Query 012357
Match_columns 465
No_of_seqs 474 out of 2437
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 07:52:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 7.3E-35 2.5E-39 298.8 17.2 258 40-340 27-324 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 8.4E-30 2.9E-34 260.9 16.7 188 40-235 7-226 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 7.7E-30 2.6E-34 263.0 16.0 188 40-235 6-221 (381)
4 1b0u_A Histidine permease; ABC 100.0 9.8E-30 3.4E-34 250.0 14.7 188 40-235 9-240 (262)
5 2olj_A Amino acid ABC transpor 100.0 2E-29 6.9E-34 248.1 14.6 188 40-235 27-246 (263)
6 1ji0_A ABC transporter; ATP bi 100.0 2.7E-29 9.4E-34 243.6 15.2 188 40-235 9-226 (240)
7 3tif_A Uncharacterized ABC tra 100.0 2.9E-29 9.8E-34 242.8 14.0 187 40-235 4-232 (235)
8 4g1u_C Hemin import ATP-bindin 100.0 5.8E-29 2E-33 245.1 15.8 193 40-235 14-235 (266)
9 2pcj_A ABC transporter, lipopr 100.0 5.4E-29 1.8E-33 239.1 14.7 183 40-231 7-222 (224)
10 2yyz_A Sugar ABC transporter, 100.0 8E-29 2.7E-33 253.9 16.1 188 40-235 6-221 (359)
11 3gfo_A Cobalt import ATP-bindi 100.0 2.4E-29 8.4E-34 249.1 11.0 188 40-235 10-231 (275)
12 1vpl_A ABC transporter, ATP-bi 100.0 6E-29 2.1E-33 243.8 13.3 188 40-235 18-233 (256)
13 1v43_A Sugar-binding transport 100.0 1.2E-28 4.3E-33 253.6 15.7 188 40-235 14-229 (372)
14 2it1_A 362AA long hypothetical 100.0 1E-28 3.5E-33 253.3 14.6 188 40-235 6-221 (362)
15 1g29_1 MALK, maltose transport 100.0 1.9E-28 6.4E-33 252.3 16.1 188 40-235 6-227 (372)
16 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-28 3.9E-33 251.8 14.3 187 40-235 4-215 (348)
17 1g6h_A High-affinity branched- 100.0 6.1E-29 2.1E-33 243.5 11.7 187 40-234 10-239 (257)
18 1z47_A CYSA, putative ABC-tran 100.0 8.6E-29 3E-33 253.2 12.5 188 40-235 17-233 (355)
19 1oxx_K GLCV, glucose, ABC tran 100.0 1.3E-28 4.5E-33 251.9 11.1 188 40-235 6-228 (353)
20 2onk_A Molybdate/tungstate ABC 100.0 7.1E-28 2.4E-32 234.0 15.6 185 40-235 4-214 (240)
21 3nh6_A ATP-binding cassette SU 99.9 3.4E-28 1.2E-32 244.3 12.6 220 7-236 20-276 (306)
22 2yz2_A Putative ABC transporte 99.9 1.4E-27 4.7E-32 235.1 11.6 187 40-235 5-225 (266)
23 2ihy_A ABC transporter, ATP-bi 99.9 6.1E-28 2.1E-32 239.4 8.7 188 40-235 24-250 (279)
24 2ixe_A Antigen peptide transpo 99.9 3.2E-27 1.1E-31 233.2 12.7 186 40-235 19-243 (271)
25 2ff7_A Alpha-hemolysin translo 99.9 3.7E-27 1.3E-31 229.8 12.2 187 38-235 8-230 (247)
26 2d2e_A SUFC protein; ABC-ATPas 99.9 3.9E-27 1.3E-31 229.8 10.8 185 40-232 6-228 (250)
27 1mv5_A LMRA, multidrug resista 99.9 5.3E-27 1.8E-31 227.8 11.4 185 40-235 4-224 (243)
28 2nq2_C Hypothetical ABC transp 99.9 9.8E-27 3.3E-31 227.6 13.0 181 40-235 7-215 (253)
29 2qi9_C Vitamin B12 import ATP- 99.9 8.5E-27 2.9E-31 227.6 9.2 182 41-235 8-220 (249)
30 2zu0_C Probable ATP-dependent 99.9 2.8E-26 9.6E-31 226.0 10.6 188 40-235 23-252 (267)
31 3gd7_A Fusion complex of cysti 99.9 5.6E-27 1.9E-31 242.6 5.1 187 39-235 21-240 (390)
32 2pjz_A Hypothetical protein ST 99.9 4.6E-26 1.6E-30 224.2 10.8 185 40-235 4-213 (263)
33 1sgw_A Putative ABC transporte 99.9 1.9E-26 6.6E-31 220.3 7.8 171 39-219 12-204 (214)
34 2pze_A Cystic fibrosis transme 99.9 8.2E-26 2.8E-30 217.7 11.6 180 40-235 9-216 (229)
35 2cbz_A Multidrug resistance-as 99.9 3.4E-26 1.2E-30 221.5 7.2 180 40-235 6-215 (237)
36 2ghi_A Transport protein; mult 99.9 5.4E-26 1.9E-30 223.1 8.5 187 39-235 19-240 (260)
37 2yl4_A ATP-binding cassette SU 99.9 1.3E-24 4.5E-29 236.1 15.9 188 39-236 343-569 (595)
38 3qf4_A ABC transporter, ATP-bi 99.9 2.2E-25 7.7E-30 241.9 9.7 189 38-236 342-565 (587)
39 3b5x_A Lipid A export ATP-bind 99.9 8.6E-25 2.9E-29 236.9 13.8 188 39-236 343-566 (582)
40 4a82_A Cystic fibrosis transme 99.9 3.4E-25 1.2E-29 240.0 8.7 188 39-236 341-563 (578)
41 3qf4_B Uncharacterized ABC tra 99.9 5.1E-25 1.7E-29 239.5 8.9 188 39-236 356-577 (598)
42 3b60_A Lipid A export ATP-bind 99.9 9.2E-25 3.1E-29 236.7 10.3 188 39-236 343-566 (582)
43 2bbs_A Cystic fibrosis transme 99.9 9.6E-24 3.3E-28 210.4 8.3 176 41-235 44-245 (290)
44 4f4c_A Multidrug resistance pr 99.9 4.6E-24 1.6E-28 250.2 3.8 190 38-236 1077-1303(1321)
45 3g5u_A MCG1178, multidrug resi 99.9 9E-23 3.1E-27 238.7 10.7 189 38-236 388-612 (1284)
46 3g5u_A MCG1178, multidrug resi 99.9 1.1E-22 3.8E-27 237.9 8.5 189 38-236 1031-1257(1284)
47 4f4c_A Multidrug resistance pr 99.9 1E-22 3.4E-27 238.9 7.7 216 11-236 385-640 (1321)
48 1yqt_A RNAse L inhibitor; ATP- 99.8 5.7E-21 2E-25 205.4 13.1 180 41-235 291-491 (538)
49 3bk7_A ABC transporter ATP-bin 99.8 8.2E-21 2.8E-25 206.7 11.5 181 40-235 360-561 (607)
50 3ozx_A RNAse L inhibitor; ATP 99.8 3.1E-20 1.1E-24 199.6 15.4 170 40-223 272-461 (538)
51 1yqt_A RNAse L inhibitor; ATP- 99.8 1.4E-20 4.8E-25 202.3 6.6 178 38-224 22-234 (538)
52 3j16_B RLI1P; ribosome recycli 99.8 9.5E-20 3.3E-24 198.3 11.4 180 41-235 350-557 (608)
53 3bk7_A ABC transporter ATP-bin 99.8 4.4E-20 1.5E-24 201.0 7.3 175 41-224 95-304 (607)
54 2iw3_A Elongation factor 3A; a 99.8 4.1E-19 1.4E-23 201.1 13.8 177 40-235 438-633 (986)
55 2iw3_A Elongation factor 3A; a 99.8 4.8E-20 1.6E-24 208.7 6.2 180 40-231 674-981 (986)
56 3ux8_A Excinuclease ABC, A sub 99.8 7.5E-20 2.6E-24 201.2 7.0 178 49-235 30-296 (670)
57 3ux8_A Excinuclease ABC, A sub 99.7 4.4E-18 1.5E-22 187.1 5.6 72 158-235 549-638 (670)
58 3tqc_A Pantothenate kinase; bi 99.7 2E-19 7E-24 181.6 -6.1 204 38-241 61-309 (321)
59 2npi_A Protein CLP1; CLP1-PCF1 99.7 4.7E-19 1.6E-23 187.0 -5.6 166 55-234 130-335 (460)
60 1sq5_A Pantothenate kinase; P- 99.7 6E-18 2E-22 169.3 0.7 177 61-241 78-297 (308)
61 3j16_B RLI1P; ribosome recycli 99.7 2E-17 6.9E-22 180.0 4.4 175 41-224 81-297 (608)
62 3ozx_A RNAse L inhibitor; ATP 99.6 6.9E-17 2.4E-21 173.6 6.0 154 61-224 23-213 (538)
63 3c8u_A Fructokinase; YP_612366 99.6 1.1E-16 3.8E-21 150.4 2.7 172 61-238 20-206 (208)
64 3b9q_A Chloroplast SRP recepto 99.6 4.1E-16 1.4E-20 156.0 3.7 161 53-226 90-284 (302)
65 3asz_A Uridine kinase; cytidin 99.6 1.1E-15 3.7E-20 143.0 3.7 177 61-241 4-188 (211)
66 3pih_A Uvrabc system protein A 99.6 4.6E-15 1.6E-19 167.6 9.2 73 158-236 811-901 (916)
67 2jeo_A Uridine-cytidine kinase 99.5 9.1E-16 3.1E-20 147.9 2.4 182 46-239 8-214 (245)
68 2og2_A Putative signal recogni 99.5 2.5E-15 8.7E-20 153.8 4.4 159 54-225 148-340 (359)
69 2vf7_A UVRA2, excinuclease ABC 99.5 5.5E-15 1.9E-19 165.7 7.2 72 158-235 736-825 (842)
70 2r6f_A Excinuclease ABC subuni 99.5 7E-15 2.4E-19 165.8 6.8 72 158-235 851-940 (972)
71 3aez_A Pantothenate kinase; tr 99.5 4.3E-15 1.5E-19 149.3 3.3 168 60-241 87-300 (312)
72 2ygr_A Uvrabc system protein A 99.5 1.4E-14 4.9E-19 163.7 7.5 72 158-235 869-958 (993)
73 3b85_A Phosphate starvation-in 99.5 1.6E-16 5.4E-21 150.8 -7.2 135 47-206 10-151 (208)
74 4aby_A DNA repair protein RECN 99.5 7.3E-14 2.5E-18 143.9 9.6 65 158-228 301-379 (415)
75 4gp7_A Metallophosphoesterase; 99.5 2.4E-15 8.3E-20 137.4 -1.7 115 55-192 1-118 (171)
76 1tq4_A IIGP1, interferon-induc 99.4 2.9E-15 9.8E-20 156.0 -7.8 141 50-197 36-206 (413)
77 1znw_A Guanylate kinase, GMP k 99.4 3.7E-15 1.3E-19 139.9 -6.9 162 50-222 9-202 (207)
78 2dpy_A FLII, flagellum-specifi 99.4 1E-14 3.5E-19 153.0 -5.1 173 41-235 135-342 (438)
79 2pt7_A CAG-ALFA; ATPase, prote 99.3 2.4E-14 8.4E-19 144.8 -3.5 125 51-224 159-290 (330)
80 1htw_A HI0065; nucleotide-bind 99.3 9.6E-15 3.3E-19 132.8 -6.5 85 41-129 11-97 (158)
81 2v9p_A Replication protein E1; 99.3 6.6E-16 2.2E-20 154.9 -15.7 158 40-235 104-264 (305)
82 2ga8_A Hypothetical 39.9 kDa p 99.3 2.2E-14 7.5E-19 146.3 -4.9 143 94-238 157-349 (359)
83 1z6g_A Guanylate kinase; struc 99.3 2.5E-14 8.6E-19 135.9 -4.2 65 50-120 10-82 (218)
84 1odf_A YGR205W, hypothetical 3 99.3 2.5E-13 8.5E-18 135.1 2.0 172 65-238 30-274 (290)
85 3sop_A Neuronal-specific septi 99.3 8.4E-14 2.9E-18 137.1 -1.8 125 67-201 3-138 (270)
86 1ye8_A Protein THEP1, hypothet 99.3 1.6E-12 5.5E-17 120.1 3.3 125 68-217 2-152 (178)
87 3szr_A Interferon-induced GTP- 99.2 1.5E-12 5.1E-17 141.8 3.1 148 68-235 47-235 (608)
88 2eyu_A Twitching motility prot 99.2 7.9E-13 2.7E-17 129.5 0.2 124 51-222 15-146 (261)
89 4a74_A DNA repair and recombin 99.2 1.5E-12 5.2E-17 122.1 1.7 143 59-224 21-200 (231)
90 1rj9_A FTSY, signal recognitio 99.2 1.6E-11 5.4E-16 122.9 7.5 116 62-189 101-235 (304)
91 1a7j_A Phosphoribulokinase; tr 99.2 4.6E-13 1.6E-17 133.0 -3.8 169 66-235 5-204 (290)
92 2ehv_A Hypothetical protein PH 99.2 2.4E-12 8.2E-17 122.3 0.6 149 59-223 26-207 (251)
93 1tf7_A KAIC; homohexamer, hexa 99.2 6.1E-13 2.1E-17 142.2 -4.0 156 48-225 23-211 (525)
94 3qf7_A RAD50; ABC-ATPase, ATPa 99.2 2E-11 6.8E-16 125.0 7.0 70 158-228 285-364 (365)
95 1uj2_A Uridine-cytidine kinase 99.2 6.7E-12 2.3E-16 121.2 3.1 174 64-238 20-211 (252)
96 2o8b_B DNA mismatch repair pro 99.2 5.3E-12 1.8E-16 144.6 1.6 149 43-227 761-930 (1022)
97 1rz3_A Hypothetical protein rb 99.1 1.4E-12 4.7E-17 121.9 -4.0 168 61-240 20-200 (201)
98 1cr0_A DNA primase/helicase; R 99.1 1.2E-11 4.2E-16 121.8 2.6 46 51-99 23-70 (296)
99 1e69_A Chromosome segregation 99.0 2E-10 7E-15 115.1 7.6 66 158-224 225-299 (322)
100 3thx_A DNA mismatch repair pro 98.9 4.4E-10 1.5E-14 127.5 5.2 147 49-237 648-813 (934)
101 2qnr_A Septin-2, protein NEDD5 98.9 1.2E-10 3.9E-15 116.2 -0.1 77 41-127 2-84 (301)
102 2yhs_A FTSY, cell division pro 98.9 3.6E-10 1.2E-14 119.8 3.4 77 53-132 283-373 (503)
103 3jvv_A Twitching mobility prot 98.9 1.8E-10 6E-15 117.8 0.9 120 59-224 119-246 (356)
104 2gza_A Type IV secretion syste 98.9 1.7E-10 5.9E-15 117.8 0.2 76 53-131 165-249 (361)
105 1tf7_A KAIC; homohexamer, hexa 98.9 3.1E-10 1.1E-14 121.2 2.2 141 57-225 275-444 (525)
106 3e70_C DPA, signal recognition 98.9 8.9E-10 3E-14 111.4 5.0 68 61-131 127-208 (328)
107 1ewq_A DNA mismatch repair pro 98.9 3.1E-10 1.1E-14 126.4 0.7 122 48-207 564-691 (765)
108 2i3b_A HCR-ntpase, human cance 98.9 1.3E-11 4.5E-16 115.2 -9.0 47 68-115 3-54 (189)
109 2qag_B Septin-6, protein NEDD5 98.8 2.5E-10 8.7E-15 119.1 -0.7 154 44-207 22-212 (427)
110 2qm8_A GTPase/ATPase; G protei 98.8 1.1E-10 3.8E-15 118.2 -4.2 75 42-119 34-120 (337)
111 1wb9_A DNA mismatch repair pro 98.8 8.7E-10 3E-14 123.4 1.7 150 48-236 593-757 (800)
112 3tr0_A Guanylate kinase, GMP k 98.8 7.7E-10 2.6E-14 102.1 0.9 64 57-126 1-71 (205)
113 4e22_A Cytidylate kinase; P-lo 98.8 2.1E-10 7.1E-15 111.1 -3.4 170 61-239 25-226 (252)
114 2qag_C Septin-7; cell cycle, c 98.7 5.1E-10 1.7E-14 116.7 -2.2 135 41-192 15-157 (418)
115 3euj_A Chromosome partition pr 98.7 1.9E-09 6.4E-14 114.2 2.0 51 50-104 17-68 (483)
116 1pzn_A RAD51, DNA repair and r 98.7 1.3E-09 4.3E-14 111.0 0.5 117 52-191 119-247 (349)
117 2w0m_A SSO2452; RECA, SSPF, un 98.7 3.9E-10 1.3E-14 105.3 -3.2 48 51-101 10-59 (235)
118 2ewv_A Twitching motility prot 98.7 1.3E-09 4.4E-14 111.8 0.4 100 60-207 133-237 (372)
119 2obl_A ESCN; ATPase, hydrolase 98.7 2.6E-09 9E-14 108.7 2.1 174 41-236 49-254 (347)
120 1s96_A Guanylate kinase, GMP k 98.7 2.6E-09 8.7E-14 101.8 1.2 61 59-122 12-78 (219)
121 1zp6_A Hypothetical protein AT 98.7 5.2E-09 1.8E-13 95.6 3.1 66 59-130 5-75 (191)
122 1u0l_A Probable GTPase ENGC; p 98.7 2.8E-09 9.7E-14 106.0 0.1 58 58-118 164-232 (301)
123 2bbw_A Adenylate kinase 4, AK4 98.7 1.5E-09 5.1E-14 104.1 -2.0 62 68-129 29-97 (246)
124 1lw7_A Transcriptional regulat 98.6 7.6E-10 2.6E-14 112.7 -5.6 43 53-98 158-207 (365)
125 1pui_A ENGB, probable GTP-bind 98.6 4.5E-09 1.5E-13 97.0 -0.9 52 41-98 7-64 (210)
126 1p9r_A General secretion pathw 98.6 4.4E-09 1.5E-13 109.6 -1.7 85 42-131 148-259 (418)
127 3thx_B DNA mismatch repair pro 98.5 1.6E-08 5.5E-13 114.6 2.1 39 49-90 659-697 (918)
128 2yv5_A YJEQ protein; hydrolase 98.5 3.2E-08 1.1E-12 98.5 3.6 63 60-127 162-240 (302)
129 1t9h_A YLOQ, probable GTPase E 98.5 2E-08 6.8E-13 100.6 1.6 67 58-128 168-248 (307)
130 3lnc_A Guanylate kinase, GMP k 98.5 9E-09 3.1E-13 97.6 -2.0 39 50-91 14-53 (231)
131 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 1.3E-08 4.5E-13 105.2 -1.9 151 60-231 17-207 (392)
132 1n0w_A DNA repair protein RAD5 98.4 1.3E-07 4.5E-12 89.0 5.0 40 60-102 21-68 (243)
133 4eun_A Thermoresistant glucoki 98.4 3.9E-08 1.4E-12 91.2 1.2 66 58-129 24-95 (200)
134 3qkt_A DNA double-strand break 98.4 1.5E-07 5.2E-12 94.9 5.3 58 160-222 262-327 (339)
135 2cvh_A DNA repair and recombin 98.4 1.3E-07 4.3E-12 87.8 4.0 38 59-100 16-53 (220)
136 2bdt_A BH3686; alpha-beta prot 98.4 6.9E-08 2.3E-12 88.3 1.5 61 68-130 4-65 (189)
137 1yem_A Hypothetical protein; s 98.4 1.1E-06 3.8E-11 81.2 9.5 141 261-409 18-171 (179)
138 2j41_A Guanylate kinase; GMP, 98.3 2.1E-07 7.1E-12 85.6 3.7 33 59-94 2-35 (207)
139 1qhl_A Protein (cell division 98.3 1.4E-08 4.7E-13 97.5 -5.2 42 58-103 23-65 (227)
140 3uie_A Adenylyl-sulfate kinase 98.3 2.3E-08 7.9E-13 92.8 -3.5 60 41-103 3-64 (200)
141 1cke_A CK, MSSA, protein (cyti 98.3 2.8E-08 9.4E-13 93.2 -3.3 65 175-240 138-205 (227)
142 2qt1_A Nicotinamide riboside k 98.3 7.5E-07 2.6E-11 82.6 5.9 43 59-104 17-59 (207)
143 2rcn_A Probable GTPase ENGC; Y 98.3 3.4E-07 1.1E-11 93.5 3.6 70 53-126 206-281 (358)
144 1nlf_A Regulatory protein REPA 98.3 2.2E-07 7.6E-12 90.6 2.1 28 60-90 27-54 (279)
145 2oap_1 GSPE-2, type II secreti 98.3 1.2E-07 4.1E-12 101.2 0.1 49 51-102 248-297 (511)
146 1oix_A RAS-related protein RAB 98.2 1.8E-06 6E-11 79.0 7.4 37 66-102 29-77 (191)
147 2x8a_A Nuclear valosin-contain 98.2 1.4E-08 4.7E-13 99.8 -8.5 74 49-128 32-113 (274)
148 3nwj_A ATSK2; P loop, shikimat 98.2 1.1E-07 3.9E-12 92.3 -2.0 47 41-90 21-72 (250)
149 2kjq_A DNAA-related protein; s 98.2 1.4E-06 4.7E-11 77.8 5.3 35 62-100 35-72 (149)
150 2vp4_A Deoxynucleoside kinase; 98.1 7.8E-08 2.7E-12 91.4 -4.0 37 60-102 17-53 (230)
151 3lda_A DNA repair protein RAD5 98.1 3.6E-07 1.2E-11 94.7 0.0 41 59-102 174-222 (400)
152 3d3q_A TRNA delta(2)-isopenten 98.1 5.6E-08 1.9E-12 98.6 -6.1 147 67-226 8-161 (340)
153 3vaa_A Shikimate kinase, SK; s 98.1 1.8E-06 6.3E-11 79.7 3.8 39 49-90 11-49 (199)
154 1udx_A The GTP-binding protein 98.1 2.4E-06 8.3E-11 88.9 4.9 45 53-100 147-203 (416)
155 2f1r_A Molybdopterin-guanine d 98.0 1E-06 3.6E-11 80.6 1.7 35 68-102 4-42 (171)
156 1zu4_A FTSY; GTPase, signal re 98.0 2E-06 6.9E-11 86.4 3.5 75 53-130 95-187 (320)
157 1knq_A Gluconate kinase; ALFA/ 98.0 7.9E-07 2.7E-11 80.0 0.4 60 61-126 6-71 (175)
158 3ghx_A Adenylate cyclase CYAB; 98.0 5.5E-06 1.9E-10 76.5 6.1 139 263-410 21-178 (179)
159 3a00_A Guanylate kinase, GMP k 98.0 2.2E-06 7.7E-11 78.4 3.0 24 68-91 3-26 (186)
160 2een_A Hypothetical protein PH 98.0 1.5E-05 5.1E-10 73.4 8.0 130 279-413 29-177 (183)
161 1sxj_E Activator 1 40 kDa subu 98.0 8.1E-06 2.8E-10 81.4 6.5 42 61-103 32-75 (354)
162 2dc4_A PH1012 protein, 165AA l 97.9 2.9E-05 9.9E-10 70.2 9.4 122 280-409 31-163 (165)
163 2f9l_A RAB11B, member RAS onco 97.9 1.6E-05 5.3E-10 72.8 6.9 37 66-102 5-53 (199)
164 1lvg_A Guanylate kinase, GMP k 97.9 4E-06 1.4E-10 77.8 2.8 28 61-91 2-29 (198)
165 1kgd_A CASK, peripheral plasma 97.9 6E-06 2.1E-10 75.2 3.9 34 62-98 4-39 (180)
166 1vma_A Cell division protein F 97.9 2E-05 6.7E-10 78.7 7.7 44 57-103 98-142 (306)
167 3kta_A Chromosome segregation 97.9 6.9E-06 2.4E-10 74.2 3.9 37 54-94 18-55 (182)
168 1in4_A RUVB, holliday junction 97.9 1.5E-07 5.1E-12 94.6 -8.0 86 42-129 23-124 (334)
169 2f6r_A COA synthase, bifunctio 97.8 2.6E-06 8.9E-11 83.7 -0.8 72 159-240 181-252 (281)
170 3ec2_A DNA replication protein 97.8 4.5E-06 1.5E-10 75.5 0.6 34 58-94 33-67 (180)
171 2zr9_A Protein RECA, recombina 97.7 7.4E-05 2.5E-09 75.8 9.4 39 59-100 57-97 (349)
172 1nij_A Hypothetical protein YJ 97.7 8.1E-06 2.8E-10 81.5 2.0 37 68-104 6-51 (318)
173 3tau_A Guanylate kinase, GMP k 97.7 1.7E-05 5.9E-10 73.9 4.1 28 61-91 6-33 (208)
174 3pih_A Uvrabc system protein A 97.7 3E-06 1E-10 96.0 -2.0 73 158-236 470-559 (916)
175 1ls1_A Signal recognition part 97.6 5.7E-06 1.9E-10 82.0 -0.5 56 41-103 80-136 (295)
176 1ixz_A ATP-dependent metallopr 97.6 2.5E-06 8.5E-11 81.5 -3.4 54 43-102 31-84 (254)
177 1kag_A SKI, shikimate kinase I 97.6 2.5E-05 8.4E-10 69.7 3.1 23 68-90 6-28 (173)
178 3cr8_A Sulfate adenylyltranfer 97.6 1.9E-05 6.4E-10 85.0 2.5 42 59-103 365-409 (552)
179 1iy2_A ATP-dependent metallopr 97.6 3.2E-06 1.1E-10 82.2 -3.4 56 41-102 53-108 (278)
180 1svm_A Large T antigen; AAA+ f 97.5 1.3E-05 4.5E-10 82.3 0.4 61 50-115 156-218 (377)
181 2pez_A Bifunctional 3'-phospho 97.5 3.5E-05 1.2E-09 69.5 2.3 39 62-103 4-44 (179)
182 3ney_A 55 kDa erythrocyte memb 97.5 5.8E-05 2E-09 70.7 3.8 29 60-91 16-44 (197)
183 1w1w_A Structural maintenance 97.4 8.4E-05 2.9E-09 77.0 4.7 32 59-93 22-54 (430)
184 1jjv_A Dephospho-COA kinase; P 97.4 6.8E-05 2.3E-09 69.1 3.6 23 67-89 3-25 (206)
185 3n10_A Adenylate cyclase 2; CY 97.4 0.00044 1.5E-08 63.2 8.4 121 280-409 41-177 (179)
186 2p67_A LAO/AO transport system 97.4 6.4E-06 2.2E-10 83.1 -4.4 51 48-101 41-92 (341)
187 1m7g_A Adenylylsulfate kinase; 97.3 5E-05 1.7E-09 70.6 1.6 41 60-103 22-65 (211)
188 3k1j_A LON protease, ATP-depen 97.3 3.3E-05 1.1E-09 83.8 -0.5 60 40-102 37-98 (604)
189 1y63_A LMAJ004144AAA protein; 97.3 0.00014 4.8E-09 66.2 3.7 43 55-100 2-44 (184)
190 2o5v_A DNA replication and rep 97.3 8.6E-05 3E-09 75.7 2.4 77 159-235 272-354 (359)
191 2if2_A Dephospho-COA kinase; a 97.3 0.00012 4.3E-09 67.1 3.2 31 68-100 3-33 (204)
192 3m6a_A ATP-dependent protease 97.2 1.5E-05 5.2E-10 85.4 -3.9 53 46-102 92-145 (543)
193 2qor_A Guanylate kinase; phosp 97.2 0.00016 5.6E-09 66.7 3.2 29 60-91 9-37 (204)
194 3hr8_A Protein RECA; alpha and 97.2 0.00015 5E-09 74.0 3.0 65 60-127 58-128 (356)
195 2px0_A Flagellar biosynthesis 97.2 0.00011 3.9E-09 72.7 2.1 31 61-94 103-134 (296)
196 4eaq_A DTMP kinase, thymidylat 97.2 0.00016 5.4E-09 68.8 3.0 43 52-97 12-57 (229)
197 2www_A Methylmalonic aciduria 97.1 0.00013 4.3E-09 73.9 2.2 37 67-103 75-112 (349)
198 3t61_A Gluconokinase; PSI-biol 97.1 0.00016 5.5E-09 66.4 2.6 23 68-90 20-42 (202)
199 1m2o_B GTP-binding protein SAR 97.1 0.00036 1.2E-08 63.3 4.7 35 51-89 12-46 (190)
200 2ygr_A Uvrabc system protein A 97.1 0.00018 6.2E-09 81.8 2.8 72 159-236 528-616 (993)
201 2dr3_A UPF0273 protein PH0284; 97.1 0.00034 1.2E-08 65.4 4.4 42 57-101 17-60 (247)
202 2r6f_A Excinuclease ABC subuni 97.1 0.00017 5.8E-09 81.8 2.5 71 159-235 511-598 (972)
203 2ffh_A Protein (FFH); SRP54, s 97.0 8.6E-05 2.9E-09 77.4 -0.3 56 40-102 79-135 (425)
204 1mky_A Probable GTP-binding pr 97.0 0.00077 2.6E-08 70.0 6.9 38 65-102 179-229 (439)
205 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00034 1.2E-08 62.0 3.5 23 68-90 25-47 (149)
206 3lw7_A Adenylate kinase relate 97.0 0.0003 1E-08 61.7 3.1 23 67-90 2-24 (179)
207 1uf9_A TT1252 protein; P-loop, 97.0 0.00034 1.2E-08 63.6 3.6 25 65-89 7-31 (203)
208 3kb2_A SPBC2 prophage-derived 97.0 0.00034 1.2E-08 61.7 3.3 23 68-90 3-25 (173)
209 1ly1_A Polynucleotide kinase; 97.0 0.0004 1.4E-08 61.8 3.7 23 66-88 2-24 (181)
210 1vht_A Dephospho-COA kinase; s 97.0 0.00038 1.3E-08 64.6 3.7 23 66-88 4-26 (218)
211 3ice_A Transcription terminati 97.0 0.00017 5.9E-09 74.3 1.3 74 12-90 110-198 (422)
212 2yvu_A Probable adenylyl-sulfa 97.0 0.00026 8.9E-09 64.1 2.2 37 61-100 11-49 (186)
213 1qhx_A CPT, protein (chloramph 96.9 0.0004 1.4E-08 62.0 3.3 24 68-91 5-28 (178)
214 2p5t_B PEZT; postsegregational 96.9 0.00034 1.2E-08 67.1 2.8 37 65-102 31-67 (253)
215 1f6b_A SAR1; gtpases, N-termin 96.9 0.00013 4.3E-09 66.9 -0.4 34 51-88 14-47 (198)
216 1sxj_C Activator 1 40 kDa subu 96.9 4.4E-05 1.5E-09 76.2 -3.8 53 40-93 21-74 (340)
217 1np6_A Molybdopterin-guanine d 96.9 0.00054 1.8E-08 62.7 3.8 33 68-100 8-44 (174)
218 2wjg_A FEOB, ferrous iron tran 96.9 0.00081 2.8E-08 60.0 4.8 24 66-89 7-30 (188)
219 2ze6_A Isopentenyl transferase 96.8 0.0006 2E-08 65.6 3.8 33 68-101 3-35 (253)
220 3cm0_A Adenylate kinase; ATP-b 96.8 0.00054 1.9E-08 61.6 3.0 23 68-90 6-28 (186)
221 1tev_A UMP-CMP kinase; ploop, 96.8 0.00067 2.3E-08 61.0 3.6 25 66-90 3-27 (196)
222 1gvn_B Zeta; postsegregational 96.7 0.00086 2.9E-08 65.9 4.0 35 65-100 32-66 (287)
223 1j8m_F SRP54, signal recogniti 96.7 0.00029 9.9E-09 69.8 0.4 46 54-103 89-136 (297)
224 3r20_A Cytidylate kinase; stru 96.7 0.00077 2.6E-08 64.6 3.4 64 174-238 142-208 (233)
225 2jaq_A Deoxyguanosine kinase; 96.7 0.00085 2.9E-08 60.8 3.4 23 68-90 2-24 (205)
226 2rhm_A Putative kinase; P-loop 96.7 0.00087 3E-08 60.4 3.4 25 66-90 5-29 (193)
227 1kht_A Adenylate kinase; phosp 96.7 0.00096 3.3E-08 59.8 3.6 23 68-90 5-27 (192)
228 2wji_A Ferrous iron transport 96.7 0.00092 3.2E-08 58.9 3.4 24 67-90 4-27 (165)
229 2vf7_A UVRA2, excinuclease ABC 96.7 0.0007 2.4E-08 76.1 3.2 71 159-235 386-473 (842)
230 1gtv_A TMK, thymidylate kinase 96.7 0.00042 1.4E-08 63.7 1.2 23 68-90 2-24 (214)
231 1q3t_A Cytidylate kinase; nucl 96.6 0.0011 3.9E-08 62.5 3.7 27 61-90 14-40 (236)
232 1f2t_B RAD50 ABC-ATPase; DNA d 96.6 0.00079 2.7E-08 60.0 2.3 59 158-222 63-136 (148)
233 1via_A Shikimate kinase; struc 96.6 0.00095 3.2E-08 59.7 2.9 23 68-90 6-28 (175)
234 2c95_A Adenylate kinase 1; tra 96.6 0.001 3.6E-08 60.0 3.2 23 68-90 11-33 (196)
235 2plr_A DTMP kinase, probable t 96.6 0.0013 4.4E-08 60.0 3.7 25 67-91 5-29 (213)
236 2bwj_A Adenylate kinase 5; pho 96.5 0.0011 3.8E-08 59.9 3.2 24 67-90 13-36 (199)
237 3qks_A DNA double-strand break 96.5 0.0011 3.9E-08 61.6 3.3 23 68-90 25-47 (203)
238 2qtf_A Protein HFLX, GTP-bindi 96.5 0.0021 7.1E-08 65.4 5.5 36 68-103 181-228 (364)
239 3ake_A Cytidylate kinase; CMP 96.5 0.0012 4.1E-08 60.2 3.4 23 68-90 4-26 (208)
240 1ukz_A Uridylate kinase; trans 96.5 0.0014 4.8E-08 59.9 3.6 33 66-99 15-47 (203)
241 2v54_A DTMP kinase, thymidylat 96.5 0.0016 5.4E-08 59.3 3.9 23 68-90 6-28 (204)
242 3trf_A Shikimate kinase, SK; a 96.5 0.0015 5.1E-08 58.7 3.6 23 68-90 7-29 (185)
243 1qf9_A UMP/CMP kinase, protein 96.5 0.0014 4.7E-08 58.7 3.4 25 66-90 6-30 (194)
244 2z0h_A DTMP kinase, thymidylat 96.5 0.0013 4.5E-08 59.4 3.3 23 68-90 2-24 (197)
245 1nks_A Adenylate kinase; therm 96.5 0.0014 4.8E-08 58.7 3.4 23 68-90 3-25 (194)
246 2grj_A Dephospho-COA kinase; T 96.5 0.0015 5.1E-08 60.5 3.6 35 66-101 12-46 (192)
247 2dhr_A FTSH; AAA+ protein, hex 96.5 0.00088 3E-08 71.1 2.3 47 51-103 54-100 (499)
248 1nn5_A Similar to deoxythymidy 96.5 0.0013 4.4E-08 60.3 3.1 23 68-90 11-33 (215)
249 2vli_A Antibiotic resistance p 96.5 0.00095 3.3E-08 59.7 2.1 24 67-90 6-29 (183)
250 3llm_A ATP-dependent RNA helic 96.5 0.00096 3.3E-08 62.9 2.2 58 61-130 74-132 (235)
251 2o5v_A DNA replication and rep 96.5 0.001 3.5E-08 67.7 2.5 33 52-88 16-48 (359)
252 1ex7_A Guanylate kinase; subst 96.4 0.0016 5.4E-08 60.2 3.4 24 69-92 4-27 (186)
253 2pbr_A DTMP kinase, thymidylat 96.4 0.0016 5.4E-08 58.5 3.3 32 68-99 2-35 (195)
254 1xjc_A MOBB protein homolog; s 96.4 0.0013 4.4E-08 60.0 2.6 33 67-99 5-41 (169)
255 2wwf_A Thymidilate kinase, put 96.4 0.0017 5.9E-08 59.4 3.5 23 68-90 12-34 (212)
256 1ega_A Protein (GTP-binding pr 96.4 0.0011 3.8E-08 65.4 2.4 23 68-90 10-32 (301)
257 2cdn_A Adenylate kinase; phosp 96.4 0.0016 5.6E-08 59.5 3.3 27 64-90 18-44 (201)
258 3tlx_A Adenylate kinase 2; str 96.4 0.0018 6.1E-08 61.8 3.6 26 65-90 28-53 (243)
259 3iij_A Coilin-interacting nucl 96.4 0.0016 5.6E-08 58.3 3.1 23 68-90 13-35 (180)
260 2gj8_A MNME, tRNA modification 96.4 0.0017 5.9E-08 57.8 3.2 23 68-90 6-28 (172)
261 3fb4_A Adenylate kinase; psych 96.4 0.0017 5.9E-08 59.9 3.3 23 68-90 2-24 (216)
262 2ohf_A Protein OLA1, GTP-bindi 96.3 0.002 7E-08 66.4 4.0 37 61-100 20-68 (396)
263 3t34_A Dynamin-related protein 96.3 0.001 3.5E-08 67.0 1.7 34 50-89 24-57 (360)
264 2iyv_A Shikimate kinase, SK; t 96.3 0.0015 5E-08 58.8 2.4 23 68-90 4-26 (184)
265 3crm_A TRNA delta(2)-isopenten 96.3 0.0031 1E-07 63.4 4.9 35 67-102 6-40 (323)
266 1zd8_A GTP:AMP phosphotransfer 96.3 0.0019 6.4E-08 60.5 3.1 24 67-90 8-31 (227)
267 2pt5_A Shikimate kinase, SK; a 96.3 0.0022 7.5E-08 56.5 3.3 23 68-90 2-24 (168)
268 3dl0_A Adenylate kinase; phosp 96.3 0.0021 7.1E-08 59.4 3.3 23 68-90 2-24 (216)
269 1e6c_A Shikimate kinase; phosp 96.2 0.0019 6.6E-08 57.1 2.8 23 68-90 4-26 (173)
270 2zej_A Dardarin, leucine-rich 96.2 0.002 6.8E-08 57.8 2.9 24 67-90 3-26 (184)
271 3cf0_A Transitional endoplasmi 96.2 0.0025 8.6E-08 62.5 3.8 37 60-100 46-82 (301)
272 4ad8_A DNA repair protein RECN 96.2 0.00082 2.8E-08 71.3 0.3 35 52-90 50-84 (517)
273 3exa_A TRNA delta(2)-isopenten 96.2 0.0041 1.4E-07 62.3 4.9 34 67-101 4-37 (322)
274 1zuh_A Shikimate kinase; alpha 96.1 0.0029 9.8E-08 56.0 3.4 23 68-90 9-31 (168)
275 1aky_A Adenylate kinase; ATP:A 96.1 0.0026 9E-08 59.0 3.3 24 67-90 5-28 (220)
276 1zak_A Adenylate kinase; ATP:A 96.1 0.0021 7.1E-08 59.8 2.5 24 67-90 6-29 (222)
277 3lxx_A GTPase IMAP family memb 96.1 0.0035 1.2E-07 59.0 4.1 27 64-90 27-53 (239)
278 1ltq_A Polynucleotide kinase; 96.1 0.0029 9.8E-08 61.5 3.4 34 66-99 2-35 (301)
279 3foz_A TRNA delta(2)-isopenten 96.1 0.0045 1.5E-07 61.9 4.8 35 66-101 10-44 (316)
280 1lv7_A FTSH; alpha/beta domain 96.0 0.0043 1.5E-07 58.9 4.2 34 68-102 47-80 (257)
281 3kl4_A SRP54, signal recogniti 96.0 0.0023 7.8E-08 66.8 2.4 35 66-100 97-132 (433)
282 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0036 1.2E-07 60.1 3.6 24 67-90 5-28 (260)
283 3auy_A DNA double-strand break 96.0 0.0044 1.5E-07 62.8 4.4 30 55-88 18-47 (371)
284 2h92_A Cytidylate kinase; ross 96.0 0.003 1E-07 58.3 2.8 25 66-90 3-27 (219)
285 1ko7_A HPR kinase/phosphatase; 96.0 0.0097 3.3E-07 59.5 6.6 38 48-89 130-167 (314)
286 3k53_A Ferrous iron transport 95.9 0.004 1.4E-07 60.0 3.4 24 67-90 4-27 (271)
287 3a8t_A Adenylate isopentenyltr 95.9 0.0066 2.2E-07 61.3 4.9 33 68-101 42-74 (339)
288 1kao_A RAP2A; GTP-binding prot 95.8 0.0054 1.9E-07 52.7 3.7 25 66-90 3-27 (167)
289 1ypw_A Transitional endoplasmi 95.8 0.0044 1.5E-07 69.4 3.8 39 59-101 234-272 (806)
290 4ad8_A DNA repair protein RECN 95.8 0.0046 1.6E-07 65.5 3.8 60 159-225 404-474 (517)
291 2ged_A SR-beta, signal recogni 95.8 0.0049 1.7E-07 55.1 3.4 25 66-90 48-72 (193)
292 2xb4_A Adenylate kinase; ATP-b 95.8 0.0047 1.6E-07 57.8 3.3 23 68-90 2-24 (223)
293 2ce2_X GTPase HRAS; signaling 95.8 0.0054 1.9E-07 52.5 3.4 24 67-90 4-27 (166)
294 3eph_A TRNA isopentenyltransfe 95.8 0.0055 1.9E-07 63.3 3.9 33 67-100 3-35 (409)
295 2z43_A DNA repair and recombin 95.7 0.0084 2.9E-07 59.5 5.2 39 59-100 103-149 (324)
296 1z2a_A RAS-related protein RAB 95.7 0.006 2.1E-07 52.7 3.6 25 66-90 5-29 (168)
297 1u8z_A RAS-related protein RAL 95.7 0.0062 2.1E-07 52.4 3.6 25 66-90 4-28 (168)
298 4dsu_A GTPase KRAS, isoform 2B 95.7 0.0064 2.2E-07 53.7 3.7 26 65-90 3-28 (189)
299 3bc1_A RAS-related protein RAB 95.7 0.0072 2.5E-07 53.5 4.0 27 64-90 9-35 (195)
300 1ky3_A GTP-binding protein YPT 95.7 0.0066 2.3E-07 53.2 3.7 25 66-90 8-32 (182)
301 2erx_A GTP-binding protein DI- 95.7 0.0067 2.3E-07 52.5 3.6 24 66-89 3-26 (172)
302 1e4v_A Adenylate kinase; trans 95.7 0.0052 1.8E-07 56.8 3.1 23 68-90 2-24 (214)
303 1c1y_A RAS-related protein RAP 95.7 0.0067 2.3E-07 52.3 3.6 25 66-90 3-27 (167)
304 1ek0_A Protein (GTP-binding pr 95.7 0.0068 2.3E-07 52.4 3.6 25 66-90 3-27 (170)
305 3ihw_A Centg3; RAS, centaurin, 95.6 0.013 4.6E-07 52.5 5.7 25 65-89 19-43 (184)
306 2lkc_A Translation initiation 95.6 0.0064 2.2E-07 53.3 3.4 25 66-90 8-32 (178)
307 1z0j_A RAB-22, RAS-related pro 95.6 0.0073 2.5E-07 52.3 3.6 25 66-90 6-30 (170)
308 2nzj_A GTP-binding protein REM 95.6 0.0069 2.4E-07 52.8 3.5 25 66-90 4-28 (175)
309 2ocp_A DGK, deoxyguanosine kin 95.6 0.0064 2.2E-07 57.3 3.5 26 66-91 2-27 (241)
310 1z08_A RAS-related protein RAB 95.6 0.0076 2.6E-07 52.3 3.7 25 66-90 6-30 (170)
311 2aca_A Putative adenylate cycl 95.6 0.014 4.9E-07 53.7 5.7 141 262-409 22-179 (189)
312 2fn4_A P23, RAS-related protei 95.6 0.0072 2.5E-07 52.9 3.5 25 65-89 8-32 (181)
313 1v5w_A DMC1, meiotic recombina 95.6 0.0098 3.4E-07 59.7 4.9 28 59-89 118-145 (343)
314 2ius_A DNA translocase FTSK; n 95.5 0.0055 1.9E-07 65.2 3.0 45 55-102 159-206 (512)
315 3con_A GTPase NRAS; structural 95.5 0.0082 2.8E-07 53.5 3.7 28 63-90 18-45 (190)
316 3umf_A Adenylate kinase; rossm 95.5 0.0075 2.6E-07 57.0 3.6 26 65-90 28-53 (217)
317 1wms_A RAB-9, RAB9, RAS-relate 95.5 0.0083 2.8E-07 52.5 3.6 26 65-90 6-31 (177)
318 3be4_A Adenylate kinase; malar 95.5 0.0068 2.3E-07 56.3 3.2 32 67-99 6-37 (217)
319 3clv_A RAB5 protein, putative; 95.5 0.0083 2.9E-07 53.3 3.7 25 66-90 7-31 (208)
320 3q85_A GTP-binding protein REM 95.5 0.008 2.7E-07 52.2 3.4 24 67-90 3-26 (169)
321 1g16_A RAS-related protein SEC 95.5 0.0079 2.7E-07 52.0 3.4 25 66-90 3-27 (170)
322 2dyk_A GTP-binding protein; GT 95.5 0.0087 3E-07 51.4 3.6 23 68-90 3-25 (161)
323 2dy1_A Elongation factor G; tr 95.5 0.0037 1.3E-07 68.6 1.5 36 58-96 4-42 (665)
324 2wsm_A Hydrogenase expression/ 95.5 0.0078 2.7E-07 55.3 3.5 25 66-90 30-54 (221)
325 1r2q_A RAS-related protein RAB 95.5 0.0086 2.9E-07 51.7 3.6 24 66-89 6-29 (170)
326 1upt_A ARL1, ADP-ribosylation 95.5 0.0087 3E-07 51.9 3.6 24 66-89 7-30 (171)
327 1svi_A GTP-binding protein YSX 95.4 0.0068 2.3E-07 54.2 2.9 25 65-89 22-46 (195)
328 3tw8_B RAS-related protein RAB 95.4 0.0072 2.5E-07 52.9 3.0 26 65-90 8-33 (181)
329 1ak2_A Adenylate kinase isoenz 95.4 0.0079 2.7E-07 56.5 3.3 24 67-90 17-40 (233)
330 3tqf_A HPR(Ser) kinase; transf 95.4 0.01 3.5E-07 54.5 3.9 34 51-88 5-38 (181)
331 1jal_A YCHF protein; nucleotid 95.4 0.011 3.7E-07 60.3 4.5 22 68-89 4-25 (363)
332 2hxs_A RAB-26, RAS-related pro 95.4 0.01 3.5E-07 52.0 3.7 24 66-89 6-29 (178)
333 3q72_A GTP-binding protein RAD 95.3 0.0068 2.3E-07 52.5 2.5 24 67-90 3-26 (166)
334 2gf0_A GTP-binding protein DI- 95.3 0.01 3.6E-07 53.0 3.8 25 65-89 7-31 (199)
335 4ag6_A VIRB4 ATPase, type IV s 95.3 0.007 2.4E-07 61.5 2.9 31 68-98 37-68 (392)
336 2oil_A CATX-8, RAS-related pro 95.3 0.011 3.9E-07 52.8 4.0 26 65-90 24-49 (193)
337 2y8e_A RAB-protein 6, GH09086P 95.3 0.0098 3.3E-07 51.9 3.4 25 66-90 14-38 (179)
338 3pqc_A Probable GTP-binding pr 95.3 0.0083 2.8E-07 53.3 3.0 25 66-90 23-47 (195)
339 1fzq_A ADP-ribosylation factor 95.3 0.0079 2.7E-07 53.7 2.8 26 65-90 15-40 (181)
340 2g6b_A RAS-related protein RAB 95.3 0.011 3.7E-07 51.9 3.6 27 64-90 8-34 (180)
341 2a9k_A RAS-related protein RAL 95.2 0.011 3.8E-07 51.9 3.6 25 66-90 18-42 (187)
342 3lxw_A GTPase IMAP family memb 95.2 0.01 3.5E-07 56.5 3.6 27 64-90 19-45 (247)
343 3zvl_A Bifunctional polynucleo 95.2 0.0083 2.9E-07 61.9 3.1 25 66-90 258-282 (416)
344 1moz_A ARL1, ADP-ribosylation 95.2 0.0061 2.1E-07 53.8 1.8 25 64-88 16-40 (183)
345 1z0f_A RAB14, member RAS oncog 95.2 0.012 4.1E-07 51.3 3.6 26 65-90 14-39 (179)
346 2xtp_A GTPase IMAP family memb 95.2 0.011 3.6E-07 56.2 3.5 27 64-90 20-46 (260)
347 1p5z_B DCK, deoxycytidine kina 95.2 0.0071 2.4E-07 57.9 2.2 28 65-92 23-50 (263)
348 3bos_A Putative DNA replicatio 95.2 0.012 4.2E-07 54.0 3.8 23 68-90 54-76 (242)
349 3b1v_A Ferrous iron uptake tra 95.1 0.011 3.7E-07 57.6 3.5 25 66-90 3-27 (272)
350 4fcw_A Chaperone protein CLPB; 95.1 0.0086 2.9E-07 58.0 2.8 27 68-94 49-76 (311)
351 2efe_B Small GTP-binding prote 95.1 0.013 4.4E-07 51.4 3.7 25 66-90 12-36 (181)
352 2bov_A RAla, RAS-related prote 95.1 0.013 4.3E-07 52.7 3.6 24 66-89 14-37 (206)
353 2bme_A RAB4A, RAS-related prot 95.1 0.012 4.2E-07 52.0 3.4 25 66-90 10-34 (186)
354 1nrj_B SR-beta, signal recogni 95.1 0.012 4E-07 53.9 3.3 26 65-90 11-36 (218)
355 2w58_A DNAI, primosome compone 95.1 0.012 4E-07 53.6 3.3 23 68-90 56-78 (202)
356 1vg8_A RAS-related protein RAB 95.1 0.013 4.6E-07 52.7 3.7 26 65-90 7-32 (207)
357 2qmh_A HPR kinase/phosphorylas 95.1 0.02 6.9E-07 53.7 4.9 44 52-101 24-67 (205)
358 2r6a_A DNAB helicase, replicat 95.0 0.0062 2.1E-07 63.4 1.5 37 51-90 191-227 (454)
359 3t5g_A GTP-binding protein RHE 95.0 0.013 4.4E-07 51.6 3.4 24 66-89 6-29 (181)
360 2qby_A CDC6 homolog 1, cell di 95.0 0.0094 3.2E-07 58.9 2.8 23 68-90 47-69 (386)
361 3kkq_A RAS-related protein M-R 95.0 0.014 4.8E-07 51.5 3.6 26 65-90 17-42 (183)
362 2qag_A Septin-2, protein NEDD5 95.0 0.0087 3E-07 60.6 2.5 23 68-90 39-61 (361)
363 3sr0_A Adenylate kinase; phosp 95.0 0.012 4.1E-07 55.0 3.2 23 68-90 2-24 (206)
364 1ksh_A ARF-like protein 2; sma 95.0 0.013 4.3E-07 52.1 3.3 25 65-89 17-41 (186)
365 1r8s_A ADP-ribosylation factor 95.0 0.012 4.2E-07 50.7 3.1 23 68-90 2-24 (164)
366 3tkl_A RAS-related protein RAB 95.0 0.014 4.8E-07 52.0 3.6 27 64-90 14-40 (196)
367 1mh1_A RAC1; GTP-binding, GTPa 95.0 0.015 5E-07 51.2 3.6 24 66-89 5-28 (186)
368 2e87_A Hypothetical protein PH 95.0 0.0096 3.3E-07 59.9 2.7 25 66-90 167-191 (357)
369 3t1o_A Gliding protein MGLA; G 95.0 0.015 5E-07 51.7 3.6 27 64-90 12-38 (198)
370 2cxx_A Probable GTP-binding pr 95.0 0.011 3.8E-07 52.3 2.8 23 68-90 3-25 (190)
371 1z06_A RAS-related protein RAB 95.0 0.015 5.1E-07 51.9 3.7 26 65-90 19-44 (189)
372 2hf9_A Probable hydrogenase ni 95.0 0.014 4.6E-07 53.8 3.5 25 66-90 38-62 (226)
373 1jbk_A CLPB protein; beta barr 95.0 0.016 5.4E-07 50.9 3.7 23 68-90 45-67 (195)
374 2fg5_A RAB-22B, RAS-related pr 95.0 0.014 4.8E-07 52.4 3.5 25 66-90 23-47 (192)
375 3dhx_A Methionine import ATP-b 94.9 0.0049 1.7E-07 51.8 0.3 37 305-341 21-57 (106)
376 2gf9_A RAS-related protein RAB 94.9 0.016 5.6E-07 51.6 3.8 26 65-90 21-46 (189)
377 1m7b_A RND3/RHOE small GTP-bin 94.9 0.015 5.2E-07 51.7 3.4 25 66-90 7-31 (184)
378 3i8s_A Ferrous iron transport 94.9 0.014 4.9E-07 56.5 3.5 25 66-90 3-27 (274)
379 2a5j_A RAS-related protein RAB 94.9 0.018 6.2E-07 51.5 3.9 26 65-90 20-45 (191)
380 3oes_A GTPase rhebl1; small GT 94.9 0.015 5.2E-07 52.6 3.4 25 66-90 24-48 (201)
381 4dhe_A Probable GTP-binding pr 94.9 0.008 2.7E-07 55.1 1.6 24 66-89 29-52 (223)
382 1x3s_A RAS-related protein RAB 94.8 0.017 5.7E-07 51.4 3.6 25 66-90 15-39 (195)
383 3b9p_A CG5977-PA, isoform A; A 94.8 0.016 5.4E-07 56.0 3.7 23 68-90 56-78 (297)
384 2xau_A PRE-mRNA-splicing facto 94.8 0.016 5.4E-07 64.6 4.1 28 60-90 106-133 (773)
385 3reg_A RHO-like small GTPase; 94.8 0.018 6E-07 51.6 3.7 28 63-90 20-47 (194)
386 1zj6_A ADP-ribosylation factor 94.8 0.017 5.6E-07 51.5 3.4 25 65-89 15-39 (187)
387 1fnn_A CDC6P, cell division co 94.8 0.018 6.1E-07 57.3 4.0 23 68-90 46-68 (389)
388 1zd9_A ADP-ribosylation factor 94.8 0.018 6.1E-07 51.5 3.6 25 66-90 22-46 (188)
389 1m8p_A Sulfate adenylyltransfe 94.8 0.01 3.4E-07 64.0 2.2 41 62-102 392-435 (573)
390 3bwd_D RAC-like GTP-binding pr 94.7 0.017 5.9E-07 50.6 3.3 25 66-90 8-32 (182)
391 2p5s_A RAS and EF-hand domain 94.7 0.019 6.5E-07 51.8 3.6 27 64-90 26-52 (199)
392 2h17_A ADP-ribosylation factor 94.7 0.016 5.3E-07 51.5 2.9 26 65-90 20-45 (181)
393 3p32_A Probable GTPase RV1496/ 94.7 0.024 8.2E-07 57.0 4.6 26 65-90 78-103 (355)
394 2atv_A RERG, RAS-like estrogen 94.7 0.02 6.9E-07 51.4 3.7 24 66-89 28-51 (196)
395 3a1s_A Iron(II) transport prot 94.6 0.019 6.5E-07 55.2 3.6 25 66-90 5-29 (258)
396 4bas_A ADP-ribosylation factor 94.6 0.017 5.7E-07 51.6 3.0 27 64-90 15-41 (199)
397 1zbd_A Rabphilin-3A; G protein 94.6 0.02 6.8E-07 51.6 3.6 25 66-90 8-32 (203)
398 2qu8_A Putative nucleolar GTP- 94.6 0.018 6E-07 53.5 3.3 27 64-90 27-53 (228)
399 2h57_A ADP-ribosylation factor 94.6 0.013 4.5E-07 52.3 2.3 26 65-90 20-45 (190)
400 3cph_A RAS-related protein SEC 94.6 0.02 7E-07 51.7 3.6 25 66-90 20-44 (213)
401 3cbq_A GTP-binding protein REM 94.6 0.014 4.7E-07 53.0 2.4 25 65-89 22-46 (195)
402 2bcg_Y Protein YP2, GTP-bindin 94.6 0.02 6.7E-07 51.8 3.4 25 66-90 8-32 (206)
403 2o52_A RAS-related protein RAB 94.6 0.019 6.4E-07 52.1 3.3 26 65-90 24-49 (200)
404 2iwr_A Centaurin gamma 1; ANK 94.5 0.017 5.9E-07 50.7 2.9 25 66-90 7-31 (178)
405 3t5d_A Septin-7; GTP-binding p 94.5 0.016 5.4E-07 55.9 2.9 24 66-89 8-31 (274)
406 1njg_A DNA polymerase III subu 94.5 0.019 6.4E-07 52.2 3.2 30 61-90 40-69 (250)
407 2fh5_B SR-beta, signal recogni 94.5 0.019 6.6E-07 52.2 3.3 25 66-90 7-31 (214)
408 3def_A T7I23.11 protein; chlor 94.5 0.02 6.7E-07 54.9 3.5 27 64-90 34-60 (262)
409 2ew1_A RAS-related protein RAB 94.5 0.02 6.9E-07 52.4 3.4 25 66-90 26-50 (201)
410 2il1_A RAB12; G-protein, GDP, 94.5 0.02 6.8E-07 51.5 3.3 25 65-89 25-49 (192)
411 3dz8_A RAS-related protein RAB 94.5 0.021 7.2E-07 51.1 3.4 25 66-90 23-47 (191)
412 2zts_A Putative uncharacterize 94.5 0.026 8.8E-07 52.4 4.1 25 60-87 27-51 (251)
413 1wf3_A GTP-binding protein; GT 94.5 0.021 7.1E-07 56.3 3.6 23 68-90 9-31 (301)
414 3c5c_A RAS-like protein 12; GD 94.4 0.024 8.3E-07 50.7 3.7 25 65-89 20-44 (187)
415 1h65_A Chloroplast outer envel 94.4 0.023 8E-07 54.5 3.7 28 63-90 36-63 (270)
416 2j1l_A RHO-related GTP-binding 94.4 0.021 7.3E-07 52.4 3.3 25 65-89 33-57 (214)
417 3iev_A GTP-binding protein ERA 94.4 0.022 7.4E-07 56.2 3.6 25 66-90 10-34 (308)
418 4edh_A DTMP kinase, thymidylat 94.4 0.023 7.7E-07 53.3 3.5 23 68-90 8-30 (213)
419 2fv8_A H6, RHO-related GTP-bin 94.4 0.023 7.9E-07 51.7 3.5 25 66-90 25-49 (207)
420 2p65_A Hypothetical protein PF 94.4 0.02 6.9E-07 50.2 3.0 23 68-90 45-67 (187)
421 2q3h_A RAS homolog gene family 94.4 0.023 8E-07 51.0 3.4 24 66-89 20-43 (201)
422 3lv8_A DTMP kinase, thymidylat 94.4 0.024 8.1E-07 54.2 3.6 26 62-90 26-51 (236)
423 2qsw_A Methionine import ATP-b 94.3 0.0087 3E-07 49.5 0.4 38 304-341 22-59 (100)
424 3h4m_A Proteasome-activating n 94.3 0.024 8.1E-07 54.3 3.6 23 68-90 53-75 (285)
425 3iby_A Ferrous iron transport 94.3 0.021 7.1E-07 54.9 3.1 23 68-90 3-25 (256)
426 1jwy_B Dynamin A GTPase domain 94.3 0.021 7.3E-07 55.6 3.1 24 67-90 25-48 (315)
427 2f7s_A C25KG, RAS-related prot 94.3 0.026 8.7E-07 51.5 3.5 26 65-90 24-49 (217)
428 1u94_A RECA protein, recombina 94.3 0.032 1.1E-06 56.5 4.5 38 60-100 60-99 (356)
429 3llu_A RAS-related GTP-binding 94.2 0.022 7.7E-07 51.3 3.0 29 62-90 16-44 (196)
430 2b6h_A ADP-ribosylation factor 94.2 0.021 7.2E-07 51.5 2.8 26 64-89 27-52 (192)
431 3dm5_A SRP54, signal recogniti 94.2 0.022 7.7E-07 59.4 3.4 26 65-90 99-124 (443)
432 2dby_A GTP-binding protein; GD 94.2 0.021 7.3E-07 58.1 3.1 22 68-89 3-24 (368)
433 1gwn_A RHO-related GTP-binding 94.2 0.027 9.1E-07 51.6 3.4 25 66-90 28-52 (205)
434 2qz4_A Paraplegin; AAA+, SPG7, 94.2 0.028 9.7E-07 52.8 3.7 23 68-90 41-63 (262)
435 2fu5_C RAS-related protein RAB 94.2 0.017 5.9E-07 50.9 2.1 24 66-89 8-31 (183)
436 2i1q_A DNA repair and recombin 94.1 0.027 9.2E-07 55.5 3.6 28 59-89 94-121 (322)
437 2gco_A H9, RHO-related GTP-bin 94.1 0.028 9.5E-07 50.9 3.4 25 66-90 25-49 (201)
438 2atx_A Small GTP binding prote 94.1 0.029 9.8E-07 50.1 3.5 25 66-90 18-42 (194)
439 2cjw_A GTP-binding protein GEM 94.1 0.03 1E-06 50.6 3.6 24 66-89 6-29 (192)
440 3tmk_A Thymidylate kinase; pho 94.1 0.032 1.1E-06 52.5 3.9 28 62-92 4-31 (216)
441 3kta_B Chromosome segregation 94.1 0.019 6.6E-07 52.2 2.2 63 158-221 70-139 (173)
442 4gzl_A RAS-related C3 botulinu 94.1 0.029 1E-06 51.0 3.4 25 65-89 29-53 (204)
443 3v9p_A DTMP kinase, thymidylat 94.1 0.023 7.8E-07 54.0 2.8 27 61-90 23-49 (227)
444 3fdi_A Uncharacterized protein 94.0 0.027 9.4E-07 52.1 3.2 24 67-90 7-30 (201)
445 4tmk_A Protein (thymidylate ki 94.0 0.032 1.1E-06 52.4 3.6 23 68-90 5-27 (213)
446 1l8q_A Chromosomal replication 94.0 0.026 8.8E-07 55.4 3.1 23 68-90 39-61 (324)
