 Identities=28% Similarity=0.689 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg 100 (465)
+|+|.|++||||||+++.|+..+ ..-.+++|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~-~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL-GFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-TCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-CCeEEEecc
Confidence 68999999999999999999976 333677777
No 489
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.46 E-value=0.00017 Score=76.29 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=44.1
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~ 102 (465)
+..+++ .++.+.+|+ .++|.|+||+|||||+++|++.. |+.|.|.+.|..
T Consensus 127 Gi~aiD-~~~~i~~Gq---~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer 177 (418)
T TIGR03498 127 GVRVID-TFLPLCRGQ---RLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGER 177 (418)
T ss_pred ccEEEe-eeccccCCc---EEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeee
Confidence 456776 589999999 99999999999999999999998 889988887754
No 490
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.44 E-value=8.8e-05 Score=79.73 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=32.7
Q ss_pred EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCe
Q 012357 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI 93 (465)
Q Consensus 52 aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~s 93 (465)
++++.++.+.+|. +++++||||+||||++..|++.+ ...
T Consensus 245 ~~~~~~~~~~~g~---Vi~LvGpnGvGKTTTiaKLA~~~~~~~ 284 (484)
T PRK06995 245 VLDSEDALLDRGG---VFALMGPTGVGKTTTTAKLAARCVMRH 284 (484)
T ss_pred hccCccccccCCc---EEEEECCCCccHHHHHHHHHHHHHHhc
Confidence 4556666777888 99999999999999999999987 443
No 491
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.42 E-value=0.00019 Score=72.35 Aligned_cols=62 Identities=16% Similarity=0.051 Sum_probs=44.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEE---CCeecCc-------cccccccCCCCCC----ccchHHHHHHh
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-------RIIDGNFDDPRLT----DYDTLLENIRG 129 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-P~sG~I~l---Dg~~~~~-------~~ig~vfQ~p~l~----~~~tv~enL~~ 129 (465)
+++++|+||+|||||++.|.|.. +..|.++. .|.+.++ ...+++.|.|.+- ...+..+....
T Consensus 163 ~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 239 (287)
T cd01854 163 TSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEELAHY 239 (287)
T ss_pred eEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHHHHHH
Confidence 89999999999999999999998 78888876 3433321 1256788888762 34454544443
No 492
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.41 E-value=0.00015 Score=77.19 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=42.0
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCe---eEEEECCeec
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI---AVITMDNYND 103 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~s---G~I~lDg~~~ 103 (465)
..+++.+ +.+.+|+ .++|.|+||+|||||+++|+++. |+. |.|.+.|...
T Consensus 163 iraID~l-l~I~~Gq---ri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev 216 (455)
T PRK07960 163 VRAINAL-LTVGRGQ---RMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREV 216 (455)
T ss_pred ceeeeec-ccccCCc---EEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEH
Confidence 3466655 8999999 99999999999999999999998 764 7777777654
No 493
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.40 E-value=0.00026 Score=74.89 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=43.2
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~ 101 (465)
+..+++.+ +.+.+|+ .++|.|+||+|||||+++|++.. |+.+.+...|.
T Consensus 124 Gi~~id~l-~~i~~Gq---~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGe 173 (411)
T TIGR03496 124 GVRAINGL-LTVGRGQ---RMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGE 173 (411)
T ss_pred eEEeecce-EEEecCc---EEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEec
Confidence 46788888 9999999 99999999999999999999998 88777665554
No 494
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.40 E-value=0.0001 Score=68.47 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=27.2
Q ss_pred EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 52 aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
+|+++++...++. ++|+|++|||||||++.+.+-
T Consensus 9 ~~~~~~~~~~~~k----i~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 9 VLSSLGLYNKEAK----ILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred HHHHhhcccCCCE----EEEECCCCCCHHHHHHHHhcC
Confidence 3556666656655 699999999999999999873
No 495
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.40 E-value=0.00013 Score=67.50 Aligned_cols=25 Identities=36% Similarity=0.713 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMPS 92 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP~ 92 (465)
+++|+||||||||||++.|++..|.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 8999999999999999999998743
No 496
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.36 E-value=0.00022 Score=64.86 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+.++|+|++|||||||++.+.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 457999999999999999999996
No 497
>PRK00098 GTPase RsgA; Reviewed
Probab=97.36 E-value=0.0003 Score=71.25 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=42.0
Q ss_pred cCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEE---CCeecCc-------cccccccCCCCCC
Q 012357 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-------RIIDGNFDDPRLT 118 (465)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~l---Dg~~~~~-------~~ig~vfQ~p~l~ 118 (465)
+|. +++++|+||+|||||++.|.+.. +..|.|+. .|.+.++ ...+++.|.|.+.
T Consensus 163 ~gk---~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~ 227 (298)
T PRK00098 163 AGK---VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFS 227 (298)
T ss_pred cCc---eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcC
Confidence 477 99999999999999999999988 78898887 4555442 1245777777654
No 498
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.36 E-value=0.00018 Score=66.63 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=32.7
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCeec
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYND 103 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--P~sG~I~lDg~~~ 103 (465)
++|. ++.|.|++||||||+++.|...+ +..+.+.+|+..+
T Consensus 5 ~~~~---~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 5 PNGY---VIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCC---EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 3455 99999999999999999999887 4567788876443
No 499
>PRK05922 type III secretion system ATPase; Validated
Probab=97.34 E-value=0.00028 Score=74.88 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=42.3
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~ 101 (465)
..+++.+ +.+.+|+ .++|.|+||+|||||+++|++.. ++.|.+...|.
T Consensus 145 Ir~ID~l-l~I~~Gq---rigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGe 193 (434)
T PRK05922 145 IKAIDAF-LTLGKGQ---RIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGE 193 (434)
T ss_pred ceeecce-EEEcCCc---EEEEECCCCCChHHHHHHHhccCCCCceEEEEeCC
Confidence 4577776 9999999 99999999999999999999998 88888877654
No 500
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.27 E-value=0.00026 Score=75.14 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=43.8
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~ 102 (465)
..+++++ +.+.+|+ .++|+|+||+|||||+++|++.. ++.+.|...|..
T Consensus 145 i~aid~l-~~i~~Gq---~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGer 194 (434)
T PRK08472 145 VKSIDGL-LTCGKGQ---KLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGER 194 (434)
T ss_pred hHHhhhc-ceecCCC---EEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCcc
Confidence 4588999 9999999 99999999999999999999888 788888877754
Done!