447 3n70_A Transport activator; si 94.0 0.031 1.1E-06 48.5 3.2 23 68-90 26-48 (145)
448 3ld9_A DTMP kinase, thymidylat 93.9 0.032 1.1E-06 52.9 3.5 25 66-90 21-45 (223)
449 3t15_A Ribulose bisphosphate c 93.9 0.027 9.3E-07 55.0 3.1 26 65-90 35-60 (293)
450 1x6v_B Bifunctional 3'-phospho 93.9 0.035 1.2E-06 60.5 4.2 39 65-103 51-91 (630)
451 2hup_A RAS-related protein RAB 93.9 0.033 1.1E-06 50.5 3.5 25 66-90 29-53 (201)
452 1c9k_A COBU, adenosylcobinamid 93.9 0.026 8.7E-07 51.9 2.6 21 69-89 2-22 (180)
453 3bh0_A DNAB-like replicative h 93.8 0.035 1.2E-06 54.9 3.7 36 52-90 57-92 (315)
454 2x77_A ADP-ribosylation factor 93.8 0.02 7E-07 50.9 1.8 24 65-88 21-44 (189)
455 2aka_B Dynamin-1; fusion prote 93.8 0.028 9.7E-07 54.1 2.9 25 66-90 26-50 (299)
456 2yc2_C IFT27, small RAB-relate 93.8 0.016 5.4E-07 52.1 1.0 24 66-89 20-43 (208)
457 3gmt_A Adenylate kinase; ssgci 93.7 0.033 1.1E-06 53.2 3.1 23 68-90 10-32 (230)
458 2qrr_A Methionine import ATP-b 93.7 0.012 4.1E-07 48.8 0.0 36 306-341 24-59 (101)
459 1xwi_A SKD1 protein; VPS4B, AA 93.7 0.055 1.9E-06 53.6 4.9 33 68-100 47-79 (322)
460 4djt_A GTP-binding nuclear pro 93.6 0.017 6E-07 52.7 1.0 25 65-89 10-34 (218)
461 2chg_A Replication factor C sm 93.6 0.037 1.3E-06 49.6 3.1 23 68-90 40-62 (226)
462 2j0v_A RAC-like GTP-binding pr 93.5 0.041 1.4E-06 49.9 3.4 25 66-90 9-33 (212)
463 1ypw_A Transitional endoplasmi 93.5 0.011 3.8E-07 66.2 -0.6 40 57-100 505-544 (806)
464 3cpj_B GTP-binding protein YPT 93.5 0.045 1.5E-06 50.4 3.6 25 66-90 13-37 (223)
465 2ce7_A Cell division protein F 93.5 0.034 1.2E-06 58.5 3.2 22 69-90 52-73 (476)
466 4i1u_A Dephospho-COA kinase; s 93.5 0.04 1.4E-06 51.8 3.2 71 160-240 113-184 (210)
467 1yrb_A ATP(GTP)binding protein 93.4 0.049 1.7E-06 51.3 3.9 29 62-90 10-38 (262)
468 2z4s_A Chromosomal replication 93.4 0.036 1.2E-06 57.5 3.1 23 68-90 132-154 (440)
469 3ced_A Methionine import ATP-b 93.3 0.0089 3.1E-07 49.5 -1.3 38 304-341 19-56 (98)
470 2r62_A Cell division protease 93.3 0.021 7.3E-07 54.2 1.1 22 69-90 47-68 (268)
471 3q3j_B RHO-related GTP-binding 93.3 0.051 1.7E-06 49.9 3.6 24 66-89 27-50 (214)
472 1sxj_D Activator 1 41 kDa subu 93.2 0.042 1.4E-06 53.9 3.1 42 48-90 41-82 (353)
473 3syl_A Protein CBBX; photosynt 93.2 0.047 1.6E-06 52.8 3.4 23 68-90 69-91 (309)
474 2v3c_C SRP54, signal recogniti 93.2 0.026 9E-07 58.7 1.7 25 66-90 99-123 (432)
475 1d2n_A N-ethylmaleimide-sensit 93.2 0.051 1.7E-06 51.9 3.6 25 66-90 64-88 (272)
476 1knx_A Probable HPR(Ser) kinas 93.0 0.068 2.3E-06 53.3 4.3 37 48-88 133-169 (312)
477 2g3y_A GTP-binding protein GEM 93.0 0.056 1.9E-06 50.2 3.5 24 66-89 37-60 (211)
478 2axn_A 6-phosphofructo-2-kinas 93.0 0.052 1.8E-06 57.7 3.6 35 66-100 35-73 (520)
479 1bif_A 6-phosphofructo-2-kinas 92.9 0.055 1.9E-06 56.5 3.7 25 66-90 39-63 (469)
480 3hws_A ATP-dependent CLP prote 92.9 0.049 1.7E-06 54.5 3.2 23 68-90 53-75 (363)
481 4dcu_A GTP-binding protein ENG 92.9 0.039 1.3E-06 57.4 2.5 22 68-89 25-46 (456)
482 3cnl_A YLQF, putative uncharac 92.9 0.051 1.7E-06 52.5 3.1 23 68-90 101-123 (262)
483 1puj_A YLQF, conserved hypothe 92.8 0.059 2E-06 52.6 3.4 25 66-90 120-144 (282)
484 2v1u_A Cell division control p 92.8 0.048 1.6E-06 53.8 2.8 23 68-90 46-68 (387)
485 3gj0_A GTP-binding nuclear pro 92.7 0.046 1.6E-06 50.1 2.4 24 66-89 15-39 (221)
486 3hdt_A Putative kinase; struct 92.7 0.067 2.3E-06 50.5 3.5 24 67-90 15-38 (223)
487 4hlc_A DTMP kinase, thymidylat 92.7 0.053 1.8E-06 50.4 2.7 23 68-90 4-26 (205)
488 2orw_A Thymidine kinase; TMTK, 92.5 0.074 2.5E-06 48.4 3.5 22 68-89 5-27 (184)
489 1ofh_A ATP-dependent HSL prote 92.5 0.063 2.2E-06 51.5 3.2 23 68-90 52-74 (310)
490 1g8f_A Sulfate adenylyltransfe 92.5 0.046 1.6E-06 58.1 2.4 25 67-91 396-420 (511)
491 3th5_A RAS-related C3 botulinu 91.7 0.023 7.8E-07 51.4 0.0 24 66-89 30-53 (204)
492 2j37_W Signal recognition part 92.5 0.066 2.3E-06 56.8 3.5 27 64-90 99-125 (504)
493 4a1f_A DNAB helicase, replicat 92.4 0.073 2.5E-06 53.6 3.6 34 54-90 37-70 (338)
494 2gks_A Bifunctional SAT/APS ki 92.4 0.068 2.3E-06 57.2 3.5 25 66-90 372-396 (546)
495 2qby_B CDC6 homolog 3, cell di 92.4 0.073 2.5E-06 52.8 3.5 25 66-90 45-69 (384)
496 2q6t_A DNAB replication FORK h 92.3 0.071 2.4E-06 55.2 3.5 35 53-90 190-224 (444)
497 3uk6_A RUVB-like 2; hexameric 92.2 0.081 2.8E-06 52.4 3.7 32 68-99 72-104 (368)
498 2vhj_A Ntpase P4, P4; non- hyd 92.2 0.079 2.7E-06 53.2 3.5 29 58-89 118-146 (331)
499 1tue_A Replication protein E1; 92.2 0.066 2.3E-06 50.4 2.8 23 68-90 60-82 (212)
500 1sky_E F1-ATPase, F1-ATP synth 92.2 0.083 2.8E-06 55.6 3.8 30 58-90 146-175 (473)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.3e-35 Score=298.81 Aligned_cols=258 Identities=18% Similarity=0.234 Sum_probs=193.1
Q ss_pred eeeeEeeeC----cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 012357 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (465)
Q Consensus 40 ~~~ls~~~g----~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------- 104 (465)
.+++++.|+ ...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++.
T Consensus 27 v~~ls~~y~~~~~~~~aL~~vsl~i~~Ge---i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 27 LSNITKVFHQGTRTIQALNNVSLHVPAGQ---IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred EEeEEEEeCCCCCCeEEEEeeEEEEcCCC---EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 356666663 3679999999999999 99999999999999999999999 99999999999864
Q ss_pred ccccccccCCCCCCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhh
Q 012357 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSE 172 (465)
Q Consensus 105 ~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d 172 (465)
++.+||+||++++++..|+.+|+.+........... .-....+.++. ....+ ..|||.||+|+
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL----- 178 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL----- 178 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT-----
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH-----
Confidence 356999999999999999999998864311110000 00001111111 11112 23999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEEeeCCCC
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~~ 242 (465)
..+|.++++||||++||+..... ++++++++ |.|+ ++.+.++||+|++|++|++++.|+..++
T Consensus 179 ~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev------- 251 (366)
T 3tui_C 179 ASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV------- 251 (366)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH-------
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH-------
Confidence 99999999999999999987554 55777655 9998 8899999999999999999999998887
Q ss_pred CCCccCCccccccCCCcccHHHHHHHhcccccccccceeeeccCCCCCCchhhhhhhhh---cCCCceEEEEEeeecCCC
Q 012357 243 PFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRM---RNRDGKYNLMFEEWVTDS 319 (465)
Q Consensus 243 p~~~~~~p~~ilk~~~~~~~~~i~~~l~~~~~~~~~~~~~i~~~p~~~~~~~~~~~i~~---~~~~~~~~l~~~~~~~~~ 319 (465)
+.+| ..+.+..++....... .| ......++. ......+++.|.|..+..
T Consensus 252 ----~~~p------~~~~~~~~~~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 303 (366)
T 3tui_C 252 ----FSHP------KTPLAQKFIQSTLHLD-------------IP-----EDYQERLQAEPFTDCVPMLRLEFTGQSVDA 303 (366)
T ss_dssp ----HSSC------CSHHHHHHHHHHTTCC-------------CC-----HHHHHHCBSSCCTTCCEEEEEEEEHHHHSS
T ss_pred ----HhCC------CcHHHHHHHhhccccc-------------Cc-----hhhhhhhccccccCCCceEEEEecCcccch
Confidence 4445 5556666665544211 00 000000000 113467999999999999
Q ss_pred CeEeeeeeeeeeeeeEecccc
Q 012357 320 PFIISPRITFEVSVRLLGGLM 340 (465)
Q Consensus 320 p~i~~~~~~f~v~~~il~gl~ 340 (465)
|++++..++|+|++|||+|.+
T Consensus 304 ~~~~~~~~~~~~~~~il~g~~ 324 (366)
T 3tui_C 304 PLLSETARRFNVNNNIISAQM 324 (366)
T ss_dssp CHHHHHHHHHTCEEEEEEEEE
T ss_pred hHHHHHHHHcCCCeEEEEeeE
Confidence 999999999999999999974
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.96 E-value=8.4e-30 Score=260.93 Aligned_cols=188 Identities=15% Similarity=0.078 Sum_probs=149.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec----C-----ccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----S-----SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~----~-----~~~ig 109 (465)
.+++++.|+...+|++|||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++ . ++.+|
T Consensus 7 i~~ls~~y~~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 7 IGHLSKSFQNTPVLNDISLSLDPGE---ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 4678999999999999999999999 99999999999999999999999 9999999999875 1 35699
Q ss_pred cccCCCCCCccchHHHHHHhhhcccccccccc---ccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcc
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY---DFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPL 177 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~---d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~ 177 (465)
|+||++.+|+.+|+.+|+.+............ -....+.++. ....+ ..|||.||+|+ ..+|.
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL-----~~~P~ 158 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARAL-----APDPE 158 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHH-----TTCCS
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH-----HcCCC
Confidence 99999999999999999998643211110000 0001111111 11122 24999999999 99999
Q ss_pred eeeeeeeecCccHHHHHHHH---HHH-HHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 178 IDLRVSVTGGVHFDLVKRVF---RDI-QRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 178 LdllDEpts~LD~~l~rrIl---rdl-~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
++++||||++||+....+++ +++ ++.|.|+ ++.+..+||+|++|++|+|+..|...++
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el 226 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHH
Confidence 99999999999998765554 343 3458888 7888999999999999999999988876
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.96 E-value=7.7e-30 Score=262.97 Aligned_cols=188 Identities=11% Similarity=0.085 Sum_probs=150.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+...+|++|||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.+||+||
T Consensus 6 ~~~l~~~yg~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 6 LQNVTKAWGEVVVSKDINLDIHEGE---FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEeEEEEECCEEEEeeeEEEECCCC---EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 4688999999999999999999999 99999999999999999999999 99999999999764 356999999
Q ss_pred CCCCCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+++.+|+.+|+.+........... .-....+.++. ....+ ..|||.||+|+ ..+|.++++
T Consensus 83 ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL-----~~~P~lLLL 157 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTL-----VAEPSVFLL 157 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHH-----HHCCSEEEE
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHH-----HcCCCEEEE
Confidence 999999999999998864321111000 00001111111 11122 24999999999 899999999
Q ss_pred eeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
||||++||+.... ++++++.++ |.|+ ++.+..+||+|++|++|+++..|...++
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l 221 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHH
Confidence 9999999998654 455666554 9988 7888999999999999999999988887
No 4
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.96 E-value=9.8e-30 Score=250.00 Aligned_cols=188 Identities=19% Similarity=0.239 Sum_probs=147.2
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------------
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------- 104 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------------- 104 (465)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++.
T Consensus 9 i~~l~~~y~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 9 VIDLHKRYGGHEVLKGVSLQARAGD---VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred EeeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 4678888988899999999999999 99999999999999999999999 99999999998763
Q ss_pred ------ccccccccCCCCCCccchHHHHHHhhh-ccccccc---cccccccccccCc-------ccccc---ccchhhhh
Q 012357 105 ------SRIIDGNFDDPRLTDYDTLLENIRGLK-EGKAVQV---PIYDFKSSSRIGY-------RTLEV---PSSRIVII 164 (465)
Q Consensus 105 ------~~~ig~vfQ~p~l~~~~tv~enL~~l~-~~~~~~~---p~~d~~~~~~~~~-------~~~~l---~~qRVlIa 164 (465)
++.++|+||++.+++..|+.+|+.+.. ....... ...-....+.++. ....+ ..|||.||
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA 165 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence 235899999999999999999998742 1111000 0000001111111 11112 23999999
Q ss_pred HhHHhhhhccCcceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 165 egl~aL~d~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+++ ..+|.++++||||++||+.... +++++++++|.|+ ++.+..+||++++|++|+++..++..++
T Consensus 166 raL-----~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 240 (262)
T 1b0u_A 166 RAL-----AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240 (262)
T ss_dssp HHH-----HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHH-----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999 8999999999999999998655 4556666668888 7888899999999999999988877665
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.96 E-value=2e-29 Score=248.14 Aligned_cols=188 Identities=18% Similarity=0.209 Sum_probs=147.0
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------ccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------~~~ig 109 (465)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++
T Consensus 27 i~~l~~~y~~~~vL~~vsl~i~~Ge---i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 27 VHQLKKSFGSLEVLKGINVHIREGE---VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCC---EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 5678889988899999999999999 99999999999999999999999 99999999998763 23589
Q ss_pred cccCCCCCCccchHHHHHHhhh-cccccccc---ccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCc
Q 012357 110 GNFDDPRLTDYDTLLENIRGLK-EGKAVQVP---IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRP 176 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~-~~~~~~~p---~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p 176 (465)
|+||++.+++..|+.+|+.+.. ........ ..-....+.++. ....+ ..|||.||+++ ..+|
T Consensus 104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL-----~~~p 178 (263)
T 2olj_A 104 MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARAL-----AMEP 178 (263)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH-----TTCC
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH-----HCCC
Confidence 9999999999999999998742 11110000 000001111111 11122 23999999999 9999
Q ss_pred ceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 177 LIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 177 ~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
.++++||||++||+.... ++++++.++|.|+ ++.+.++||++++|++|+++..++..++
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999998655 4556666668888 7888999999999999999988776665
No 6
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=2.7e-29 Score=243.61 Aligned_cols=188 Identities=16% Similarity=0.119 Sum_probs=145.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++|
T Consensus 9 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 85 (240)
T 1ji0_A 9 VQSLHVYYGAIHAIKGIDLKVPRGQ---IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIAL 85 (240)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEE
T ss_pred EEeEEEEECCeeEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEE
Confidence 4678889988899999999999999 99999999999999999999999 99999999998763 234999
Q ss_pred ccCCCCCCccchHHHHHHhhhcccccccc---cc-c----c-ccccccCcccccc---ccchhhhhHhHHhhhhccCcce
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVP---IY-D----F-KSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLI 178 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~~p---~~-d----~-~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~L 178 (465)
+||++.+++..|+.+|+.+.......... .. . + ............+ ..|||.||+++ ..+|.+
T Consensus 86 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL-----~~~p~l 160 (240)
T 1ji0_A 86 VPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL-----MSRPKL 160 (240)
T ss_dssp ECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH-----TTCCSE
T ss_pred EecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH-----HcCCCE
Confidence 99999999999999999875311100000 00 0 0 0111111111122 23999999999 999999
Q ss_pred eeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 179 DLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 179 dllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+++||||++||+..... ++++++++|.|+ ++.+..+||++++|++|+++..++..++
T Consensus 161 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 226 (240)
T 1ji0_A 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999987554 456666678888 6778899999999999999877665544
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.96 E-value=2.9e-29 Score=242.84 Aligned_cols=187 Identities=16% Similarity=0.179 Sum_probs=141.4
Q ss_pred eeeeEeeeCc----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 012357 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (465)
Q Consensus 40 ~~~ls~~~g~----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------- 104 (465)
.+++++.|+. ..+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++.
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGE---FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEEeCCCCcceeeEEeeeEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 3577777752 579999999999999 99999999999999999999999 99999999998753
Q ss_pred -ccccccccCCCCCCccchHHHHHHhhhccc---cccccc-c--ccccccccCc-------ccccc---ccchhhhhHhH
Q 012357 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGK---AVQVPI-Y--DFKSSSRIGY-------RTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 -~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~---~~~~p~-~--d~~~~~~~~~-------~~~~l---~~qRVlIaegl 167 (465)
++.++|+||++.+++..|+.+|+.+..... ...... . -....+..+. ....+ ..|||.||+|+
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 135999999999999999999998743211 000000 0 0000111111 11112 23999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||++||+....+ ++++++++ |.|+ ++++ .+||++++|++|+++..++..++
T Consensus 161 -----~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 161 -----ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp -----TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC--
T ss_pred -----HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhh
Confidence 99999999999999999987554 45666554 9888 6654 79999999999999988776654
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.96 E-value=5.8e-29 Score=245.14 Aligned_cols=193 Identities=12% Similarity=0.070 Sum_probs=147.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~v 111 (465)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+
T Consensus 14 ~~~l~~~~~~~~vL~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v 90 (266)
T 4g1u_C 14 ASHLHYHVQQQALINDVSLHIASGE---MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVM 90 (266)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEeEEEEeCCeeEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEE
Confidence 4678888999999999999999999 99999999999999999999999 99999999999864 2458999
Q ss_pred cCCCCCCccchHHHHHHhhhccccccc-cccccccccccC------cccccc---ccchhhhhHhHHhhh-hccCcceee
Q 012357 112 FDDPRLTDYDTLLENIRGLKEGKAVQV-PIYDFKSSSRIG------YRTLEV---PSSRIVIIEGIYALS-EKLRPLIDL 180 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l~~~~~~~~-p~~d~~~~~~~~------~~~~~l---~~qRVlIaegl~aL~-d~~~p~Ldl 180 (465)
||++.+++..|+.+|+.+......... ...-....+..+ .....+ ..|||.||+++..++ ...+|.+++
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl 170 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF 170 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE
T ss_pred ecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 999998888999999988643211000 000000001111 011112 249999999993222 122999999
Q ss_pred eeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 181 RVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 181 lDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+||||++||+..... ++++++++ |.|+ ++.+.++||++++|++|+++..|+..++
T Consensus 171 lDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 171 LDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp ECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred EeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999986554 55666655 5677 7888999999999999999998887765
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.96 E-value=5.4e-29 Score=239.14 Aligned_cols=183 Identities=17% Similarity=0.189 Sum_probs=141.7
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc-----------cc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-----------RI 107 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~-----------~~ 107 (465)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++.. +.
T Consensus 7 ~~~l~~~y~~~~~l~~vsl~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (224)
T 2pcj_A 7 AENIKKVIRGYEILKGISLSVKKGE---FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRK 83 (224)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHH
T ss_pred EEeEEEEECCEeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCc
Confidence 4678899988899999999999999 99999999999999999999999 999999999987631 45
Q ss_pred cccccCCCCCCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccC
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
++|+||++.+++..|+.+|+.+........... .-....+..+. ....+ ..|||.||+++ ..+
T Consensus 84 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral-----~~~ 158 (224)
T 2pcj_A 84 LGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL-----ANE 158 (224)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT-----TTC
T ss_pred EEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH-----HcC
Confidence 899999999999999999998753211100000 00001111111 11122 23999999999 999
Q ss_pred cceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCC
Q 012357 176 PLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~ 231 (465)
|.++++||||++||+..... ++++++++|.|+ .+.+ .+||++++|++|+++..|+
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999987554 456666668888 5556 7999999999999987664
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.96 E-value=8e-29 Score=253.91 Aligned_cols=188 Identities=14% Similarity=0.133 Sum_probs=149.1
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+.+.+|++|||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+||
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 6 VVNLKKYFGKVKAVDGVSFEVKDGE---FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCC---EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 4678899998899999999999999 99999999999999999999999 99999999998763 357999999
Q ss_pred CCCCCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+++.+|+.+|+.+........... .-....+.++. ....+ ..|||.||+|+ ..+|.++++
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL-----~~~P~lLLL 157 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARAL-----VKQPKVLLF 157 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH-----TTCCSEEEE
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH-----HcCCCEEEE
Confidence 999999999999999864321110000 00001111111 11122 24999999999 999999999
Q ss_pred eeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|||+++||+....+ +++++.++ |.|+ .+.+..+||++++|++|+++..|+..++
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999987554 44666544 8887 6778899999999999999998888776
No 11
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.96 E-value=2.4e-29 Score=249.07 Aligned_cols=188 Identities=14% Similarity=0.162 Sum_probs=145.0
Q ss_pred eeeeEeeeCc-EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------cccc
Q 012357 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g~-~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------~~~i 108 (465)
.+++++.|+. ..+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.+
T Consensus 10 i~~ls~~y~~~~~~L~~isl~i~~Ge---~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 10 VEELNYNYSDGTHALKGINMNIKRGE---VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEETTS---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEECCCCeEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 4678888864 569999999999999 99999999999999999999999 99999999999862 3469
Q ss_pred ccccCCCC-CCccchHHHHHHhhhcccccccc-----cc----ccccccccCcccccc---ccchhhhhHhHHhhhhccC
Q 012357 109 DGNFDDPR-LTDYDTLLENIRGLKEGKAVQVP-----IY----DFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 109 g~vfQ~p~-l~~~~tv~enL~~l~~~~~~~~p-----~~----d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
||+||+|. .+...|+.+|+.+.......... .. .+............+ ..|||.||+++ ..+
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL-----~~~ 161 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL-----VME 161 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH-----TTC
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHH-----HcC
Confidence 99999983 34468999999886432111100 00 000111111111122 24999999999 999
Q ss_pred cceeeeeeeecCccHHHHH---HHHHHHH-HcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 176 PLIDLRVSVTGGVHFDLVK---RVFRDIQ-RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~r---rIlrdl~-e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|.++++||||++||+.... +++++++ ++|.|+ ++.+.++||++++|++|+++..|+..++
T Consensus 162 P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 162 PKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999998655 4557776 559988 6778889999999999999999988776
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=6e-29 Score=243.79 Aligned_cols=188 Identities=14% Similarity=0.160 Sum_probs=147.0
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------cccccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~------~~~ig~vf 112 (465)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|+|
T Consensus 18 i~~l~~~y~~~~vl~~vsl~i~~Ge---i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~ 94 (256)
T 1vpl_A 18 VKDLRKRIGKKEILKGISFEIEEGE---IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 94 (256)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred EEEEEEEECCEEEEEeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEc
Confidence 4788999998899999999999999 99999999999999999999999 99999999998763 34699999
Q ss_pred CCCCCCccchHHHHHHhhhcccccccc---ccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p---~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
|++.+++..|+.+|+.+.......... ..-....+..+. ....+ ..||+.||+++ ..+|.+++
T Consensus 95 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL-----~~~p~lll 169 (256)
T 1vpl_A 95 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL-----MVNPRLAI 169 (256)
T ss_dssp TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH-----TTCCSEEE
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH-----HcCCCEEE
Confidence 999999999999999875321100000 000000111111 11122 24999999999 99999999
Q ss_pred eeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 181 RVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 181 lDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+||||++||+....+ ++++++++|.|+ ++.+..+||++++|.+|+++..++..++
T Consensus 170 LDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 233 (256)
T 1vpl_A 170 LDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233 (256)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred EeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHH
Confidence 999999999987554 556666678888 7888899999999999999877765554
No 13
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.96 E-value=1.2e-28 Score=253.57 Aligned_cols=188 Identities=15% Similarity=0.125 Sum_probs=142.6
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+.+.+|++|||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+||
T Consensus 14 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 14 LENLTKRFGNFTAVNKLNLTIKDGE---FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred EEEEEEEECCEEEEeeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 4678899988899999999999999 99999999999999999999999 99999999998753 357999999
Q ss_pred CCCCCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+|+.+|+.+|+.+........... .-....+.++. ....+ ..|||.||+++ ..+|.++++
T Consensus 91 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL-----~~~P~lLLL 165 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI-----VVEPDVLLM 165 (372)
T ss_dssp ------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHH-----TTCCSEEEE
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 999999999999999854211110000 00000111111 11112 34999999999 999999999
Q ss_pred eeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|||+++||+....+ +++++.++ |.|+ .+.+..+||++++|++|+++..|...++
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999987554 44666544 8887 6778899999999999999998888776
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.96 E-value=1e-28 Score=253.35 Aligned_cols=188 Identities=14% Similarity=0.143 Sum_probs=148.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+...+|++|||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+||
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 6 LENIVKKFGNFTALNNINLKIKDGE---FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp EEEEEEESSSSEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEeEEEEECCEEEEEeeEEEECCCC---EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 4678889988889999999999999 99999999999999999999999 99999999998763 357999999
Q ss_pred CCCCCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+|+.+|+.+|+.+........... .-....+.++. ....+ ..|||.||+|+ ..+|.++++
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL-----~~~P~lLLL 157 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARAL-----VKEPEVLLL 157 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHH-----TTCCSEEEE
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHH-----HcCCCEEEE
Confidence 999999999999999854211110000 00001111111 11122 24999999999 999999999
Q ss_pred eeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|||+++||+....+ +++++.++ |.|+ .+.+..+||++++|++|+++..|+..++
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999987554 44666544 8887 6778899999999999999998887776
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.96 E-value=1.9e-28 Score=252.34 Aligned_cols=188 Identities=18% Similarity=0.156 Sum_probs=148.1
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------ccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRI 107 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----------~~~ 107 (465)
.+++++.|+...+|++|||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 6 LVDVWKVFGEVTAVREMSLEVKDGE---FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 4678889988899999999999999 99999999999999999999999 99999999997642 356
Q ss_pred cccccCCCCCCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccC
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLR 175 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~ 175 (465)
+||+||++.+|+.+|+.+|+.+........... .-....+.++. ....+ ..|||.||+++ ..+
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL-----~~~ 157 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAI-----VRK 157 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHH-----HTC
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHH-----hcC
Confidence 999999999999999999999854211110000 00001111111 11122 24999999999 999
Q ss_pred cceeeeeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 176 PLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 176 p~LdllDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
|.++++|||+++||+....+ +++++.++ |.|+ .+.+..+||++++|++|+++..|+..++
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999987554 44666544 8887 6788899999999999999998888776
No 16
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.95 E-value=1.1e-28 Score=251.82 Aligned_cols=187 Identities=15% Similarity=0.166 Sum_probs=147.6
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+.. +++++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+||
T Consensus 4 ~~~l~~~y~~~-~l~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 4 IESLSRKWKNF-SLDNLSLKVESGE---YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp EEEEEEECSSC-EEEEEEEEECTTC---EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred EEEEEEEECCE-EEeeeEEEEcCCC---EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 46788999877 9999999999999 99999999999999999999999 99999999998764 356999999
Q ss_pred CCCCCccchHHHHHHhhhccccccccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEp 184 (465)
++.+|+.+|+.+|+.+............-....+.++. ....+ ..|||.||+++ ..+|.++++|||
T Consensus 80 ~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL-----~~~P~lLLLDEP 154 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARAL-----VTNPKILLLDEP 154 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHT-----TSCCSEEEEESS
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH-----HcCCCEEEEECc
Confidence 99999999999999985421110000000001111111 11122 23999999999 999999999999
Q ss_pred ecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 185 TGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 185 ts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+++||+....+ +++++.++ |.|+ .+.+..+||++++|++|+++..|+..++
T Consensus 155 ~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215 (348)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999987554 45666544 8887 6778899999999999999998887776
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.95 E-value=6.1e-29 Score=243.51 Aligned_cols=187 Identities=16% Similarity=0.194 Sum_probs=145.2
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------cccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~--------~~~ig~ 110 (465)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++|
T Consensus 10 i~~l~~~y~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 86 (257)
T 1g6h_A 10 TENIVKYFGEFKALDGVSISVNKGD---VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86 (257)
T ss_dssp EEEEEEEETTEEEEEEECCEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred EeeeEEEECCEeeEeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 4678889988899999999999999 99999999999999999999999 99999999998763 235899
Q ss_pred ccCCCCCCccchHHHHHHhhhcc--cc-----------ccccc-cc--cccccccCc------ccccc---ccchhhhhH
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEG--KA-----------VQVPI-YD--FKSSSRIGY------RTLEV---PSSRIVIIE 165 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~--~~-----------~~~p~-~d--~~~~~~~~~------~~~~l---~~qRVlIae 165 (465)
+||++.+++..|+.+|+.+.... .. ..... .. ....+..+. ....+ ..|||.||+
T Consensus 87 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAr 166 (257)
T 1g6h_A 87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGR 166 (257)
T ss_dssp CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred EccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHH
Confidence 99999999999999999875321 01 00000 00 001111111 11122 239999999
Q ss_pred hHHhhhhccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcce
Q 012357 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (465)
Q Consensus 166 gl~aL~d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aD 234 (465)
++ ..+|.++++||||++||+..... ++++++++|.|+ ++.+..+||++++|++|+++..++..+
T Consensus 167 aL-----~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 167 AL-----MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HH-----HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HH-----HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99 89999999999999999987554 456666668888 566788999999999999987766554
No 18
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=8.6e-29 Score=253.23 Aligned_cols=188 Identities=15% Similarity=0.154 Sum_probs=148.4
Q ss_pred eeeeEeee-CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----cccccccc
Q 012357 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNF 112 (465)
Q Consensus 40 ~~~ls~~~-g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vf 112 (465)
.+++++.| +.+.+|++|||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+|
T Consensus 17 ~~~l~~~y~g~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 93 (355)
T 1z47_A 17 FVGVEKIYPGGARSVRGVSFQIREGE---MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVF 93 (355)
T ss_dssp EEEEEECCTTSTTCEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEEC
T ss_pred EEEEEEEEcCCCEEEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEe
Confidence 46788888 87789999999999999 99999999999999999999999 99999999998753 45799999
Q ss_pred CCCCCCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceee
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
|++.+++.+|+.+|+.+........... .-....+.++. ....+ ..|||.||+|+ ..+|.+++
T Consensus 94 Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL-----~~~P~lLL 168 (355)
T 1z47_A 94 QNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARAL-----APRPQVLL 168 (355)
T ss_dssp GGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH-----TTCCSEEE
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH-----HcCCCEEE
Confidence 9999999999999998854211110000 00001111111 11122 23999999999 99999999
Q ss_pred eeeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 181 RVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 181 lDEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+|||+++||+....+ +++++.++ |.|+ .+.+..+||++++|.+|+++..|+..++
T Consensus 169 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 169 FDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp EESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999987554 45666544 8888 7788899999999999999998887776
No 19
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=1.3e-28 Score=251.90 Aligned_cols=188 Identities=17% Similarity=0.126 Sum_probs=147.1
Q ss_pred eeeeEeeeCcEE--EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------cc
Q 012357 40 EDTLSFEKGFFI--VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SR 106 (465)
Q Consensus 40 ~~~ls~~~g~~~--aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----------~~ 106 (465)
.+++++.|+.+. +|++|||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++
T Consensus 6 i~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 6 VKNVSKVFKKGKVVALDNVNINIENGE---RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECTTC---EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEeEEEEECCEeeeeEeceEEEECCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 467888888776 9999999999999 99999999999999999999999 99999999997642 35
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccccccccc---cccccccccCc------ccccc---ccchhhhhHhHHhhhhcc
Q 012357 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKL 174 (465)
Q Consensus 107 ~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~ 174 (465)
.++|+||++.+++.+|+.+|+.+........... .-....+.++. ....+ ..|||.||+++ ..
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL-----~~ 157 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARAL-----VK 157 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH-----TT
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH-----Hh
Confidence 6999999999999999999999864321111000 00001111111 11122 23999999999 99
Q ss_pred CcceeeeeeeecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 175 RPLIDLRVSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 175 ~p~LdllDEpts~LD~~l~r---rIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+|.++++|||+++||+.... ++++++.++ |.|+ .+.+..+||++++|++|+++..|+..++
T Consensus 158 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999998654 445666544 8888 6788899999999999999988887776
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.95 E-value=7.1e-28 Score=233.99 Aligned_cols=185 Identities=15% Similarity=0.114 Sum_probs=143.2
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----ccccccccC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----~~~ig~vfQ 113 (465)
.+++++.|+. +|++|||++++ + ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++|+||
T Consensus 4 ~~~l~~~y~~--~l~~isl~i~~-e---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 4 KVRAEKRLGN--FRLNVDFEMGR-D---YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp EEEEEEEETT--EEEEEEEEECS-S---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred EEEEEEEeCC--EEeeeEEEECC-E---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 4678888876 49999999999 9 99999999999999999999999 99999999998753 356999999
Q ss_pred CCCCCccchHHHHHHhhhccccccc-cccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQV-PIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVS 183 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~-p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDE 183 (465)
++.+++..|+.+|+.+......... ...-....+..+. ....+ ..|||.||+++ ..+|.++++||
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral-----~~~p~lllLDE 152 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARAL-----VIQPRLLLLDE 152 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHH-----TTCCSSBEEES
T ss_pred CCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH-----HcCCCEEEEeC
Confidence 9999999999999987532110000 0000001111111 11122 23999999999 99999999999
Q ss_pred eecCccHHHHHH---HHHHHHH-cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 184 VTGGVHFDLVKR---VFRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 184 pts~LD~~l~rr---Ilrdl~e-~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
||++||+..... +++++++ +|.|+ ++.+..+||++++|++|+++..++..++
T Consensus 153 Pts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999987554 4566654 48888 6778899999999999999988877665
No 21
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.95 E-value=3.4e-28 Score=244.34 Aligned_cols=220 Identities=17% Similarity=0.164 Sum_probs=159.7
Q ss_pred CCCCCCCccccccccceeeeeccCccee---eceeeeeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHH
Q 012357 7 SGADSPRRRPGLLRDQVQLVKKKDSDRY---EIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVF 82 (465)
Q Consensus 7 ~~~~~~~~~~~l~~~~~~l~~~~~~k~y---~~~~v~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL 82 (465)
.+..+.+|...++............... ...--.++++|.|+ ...+|++|||++++|+ ++||+||||||||||
T Consensus 20 ~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge---~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 20 HMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQ---TLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTC---EEEEESSSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCC---EEEEECCCCchHHHH
Confidence 3456667777777654443322211111 11234688999994 6789999999999999 999999999999999
Q ss_pred HHHHHhcC-CCeeEEEECCeecC-------ccccccccCCCCCCccchHHHHHHhhhcccccc-cc-------cccc---
Q 012357 83 TEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ-VP-------IYDF--- 143 (465)
Q Consensus 83 ~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~-~p-------~~d~--- 143 (465)
+++|+|++ |++|.|.+||.++. ++.++|+||++.+|+ .|+.+||.+........ .. ..++
T Consensus 97 l~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~ 175 (306)
T 3nh6_A 97 LRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMA 175 (306)
T ss_dssp HHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHh
Confidence 99999999 99999999999864 356999999999885 59999998754211100 00 0000
Q ss_pred ---ccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HH
Q 012357 144 ---KSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EE 209 (465)
Q Consensus 144 ---~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~ 209 (465)
.....++.....+ ..||+.||+|+ ..+|.++++||||++||+.....+++.+.+ ++.|+ ++
T Consensus 176 lp~gl~t~~~~~g~~LSGGqrQRvaiARAL-----~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 176 FPEGYRTQVGERGLKLSGGEKQRVAIARTI-----LKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp STTGGGCEESTTSBCCCHHHHHHHHHHHHH-----HHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred ccchhhhHhcCCcCCCCHHHHHHHHHHHHH-----HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 0011111111122 24999999999 889999999999999999987766654433 36776 66
Q ss_pred HHHHHhceEEEccCcEEEecCCcceEE
Q 012357 210 IIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 210 vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.+.. ||+|++|.+|+|++.|.+.++.
T Consensus 251 ~~~~-aD~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 251 TVVN-ADQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp HHHT-CSEEEEEETTEEEEEECHHHHH
T ss_pred HHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 6765 9999999999999999988874
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.94 E-value=1.4e-27 Score=235.14 Aligned_cols=187 Identities=15% Similarity=0.096 Sum_probs=144.0
Q ss_pred eeeeEeeeC--c---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----ccccc
Q 012357 40 EDTLSFEKG--F---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g--~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----~~~ig 109 (465)
.+++++.|+ . +.+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 5 ~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 5 VVNVSHIFHRGTPLEKKALENVSLVINEGE---CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp EEEEEEEESTTSTTCEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEecCCCccccceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 467888886 4 789999999999999 99999999999999999999999 99999999998763 45699
Q ss_pred cccCCC-CCCccchHHHHHHhhhccccccccc---cccccccccCcc--------cccc---ccchhhhhHhHHhhhhcc
Q 012357 110 GNFDDP-RLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGYR--------TLEV---PSSRIVIIEGIYALSEKL 174 (465)
Q Consensus 110 ~vfQ~p-~l~~~~tv~enL~~l~~~~~~~~p~---~d~~~~~~~~~~--------~~~l---~~qRVlIaegl~aL~d~~ 174 (465)
|+||++ ..+...|+.+|+.+..... ..... .-....+.++.. ...+ ..|||.||+++ ..
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL-----~~ 155 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVI-----VH 155 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHH-----TT
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHH-----Hc
Confidence 999996 4566789999998753211 10000 000011111111 1122 23999999999 99
Q ss_pred CcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 175 RPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 175 ~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+|.++++||||++||+..... +++++.++|.|+ ++.+..+||++++|++|+++..++..++
T Consensus 156 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 156 EPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999987554 456665568888 5667889999999999999988877665
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.94 E-value=6.1e-28 Score=239.44 Aligned_cols=188 Identities=10% Similarity=0.020 Sum_probs=140.9
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------ccccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~---------~~~ig 109 (465)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.++
T Consensus 24 ~~~l~~~y~~~~vL~~isl~i~~Ge---~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~ 100 (279)
T 2ihy_A 24 LDQIGRMKQGKTILKKISWQIAKGD---KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIG 100 (279)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEE
T ss_pred EEeEEEEECCEEEEEeeeEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEE
Confidence 4678889988899999999999999 99999999999999999999999 99999999998754 35699
Q ss_pred cccCCCCCC--ccchHHHHHHhhhccc----c-cccc--ccccccccccCc------ccccc---ccchhhhhHhHHhhh
Q 012357 110 GNFDDPRLT--DYDTLLENIRGLKEGK----A-VQVP--IYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 110 ~vfQ~p~l~--~~~tv~enL~~l~~~~----~-~~~p--~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~ 171 (465)
|+||++.++ ...|+.+|+.+..... . .... ..-....+..+. ....+ ..|||.||+++
T Consensus 101 ~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL---- 176 (279)
T 2ihy_A 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARAL---- 176 (279)
T ss_dssp EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH----
T ss_pred EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH----
Confidence 999997643 3459999998742110 0 0000 000001111111 11112 23999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHH---HHHHHHHcCCCH--------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP--------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI--------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||++||+..... +++++.++|.|+ ++.+..+||++++|.+|+++..++..++
T Consensus 177 -~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 177 -MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp -HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred -hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 89999999999999999987554 456666568776 4667789999999999999877765554
No 24
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.94 E-value=3.2e-27 Score=233.20 Aligned_cols=186 Identities=13% Similarity=0.153 Sum_probs=141.3
Q ss_pred eeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccc
Q 012357 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~i 108 (465)
.+++++.|+. ..+|++|||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.+
T Consensus 19 ~~~l~~~y~~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 95 (271)
T 2ixe_A 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGK---VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV 95 (271)
T ss_dssp EEEEEECCTTCTTSCCEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred EEEEEEEeCCCCCceeeEeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccE
Confidence 4678888875 789999999999999 99999999999999999999999 99999999998763 2458
Q ss_pred ccccCCCCCCccchHHHHHHhhhccccc-c-c-------ccccc------ccccccCcccccc---ccchhhhhHhHHhh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGKAV-Q-V-------PIYDF------KSSSRIGYRTLEV---PSSRIVIIEGIYAL 170 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~~~-~-~-------p~~d~------~~~~~~~~~~~~l---~~qRVlIaegl~aL 170 (465)
+|+||++.+++ .|+.+|+.+....... . . ...++ ............+ ..|||.||+++
T Consensus 96 ~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL--- 171 (271)
T 2ixe_A 96 AAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL--- 171 (271)
T ss_dssp EEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH---
T ss_pred EEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH---
Confidence 99999999887 5999999875321110 0 0 00000 0001111111122 23999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHHHHHHH----cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR----VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e----~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||++||+.....+++-+.+ +|.|+ ++.+. .||++++|.+|+++..+...++
T Consensus 172 --~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~~l~~G~i~~~g~~~~l 243 (271)
T 2ixe_A 172 --IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHILFLKEGSVCEQGTHLQL 243 (271)
T ss_dssp --TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEEEEETTEEEEEECHHHH
T ss_pred --hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999986666554443 37777 56665 4999999999999988877665
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.94 E-value=3.7e-27 Score=229.76 Aligned_cols=187 Identities=17% Similarity=0.255 Sum_probs=141.5
Q ss_pred eeeeeeEeee--CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 38 PIEDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 38 ~v~~~ls~~~--g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
-..+++++.| +...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.++. ++.
T Consensus 8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 8 ITFRNIRFRYKPDSPVILDNINLSIKQGE---VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred eeEEEEEEEeCCCCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 3467899999 46789999999999999 99999999999999999999999 99999999998764 245
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccccc-cc-cc-ccccc-----------cccCcccccc---ccchhhhhHhHHhh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQ-VP-IY-DFKSS-----------SRIGYRTLEV---PSSRIVIIEGIYAL 170 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~-~p-~~-d~~~~-----------~~~~~~~~~l---~~qRVlIaegl~aL 170 (465)
++|+||++.+++ .|+.+|+.+........ .. .. ..... ...+.....+ ..|||.||+++
T Consensus 85 i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL--- 160 (247)
T 2ff7_A 85 VGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL--- 160 (247)
T ss_dssp EEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHH---
T ss_pred EEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHH---
Confidence 899999999886 59999998753111000 00 00 00000 0001011122 24999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||++||+.....++ +++ .+|.|+ ++.+. .||++++|.+|+++..+...++
T Consensus 161 --~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l 230 (247)
T 2ff7_A 161 --VNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKEL 230 (247)
T ss_dssp --TTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-HTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHH
T ss_pred --hcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999998765554 555 358887 45554 4999999999999988877765
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.94 E-value=3.9e-27 Score=229.78 Aligned_cols=185 Identities=17% Similarity=0.154 Sum_probs=138.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc--C-CCeeEEEECCeecC--------cccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDS--------SRII 108 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl--l-P~sG~I~lDg~~~~--------~~~i 108 (465)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+++|+|+ + |++|.|.++|.++. +..+
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 6 IRDLWASIDGETILKGVNLVVPKGE---VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred EEeEEEEECCEEEEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 4678999988899999999999999 9999999999999999999998 6 89999999998763 1247
Q ss_pred ccccCCCCCCccchHHHHHHhhhc---ccccc-----ccccc----ccc-ccccCccccc-c---ccchhhhhHhHHhhh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKE---GKAVQ-----VPIYD----FKS-SSRIGYRTLE-V---PSSRIVIIEGIYALS 171 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~---~~~~~-----~p~~d----~~~-~~~~~~~~~~-l---~~qRVlIaegl~aL~ 171 (465)
+|+||++.+++..|+.+|+.+... +.... ..... +.. .......... + ..|||.||+++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL---- 158 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLL---- 158 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHH----
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH----
Confidence 899999999999999999976431 11000 00000 001 0000101111 2 34999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHH-hceEEEccCcEEEecCCc
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQI-SETVYPMYKAFIEPDLQT 232 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i-~d~V~~m~~G~I~~~g~~ 232 (465)
..+|.++++||||++||+.....++ +++.++|.|+ .+.+..+ ||++++|++|+++..++.
T Consensus 159 -~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 159 -VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp -HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred -HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 8899999999999999999766555 4444457787 4566677 599999999999876653
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.94 E-value=5.3e-27 Score=227.82 Aligned_cols=185 Identities=20% Similarity=0.269 Sum_probs=139.7
Q ss_pred eeeeEeee-CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccccc
Q 012357 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (465)
Q Consensus 40 ~~~ls~~~-g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~ 110 (465)
.+++++.| +...+|++|||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.++|
T Consensus 4 ~~~l~~~y~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 4 ARHVDFAYDDSEQILRDISFEAQPNS---IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEECSSSSSCSEEEEEEEECTTE---EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEeCCCCceEEEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 46788888 66789999999999999 99999999999999999999999 99999999998753 356999
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccccccc----cccc---cc--------cCcccccc---ccchhhhhHhHHhhhh
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD----FKSS---SR--------IGYRTLEV---PSSRIVIIEGIYALSE 172 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d----~~~~---~~--------~~~~~~~l---~~qRVlIaegl~aL~d 172 (465)
+||++.+++ .|+.+|+.+............. .... ++ .+.....+ ..||+.||+++
T Consensus 81 v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral----- 154 (243)
T 1mv5_A 81 VSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF----- 154 (243)
T ss_dssp ECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH-----
T ss_pred EcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHH-----
Confidence 999999887 4999999875211100000000 0000 00 00011122 24999999999
Q ss_pred ccCcceeeeeeeecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 173 KLRPLIDLRVSVTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l---~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||++||+.. +.++++++. +|.|+ .+.+. .||++++|.+|+++..+...++
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 224 (243)
T 1mv5_A 155 LRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNEL 224 (243)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHH
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence 88999999999999999975 455566665 58887 55565 5999999999999887766554
No 28
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.94 E-value=9.8e-27 Score=227.59 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=138.9
Q ss_pred eeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCC
Q 012357 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (465)
Q Consensus 40 ~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l 117 (465)
.+++++.|+ ...+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+ ++.++|+||++.+
T Consensus 7 i~~l~~~y~~~~~vl~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~------~~~i~~v~q~~~~ 77 (253)
T 2nq2_C 7 VENLGFYYQAENFLFQQLNFDLNKGD---ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV------YQSIGFVPQFFSS 77 (253)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEETTC---EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE------CSCEEEECSCCCC
T ss_pred EeeEEEEeCCCCeEEEEEEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE------eccEEEEcCCCcc
Confidence 467888898 7889999999999999 99999999999999999999999 99999982 4579999999999
Q ss_pred CccchHHHHHHhhhccc-cc--cccccc----cccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 118 TDYDTLLENIRGLKEGK-AV--QVPIYD----FKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~~-~~--~~p~~d----~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++..|+.+|+.+..... .. ..+..+ ....+..+. ....+ ..|||.||+++ ..+|.++++
T Consensus 78 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL-----~~~p~lllL 152 (253)
T 2nq2_C 78 PFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAI-----ASECKLILL 152 (253)
T ss_dssp SSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH-----HTTCSEEEE
T ss_pred CCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHH-----HcCCCEEEE
Confidence 88899999998853211 00 000000 001111111 11122 23999999999 899999999
Q ss_pred eeeecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~rr---Ilrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
||||++||+..... +++++.++ |.|+ .+.+..+||++++|.+|+ +..++..++
T Consensus 153 DEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 153 DEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp SSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 99999999987554 45666665 8888 778889999999999998 766654443
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.93 E-value=8.5e-27 Score=227.63 Aligned_cols=182 Identities=7% Similarity=0.035 Sum_probs=136.8
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccccccc
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNF 112 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig~vf 112 (465)
+++++. .+|+++||++++|+ +++|+||||||||||+++|+|++ |+ |.|.++|.+.. ++.++|+|
T Consensus 8 ~~l~~~----~vl~~vsl~i~~Ge---~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~ 79 (249)
T 2qi9_C 8 QDVAES----TRLGPLSGEVRAGE---ILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLS 79 (249)
T ss_dssp EEEEET----TTEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EceEEE----EEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEEC
Confidence 445554 58999999999999 99999999999999999999999 88 99999998753 24589999
Q ss_pred CCCCCCccchHHHHHHhhhcccccccccc----ccccccccCcccccc---ccchhhhhHhHHhhhhccCcc-------e
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIY----DFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPL-------I 178 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p~~----d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~-------L 178 (465)
|++.+++..|+.+|+.+............ .+............+ ..||+.||+++ ..+|. +
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL-----~~~p~~~~~~~~l 154 (249)
T 2qi9_C 80 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV-----LQITPQANPAGQL 154 (249)
T ss_dssp SCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHH-----HHHCTTTCTTCCE
T ss_pred CCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH-----HcCCCcCCCCCeE
Confidence 99999888999999987531110000000 001111111111122 24999999999 77888 9
Q ss_pred eeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 179 DLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 179 dllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+++||||++||+..... +++++.++|.|+ .+.+..+||++++|++|+++..+...++
T Consensus 155 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 155 LLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999987554 456666568887 7788899999999999999876655443
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.93 E-value=2.8e-26 Score=225.96 Aligned_cols=188 Identities=14% Similarity=0.111 Sum_probs=141.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc--C-CCeeEEEECCeecCc--------ccc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS--------RII 108 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl--l-P~sG~I~lDg~~~~~--------~~i 108 (465)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+++|+|+ . |++|.|.++|.++.. +.+
T Consensus 23 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 99 (267)
T 2zu0_C 23 IKDLHVSVEDKAILRGLSLDVHPGE---VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGI 99 (267)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCE
Confidence 4678888888899999999999999 9999999999999999999999 4 789999999987531 238
Q ss_pred ccccCCCCCCccchHHHHHHhhhc------ccc-cccccc---ccccccccCc------cc-c-cc---ccchhhhhHhH
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKE------GKA-VQVPIY---DFKSSSRIGY------RT-L-EV---PSSRIVIIEGI 167 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~------~~~-~~~p~~---d~~~~~~~~~------~~-~-~l---~~qRVlIaegl 167 (465)
+|+||++.+++..|+.+++..... +.. ...... -....+..+. .. . .+ ..|||.||+++
T Consensus 100 ~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL 179 (267)
T 2zu0_C 100 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 179 (267)
T ss_dssp EEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHH
T ss_pred EEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence 899999999999999999876421 100 000000 0000111111 11 1 13 23999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHHHHHH---HcCCCH------HHHHHHH-hceEEEccCcEEEecCCcceE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ---RVGQEP------EEIIHQI-SETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~---e~G~TI------~~vi~~i-~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||++||+.....+++-+. ++|.|+ ++.+..+ ||++++|.+|+++..++..++
T Consensus 180 -----~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 180 -----VLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 252 (267)
T ss_dssp -----HHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHH
T ss_pred -----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHH
Confidence 88999999999999999997766654443 347787 4556665 899999999999887776654
No 31
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.93 E-value=5.6e-27 Score=242.64 Aligned_cols=187 Identities=10% Similarity=0.066 Sum_probs=142.2
Q ss_pred eeeeeEeee--CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------ccccc
Q 012357 39 IEDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 39 v~~~ls~~~--g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~-------~~~ig 109 (465)
-.+++++.| +...+|++|||++++|+ +++|+||||||||||+++|+|+++++|.|.++|.++. ++.++
T Consensus 21 ~~~~l~~~y~~~~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig 97 (390)
T 3gd7_A 21 TVKDLTAKYTEGGNAILENISFSISPGQ---RVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFG 97 (390)
T ss_dssp EEEEEEEESSSSSCCSEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEE
T ss_pred EEEEEEEEecCCCeEEeeceeEEEcCCC---EEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEE
Confidence 457888999 67889999999999999 9999999999999999999999988999999998764 35799
Q ss_pred cccCCCCCCccchHHHHHHhhhcccccccc-cc-cccc---ccccCcc----------ccc-cccchhhhhHhHHhhhhc
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVP-IY-DFKS---SSRIGYR----------TLE-VPSSRIVIIEGIYALSEK 173 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p-~~-d~~~---~~~~~~~----------~~~-l~~qRVlIaegl~aL~d~ 173 (465)
|+||++.+|+ .|+.+|+............ .. .... .++...+ .++ ...|||.||+|+ .
T Consensus 98 ~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL-----~ 171 (390)
T 3gd7_A 98 VIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV-----L 171 (390)
T ss_dssp EESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH-----H
T ss_pred EEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH-----h
Confidence 9999999987 6999999743211000000 00 0000 0000000 011 124999999999 8
Q ss_pred cCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
.+|.++++||||++||+....++...+.+ .|.|+ ++.+ .+||++++|++|+|+..|...++
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el 240 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILEL 240 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999987777666654 36676 4434 45999999999999999998887
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.93 E-value=4.6e-26 Score=224.16 Aligned_cols=185 Identities=13% Similarity=0.101 Sum_probs=141.7
Q ss_pred eeeeEeeeCc----EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC----ccccc-c
Q 012357 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----SRIID-G 110 (465)
Q Consensus 40 ~~~ls~~~g~----~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~----~~~ig-~ 110 (465)
.+++++.|+. ..+|+++||+++ |+ +++|+||||||||||+++|+|++|++|.|.++|.+.. ++.++ |
T Consensus 4 ~~~l~~~y~~~~~~~~il~~vsl~i~-Ge---~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 4 LKNVGITLSGKGYERFSLENINLEVN-GE---KVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEC-SS---EEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEeCCCCccceeEEeeeEEEC-CE---EEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEE
Confidence 4678888876 789999999999 99 9999999999999999999999999999999998653 45799 9
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccccc-----cccccc-cccCcccccc---ccchhhhhHhHHhhhhccCcceeee
Q 012357 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPI-----YDFKSS-SRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 111 vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~-----~d~~~~-~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
+||++.+ ..|+.+|+.+........... ..+... .........+ ..||+.||+++ ..+|.++++
T Consensus 80 v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL-----~~~p~lllL 152 (263)
T 2pjz_A 80 LPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL-----ASQPEIVGL 152 (263)
T ss_dssp CGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHH-----HTCCSEEEE
T ss_pred eCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH-----HhCCCEEEE
Confidence 9999987 789999998753211000000 000111 1111111122 24999999999 899999999
Q ss_pred eeeecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhc-eEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISE-TVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d-~V~~m~~G~I~~~g~~aDI 235 (465)
||||++||+....++.+.+.+...|+ ++.+..+|| ++++|++|++...++..++
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l 213 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSEL 213 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHH
T ss_pred ECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHH
Confidence 99999999998888777776543266 566788999 9999999999887766654
No 33
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.93 E-value=1.9e-26 Score=220.34 Aligned_cols=171 Identities=13% Similarity=0.093 Sum_probs=126.8
Q ss_pred eeeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec--CccccccccCCC
Q 012357 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRIIDGNFDDP 115 (465)
Q Consensus 39 v~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~--~~~~ig~vfQ~p 115 (465)
-.+++++.|+. .+|+++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.+. .++.++|+||++
T Consensus 12 ~~~~ls~~y~~-~il~~vsl~i~~Ge---~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 12 EIRDLSVGYDK-PVLERITMTIEKGN---VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 87 (214)
T ss_dssp EEEEEEEESSS-EEEEEEEEEEETTC---CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred EEEEEEEEeCC-eEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence 35778999988 99999999999999 99999999999999999999999 9999999999875 245799999999
Q ss_pred CCCccchHHHHHHhhhccc--cccccccccccccccCc-----ccccc---ccchhhhhHhHHhhhhccCcceeeeeeee
Q 012357 116 RLTDYDTLLENIRGLKEGK--AVQVPIYDFKSSSRIGY-----RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (465)
Q Consensus 116 ~l~~~~tv~enL~~l~~~~--~~~~p~~d~~~~~~~~~-----~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpt 185 (465)
.+++..|+.+|+.+..... ....... ....+..+. ....+ ..||+.||+++ ..+|.++++||||
T Consensus 88 ~~~~~~tv~enl~~~~~~~~~~~~~~~~-~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL-----~~~p~lllLDEPt 161 (214)
T 1sgw_A 88 IVPRKISVEDYLKAVASLYGVKVNKNEI-MDALESVEVLDLKKKLGELSQGTIRRVQLASTL-----LVNAEIYVLDDPV 161 (214)
T ss_dssp CCCTTSBHHHHHHHHHHHTTCCCCHHHH-HHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHT-----TSCCSEEEEESTT
T ss_pred cCCCCCCHHHHHHHHHHhcCCchHHHHH-HHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHH-----HhCCCEEEEECCC
Confidence 9998899999998753210 0000000 000111111 11122 24999999999 9999999999999
Q ss_pred cCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEE
Q 012357 186 GGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVY 219 (465)
Q Consensus 186 s~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~ 219 (465)
++||+....+ +++++.++|.|+ .+.+..+||+++
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999986544 445555556665 344455555544
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.93 E-value=8.2e-26 Score=217.66 Aligned_cols=180 Identities=16% Similarity=0.090 Sum_probs=136.3
Q ss_pred eeeeEeeeC--cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCC
Q 012357 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (465)
Q Consensus 40 ~~~ls~~~g--~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~ 116 (465)
.+++++.|+ ...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++| .++|+||++.
T Consensus 9 ~~~l~~~y~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------~i~~v~q~~~ 79 (229)
T 2pze_A 9 MENVTAFWEEGGTPVLKDINFKIERGQ---LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------RISFCSQFSW 79 (229)
T ss_dssp EEEEEECSSTTSCCSEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS------CEEEECSSCC
T ss_pred EEEEEEEeCCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC------EEEEEecCCc
Confidence 467888884 5789999999999999 99999999999999999999999 9999999998 4899999999
Q ss_pred CCccchHHHHHHhhhcccccccc-c-cccccc---cc--------cCcccccc---ccchhhhhHhHHhhhhccCcceee
Q 012357 117 LTDYDTLLENIRGLKEGKAVQVP-I-YDFKSS---SR--------IGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 117 l~~~~tv~enL~~l~~~~~~~~p-~-~d~~~~---~~--------~~~~~~~l---~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
+++. |+.+|+.+.......... . ...... .. .+.....+ ..||+.||+++ ..+|.+++
T Consensus 80 ~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral-----~~~p~lll 153 (229)
T 2pze_A 80 IMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV-----YKDADLYL 153 (229)
T ss_dssp CCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHH-----HSCCSEEE
T ss_pred ccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 8885 999999874311000000 0 000000 00 00001122 24999999999 89999999
Q ss_pred eeeeecCccHHHHHHHHHHH-H--HcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 181 RVSVTGGVHFDLVKRVFRDI-Q--RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 181 lDEpts~LD~~l~rrIlrdl-~--e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+||||++||+....++.+.+ . .+|.|+ .+.+. .||++++|++|+++..+...++
T Consensus 154 LDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 216 (229)
T 2pze_A 154 LDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSEL 216 (229)
T ss_dssp EESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHH
T ss_pred EECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence 99999999999887777643 2 237777 55555 5999999999999888776655
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.92 E-value=3.4e-26 Score=221.50 Aligned_cols=180 Identities=14% Similarity=0.100 Sum_probs=136.2
Q ss_pred eeeeEeeeC--cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCC
Q 012357 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (465)
Q Consensus 40 ~~~ls~~~g--~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~ 116 (465)
.+++++.|+ ...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++| .++|+||++.
T Consensus 6 ~~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------~i~~v~Q~~~ 76 (237)
T 2cbz_A 6 VRNATFTWARSDPPTLNGITFSIPEGA---LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------SVAYVPQQAW 76 (237)
T ss_dssp EEEEEEESCTTSCCSEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------CEEEECSSCC
T ss_pred EEEEEEEeCCCCCceeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------EEEEEcCCCc
Confidence 467888887 5789999999999999 99999999999999999999999 9999999998 4899999987
Q ss_pred CCccchHHHHHHhhhcccccccc-ccc-cccccc-----------cCcccccc---ccchhhhhHhHHhhhhccCcceee
Q 012357 117 LTDYDTLLENIRGLKEGKAVQVP-IYD-FKSSSR-----------IGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDL 180 (465)
Q Consensus 117 l~~~~tv~enL~~l~~~~~~~~p-~~d-~~~~~~-----------~~~~~~~l---~~qRVlIaegl~aL~d~~~p~Ldl 180 (465)
+ +..|+.+|+.+.......... ... ....+. .+.....+ ..|||.||+++ ..+|.+++
T Consensus 77 ~-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL-----~~~p~lll 150 (237)
T 2cbz_A 77 I-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV-----YSNADIYL 150 (237)
T ss_dssp C-CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH-----HHCCSEEE
T ss_pred C-CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 5 477999999875321100000 000 000000 11111122 24999999999 88999999
Q ss_pred eeeeecCccHHHHHHHHHHHH-----HcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 181 RVSVTGGVHFDLVKRVFRDIQ-----RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 181 lDEpts~LD~~l~rrIlrdl~-----e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
+||||++||+.....+++.+. .+|.|+ .+.+. +||++++|.+|+++..++..++
T Consensus 151 LDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 215 (237)
T 2cbz_A 151 FDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQEL 215 (237)
T ss_dssp EESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHH
T ss_pred EeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999998777776652 247777 34444 6999999999999887776654
No 36
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.92 E-value=5.4e-26 Score=223.07 Aligned_cols=187 Identities=15% Similarity=0.128 Sum_probs=137.8
Q ss_pred eeeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------cccc
Q 012357 39 IEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRII 108 (465)
Q Consensus 39 v~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~-------~~~i 108 (465)
-.+++++.|+. ..+|++|||++++|+ ++||+||||||||||+++|+|+++.+|.|.++|.++. ++.+
T Consensus 19 ~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 19 EFSDVNFSYPKQTNHRTLKSINFFIPSGT---TCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp EEEEEEECCTTCCSSCSEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTE
T ss_pred EEEEEEEEeCCCCcCceeEeeEEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccE
Confidence 35678888865 469999999999999 9999999999999999999999944899999998763 3569
Q ss_pred ccccCCCCCCccchHHHHHHhhhcccccc-cc-cc-ccccccc-----------cCcccccc---ccchhhhhHhHHhhh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQ-VP-IY-DFKSSSR-----------IGYRTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~~~~-~p-~~-d~~~~~~-----------~~~~~~~l---~~qRVlIaegl~aL~ 171 (465)
+|+||++.+++ .|+.+|+.+........ .. .. .....+. .+.....+ ..|||.||+++
T Consensus 96 ~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL---- 170 (260)
T 2ghi_A 96 GIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL---- 170 (260)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH----
T ss_pred EEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH----
Confidence 99999999886 59999998743111000 00 00 0000000 00011122 24999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
..+|.++++||||++||+.....+...+.+ +|.|+ ++.+. .||++++|.+|+++..++..++
T Consensus 171 -~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 240 (260)
T 2ghi_A 171 -LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDL 240 (260)
T ss_dssp -HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHH
T ss_pred -HcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence 889999999999999999976655543332 37777 44454 5999999999999888876665
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.92 E-value=1.3e-24 Score=236.07 Aligned_cols=188 Identities=18% Similarity=0.194 Sum_probs=143.2
Q ss_pred eeeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 39 IEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 39 v~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
-.++++|.|+. .++|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+||.++. ++.
T Consensus 343 ~~~~v~~~y~~~~~~~vl~~isl~i~~G~---~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 419 (595)
T 2yl4_A 343 EFKNVHFAYPARPEVPIFQDFSLSIPSGS---VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSK 419 (595)
T ss_dssp EEEEEEEECSSCTTSEEEEEEEEEECTTC---EEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHS
T ss_pred EEEEEEEEeCCCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 45789999964 479999999999999 99999999999999999999999 99999999998864 346
Q ss_pred cccccCCCCCCccchHHHHHHhhhccc-ccccccc----------cc------ccccccCcccccc---ccchhhhhHhH
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGK-AVQVPIY----------DF------KSSSRIGYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~-~~~~p~~----------d~------~~~~~~~~~~~~l---~~qRVlIaegl 167 (465)
++++||+|.+++ .|+++|+.+..... ....... ++ ......+.....+ ..||+.||+|+
T Consensus 420 i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral 498 (595)
T 2yl4_A 420 IGTVSQEPILFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498 (595)
T ss_dssp EEEECSSCCCCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHH
T ss_pred eEEEccCCcccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH
Confidence 999999999987 59999998754220 0000000 00 0011111111122 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+.....+.+.+.+ +|+|+ .+.+. .||++++|++|++++.|++.++.
T Consensus 499 -----~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 499 -----LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp -----HHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECSCC--
T ss_pred -----HcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence 889999999999999999987666654443 37777 56665 59999999999999999998875
No 38
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=2.2e-25 Score=241.87 Aligned_cols=189 Identities=16% Similarity=0.192 Sum_probs=146.4
Q ss_pred eeeeeeEeeeC--cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccc
Q 012357 38 PIEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (465)
Q Consensus 38 ~v~~~ls~~~g--~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ 107 (465)
--.++++|.|+ ..++|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+||.++. ++.
T Consensus 342 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge---~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 342 VSFENVEFRYFENTDPVLSGVNFSVKPGS---LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTC---EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred EEEEEEEEEcCCCCCcceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 34578999994 5689999999999999 99999999999999999999999 99999999999764 356
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccccc-c-------ccccc------ccccccCcccccc---ccchhhhhHhHHhh
Q 012357 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQ-V-------PIYDF------KSSSRIGYRTLEV---PSSRIVIIEGIYAL 170 (465)
Q Consensus 108 ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~-~-------p~~d~------~~~~~~~~~~~~l---~~qRVlIaegl~aL 170 (465)
++|+||+|.+++. |+++|+.+........ . ...++ ......+.....+ ..||+.||+|+
T Consensus 419 i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal--- 494 (587)
T 3qf4_A 419 ISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARAL--- 494 (587)
T ss_dssp EEEECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHH---
T ss_pred eEEECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHH---
Confidence 9999999999865 9999998753211100 0 00000 0111111111112 34999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+...+++.+.+.+ +|+|+ .+.+. .||++++|++|++++.|++.++.
T Consensus 495 --~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~ 565 (587)
T 3qf4_A 495 --VKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELL 565 (587)
T ss_dssp --HTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHH
T ss_pred --HcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 889999999999999999987777765544 47887 56554 89999999999999999988773
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.91 E-value=8.6e-25 Score=236.90 Aligned_cols=188 Identities=13% Similarity=0.132 Sum_probs=144.5
Q ss_pred eeeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccc
Q 012357 39 IEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (465)
Q Consensus 39 v~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~i 108 (465)
-.++++|.|+. ..+|+++||++++|+ ++||+||||||||||+++|+|+. |++|.|.+||.++. ++.+
T Consensus 343 ~~~~v~~~y~~~~~~~l~~i~l~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 343 DVKDVTFTYQGKEKPALSHVSFSIPQGK---TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred EEEEEEEEcCCCCccccccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 45789999974 689999999999999 99999999999999999999999 99999999998753 3579
Q ss_pred ccccCCCCCCccchHHHHHHhhh-cccccc-cc-------cccc------ccccccCcccccc---ccchhhhhHhHHhh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLK-EGKAVQ-VP-------IYDF------KSSSRIGYRTLEV---PSSRIVIIEGIYAL 170 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~-~~~~~~-~p-------~~d~------~~~~~~~~~~~~l---~~qRVlIaegl~aL 170 (465)
+|+||+|.+++ .|+++|+.+.. .....+ .. ..++ .....++.....+ ..||+.||+++
T Consensus 420 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral--- 495 (582)
T 3b5x_A 420 ALVSQNVHLFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL--- 495 (582)
T ss_pred EEEcCCCcccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH---
Confidence 99999999987 49999998754 111100 00 0000 0001111111112 34999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+....++.+.+.+ +|+|+ .+.+. .||++++|++|++++.|++.++.
T Consensus 496 --~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 496 --LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred --HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 889999999999999999987766654443 37777 55555 69999999999999999888773
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.91 E-value=3.4e-25 Score=239.95 Aligned_cols=188 Identities=18% Similarity=0.147 Sum_probs=143.8
Q ss_pred eeeeeEeeeC--cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccc
Q 012357 39 IEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (465)
Q Consensus 39 v~~~ls~~~g--~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~i 108 (465)
-.++++|.|+ ..++|+|+||++++|+ ++||+||||||||||+++|+|++ |++|.|.+||.++. ++.+
T Consensus 341 ~~~~v~~~y~~~~~~~l~~isl~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 341 DIDHVSFQYNDNEAPILKDINLSIEKGE---TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp EEEEEEECSCSSSCCSEEEEEEEECTTC---EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred EEEEEEEEcCCCCCcceeeeEEEECCCC---EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 4578999996 3679999999999999 99999999999999999999999 99999999999864 3569
Q ss_pred ccccCCCCCCccchHHHHHHhhhcccccc-c-------cccc------cccccccCcccccc---ccchhhhhHhHHhhh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQ-V-------PIYD------FKSSSRIGYRTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~~~~~~~-~-------p~~d------~~~~~~~~~~~~~l---~~qRVlIaegl~aL~ 171 (465)
+|+||+|.+++. |+++|+.+.......+ . ...+ .......+.....+ ..||+.||+|+
T Consensus 418 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral---- 492 (578)
T 4a82_A 418 GLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF---- 492 (578)
T ss_dssp EEECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH----
T ss_pred EEEeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHH----
Confidence 999999999875 9999998753211100 0 0000 00111111111122 34999999999
Q ss_pred hccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+.....+.+.+.+ +|+|+ ++.+. .||++++|++|++++.|++.++.
T Consensus 493 -~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~el~ 563 (578)
T 4a82_A 493 -LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELI 563 (578)
T ss_dssp -HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred -HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence 889999999999999999976666554433 46776 45554 49999999999999999988773
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=5.1e-25 Score=239.54 Aligned_cols=188 Identities=15% Similarity=0.161 Sum_probs=144.1
Q ss_pred eeeeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------ccccc
Q 012357 39 IEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (465)
Q Consensus 39 v~~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~ig 109 (465)
-.++++|.|+ ..++|+|+||++++|+ ++||+||||||||||+++|+|++ |++|.|.+||.++. ++.++
T Consensus 356 ~~~~v~~~y~~~~~~l~~isl~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 356 EFKNVWFSYDKKKPVLKDITFHIKPGQ---KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp EEEEEECCSSSSSCSCCSEEEECCTTC---EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEEEECCCCCccccceEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 4578999996 4679999999999999 99999999999999999999999 99999999999864 35699
Q ss_pred cccCCCCCCccchHHHHHHhhhcccccc-cc-c------ccc------ccccccCcccccc---ccchhhhhHhHHhhhh
Q 012357 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQ-VP-I------YDF------KSSSRIGYRTLEV---PSSRIVIIEGIYALSE 172 (465)
Q Consensus 110 ~vfQ~p~l~~~~tv~enL~~l~~~~~~~-~p-~------~d~------~~~~~~~~~~~~l---~~qRVlIaegl~aL~d 172 (465)
++||+|.+++ .|+++|+.+........ .. . .++ .....++.....+ ..||+.||+|+
T Consensus 433 ~v~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral----- 506 (598)
T 3qf4_B 433 IVLQDTILFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF----- 506 (598)
T ss_dssp EECTTCCCCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHH-----
T ss_pred EEeCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH-----
Confidence 9999999886 59999998753211100 00 0 000 0000000000112 24999999999
Q ss_pred ccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 173 ~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+.....+.+.+.+ +|+|+ .+.+.. ||++++|++|++++.|++.++.
T Consensus 507 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 577 (598)
T 3qf4_B 507 LANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELI 577 (598)
T ss_dssp HTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 889999999999999999977666544433 48777 455554 9999999999999999988874
No 42
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.91 E-value=9.2e-25 Score=236.70 Aligned_cols=188 Identities=15% Similarity=0.150 Sum_probs=143.4
Q ss_pred eeeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cccc
Q 012357 39 IEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (465)
Q Consensus 39 v~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~~i 108 (465)
-.++++|.|+. ..+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+||.++. ++.+
T Consensus 343 ~~~~v~~~y~~~~~~~l~~v~~~i~~G~---~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 343 EFRNVTFTYPGREVPALRNINLKIPAGK---TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp EEEEEEECSSSSSCCSEEEEEEEECTTC---EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred EEEEEEEEcCCCCCccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 45789999973 789999999999999 99999999999999999999999 99999999998864 3469
Q ss_pred ccccCCCCCCccchHHHHHHhhh-cccccc-cc-------cccc------ccccccCcccccc---ccchhhhhHhHHhh
Q 012357 109 DGNFDDPRLTDYDTLLENIRGLK-EGKAVQ-VP-------IYDF------KSSSRIGYRTLEV---PSSRIVIIEGIYAL 170 (465)
Q Consensus 109 g~vfQ~p~l~~~~tv~enL~~l~-~~~~~~-~p-------~~d~------~~~~~~~~~~~~l---~~qRVlIaegl~aL 170 (465)
+|+||+|.+++. |+++|+.+.. .....+ .. ..++ .....++.....+ ..||+.||+++
T Consensus 420 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral--- 495 (582)
T 3b60_A 420 ALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL--- 495 (582)
T ss_dssp EEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH---
T ss_pred eEEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH---
Confidence 999999999874 9999998754 211100 00 0000 0001111111122 24999999999
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+....++.+.+.+ +|+|+ .+.+. .||++++|++|++++.|++.++.
T Consensus 496 --~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b60_A 496 --LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELL 566 (582)
T ss_dssp --HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred --HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHH
Confidence 889999999999999999986666544432 37777 45554 69999999999999999887763
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.89 E-value=9.6e-24 Score=210.42 Aligned_cols=176 Identities=16% Similarity=0.119 Sum_probs=127.6
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCCc
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~ 119 (465)
+++++. ...+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++| .++|+||++.+++
T Consensus 44 ~~l~~~--~~~vl~~isl~i~~Ge---~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------~i~~v~Q~~~l~~ 112 (290)
T 2bbs_A 44 SNFSLL--GTPVLKDINFKIERGQ---LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------RISFCSQNSWIMP 112 (290)
T ss_dssp --------CCCSEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS------CEEEECSSCCCCS
T ss_pred EEEEEc--CceEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC------EEEEEeCCCccCc
Confidence 556664 3579999999999999 99999999999999999999999 8999999998 4899999999888
Q ss_pred cchHHHHHHhhhcccccccc-c-cccccc---cccC--------cccccc---ccchhhhhHhHHhhhhccCcceeeeee
Q 012357 120 YDTLLENIRGLKEGKAVQVP-I-YDFKSS---SRIG--------YRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVS 183 (465)
Q Consensus 120 ~~tv~enL~~l~~~~~~~~p-~-~d~~~~---~~~~--------~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDE 183 (465)
. |+.+|+. .......... . ...... .... .....+ ..||+.||+++ ..+|.++++||
T Consensus 113 ~-tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL-----~~~p~lllLDE 185 (290)
T 2bbs_A 113 G-TIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV-----YKDADLYLLDS 185 (290)
T ss_dssp S-BHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHH-----HSCCSEEEEES
T ss_pred c-cHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHH-----HCCCCEEEEEC
Confidence 5 9999997 3211000000 0 000000 0000 000122 24999999999 89999999999
Q ss_pred eecCccHHHHHHHHHHH-H--HcCCCH------HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 184 VTGGVHFDLVKRVFRDI-Q--RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 184 pts~LD~~l~rrIlrdl-~--e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
||++||+....++.+.+ . .+|.|+ ++.+. .||++++|.+|++...|+..++
T Consensus 186 Pts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 186 PFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp TTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHH
Confidence 99999999887776642 1 237777 55565 5999999999999887776654
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.88 E-value=4.6e-24 Score=250.20 Aligned_cols=190 Identities=20% Similarity=0.212 Sum_probs=147.6
Q ss_pred eeeeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cc
Q 012357 38 PIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (465)
Q Consensus 38 ~v~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~ 106 (465)
--.++++|.|.. .++|+||||++++|+ .+||+|+||||||||+++|.++. |++|.|.+||.++. |+
T Consensus 1077 I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge---~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQ---TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp EEEEEEEECCTTSCSSCSEEEEEEEECTTC---EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred EEEEEEEEeCCCCCCCccccceeEEECCCC---EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHh
Confidence 456889999953 469999999999999 99999999999999999999999 99999999999875 57
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccccccc----------ccccc------ccccccCc--ccccc-ccchhhhhHhH
Q 012357 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV----------PIYDF------KSSSRIGY--RTLEV-PSSRIVIIEGI 167 (465)
Q Consensus 107 ~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~----------p~~d~------~~~~~~~~--~~~~l-~~qRVlIaegl 167 (465)
++++++|+|.+|+ .|+++||.+......... ...++ .....++. ...+. ..||+.||||+
T Consensus 1154 ~i~~V~Qdp~LF~-gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFD-CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp TEEEECSSCCCCS-EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred heEEECCCCEeeC-ccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 8999999999996 599999976532111100 00000 11111111 11111 34999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCHHHHHHH-----HhceEEEccCcEEEecCCcceEE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEPEEIIHQ-----ISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI~~vi~~-----i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
.-+|.++++||||+++|+++-+.+.+.+.+ +|+|+.-+.|+ -||+|++|++|+|++.|++.+++
T Consensus 1233 -----lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl 1303 (1321)
T 4f4c_A 1233 -----VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLM 1303 (1321)
T ss_dssp -----HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHH
T ss_pred -----HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 779999999999999999988887777765 38887333332 48999999999999999999885
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.87 E-value=9e-23 Score=238.75 Aligned_cols=189 Identities=19% Similarity=0.237 Sum_probs=144.7
Q ss_pred eeeeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cc
Q 012357 38 PIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (465)
Q Consensus 38 ~v~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~ 106 (465)
--.++++|.|+. .++|+||||++++|+ ++||+||||||||||+++|.|+. |++|.|.+||.++. ++
T Consensus 388 i~~~~v~~~y~~~~~~~vL~~isl~i~~G~---~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQ---TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp EEEEEEEECCSSTTSCCSEEEEEEEECTTC---EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred EEEEEEEEEcCCCCCCcceecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 345789999963 479999999999999 99999999999999999999999 99999999999864 35
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccccc---cc-----cccc------cccccccCcccccc---ccchhhhhHhHHh
Q 012357 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAV---QV-----PIYD------FKSSSRIGYRTLEV---PSSRIVIIEGIYA 169 (465)
Q Consensus 107 ~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~---~~-----p~~d------~~~~~~~~~~~~~l---~~qRVlIaegl~a 169 (465)
.+++++|+|.+++. |+++|+.+....... .. ...+ ......++..-..+ ..||+.||+|+
T Consensus 465 ~i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal-- 541 (1284)
T 3g5u_A 465 IIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL-- 541 (1284)
T ss_dssp HEEEECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHH--
T ss_pred heEEEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHH--
Confidence 69999999999875 999999986432110 00 0000 00111111111112 34999999999
Q ss_pred hhhccCcceeeeeeeecCccHHHHHHHHHHHH--HcCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ--RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 170 L~d~~~p~LdllDEpts~LD~~l~rrIlrdl~--e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||++||+...+.+.+.+. .+|+|+ .+.+.. ||+|++|++|++++.|++.++.
T Consensus 542 ---~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~ 612 (1284)
T 3g5u_A 542 ---VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELM 612 (1284)
T ss_dssp ---HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHH
T ss_pred ---hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 78999999999999999987665554443 348887 666655 9999999999999999887753
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.86 E-value=1.1e-22 Score=237.95 Aligned_cols=189 Identities=18% Similarity=0.212 Sum_probs=144.3
Q ss_pred eeeeeeEeeeCc---EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------cc
Q 012357 38 PIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (465)
Q Consensus 38 ~v~~~ls~~~g~---~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------~~ 106 (465)
--.++++|.|+. .++|+++||++++|+ ++||+||||||||||+++|.|+. |++|.|.+||.++. ++
T Consensus 1031 i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge---~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQ---TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp EEEEEEEBCCSCGGGCCSBSSCCEEECSSS---EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred EEEEEEEEECCCCCCCeeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 345789999963 469999999999999 99999999999999999999999 99999999998764 46
Q ss_pred ccccccCCCCCCccchHHHHHHhhhcccccccc----------c------cccccccccCcccccc---ccchhhhhHhH
Q 012357 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP----------I------YDFKSSSRIGYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 107 ~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p----------~------~d~~~~~~~~~~~~~l---~~qRVlIaegl 167 (465)
.++++||+|.+++ .|+++|+.+.......... . ........++..-..+ ..||+.||+++
T Consensus 1108 ~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1108 QLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp SCEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred ceEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 7999999998875 6999999764321110000 0 0000111111111112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
..+|.++++||||+++|+.....+.+.+.+ +|+|+ ++.+. .||+|++|++|++++.|++.++.
T Consensus 1187 -----~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~-~~dri~vl~~G~i~~~g~~~~l~ 1257 (1284)
T 3g5u_A 1187 -----VRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ-NADLIVVIQNGKVKEHGTHQQLL 1257 (1284)
T ss_dssp -----HHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGG-SCSEEEEEETBEEEEEECHHHHH
T ss_pred -----HcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence 889999999999999999976666655543 48887 45554 49999999999999999988874
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.86 E-value=1e-22 Score=238.94 Aligned_cols=216 Identities=16% Similarity=0.167 Sum_probs=157.2
Q ss_pred CCCccccccccceeeeeccCcc----eeeceeeeeeeEeeeC---cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHH
Q 012357 11 SPRRRPGLLRDQVQLVKKKDSD----RYEIVPIEDTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (465)
Q Consensus 11 ~~~~~~~l~~~~~~l~~~~~~k----~y~~~~v~~~ls~~~g---~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~ 83 (465)
+.+|...++..++.+....... .....-..+|++|.|+ +.++|+|+||++++|+ .++|+||||||||||+
T Consensus 385 s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~---~vaivG~sGsGKSTll 461 (1321)
T 4f4c_A 385 AASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQ---TVALVGSSGCGKSTII 461 (1321)
T ss_dssp HHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTC---EEEEEECSSSCHHHHH
T ss_pred HHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCc---EEEEEecCCCcHHHHH
Confidence 3456666665554443332211 1122345689999995 4679999999999999 9999999999999999
Q ss_pred HHHHhcC-CCeeEEEECCeecC-------ccccccccCCCCCCccchHHHHHHhhhcccccc--------------cccc
Q 012357 84 EKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ--------------VPIY 141 (465)
Q Consensus 84 r~L~gll-P~sG~I~lDg~~~~-------~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~--------------~p~~ 141 (465)
+.|.|+. |++|.|.+||.++. ++.++|++|+|.+|+ .|+++||.+.......+ ....
T Consensus 462 ~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~l 540 (1321)
T 4f4c_A 462 SLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGKEGITREEMVAACKMANAEKFIKTL 540 (1321)
T ss_dssp HHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHS
T ss_pred HHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeC-CchhHHHhhhcccchHHHHHHHHHHccchhHHHcC
Confidence 9999999 99999999999865 457999999999886 69999999864321100 0000
Q ss_pred ccccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHH
Q 012357 142 DFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEI 210 (465)
Q Consensus 142 d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~v 210 (465)
.......++..-..+ ..||+.||||+ .-+|.++++||||+++|++..+.+.+.+.+ +|+|+ ...
T Consensus 541 p~G~~T~vGe~G~~LSGGQkQRiaiARAl-----~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~ 615 (1321)
T 4f4c_A 541 PNGYNTLVGDRGTQLSGGQKQRIAIARAL-----VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST 615 (1321)
T ss_dssp TTTTSSEESSSSCCCCHHHHHHHHHHHHH-----TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTT
T ss_pred CCCCccEecCCCCCCCHHHHHHHHHHHHH-----ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHH
Confidence 011111222111122 34999999999 779999999999999999875555554443 47777 333
Q ss_pred HHHHhceEEEccCcEEEecCCcceEE
Q 012357 211 IHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 211 i~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+ +.||+|++|++|+|++.|.+.++.
T Consensus 616 i-~~aD~Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 616 I-RNADLIISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp T-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred H-HhCCEEEEeeCCeeeccCCHHHHH
Confidence 3 469999999999999999999985
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.84 E-value=5.7e-21 Score=205.36 Aligned_cols=180 Identities=14% Similarity=0.118 Sum_probs=131.4
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCCc
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~ 119 (465)
+++++.|+.. .+++++|++.+|+ ++||+||||||||||+++|+|++ |++|.|.+ ...++|+||++...+
T Consensus 291 ~~l~~~~~~~-~l~~~~~~i~~Ge---~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------~~~i~~v~Q~~~~~~ 360 (538)
T 1yqt_A 291 PRLVKDYGSF-RLEVEPGEIKKGE---VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------DLTVAYKPQYIKADY 360 (538)
T ss_dssp CCEEEEETTE-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------CCCEEEECSSCCCCC
T ss_pred eeEEEEECCE-EEEeCccccCCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE------CceEEEEecCCcCCC
Confidence 5677778764 6899999999999 99999999999999999999999 89999976 246999999988777
Q ss_pred cchHHHHHHhh-hcccccccc---c-cccccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHH
Q 012357 120 YDTLLENIRGL-KEGKAVQVP---I-YDFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD 191 (465)
Q Consensus 120 ~~tv~enL~~l-~~~~~~~~p---~-~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~ 191 (465)
..|+.+++... ......... . ..+............+ ..|||+||+++ ..+|.++++||||++||+.
T Consensus 361 ~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL-----~~~p~lLlLDEPt~~LD~~ 435 (538)
T 1yqt_A 361 EGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATL-----LRDADIYLLDEPSAYLDVE 435 (538)
T ss_dssp SSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHH-----TSCCSEEEEECTTTTCCHH
T ss_pred CCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH-----HhCCCEEEEeCCcccCCHH
Confidence 78998887654 111000000 0 0000111111011122 24999999999 9999999999999999998
Q ss_pred HHHH---HHHHHH-HcCCCH------HHHHHHHhceEEEccC--cEEEecCCcceE
Q 012357 192 LVKR---VFRDIQ-RVGQEP------EEIIHQISETVYPMYK--AFIEPDLQTAHI 235 (465)
Q Consensus 192 l~rr---Ilrdl~-e~G~TI------~~vi~~i~d~V~~m~~--G~I~~~g~~aDI 235 (465)
.... +++++. +.|.|+ ++.+..+||++++|++ |.+...+...++
T Consensus 436 ~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~ 491 (538)
T 1yqt_A 436 QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGM 491 (538)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHH
Confidence 7554 456665 358888 7889999999999985 556555655443
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.83 E-value=8.2e-21 Score=206.74 Aligned_cols=181 Identities=13% Similarity=0.111 Sum_probs=131.8
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~ 118 (465)
.+++++.|+.. .+++++|++.+|+ ++||+||||||||||+++|+|++ |++|.|.+ ...++|+||++...
T Consensus 360 ~~~l~~~~~~~-~l~~~~~~v~~Ge---i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------~~~i~~v~Q~~~~~ 429 (607)
T 3bk7_A 360 YPRLVKDYGSF-KLEVEPGEIRKGE---VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------DLTVAYKPQYIKAE 429 (607)
T ss_dssp ECCEEEECSSC-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------CCCEEEECSSCCCC
T ss_pred EeceEEEecce-EEEecccccCCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEE------eeEEEEEecCccCC
Confidence 35677778764 6899999999999 99999999999999999999999 99999976 34699999998877
Q ss_pred ccchHHHHHHhh-hccccccccc---c-ccccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccH
Q 012357 119 DYDTLLENIRGL-KEGKAVQVPI---Y-DFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (465)
Q Consensus 119 ~~~tv~enL~~l-~~~~~~~~p~---~-d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~ 190 (465)
+..|+.+++... .......... . .+............+ ..|||.||+++ ..+|.++++||||++||+
T Consensus 430 ~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL-----~~~p~lLlLDEPt~~LD~ 504 (607)
T 3bk7_A 430 YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATL-----LRDADIYLLDEPSAYLDV 504 (607)
T ss_dssp CSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHH-----TSCCSEEEEECTTTTCCH
T ss_pred CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH-----HhCCCEEEEeCCccCCCH
Confidence 778998887654 1110000000 0 000001111011122 24999999999 999999999999999999
Q ss_pred HHHH---HHHHHHH-HcCCCH------HHHHHHHhceEEEccC--cEEEecCCcceE
Q 012357 191 DLVK---RVFRDIQ-RVGQEP------EEIIHQISETVYPMYK--AFIEPDLQTAHI 235 (465)
Q Consensus 191 ~l~r---rIlrdl~-e~G~TI------~~vi~~i~d~V~~m~~--G~I~~~g~~aDI 235 (465)
.... ++++++. +.|.|+ .+.+..+||++++|++ |.+...|...++
T Consensus 505 ~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~ 561 (607)
T 3bk7_A 505 EQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGM 561 (607)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHH
Confidence 8755 4456665 358888 7888999999999985 555555655544
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.83 E-value=3.1e-20 Score=199.58 Aligned_cols=170 Identities=11% Similarity=0.125 Sum_probs=126.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~ 118 (465)
.+++++.|+.. .++.+++++++|+ ++||+||||||||||+++|+|++ |++|.|.+++ +.+++++|++...
T Consensus 272 ~~~l~~~~~~~-~l~~~~~~i~~Ge---i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-----~~i~~~~q~~~~~ 342 (538)
T 3ozx_A 272 WTKIIKKLGDF-QLVVDNGEAKEGE---IIGILGPNGIGKTTFARILVGEITADEGSVTPEK-----QILSYKPQRIFPN 342 (538)
T ss_dssp ECCEEEEETTE-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-----CCEEEECSSCCCC
T ss_pred EcceEEEECCE-EEEeccceECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----eeeEeechhcccc
Confidence 35677778764 5788899999999 99999999999999999999999 9999999765 3578999987766
Q ss_pred ccchHHHHHHhhhccccccccccccccccccCc------ccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCcc
Q 012357 119 DYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (465)
Q Consensus 119 ~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD 189 (465)
...++.+|+...................+..+. ....+ ..|||+||+++ ..+|.++++||||++||
T Consensus 343 ~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL-----~~~p~lLlLDEPT~gLD 417 (538)
T 3ozx_A 343 YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATL-----AKEADLYVLDQPSSYLD 417 (538)
T ss_dssp CSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHH-----HSCCSEEEEESTTTTCC
T ss_pred cCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH-----HcCCCEEEEeCCccCCC
Confidence 678999998874321100000000001111111 11122 23999999999 99999999999999999
Q ss_pred HHHHH---HHHHHHHH-cCCCH------HHHHHHHhceEEEccC
Q 012357 190 FDLVK---RVFRDIQR-VGQEP------EEIIHQISETVYPMYK 223 (465)
Q Consensus 190 ~~l~r---rIlrdl~e-~G~TI------~~vi~~i~d~V~~m~~ 223 (465)
+.... ++++++++ .|.|+ ++.+..+||+|++|++
T Consensus 418 ~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 418 VEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 98654 45566654 48886 7889999999999975
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.81 E-value=1.4e-20 Score=202.30 Aligned_cols=178 Identities=12% Similarity=0.161 Sum_probs=122.4
Q ss_pred eeeeeeEeeeCcE-EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEE---------EECCeecC--
Q 012357 38 PIEDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI---------TMDNYNDS-- 104 (465)
Q Consensus 38 ~v~~~ls~~~g~~-~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I---------~lDg~~~~-- 104 (465)
.+.+++++.|+.. .+++++| .+++|+ ++||+||||||||||+++|+|++ |++|.+ .++|....
T Consensus 22 ~~~~~ls~~yg~~~~~l~~vs-~i~~Ge---~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 22 QLEEDCVHRYGVNAFVLYRLP-VVKEGM---VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp --CCCEEEECSTTCCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hHhcCcEEEECCccccccCcC-cCCCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 3456789999875 5999999 999999 99999999999999999999999 998885 34554321
Q ss_pred -------ccccccccCCCCCCcc---chHHHHHHhhhccccccccccccccccccCcccccc---ccchhhhhHhHHhhh
Q 012357 105 -------SRIIDGNFDDPRLTDY---DTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEV---PSSRIVIIEGIYALS 171 (465)
Q Consensus 105 -------~~~ig~vfQ~p~l~~~---~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~ 171 (465)
+..+++++|+...++. .++.+++........+..-...+............+ ..|||.||+++
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL---- 173 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAAL---- 173 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHH----
Confidence 1246677776544332 367777653211000000000000000000011112 24999999999
Q ss_pred hccCcceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCc
Q 012357 172 EKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 172 d~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G 224 (465)
..+|.++++||||++||+.... ++++++.++|.|+ ++.+..+||++++|+++
T Consensus 174 -~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 174 -LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp -HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred -hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 8999999999999999998654 4556776678888 78899999999999754
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.80 E-value=9.5e-20 Score=198.29 Aligned_cols=180 Identities=10% Similarity=0.031 Sum_probs=131.3
Q ss_pred eeeEeeeCc-EEEEeeeeeEEecC-----ccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccC
Q 012357 41 DTLSFEKGF-FIVIRACQLLAQKN-----HGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFD 113 (465)
Q Consensus 41 ~~ls~~~g~-~~aL~~VsL~i~~G-----e~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ 113 (465)
.++++.|+. ..++++++|++.+| + ++||+||||||||||+++|+|++ |++|.. .....++|++|
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GE---iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~~~~i~~~~q 420 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSE---ILVMMGENGTGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQ 420 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTC---EEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CCSCCEEEECS
T ss_pred cceeEEecCcccccCceEEEEecCccccce---EEEEECCCCCcHHHHHHHHhcCCCCCCCcC------ccCCcEEEecc
Confidence 446677754 56899999999998 7 89999999999999999999999 998862 33456899999
Q ss_pred CCCCCccchHHHHHHhhhccccccccccccccccccC------cccccc---ccchhhhhHhHHhhhhccCcceeeeeee
Q 012357 114 DPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIG------YRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (465)
Q Consensus 114 ~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~------~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEp 184 (465)
++......++.+++.....+... .+.......+.++ .....+ ..|||+||+++ ..+|.++++|||
T Consensus 421 ~~~~~~~~tv~e~~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL-----~~~p~lLlLDEP 494 (608)
T 3j16_B 421 KIAPKFPGTVRQLFFKKIRGQFL-NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLAL-----GIPADIYLIDEP 494 (608)
T ss_dssp SCCCCCCSBHHHHHHHHCSSTTT-SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHT-----TSCCSEEEECCT
T ss_pred cccccCCccHHHHHHHHhhcccc-cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH-----HhCCCEEEEECC
Confidence 98766667898887542221110 0000000011111 011122 23999999999 999999999999
Q ss_pred ecCccHHHHH---HHHHHHH-HcCCCH------HHHHHHHhceEEEccC--cEEEecCCcceE
Q 012357 185 TGGVHFDLVK---RVFRDIQ-RVGQEP------EEIIHQISETVYPMYK--AFIEPDLQTAHI 235 (465)
Q Consensus 185 ts~LD~~l~r---rIlrdl~-e~G~TI------~~vi~~i~d~V~~m~~--G~I~~~g~~aDI 235 (465)
|++||+.... ++++++. +.|.|+ ++.+..+||++++|++ |.+...|.+.++
T Consensus 495 T~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 495 SAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence 9999998654 4556665 458888 7889999999999986 788888877666
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.79 E-value=4.4e-20 Score=201.00 Aligned_cols=175 Identities=13% Similarity=0.162 Sum_probs=121.6
Q ss_pred eeeEeeeCcE-EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEE---------EECCeecC-----
Q 012357 41 DTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI---------TMDNYNDS----- 104 (465)
Q Consensus 41 ~~ls~~~g~~-~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I---------~lDg~~~~----- 104 (465)
+++++.||.. .+++++| .+++|+ ++||+||||||||||+++|+|++ |++|.+ .++|....
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge---~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~ 170 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGM---VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER 170 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCC---EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhh
Confidence 6789999875 5999999 999999 99999999999999999999999 999985 34554321
Q ss_pred ----ccccccccCCCCCCc---cchHHHHHHhhhccccccccccccccccccCcccccc---ccchhhhhHhHHhhhhcc
Q 012357 105 ----SRIIDGNFDDPRLTD---YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKL 174 (465)
Q Consensus 105 ----~~~ig~vfQ~p~l~~---~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~ 174 (465)
+..+++++|+...++ ..++.+++........+..-...+............+ ..|||.||+++ ..
T Consensus 171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL-----~~ 245 (607)
T 3bk7_A 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAAL-----LR 245 (607)
T ss_dssp HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHH-----HS
T ss_pred hhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHH-----hc
Confidence 123566777643322 1378888754211000000000000000001011112 24999999999 89
Q ss_pred CcceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCc
Q 012357 175 RPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 175 ~p~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G 224 (465)
+|.++++||||++||+.... ++++++.++|.|+ ++.+..+||++++|+++
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999998644 5567776678888 77889999999999754
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.79 E-value=4.1e-19 Score=201.11 Aligned_cols=177 Identities=14% Similarity=0.135 Sum_probs=131.5
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-ccccccccCCC-CC
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-SRIIDGNFDDP-RL 117 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~-~~~ig~vfQ~p-~l 117 (465)
..++++.||...+|+++||++++|+ ++||+||||||||||+++|+| |.| +|++.. ...++|++|++ .+
T Consensus 438 ~~~ls~~yg~~~iL~~vsl~I~~Ge---~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~~~~~~~~v~q~~~~~ 507 (986)
T 2iw3_A 438 NCEFSLAYGAKILLNKTQLRLKRAR---RYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQEECRTVYVEHDIDGT 507 (986)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCTTTSCEEETTCCCCCC
T ss_pred EeeEEEEECCEEeEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhC-----CCc--CCCccccceeEEEEccccccc
Confidence 3479999999999999999999999 999999999999999999995 322 444322 22467888875 56
Q ss_pred CccchHHHHHHhhhccccccccccccccccccCc-------ccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecC
Q 012357 118 TDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY-------RTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGG 187 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~-------~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~ 187 (465)
++..|+.+++.....+ ..... ....+..+. ....+ ..||+.|++++ ..+|.++++||||++
T Consensus 508 ~~~ltv~e~l~~~~~~--~~~~v--~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL-----~~~P~lLLLDEPTs~ 578 (986)
T 2iw3_A 508 HSDTSVLDFVFESGVG--TKEAI--KDKLIEFGFTDEMIAMPISALSGGWKMKLALARAV-----LRNADILLLDEPTNH 578 (986)
T ss_dssp CTTSBHHHHHHTTCSS--CHHHH--HHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHH-----HTTCSEEEEESTTTT
T ss_pred ccCCcHHHHHHHhhcC--HHHHH--HHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHH-----hcCCCEEEEECCccC
Confidence 7788999999751111 00000 000111111 01112 24999999999 889999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEE-ecCCcceE
Q 012357 188 VHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIE-PDLQTAHI 235 (465)
Q Consensus 188 LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~-~~g~~aDI 235 (465)
||+.....+.+-+.+.|.|+ ++.+..+||++++|.+|+++ ..|+..++
T Consensus 579 LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 579 LDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp CCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred CCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 99998888777776678888 78899999999999999986 56776654
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.78 E-value=4.8e-20 Score=208.68 Aligned_cols=180 Identities=16% Similarity=0.148 Sum_probs=127.9
Q ss_pred eeeeEeeeCc--EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCC
Q 012357 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (465)
Q Consensus 40 ~~~ls~~~g~--~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~ 116 (465)
.+++++.|++ ..+|+++||++.+|+ ++||+||||||||||+++|+|++ |++|.|.+++. ..++|++|++.
T Consensus 674 v~nLs~~Y~g~~~~iL~dVSl~I~~Ge---ivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~----~~I~yv~Q~~~ 746 (986)
T 2iw3_A 674 VTNMEFQYPGTSKPQITDINFQCSLSS---RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN----CRIAYIKQHAF 746 (986)
T ss_dssp EEEEEECCTTCSSCSEEEEEEEEETTC---EEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT----CCEEEECHHHH
T ss_pred EEeeEEEeCCCCceeeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc----cceEeeccchh
Confidence 4678999964 679999999999999 99999999999999999999999 99999999862 24777777642
Q ss_pred C----CccchHHHHHHhhh-ccccc-------------------------------------------------------
Q 012357 117 L----TDYDTLLENIRGLK-EGKAV------------------------------------------------------- 136 (465)
Q Consensus 117 l----~~~~tv~enL~~l~-~~~~~------------------------------------------------------- 136 (465)
. ....|+.+++.... .+...
T Consensus 747 ~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~EN 826 (986)
T 2iw3_A 747 AHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGEN 826 (986)
T ss_dssp HHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred hhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhh
Confidence 1 11235555554311 00000
Q ss_pred -----------------ccccc-------------c------------------cccccccCcc--------cccc---c
Q 012357 137 -----------------QVPIY-------------D------------------FKSSSRIGYR--------TLEV---P 157 (465)
Q Consensus 137 -----------------~~p~~-------------d------------------~~~~~~~~~~--------~~~l---~ 157 (465)
..+.. + ....+..+.. ...+ .
T Consensus 827 i~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQ 906 (986)
T 2iw3_A 827 IGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906 (986)
T ss_dssp TTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHH
T ss_pred hhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHH
Confidence 00000 0 0000001110 0112 2
Q ss_pred cchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEEecCC
Q 012357 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~~~g~ 231 (465)
.|||.|++++ ..+|.++++||||++||+.....+.+.+.+.|.|+ .+.+..+||++++|.+|++...|.
T Consensus 907 kQRVaLArAL-----~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 907 KVKLVLAAGT-----WQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHHHHHH-----TTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHHHHH-----HhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 3999999999 89999999999999999999888888887767777 788889999999999999877654
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.78 E-value=7.5e-20 Score=201.18 Aligned_cols=178 Identities=12% Similarity=0.121 Sum_probs=108.9
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHH---------------------HHHHhcC-CC-------eeEEEEC
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT---------------------EKVLNFM-PS-------IAVITMD 99 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~---------------------r~L~gll-P~-------sG~I~lD 99 (465)
..++|++|||++++|+ ++||+||||||||||+ +++.++. |+ .+.|.++
T Consensus 30 ~~~~L~~vsl~i~~Ge---~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~ 106 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGK---LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISID 106 (670)
T ss_dssp CSTTCCSEEEEEETTS---EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEES
T ss_pred CccceeccEEEECCCC---EEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEec
Confidence 3468999999999999 9999999999999998 8888887 77 4566666
Q ss_pred CeecC---ccccccccCCCCCC-------------------ccchHHHHHHhhhccc--ccccccccc---------ccc
Q 012357 100 NYNDS---SRIIDGNFDDPRLT-------------------DYDTLLENIRGLKEGK--AVQVPIYDF---------KSS 146 (465)
Q Consensus 100 g~~~~---~~~ig~vfQ~p~l~-------------------~~~tv~enL~~l~~~~--~~~~p~~d~---------~~~ 146 (465)
+.... ++.+++++|.+.++ ..+++.+|+.+..... ......... ...
T Consensus 107 ~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 107 QKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp SCC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred CchhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 65432 35678888765442 3457788876632100 000000000 001
Q ss_pred cccCc-------ccccc---ccchhhhhHhHHhhhhccCcc--eeeeeeeecCccHHHH---HHHHHHHHHcCCCH----
Q 012357 147 SRIGY-------RTLEV---PSSRIVIIEGIYALSEKLRPL--IDLRVSVTGGVHFDLV---KRVFRDIQRVGQEP---- 207 (465)
Q Consensus 147 ~~~~~-------~~~~l---~~qRVlIaegl~aL~d~~~p~--LdllDEpts~LD~~l~---rrIlrdl~e~G~TI---- 207 (465)
+.++. ....+ ..|||.||+++ ..+|. ++++||||++||+... .+++++++++|.|+
T Consensus 187 ~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL-----~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 187 QNVGLDYLTLSRSAGTLSGGEAQRIRLATQI-----GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHTTCTTCCTTCBGGGSCHHHHHHHHHHHHH-----HTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHcCCchhhhcCCcccCCHHHHHHHHHHHHH-----hhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 11111 11112 24999999999 77776 9999999999999854 45567777779888
Q ss_pred --HHHHHHHhceEEEc------cCcEEEecCCcceE
Q 012357 208 --EEIIHQISETVYPM------YKAFIEPDLQTAHI 235 (465)
Q Consensus 208 --~~vi~~i~d~V~~m------~~G~I~~~g~~aDI 235 (465)
++.+. .||++++| ++|+++..|+..++
T Consensus 262 Hd~~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 262 HDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp CCHHHHH-HCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred CCHHHHh-hCCEEEEecccccccCCEEEEecCHHHH
Confidence 66655 59999999 89999999888776
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.70 E-value=4.4e-18 Score=187.13 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=60.5
Q ss_pred cchhhhhHhHHhhhhccC---cceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEc----
Q 012357 158 SSRIVIIEGIYALSEKLR---PLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPM---- 221 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~---p~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m---- 221 (465)
.|||.||+++ ..+ |.++++||||++||+.... +++++++++|.|+ ++.+ .+||++++|
T Consensus 549 ~qrv~iAraL-----~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~i~~l~~~~ 622 (670)
T 3ux8_A 549 AQRVKLAAEL-----HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEG 622 (670)
T ss_dssp HHHHHHHHHH-----HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSS
T ss_pred HHHHHHHHHH-----hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HhCCEEEEecCCc
Confidence 4999999999 554 4699999999999998654 4557777779888 6666 569999999
Q ss_pred --cCcEEEecCCcceE
Q 012357 222 --YKAFIEPDLQTAHI 235 (465)
Q Consensus 222 --~~G~I~~~g~~aDI 235 (465)
++|+|+.+|+.+++
T Consensus 623 g~~~G~i~~~g~~~~~ 638 (670)
T 3ux8_A 623 GDRGGQIVAVGTPEEV 638 (670)
T ss_dssp GGGCCEEEEEECHHHH
T ss_pred CCCCCEEEEecCHHHH
Confidence 89999999998887
No 58
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.69 E-value=2e-19 Score=181.56 Aligned_cols=204 Identities=18% Similarity=0.199 Sum_probs=157.4
Q ss_pred eeeeeeEeeeCcEEEEeeeeeEEecC---ccceEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecCccc-
Q 012357 38 PIEDTLSFEKGFFIVIRACQLLAQKN---HGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDSSRI- 107 (465)
Q Consensus 38 ~v~~~ls~~~g~~~aL~~VsL~i~~G---e~~~IigIiGpSGSGKSTL~r~L~gll-P-----~sG~I~lDg~~~~~~~- 107 (465)
|+.+.+++.|+...++++++..+.++ .+|+++||+||||||||||+++|++++ + ..+.|.+||++.....
T Consensus 61 pl~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l 140 (321)
T 3tqc_A 61 PLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKL 140 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHH
T ss_pred HHHHHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhh
Confidence 67777788888888888888777654 358999999999999999999999987 2 3567999998764321
Q ss_pred ----cccccCCCCCCccchHHHHHHhhhccc-cccccccccccccccCccccccccchhhhhHhHHhhhhc---------
Q 012357 108 ----IDGNFDDPRLTDYDTLLENIRGLKEGK-AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK--------- 173 (465)
Q Consensus 108 ----ig~vfQ~p~l~~~~tv~enL~~l~~~~-~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~--------- 173 (465)
....+++|..++...+.+.+..+..+. .+..|.|++..+.+...........+++|+||++++.+.
T Consensus 141 ~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~ 220 (321)
T 3tqc_A 141 EKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQ 220 (321)
T ss_dssp HHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCC
T ss_pred hhHHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchh
Confidence 112355677888888888888888887 788999999988877545555677899999999999865
Q ss_pred --cCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH--------------HHHHHHHhce-----EEEccCcEEEecCCc
Q 012357 174 --LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP--------------EEIIHQISET-----VYPMYKAFIEPDLQT 232 (465)
Q Consensus 174 --~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI--------------~~vi~~i~d~-----V~~m~~G~I~~~g~~ 232 (465)
..+.+|+..+++++.|.+..|.+.|+...+|... .+.+..+++. ..+....+|.|++..
T Consensus 221 ~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~ 300 (321)
T 3tqc_A 221 VFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNR 300 (321)
T ss_dssp CCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGG
T ss_pred hhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccC
Confidence 7788999999999999999999999988765210 2222223333 346667789999999
Q ss_pred ceEEeeCCC
Q 012357 233 AHIKIINKF 241 (465)
Q Consensus 233 aDIiI~~~~ 241 (465)
||+|++.+.
T Consensus 301 Adlil~~g~ 309 (321)
T 3tqc_A 301 AQLILEKAA 309 (321)
T ss_dssp CSEEEEECT
T ss_pred ceEEEecCC
Confidence 999997544
No 59
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.7e-19 Score=187.02 Aligned_cols=166 Identities=10% Similarity=0.039 Sum_probs=117.3
Q ss_pred eeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCee-E-EEECCeecCccccccccCCCCC---CccchHHHHHH
Q 012357 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-V-ITMDNYNDSSRIIDGNFDDPRL---TDYDTLLENIR 128 (465)
Q Consensus 55 ~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG-~-I~lDg~~~~~~~ig~vfQ~p~l---~~~~tv~enL~ 128 (465)
+++|.+++|+ +++|+||||||||||+|+|+|+. |++| . |.+||. .++.++++||++.+ ....++.+|+
T Consensus 130 ~vsl~i~~Ge---~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~--~~~~i~~vpq~~~l~~~~~~~tv~eni- 203 (460)
T 2npi_A 130 KIRMSNFEGP---RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD--PQQPIFTVPGCISATPISDILDAQLPT- 203 (460)
T ss_dssp HHHHHSSSCC---CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC--TTSCSSSCSSCCEEEECCSCCCTTCTT-
T ss_pred cCceEeCCCC---EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC--ccCCeeeeccchhhcccccccchhhhh-
Confidence 6899999999 99999999999999999999999 9999 8 999983 36679999999854 3345777777
Q ss_pred hhhcc-ccccccccccccccccCccc----ccc---ccchhhhhHh--HHhhhhccCcce----eeeee-eecCccHHHH
Q 012357 129 GLKEG-KAVQVPIYDFKSSSRIGYRT----LEV---PSSRIVIIEG--IYALSEKLRPLI----DLRVS-VTGGVHFDLV 193 (465)
Q Consensus 129 ~l~~~-~~~~~p~~d~~~~~~~~~~~----~~l---~~qRVlIaeg--l~aL~d~~~p~L----dllDE-pts~LD~~l~ 193 (465)
+.... ................+... ..+ ..||+.++++ + ..+|.+ +++|| |++++|+.
T Consensus 204 ~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL-----~~~p~i~~sGLlLDEpPts~LD~~-- 276 (460)
T 2npi_A 204 WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRL-----HLDPQVRRSGCIVDTPSISQLDEN-- 276 (460)
T ss_dssp CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHH-----HHCHHHHHSCEEEECCCGGGSCSS--
T ss_pred cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHh-----ccCcccCcceEEEeCCcccccChh--
Confidence 43211 00000000001111111111 111 2499999999 8 889999 99999 99999998
Q ss_pred HHHHHHH-HHcCCCH------HH------HHHHHhce-----EEEcc-CcEEEecCCcce
Q 012357 194 KRVFRDI-QRVGQEP------EE------IIHQISET-----VYPMY-KAFIEPDLQTAH 234 (465)
Q Consensus 194 rrIlrdl-~e~G~TI------~~------vi~~i~d~-----V~~m~-~G~I~~~g~~aD 234 (465)
++.++++ .+.|.|+ .. .+..+||+ +++|. +|.++ .++..+
T Consensus 277 ~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~ 335 (460)
T 2npi_A 277 LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVY 335 (460)
T ss_dssp CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHH
T ss_pred HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHH
Confidence 4444444 3447665 23 67789999 99998 89887 666543
No 60
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.67 E-value=6e-18 Score=169.32 Aligned_cols=177 Identities=15% Similarity=0.189 Sum_probs=133.6
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcC---CCeeEEEE---CCeecC---ccccccccCCCCCCccchHHHHHHhhh
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITM---DNYNDS---SRIIDGNFDDPRLTDYDTLLENIRGLK 131 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---P~sG~I~l---Dg~~~~---~~~ig~vfQ~p~l~~~~tv~enL~~l~ 131 (465)
.+|+ ++||+||||||||||+++|+|++ |++|.|.+ ||++.. ++.++++ |++.+++..++.+++..+.
T Consensus 78 ~~g~---iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~ 153 (308)
T 1sq5_A 78 RIPY---IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVS 153 (308)
T ss_dssp CCCE---EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHH
T ss_pred CCCE---EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHH
Confidence 6777 99999999999999999999975 67888888 998753 2347788 8888778888988887753
Q ss_pred ---cccc-ccccccccccccccCccccccccchhhhhHhHHhhhh-----------ccCcceeeeeeeecCccHHHHHHH
Q 012357 132 ---EGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----------KLRPLIDLRVSVTGGVHFDLVKRV 196 (465)
Q Consensus 132 ---~~~~-~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d-----------~~~p~LdllDEpts~LD~~l~rrI 196 (465)
.+.. +..|.+++..+.+............++|+||.+++.+ ...+.+|..++++++.|.+..|.+
T Consensus 154 ~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~ 233 (308)
T 1sq5_A 154 DLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYI 233 (308)
T ss_dssp HHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHH
T ss_pred HHhCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHH
Confidence 3343 6678888887766553333344568999999998876 567789999999998888777766
Q ss_pred HHHHHH---------------cCCCHHH----HHHHHhceEEEccCcEEEecCCcceEEeeCCC
Q 012357 197 FRDIQR---------------VGQEPEE----IIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (465)
Q Consensus 197 lrdl~e---------------~G~TI~~----vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~ 241 (465)
.|+... +|.|..+ +..+|.+.+.+++..+|.|....||++|+++.
T Consensus 234 ~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~ 297 (308)
T 1sq5_A 234 NRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSA 297 (308)
T ss_dssp HHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECG
T ss_pred HHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCC
Confidence 676532 3777644 33445555677777788899999999997654
No 61
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2e-17 Score=180.02 Aligned_cols=175 Identities=10% Similarity=0.043 Sum_probs=108.2
Q ss_pred eeeEeeeCcE-EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEE-----------ECCeecC---
Q 012357 41 DTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-----------MDNYNDS--- 104 (465)
Q Consensus 41 ~~ls~~~g~~-~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~-----------lDg~~~~--- 104 (465)
+++++.|+.. ..+++++ .+++|+ ++||+||||||||||+++|+|++ |++|.|. +.|....
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Ge---i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~ 156 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQ---VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYF 156 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCCCC---EEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhh
Confidence 4678888753 4677776 589999 99999999999999999999999 9999872 2222110
Q ss_pred ----ccccc--cccCCCCCC------ccchHHHHHHhhhccc--cccccccccccccccCcccccc---ccchhhhhHhH
Q 012357 105 ----SRIID--GNFDDPRLT------DYDTLLENIRGLKEGK--AVQVPIYDFKSSSRIGYRTLEV---PSSRIVIIEGI 167 (465)
Q Consensus 105 ----~~~ig--~vfQ~p~l~------~~~tv~enL~~l~~~~--~~~~p~~d~~~~~~~~~~~~~l---~~qRVlIaegl 167 (465)
...+. +.+|....+ ...++.+++....... ....-...+............+ ..|||.||+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL 236 (608)
T 3j16_B 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSC 236 (608)
T ss_dssp HHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHH
Confidence 00111 111211110 1123333332211000 0000000000000000011112 24999999999
Q ss_pred HhhhhccCcceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCc
Q 012357 168 YALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 168 ~aL~d~~~p~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m~~G 224 (465)
..+|.++++||||++||+.... +++++++++|.|+ ++.+..+||++.+|+++
T Consensus 237 -----~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~ 297 (608)
T 3j16_B 237 -----VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297 (608)
T ss_dssp -----HSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred -----HhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 8999999999999999998654 4556666668888 78899999999999865
No 62
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.64 E-value=6.9e-17 Score=173.58 Aligned_cols=154 Identities=10% Similarity=0.085 Sum_probs=98.7
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEE-----------EECCeecC---------cc----ccccccCCC
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI-----------TMDNYNDS---------SR----IIDGNFDDP 115 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I-----------~lDg~~~~---------~~----~ig~vfQ~p 115 (465)
++|+ ++||+||||||||||+++|+|++ |++|.| .++|..+. .. .+.++.+.+
T Consensus 23 ~~Ge---i~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 23 KNNT---ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CTTE---EEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 5799 99999999999999999999999 999988 45554331 01 122333333
Q ss_pred CCCccchHHHHHHhhhccccccccccccccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHH
Q 012357 116 RLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (465)
Q Consensus 116 ~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l 192 (465)
.++. .++.+++...........-...+............+ ..|||.||+++ ..+|.++++||||++||+..
T Consensus 100 ~~~~-~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL-----~~~p~illlDEPts~LD~~~ 173 (538)
T 3ozx_A 100 KFLK-GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASL-----LREADVYIFDQPSSYLDVRE 173 (538)
T ss_dssp TTCC-SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHH-----HSCCSEEEEESTTTTCCHHH
T ss_pred hhcc-CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-----HcCCCEEEEECCcccCCHHH
Confidence 3222 356665543211110000000000000001011112 24999999999 89999999999999999987
Q ss_pred HHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCc
Q 012357 193 VKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKA 224 (465)
Q Consensus 193 ~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G 224 (465)
..+ +++++.+ |.|+ ++.+..+||++.+++++
T Consensus 174 ~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 174 RMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp HHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 554 4455544 8888 78899999999999764
No 63
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.61 E-value=1.1e-16 Score=150.45 Aligned_cols=172 Identities=20% Similarity=0.265 Sum_probs=126.2
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcC-C---CeeEEEECCeecCcc---ccccc--cCCCCCCccchHHHHHHhhh
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYNDSSR---IIDGN--FDDPRLTDYDTLLENIRGLK 131 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P---~sG~I~lDg~~~~~~---~ig~v--fQ~p~l~~~~tv~enL~~l~ 131 (465)
++|+ ++||+||||||||||+++|+|++ | ..|.|.+||++.... .++.. ...+..++...+.+.+..+.
T Consensus 20 ~~g~---~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 96 (208)
T 3c8u_A 20 PGRQ---LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALK 96 (208)
T ss_dssp CSCE---EEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCe---EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHh
Confidence 5688 99999999999999999999999 5 489999999876521 12211 12233344444555666666
Q ss_pred ccccccccccccccccccCccccccccc-hhhhhHhHHhhhhc-----cCcceeeeeeeecCccHHHHHHHHHHHHHcCC
Q 012357 132 EGKAVQVPIYDFKSSSRIGYRTLEVPSS-RIVIIEGIYALSEK-----LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (465)
Q Consensus 132 ~~~~~~~p~~d~~~~~~~~~~~~~l~~q-RVlIaegl~aL~d~-----~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~ 205 (465)
.+..+..|.+++......+ +.+.+... +++|++|.++++|+ +.+.+|...+.+++.+.+. +|++++..++|.
T Consensus 97 ~~~~i~~p~~d~~~~~~~g-~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~-~R~~~R~~~~g~ 174 (208)
T 3c8u_A 97 HQERVIYPLFDRARDIAIA-GAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLE-ARLVQRWLDHGL 174 (208)
T ss_dssp HCSCEEEEEEETTTTEEEE-EEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHH-HHHHHHHHHTTC
T ss_pred cCCceecccCCccccCCCC-CceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHH-HHHHHHHHhcCC
Confidence 6666777888777655433 34445554 88999999887653 4678899999998877655 455555567799
Q ss_pred CHHHHHHHHhceEEEccCcEEEecCCcceEEee
Q 012357 206 EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (465)
Q Consensus 206 TI~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~ 238 (465)
|..++.+++..+..+++ .++.|....||++|+
T Consensus 175 t~~~~~~~~~~~~~~~~-~~i~~~~~~aD~vi~ 206 (208)
T 3c8u_A 175 NHDAAVARAQGNDLANA-RAIEAARLPADLTWP 206 (208)
T ss_dssp CHHHHHHHHHTHHHHHH-HHHHTTBCCCSEEEC
T ss_pred CHHHHHHHHHhccHHHH-HHHHhCCCCCCEEee
Confidence 99999999987778877 789999999999985
No 64
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.58 E-value=4.1e-16 Score=156.04 Aligned_cols=161 Identities=14% Similarity=0.034 Sum_probs=113.8
Q ss_pred EeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc-------------cccccccCCCC-C
Q 012357 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------------RIIDGNFDDPR-L 117 (465)
Q Consensus 53 L~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~-------------~~ig~vfQ~p~-l 117 (465)
+..++|.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.+..+ ..+++++|++. +
T Consensus 90 ~~~l~~~~~~g~---vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPA---VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCc---EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 456888889999 99999999999999999999999 899999999976532 24789999998 8
Q ss_pred CccchHHHHHHhhhccccccccccccc-cccccCccccccccchhhhhHhHHhhhhccCcc--eeeeeeeecCccHHHHH
Q 012357 118 TDYDTLLENIRGLKEGKAVQVPIYDFK-SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL--IDLRVSVTGGVHFDLVK 194 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~~~~~~p~~d~~-~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~--LdllDEpts~LD~~l~r 194 (465)
++..++.+++........ .....+.. ...........++.||+.|++++ ..+|. ++++| ||+++|+...
T Consensus 167 ~~~~~v~e~l~~~~~~~~-d~~lldt~gl~~~~~~~~~eLSkqr~~iaral-----~~~P~e~lLvLD-ptsglD~~~~- 238 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEGY-DVVLCDTSGRLHTNYSLMEELIACKKAVGKIV-----SGAPNEILLVLD-GNTGLNMLPQ- 238 (302)
T ss_dssp CHHHHHHHHHHHHHHTTC-SEEEECCCCCSSCCHHHHHHHHHHHHHHHTTS-----TTCCSEEEEEEE-GGGGGGGHHH-
T ss_pred CHHHHHHHHHHHHHHcCC-cchHHhcCCCCcchhHHHHHHHHHHHHHHHhh-----ccCCCeeEEEEe-CCCCcCHHHH-
Confidence 888999999987532111 11111100 00000001112346899999999 88899 99999 9999998743
Q ss_pred HHHHHHHH-cCCCH---------------HHHHHHHhceEEEccCcEE
Q 012357 195 RVFRDIQR-VGQEP---------------EEIIHQISETVYPMYKAFI 226 (465)
Q Consensus 195 rIlrdl~e-~G~TI---------------~~vi~~i~d~V~~m~~G~I 226 (465)
++.+++ .|.|+ ..++..+...+..+..|..
T Consensus 239 --~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 239 --AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp --HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred --HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 244443 36554 5667777778888877743
No 65
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.55 E-value=1.1e-15 Score=143.01 Aligned_cols=177 Identities=31% Similarity=0.518 Sum_probs=115.0
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc------cccccccCCCCCCccchHHHHHHhhhcc
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEG 133 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~------~~ig~vfQ~p~l~~~~tv~enL~~l~~~ 133 (465)
++|+ ++||+||||||||||+++|+|++ |..+.+..|.+.... ....+.++.+..++...+.+.+..+..+
T Consensus 4 ~~~~---~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (211)
T 3asz_A 4 PKPF---VIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRG 80 (211)
T ss_dssp -CCE---EEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTT
T ss_pred CCcE---EEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcC
Confidence 5677 99999999999999999999998 557777777654311 1122334444444444555555554444
Q ss_pred ccccccccccccccccCccccccccchhhhhHhHHhhhhc-cCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHHHH
Q 012357 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (465)
Q Consensus 134 ~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~-~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~vi~ 212 (465)
.....|.+++..+.+.. +...+...++++.++.+++.|+ ....+|...+.+...+.+..+.+.|+..++|.|+..+.+
T Consensus 81 ~~~~~~~~~~s~g~~~~-~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 81 LPVEMPVYDFRAYTRSP-RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp CCEEECCEETTTTEECS-SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCcCCCcccCcccCCCC-CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 44445555555444322 2223344566766766665542 333445555555555555556666666778999988889
Q ss_pred HHhceEEEccCcEEEecCCcceEEeeCCC
Q 012357 213 QISETVYPMYKAFIEPDLQTAHIKIINKF 241 (465)
Q Consensus 213 ~i~d~V~~m~~G~I~~~g~~aDIiI~~~~ 241 (465)
++..++.++++.++.+....||+++.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 160 QYLEQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp HHHHTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred HHHHhhhhhHHHhcccchhcCeEEEeCCC
Confidence 88888888888888888899999987644
No 66
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.55 E-value=4.6e-15 Score=167.59 Aligned_cols=73 Identities=16% Similarity=0.314 Sum_probs=61.3
Q ss_pred cchhhhhHhHHhhhhccC---cceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEc----
Q 012357 158 SSRIVIIEGIYALSEKLR---PLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPM---- 221 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~---p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m---- 221 (465)
.|||.||+++ ..+ |.++++||||++||+.....+ ++++.++|.|+ ++++.. ||+|++|
T Consensus 811 rQRV~LAraL-----~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~g 884 (916)
T 3pih_A 811 AQRIKLASEL-----RKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEG 884 (916)
T ss_dssp HHHHHHHHHH-----TSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSS
T ss_pred HHHHHHHHHH-----hhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCC
Confidence 3999999999 544 579999999999999876554 46666779988 777755 9999999
Q ss_pred --cCcEEEecCCcceEE
Q 012357 222 --YKAFIEPDLQTAHIK 236 (465)
Q Consensus 222 --~~G~I~~~g~~aDIi 236 (465)
.+|+|+.+|.+.++.
T Consensus 885 g~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 885 GKEGGYIVATGTPEEIA 901 (916)
T ss_dssp GGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEEcCHHHHH
Confidence 999999999998874
No 67
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.54 E-value=9.1e-16 Score=147.88 Aligned_cols=182 Identities=28% Similarity=0.448 Sum_probs=101.6
Q ss_pred eeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCccccccccCCCCCCccchHHH
Q 012357 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLE 125 (465)
Q Consensus 46 ~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~e 125 (465)
+-|.+.+|+++||++++|. ++||+||||||||||+++|++++ |.+.++ ..++.+++++|+. ++...++.+
T Consensus 8 ~~~~~~~l~~isl~i~~g~---iigI~G~~GsGKSTl~k~L~~~l---G~~~~~---~~~~~i~~v~~d~-~~~~l~~~~ 77 (245)
T 2jeo_A 8 SSGVDLGTENLYFQSMRPF---LIGVSGGTASGKSTVCEKIMELL---GQNEVE---QRQRKVVILSQDR-FYKVLTAEQ 77 (245)
T ss_dssp ---------------CCSE---EEEEECSTTSSHHHHHHHHHHHH---TGGGSC---GGGCSEEEEEGGG-GBCCCCHHH
T ss_pred cCCCceeecceeccCCCCE---EEEEECCCCCCHHHHHHHHHHHh---chhccc---ccCCceEEEeCCc-CccccCHhH
Confidence 3456789999999999999 99999999999999999999976 222222 1133455555552 333445555
Q ss_pred HHHhhh------------------------ccccccccccccccccccCccccccccchhhhhHhHHhhh-hccCcceee
Q 012357 126 NIRGLK------------------------EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDL 180 (465)
Q Consensus 126 nL~~l~------------------------~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~-d~~~p~Ldl 180 (465)
++.... .......+.++.....++.. .......+++|++++..+. ..+....+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~~~~~ 156 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIRDMFHL 156 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHHTTCSE
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHHHHhcCe
Confidence 443321 11111112222222222221 1112335677777766553 333344577
Q ss_pred eeeeecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEEecCCcceEEeeC
Q 012357 181 RVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (465)
Q Consensus 181 lDEpts~LD~~l~rrIlrdl~e~G~TI~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~~ 239 (465)
....++..+.+..+++.+++ ++|.+..++..+|..++.+.++.++.|....||++|++
T Consensus 157 ~i~v~th~~~~~~r~~~r~~-~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~ 214 (245)
T 2jeo_A 157 RLFVDTDSDVRLSRRVLRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPR 214 (245)
T ss_dssp EEEEECCHHHHHHHHHHHHT-C---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEES
T ss_pred EEEEECCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcC
Confidence 77788776666666666766 56999999988888887777777788889999999854
No 68
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.53 E-value=2.5e-15 Score=153.79 Aligned_cols=159 Identities=14% Similarity=0.044 Sum_probs=114.3
Q ss_pred eeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc-------------cccccccCCCC-CC
Q 012357 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------------RIIDGNFDDPR-LT 118 (465)
Q Consensus 54 ~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~-------------~~ig~vfQ~p~-l~ 118 (465)
..++|.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.+..+ ..+++++|++. ++
T Consensus 148 ~~l~l~~~~g~---vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPA---VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCe---EEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46788889999 99999999999999999999999 889999999987532 24789999998 88
Q ss_pred ccchHHHHHHhhhccccccccccccc-cccccCccccccccchhhhhHhHHhhhhccCcc--eeeeeeeecCccHHHHHH
Q 012357 119 DYDTLLENIRGLKEGKAVQVPIYDFK-SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL--IDLRVSVTGGVHFDLVKR 195 (465)
Q Consensus 119 ~~~tv~enL~~l~~~~~~~~p~~d~~-~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~--LdllDEpts~LD~~l~rr 195 (465)
+..++.+++.+...... .....+.. ...........++.||+.|++++ ...|. ++++| ||+++|+....
T Consensus 225 p~~tv~e~l~~~~~~~~-d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral-----~~~P~e~lLvLD-pttglD~~~~~- 296 (359)
T 2og2_A 225 AATVLSKAVKRGKEEGY-DVVLCDTSGRLHTNYSLMEELIACKKAVGKIV-----SGAPNEILLVLD-GNTGLNMLPQA- 296 (359)
T ss_dssp HHHHHHHHHHHHHHTTC-SEEEEECCCCSSCCHHHHHHHHHHHHHHHHHS-----TTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred hhhhHHHHHHHHHhCCC-HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHH-----hcCCCceEEEEc-CCCCCCHHHHH-
Confidence 88999999987542111 11111100 00000001112346899999999 88899 99999 99999987542
Q ss_pred HHHHHHH-cCCCH---------------HHHHHHHhceEEEccCcE
Q 012357 196 VFRDIQR-VGQEP---------------EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 196 Ilrdl~e-~G~TI---------------~~vi~~i~d~V~~m~~G~ 225 (465)
+.+++ .|.|+ ..++..++..|..+-.|.
T Consensus 297 --~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 297 --REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp --HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred --HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 34443 36554 567777777888777774
No 69
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.53 E-value=5.5e-15 Score=165.69 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=60.6
Q ss_pred cchhhhhHhHHhhhhccC---cceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEc----
Q 012357 158 SSRIVIIEGIYALSEKLR---PLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPM---- 221 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~---p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m---- 221 (465)
.|||.||+++ ..+ |.++++||||++||+....+ +++++.++|.|+ ++++ .+||++++|
T Consensus 736 kQRv~LAraL-----~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~ 809 (842)
T 2vf7_A 736 AQRIKLATEL-----RRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGA 809 (842)
T ss_dssp HHHHHHHHTT-----SSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSS
T ss_pred HHHHHHHHHH-----HhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCC
Confidence 4999999999 664 79999999999999986554 456777789888 6777 689999999
Q ss_pred --cCcEEEecCCcceE
Q 012357 222 --YKAFIEPDLQTAHI 235 (465)
Q Consensus 222 --~~G~I~~~g~~aDI 235 (465)
++|+|+..+...++
T Consensus 810 g~~~G~Iv~~g~~~el 825 (842)
T 2vf7_A 810 GEDGGRLVAQGTPAEV 825 (842)
T ss_dssp GGGCCSEEEEECHHHH
T ss_pred CCCCCEEEEEcCHHHH
Confidence 79999988887776
No 70
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.52 E-value=7e-15 Score=165.80 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=59.5
Q ss_pred cchhhhhHhHHhhhhccC---cceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEc----
Q 012357 158 SSRIVIIEGIYALSEKLR---PLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPM---- 221 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~---p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m---- 221 (465)
.|||.||+++ ..+ |.++++||||++||+..... +++++.++|.|+ ++++ .+||++++|
T Consensus 851 kQRv~LAraL-----~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~g 924 (972)
T 2r6f_A 851 AQRVKLAAEL-----HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEG 924 (972)
T ss_dssp HHHHHHHHHH-----SSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSS
T ss_pred HHHHHHHHHH-----hcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEcCCC
Confidence 4999999999 654 59999999999999987554 456667779888 6666 479999999
Q ss_pred --cCcEEEecCCcceE
Q 012357 222 --YKAFIEPDLQTAHI 235 (465)
Q Consensus 222 --~~G~I~~~g~~aDI 235 (465)
++|+++..|...++
T Consensus 925 G~~~G~Iv~~g~~~el 940 (972)
T 2r6f_A 925 GDRGGQIVAVGTPEEV 940 (972)
T ss_dssp TTSCCSEEEEESHHHH
T ss_pred CCCCCEEEEecCHHHH
Confidence 78999988887776
No 71
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.50 E-value=4.3e-15 Score=149.31 Aligned_cols=168 Identities=18% Similarity=0.136 Sum_probs=108.2
Q ss_pred EecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCCccchHHHHH-----------
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENI----------- 127 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL----------- 127 (465)
+++|+ ++||+||||||||||+++|+|++ |..|. +.+++++|++.+++. ++.+|+
T Consensus 87 ~~~g~---ivgI~G~sGsGKSTL~~~L~gll~~~~G~----------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~ 152 (312)
T 3aez_A 87 RPVPF---IIGVAGSVAVGKSTTARVLQALLARWDHH----------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFPES 152 (312)
T ss_dssp SCCCE---EEEEECCTTSCHHHHHHHHHHHHHTSTTC----------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGG
T ss_pred CCCCE---EEEEECCCCchHHHHHHHHHhhccccCCC----------CeEEEEecCccCCcc-cHHHHHHHHHhcCCChH
Confidence 67888 99999999999999999999999 75331 234444444444433 444443
Q ss_pred ----------Hhhhcccc-ccccccccccccccCccccccccchhhhhHhHHhhh----hccCcceeeeeeeecCccHHH
Q 012357 128 ----------RGLKEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDL 192 (465)
Q Consensus 128 ----------~~l~~~~~-~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~----d~~~p~LdllDEpts~LD~~l 192 (465)
..+..+.. ...+.++....+++......+...+++|+++.+++. ..+...+|+.++++++.+...
T Consensus 153 ~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~ 232 (312)
T 3aez_A 153 YNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIE 232 (312)
T ss_dssp BCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHH
Confidence 33322211 223444444444444333334456788888887775 356677788888888776666
Q ss_pred HHHHHHHHHHc---------------CCCHHHHH----HHHhceEEEccCcEEEecCCcceEEeeCCC
Q 012357 193 VKRVFRDIQRV---------------GQEPEEII----HQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (465)
Q Consensus 193 ~rrIlrdl~e~---------------G~TI~~vi----~~i~d~V~~m~~G~I~~~g~~aDIiI~~~~ 241 (465)
.|.+.|.+..+ |.+..++. .+|.+.+.+++..+|.|....||++|+++.
T Consensus 233 ~R~i~R~~~~rd~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~ 300 (312)
T 3aez_A 233 QWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDA 300 (312)
T ss_dssp HHHHHHHHHHTTTGGGSTTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECT
T ss_pred HHHHHHHHHHHhccccCcchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCC
Confidence 66666655432 56664433 445556678888899999999999997653
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.50 E-value=1.4e-14 Score=163.72 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=59.4
Q ss_pred cchhhhhHhHHhhhhccC---cceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEc----
Q 012357 158 SSRIVIIEGIYALSEKLR---PLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPM---- 221 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~---p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m---- 221 (465)
.|||.||+++ ..+ |.++++||||++||+....+ +++++.+.|.|+ ++++ .+||++++|
T Consensus 869 kQRv~LAraL-----~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~g 942 (993)
T 2ygr_A 869 AQRVKLASEL-----QKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWIIDLGPEG 942 (993)
T ss_dssp HHHHHHHHHH-----SSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSS
T ss_pred HHHHHHHHHH-----HhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCc
Confidence 4999999999 654 59999999999999987554 456666779888 6666 579999999
Q ss_pred --cCcEEEecCCcceE
Q 012357 222 --YKAFIEPDLQTAHI 235 (465)
Q Consensus 222 --~~G~I~~~g~~aDI 235 (465)
++|+++..|...++
T Consensus 943 g~~~G~Iv~~G~~~el 958 (993)
T 2ygr_A 943 GAGGGTVVAQGTPEDV 958 (993)
T ss_dssp TTSCSEEEEEECHHHH
T ss_pred CCCCCEEEEecCHHHH
Confidence 78999988887776
No 73
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.50 E-value=1.6e-16 Score=150.84 Aligned_cols=135 Identities=15% Similarity=0.126 Sum_probs=80.8
Q ss_pred eCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCee----cCccccccccCCC--CCCcc
Q 012357 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DSSRIIDGNFDDP--RLTDY 120 (465)
Q Consensus 47 ~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~----~~~~~ig~vfQ~p--~l~~~ 120 (465)
|+...+|++| ++|+ ++||+||||||||||+++|+|+-|++|.|...... ..++.++|+||++ ++..+
T Consensus 10 ~g~~~~l~~i----~~Ge---~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~ 82 (208)
T 3b85_A 10 LGQKHYVDAI----DTNT---IVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPY 82 (208)
T ss_dssp HHHHHHHHHH----HHCS---EEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC------CTT
T ss_pred HhHHHHHHhc----cCCC---EEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHH
Confidence 3445566665 7899 99999999999999999999994467777321111 1245699999986 11011
Q ss_pred c-hHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHH
Q 012357 121 D-TLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRD 199 (465)
Q Consensus 121 ~-tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrd 199 (465)
. .+.+.+. ... .....+ ...+. + ....||+.||+++ ..+|.++++||||++ ....+.+++++
T Consensus 83 ~~~~~~~~~----~~~-~~~~~~-~~l~~-g----lGq~qrv~lAraL-----~~~p~lllLDEPts~-~~~~l~~~l~~ 145 (208)
T 3b85_A 83 LRPLHDALR----DMV-EPEVIP-KLMEA-G----IVEVAPLAYMRGR-----TLNDAFVILDEAQNT-TPAQMKMFLTR 145 (208)
T ss_dssp THHHHHHHT----TTS-CTTHHH-HHHHT-T----SEEEEEGGGGTTC-----CBCSEEEEECSGGGC-CHHHHHHHHTT
T ss_pred HHHHHHHHH----Hhc-cHHHHH-HHHHh-C----CchHHHHHHHHHH-----hcCCCEEEEeCCccc-cHHHHHHHHHH
Confidence 0 1111110 000 000000 00011 1 1445999999999 999999999999999 44455555555
Q ss_pred HHHcCCC
Q 012357 200 IQRVGQE 206 (465)
Q Consensus 200 l~e~G~T 206 (465)
+ ++|.|
T Consensus 146 l-~~g~t 151 (208)
T 3b85_A 146 L-GFGSK 151 (208)
T ss_dssp B-CTTCE
T ss_pred h-cCCCE
Confidence 4 33554
No 74
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.47 E-value=7.3e-14 Score=143.94 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=51.3
Q ss_pred cchhhhhHhHHhhhhccCc--ceeeeeeeecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEc----cC
Q 012357 158 SSRIVIIEGIYALSEKLRP--LIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPM----YK 223 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~p--~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI------~~vi~~i~d~V~~m----~~ 223 (465)
.||+.|+.++ ..+| .++++||||++||+.....+...+.+ +|.|+ .+++ .+||++++| .+
T Consensus 301 ~qrl~lA~~l-----~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 301 LSRVMLAVST-----VLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp HHHHHHHHHH-----HHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred HHHHHHHHHH-----HhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 4899999987 5566 99999999999999987776655543 46776 5655 579999999 88
Q ss_pred cEEEe
Q 012357 224 AFIEP 228 (465)
Q Consensus 224 G~I~~ 228 (465)
|++..
T Consensus 375 G~~~~ 379 (415)
T 4aby_A 375 GRTVS 379 (415)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 87754
No 75
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.46 E-value=2.4e-15 Score=137.41 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=70.7
Q ss_pred eeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCccccccccCCCCCC-ccchHHHHHHhhhcc
Q 012357 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLT-DYDTLLENIRGLKEG 133 (465)
Q Consensus 55 ~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~~~~ig~vfQ~p~l~-~~~tv~enL~~l~~~ 133 (465)
+|||++++|+ +++|+||||||||||++++.+-. ..+..| ...++++|++... ...++.+.+......
T Consensus 1 ~vsl~i~~ge---i~~l~G~nGsGKSTl~~~~~~~~---~~~~~d------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (171)
T 4gp7_A 1 SMKLTIPELS---LVVLIGSSGSGKSTFAKKHFKPT---EVISSD------FCRGLMSDDENDQTVTGAAFDVLHYIVSK 68 (171)
T ss_dssp CEEEEEESSE---EEEEECCTTSCHHHHHHHHSCGG---GEEEHH------HHHHHHCSSTTCGGGHHHHHHHHHHHHHH
T ss_pred CccccCCCCE---EEEEECCCCCCHHHHHHHHccCC---eEEccH------HHHHHhcCcccchhhHHHHHHHHHHHHHH
Confidence 5899999999 99999999999999999854321 112111 1236777776432 122333433321100
Q ss_pred -ccc-cccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHH
Q 012357 134 -KAV-QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (465)
Q Consensus 134 -~~~-~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l 192 (465)
... .....+.. . .......||+.||+++ ..+|.++++|||++++|+..
T Consensus 69 ~~~~g~~~~~~~~-----~-~~s~g~~qrv~iAral-----~~~p~~lllDEPt~~Ld~~~ 118 (171)
T 4gp7_A 69 RLQLGKLTVVDAT-----N-VQESARKPLIEMAKDY-----HCFPVAVVFNLPEKVCQERN 118 (171)
T ss_dssp HHHTTCCEEEESC-----C-CSHHHHHHHHHHHHHT-----TCEEEEEEECCCHHHHHHHH
T ss_pred HHhCCCeEEEECC-----C-CCHHHHHHHHHHHHHc-----CCcEEEEEEeCCHHHHHHHH
Confidence 000 00011100 0 0111235899999999 89999999999999999983
No 76
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.39 E-value=2.9e-15 Score=156.03 Aligned_cols=141 Identities=13% Similarity=0.096 Sum_probs=91.2
Q ss_pred EEEEeeeeeEEecCc-----------------cceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccc
Q 012357 50 FIVIRACQLLAQKNH-----------------GIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGN 111 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge-----------------~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~v 111 (465)
..++++|++.+++|+ .+.++||+||||||||||+++|+|+. |++|.|.++|.+.++ .+++
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~--~~~v 113 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM--ERHP 113 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C--CCEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce--eEEe
Confidence 357889999999998 56699999999999999999999999 899999999876543 2778
Q ss_pred cCCCCCCccchHHHHHHhhhccccc-------cccccccccccccCccccccccchhhhhHhHHhhhh-----ccCccee
Q 012357 112 FDDPRLTDYDTLLENIRGLKEGKAV-------QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLID 179 (465)
Q Consensus 112 fQ~p~l~~~~tv~enL~~l~~~~~~-------~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d-----~~~p~Ld 179 (465)
||++ .++..++.+++.+....... ....++.... ..++ ....||+.|++++..... ...|.++
T Consensus 114 ~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G---~~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 114 YKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISAT---RFKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp EECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESS---CCCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred cccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCC---CccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 8875 34445555544322110000 0000010000 0110 024589999999943110 1288999
Q ss_pred eeeeeecCccHHHHHHHH
Q 012357 180 LRVSVTGGVHFDLVKRVF 197 (465)
Q Consensus 180 llDEpts~LD~~l~rrIl 197 (465)
++||||+++|+....+++
T Consensus 189 lLDEPtsgLD~~~~~~l~ 206 (413)
T 1tq4_A 189 ITNEADGEPQTFDKEKVL 206 (413)
T ss_dssp HHHHHTTCCTTCCHHHHH
T ss_pred ccCcccccCCHHHHHHHH
Confidence 999999999997554444
No 77
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.38 E-value=3.7e-15 Score=139.90 Aligned_cols=162 Identities=11% Similarity=-0.043 Sum_probs=84.4
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCC-CeeEEEECCeec---CccccccccCCCCCCccchHHH
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYND---SSRIIDGNFDDPRLTDYDTLLE 125 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP-~sG~I~lDg~~~---~~~~ig~vfQ~p~l~~~~tv~e 125 (465)
..+++| .++++|+ ++||+||||||||||+++|+|++| ..+.+.+.+... .++.++|+||++..++..++.+
T Consensus 9 ~~~~~~--~~i~~Ge---i~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGR---VVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCC---EEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCC---EEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 456677 6889999 999999999999999999999995 222111111111 1346899999987766666555
Q ss_pred HHHhhhccccccccccccc---cccccC--------ccccccccchhhhhH---hHHhhhhccCcceeeeeeeecCc---
Q 012357 126 NIRGLKEGKAVQVPIYDFK---SSSRIG--------YRTLEVPSSRIVIIE---GIYALSEKLRPLIDLRVSVTGGV--- 188 (465)
Q Consensus 126 nL~~l~~~~~~~~p~~d~~---~~~~~~--------~~~~~l~~qRVlIae---gl~aL~d~~~p~LdllDEpts~L--- 188 (465)
++......... ...+... ..++.. .+...+...+-.... ++ ...|.++++|||++++
T Consensus 84 ~l~~~~~~~~n-~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l-----~~~p~~~~LDep~~~l~~~ 157 (207)
T 1znw_A 84 ELLEWAEIHGG-LHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVF-----LAPPSWQDLQARLIGRGTE 157 (207)
T ss_dssp CEEEEEEEGGG-TEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEE-----EECSCHHHHHHHHHTTSCS
T ss_pred CceeehhhcCc-hhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEE-----EECCCHHHHHHHHHhcCCC
Confidence 44221100000 0000000 000000 000000000000001 22 4578889999999997
Q ss_pred -cHHHHH---HHHHHHHH-cCCCH------HHHHHHHhceEEEcc
Q 012357 189 -HFDLVK---RVFRDIQR-VGQEP------EEIIHQISETVYPMY 222 (465)
Q Consensus 189 -D~~l~r---rIlrdl~e-~G~TI------~~vi~~i~d~V~~m~ 222 (465)
|+...+ ++++++.+ .|.|+ ++.+.++||++++|.
T Consensus 158 ~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 158 TADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 555444 44566654 48888 788999999998874
No 78
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.37 E-value=1e-14 Score=153.01 Aligned_cols=173 Identities=12% Similarity=0.070 Sum_probs=119.1
Q ss_pred eeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe---ecC-----------
Q 012357 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY---NDS----------- 104 (465)
Q Consensus 41 ~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~---~~~----------- 104 (465)
+++++.|+ +..+|+++ |.+.+|+ ++||+||||||||||+++|+|+. |++|.|.++|. +..
T Consensus 135 ~~v~~~~~tg~~vld~v-l~i~~Gq---~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~ 210 (438)
T 2dpy_A 135 TPIEHVLDTGVRAINAL-LTVGRGQ---RMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDG 210 (438)
T ss_dssp CCCCSBCCCSCHHHHHH-SCCBTTC---EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHH
T ss_pred eccceecCCCceEEeee-EEecCCC---EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccc
Confidence 56777776 57799999 9999999 99999999999999999999999 99999999997 321
Q ss_pred -ccccccccCC-CCCCccchHHHHHHhhhccccc-cccccccccccccCccccccccchhhhhHhHHhhhhccCcceeee
Q 012357 105 -SRIIDGNFDD-PRLTDYDTLLENIRGLKEGKAV-QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (465)
Q Consensus 105 -~~~ig~vfQ~-p~l~~~~tv~enL~~l~~~~~~-~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~Ldll 181 (465)
++.+++++|+ ..+++..++.+|+......... ...... ..+. ........|||.|+ + .+|.+
T Consensus 211 l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~--~ld~--l~~lS~g~qrvslA--l------~~p~~--- 275 (438)
T 2dpy_A 211 RARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLL--IMDS--LTRYAMAQREIALA--I------GEPPA--- 275 (438)
T ss_dssp HHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEE--EEEC--HHHHHHHHHHHHHH--T------TCCCC---
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHH--HHHh--HHHHHHHHHHHHHH--h------CCCcc---
Confidence 2457899985 5567788999988764321100 000000 0000 01111222788887 1 23433
Q ss_pred eeeecCccHHHHHHHHHHHH---H---c-CC-----CH----HHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 182 VSVTGGVHFDLVKRVFRDIQ---R---V-GQ-----EP----EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 182 DEpts~LD~~l~rrIlrdl~---e---~-G~-----TI----~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
++++|+.....+.+-+. + + |. |+ .+.-..+||+++.+.+|+|+.+++.+++
T Consensus 276 ---t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 276 ---TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp ---SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHHHHHT
T ss_pred ---cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeCCHHHc
Confidence 99999987665554443 2 2 42 45 1112678999999999999999887765
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.35 E-value=2.4e-14 Score=144.79 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=89.4
Q ss_pred EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCCccchHHHHHHh
Q 012357 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRG 129 (465)
Q Consensus 51 ~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL~~ 129 (465)
.+++++++.+++|+ +++|+||||||||||+++|+|++ |++|.|.++|.... . ..+..+.
T Consensus 159 ~~l~~l~~~i~~g~---~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~----~-~~~~~~~------------ 218 (330)
T 2pt7_A 159 QAISAIKDGIAIGK---NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI----V-FKHHKNY------------ 218 (330)
T ss_dssp HHHHHHHHHHHHTC---CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC----C-CSSCSSE------------
T ss_pred HHHhhhhhhccCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc----c-cccchhE------------
Confidence 47899999999999 99999999999999999999999 89999999985321 0 0000000
Q ss_pred hhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH--
Q 012357 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP-- 207 (465)
Q Consensus 130 l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI-- 207 (465)
+. + .. + ....||+.|++++ ..+|.++++|||++. ...++++.+...+.|+
T Consensus 219 ------i~---~--~~----g----gg~~~r~~la~aL-----~~~p~ilildE~~~~----e~~~~l~~~~~g~~tvi~ 270 (330)
T 2pt7_A 219 ------TQ---L--FF----G----GNITSADCLKSCL-----RMRPDRIILGELRSS----EAYDFYNVLCSGHKGTLT 270 (330)
T ss_dssp ------EE---E--EC----B----TTBCHHHHHHHHT-----TSCCSEEEECCCCST----HHHHHHHHHHTTCCCEEE
T ss_pred ------EE---E--Ee----C----CChhHHHHHHHHh-----hhCCCEEEEcCCChH----HHHHHHHHHhcCCCEEEE
Confidence 00 0 00 0 1235899999999 889999999999983 2445666665433343
Q ss_pred ----HHHHHHHhceEEEccCc
Q 012357 208 ----EEIIHQISETVYPMYKA 224 (465)
Q Consensus 208 ----~~vi~~i~d~V~~m~~G 224 (465)
.+ +...||++..|.+|
T Consensus 271 t~H~~~-~~~~~dri~~l~~g 290 (330)
T 2pt7_A 271 TLHAGS-SEEAFIRLANMSSS 290 (330)
T ss_dssp EEECSS-HHHHHHHHHHHHHT
T ss_pred EEcccH-HHHHhhhheehhcC
Confidence 33 55677887777665
No 80
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.34 E-value=9.6e-15 Score=132.83 Aligned_cols=85 Identities=19% Similarity=0.080 Sum_probs=71.0
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCc--cccccccCCCCCC
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS--RIIDGNFDDPRLT 118 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~~--~~ig~vfQ~p~l~ 118 (465)
.++++.|+...+++++||++++|+ +++|+||||||||||+++|+|++|.+|.|.++|+.+.. ....++||++.++
T Consensus 11 ~~~~~~~g~~~~l~~vsl~i~~Ge---~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~ 87 (158)
T 1htw_A 11 EFSMLRFGKKFAEILLKLHTEKAI---MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLY 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCE---EEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHHHHHHhccccccCCCC---EEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeeeccCCCcceeccccc
Confidence 445566666778999999999999 99999999999999999999999999999999987631 1123789999888
Q ss_pred ccchHHHHHHh
Q 012357 119 DYDTLLENIRG 129 (465)
Q Consensus 119 ~~~tv~enL~~ 129 (465)
..++.+++.+
T Consensus 88 -~ltv~e~l~~ 97 (158)
T 1htw_A 88 -RLADPEELEF 97 (158)
T ss_dssp -TCSCTTHHHH
T ss_pred -cCCcHHHHHH
Confidence 7889888865
No 81
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.34 E-value=6.6e-16 Score=154.85 Aligned_cols=158 Identities=8% Similarity=0.081 Sum_probs=96.3
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCccccccccCCCCCCc
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~~~~ig~vfQ~p~l~~ 119 (465)
.++++|.|+ ..+|+++||++++|+ +++|+||||||||||+++|+|++ +|.|. ++++|++.++.
T Consensus 104 ~~~vs~~y~-~~vL~~vsl~i~~Ge---~vaIvGpsGsGKSTLl~lL~gl~--~G~I~-----------~~v~q~~~lf~ 166 (305)
T 2v9p_A 104 YQNIELITF-INALKLWLKGIPKKN---CLAFIGPPNTGKSMLCNSLIHFL--GGSVL-----------SFANHKSHFWL 166 (305)
T ss_dssp HTTCCHHHH-HHHHHHHHHTCTTCS---EEEEECSSSSSHHHHHHHHHHHH--TCEEE-----------CGGGTTSGGGG
T ss_pred EEEEEEEcC-hhhhccceEEecCCC---EEEEECCCCCcHHHHHHHHhhhc--CceEE-----------EEecCcccccc
Confidence 357788876 578999999999999 99999999999999999999998 78774 34555555443
Q ss_pred cchHHH-HHHhhhccc-cccccccccccccccCcccccc-ccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHH
Q 012357 120 YDTLLE-NIRGLKEGK-AVQVPIYDFKSSSRIGYRTLEV-PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV 196 (465)
Q Consensus 120 ~~tv~e-nL~~l~~~~-~~~~p~~d~~~~~~~~~~~~~l-~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrI 196 (465)
.++.+ |+.+..... ... ...+........+..++. ..|| |+++ ..+|.+++ |++||+....++
T Consensus 167 -~ti~~~ni~~~~~~~~~~~-~~i~~~L~~gldg~~LSgGqkQR---ARAl-----l~~p~iLl----Ts~LD~~~~~~i 232 (305)
T 2v9p_A 167 -ASLADTRAALVDDATHACW-RYFDTYLRNALDGYPVSIDRKHK---AAVQ-----IKAPPLLV----TSNIDVQAEDRY 232 (305)
T ss_dssp -GGGTTCSCEEEEEECHHHH-HHHHHTTTGGGGTCCEECCCSSC---CCCE-----ECCCCEEE----EESSCSTTCGGG
T ss_pred -ccHHHHhhccCccccHHHH-HHHHHHhHccCCccCcCHHHHHH---HHHH-----hCCCCEEE----ECCCCHHHHHHH
Confidence 24443 433221000 000 000000000000112222 2366 8888 78888888 999999865555
Q ss_pred HHHHHHcCCCHHHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 197 FRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 197 lrdl~e~G~TI~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
. .+..+ .. ...+||++ +|.+|+++..|.+.++
T Consensus 233 ~-~ltH~----~~-~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 233 L-YLHSR----VQ-TFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp G-GGTTT----EE-EEECCCCC-CCC---CCCCCCHHHH
T ss_pred H-HHhCC----HH-HHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 4 22111 01 12478999 9999998887776654
No 82
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.34 E-value=2.2e-14 Score=146.25 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=109.5
Q ss_pred eEEEECCeecCccc---------cccccCCCCCCccchHHHHHHhhhcc-----------------------------cc
Q 012357 94 AVITMDNYNDSSRI---------IDGNFDDPRLTDYDTLLENIRGLKEG-----------------------------KA 135 (465)
Q Consensus 94 G~I~lDg~~~~~~~---------ig~vfQ~p~l~~~~tv~enL~~l~~~-----------------------------~~ 135 (465)
..|+||||+..+.. .-..+.+|..|+...+.+.+..++.+ ..
T Consensus 157 ~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 2ga8_A 157 QIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPD 236 (359)
T ss_dssp EEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCC
T ss_pred EEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCce
Confidence 36789999876433 23355678888888888777776655 35
Q ss_pred ccccccccccccccCccccccccchhhhhHhHHhhhh-----ccCccee-----eeeeeecCccHHHHHHHHHHHHHcCC
Q 012357 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLID-----LRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (465)
Q Consensus 136 ~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d-----~~~p~Ld-----llDEpts~LD~~l~rrIlrdl~e~G~ 205 (465)
+..|.|++....+........+..+++|+||+++|++ .++..+| +..+++++.|.+..|.+.|++ +.|.
T Consensus 237 v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~-~~Gl 315 (359)
T 2ga8_A 237 IFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHL-QSGL 315 (359)
T ss_dssp EEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHH-HTTS
T ss_pred EeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhh-ccCC
Confidence 6789999998887765444445579999999988876 2456777 888999988888777777776 4798
Q ss_pred --CHHHHHHHHhceEEEccCcEEEecCCcceEEee
Q 012357 206 --EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (465)
Q Consensus 206 --TI~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~ 238 (465)
+..+...++.....++. .+|.|+...||+|+.
T Consensus 316 ~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~ 349 (359)
T 2ga8_A 316 VTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVH 349 (359)
T ss_dssp CSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEE
T ss_pred CCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEE
Confidence 99999999988888866 789999999998864
No 83
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.33 E-value=2.5e-14 Score=135.90 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=43.9
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC--------ccccccccCCCCCCcc
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--------SRIIDGNFDDPRLTDY 120 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~--------~~~ig~vfQ~p~l~~~ 120 (465)
...|++|||++++|+ +++|+||||||||||+++|+|+.| |.|.+ |.+.. ++.++|+||++.+|+.
T Consensus 10 ~~~l~~isl~i~~G~---~~~lvGpsGsGKSTLl~~L~g~~p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIY---PLVICGPSGVGKGTLIKKLLNEFP--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCC---CEEEECSTTSSHHHHHHHHHHHST--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCC---EEEEECCCCCCHHHHHHHHHhhCC--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 457899999999999 999999999999999999999987 88888 65432 2468899998765543
No 84
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.32 E-value=2.5e-13 Score=135.12 Aligned_cols=172 Identities=18% Similarity=0.293 Sum_probs=119.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC-CC-----eeEE-EECCeecCcc---cccc------c---cCCCCCCccchHHH
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVI-TMDNYNDSSR---IIDG------N---FDDPRLTDYDTLLE 125 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll-P~-----sG~I-~lDg~~~~~~---~ig~------v---fQ~p~l~~~~tv~e 125 (465)
++.+|||+|+||||||||++.|.+++ +. .+.+ ++|+++.... .+.+ . +..|..++...+.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~ 109 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQE 109 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHHH
Confidence 45699999999999999999999998 42 4556 9999876531 2211 1 12477788778888
Q ss_pred HHHhhhcc------cccccccccccc----ccccCcc-ccccccchhhhhHhHHhhhh-c--------------------
Q 012357 126 NIRGLKEG------KAVQVPIYDFKS----SSRIGYR-TLEVPSSRIVIIEGIYALSE-K-------------------- 173 (465)
Q Consensus 126 nL~~l~~~------~~~~~p~~d~~~----~~~~~~~-~~~l~~qRVlIaegl~aL~d-~-------------------- 173 (465)
.+..+..+ ..+..|.|++.. +++.... ...+ +.+|+|+||.++.++ .
T Consensus 110 ~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~n~~ 188 (290)
T 1odf_A 110 VLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAK 188 (290)
T ss_dssp HHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHHHHH
T ss_pred HHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHHHHH
Confidence 88887766 446678888777 5555431 2334 678999999987554 2
Q ss_pred -------cCcceeee---eeeecCccHHHHH-HHHH--HH-HHc--CCCHHHHHHHHhceEEEccCcEEEec------CC
Q 012357 174 -------LRPLIDLR---VSVTGGVHFDLVK-RVFR--DI-QRV--GQEPEEIIHQISETVYPMYKAFIEPD------LQ 231 (465)
Q Consensus 174 -------~~p~Ldll---DEpts~LD~~l~r-rIlr--dl-~e~--G~TI~~vi~~i~d~V~~m~~G~I~~~------g~ 231 (465)
+++.+|++ ++.+++-+....+ |+.| ++ .++ |++..+ +.++.++++++|+.++.+. ..
T Consensus 189 l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~-v~~~~~~~~p~y~~~~~~~~~~~~~~~ 267 (290)
T 1odf_A 189 LFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQ-VHAFVDRYMPSYKLYLNDFVRSESLGS 267 (290)
T ss_dssp HHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHH-HHHHHHTTHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHH-HHHHHHHhcchHHHHhHHHHHhccCCC
Confidence 35556777 8888855555444 7877 54 345 889877 4788889888777655431 23
Q ss_pred cceEEee
Q 012357 232 TAHIKII 238 (465)
Q Consensus 232 ~aDIiI~ 238 (465)
.||+++.
T Consensus 268 ~adlvl~ 274 (290)
T 1odf_A 268 IATLTLG 274 (290)
T ss_dssp SEEEEEE
T ss_pred CCCEEEE
Confidence 7888875
No 85
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.32 E-value=8.4e-14 Score=137.09 Aligned_cols=125 Identities=10% Similarity=0.020 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----ccccccccCCCCCCccchHHHHHHhhhcccc--cccc
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA--VQVP 139 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~--~~~p 139 (465)
+.+||+||||||||||+++|+|+. |++|.|.++|.+.. ++.+++++|++.+++..|+.+++.+...... ...+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 579999999999999999999999 99999999998653 3568999999999888899888776432111 0001
Q ss_pred ccccccc---cccCccccc-cccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHH
Q 012357 140 IYDFKSS---SRIGYRTLE-VPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (465)
Q Consensus 140 ~~d~~~~---~~~~~~~~~-l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~ 201 (465)
..++... .... ..++ ...||+.+++++ . .+.++|+|+.++|+.. .++++.+.
T Consensus 83 i~~~~~~~~~~~~~-~~LS~G~~qrv~iaRal-----~---~lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 83 IEKYINEQYEKFLK-EEVNIARKKRIPDTRVH-----C---CLYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp HHHHHHHHHHHHHH-HHSCTTCCSSCCCCSCC-----E---EEEEECCCSSSCCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHhhhH-HhcCcccchhhhhheee-----e---eeEEEecCCCcCCHHH-HHHHHHHH
Confidence 1000000 0000 1111 234789999887 4 2889999999999865 34444443
No 86
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.26 E-value=1.6e-12 Score=120.11 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=77.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeec-------CccccccccCCCCCCccchHHHHHHhhhccccccccc
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 140 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~-------~~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~ 140 (465)
.++|+||||||||||+++|+|+++ |.++|++. .++.+++++|++... +++ +.. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~------~~~--~~~---~---- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITTEGK------KKI--FSS---K---- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEETTCC------EEE--EEE---T----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecCcHH------HHH--HHh---h----
Confidence 689999999999999999999983 33444321 235688998876211 111 000 0
Q ss_pred cccccccccCccc--cc-cccchhhhhHh-----HHhhhhccCcceeeeee--eecCccHHHHHHHHHHHHHcCCCH---
Q 012357 141 YDFKSSSRIGYRT--LE-VPSSRIVIIEG-----IYALSEKLRPLIDLRVS--VTGGVHFDLVKRVFRDIQRVGQEP--- 207 (465)
Q Consensus 141 ~d~~~~~~~~~~~--~~-l~~qRVlIaeg-----l~aL~d~~~p~LdllDE--pts~LD~~l~rrIlrdl~e~G~TI--- 207 (465)
.+......+... .+ ...||+.|+++ + ..+|.++++|| |++++|+.....+.+-+.+.+.|+
T Consensus 63 -~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l-----~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~ 136 (178)
T 1ye8_A 63 -FFTSKKLVGSYGVNVQYFEELAIPILERAYREAK-----KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVAT 136 (178)
T ss_dssp -TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHH-----HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEE
T ss_pred -cCCccccccccccCcCHHHHHHHHHHhhcccccc-----ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEE
Confidence 000000111011 11 23489999996 7 78899999999 999999988776666655445433
Q ss_pred ------HHHHHHHhce
Q 012357 208 ------EEIIHQISET 217 (465)
Q Consensus 208 ------~~vi~~i~d~ 217 (465)
...+..+|++
T Consensus 137 ~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 137 IPIRDVHPLVKEIRRL 152 (178)
T ss_dssp CCSSCCSHHHHHHHTC
T ss_pred EccCCCchHHHHHHhc
Confidence 3566667666
No 87
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.25 E-value=1.5e-12 Score=141.84 Aligned_cols=148 Identities=12% Similarity=0.079 Sum_probs=91.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-C-CeeEEEECCeec----------CccccccccCCCCCCccchHHHHHHhhhcccc
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYND----------SSRIIDGNFDDPRLTDYDTLLENIRGLKEGKA 135 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-P-~sG~I~lDg~~~----------~~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~ 135 (465)
.+||+|+||||||||+++|+|+. | ++|.|.++|.++ .++.++|+||++.+++..++.+++........
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 49999999999999999999999 8 799999999873 13568999999999999999999987532110
Q ss_pred ccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeee------ecCccHHHH---HHHHHHHHHcCCC
Q 012357 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV------TGGVHFDLV---KRVFRDIQRVGQE 206 (465)
Q Consensus 136 ~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEp------ts~LD~~l~---rrIlrdl~e~G~T 206 (465)
.... ....+.+.+.... ...|.+.++||| |+++|+... +.+++.+..++.+
T Consensus 127 ~~~~---------------~~s~~~i~l~i~~-----~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~ 186 (608)
T 3szr_A 127 GEGM---------------GISHELITLEISS-----RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQET 186 (608)
T ss_dssp CSSS---------------CCCSCCEEEEEEE-----SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSC
T ss_pred CCcc---------------ccchHHHHHHhcC-----CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 0000 0011111111111 346889999999 999998754 4455554333333
Q ss_pred H----------------HHHHHHH----hceEEEccCcEEEecCCcceE
Q 012357 207 P----------------EEIIHQI----SETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 207 I----------------~~vi~~i----~d~V~~m~~G~I~~~g~~aDI 235 (465)
+ ..++.++ +..+.++.++-++..+...++
T Consensus 187 iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 187 ISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp CEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCC
T ss_pred CceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHH
Confidence 2 3344444 355778888777776665443
No 88
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.24 E-value=7.9e-13 Score=129.47 Aligned_cols=124 Identities=15% Similarity=0.189 Sum_probs=86.3
Q ss_pred EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CC-eeEEEECCeecCccccccccCCCCCCccchHHHHHH
Q 012357 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (465)
Q Consensus 51 ~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~-sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL~ 128 (465)
.+|++++ +++|+ +++|+||||||||||+++|+|++ |+ +|.|.++|.+ +++++|++..+-
T Consensus 15 ~vl~~i~--i~~g~---~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-----i~~~~~~~~~~v--------- 75 (261)
T 2eyu_A 15 DKVLELC--HRKMG---LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-----IEYVFKHKKSIV--------- 75 (261)
T ss_dssp THHHHGG--GCSSE---EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-----CCSCCCCSSSEE---------
T ss_pred HHHHHHh--hCCCC---EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-----ceeecCCcceee---------
Confidence 4788888 79999 99999999999999999999999 76 8999998864 345555432110
Q ss_pred hhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH-
Q 012357 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP- 207 (465)
Q Consensus 129 ~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI- 207 (465)
+. ..++... ..-++.|++++ ..+|.+.++|||+ |+..++.+++.. +.|.++
T Consensus 76 ----------~q------~~~gl~~---~~l~~~la~aL-----~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl 127 (261)
T 2eyu_A 76 ----------NQ------REVGEDT---KSFADALRAAL-----REDPDVIFVGEMR---DLETVETALRAA-ETGHLVF 127 (261)
T ss_dssp ----------EE------EEBTTTB---SCHHHHHHHHH-----HHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEE
T ss_pred ----------eH------HHhCCCH---HHHHHHHHHHH-----hhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEE
Confidence 00 0111111 11278999999 7899999999999 888777666653 457665
Q ss_pred -----HHHHHHHhceEEEcc
Q 012357 208 -----EEIIHQISETVYPMY 222 (465)
Q Consensus 208 -----~~vi~~i~d~V~~m~ 222 (465)
.+ +..+||+++.|.
T Consensus 128 ~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 128 GTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp EEECCSS-HHHHHHHHHHTS
T ss_pred EEeCcch-HHHHHHHHhhhc
Confidence 22 344566655553
No 89
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.23 E-value=1.5e-12 Score=122.11 Aligned_cols=143 Identities=15% Similarity=0.065 Sum_probs=82.7
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C-------CeeEEEECCeec-CccccccccCCCCCCccchHHHHHHh
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-------SIAVITMDNYND-SSRIIDGNFDDPRLTDYDTLLENIRG 129 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P-------~sG~I~lDg~~~-~~~~ig~vfQ~p~l~~~~tv~enL~~ 129 (465)
.+++|+ +++|+||||||||||+++|+|.. + ..+.+.+++... ..+.+++++|.+.+++. ++.+|+.+
T Consensus 21 gi~~G~---~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 21 GIETQA---ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SEESSE---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCc---EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 468999 99999999999999999999966 4 455888887653 23457777777665543 55555432
Q ss_pred hhccccccccccccccccccCccccccccchhhhhHhHHh-hh-hccCcceeeeeeeecCccHH---------------H
Q 012357 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA-LS-EKLRPLIDLRVSVTGGVHFD---------------L 192 (465)
Q Consensus 130 l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~a-L~-d~~~p~LdllDEpts~LD~~---------------l 192 (465)
.... . .. .. ...+-.+..++. .. ....|.+.++|||++.+|+. .
T Consensus 97 ~~~~--------~--~~-----~~----~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~ 157 (231)
T 4a74_A 97 ARAF--------N--SN-----HQ----MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAK 157 (231)
T ss_dssp EECC--------S--HH-----HH----HHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHH
T ss_pred EecC--------C--hH-----HH----HHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHH
Confidence 1100 0 00 00 001111111111 00 14589999999999998873 1
Q ss_pred HHHHHHHHH-HcCCCH------H----HHHHHHhceEEEccCc
Q 012357 193 VKRVFRDIQ-RVGQEP------E----EIIHQISETVYPMYKA 224 (465)
Q Consensus 193 ~rrIlrdl~-e~G~TI------~----~vi~~i~d~V~~m~~G 224 (465)
+.+.++++. +.|.|+ . ..+.++||+++.++++
T Consensus 158 ~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 158 HLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 222233333 447776 1 2356667777766653
No 90
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.20 E-value=1.6e-11 Score=122.93 Aligned_cols=116 Identities=15% Similarity=0.067 Sum_probs=80.3
Q ss_pred cCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc-------------cccccccCCCCCCccchHHHHH
Q 012357 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------------RIIDGNFDDPRLTDYDTLLENI 127 (465)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~-------------~~ig~vfQ~p~l~~~~tv~enL 127 (465)
+|+ +++|+||||||||||+++|++++ |+.|.|.++|.+..+ ..++++||++.+++..++.+++
T Consensus 101 ~g~---vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGR---VVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSS---EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCe---EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 577 99999999999999999999999 999999999987532 3478999999999999999999
Q ss_pred HhhhccccccccccccccccccCc---cccccccchhhhhHhHHhhhhccCcc--eeeeeeeecCcc
Q 012357 128 RGLKEGKAVQVPIYDFKSSSRIGY---RTLEVPSSRIVIIEGIYALSEKLRPL--IDLRVSVTGGVH 189 (465)
Q Consensus 128 ~~l~~~~~~~~p~~d~~~~~~~~~---~~~~l~~qRVlIaegl~aL~d~~~p~--LdllDEpts~LD 189 (465)
....... ......+. ..+... ....+..+|++|++++ ...|. ++.+| ++++.+
T Consensus 178 ~~~~~~~-~d~~llDt--~G~~~~~~~~~~eLs~~r~~iaRal-----~~~P~~~lLvLD-a~t~~~ 235 (304)
T 1rj9_A 178 QAMKARG-YDLLFVDT--AGRLHTKHNLMEELKKVKRAIAKAD-----PEEPKEVWLVLD-AVTGQN 235 (304)
T ss_dssp HHHHHHT-CSEEEECC--CCCCTTCHHHHHHHHHHHHHHHHHC-----TTCCSEEEEEEE-TTBCTH
T ss_pred HHHHhCC-CCEEEecC--CCCCCchHHHHHHHHHHHHHHHHhh-----cCCCCeEEEEEc-HHHHHH
Confidence 8653211 11111111 001110 0112346899999999 77776 44444 444443
No 91
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.20 E-value=4.6e-13 Score=133.01 Aligned_cols=169 Identities=17% Similarity=0.257 Sum_probs=116.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcCC----CeeEEEECCeecC-ccc----------cc-cccCC--CCCCccchHHHHH
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS-SRI----------ID-GNFDD--PRLTDYDTLLENI 127 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllP----~sG~I~lDg~~~~-~~~----------ig-~vfQ~--p~l~~~~tv~enL 127 (465)
+.+|||.|++||||||+++.|...++ ....|..|+++.. ... .| ..++. +..++...+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~l 84 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERVF 84 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHHH
Confidence 45999999999999999999988652 3678899998742 211 11 23444 5556655566666
Q ss_pred Hhhhccccccccccccc-----cccccCccc---ccc-ccchhhhhHhHHhh----hhccCcceeeeeeeecCccHHHHH
Q 012357 128 RGLKEGKAVQVPIYDFK-----SSSRIGYRT---LEV-PSSRIVIIEGIYAL----SEKLRPLIDLRVSVTGGVHFDLVK 194 (465)
Q Consensus 128 ~~l~~~~~~~~p~~d~~-----~~~~~~~~~---~~l-~~qRVlIaegl~aL----~d~~~p~LdllDEpts~LD~~l~r 194 (465)
..+..+.....|.|++. .+....... ... ....++|+||.+++ .....+..|++++++++.+.+..|
T Consensus 85 ~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~R 164 (290)
T 1a7j_A 85 REYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQ 164 (290)
T ss_dssp HHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHHH
T ss_pred HHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHHH
Confidence 66655555556666331 111111111 112 34679999999887 235678889999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHhceEEEccCcEEEecCCcceE
Q 012357 195 RVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHI 235 (465)
Q Consensus 195 rIlrdl~e~G~TI~~vi~~i~d~V~~m~~G~I~~~g~~aDI 235 (465)
++.|++.++|.+..+++..+..+ .+.+..+|.|....||+
T Consensus 165 rl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~ 204 (290)
T 1a7j_A 165 KIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDI 204 (290)
T ss_dssp HHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSE
T ss_pred HhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCE
Confidence 98899888899988888888777 77777888899999999
No 92
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.18 E-value=2.4e-12 Score=122.27 Aligned_cols=149 Identities=9% Similarity=0.063 Sum_probs=81.1
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHH--hcC-CCeeEEEECCeecC------ccccccccCCCCCCccchHHHHHHh
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVL--NFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLTDYDTLLENIRG 129 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~--gll-P~sG~I~lDg~~~~------~~~ig~vfQ~p~l~~~~tv~enL~~ 129 (465)
.+++|+ +++|+||||||||||+++|+ ++. +..+.+.+++.... .+.+++.+|++......++.++...
T Consensus 26 gi~~G~---~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 26 GFPEGT---TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp SEETTC---EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCCc---EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 579999 99999999999999999999 774 66777777664322 1234555544221111111111110
Q ss_pred hhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCcc-----HH---HHHHHHHHHH
Q 012357 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH-----FD---LVKRVFRDIQ 201 (465)
Q Consensus 130 l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD-----~~---l~rrIlrdl~ 201 (465)
...... ...+ ... ..... . -+++.+........|.+.++|||++.+| +. .+.++++.++
T Consensus 103 ~~~~~~--~~~~--~~~-----~~~~~--~--~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~ 169 (251)
T 2ehv_A 103 VVGLPS--EEKF--VLE-----DRFNV--D--NFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILL 169 (251)
T ss_dssp ------------------------CCH--H--HHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH
T ss_pred cccccc--ccce--ecc-----CcccH--H--HHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 000000 0000 000 00000 0 0111111112256899999999999987 33 2456677777
Q ss_pred HcCCCH------HHHH---------HHHh-ceEEEccC
Q 012357 202 RVGQEP------EEII---------HQIS-ETVYPMYK 223 (465)
Q Consensus 202 e~G~TI------~~vi---------~~i~-d~V~~m~~ 223 (465)
+.|.|+ ...+ ..+| |++++|..
T Consensus 170 ~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 170 EMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 789888 3333 5777 99988864
No 93
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.18 E-value=6.1e-13 Score=142.22 Aligned_cols=156 Identities=14% Similarity=0.065 Sum_probs=99.3
Q ss_pred CcEEEEeeeee-EEecCccceEEEEEcCCCCcHHHHHHH--HHhcC-CCeeEEEECCeecC------ccccccccCCCCC
Q 012357 48 GFFIVIRACQL-LAQKNHGIILVGVAGPSGAGKTVFTEK--VLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPRL 117 (465)
Q Consensus 48 g~~~aL~~VsL-~i~~Ge~~~IigIiGpSGSGKSTL~r~--L~gll-P~sG~I~lDg~~~~------~~~ig~vfQ~p~l 117 (465)
++..+|++|++ .+++|+ +++|+||||||||||+++ ++|+. |+.|.|.++|.+.. .+.+|++||++..
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge---~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~ 99 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGR---STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVD 99 (525)
T ss_dssp CCCTTHHHHTTSSEETTS---EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHH
T ss_pred CCchhHHHhcCCCCCCCe---EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhc
Confidence 34668899999 999999 999999999999999999 78999 79999999997632 2457888887532
Q ss_pred CccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecC-----ccHHH
Q 012357 118 TDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGG-----VHFDL 192 (465)
Q Consensus 118 ~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~-----LD~~l 192 (465)
.. ++..... .. .. ...+.. ....+....--+...+ ....|.+.++|+|++. +|+..
T Consensus 100 ~~------~l~~~~~-~~---~~---~~~~~l--~~~~l~~~~~~~~~~L----S~g~~~~lilDe~t~~~~~~~lD~~~ 160 (525)
T 1tf7_A 100 EG------KLFILDA-SP---DP---EGQEVV--GGFDLSALIERINYAI----QKYRARRVSIDSVTSVFQQYDASSVV 160 (525)
T ss_dssp TT------SEEEEEC-CC---CS---SCCSCC--SSHHHHHHHHHHHHHH----HHHTCSEEEEECSTTTSTTTCCHHHH
T ss_pred cC------cEEEEec-Cc---cc---chhhhh--cccCHHHHHHHHHHHH----HHcCCCEEEECCHHHHHHhcCCHHHH
Confidence 11 0100000 00 00 000000 0001111111122222 1346789999999874 57764
Q ss_pred ---HHHHHHHHHHcCCCH------HHH---------HHHHhceEEEccCcE
Q 012357 193 ---VKRVFRDIQRVGQEP------EEI---------IHQISETVYPMYKAF 225 (465)
Q Consensus 193 ---~rrIlrdl~e~G~TI------~~v---------i~~i~d~V~~m~~G~ 225 (465)
+.++++.++++|.|+ .+. +..+||+|++|.++.
T Consensus 161 ~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 161 RRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 455667777789888 232 466799999998854
No 94
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.18 E-value=2e-11 Score=124.96 Aligned_cols=70 Identities=7% Similarity=0.006 Sum_probs=53.6
Q ss_pred cchhhhhHhHHhhh-hccCcceeeeeeeecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEE
Q 012357 158 SSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIE 227 (465)
Q Consensus 158 ~qRVlIaegl~aL~-d~~~p~LdllDEpts~LD~~l~rrIl---rdl~e~G~TI------~~vi~~i~d~V~~m~~G~I~ 227 (465)
.||+.|++++.... -..+|.++++||||++||+.....++ +++.+.|.|+ ++. ..+||++++|.+|+++
T Consensus 285 ~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~~~l~~G~i~ 363 (365)
T 3qf7_A 285 RALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRKLRITGGVVV 363 (365)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCEEEEETTEEC
T ss_pred HHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEEEEEECCEEE
Confidence 39999999993211 12589999999999999999766554 5555568888 555 6679999999999986
Q ss_pred e
Q 012357 228 P 228 (465)
Q Consensus 228 ~ 228 (465)
.
T Consensus 364 ~ 364 (365)
T 3qf7_A 364 N 364 (365)
T ss_dssp -
T ss_pred e
Confidence 4
No 95
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.17 E-value=6.7e-12 Score=121.21 Aligned_cols=174 Identities=30% Similarity=0.548 Sum_probs=119.7
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC--C-------CeeEEEECCeecC--c-----ccc-ccccCCCCCCccchHHHH
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM--P-------SIAVITMDNYNDS--S-----RII-DGNFDDPRLTDYDTLLEN 126 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll--P-------~sG~I~lDg~~~~--~-----~~i-g~vfQ~p~l~~~~tv~en 126 (465)
.++++|||.|++||||||+++.|+..+ + ..-.|.+|++... . ... .++|++|..++...+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~ 99 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKT 99 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHH
Confidence 346799999999999999999999866 2 2336888887532 1 112 357888888877777777
Q ss_pred HHhhhccccccccccccccccccCccccccccchhhhhHhHHhhh-hccCcceeeeeeeecCccHHHHHHHHHHHHHcCC
Q 012357 127 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (465)
Q Consensus 127 L~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~-d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~ 205 (465)
|..+..+..+..|.|++..+.+.. .........++|++|.+++. +.+...+++..+.+++.+....|...|+...+|.
T Consensus 100 L~~l~~~~~v~~~~~d~~~~~~~~-~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg~ 178 (252)
T 1uj2_A 100 LKEITEGKTVQIPVYDFVSHSRKE-ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGR 178 (252)
T ss_dssp HHHHHTTCCEEEEEEETTTTEEEE-EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCeeecCccccccccCCC-ceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhCC
Confidence 777766666667777776654442 22223346789999987763 4455557888899988877766666677767788
Q ss_pred CHHHHHHHHhceEEEccCcEEEecCCcceEEee
Q 012357 206 EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (465)
Q Consensus 206 TI~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~ 238 (465)
+...+..+|..++.+.+..++.|....||++++
T Consensus 179 ~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~ 211 (252)
T 1uj2_A 179 DLEQILSQYITFVKPAFEEFCLPTKKYADVIIP 211 (252)
T ss_dssp CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE
T ss_pred CHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEe
Confidence 887777777666544444444455667888873
No 96
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.15 E-value=5.3e-12 Score=144.55 Aligned_cols=149 Identities=13% Similarity=0.048 Sum_probs=97.5
Q ss_pred eEeee-CcEEEEeeeeeEEec-------CccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccc-ccc
Q 012357 43 LSFEK-GFFIVIRACQLLAQK-------NHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIID-GNF 112 (465)
Q Consensus 43 ls~~~-g~~~aL~~VsL~i~~-------Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig-~vf 112 (465)
+++.| +...++++++|.+++ |+ +++|+||||||||||+|++ |++ + ..++| |+|
T Consensus 761 l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~---i~~ItGpNgsGKSTlLr~i-Gl~~~-------------~aqiG~~Vp 823 (1022)
T 2o8b_B 761 ITKTFFGDDFIPNDILIGCEEEEQENGKAY---CVLVTGPNMGGKSTLMRQA-GLLAV-------------MAQMGCYVP 823 (1022)
T ss_dssp ------CCCCCCEEEEESCCCSCC---CCC---EEEEECCTTSSHHHHHHHH-HHHHH-------------HHTTTCCEE
T ss_pred EEEEecCCceEeeeeeeccccccccCCCCc---EEEEECCCCCChHHHHHHH-HHHHH-------------HhheeEEec
Confidence 45555 556789999999887 89 9999999999999999999 887 3 12455 788
Q ss_pred CCCCCCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHH
Q 012357 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (465)
Q Consensus 113 Q~p~l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l 192 (465)
|++. ..++.++|.. .-+. .+. .. .+.........++.++.++ +..|.+.++|||++|+|+..
T Consensus 824 q~~~---~l~v~d~I~~-rig~------~d~-~~--~~~stf~~em~~~a~al~l-----a~~~sLlLLDEp~~Gtd~~d 885 (1022)
T 2o8b_B 824 AEVC---RLTPIDRVFT-RLGA------SDR-IM--SGESTFFVELSETASILMH-----ATAHSLVLVDELGRGTATFD 885 (1022)
T ss_dssp SSEE---EECCCSBEEE-ECC------------------CHHHHHHHHHHHHHHH-----CCTTCEEEEECTTTTSCHHH
T ss_pred cCcC---CCCHHHHHHH-HcCC------HHH-Hh--hchhhhHHHHHHHHHHHHh-----CCCCcEEEEECCCCCCChHH
Confidence 8752 2233222210 0000 000 00 0101111223457777777 88999999999999999864
Q ss_pred ----HHHHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEE
Q 012357 193 ----VKRVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIE 227 (465)
Q Consensus 193 ----~rrIlrdl~e~-G~TI------~~vi~~i~d~V~~m~~G~I~ 227 (465)
.+.+++.+.++ |.++ .+.+..+|+++.++ +|++.
T Consensus 886 g~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 886 GTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 46778888876 7766 78888899998886 47766
No 97
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.13 E-value=1.4e-12 Score=121.86 Aligned_cols=168 Identities=17% Similarity=0.278 Sum_probs=86.7
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccc--cccCC-------CCCCccchHHHHH-Hh
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIID--GNFDD-------PRLTDYDTLLENI-RG 129 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig--~vfQ~-------p~l~~~~tv~enL-~~ 129 (465)
.+|. ++||+|+||||||||++.|++.+ +..|.+.+.+.+....... ..+.. +..++...+.+.+ ..
T Consensus 20 ~~~~---~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~ 96 (201)
T 1rz3_A 20 AGRL---VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQ 96 (201)
T ss_dssp SSSE---EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGG
T ss_pred CCCe---EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHH
Confidence 4566 99999999999999999999998 6666665543332111000 00000 1223333444443 22
Q ss_pred hhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHH
Q 012357 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (465)
Q Consensus 130 l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~ 209 (465)
+..+.....+.|++....... .........++|++|.+++.+...+.+|+..+++++.+.+..|.+.|+ .+
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~--------~~ 167 (201)
T 1rz3_A 97 LKASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV--------KQ 167 (201)
T ss_dssp TTTCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC----------------------
T ss_pred HhcCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC--------HH
Confidence 333334455666655322111 122234567899999988876677778899999998887766555555 12
Q ss_pred HHHHHhceEEEccCcEEEec--CCcceEEeeCC
Q 012357 210 IIHQISETVYPMYKAFIEPD--LQTAHIKIINK 240 (465)
Q Consensus 210 vi~~i~d~V~~m~~G~I~~~--g~~aDIiI~~~ 240 (465)
...++.++..+.++.++.+. ...||++|.|+
T Consensus 168 ~~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 168 NIQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 23333333333333333222 45788888653
No 98
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.13 E-value=1.2e-11 Score=121.82 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=40.0
Q ss_pred EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCee-EEEEC
Q 012357 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMD 99 (465)
Q Consensus 51 ~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG-~I~lD 99 (465)
.+|+++++.+++|+ +++|+|+||||||||++.|++.+ |..| .|.+.
T Consensus 23 ~~Ld~i~~~l~~G~---~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 23 TGINDKTLGARGGE---VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp TTHHHHHCSBCTTC---EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred HHHHHHhcCCCCCe---EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 46888899999999 99999999999999999999999 7766 45443
No 99
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.05 E-value=2e-10 Score=115.09 Aligned_cols=66 Identities=9% Similarity=-0.001 Sum_probs=43.1
Q ss_pred cchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHH--cCCCH-----HHHHHHHhceE--EEccCc
Q 012357 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP-----EEIIHQISETV--YPMYKA 224 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e--~G~TI-----~~vi~~i~d~V--~~m~~G 224 (465)
.|++.|++++... ....|.++++||||++||+....++..-+.+ +|.++ ...+..+||++ +.|.+|
T Consensus 225 ~q~v~ia~~l~~~-~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g 299 (322)
T 1e69_A 225 KALVGLALLFALM-EIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNG 299 (322)
T ss_dssp HHHHHHHHHHHHT-TTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSS
T ss_pred HHHHHHHHHHHHh-ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCC
Confidence 3899999998321 1135789999999999999976666544433 25554 11234567765 555554
No 100
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.93 E-value=4.4e-10 Score=127.53 Aligned_cols=147 Identities=7% Similarity=0.003 Sum_probs=90.8
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHH--------HhcC-CCeeEEEECCeecCccccccccCCCCCCc
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKV--------LNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L--------~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~ 119 (465)
...++++++|.+++|+ +++|+||||||||||+|++ .|.. |..+.. ++.+ + .++.
T Consensus 648 ~~~v~ndisl~~~~g~---i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-----------~~~~-d--~i~~ 710 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQM---FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-----------VSIV-D--CILA 710 (934)
T ss_dssp CCCCCEEEEEETTTBC---EEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-----------EECC-S--EEEE
T ss_pred ceeecccceeecCCCe---EEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-----------chHH-H--HHHH
Confidence 4468899999999999 9999999999999999999 4444 432211 1100 0 0000
Q ss_pred cchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHH----HH
Q 012357 120 YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLV----KR 195 (465)
Q Consensus 120 ~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~----rr 195 (465)
.....+++... ......++.-++..+-. ...|.+.++|||++|+|+... +.
T Consensus 711 ~ig~~d~l~~~----------------------lStf~~e~~~~a~il~~---a~~~sLlLLDEp~~GlD~~~~~~i~~~ 765 (934)
T 3thx_A 711 RVGAGDSQLKG----------------------VSTFMAEMLETASILRS---ATKDSLIIIDELGRGTSTYDGFGLAWA 765 (934)
T ss_dssp ECC-------------------------------CHHHHHHHHHHHHHHH---CCTTCEEEEESCSCSSCHHHHHHHHHH
T ss_pred hcCchhhHHHh----------------------HhhhHHHHHHHHHHHHh---ccCCcEEEEeCCCCCCCHHHHHHHHHH
Confidence 00011111000 00011123333333322 467899999999999999743 55
Q ss_pred HHHHHHHc-CCCH-----HHHHHHHhceEEEccCcEEEecCCcceEEe
Q 012357 196 VFRDIQRV-GQEP-----EEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (465)
Q Consensus 196 Ilrdl~e~-G~TI-----~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI 237 (465)
+++.+.++ |.++ ...+..+||++..+.+|++...+...++..
T Consensus 766 il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~ 813 (934)
T 3thx_A 766 ISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTM 813 (934)
T ss_dssp HHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEE
T ss_pred HHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEEE
Confidence 66777764 7776 223456899999999999988777777653
No 101
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.92 E-value=1.2e-10 Score=116.19 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=31.7
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc-C-CCeeEEEECCeecC----ccccccccCC
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF-M-PSIAVITMDNYNDS----SRIIDGNFDD 114 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl-l-P~sG~I~lDg~~~~----~~~ig~vfQ~ 114 (465)
+++++.|+.+.++++++|.+ +|+|+||||||||+++|.|. + |++| +.++|.+.. .+.+++++|.
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I---------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~ 71 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL---------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEE 71 (301)
T ss_dssp ----------------CEEE---------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC-
T ss_pred CCCcceECCEEEEcCCCEEE---------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecC
Confidence 46777888888999999876 99999999999999999997 6 8888 877776542 2346777777
Q ss_pred CCCCccchHHHHH
Q 012357 115 PRLTDYDTLLENI 127 (465)
Q Consensus 115 p~l~~~~tv~enL 127 (465)
.......++.++.
T Consensus 72 ~~~~~~ltv~Dt~ 84 (301)
T 2qnr_A 72 RGVKLRLTVVDTP 84 (301)
T ss_dssp --CCEEEEEEEEC
T ss_pred CCcccCcchhhhh
Confidence 6655555554443
No 102
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.91 E-value=3.6e-10 Score=119.81 Aligned_cols=77 Identities=12% Similarity=0.096 Sum_probs=66.4
Q ss_pred EeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------------ccccccccCCCCCC
Q 012357 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------SRIIDGNFDDPRLT 118 (465)
Q Consensus 53 L~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------------~~~ig~vfQ~p~l~ 118 (465)
.+++||.+.+|+ +++|+|+||||||||+++|+|++ |..|.|.++|.+.. ++.+++++|++.++
T Consensus 283 ~~~Isl~i~~Ge---VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPF---VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCe---EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 367889999999 99999999999999999999999 88999999876542 23578999999888
Q ss_pred ccchHHHHHHhhhc
Q 012357 119 DYDTLLENIRGLKE 132 (465)
Q Consensus 119 ~~~tv~enL~~l~~ 132 (465)
+..++.+++.+...
T Consensus 360 p~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 360 SASVIFDAIQAAKA 373 (503)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999988653
No 103
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.91 E-value=1.8e-10 Score=117.75 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=72.6
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CC-eeEEEECCeecCccccccccCCCCCCccchHHHHHHhhhccccc
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV 136 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~-sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~~ 136 (465)
...+|+ +++|+||||||||||+++|+|++ |+ .|.|...+.+. .+...+...
T Consensus 119 ~~~~~g---~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-----e~~~~~~~~------------------- 171 (356)
T 3jvv_A 119 SDVPRG---LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-----EFVHESKKC------------------- 171 (356)
T ss_dssp HHCSSE---EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-----CSCCCCSSS-------------------
T ss_pred HhCCCC---EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-----Hhhhhcccc-------------------
Confidence 567788 99999999999999999999999 65 46654322111 111110000
Q ss_pred cccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH------HHH
Q 012357 137 QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEI 210 (465)
Q Consensus 137 ~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI------~~v 210 (465)
..+.. ..+.... .-.-+|++++ ..+|.+.++|||+ |..... ++....+.|.++ .+.
T Consensus 172 ~v~q~------~~~~~~~---~~~~~La~aL-----~~~PdvillDEp~---d~e~~~-~~~~~~~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 172 LVNQR------EVHRDTL---GFSEALRSAL-----REDPDIILVGEMR---DLETIR-LALTAAETGHLVFGTLHTTSA 233 (356)
T ss_dssp EEEEE------EBTTTBS---CHHHHHHHHT-----TSCCSEEEESCCC---SHHHHH-HHHHHHHTTCEEEEEESCSSH
T ss_pred ceeee------eeccccC---CHHHHHHHHh-----hhCcCEEecCCCC---CHHHHH-HHHHHHhcCCEEEEEEccChH
Confidence 00000 0000000 0112788888 8999999999999 665543 344456678877 333
Q ss_pred HHHHhceEEEccCc
Q 012357 211 IHQISETVYPMYKA 224 (465)
Q Consensus 211 i~~i~d~V~~m~~G 224 (465)
+ ..|||++.|+.|
T Consensus 234 ~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 234 A-KTIDRVVDVFPA 246 (356)
T ss_dssp H-HHHHHHHHTSCH
T ss_pred H-HHHHHHhhhcCc
Confidence 4 567888777554
No 104
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.89 E-value=1.7e-10 Score=117.82 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=59.3
Q ss_pred EeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec-----Ccccccccc-CCCCC--CccchH
Q 012357 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSRIIDGNF-DDPRL--TDYDTL 123 (465)
Q Consensus 53 L~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~-----~~~~ig~vf-Q~p~l--~~~~tv 123 (465)
++++++.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... .++.+++++ |++.. +...|+
T Consensus 165 ~~~l~~~i~~G~---~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~ 241 (361)
T 2gza_A 165 MSFLRRAVQLER---VIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTA 241 (361)
T ss_dssp HHHHHHHHHTTC---CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCH
T ss_pred HHHHHHHHhcCC---EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCH
Confidence 399999999999 99999999999999999999999 8999999998532 234678898 77654 366789
Q ss_pred HHHHHhhh
Q 012357 124 LENIRGLK 131 (465)
Q Consensus 124 ~enL~~l~ 131 (465)
.++|....
T Consensus 242 ~~~i~~~l 249 (361)
T 2gza_A 242 ATLLRSCL 249 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998754
No 105
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.89 E-value=3.1e-10 Score=121.21 Aligned_cols=141 Identities=15% Similarity=0.086 Sum_probs=89.4
Q ss_pred eeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCCccchHHHHHHhhhcccc
Q 012357 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKA 135 (465)
Q Consensus 57 sL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~~ 135 (465)
+..+.+|+ +++|.|+||||||||++++++.. |. |. +.+.+.+|++. ..+..+...+ +..
T Consensus 275 ~g~i~~G~---i~~i~G~~GsGKSTLl~~l~g~~~~~-G~----------~vi~~~~ee~~----~~l~~~~~~~--g~~ 334 (525)
T 1tf7_A 275 GGGFFKDS---IILATGATGTGKTLLVSRFVENACAN-KE----------RAILFAYEESR----AQLLRNAYSW--GMD 334 (525)
T ss_dssp TSSEESSC---EEEEEECTTSSHHHHHHHHHHHHHTT-TC----------CEEEEESSSCH----HHHHHHHHTT--SCC
T ss_pred CCCCCCCc---EEEEEeCCCCCHHHHHHHHHHHHHhC-CC----------CEEEEEEeCCH----HHHHHHHHHc--CCC
Confidence 45889999 99999999999999999999998 64 32 11233444431 1222222111 000
Q ss_pred cccccc-ccccccccCcccccc---ccchhhhhHhHHhhhhccCcceeeeeeeecCccHH-----H---HHHHHHHHHHc
Q 012357 136 VQVPIY-DFKSSSRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD-----L---VKRVFRDIQRV 203 (465)
Q Consensus 136 ~~~p~~-d~~~~~~~~~~~~~l---~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~-----l---~rrIlrdl~e~ 203 (465)
...+ ..............+ ..|++++++++ ..+|.++++| |++++|.. . +.++++.+++.
T Consensus 335 --~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l-----~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~ 406 (525)
T 1tf7_A 335 --FEEMERQNLLKIVCAYPESAGLEDHLQIIKSEIN-----DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQE 406 (525)
T ss_dssp --HHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHH-----TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHH-----hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhC
Confidence 0000 000000000001111 24899999998 8999999999 99999987 4 34566777778
Q ss_pred CCCH------H----------HHHHHHhceEEEccCcE
Q 012357 204 GQEP------E----------EIIHQISETVYPMYKAF 225 (465)
Q Consensus 204 G~TI------~----------~vi~~i~d~V~~m~~G~ 225 (465)
|.|+ . ..+..+||+|++|++|.
T Consensus 407 g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 407 EITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp TCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred CCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8887 3 45678899999998886
No 106
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.88 E-value=8.9e-10 Score=111.35 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=58.4
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCc-----------cccc--cccCCCCCCccchHHHH
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-----------RIID--GNFDDPRLTDYDTLLEN 126 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~-----------~~ig--~vfQ~p~l~~~~tv~en 126 (465)
++|+ +++|+|||||||||++++|++++ |..|.|.++|.+..+ +.++ +++|.+.+++..++.++
T Consensus 127 ~~g~---vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPY---VIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCe---EEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 5677 99999999999999999999999 999999999987642 2334 78999999999999999
Q ss_pred HHhhh
Q 012357 127 IRGLK 131 (465)
Q Consensus 127 L~~l~ 131 (465)
+....
T Consensus 204 l~~~~ 208 (328)
T 3e70_C 204 IQHAK 208 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 107
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.86 E-value=3.1e-10 Score=126.39 Aligned_cols=122 Identities=13% Similarity=0.046 Sum_probs=79.0
Q ss_pred CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCeecCccccccccCCCCCCccchHHH
Q 012357 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLE 125 (465)
Q Consensus 48 g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~e 125 (465)
+...++++++|. |+ +++|+||||||||||+|+|+|+. +..|.+. +..+..+++++| ++...++.+
T Consensus 564 ~~~~vl~disl~---g~---i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----pa~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HE---LVLITGPNMAGKSTFLRQTALIALLAQVGSFV----PAEEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp TSCCCCEEEEES---SC---EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----SSSEEEECCCSE---EEEECCC--
T ss_pred CCceEeeeccCC---Cc---EEEEECCCCCChHHHHHHHHhhhhhcccCcee----ehhccceeeHHH---hhccCCHHH
Confidence 345688999998 89 99999999999999999999986 5666532 112345677665 445556666
Q ss_pred HHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeee---ecCccHHHH-HHHHHHHH
Q 012357 126 NIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV---TGGVHFDLV-KRVFRDIQ 201 (465)
Q Consensus 126 nL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEp---ts~LD~~l~-rrIlrdl~ 201 (465)
|+..... . ...+++-+++++ .....|.+.++||| |+++|.... +.+++.+.
T Consensus 631 ~l~~g~S-----------------~-----~~~e~~~la~il---~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~ 685 (765)
T 1ewq_A 631 DLAGGKS-----------------T-----FMVEMEEVALIL---KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALH 685 (765)
T ss_dssp ----CCS-----------------H-----HHHHHHHHHHHH---HHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhccc-----------------H-----HHHHHHHHHHHH---HhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHH
Confidence 6543210 0 011334444433 12568999999999 999998764 56776666
Q ss_pred HcCCCH
Q 012357 202 RVGQEP 207 (465)
Q Consensus 202 e~G~TI 207 (465)
+.|.++
T Consensus 686 ~~g~~v 691 (765)
T 1ewq_A 686 ERRAYT 691 (765)
T ss_dssp HHTCEE
T ss_pred hCCCEE
Confidence 666655
No 108
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.85 E-value=1.3e-11 Score=115.20 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=40.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-----ccccccccCCC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-----SRIIDGNFDDP 115 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~-----~~~ig~vfQ~p 115 (465)
+++|+||||||||||+++|+|+++++| |.++|++.. ++.+|+++|+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEEETTSSEEEEEEEET
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchhHhhhceEEEEEEec
Confidence 899999999999999999999987678 999987653 45678888875
No 109
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.84 E-value=2.5e-10 Score=119.08 Aligned_cols=154 Identities=10% Similarity=0.024 Sum_probs=82.8
Q ss_pred EeeeCcEEEEeeeeeEEecCccceE--EEEEcCCCCcHHHHHHHHHhcCCCeeE-EEECCeecCccccccccCCCCCCcc
Q 012357 44 SFEKGFFIVIRACQLLAQKNHGIIL--VGVAGPSGAGKTVFTEKVLNFMPSIAV-ITMDNYNDSSRIIDGNFDDPRLTDY 120 (465)
Q Consensus 44 s~~~g~~~aL~~VsL~i~~Ge~~~I--igIiGpSGSGKSTL~r~L~gllP~sG~-I~lDg~~~~~~~ig~vfQ~p~l~~~ 120 (465)
++.|+..+ ++++||++++|+ + +||+|+||||||||+++|+|+.- .|. +.-......++.+++++|++.+++.
T Consensus 22 ~~~y~~~~-L~~vsl~i~~Ge---i~~vaLvG~nGaGKSTLln~L~G~~l-~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 96 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVSQGF---CFNILCVGETGLGKSTLMDTLFNTKF-EGEPATHTQPGVQLQSNTYDLQESNVRLK 96 (427)
T ss_dssp CC-CC--C-HHHHHHSCC-CC---EEEEEEECSTTSSSHHHHHHHHTSCC--------CCSSCEEEEEEEEEEC--CEEE
T ss_pred EEEECCee-cCCCceEecCCC---eeEEEEECCCCCCHHHHHHHHhCccc-cCCcCCCCCccceEeeEEEEeecCccccc
Confidence 55666666 999999999999 9 99999999999999999999851 111 1000000113457888888776555
Q ss_pred chHHHHHHhhhcccc--cccc-------ccc-----c-c--------cccc----cC---ccccccccchhhhhHhHHhh
Q 012357 121 DTLLENIRGLKEGKA--VQVP-------IYD-----F-K--------SSSR----IG---YRTLEVPSSRIVIIEGIYAL 170 (465)
Q Consensus 121 ~tv~enL~~l~~~~~--~~~p-------~~d-----~-~--------~~~~----~~---~~~~~l~~qRVlIaegl~aL 170 (465)
.|+.+++.+...... ...+ .+. . . ...+ +. .....+....+-|++.+
T Consensus 97 ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L--- 173 (427)
T 2qag_B 97 LTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKL--- 173 (427)
T ss_dssp EEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHT---
T ss_pred cchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHH---
Confidence 555554433211000 0000 000 0 0 0000 00 00011223456677777
Q ss_pred hhccCcceeeeeeeecCccHHHHHHHHHH----HHHcCCCH
Q 012357 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRD----IQRVGQEP 207 (465)
Q Consensus 171 ~d~~~p~LdllDEpts~LD~~l~rrIlrd----l~e~G~TI 207 (465)
.....+.+.|+++..+.+..+..+.+. +...|.++
T Consensus 174 --~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I 212 (427)
T 2qag_B 174 --DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQI 212 (427)
T ss_dssp --CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCC
T ss_pred --hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcE
Confidence 567789999999999987755444433 44456655
No 110
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.82 E-value=1.1e-10 Score=118.17 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=61.8
Q ss_pred eeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------ccccc
Q 012357 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (465)
Q Consensus 42 ~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----------~~~ig 109 (465)
++++.|+...+++++++++.+|+ +++|+|+||||||||+++|+|++ |+.|.|.+.+.+.. +..++
T Consensus 34 ~~~~~~~~~~~l~~i~~~~~~g~---~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~ 110 (337)
T 2qm8_A 34 RADHRAAVRDLIDAVLPQTGRAI---RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA 110 (337)
T ss_dssp SHHHHHHHHHHHHHHGGGCCCSE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGST
T ss_pred CcccccChHHHHHhCCcccCCCe---EEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhhe
Confidence 34445555567888899999999 99999999999999999999999 88999999887642 23578
Q ss_pred cccCCCCCCc
Q 012357 110 GNFDDPRLTD 119 (465)
Q Consensus 110 ~vfQ~p~l~~ 119 (465)
++||+++++.
T Consensus 111 ~v~q~~~~~~ 120 (337)
T 2qm8_A 111 RLAIDRNAFI 120 (337)
T ss_dssp TGGGCTTEEE
T ss_pred eeccCccccc
Confidence 8999987765
No 111
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.80 E-value=8.7e-10 Score=123.43 Aligned_cols=150 Identities=10% Similarity=0.040 Sum_probs=89.7
Q ss_pred CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCeecC--ccccccccCCCCCCccchH
Q 012357 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDS--SRIIDGNFDDPRLTDYDTL 123 (465)
Q Consensus 48 g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--P~sG~I~lDg~~~~--~~~ig~vfQ~p~l~~~~tv 123 (465)
+...++++++|. ++|+ +++|+||||||||||+|+|+|+. ...| ...+ ...+++++| ++...++
T Consensus 593 ~~~~vlndisl~-~~g~---i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRR---MLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPAQKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp SSCCCCEEEEEC-SSSC---EEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSSSEEEECCCCE---EEEEEC-
T ss_pred CCceeeeccccc-CCCc---EEEEECCCCCChHHHHHHHHHHHHHHhcC------cccchhcccceeHHH---HHhhCCH
Confidence 445689999999 8899 99999999999999999999985 2332 1111 223555543 3444555
Q ss_pred HHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHH---H-HHHHHHH
Q 012357 124 LENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD---L-VKRVFRD 199 (465)
Q Consensus 124 ~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~---l-~rrIlrd 199 (465)
.+++..... .+ .....++..+-. ....|.+.++|||++|+|+. . .+.+++.
T Consensus 660 ~d~l~~~~s-------tf-------------~~e~~~~~~il~-----~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~ 714 (800)
T 1wb9_A 660 ADDLASGRS-------TF-------------MVEMTETANILH-----NATEYSLVLMDEIGRGTSTYDGLSLAWACAEN 714 (800)
T ss_dssp -----------------C-------------HHHHHHHHHHHH-----HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHH
T ss_pred HHHHHhhhh-------hh-------------hHHHHHHHHHHH-----hccCCCEEEEECCCCCCChhHHHHHHHHHHHH
Confidence 555533210 00 000112221111 26789999999997776653 3 3677888
Q ss_pred HHHc-CCCH------HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 200 IQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 200 l~e~-G~TI------~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
+.++ |.++ .+ +..+||++..+.++++.......+++
T Consensus 715 l~~~~g~~vl~~TH~~e-l~~l~d~~~~v~n~~~~~~~~~~~l~ 757 (800)
T 1wb9_A 715 LANKIKALTLFATHYFE-LTQLPEKMEGVANVHLDALEHGDTIA 757 (800)
T ss_dssp HHHTTCCEEEEECSCGG-GGGHHHHSTTEEEEEEEEEEETTEEE
T ss_pred HHhccCCeEEEEeCCHH-HHHHhhhhhceEEEEEEEEEcCCcEE
Confidence 8874 7766 33 33578887777778776554444443
No 112
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.79 E-value=7.7e-10 Score=102.09 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=45.7
Q ss_pred eeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------ccccccccCCCCCCccchHHHH
Q 012357 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLEN 126 (465)
Q Consensus 57 sL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~-------~~~ig~vfQ~p~l~~~~tv~en 126 (465)
|+.+.+|+ ++||+||||||||||+++|+++.| .+.+++.+.. ...++|+||++..++..++.++
T Consensus 1 s~~m~~g~---ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKAN---LFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCC---EEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCc---EEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 45678899 999999999999999999999986 3566665432 2357889998766655554433
No 113
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.79 E-value=2.1e-10 Score=111.12 Aligned_cols=170 Identities=16% Similarity=0.180 Sum_probs=82.7
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHH---hcC-CCeeEEE--------ECCeecC--------ccccccccCCCCC---
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVL---NFM-PSIAVIT--------MDNYNDS--------SRIIDGNFDDPRL--- 117 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~---gll-P~sG~I~--------lDg~~~~--------~~~ig~vfQ~p~l--- 117 (465)
.+|. +++|+|||||||||++++|+ |+. +++|.+. .+|.+.. ++.++++||.+..
T Consensus 25 ~~g~---~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (252)
T 4e22_A 25 AIAP---VITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQ 101 (252)
T ss_dssp TTSC---EEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEE
T ss_pred CCCc---EEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCce
Confidence 6788 99999999999999999999 877 7888887 7776542 1345666654321
Q ss_pred --CccchHHHHHHhhhcccc----ccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHH
Q 012357 118 --TDYDTLLENIRGLKEGKA----VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD 191 (465)
Q Consensus 118 --~~~~tv~enL~~l~~~~~----~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~ 191 (465)
++..++.+++....-... ...+... +........+....-++++|-.+ ...+.|..++.++.+++.+.+
T Consensus 102 ~~l~~~~v~~~i~~~~v~~~~s~~~~~~~vr----~~l~~~~~~~a~~~~~V~~gr~~-~~~v~~~~~~~ifl~A~~e~r 176 (252)
T 4e22_A 102 VILEGEDVSNEIRTETVGNTASQAAAFPRVR----EALLRRQRAFREAPGLIADGRDM-GTIVFPDAPVKIFLDASSQER 176 (252)
T ss_dssp EEETTEECTTGGGSHHHHHHHHHHTTSHHHH----HHHHHHHHTTCCSSCEEEEESSC-CCCCSTTCSEEEEEECCHHHH
T ss_pred EEECCeehhHHHHHHHHHHHHHHhcccHHHH----HHHHHHHHHHhhCCCEEEEecee-ceeecCCCCEEEEEECCHHHH
Confidence 111222222111000000 0000000 00000000011111122222100 002345567899999988876
Q ss_pred HHHHHHHHHHHc--CCCHHHHHHHHhceEEEccCcEEEecCCcce-EEeeC
Q 012357 192 LVKRVFRDIQRV--GQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKIIN 239 (465)
Q Consensus 192 l~rrIlrdl~e~--G~TI~~vi~~i~d~V~~m~~G~I~~~g~~aD-IiI~~ 239 (465)
..|+ .+++..+ +.+..++..++..+........+.|....+| ++|.+
T Consensus 177 ~~R~-~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idt 226 (252)
T 4e22_A 177 AHRR-MLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDS 226 (252)
T ss_dssp HHHH-HHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEEC
T ss_pred HHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEEC
Confidence 6554 4444444 5566777888877766666666667677777 66654
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.75 E-value=5.1e-10 Score=116.69 Aligned_cols=135 Identities=10% Similarity=-0.096 Sum_probs=70.0
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCee--EEEECCee-cCccccccccCCCC
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA--VITMDNYN-DSSRIIDGNFDDPR 116 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG--~I~lDg~~-~~~~~ig~vfQ~p~ 116 (465)
+++++.|+...++++++|.+ +|+|+||||||||+++|+|.. |..| .+.+++.. .....+++++|.+.
T Consensus 15 ~~l~~~y~~~~vl~~vsf~I---------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~ 85 (418)
T 2qag_C 15 ANLPNQVYRKSVKRGFEFTL---------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG 85 (418)
T ss_dssp CCCCCCTTTTTCC-CCCEEE---------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-----
T ss_pred EecceeECCEEEecCCCEEE---------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCC
Confidence 45666677677888888875 999999999999999999997 5444 11122111 11235788888877
Q ss_pred CCccchHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhhhccCcc---eeeeeeee-cCccHHH
Q 012357 117 LTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL---IDLRVSVT-GGVHFDL 192 (465)
Q Consensus 117 l~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~---LdllDEpt-s~LD~~l 192 (465)
.+...++.+++.+....... ..+. ...+........+..+++.|++++ ..+|. ++++|+|| .++|+..
T Consensus 86 ~~~~Ltv~Dt~g~~~~~~~~--~~~~-~i~~~i~~~~~~~l~qr~~IaRal-----~~d~~~~vlL~ldePt~~~L~~~d 157 (418)
T 2qag_C 86 VQLLLTIVDTPGFGDAVDNS--NCWQ-PVIDYIDSKFEDYLNAESRVNRRQ-----MPDNRVQCCLYFIAPSGHGLKPLD 157 (418)
T ss_dssp -CEEEEEEECC-------------CH-HHHHHHHHHHHHHTTTSCC-CCCC-----CCCC-CCEEEEECCC-CCSCCHHH
T ss_pred cccceeeeechhhhhhccch--hhHH-HHHHHHHHHHHHHHHHHHHHHHHh-----ccCCCeeEEEEEecCcccCCCHHH
Confidence 76666666665443210000 0000 000000000011234677788886 55666 89999999 6898865
No 115
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.74 E-value=1.9e-09 Score=114.19 Aligned_cols=51 Identities=16% Similarity=0.291 Sum_probs=47.3
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS 104 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~ 104 (465)
..+++++||++++ + ++||+||||||||||+++|+|++ |++|.|.++|.++.
T Consensus 17 ~~~l~~vsl~i~~-e---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-L---VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-S---EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-c---eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 4578999999999 9 99999999999999999999999 99999999998654
No 116
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.74 E-value=1.3e-09 Score=110.95 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=76.5
Q ss_pred EEeee-eeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC--C-Ce----eE-EEECCeecC-ccccccccCCCCCCccc
Q 012357 52 VIRAC-QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--P-SI----AV-ITMDNYNDS-SRIIDGNFDDPRLTDYD 121 (465)
Q Consensus 52 aL~~V-sL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--P-~s----G~-I~lDg~~~~-~~~ig~vfQ~p~l~~~~ 121 (465)
.|+.+ .+.+++|+ +++|+||||||||||++.+++.. | +. |. |.+|+.... ++++++++|.+.++..
T Consensus 119 ~LD~lL~ggi~~G~---i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQA---ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSE---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCe---EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHH-
Confidence 34444 57889999 99999999999999999999987 3 33 56 899987643 4568888888765543
Q ss_pred hHHHHHHhhhccccccccccccccccccCccccccccchhhhhHhHHhhh--hccCcceeeeeeeecCccHH
Q 012357 122 TLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS--EKLRPLIDLRVSVTGGVHFD 191 (465)
Q Consensus 122 tv~enL~~l~~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~--d~~~p~LdllDEpts~LD~~ 191 (465)
++.+|+.+... +. .. ...+.+.+++.++.-+ ...+|.+.++|+|++.+|+.
T Consensus 195 ~v~~ni~~~~~--------~~------~~-----~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 195 EVLKHIYVARA--------FN------SN-----HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp HHGGGEEEEEC--------CS------HH-----HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred HHhhCEEEEec--------CC------hH-----HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence 55544422110 00 00 0112344444442100 01689999999999999885
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.74 E-value=3.9e-10 Score=105.30 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=37.8
Q ss_pred EEEeeeee-EEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe
Q 012357 51 IVIRACQL-LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (465)
Q Consensus 51 ~aL~~VsL-~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~ 101 (465)
..|+++.. .+++|+ +++|+||||||||||++.|++.. +..|.+.+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~---~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGF---FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp HHHHGGGTTSEETTC---EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred hHHHHHhcCCCcCCC---EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34556665 679999 99999999999999999999887 65555555443
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.73 E-value=1.3e-09 Score=111.84 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=66.9
Q ss_pred EecCccceEEEEEcCCCCcHHHHHHHHHhcC-CC-eeEEEECCeecC---ccccccccCCCCCCccchHHHHHHhhhccc
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNYNDS---SRIIDGNFDDPRLTDYDTLLENIRGLKEGK 134 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~-sG~I~lDg~~~~---~~~ig~vfQ~p~l~~~~tv~enL~~l~~~~ 134 (465)
+++|+ +++|+||||||||||+++|++++ |+ +|.|.+.+.+.. +..+++++|..
T Consensus 133 ~~~g~---~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------------- 190 (372)
T 2ewv_A 133 HRKMG---LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQRE------------------- 190 (372)
T ss_dssp TSSSE---EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEE-------------------
T ss_pred hcCCC---EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeee-------------------
Confidence 67899 99999999999999999999999 66 799876553321 12233333310
Q ss_pred cccccccccccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCH
Q 012357 135 AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (465)
Q Consensus 135 ~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI 207 (465)
++.... .-+..|++++ ..+|.+.++|||+ |+..+...++.. ..|.++
T Consensus 191 --------------~g~~~~---~~~~~l~~~L-----~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~v 237 (372)
T 2ewv_A 191 --------------VGEDTK---SFADALRAAL-----REDPDVIFVGEMR---DLETVETALRAA-ETGHLV 237 (372)
T ss_dssp --------------BTTTBS---CSHHHHHHHT-----TSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEE
T ss_pred --------------cCCCHH---HHHHHHHHHh-----hhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEE
Confidence 000000 1146777888 7799999999999 666666555543 346554
No 119
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.72 E-value=2.6e-09 Score=108.69 Aligned_cols=174 Identities=12% Similarity=0.054 Sum_probs=103.2
Q ss_pred eeeEeeeC-cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------------
Q 012357 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------- 104 (465)
Q Consensus 41 ~~ls~~~g-~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-------------- 104 (465)
+++++.|+ +..|++++ |.+.+|+ ++||+||||||||||+++|+|+. |++|.|.+.|....
T Consensus 49 ~~l~~~~~tg~~ald~l-l~i~~Gq---~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~ 124 (347)
T 2obl_A 49 QVIDQPFILGVRAIDGL-LTCGIGQ---RIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTL 124 (347)
T ss_dssp CCCCSEECCSCHHHHHH-SCEETTC---EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHH
T ss_pred cccceecCCCCEEEEee-eeecCCC---EEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhh
Confidence 45666666 57799999 9999999 99999999999999999999999 99999999886411
Q ss_pred ccccccccCCCCC-CccchHHHHHHhhhcccccccccccccccccc-CccccccccchhhhhHhHHhhhhccCcceeeee
Q 012357 105 SRIIDGNFDDPRL-TDYDTLLENIRGLKEGKAVQVPIYDFKSSSRI-GYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRV 182 (465)
Q Consensus 105 ~~~ig~vfQ~p~l-~~~~tv~enL~~l~~~~~~~~p~~d~~~~~~~-~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllD 182 (465)
++.+.+.+|.... ....+...+...+..... . ...+ ..... .........+++.++ + .+|.+
T Consensus 125 ~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~-~-~~~~--vl~~ld~~~~lS~g~r~v~la--l------~~p~~---- 188 (347)
T 2obl_A 125 SKCVLVVTTSDRPALERMKAAFTATTIAEYFR-D-QGKN--VLLMMDSVTRYARAARDVGLA--S------GEPDV---- 188 (347)
T ss_dssp TTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH-T-TTCE--EEEEEETHHHHHHHHHHHHHH--T------TCCCC----
T ss_pred hceEEEEECCCCCHHHHHHHHHHHHHHHHHHH-h-cccc--HHHHHhhHHHHHHHHHHHHHH--c------CCCCc----
Confidence 1123344443210 011111111111110000 0 0000 00000 001111122566666 1 23333
Q ss_pred eeecCccHHHHHHHHHHH---HH--cCC-----CH----HHHHHHHhceEEEccCcEEEecCCcceEE
Q 012357 183 SVTGGVHFDLVKRVFRDI---QR--VGQ-----EP----EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (465)
Q Consensus 183 Epts~LD~~l~rrIlrdl---~e--~G~-----TI----~~vi~~i~d~V~~m~~G~I~~~g~~aDIi 236 (465)
++|+|+....++.+-+ .+ .|. |+ .+.-+.+||+++.+.+|+|+.+++.+++.
T Consensus 189 --t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~~i~d~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 189 --RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp --BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCCHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred --ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCChhhhheEEeeCcEEEEeCCHHHcC
Confidence 8999998766555443 32 355 55 11127889999999999999999888763
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.70 E-value=2.6e-09 Score=101.83 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=46.7
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C--CeeEEEECCeecC---ccccccccCCCCCCccch
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS---SRIIDGNFDDPRLTDYDT 122 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P--~sG~I~lDg~~~~---~~~ig~vfQ~p~l~~~~t 122 (465)
+.++|+ +++|+||||||||||+++|+|+. | ..|.|.+.+.... +..++|+||++..|+.++
T Consensus 12 ~~~~G~---ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~ 78 (219)
T 1s96_A 12 HMAQGT---LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 78 (219)
T ss_dssp ---CCC---EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred cCCCCc---EEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHH
Confidence 458899 99999999999999999999999 4 5788888876542 245889999876554433
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.70 E-value=5.2e-09 Score=95.55 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=50.6
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-----ccccccccCCCCCCccchHHHHHHhh
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-----SRIIDGNFDDPRLTDYDTLLENIRGL 130 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~-----~~~ig~vfQ~p~l~~~~tv~enL~~l 130 (465)
.+++|+ +++|+||||||||||+++|++. |+.|.|.+++.+.. ...+++++|++. +..++.+++...
T Consensus 5 ~i~~g~---~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~ 75 (191)
T 1zp6_A 5 DDLGGN---ILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADV 75 (191)
T ss_dssp -CCTTE---EEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHH
T ss_pred CCCCCe---EEEEECCCCCCHHHHHHHHHhc-cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHH
Confidence 357888 9999999999999999999998 68899999986532 123567777543 456788887653
No 122
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.66 E-value=2.8e-09 Score=105.99 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=40.2
Q ss_pred eEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEE---CCeecCc-------cccccccCCCCCC
Q 012357 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-------RIIDGNFDDPRLT 118 (465)
Q Consensus 58 L~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~l---Dg~~~~~-------~~ig~vfQ~p~l~ 118 (465)
+.+..|+ +++|+||||||||||+++|+|+. |++|.|.+ +|.+.++ +.++++||.|...
T Consensus 164 f~~l~ge---iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 164 KEYLKGK---ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA 232 (301)
T ss_dssp HHHHSSS---EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred HHHhcCC---eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence 3455788 99999999999999999999999 99999999 8877542 2579999998753
No 123
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.65 E-value=1.5e-09 Score=104.08 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=49.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH---hcC-CCeeEEEECCeecC---ccccccccCCCCCCccchHHHHHHh
Q 012357 68 LVGVAGPSGAGKTVFTEKVL---NFM-PSIAVITMDNYNDS---SRIIDGNFDDPRLTDYDTLLENIRG 129 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~---gll-P~sG~I~lDg~~~~---~~~ig~vfQ~p~l~~~~tv~enL~~ 129 (465)
+++|+||||||||||+++|+ |+. |+.|.|..++.... ...+..++|+..+++..++.+++..
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999 988 78888877765321 1234556777777888888888875
No 124
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.61 E-value=7.6e-10 Score=112.71 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=38.1
Q ss_pred EeeeeeEEec--CccceEEEEEcCCCCcHHHHHHHHHhcC-CCe----eEEEE
Q 012357 53 IRACQLLAQK--NHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI----AVITM 98 (465)
Q Consensus 53 L~~VsL~i~~--Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~s----G~I~l 98 (465)
.+.|++.+.+ |+ .++|+|+||||||||+++|+|++ |++ |.+.+
T Consensus 158 ~~~v~~~v~~~lg~---k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 158 WKFIPKEARPFFAK---TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp GGGSCTTTGGGTCE---EEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred hhhCCHHHHHhhhC---eEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 3568899999 99 99999999999999999999999 877 66655
No 125
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.58 E-value=4.5e-09 Score=96.96 Aligned_cols=52 Identities=23% Similarity=0.174 Sum_probs=32.9
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEE
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITM 98 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------P~sG~I~l 98 (465)
+++++.|+ ..++++ |.+.+|. .++|+|+||||||||++.|+|.. |+.|.+..
T Consensus 7 ~~~~~~~~-~~~l~~--~~~~~~~---~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 7 QQTHFVMS-APDIRH--LPSDTGI---EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp ----CEEE-ESSGGG--SSCSCSE---EEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred hhhhheee-cCCHhH--CCCCCCc---EEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 44555554 245555 6778888 99999999999999999999875 45565543
No 126
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.56 E-value=4.4e-09 Score=109.64 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=60.1
Q ss_pred eeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------ccccc
Q 012357 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (465)
Q Consensus 42 ~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~-----------~~~ig 109 (465)
++++.++...+|+++ + ..+|+ +++|+||||||||||+++|++++ |+.|.|.+.+.++. ...++
T Consensus 148 ~Lg~~~~~~~~L~~l-~-~~~gg---ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g 222 (418)
T 1p9r_A 148 SLGMTAHNHDNFRRL-I-KRPHG---IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVD 222 (418)
T ss_dssp GSCCCHHHHHHHHHH-H-TSSSE---EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGT
T ss_pred HcCCCHHHHHHHHHH-H-HhcCC---eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccC
Confidence 344444444566666 4 37788 99999999999999999999999 88899988776532 12345
Q ss_pred ccc---------CCCCCC------ccchHHHHHHhhh
Q 012357 110 GNF---------DDPRLT------DYDTLLENIRGLK 131 (465)
Q Consensus 110 ~vf---------Q~p~l~------~~~tv~enL~~l~ 131 (465)
+.| |+|+.+ +.+|+.+++....
T Consensus 223 ~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~ 259 (418)
T 1p9r_A 223 MTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASL 259 (418)
T ss_dssp BCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHH
Confidence 555 777653 2357777776644
No 127
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.54 E-value=1.6e-08 Score=114.55 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=35.4
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
...++++|+|.+++|+ +++|+||||||||||+|+++++.
T Consensus 659 ~~~V~ndvsl~~~~g~---i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 659 DQYVPNNTDLSEDSER---VMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp SSSCCEEEEECTTSCC---EEEEESCCCHHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCe---EEEEECCCCCchHHHHHHHHHHH
Confidence 4568899999999999 99999999999999999998754
No 128
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.53 E-value=3.2e-08 Score=98.46 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=46.3
Q ss_pred EecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEE---CCeecCc-------cccccccCCCCCC-----ccchH
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-------RIIDGNFDDPRLT-----DYDTL 123 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~l---Dg~~~~~-------~~ig~vfQ~p~l~-----~~~tv 123 (465)
+..|+ +++|+||||||||||+++|. +. |.+|.|.+ +|.+.++ +.+|+++|.|.+. +..|+
T Consensus 162 ~l~G~---i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGF---ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTC---EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCc---EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 45688 99999999999999999999 88 89999999 8887642 2579999998653 45566
Q ss_pred HHHH
Q 012357 124 LENI 127 (465)
Q Consensus 124 ~enL 127 (465)
+++
T Consensus 238 -e~l 240 (302)
T 2yv5_A 238 -REV 240 (302)
T ss_dssp -GGG
T ss_pred -HHH
Confidence 666
No 129
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.51 E-value=2e-08 Score=100.57 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=42.2
Q ss_pred eEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEE---CCeecCc------cccccccCCCCCCc----cchH
Q 012357 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS------RIIDGNFDDPRLTD----YDTL 123 (465)
Q Consensus 58 L~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~l---Dg~~~~~------~~ig~vfQ~p~l~~----~~tv 123 (465)
+.+.+|+ +++|+|+||||||||+++|.|.. |.+|.|.+ +|.+.++ ...++++|.|.+.. ..++
T Consensus 168 ~~~~~G~---~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDK---TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTS---EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCC---EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 6677899 99999999999999999999999 89999998 7776542 12689999987654 4567
Q ss_pred HHHHH
Q 012357 124 LENIR 128 (465)
Q Consensus 124 ~enL~ 128 (465)
+++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 7774
No 130
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.47 E-value=9e-09 Score=97.57 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=22.8
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHH-hcCC
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL-NFMP 91 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~-gllP 91 (465)
.+-.+++||++++|+ ++||+||||||||||+++|+ +++|
T Consensus 14 ~~~~~~~sl~v~~G~---ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGV---ILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCC---EEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCC---EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 346789999999999 99999999999999999999 9984
No 131
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.44 E-value=1.3e-08 Score=105.18 Aligned_cols=151 Identities=15% Similarity=0.148 Sum_probs=87.7
Q ss_pred EecCccceEEEEEcCCCCcHHHHHHHHHh------------cC-CCeeEEEECCeec--------Ccccc---ccccCCC
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLN------------FM-PSIAVITMDNYND--------SSRII---DGNFDDP 115 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~g------------ll-P~sG~I~lDg~~~--------~~~~i---g~vfQ~p 115 (465)
+.+|. .+||+|+||||||||+++|+| .. |+.|.+.+.|... .++.+ ..++|.|
T Consensus 17 v~~g~---~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~p 93 (392)
T 1ni3_A 17 PGNNL---KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIA 93 (392)
T ss_dssp SSSCC---EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred ccCCC---EEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecc
Confidence 36677 999999999999999999999 45 7899999987321 12222 2455666
Q ss_pred CCCccchHHHHH--Hhhh--ccccccccccccccccccCccccccccchhhhhHhHHhhhhccCc--ceeeeeeeecCcc
Q 012357 116 RLTDYDTLLENI--RGLK--EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP--LIDLRVSVTGGVH 189 (465)
Q Consensus 116 ~l~~~~tv~enL--~~l~--~~~~~~~p~~d~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p--~LdllDEpts~LD 189 (465)
.++...+..+++ .++. .....-....+.. . ...+..+.+ ..+| .++++||++...|
T Consensus 94 Gl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~-----~-------d~~i~~v~~------~~dP~~di~ildeel~~~D 155 (392)
T 1ni3_A 94 GLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAF-----D-------DAEIIHVEG------DVDPIRDLSIIVDELLIKD 155 (392)
T ss_dssp GGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECC-----C-------TTCSSCCSS------SSCHHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHhcc-----c-------cceeeeecc------ccCcchhhhhchhhhHHHH
Confidence 555443322222 1111 0000000001100 0 011111111 2356 7888999999999
Q ss_pred HHHHHHHHHHHHH----cCCCH----HHHHHHHhceEE-EccCc-EEEecCC
Q 012357 190 FDLVKRVFRDIQR----VGQEP----EEIIHQISETVY-PMYKA-FIEPDLQ 231 (465)
Q Consensus 190 ~~l~rrIlrdl~e----~G~TI----~~vi~~i~d~V~-~m~~G-~I~~~g~ 231 (465)
+..+.+.+..+.. .|.|+ ...+..+|+++. .+.+| .++..+.
T Consensus 156 ~~~~~k~~~~l~~~~~~~g~ti~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~ 207 (392)
T 1ni3_A 156 AEFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTETKQPIRKGD 207 (392)
T ss_dssp HHHHHHHHHHHHHTTCCSSCSSSHHHHHHHHHHHHHHHHHHHTTCSCGGGSC
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhccCCceeecCC
Confidence 9876655544332 35554 556788899988 88888 6654443
No 132
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.43 E-value=1.3e-07 Score=89.04 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=34.2
Q ss_pred EecCccceEEEEEcCCCCcHHHHHHHHHhc--C-C-----CeeEEEECCee
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-P-----SIAVITMDNYN 102 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl--l-P-----~sG~I~lDg~~ 102 (465)
+++|+ +++|+||||||||||++.|++. . | ..|.+.+++..
T Consensus 21 i~~G~---~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 21 IETGS---ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EETTS---EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCe---EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 68999 9999999999999999999994 4 3 56788887754
No 133
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.43 E-value=3.9e-08 Score=91.15 Aligned_cols=66 Identities=18% Similarity=0.073 Sum_probs=48.6
Q ss_pred eEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCc------cccccccCCCCCCccchHHHHHHh
Q 012357 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRG 129 (465)
Q Consensus 58 L~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~~------~~ig~vfQ~p~l~~~~tv~enL~~ 129 (465)
+..++|+ +++|+|+||||||||+++|++.+ |.+.+|+..+.. ...+++||++..++..++.+++..
T Consensus 24 m~~~~g~---~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 24 MTGEPTR---HVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp ----CCC---EEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCc---EEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 4456788 99999999999999999999987 778888765432 246888888766666666666544
No 134
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.42 E-value=1.5e-07 Score=94.86 Aligned_cols=58 Identities=7% Similarity=-0.007 Sum_probs=40.0
Q ss_pred hhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHH---HHHHcCCCH-----HHHHHHHhceEEEcc
Q 012357 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFR---DIQRVGQEP-----EEIIHQISETVYPMY 222 (465)
Q Consensus 160 RVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlr---dl~e~G~TI-----~~vi~~i~d~V~~m~ 222 (465)
++++++++ ..+|.++++||||++||+.....+.. ++...|.|+ ...+..+||+++.+.
T Consensus 262 ~l~~a~~l-----~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 262 RLAMSLYL-----AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327 (339)
T ss_dssp HHHHHHHT-----TTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred HHHHHHHh-----cCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEE
Confidence 44555555 67899999999999999987666554 444456666 122456778877764
No 135
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.40 E-value=1.3e-07 Score=87.80 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=30.8
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg 100 (465)
.+++|+ +++|+|+||||||||++.+++ .+..+.+.++.
T Consensus 16 gi~~G~---~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~ 53 (220)
T 2cvh_A 16 GFAPGV---LTQVYGPYASGKTTLALQTGL-LSGKKVAYVDT 53 (220)
T ss_dssp SBCTTS---EEEEECSTTSSHHHHHHHHHH-HHCSEEEEEES
T ss_pred CCcCCE---EEEEECCCCCCHHHHHHHHHH-HcCCcEEEEEC
Confidence 468999 999999999999999999998 43345555543
No 136
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.38 E-value=6.9e-08 Score=88.26 Aligned_cols=61 Identities=15% Similarity=0.043 Sum_probs=45.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCc-cccccccCCCCCCccchHHHHHHhh
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-RIIDGNFDDPRLTDYDTLLENIRGL 130 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~~-~~ig~vfQ~p~l~~~~tv~enL~~l 130 (465)
+++|+||||||||||+++|++ |..|.+.+++..... ...++++|........++.+++...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~--~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA--QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL 65 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc--ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH
Confidence 899999999999999999988 456888888865432 2456666655444456777777653
No 137
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=98.37 E-value=1.1e-06 Score=81.21 Aligned_cols=141 Identities=23% Similarity=0.380 Sum_probs=104.3
Q ss_pred cHHHHHHHhccccccc--ccceeeeccCCCCCCchhhhhhhhhc--CCCceEEEEEeeecCCCCeEeeeeeeeeeee-e-
Q 012357 261 TVDEIKAVMSKEHTET--TEETYDIYLLPPGEDPDACQSYLRMR--NRDGKYNLMFEEWVTDSPFIISPRITFEVSV-R- 334 (465)
Q Consensus 261 ~~~~i~~~l~~~~~~~--~~~~~~i~~~p~~~~~~~~~~~i~~~--~~~~~~~l~~~~~~~~~p~i~~~~~~f~v~~-~- 334 (465)
..+.+...|....... .....|.|+-.|.. .++|.| +.++.+.|+|.++. +++.-.+...++.|.- .
T Consensus 18 d~~~~~~~L~~lg~~~~~~~~Q~d~Yfd~p~~------~~LRIR~~~~~~~~~lT~K~p~-~g~~k~~~E~e~~v~d~~~ 90 (179)
T 1yem_A 18 KLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRP------KLLRIRGVHNLKKYYLTFKEIL-DENNEEFYEVEFEIGDFEK 90 (179)
T ss_dssp CHHHHHHHHHTTCCEEEEEEEEEEEEECCCTT------EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEESCHHH
T ss_pred CHHHHHHHHHhcCCccCcceEEEEEEEcCCCC------CEEEEEEEcCCCeEEEEEeccC-CCCccceeEEEEEeCCHHH
Confidence 4556666666543221 22345788866643 688888 67889999999998 7775333333333311 0
Q ss_pred EeccccccCcEEEEEEEeccceeecCcEEEEehhhhhcCcceEEEeccc------hhHHHHHhhhhcCccC-ccchhHHH
Q 012357 335 LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRD------RLYVKYVGEQLGLDGS-YVPRTYIE 407 (465)
Q Consensus 335 il~gl~~~g~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~-~~~~~~~~ 407 (465)
+..-|..|||.+...+...-..|.-+.+.|.+|+.+.++ .|+.|.... +..+.+++.+|||+.. .+++||+|
T Consensus 91 ~~~iL~~LG~~~~~~i~K~R~~~~~~~~~i~lD~~~~lG-~f~EIE~~~~~~e~~~~~~~~ll~~LGi~~~~~~~~sY~e 169 (179)
T 1yem_A 91 AVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIG-DFVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLE 169 (179)
T ss_dssp HHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCTTT
T ss_pred HHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEecCCCC-CEEEEEEecCChHHHHHHHHHHHHHcCCChhhceehhHHH
Confidence 111135779999999999999999999999999999999 899998766 7789999999999988 89999998
Q ss_pred HH
Q 012357 408 QI 409 (465)
Q Consensus 408 ~~ 409 (465)
++
T Consensus 170 Ll 171 (179)
T 1yem_A 170 LI 171 (179)
T ss_dssp TC
T ss_pred HH
Confidence 77
No 138
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.34 E-value=2.1e-07 Score=85.61 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=28.9
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCee
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG 94 (465)
++.+|+ +++|+|||||||||++++|++.+ |+.|
T Consensus 2 ~i~~g~---~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 2 DNEKGL---LIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp --CCCC---EEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCC---EEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 567899 99999999999999999999999 8666
No 139
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.31 E-value=1.4e-08 Score=97.54 Aligned_cols=42 Identities=17% Similarity=0.388 Sum_probs=31.4
Q ss_pred eEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec
Q 012357 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (465)
Q Consensus 58 L~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~ 103 (465)
+++.+ + +++|+||||||||||+++|+|++ |++|.|.++|.+.
T Consensus 23 ~~~~~-~---~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 23 FDLDE-L---VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp ECHHH-H---HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEcC-c---EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 44455 7 89999999999999999999999 9999999998765
No 140
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.31 E-value=2.3e-08 Score=92.75 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=44.3
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEE--EECCeec
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVI--TMDNYND 103 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I--~lDg~~~ 103 (465)
++++..++...+.+.+++..++|+ +++|+|+|||||||+++.|++.++..|.+ .+||..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~---~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGC---VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCE---EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCe---EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456666666777777888888899 99999999999999999999998544555 8887654
No 141
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.30 E-value=2.8e-08 Score=93.18 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=31.3
Q ss_pred CcceeeeeeeecCccHHHHHHHHHHHHHcCC--CHHHHHHHHhceEEEccCcEEEecCCc-ceEEeeCC
Q 012357 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQT-AHIKIINK 240 (465)
Q Consensus 175 ~p~LdllDEpts~LD~~l~rrIlrdl~e~G~--TI~~vi~~i~d~V~~m~~G~I~~~g~~-aDIiI~~~ 240 (465)
.+..++..+.+++.+....| +.+++.++|. +..+....+..|+...+.....|.... ++++|.++
T Consensus 138 ~~~~d~~i~l~~~~e~~~~R-~~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~ 205 (227)
T 1cke_A 138 FPDAPVKIFLDASSEERAHR-RMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDST 205 (227)
T ss_dssp CTTCSEEEEEECCHHHHHHH-HHHHHHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETT
T ss_pred ecCCCEEEEEeCCHHHHHHH-HHHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCC
Confidence 34567777788776664433 4444556676 667777777777655554444555443 33666543
No 142
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.27 E-value=7.5e-07 Score=82.56 Aligned_cols=43 Identities=23% Similarity=0.570 Sum_probs=35.8
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS 104 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~ 104 (465)
.+++|. +++|+|++||||||+++.|++.++....|..|++...
T Consensus 17 ~~~~~~---~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 17 RGSKTF---IIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKP 59 (207)
T ss_dssp CSCCCE---EEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCC
T ss_pred cCCCCe---EEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccC
Confidence 345666 9999999999999999999998766778888876543
No 143
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.26 E-value=3.4e-07 Score=93.53 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=49.2
Q ss_pred EeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEEC-Ceec---CccccccccCCCCCCccchHHHH
Q 012357 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMD-NYND---SSRIIDGNFDDPRLTDYDTLLEN 126 (465)
Q Consensus 53 L~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--P~sG~I~lD-g~~~---~~~~ig~vfQ~p~l~~~~tv~en 126 (465)
++++++. .+|+ +++|+||||||||||+++|+|.. |.+|.|..+ |... ....+++++|++.+++..++.++
T Consensus 206 l~~L~~~-~~G~---~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 206 LKPLEEA-LTGR---ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHHHHH-HTTS---EEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHHHHHh-cCCC---EEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 3455554 3688 99999999999999999999987 678999987 6432 23568899999888887777763
No 144
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.26 E-value=2.2e-07 Score=90.62 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=26.4
Q ss_pred EecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+++|+ +++|+||||||||||++.+++.+
T Consensus 27 l~~G~---i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGT---VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCC---EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999 99999999999999999999876
No 145
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.26 E-value=1.2e-07 Score=101.20 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=45.0
Q ss_pred EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee
Q 012357 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (465)
Q Consensus 51 ~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~ 102 (465)
.+++++++.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|..
T Consensus 248 ~~l~~l~~~v~~g~---~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 248 GVLAYLWLAIEHKF---SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHTTC---CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 46788999999999 99999999999999999999999 899999998754
No 146
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.23 E-value=1.8e-06 Score=79.02 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC-C-----------CeeEEEECCee
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM-P-----------SIAVITMDNYN 102 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll-P-----------~sG~I~lDg~~ 102 (465)
.+.++|+|+||||||||++.+++.. + ..|.|.++|..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence 4589999999999999999999987 4 47889999864
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.18 E-value=1.4e-08 Score=99.75 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=50.5
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCc-------cccccccCCC-CCCcc
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-------RIIDGNFDDP-RLTDY 120 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~~-------~~ig~vfQ~p-~l~~~ 120 (465)
...+++++++.+++| ++|.||||||||||+++|++... .+.|.++|..+.. +.++++||.. ...+.
T Consensus 32 ~~~~l~~~~l~~~~G-----vlL~Gp~GtGKTtLakala~~~~-~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG-----VLLAGPPGCGKTLLAKAVANESG-LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE-----EEEESSTTSCHHHHHHHHHHHTT-CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe-----EEEECCCCCcHHHHHHHHHHHcC-CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 344667777777765 89999999999999999999982 3789998865432 2356666653 23333
Q ss_pred chHHHHHH
Q 012357 121 DTLLENIR 128 (465)
Q Consensus 121 ~tv~enL~ 128 (465)
.++.+++.
T Consensus 106 i~~~Deid 113 (274)
T 2x8a_A 106 VIFFDEVD 113 (274)
T ss_dssp EEEEETCT
T ss_pred eEeeehhh
Confidence 34444443
No 148
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.18 E-value=1.1e-07 Score=92.32 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=36.3
Q ss_pred eee-Eeee-CcEEEEeeeeeEEec---CccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 41 DTL-SFEK-GFFIVIRACQLLAQK---NHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 41 ~~l-s~~~-g~~~aL~~VsL~i~~---Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+++ ++.| +...+|+++||.+.+ |+ +++|+|++||||||+++.|++.+
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~i~~~l~g~---~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 21 GSLLHSPFDEEQQILKKKAEEVKPYLNGR---SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------CHHHHHHHHTTHHHHTTC---CEEEECSTTSCHHHHHHHHHHHH
T ss_pred cceeeEEecCcchhhhhhhhhhhhhcCCC---EEEEECCCCCCHHHHHHHHHHhc
Confidence 456 7777 667899999999999 99 99999999999999999999976
No 149
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.18 E-value=1.4e-06 Score=77.75 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=29.3
Q ss_pred cCccceEEEEEcCCCCcHHHHHHHHHhcC-CCee--EEEECC
Q 012357 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA--VITMDN 100 (465)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG--~I~lDg 100 (465)
+|+ .++|.||||||||||++++++.. + .| .+.+++
T Consensus 35 ~g~---~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~ 72 (149)
T 2kjq_A 35 HGQ---FIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDA 72 (149)
T ss_dssp CCS---EEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEET
T ss_pred CCC---EEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcH
Confidence 788 99999999999999999999998 5 45 454443
No 150
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.14 E-value=7.8e-08 Score=91.41 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=31.4
Q ss_pred EecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCee
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~ 102 (465)
.++|+ +++|.|+||||||||+++|++. .|.|.+.+.+
T Consensus 17 ~~~g~---~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~ 53 (230)
T 2vp4_A 17 GTQPF---TVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEP 53 (230)
T ss_dssp TCCCE---EEEEECSTTSCHHHHHHTTGGG---TTTEEEECCT
T ss_pred CCCce---EEEEECCCCCCHHHHHHHHHhc---cCCeEEEecC
Confidence 35677 9999999999999999999998 5667777664
No 151
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.11 E-value=3.6e-07 Score=94.66 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=32.4
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHH--HhcCC-C-----eeEEEECCee
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKV--LNFMP-S-----IAVITMDNYN 102 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L--~gllP-~-----sG~I~lDg~~ 102 (465)
-+++|+ +++|+||||||||||++.| +++.| + .+.+.+++..
T Consensus 174 GI~~Ge---i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGS---ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTS---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCc---EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 468999 9999999999999999955 45554 2 4488888754
No 152
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.10 E-value=5.6e-08 Score=98.58 Aligned_cols=147 Identities=13% Similarity=0.107 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCcc-cccc---ccCCCCCCccchHHHHHHhhhccccccccccc
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR-IIDG---NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD 142 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~~~-~ig~---vfQ~p~l~~~~tv~enL~~l~~~~~~~~p~~d 142 (465)
.+|+|+||+|||||||++.|+..++ .-.|++|++.+.+. .++- -+.+-...+ ..+..+..+.. ..+.++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~-----hhl~di~~~~~-~~~~~d 80 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-GEIISGDSMQVYQGMDIGTAKVTTEEMEGIP-----HYMIDILPPDA-SFSAYE 80 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-EEEEECCSSTTBTTCCTTTTCCCTTTTTTCC-----EESSSCBCTTS-CCCHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-CceeccccccccccccccccCCCHHHHHHHH-----HHHHHHhCCcc-ccCHHH
Confidence 3899999999999999999999884 56788898732211 1110 000000000 00000011111 233334
Q ss_pred cccccccCccccccccchhhhhHhHHhhhhccCcceeeeeeee-cCcc--HHHHHHHHHHHHHcCCCHHHHHHHHhceEE
Q 012357 143 FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT-GGVH--FDLVKRVFRDIQRVGQEPEEIIHQISETVY 219 (465)
Q Consensus 143 ~~~~~~~~~~~~~l~~qRVlIaegl~aL~d~~~p~LdllDEpt-s~LD--~~l~rrIlrdl~e~G~TI~~vi~~i~d~V~ 219 (465)
|....+............++|+.|..+..+++...++ ++|+ ++.+ .+..+++.+ +.++|.+ .+.++...+-
T Consensus 81 F~~~a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~~---~l~~~L~~vd 154 (340)
T 3d3q_A 81 FKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNNN---KLHEYLASFD 154 (340)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCHH---HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCHH---HHHHHHHhhC
Confidence 3332221111111234567777888765566555554 4455 4333 225666666 5556753 4555555555
Q ss_pred EccCcEE
Q 012357 220 PMYKAFI 226 (465)
Q Consensus 220 ~m~~G~I 226 (465)
|++..+|
T Consensus 155 P~~a~~I 161 (340)
T 3d3q_A 155 KESAKDI 161 (340)
T ss_dssp HHHHHHS
T ss_pred cHHHhhc
Confidence 5554444
No 153
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.06 E-value=1.8e-06 Score=79.74 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=25.1
Q ss_pred cEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 49 ~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
...++++|||.+.++. +++|+|++||||||+++.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~---~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMV---RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCC---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCC---EEEEEcCCCCCHHHHHHHHHHHc
Confidence 3568999999999999 99999999999999999999877
No 154
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.05 E-value=2.4e-06 Score=88.87 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=38.7
Q ss_pred EeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc-----------C-CCeeEEEECC
Q 012357 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF-----------M-PSIAVITMDN 100 (465)
Q Consensus 53 L~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl-----------l-P~sG~I~lDg 100 (465)
-++++|+++.++ .++|+|+||||||||+++|++. + |+.|.+.+++
T Consensus 147 ~~~i~lelk~g~---~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~ 203 (416)
T 1udx_A 147 KRRLRLELMLIA---DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE 203 (416)
T ss_dssp EEEEEEEECCSC---SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS
T ss_pred EeeeeeEEcCCC---EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC
Confidence 478999999999 9999999999999999999998 3 4556666654
No 155
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.05 E-value=1e-06 Score=80.63 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CC---eeEEEECCee
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYN 102 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-P~---sG~I~lDg~~ 102 (465)
+++|+|+||||||||++.|.+++ |. .|.|.+||.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 89999999999999999999999 77 8999999876
No 156
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.02 E-value=2e-06 Score=86.36 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=55.8
Q ss_pred EeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------------ccccccc-cCC
Q 012357 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------------SRIIDGN-FDD 114 (465)
Q Consensus 53 L~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~----------------~~~ig~v-fQ~ 114 (465)
+++++|...+++ +++|+|+|||||||++..|++.+ +..|.|.+.+.+.. +..++++ +|.
T Consensus 95 ~~~l~~~~~~~~---vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLN---IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCE---EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCe---EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 367888878888 99999999999999999999999 77788877665542 1235566 666
Q ss_pred CCCCccchHHHHHHhh
Q 012357 115 PRLTDYDTLLENIRGL 130 (465)
Q Consensus 115 p~l~~~~tv~enL~~l 130 (465)
....+..++.+++...
T Consensus 172 ~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 172 LNADPASVVFDAIKKA 187 (320)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5555555667776654
No 157
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.02 E-value=7.9e-07 Score=80.00 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=39.8
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCc------cccccccCCCCCCccchHHHH
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLEN 126 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~~~------~~ig~vfQ~p~l~~~~tv~en 126 (465)
.+|+ +++|+|+|||||||+++.|++.+ |.+.+|+..+.. ...|+.+|+....++.+..++
T Consensus 6 ~~g~---~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 71 (175)
T 1knq_A 6 HDHH---IYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALND 71 (175)
T ss_dssp TTSE---EEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCc---EEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHH
Confidence 3467 99999999999999999999876 566677654422 134666665333333334443
No 158
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=98.02 E-value=5.5e-06 Score=76.47 Aligned_cols=139 Identities=17% Similarity=0.273 Sum_probs=99.7
Q ss_pred HHHHHHhcccccc---cccceeeeccCCCCCCchhhhhhhhhcCC--CceEEEEEeeecCCCCeEeeeeeeeeeeee---
Q 012357 263 DEIKAVMSKEHTE---TTEETYDIYLLPPGEDPDACQSYLRMRNR--DGKYNLMFEEWVTDSPFIISPRITFEVSVR--- 334 (465)
Q Consensus 263 ~~i~~~l~~~~~~---~~~~~~~i~~~p~~~~~~~~~~~i~~~~~--~~~~~l~~~~~~~~~p~i~~~~~~f~v~~~--- 334 (465)
+.+...|...... ......|+|.-.|.........|+|.|.. ++...+++.++..+.- . ++.+.
T Consensus 21 ~~~~~~L~~~g~~~~~~~~~q~d~yfd~p~~~l~~~~~~lRiR~~~~~~~~~~t~Kgp~~~~~-~-------e~~v~d~~ 92 (179)
T 3ghx_A 21 TTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPGAERC-E-------ASNIEDVS 92 (179)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSSSSBE-E-------EEECSCHH
T ss_pred HHHHHHHHhcCCccccCcceEEEEEEeCCCccHHHCCcEEEEEEecCCCcEEEEEecCCCCcE-E-------EEEcCCHH
Confidence 4455555443322 12234588887777666666677777764 3677788887766532 1 22222
Q ss_pred Eecc-ccccCcEEEEEEEeccceeecCcEEEEehhhhhcCcceEEEeccc---------hhHHHHHhhhhcCcc-Cccch
Q 012357 335 LLGG-LMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRD---------RLYVKYVGEQLGLDG-SYVPR 403 (465)
Q Consensus 335 il~g-l~~~g~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~~-~~~~~ 403 (465)
-+.. |..|||.++..+...-..|.-|.+.|.+|+.++|+ +|+-|-... ++.+.+++.+|||+. .-+++
T Consensus 93 ~~~~iL~~LG~~~~~~v~K~R~~y~~~~~~i~LD~v~glG-~f~EIE~~~~d~~~~~~~~~~i~~l~~~LGi~~~~~~~~ 171 (179)
T 3ghx_A 93 KVQSMLATLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPR 171 (179)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCS
T ss_pred HHHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEccCCCc-cEEEEEEEcCChhhHHHHHHHHHHHHHHcCcChhhceeh
Confidence 1122 34899999999999999999999999999999998 899998653 367788999999988 58899
Q ss_pred hHHHHHH
Q 012357 404 TYIEQIQ 410 (465)
Q Consensus 404 ~~~~~~~ 410 (465)
||+|+++
T Consensus 172 sY~eLl~ 178 (179)
T 3ghx_A 172 SYRQLLG 178 (179)
T ss_dssp CHHHHHT
T ss_pred hHHHHhh
Confidence 9998763
No 159
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.00 E-value=2.2e-06 Score=78.39 Aligned_cols=24 Identities=33% Similarity=0.677 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP 91 (465)
+++|+||||||||||+++|++++|
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 899999999999999999999994
No 160
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=97.97 E-value=1.5e-05 Score=73.37 Aligned_cols=130 Identities=22% Similarity=0.339 Sum_probs=99.7
Q ss_pred ceeeeccCCCCCCchhhhhhhhhc----CCCceEEEEEeeecCCCCeEeeeeeeeeeeee----Eecccc-ccCcEEEEE
Q 012357 279 ETYDIYLLPPGEDPDACQSYLRMR----NRDGKYNLMFEEWVTDSPFIISPRITFEVSVR----LLGGLM-ALGYTIATI 349 (465)
Q Consensus 279 ~~~~i~~~p~~~~~~~~~~~i~~~----~~~~~~~l~~~~~~~~~p~i~~~~~~f~v~~~----il~gl~-~~g~~~~~~ 349 (465)
...|+|.-.|+.+......++|.| +.++.+.+++.++..+.-+-.++ ++++.+. .+...+ .+|++....
T Consensus 29 ~q~d~YfDtp~~~L~~~~~~LRiR~~~~~~~~~~~lT~K~p~~~~~~~~r~--E~e~~v~~~~~~~~~~L~~lgl~~~~~ 106 (183)
T 2een_A 29 IHEDIYYQHPCRDFSKTDEALRIRIKRFNGHNEVFLTYKGPKIDEKSKTRL--EIEVEIQEDVDKYFELLDRLGFKEVLK 106 (183)
T ss_dssp EEEEEEEECSSSCHHHHTCEEEEEEEEETTEEEEEEEEEEEECCTTSCCEE--EEEEEECSCHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeEEcCCCccHHhCCeEEEEeeeecCCCCEEEEEECCCcCCCCceeEE--EEEEeecCCHHHHHHHHHHCCCeEEEE
Confidence 345888888888777777899999 77789999998886655444444 4444444 122333 499999999
Q ss_pred EEeccceeecC-cEEEEehhhhhcCcceEEEecc---------chhHHHHHhhhhcCccCccchhHHHHHHHhh
Q 012357 350 LKRSSHIFYDD-RVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDGSYVPRTYIEQIQLEK 413 (465)
Q Consensus 350 ~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (465)
+...-..|.-+ .+.|.+|+.+.++. |+-|-.. .+..+.+.+.+||| +..+++||+|++ +++
T Consensus 107 ~~k~R~~~~~~~~~~v~lD~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~~sY~ell-~~~ 177 (183)
T 2een_A 107 VVKTREKYYVEKGVTITLDEVEGLGK-FIEIETLVKEKDEIPEAVEKLEKILRELGV-EKFERRSYLELL-LEK 177 (183)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCCSCHHHHH-HHT
T ss_pred EEEEEEEEEeCCCEEEEEEeecCCee-EEEEEEecCCcccHHHHHHHHHHHHHHcCC-CCceeccHHHHH-Hhh
Confidence 98888888888 89999999998875 8787753 25678889999999 999999999887 443
No 161
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=8.1e-06 Score=81.40 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=28.5
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHh-cC-CCeeEEEECCeec
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLN-FM-PSIAVITMDNYND 103 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~g-ll-P~sG~I~lDg~~~ 103 (465)
..|..+. +.|.||||+||||++++|++ +. |+.|.+.++|...
T Consensus 32 ~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 32 QPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp CTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred hCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 3444344 89999999999999999999 66 8899999888643
No 162
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=97.95 E-value=2.9e-05 Score=70.20 Aligned_cols=122 Identities=25% Similarity=0.390 Sum_probs=93.6
Q ss_pred eeeeccCCCCCCchhhhhhhhhc--CCCceEEEEEeeecCCCCeEeeeeeeeee-eeeEeccc-cccCcEEEEEEEeccc
Q 012357 280 TYDIYLLPPGEDPDACQSYLRMR--NRDGKYNLMFEEWVTDSPFIISPRITFEV-SVRLLGGL-MALGYTIATILKRSSH 355 (465)
Q Consensus 280 ~~~i~~~p~~~~~~~~~~~i~~~--~~~~~~~l~~~~~~~~~p~i~~~~~~f~v-~~~il~gl-~~~g~~~~~~~~r~~~ 355 (465)
..|.|+-.|.. .++|.| +.++.+.+++.++. +++..+++-.+..| +..-+..+ -+||+.....+...-.
T Consensus 31 q~d~Yfdt~~~------~~LRiR~~~~~~~~~lT~K~~~-~g~~~~~~E~e~~i~~~~~~~~~L~~lg~~~~~~~~k~R~ 103 (165)
T 2dc4_A 31 QEDVYFELPSP------KLLRVRKINNTGKSYITYKEIL-DKRNEEFYELEFEVQDPEGAIELFKRLGFKVQGVVKKRRW 103 (165)
T ss_dssp EEEEEECCSTT------EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEBSCHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred EEEEEEcCCCC------CEEEEEEEcCCCEEEEEEeCcC-CCCceeeeEEEEEcCCHHHHHHHHHHcCCcEEEEEEEEEE
Confidence 44677755533 578888 56889999999887 77665555544444 11111112 2579999988888888
Q ss_pred eeecCcEEEEehhhhhcCcceEEEeccc------hhHHHHHhhhhcCccC-ccchhHHHHH
Q 012357 356 IFYDDRVCVKTDWLEQLNRKYVQVQGRD------RLYVKYVGEQLGLDGS-YVPRTYIEQI 409 (465)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~ 409 (465)
.|.-+.+.+.+|+.+.++ .|+-|-..+ ++.+.+.+.+|||+.. .+++||+|++
T Consensus 104 ~~~~~~~~i~lD~~~~~g-~~~EiE~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~ell 163 (165)
T 2dc4_A 104 IYKLNNVTFELNRVEKAG-DFLDIEVITSNPEEGKKIIWDVARRLGLKEEDVEPKLYIELI 163 (165)
T ss_dssp EEEETTEEEEEEEETTTE-EEEEEEECCSCHHHHHHHHHHHHHHTTCCGGGBCCSCHHHHC
T ss_pred EEEECCEEEEEEecCCCc-cEEEEEEEcCCHHHHHHHHHHHHHHcCCCcccceehhHHHHh
Confidence 898899999999999988 998998775 7788999999999987 8999999875
No 163
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.90 E-value=1.6e-05 Score=72.80 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=30.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC------CC------eeEEEECCee
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM------PS------IAVITMDNYN 102 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll------P~------sG~I~lDg~~ 102 (465)
.+.++|+|+||||||||++.+.|.. |+ .|.|.++|..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 3579999999999999999999974 22 5789999864
No 164
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.90 E-value=4e-06 Score=77.83 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=23.5
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcCC
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP 91 (465)
++|. +++|+||||||||||+++|.++.|
T Consensus 2 ~~g~---~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPR---PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---C---CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCC---EEEEECCCCCCHHHHHHHHHhhCc
Confidence 4577 999999999999999999999874
No 165
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.90 E-value=6e-06 Score=75.17 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=28.3
Q ss_pred cCccceEEEEEcCCCCcHHHHHHHHHhcCC--CeeEEEE
Q 012357 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITM 98 (465)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gllP--~sG~I~l 98 (465)
+|+ +++|+||||||||||+++|.+..| ..|.|+.
T Consensus 4 ~g~---~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRK---TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCC---EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCC---EEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 577 999999999999999999999884 3455543
No 166
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.88 E-value=2e-05 Score=78.73 Aligned_cols=44 Identities=16% Similarity=0.254 Sum_probs=36.4
Q ss_pred eeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec
Q 012357 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (465)
Q Consensus 57 sL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~ 103 (465)
++...+++ +++|+|+|||||||++..|++.+ +..|.|.+.+.+.
T Consensus 98 ~~~~~~~~---vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 98 NVPPEPPF---VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp CCCSSSCE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred cccCCCCe---EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 44446677 99999999999999999999999 7777887766553
No 167
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.87 E-value=6.9e-06 Score=74.21 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=29.3
Q ss_pred eeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCee
Q 012357 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (465)
Q Consensus 54 ~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG 94 (465)
+++++.+.+| +.+|+|+||||||||+++|.+++ +..|
T Consensus 18 ~~~~~~~~~g----~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG----FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SCEEEECCSS----EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred ccEEEecCCC----cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 3455555543 79999999999999999999998 5443
No 168
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.87 E-value=1.5e-07 Score=94.57 Aligned_cols=86 Identities=17% Similarity=0.072 Sum_probs=56.0
Q ss_pred eeEeeeCcEEEEeeeeeEEecC----ccceEEEEEcCCCCcHHHHHHHHHhcC-----CCeeEEEECCeec-------Cc
Q 012357 42 TLSFEKGFFIVIRACQLLAQKN----HGIILVGVAGPSGAGKTVFTEKVLNFM-----PSIAVITMDNYND-------SS 105 (465)
Q Consensus 42 ~ls~~~g~~~aL~~VsL~i~~G----e~~~IigIiGpSGSGKSTL~r~L~gll-----P~sG~I~lDg~~~-------~~ 105 (465)
+++..+|...+++++++.+..| +.+-.++|.||||+|||||+++|++.+ +.+|.+..++.++ .+
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~ 102 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLER 102 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCT
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccC
Confidence 4444556666777788877765 222289999999999999999999986 2344444333322 12
Q ss_pred cccccccCCCCCCccchHHHHHHh
Q 012357 106 RIIDGNFDDPRLTDYDTLLENIRG 129 (465)
Q Consensus 106 ~~ig~vfQ~p~l~~~~tv~enL~~ 129 (465)
..+.+++|...+.+ ++.+++..
T Consensus 103 ~~v~~iDE~~~l~~--~~~e~L~~ 124 (334)
T 1in4_A 103 GDVLFIDEIHRLNK--AVEELLYS 124 (334)
T ss_dssp TCEEEEETGGGCCH--HHHHHHHH
T ss_pred CCEEEEcchhhcCH--HHHHHHHH
Confidence 35677777655543 66776644
No 169
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.77 E-value=2.6e-06 Score=83.65 Aligned_cols=72 Identities=8% Similarity=0.064 Sum_probs=41.8
Q ss_pred chhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEEecCCcceEEee
Q 012357 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (465)
Q Consensus 159 qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~ 238 (465)
..++|++|.+++.....+..++..+.+++.+....|...| .|.+..++..++..+ ..... ....+|++|.
T Consensus 181 ~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R----~g~s~e~~~~ri~~q-~~~~~-----~~~~AD~vId 250 (281)
T 2f6r_A 181 KTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVER----DGLSEAAAQSRLQSQ-MSGQQ-----LVEQSNVVLS 250 (281)
T ss_dssp CCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHH----HCCCHHHHHHHHHTS-CCHHH-----HHHTCSEEEE
T ss_pred CCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHc----CCCCHHHHHHHHHHc-CChHh-----hHhhCCEEEE
Confidence 3567778876544434455678888888766554433333 377876666666555 22111 1135788876
Q ss_pred CC
Q 012357 239 NK 240 (465)
Q Consensus 239 ~~ 240 (465)
++
T Consensus 251 n~ 252 (281)
T 2f6r_A 251 TL 252 (281)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 170
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.76 E-value=4.5e-06 Score=75.52 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=29.1
Q ss_pred eEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCee
Q 012357 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (465)
Q Consensus 58 L~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG 94 (465)
+.+++|+ .++|.||||+|||||+++|++.+ |..|
T Consensus 33 ~~~~~g~---~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 33 FNPEEGK---GLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp CCGGGCC---EEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred ccccCCC---EEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 4557788 99999999999999999999988 5444
No 171
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.74 E-value=7.4e-05 Score=75.77 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=30.2
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECC
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN 100 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--P~sG~I~lDg 100 (465)
-+++|+ ++.|.|++|||||||+..++... +....+.++.
T Consensus 57 Gl~~G~---iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 57 GLPRGR---VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp SEETTS---EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCe---EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 458999 99999999999999998888665 3333455543
No 172
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.73 E-value=8.1e-06 Score=81.53 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=33.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC---------CCeeEEEECCeecC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM---------PSIAVITMDNYNDS 104 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll---------P~sG~I~lDg~~~~ 104 (465)
+++|+|+||||||||++.|.+.. |+.|.|.+||..+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred EEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 89999999999999999999883 68899999998653
No 173
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.73 E-value=1.7e-05 Score=73.87 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=25.9
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcCC
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP 91 (465)
++|. +++|+||||||||||++.|++.+|
T Consensus 6 ~~g~---~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGL---LIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCC---EEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCc---EEEEECcCCCCHHHHHHHHHhhCC
Confidence 5688 999999999999999999999984
No 174
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.69 E-value=3e-06 Score=95.95 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=59.9
Q ss_pred cchhhhhHhHHhhhhccCc--ceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEc-----
Q 012357 158 SSRIVIIEGIYALSEKLRP--LIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPM----- 221 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~p--~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m----- 221 (465)
.|||.||+++ ...| .++++||||++||+....++ ++++++.|.|+ ++++.. ||+++.|
T Consensus 470 ~QRv~LAraL-----~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii~lgpgag 543 (916)
T 3pih_A 470 SQRIRLATQI-----GSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-ADHIIDIGPGGG 543 (916)
T ss_dssp HHHHHHHHHH-----HTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-CSEEEEEESSSG
T ss_pred HHHHHHHHHH-----hhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEEcCCcc
Confidence 4999999999 5544 59999999999999865554 46666668888 666654 9999999
Q ss_pred -cCcEEEecCCcceEE
Q 012357 222 -YKAFIEPDLQTAHIK 236 (465)
Q Consensus 222 -~~G~I~~~g~~aDIi 236 (465)
++|+++.+|+..++.
T Consensus 544 ~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 544 TNGGRVVFQGTVDELL 559 (916)
T ss_dssp GGCSEEEEEECHHHHH
T ss_pred cCCCEEEEeechhhhh
Confidence 999999999988874
No 175
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.65 E-value=5.7e-06 Score=82.00 Aligned_cols=56 Identities=20% Similarity=0.090 Sum_probs=44.5
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~ 103 (465)
+++++.|+... +++++. +|+ +++|+|+||+||||++..|++.+ +..|.|.+.+.+.
T Consensus 80 ~~l~~~~~~~~--~~i~~~--~~~---~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 80 EALKEALGGEA--RLPVLK--DRN---LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp HHHHHHTTSSC--CCCCCC--SSE---EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred HHHHHHHCCCC--ceeecC--CCe---EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 44555555432 678887 788 99999999999999999999999 7778888877654
No 176
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.62 E-value=2.5e-06 Score=81.55 Aligned_cols=54 Identities=20% Similarity=0.136 Sum_probs=41.4
Q ss_pred eEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCee
Q 012357 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (465)
Q Consensus 43 ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~ 102 (465)
+...|+...+++++++.+++| ++|.||||+|||||+++|++... .|.+.+++.+
T Consensus 31 l~~~~~~~~~~~~~~~~~~~g-----~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~ 84 (254)
T 1ixz_A 31 IVEFLKNPSRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSD 84 (254)
T ss_dssp HHHHHHCHHHHHHTTCCCCSE-----EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHH
T ss_pred HHHHHHCHHHHHHcCCCCCCe-----EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHH
Confidence 333344445677778877765 88999999999999999999983 7788887754
No 177
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.61 E-value=2.5e-05 Score=69.70 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+++|+|+|||||||+++.|++.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999988
No 178
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.60 E-value=1.9e-05 Score=85.02 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=35.9
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCee-EE-EECCeec
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VI-TMDNYND 103 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG-~I-~lDg~~~ 103 (465)
.+++|+ +++|+|+||||||||+++|++.+ |+.| .+ .+||...
T Consensus 365 ~~~~G~---iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGF---TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCE---EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccce---EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 457888 99999999999999999999999 8876 56 4888654
No 179
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.58 E-value=3.2e-06 Score=82.21 Aligned_cols=56 Identities=20% Similarity=0.134 Sum_probs=43.5
Q ss_pred eeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCee
Q 012357 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (465)
Q Consensus 41 ~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~ 102 (465)
+++...|+...+++++++.+++| ++|.||||||||||+++|++.++ .|.+.+++.+
T Consensus 53 ~~l~~~~~~~~~l~~~~~~~~~g-----vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~ 108 (278)
T 1iy2_A 53 KEIVEFLKNPSRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSD 108 (278)
T ss_dssp HHHHHHHHCHHHHHHTTCCCCCE-----EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHH
T ss_pred HHHHHHHHCHHHHHHcCCCCCCe-----EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHH
Confidence 33444454456778888888765 88999999999999999999984 7788887754
No 180
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.55 E-value=1.3e-05 Score=82.29 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=45.0
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEE-CCeecC-ccccccccCCC
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITM-DNYNDS-SRIIDGNFDDP 115 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~l-Dg~~~~-~~~ig~vfQ~p 115 (465)
..+++++++.+++|+ +++|.||||||||||+++|++.. .|.+.. +.-... ...++++||.+
T Consensus 156 ~~~l~~~~~~i~~~~---~i~l~G~~GsGKSTl~~~l~~~~--~g~~~~~~~~~~~~~~~lg~~~q~~ 218 (377)
T 1svm_A 156 YDFLKCMVYNIPKKR---YWLFKGPIDSGKTTLAAALLELC--GGKALNVNLPLDRLNFELGVAIDQF 218 (377)
T ss_dssp HHHHHHHHHCCTTCC---EEEEECSTTSSHHHHHHHHHHHH--CCEEECCSSCTTTHHHHHGGGTTCS
T ss_pred HHHHHhcccccCCCC---EEEEECCCCCCHHHHHHHHHhhc--CCcEEEEeccchhHHHHHHHhcchh
Confidence 357888999999999 99999999999999999999975 455444 211111 11367777765
No 181
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.48 E-value=3.5e-05 Score=69.51 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=31.6
Q ss_pred cCccceEEEEEcCCCCcHHHHHHHHHhcCCCee--EEEECCeec
Q 012357 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIA--VITMDNYND 103 (465)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG--~I~lDg~~~ 103 (465)
+|. +++|.|++||||||+++.|++.++..| .+.+|+...
T Consensus 4 ~g~---~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGC---TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCc---EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 466 999999999999999999999872134 777887554
No 182
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.48 E-value=5.8e-05 Score=70.70 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=26.1
Q ss_pred EecCccceEEEEEcCCCCcHHHHHHHHHhcCC
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP 91 (465)
..+|+ +++|+||||||||||++.|.+..|
T Consensus 16 ~~~g~---~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRK---TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCC---EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCC---EEEEECcCCCCHHHHHHHHHhhCC
Confidence 35678 999999999999999999999875
No 183
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.43 E-value=8.4e-05 Score=76.97 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=27.2
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCe
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI 93 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~s 93 (465)
.+..|+ +++|+||||||||||+++|++++ |.+
T Consensus 22 ~~~~~~---~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 22 GFGESN---FTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp ECTTCS---EEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EecCCC---EEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 356688 99999999999999999999998 654
No 184
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.43 E-value=6.8e-05 Score=69.05 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gl 89 (465)
+++||+|++||||||+++.|+++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 48999999999999999999983
No 185
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=97.38 E-value=0.00044 Score=63.23 Aligned_cols=121 Identities=19% Similarity=0.308 Sum_probs=87.7
Q ss_pred eeeeccCCCCCCchhhhhhhhhcC--CCceEEEEEeeecCCCCeEeeeeeeeeeeee----EeccccccCcEEEEEEEec
Q 012357 280 TYDIYLLPPGEDPDACQSYLRMRN--RDGKYNLMFEEWVTDSPFIISPRITFEVSVR----LLGGLMALGYTIATILKRS 353 (465)
Q Consensus 280 ~~~i~~~p~~~~~~~~~~~i~~~~--~~~~~~l~~~~~~~~~p~i~~~~~~f~v~~~----il~gl~~~g~~~~~~~~r~ 353 (465)
..|+|.-.|+........++|.|. .++...+.+.|.-... +.++.+. +..-+.++||+..+.+...
T Consensus 41 q~d~Yfd~p~~~l~~~~~~lRiR~~~~~~~~~lt~kg~~~~~--------e~e~~v~~~~~~~~~l~~lg~~~~~~~~k~ 112 (179)
T 3n10_A 41 EKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPGAER--------CEASNIEDVSKVQSMLATLGYHPAFTIEKQ 112 (179)
T ss_dssp EEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSSSSB--------EEEEECSCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEEeCCChhHHhCCceEEEEecCCCceEEEEEcCCcccc--------ceeeccCCHHHHHHHHHhCCCeEEEEEEEE
Confidence 347888778777665566666665 3566777776643321 2222221 1112467899999999999
Q ss_pred cceeecCcEEEEehhhhhcCcceEEEeccc---------hhHHHHHhhhhcCc-cCccchhHHHHH
Q 012357 354 SHIFYDDRVCVKTDWLEQLNRKYVQVQGRD---------RLYVKYVGEQLGLD-GSYVPRTYIEQI 409 (465)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~ 409 (465)
-++|.-+.+.|.+|+.+.++ +|+.|-.-. ++.+.+++.+|||+ ..-+++||+|++
T Consensus 113 R~~~~~~~~~v~lD~v~~lG-~f~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~sY~eLL 177 (179)
T 3n10_A 113 RSIYFVGKFHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLL 177 (179)
T ss_dssp EEEEEETTEEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHH
T ss_pred EEEEEECCEEEEEEeccCCC-cEEEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhcceecHHHHh
Confidence 99999999999999999998 688887532 35688899999997 557899999986
No 186
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.38 E-value=6.4e-06 Score=83.05 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=39.2
Q ss_pred CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe
Q 012357 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (465)
Q Consensus 48 g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~ 101 (465)
+...+++++++...++. +++|+|++|||||||++.|++.+ +..+.+.+-+.
T Consensus 41 ~~~~~~~~l~~~~~~~~---~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 41 LSTQLLDAIMPYCGNTL---RLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp HHHHHHHHHGGGCSCSE---EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHhCCcccCCCE---EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 33455666677777888 99999999999999999999988 55555555443
No 187
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.34 E-value=5e-05 Score=70.61 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=34.6
Q ss_pred EecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCee--EEEECCeec
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA--VITMDNYND 103 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG--~I~lDg~~~ 103 (465)
+.+|. ++.|.|++||||||+++.|.+.+ |..| .+.+|+..+
T Consensus 22 ~~~~~---~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGL---TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCE---EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCC---EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45677 99999999999999999999998 5777 888886443
No 188
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.28 E-value=3.3e-05 Score=83.76 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=50.1
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCe-eEEEECCee
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI-AVITMDNYN 102 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~s-G~I~lDg~~ 102 (465)
+++++--+|...+++++++.+.+|+ .++|.||||+|||||+++|++++ +.. |.+.+++..
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQKR---HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred ccccceEECchhhHhhccccccCCC---EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 3455555677888999999999999 99999999999999999999999 544 777776654
No 189
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.27 E-value=0.00014 Score=66.17 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=30.6
Q ss_pred eeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 012357 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (465)
Q Consensus 55 ~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg 100 (465)
++|+...++. +++|+|++||||||+++.|+..+.....+..|.
T Consensus 2 ~~~~~~~~~~---~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~ 44 (184)
T 1y63_A 2 PGSMEQPKGI---NILITGTPGTGKTSMAEMIAAELDGFQHLEVGK 44 (184)
T ss_dssp ----CCCSSC---EEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHH
T ss_pred CcCcCCCCCC---EEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHH
Confidence 4677777888 999999999999999999998732333454443
No 190
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.26 E-value=8.6e-05 Score=75.69 Aligned_cols=77 Identities=9% Similarity=-0.105 Sum_probs=57.3
Q ss_pred chhhhhHhHHhh---hh-ccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHH--HHHHhceEEEccCcEEEecCCc
Q 012357 159 SRIVIIEGIYAL---SE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI--IHQISETVYPMYKAFIEPDLQT 232 (465)
Q Consensus 159 qRVlIaegl~aL---~d-~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~v--i~~i~d~V~~m~~G~I~~~g~~ 232 (465)
|+++|+.++.-. .. ...|.++++|||+++||+.....++..+.+.+.|+.-+ ...+|++++.+.+|++...++.
T Consensus 272 q~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~~~~~~~i~~l~~G~i~~~g~~ 351 (359)
T 2o5v_A 272 RTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTELAPGAALTLRAQAGRFTPVADE 351 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSCCTTCSEEEEEETTEEEECCCT
T ss_pred HHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEeccccCCEEEEEECCEEEecCCH
Confidence 889999998311 11 27899999999999999998888877776644444100 0118999999999999988877
Q ss_pred ceE
Q 012357 233 AHI 235 (465)
Q Consensus 233 aDI 235 (465)
.++
T Consensus 352 ~~~ 354 (359)
T 2o5v_A 352 EMQ 354 (359)
T ss_dssp TTS
T ss_pred HHH
Confidence 665
No 191
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.25 E-value=0.00012 Score=67.07 Aligned_cols=31 Identities=23% Similarity=0.465 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg 100 (465)
+|+|+|+|||||||+++.|++ + ..-.+..|.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~-g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L-GAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T-TCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C-CCEEEEccH
Confidence 799999999999999999999 5 333455444
No 192
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.22 E-value=1.5e-05 Score=85.40 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=42.9
Q ss_pred eeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee
Q 012357 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (465)
Q Consensus 46 ~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~ 102 (465)
.++...+++++++.+ +|+ +++|.||||+|||||+++|++.+ +..|.|.+.|..
T Consensus 92 ~i~~~~~l~~~~~~~-~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 92 RILEYLAVQKLTKSL-KGP---ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHHHHHSSSC-CSC---EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHHHHHHhcccC-CCC---EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 344445677778777 688 99999999999999999999999 778888887753
No 193
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.19 E-value=0.00016 Score=66.73 Aligned_cols=29 Identities=38% Similarity=0.566 Sum_probs=25.7
Q ss_pred EecCccceEEEEEcCCCCcHHHHHHHHHhcCC
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP 91 (465)
..+|. +++|+|||||||||+++.|...+|
T Consensus 9 ~~~~~---~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIP---PLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCC---CEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCC---EEEEECCCCCCHHHHHHHHHHhCc
Confidence 35677 999999999999999999998875
No 194
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.17 E-value=0.00015 Score=73.96 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=44.2
Q ss_pred EecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCee-EEEECCeecC----ccccccccCCCCCCccchHHHHH
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYNDS----SRIIDGNFDDPRLTDYDTLLENI 127 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG-~I~lDg~~~~----~~~ig~vfQ~p~l~~~~tv~enL 127 (465)
+++|+ ++.|.||+|||||||+..++... +..| .+.+++.... .+++++.+|+.......++.+.+
T Consensus 58 i~~G~---i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l 128 (356)
T 3hr8_A 58 YPRGR---IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQAL 128 (356)
T ss_dssp EETTE---EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH
T ss_pred ccCCc---EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHH
Confidence 58899 99999999999999999999887 5444 5567665432 13456666554433334444443
No 195
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.17 E-value=0.00011 Score=72.72 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=27.6
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCee
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG 94 (465)
.+|+ +++|+|+|||||||++..|++.+ +..|
T Consensus 103 ~~g~---vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 103 IHSK---YIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CCSS---EEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCc---EEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 3577 99999999999999999999998 6566
No 196
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.16 E-value=0.00016 Score=68.75 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=28.3
Q ss_pred EEeeeeeEEe---cCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEE
Q 012357 52 VIRACQLLAQ---KNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVIT 97 (465)
Q Consensus 52 aL~~VsL~i~---~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~ 97 (465)
-|.++++.+. +|. +|.|.|++||||||+++.|...++..+.+.
T Consensus 12 ~~~~~~~~~~~~~~g~---~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~ 57 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSA---FITFEGPEGSGKTTVINEVYHRLVKDYDVI 57 (229)
T ss_dssp --------CCCCCCCE---EEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred CccCCCeeEeecCCCe---EEEEEcCCCCCHHHHHHHHHHHHhcCCCce
Confidence 3566777776 566 999999999999999999999883233443
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.15 E-value=0.00013 Score=73.90 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~ 103 (465)
.+++|+|++|||||||++.|.+.+ +..|.|.+.+.+.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 399999999999999999999988 7767776665543
No 198
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.13 E-value=0.00016 Score=66.38 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|+|+|++||||||+++.|++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999876
No 199
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.11 E-value=0.00036 Score=63.31 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=20.8
Q ss_pred EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 51 ~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+++++++..++.. ++|+|++|+|||||++.+.+-
T Consensus 12 ~~l~~~~~~~~~~k----i~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHGK----LLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------CE----EEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCccE----EEEECCCCCCHHHHHHHHhcC
Confidence 46778888766654 899999999999999999973
No 200
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.08 E-value=0.00018 Score=81.82 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=60.4
Q ss_pred chhhhhHhHHhhhhccC--cceeeeeeeecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEc------
Q 012357 159 SRIVIIEGIYALSEKLR--PLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPM------ 221 (465)
Q Consensus 159 qRVlIaegl~aL~d~~~--p~LdllDEpts~LD~~l~rrI---lrdl~e~G~TI------~~vi~~i~d~V~~m------ 221 (465)
|||.||.++ ... |.++++||||++||+....++ ++.+++.|.|+ ++++. .||+|++|
T Consensus 528 QRV~LA~aL-----~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~Lgp~aG~ 601 (993)
T 2ygr_A 528 QRIRLATQI-----GSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIVDIGPGAGE 601 (993)
T ss_dssp HHHHHHHHH-----TTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEEEECSSSGG
T ss_pred HHHHHHHHH-----hhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEEEecCcccc
Confidence 999999999 655 689999999999999865554 57777789998 66665 69999999
Q ss_pred cCcEEEecCCcceEE
Q 012357 222 YKAFIEPDLQTAHIK 236 (465)
Q Consensus 222 ~~G~I~~~g~~aDIi 236 (465)
++|+++.+|+.+++.
T Consensus 602 ~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 602 HGGRIVHSGPYDELL 616 (993)
T ss_dssp GCCSCCEEECHHHHH
T ss_pred CCCEEEEeeCHHHhh
Confidence 789999999887763
No 201
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.08 E-value=0.00034 Score=65.40 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=31.2
Q ss_pred eeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCe
Q 012357 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNY 101 (465)
Q Consensus 57 sL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--P~sG~I~lDg~ 101 (465)
.--+++|+ +++|+|+||||||||+..++... +..+.+.++..
T Consensus 17 ~gGl~~G~---~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 17 HGGIPERN---VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TTSEETTC---EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCCCc---EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 33468999 99999999999999977665544 44556665543
No 202
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.07 E-value=0.00017 Score=81.82 Aligned_cols=71 Identities=13% Similarity=0.170 Sum_probs=59.7
Q ss_pred chhhhhHhHHhhhhccC--cceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEc------
Q 012357 159 SRIVIIEGIYALSEKLR--PLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPM------ 221 (465)
Q Consensus 159 qRVlIaegl~aL~d~~~--p~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m------ 221 (465)
|||.||.++ ... |.++++||||++||+....+ +++++++.|.|+ ++++. .||+|++|
T Consensus 511 QRV~LA~aL-----~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~ 584 (972)
T 2r6f_A 511 QRIRLATQI-----GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGI 584 (972)
T ss_dssp HHHHHHHHH-----TTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGG
T ss_pred HHHHHHHHH-----hhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccC
Confidence 999999999 554 58999999999999876554 457777779998 66665 69999999
Q ss_pred cCcEEEecCCcceE
Q 012357 222 YKAFIEPDLQTAHI 235 (465)
Q Consensus 222 ~~G~I~~~g~~aDI 235 (465)
++|+++.+|+.+++
T Consensus 585 ~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 585 HGGEVVAAGTPEEV 598 (972)
T ss_dssp GCCSEEEEECTTTT
T ss_pred CCCEEEEecCHHHH
Confidence 89999999988876
No 203
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.04 E-value=8.6e-05 Score=77.37 Aligned_cols=56 Identities=20% Similarity=0.074 Sum_probs=42.6
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~ 102 (465)
.++++..|+... +++++. ++. +++++|++||||||++..|++.+ +..+.|.+.+.+
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~---vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRN---LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSE---EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHhCCCc--ccccCC--CCe---EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 344555555433 677776 667 99999999999999999999999 777777766544
No 204
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.03 E-value=0.00077 Score=69.99 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=31.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC-------------CCeeEEEECCee
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM-------------PSIAVITMDNYN 102 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll-------------P~sG~I~lDg~~ 102 (465)
.++.++|+|+||||||||++.|.|.. |..|.+.++|..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 46789999999999999999999873 245788888864
No 205
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.02 E-value=0.00034 Score=62.04 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998655
No 206
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.01 E-value=0.0003 Score=61.67 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+|+|.|++||||||+++.| ..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 48999999999999999999 444
No 207
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.01 E-value=0.00034 Score=63.60 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=22.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
++.+|+|+|++||||||+++.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3569999999999999999999986
No 208
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.00 E-value=0.00034 Score=61.69 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|+|.|++||||||+++.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999876
No 209
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.98 E-value=0.0004 Score=61.75 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLN 88 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~g 88 (465)
|.+|.|.|++||||||+++.|+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 45899999999999999999997
No 210
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.98 E-value=0.00038 Score=64.61 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLN 88 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~g 88 (465)
+.+|+|.|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45999999999999999999998
No 211
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.98 E-value=0.00017 Score=74.27 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=54.3
Q ss_pred CCccccccccceeeeeccCcceeeceeeeeeeEeeeC-cEEEEe--------------eeeeEEecCccceEEEEEcCCC
Q 012357 12 PRRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFEKG-FFIVIR--------------ACQLLAQKNHGIILVGVAGPSG 76 (465)
Q Consensus 12 ~~~~~~l~~~~~~l~~~~~~k~y~~~~v~~~ls~~~g-~~~aL~--------------~VsL~i~~Ge~~~IigIiGpSG 76 (465)
.+|-.+|++-+. ++.............+++++.|. .+..++ |+.+.+.+|+ .++|+||+|
T Consensus 110 ~ER~faLl~v~~--vn~~~pe~~~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQ---r~~IvG~sG 184 (422)
T 3ice_A 110 GERYFALLKVNE--VNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQ---RGLIVAPPK 184 (422)
T ss_dssp SCCSEEEEEEEE--ESSSCHHHHTTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTC---EEEEECCSS
T ss_pred cchHHHHhccCc--ccCCChhhhcCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCc---EEEEecCCC
Confidence 456677777442 11111112233456678888885 467888 8999999999 999999999
Q ss_pred CcHHHHHHHHHhcC
Q 012357 77 AGKTVFTEKVLNFM 90 (465)
Q Consensus 77 SGKSTL~r~L~gll 90 (465)
+|||||++.|+..+
T Consensus 185 ~GKTtLl~~Iar~i 198 (422)
T 3ice_A 185 AGKTMLLQNIAQSI 198 (422)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHH
Confidence 99999999998875
No 212
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.95 E-value=0.00026 Score=64.11 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=28.8
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeE-EEECC
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAV-ITMDN 100 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~-I~lDg 100 (465)
.+|. ++.|.|++||||||+++.|+..+ +..+. +.+|+
T Consensus 11 ~~~~---~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 11 EKGI---VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp SCCE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCc---EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 4566 99999999999999999999988 43333 34554
No 213
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.94 E-value=0.0004 Score=61.99 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP 91 (465)
+|.|.|++||||||+++.|+..++
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999883
No 214
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.92 E-value=0.00034 Score=67.06 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=29.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCee
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~ 102 (465)
.+.++.|+|++||||||+++.|+..++ .+.+.+|+-.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~ 67 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDS 67 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHH
Confidence 345999999999999999999999883 3456667643
No 215
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.91 E-value=0.00013 Score=66.91 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=27.5
Q ss_pred EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHh
Q 012357 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (465)
Q Consensus 51 ~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~g 88 (465)
.+++++++..++.. ++|+|++|+|||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~k----i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK----LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEE----EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcE----EEEECCCCCCHHHHHHHHhc
Confidence 46677777655544 89999999999999999986
No 216
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.90 E-value=4.4e-05 Score=76.24 Aligned_cols=53 Identities=21% Similarity=0.135 Sum_probs=41.2
Q ss_pred eeeeEeeeCcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCe
Q 012357 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI 93 (465)
Q Consensus 40 ~~~ls~~~g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~s 93 (465)
+.+++.-+|...+++.++..+.+|+-+. +.+.||+|+||||+++++++.+ +..
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 3444445566678888888889998222 9999999999999999999988 543
No 217
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.90 E-value=0.00054 Score=62.68 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-C---CeeEEEECC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDN 100 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-P---~sG~I~lDg 100 (465)
+++|+|+||||||||++.|.+.+ + ..|.|..++
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 89999999999999999999876 3 357777654
No 218
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.88 E-value=0.00081 Score=60.00 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
++.++|+|++|+|||||++.+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999984
No 219
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.84 E-value=0.0006 Score=65.61 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~ 101 (465)
++.|+||+|||||||++.|++.++ .-.|..|..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~-~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG-WPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC-CCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC-CeEEeccHH
Confidence 789999999999999999998763 346777764
No 220
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.80 E-value=0.00054 Score=61.57 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|+|.|++||||||+++.|+..+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998654
No 221
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.80 E-value=0.00067 Score=60.95 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+|+|.|++||||||+++.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 222
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.72 E-value=0.00086 Score=65.87 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=27.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg 100 (465)
.+.++.|+|||||||||+++.|...++ .+.+++++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEec
Confidence 355999999999999999999988764 24555654
No 223
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.71 E-value=0.00029 Score=69.82 Aligned_cols=46 Identities=15% Similarity=0.090 Sum_probs=36.2
Q ss_pred ee-eeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec
Q 012357 54 RA-CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (465)
Q Consensus 54 ~~-VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~ 103 (465)
++ +++..+ +. +++++|++|+||||++..|++.+ +..+.+.+.+.+.
T Consensus 89 ~~~i~~~~~-~~---vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PY---VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SE---EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccccccCCC-Ce---EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45 666654 66 99999999999999999999998 6666666655443
No 224
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.71 E-value=0.00077 Score=64.64 Aligned_cols=64 Identities=8% Similarity=0.033 Sum_probs=37.3
Q ss_pred cCcceeeeeeeecCccHHHHHHHHHHHHHc--CCCHHHHHHHHhceEEEccCcEEEecCCcce-EEee
Q 012357 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKII 238 (465)
Q Consensus 174 ~~p~LdllDEpts~LD~~l~rrIlrdl~e~--G~TI~~vi~~i~d~V~~m~~G~I~~~g~~aD-IiI~ 238 (465)
..|.-++++|.+++++.+..|+. +++.++ +.+..++..++..+-..-...++-|....+| ++|.
T Consensus 142 V~pda~lkifl~A~~e~Ra~Rr~-~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~ID 208 (233)
T 3r20_A 142 VLPDADVKIFLTASAEERARRRN-AQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVD 208 (233)
T ss_dssp CCTTCSEEEEEECCHHHHHHHHH-HHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEE
T ss_pred EcCCCCEEEEEECCHHHHHHHHH-HHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEE
Confidence 44566799999999888765554 444444 5566666655554433333334444444444 5554
No 225
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.68 E-value=0.00085 Score=60.82 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999876
No 226
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.68 E-value=0.00087 Score=60.37 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+|.|.|++||||||+++.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3499999999999999999998765
No 227
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.67 E-value=0.00096 Score=59.83 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|.|.|++||||||+++.|+..+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998866
No 228
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.67 E-value=0.00092 Score=58.92 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..++|+|++|+|||||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999864
No 229
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.67 E-value=0.0007 Score=76.11 Aligned_cols=71 Identities=10% Similarity=0.102 Sum_probs=59.2
Q ss_pred chhhhhHhHHhhhhccCc--ceeeeeeeecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEc------
Q 012357 159 SRIVIIEGIYALSEKLRP--LIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPM------ 221 (465)
Q Consensus 159 qRVlIaegl~aL~d~~~p--~LdllDEpts~LD~~l~r---rIlrdl~e~G~TI------~~vi~~i~d~V~~m------ 221 (465)
|||.||.++ ..+| .++++||||++||+..+. ++++.+++.|.|+ ++++. .||+|++|
T Consensus 386 QRV~LA~aL-----~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~lgpgaG~ 459 (842)
T 2vf7_A 386 QRLRLATQL-----YSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RADWLVDVGPEAGE 459 (842)
T ss_dssp HHHHHHHHT-----TTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TCSEEEEECSSSGG
T ss_pred HHHHHHHHH-----hhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hCCEEEEeCCCccc
Confidence 999999999 6666 599999999999887544 4556777789998 66665 69999999
Q ss_pred cCcEEEecCCcceE
Q 012357 222 YKAFIEPDLQTAHI 235 (465)
Q Consensus 222 ~~G~I~~~g~~aDI 235 (465)
.+|+++.+|+.+++
T Consensus 460 ~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 460 KGGEILYSGPPEGL 473 (842)
T ss_dssp GCCSEEEEECGGGG
T ss_pred CCCEEEEecCHHHH
Confidence 78999998887775
No 230
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.66 E-value=0.00042 Score=63.65 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|+|.|++||||||+++.|...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999887
No 231
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.60 E-value=0.0011 Score=62.48 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=23.9
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+|. +++|+|++||||||+++.|++.+
T Consensus 14 ~~~~---~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTI---QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCC---EEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCc---EEEEECCCCCCHHHHHHHHHHHc
Confidence 4566 99999999999999999999855
No 232
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=96.58 E-value=0.00079 Score=59.96 Aligned_cols=59 Identities=5% Similarity=-0.076 Sum_probs=43.7
Q ss_pred cchhhhh------HhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHH---HHcCCCH------HHHHHHHhceEEEcc
Q 012357 158 SSRIVII------EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDI---QRVGQEP------EEIIHQISETVYPMY 222 (465)
Q Consensus 158 ~qRVlIa------egl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl---~e~G~TI------~~vi~~i~d~V~~m~ 222 (465)
.||+.|+ +++ ..+|.++++||||+++|+.....+..-+ .+.|.|+ . .+..+||+++.+.
T Consensus 63 ~qrv~lA~~Lalaral-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~d~ii~l~ 136 (148)
T 1f2t_B 63 RIALGLAFRLAMSLYL-----AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAADHVIRIS 136 (148)
T ss_dssp HHHHHHHHHHHHHHHH-----HSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHhhhHHHHHH-----cCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhCCEEEEEE
Confidence 3788765 666 6789999999999999998766655444 3447666 4 3567889988883
No 233
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.57 E-value=0.00095 Score=59.72 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
++.|+|++||||||+++.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 234
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.57 E-value=0.001 Score=59.98 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|+|.|++||||||+++.|+..+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998765
No 235
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.55 E-value=0.0013 Score=59.96 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcCC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFMP 91 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gllP 91 (465)
.+|+|.|++||||||+++.|+..++
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3899999999999999999998773
No 236
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.55 E-value=0.0011 Score=59.95 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+|+|.|++||||||+++.|+..+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 399999999999999999999866
No 237
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.55 E-value=0.0011 Score=61.59 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998766
No 238
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.54 E-value=0.0021 Score=65.44 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC------------CCeeEEEECCeec
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM------------PSIAVITMDNYND 103 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll------------P~sG~I~lDg~~~ 103 (465)
+++|+|++|||||||++.|.+.. |..+.+.++|..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 69999999999999999999875 2457888887543
No 239
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.54 E-value=0.0012 Score=60.16 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+++|.|++||||||+++.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999866
No 240
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.51 E-value=0.0014 Score=59.88 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=25.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEEC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lD 99 (465)
+.+|+|.|++||||||+++.|+..+. .-.+..|
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g-~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYS-FVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS-CEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-ceEEeHH
Confidence 55899999999999999999987662 2344444
No 241
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.51 E-value=0.0016 Score=59.28 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|+|.|++||||||+++.|+..+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999877
No 242
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.49 E-value=0.0015 Score=58.70 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|.|+|++||||||+++.|+..+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998776
No 243
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.49 E-value=0.0014 Score=58.74 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+|+|.|++||||||+++.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998765
No 244
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.49 E-value=0.0013 Score=59.36 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|+|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999876
No 245
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.49 E-value=0.0014 Score=58.73 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|.|.|++||||||+++.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999876
No 246
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.48 E-value=0.0015 Score=60.53 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~ 101 (465)
-.+|||+|+.||||||+++.|+..+ ....|..|.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l-g~~vid~D~~ 46 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY-GAHVVNVDRI 46 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-CCEEEECcHH
Confidence 3499999999999999999999875 3445666654
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.48 E-value=0.00088 Score=71.12 Aligned_cols=47 Identities=23% Similarity=0.243 Sum_probs=37.8
Q ss_pred EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeec
Q 012357 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 103 (465)
Q Consensus 51 ~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~~ 103 (465)
.+++++++.+++| +.|.||||+|||||+++|++.. ..+.+.+++.++
T Consensus 54 ~~~~~lg~~ip~G-----vLL~GppGtGKTtLaraIa~~~-~~~~i~i~g~~~ 100 (499)
T 2dhr_A 54 SRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEA-RVPFITASGSDF 100 (499)
T ss_dssp GGTTTTSCCCCSE-----EEEECSSSSSHHHHHHHHHHHT-TCCEEEEEGGGG
T ss_pred hhhhhccCCCCce-----EEEECCCCCCHHHHHHHHHHHh-CCCEEEEehhHH
Confidence 4566677776654 8899999999999999999998 467888887654
No 248
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.46 E-value=0.0013 Score=60.27 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|+|.|++||||||+++.|+..+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999765
No 249
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.46 E-value=0.00095 Score=59.67 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+|.|.|++||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999999776
No 250
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.46 E-value=0.00096 Score=62.94 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=36.3
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCccccccccCCCCCCccchHHHHHHhh
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGL 130 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg~~~~~~~ig~vfQ~p~l~~~~tv~enL~~l 130 (465)
.+|+ .+.|.||+||||||++..+.... ...+. ....+.+++.|.......+.+++...
T Consensus 74 ~~g~---~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---------~~~~~~l~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 74 SQNS---VVIIRGATGCGKTTQVPQFILDDFIQNDR---------AAECNIVVTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp HHCS---EEEEECCTTSSHHHHHHHHHHHHHHHTTC---------GGGCEEEEEESSHHHHHHHHHHHHHT
T ss_pred hcCC---EEEEEeCCCCCcHHhHHHHHhcchhhcCC---------CCceEEEEeccchHHHHHHHHHHHHH
Confidence 5688 99999999999999887664321 11110 12345566666555555666666543
No 251
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.45 E-value=0.001 Score=67.72 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=28.0
Q ss_pred EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHh
Q 012357 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (465)
Q Consensus 52 aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~g 88 (465)
.++++++.+.+| +++|+|||||||||++++|.+
T Consensus 16 ~~~~~~~~~~~g----~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG----VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE----EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC----eEEEECCCCCChhHHHHHHHH
Confidence 456677777654 899999999999999999997
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.43 E-value=0.0016 Score=60.24 Aligned_cols=24 Identities=33% Similarity=0.715 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhcCCC
Q 012357 69 VGVAGPSGAGKTVFTEKVLNFMPS 92 (465)
Q Consensus 69 igIiGpSGSGKSTL~r~L~gllP~ 92 (465)
|.|+||||||||||++.|....|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC
Confidence 669999999999999999877764
No 253
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.41 E-value=0.0016 Score=58.50 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEEC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMD 99 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll--P~sG~I~lD 99 (465)
+|+|.|++||||||+++.|+..+ ...-.+..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 79999999999999999998865 233345544
No 254
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.40 E-value=0.0013 Score=60.01 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC-C---CeeEEEEC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMD 99 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll-P---~sG~I~lD 99 (465)
.+++|+|++|||||||+..|...+ + ..+.|..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 489999999999999999999876 2 34555544
No 255
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.40 E-value=0.0017 Score=59.37 Aligned_cols=23 Identities=13% Similarity=0.414 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|+|.|++||||||+++.|+..+
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998765
No 256
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.40 E-value=0.0011 Score=65.39 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.++|+|++|||||||++.|.|.-
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 89999999999999999999874
No 257
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.39 E-value=0.0016 Score=59.50 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.6
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..+.+|+|.|++||||||+++.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345699999999999999999998765
No 258
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.38 E-value=0.0018 Score=61.77 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=23.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++.+|+|.|++||||||+++.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999998755
No 259
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.36 E-value=0.0016 Score=58.32 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|.|.|++||||||+++.|+..+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998765
No 260
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.36 E-value=0.0017 Score=57.84 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.++|+|++|+|||||++.+.+..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999863
No 261
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.36 E-value=0.0017 Score=59.85 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997665
No 262
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.34 E-value=0.002 Score=66.39 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=28.8
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhc-----------C-CCeeEEEECC
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNF-----------M-PSIAVITMDN 100 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gl-----------l-P~sG~I~lDg 100 (465)
..+. .+||+|++|+|||||+++|.+. . |..|.+.+.+
T Consensus 20 ~~~~---kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 20 GTSL---KIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp SSCC---CEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred cCCC---EEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4455 7999999999999999999987 4 5567666655
No 263
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.32 E-value=0.001 Score=67.01 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=26.1
Q ss_pred EEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 50 ~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
..+|+++++.++ .|+|+|++|||||||++.|.|.
T Consensus 24 ~~~l~~i~~~lp------~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP------AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC------EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC------EEEEECCCCCcHHHHHHHHhCC
Confidence 347778887776 5999999999999999999994
No 264
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.31 E-value=0.0015 Score=58.77 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|+|+|++||||||+++.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998865
No 265
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.30 E-value=0.0031 Score=63.35 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCee
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~ 102 (465)
.++.|+||+|||||||++.|+..+ ..-.|..|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l-~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL-PCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS-CEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CCcEEeccchh
Confidence 389999999999999999999987 35578888753
No 266
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.29 E-value=0.0019 Score=60.45 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+|.|.|++||||||+++.|+..+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 389999999999999999999766
No 267
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.26 E-value=0.0022 Score=56.53 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999865
No 268
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.26 E-value=0.0021 Score=59.41 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998766
No 269
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.24 E-value=0.0019 Score=57.09 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|+|.|++||||||+++.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999865
No 270
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.23 E-value=0.002 Score=57.77 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+-++|+|++|+|||||++.+.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999863
No 271
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.22 E-value=0.0025 Score=62.54 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=29.6
Q ss_pred EecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg 100 (465)
+..+. .+.|.||+|+|||||+++|++.. ..+.+.+++
T Consensus 46 ~~~~~---~vLL~Gp~GtGKT~la~ala~~~-~~~~i~v~~ 82 (301)
T 3cf0_A 46 MTPSK---GVLFYGPPGCGKTLLAKAIANEC-QANFISIKG 82 (301)
T ss_dssp CCCCS---EEEEECSSSSSHHHHHHHHHHHT-TCEEEEECH
T ss_pred CCCCc---eEEEECCCCcCHHHHHHHHHHHh-CCCEEEEEh
Confidence 35566 89999999999999999999987 345565554
No 272
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.22 E-value=0.00082 Score=71.30 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=28.4
Q ss_pred EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 52 aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.++++++.+.+| +.+|+|+||||||||+.+|..++
T Consensus 50 ~~~~~~l~f~~g----~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQLELELGGG----FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSCEEEECCCS----EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC----eEEEEcCCCCCHHHHHHHHHHHh
Confidence 445666666654 79999999999999999997774
No 273
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.16 E-value=0.0041 Score=62.33 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~ 101 (465)
.++.|+||+|||||||+..|+..++ .-.|+.|..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN-GEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT-EEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc-cceeecCcc
Confidence 3899999999999999999998874 457787775
No 274
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.15 E-value=0.0029 Score=56.04 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+++|.|+.||||||+++.|+..+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998865
No 275
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.14 E-value=0.0026 Score=59.03 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+|.|.|++||||||+++.|+..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999998876
No 276
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.12 E-value=0.0021 Score=59.83 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+|.|.|++||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998766
No 277
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.12 E-value=0.0035 Score=58.96 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.6
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.+-|+|+|++|+|||||++.|.|..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345689999999999999999999976
No 278
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.09 E-value=0.0029 Score=61.53 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEEC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lD 99 (465)
|.+|.|.|++||||||+++.|+..++..-.|..|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 3489999999999999999999754333334333
No 279
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.09 E-value=0.0045 Score=61.90 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=29.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~ 101 (465)
+.++.|+||+|||||||+..|+..++ .-.|+.|+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP-VELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC-EEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC-CcEEecccc
Confidence 44899999999999999999998874 457788875
No 280
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.01 E-value=0.0043 Score=58.90 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCee
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~~ 102 (465)
-+.|.||+|+|||||+++|++... .-.+.+++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~-~~~~~i~~~~ 80 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK-VPFFTISGSD 80 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-CCEEEECSCS
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC-CCEEEEeHHH
Confidence 488999999999999999999872 1245565543
No 281
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.01 E-value=0.0023 Score=66.76 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lDg 100 (465)
+.+++++|++||||||++..|+..+ +..+.|.+-+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4599999999999999999999988 5555555433
No 282
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.00 E-value=0.0036 Score=60.14 Aligned_cols=24 Identities=25% Similarity=0.638 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+|.|+|++||||||+++.|+..+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999864
No 283
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.98 E-value=0.0044 Score=62.77 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=23.8
Q ss_pred eeeeEEecCccceEEEEEcCCCCcHHHHHHHHHh
Q 012357 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (465)
Q Consensus 55 ~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~g 88 (465)
+..+.+.+ . +..|+|+|||||||++.+|.-
T Consensus 18 ~~~i~f~~-g---l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 18 NSRIKFEK-G---IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEECCS-E---EEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEecCC-C---eEEEECCCCCCHHHHHHHHHH
Confidence 34444444 4 899999999999999999975
No 284
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.96 E-value=0.003 Score=58.33 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+++|.|++||||||+++.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3489999999999999999999876
No 285
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.96 E-value=0.0097 Score=59.45 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=32.0
Q ss_pred CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 48 g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.....+++..+.+ .|. -+.|.|+||+||||++..|.+.
T Consensus 130 ~~~~~~H~~~v~~-~g~---~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 130 ARTTSLHGVLVDV-YGV---GVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp CEEEEEESEEEEE-TTE---EEEEEESTTSSHHHHHHHHHHT
T ss_pred ccceeeeEEEEEE-CCE---EEEEEeCCCCCHHHHHHHHHhc
Confidence 3457888888887 566 7999999999999999999873
No 286
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.90 E-value=0.004 Score=60.01 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.++|+|++|||||||++.|.|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999999875
No 287
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.85 E-value=0.0066 Score=61.31 Aligned_cols=33 Identities=27% Similarity=0.544 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~ 101 (465)
++.|+||+|||||||+..|+..++ .-.|+.|..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~-~eiIs~Ds~ 74 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP-LEVINSDKM 74 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC-EEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC-CcEEccccc
Confidence 899999999999999999999883 457777776
No 288
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.82 E-value=0.0054 Score=52.71 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++-++|+|++|+|||||++.+.+-.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999988643
No 289
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.82 E-value=0.0044 Score=69.45 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=31.7
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~ 101 (465)
.+.+++ .+.|.||||+|||||+++|++.++. -.+.+++.
T Consensus 234 ~i~~~~---~vLL~Gp~GtGKTtLarala~~l~~-~~i~v~~~ 272 (806)
T 1ypw_A 234 GVKPPR---GILLYGPPGTGKTLIARAVANETGA-FFFLINGP 272 (806)
T ss_dssp CCCCCC---EEEECSCTTSSHHHHHHHHHHTTTC-EEEEEEHH
T ss_pred CCCCCC---eEEEECcCCCCHHHHHHHHHHHcCC-cEEEEEch
Confidence 567788 8999999999999999999999832 24666654
No 290
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.82 E-value=0.0046 Score=65.49 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=48.2
Q ss_pred chhhhhHhHHhhhhccCc--ceeeeeeeecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcE
Q 012357 159 SRIVIIEGIYALSEKLRP--LIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAF 225 (465)
Q Consensus 159 qRVlIaegl~aL~d~~~p--~LdllDEpts~LD~~l~rr---Ilrdl~e~G~TI------~~vi~~i~d~V~~m~~G~ 225 (465)
|||.||+++ ...| .++++||||+++|+..... +++++.+ |.|+ ++++. +||++++|+++.
T Consensus 404 qrv~la~~l-----~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~~~~~~~ 474 (517)
T 4ad8_A 404 SRVMLAVST-----VLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHYKVEKQV 474 (517)
T ss_dssp HHHHHHHHH-----HHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEEEEECCE
T ss_pred HHHHHHHHH-----HhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEEEeccc
Confidence 999999988 6677 9999999999999986554 4566655 7777 66665 699999997764
No 291
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.0049 Score=55.10 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.++|+|++|||||||++.+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999999875
No 292
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.78 E-value=0.0047 Score=57.79 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 293
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.77 E-value=0.0054 Score=52.54 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+-++++|++|||||||++.+.+-.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998754
No 294
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.75 E-value=0.0055 Score=63.34 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg 100 (465)
.+++|+||+|||||||+..|+..++ ...|+.|+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~-~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN-GEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT-EEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC-CeEeecCc
Confidence 4899999999999999999998874 34788777
No 295
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.75 E-value=0.0084 Score=59.55 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=31.1
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHHhcC--C------CeeEEEECC
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--P------SIAVITMDN 100 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--P------~sG~I~lDg 100 (465)
-+++|+ ++.|.|++|||||||+..++... | ..+.+.++.
T Consensus 103 Gl~~G~---i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~ 149 (324)
T 2z43_A 103 GIETRT---MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDT 149 (324)
T ss_dssp SEETTS---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred CCCCCc---EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 468899 99999999999999999988754 5 344555554
No 296
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.74 E-value=0.006 Score=52.70 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|||||||++.+.+-.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998754
No 297
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.72 E-value=0.0062 Score=52.38 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++-++|+|++|+|||||++.+.+-.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568999999999999999998753
No 298
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.71 E-value=0.0064 Score=53.74 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+++-++|+|++|+|||||++.+.+-.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC
Confidence 35679999999999999999998753
No 299
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.68 E-value=0.0072 Score=53.46 Aligned_cols=27 Identities=26% Similarity=0.158 Sum_probs=23.2
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+..+-++|+|++|+|||||++.+.+-.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCC
Confidence 445689999999999999999998753
No 300
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.68 E-value=0.0066 Score=53.19 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|||||||++.+.+-.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 5679999999999999999998754
No 301
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0067 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+-++|+|++|+|||||++.+.+-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999874
No 302
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.66 E-value=0.0052 Score=56.83 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998765
No 303
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.66 E-value=0.0067 Score=52.34 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++-++|+|++|+|||||++.+.+-.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998753
No 304
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.65 E-value=0.0068 Score=52.36 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++-++|+|++|+|||||++.+.+-.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998754
No 305
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.65 E-value=0.013 Score=52.52 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
+.+-++|+|++|+|||||++.+.+-
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999876654
No 306
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.62 E-value=0.0064 Score=53.28 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++.++|+|++|+|||||++.+.+-.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4479999999999999999998753
No 307
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.61 E-value=0.0073 Score=52.28 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998764
No 308
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.61 E-value=0.0069 Score=52.81 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++-++|+|++|+|||||++.+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 4579999999999999999998754
No 309
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.60 E-value=0.0064 Score=57.35 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcCC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFMP 91 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllP 91 (465)
+.+|+|.|+.||||||+++.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998874
No 310
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.58 E-value=0.0076 Score=52.28 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 5679999999999999999998753
No 311
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=95.58 E-value=0.014 Score=53.70 Aligned_cols=141 Identities=14% Similarity=0.210 Sum_probs=94.3
Q ss_pred HHHHHHHhccccc-c--cccceeeeccCCCCCCchhhhhhhhhcCC--CceEEEEEeeecCCCCeEeeeeeeeee-eeeE
Q 012357 262 VDEIKAVMSKEHT-E--TTEETYDIYLLPPGEDPDACQSYLRMRNR--DGKYNLMFEEWVTDSPFIISPRITFEV-SVRL 335 (465)
Q Consensus 262 ~~~i~~~l~~~~~-~--~~~~~~~i~~~p~~~~~~~~~~~i~~~~~--~~~~~l~~~~~~~~~p~i~~~~~~f~v-~~~i 335 (465)
.+.+...|..... . ......|+|.-.|.........++|.|.. ++...+++.++..++- . +++| +...
T Consensus 22 ~~~~~~~L~~~~~~~~~~~~~q~d~YfDtp~~~L~~~~~aLRiR~~~~~~~~~~t~Kgp~~~~~-~-----e~~v~d~~~ 95 (189)
T 2aca_A 22 HDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVKGPEADRC-E-----ATNITKLDS 95 (189)
T ss_dssp HHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCHHHHTTCEEEEEEEETTTEEEEEEECSSTTBE-E-----EEEBSCHHH
T ss_pred HHHHHHHHHhcCCcccCcceEEEEEEEeCCCcchhhCCeEEEEEEecCCCcEEEEEcCCCcCce-E-----EEecCCHHH
Confidence 4555666655433 1 12234588887777766555667787753 3456666666655432 2 2222 1112
Q ss_pred ecccc-ccCcEEEEEEEeccceeecCcEEEEehhhhhcCcceEEEec-----cc----hhHHHHHhhhhcCccC-ccchh
Q 012357 336 LGGLM-ALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQG-----RD----RLYVKYVGEQLGLDGS-YVPRT 404 (465)
Q Consensus 336 l~gl~-~~g~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~----~~~~~~~~~~~~~~~~-~~~~~ 404 (465)
+...| .+|+.+...+.-.-..|.-+.+.|.+|+.+.++ +|+-|-- .+ +..+.+.+.+|||... -+++|
T Consensus 96 ~~~~L~~lgl~~~~~~~k~R~~~~~~~~~v~lD~~~~lg-~f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~s 174 (189)
T 2aca_A 96 AQSMLENMGYEVIQCSKKIRSIFFVGEFHITLDFLDGFG-HFAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRS 174 (189)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSC
T ss_pred HHHHHHHcCCcEEEEEEEEEEEEEECCEEEEEEcccCCe-eEEEEEEEcCCccchHHHHHHHHHHHHHcCcCccccchhh
Confidence 23333 389999999988888888899999999999887 7866652 22 5688899999999865 78999
Q ss_pred HHHHH
Q 012357 405 YIEQI 409 (465)
Q Consensus 405 ~~~~~ 409 (465)
|+|++
T Consensus 175 Y~~ll 179 (189)
T 2aca_A 175 YKEIL 179 (189)
T ss_dssp TTTSS
T ss_pred HHHHH
Confidence 99764
No 312
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.57 E-value=0.0072 Score=52.89 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
+.+-++|+|++|+|||||++.+.+-
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999876
No 313
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.56 E-value=0.0098 Score=59.70 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=25.5
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
-+++|+ ++.|.|++|||||||+..++..
T Consensus 118 Gl~~G~---i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMA---ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSE---EEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCe---EEEEECCCCCCHHHHHHHHHHH
Confidence 468899 9999999999999999998886
No 314
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.53 E-value=0.0055 Score=65.22 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=32.7
Q ss_pred eeeeEEecCccceEEEEEcCCCCcHHHHHHHHHh--cC-CCeeEEEECCee
Q 012357 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN--FM-PSIAVITMDNYN 102 (465)
Q Consensus 55 ~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~g--ll-P~sG~I~lDg~~ 102 (465)
.+.+.+.++. .+.|+|.+||||||+++.|.. +. ++.+.+.+.+.+
T Consensus 159 pv~ldL~~~p---HlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD 206 (512)
T 2ius_A 159 PVVADLAKMP---HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID 206 (512)
T ss_dssp EEEEEGGGSC---SEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred EEEEEcccCc---eEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence 3567778888 899999999999999999875 33 344444444433
No 315
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.51 E-value=0.0082 Score=53.50 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=23.2
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 63 Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
|-+++-|+++|.+|+|||||++.+.+-.
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCC
Confidence 3445689999999999999999998753
No 316
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.51 E-value=0.0075 Score=57.01 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++.+|.|+||.||||+|.++.|+..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34599999999999999999999876
No 317
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.50 E-value=0.0083 Score=52.50 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..+-++|+|++|+|||||++.+.+-.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 35679999999999999999998754
No 318
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.50 E-value=0.0068 Score=56.28 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEEC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lD 99 (465)
..|.|.|+.||||||+++.|+..+ ..-.|..|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d 37 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY-GLAHLSTG 37 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CceEEehh
Confidence 489999999999999999998866 22344444
No 319
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.49 E-value=0.0083 Score=53.26 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|+.|+|||||++.+.+-.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4679999999999999999999873
No 320
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.48 E-value=0.008 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+-++|+|++|+|||||++.+.+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999998654
No 321
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.48 E-value=0.0079 Score=52.04 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++-++|+|++|+|||||++.+.+--
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568999999999999999998754
No 322
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.48 E-value=0.0087 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
-++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 323
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.48 E-value=0.0037 Score=68.56 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=28.5
Q ss_pred eEEecCccceEEEEEcCCCCcHHHHHHHHHhcC-C--CeeEE
Q 012357 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVI 96 (465)
Q Consensus 58 L~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-P--~sG~I 96 (465)
+.++++. .++|+|++|||||||++.|.+.. + ..|.|
T Consensus 4 ~~~~~~~---~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 4 EGGAMIR---TVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp --CCCEE---EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CccCCCc---EEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 3456677 99999999999999999999775 3 56666
No 324
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.48 E-value=0.0078 Score=55.30 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
...++|+|++|||||||++.|.+..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998764
No 325
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.47 E-value=0.0086 Score=51.69 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
++-++|+|++|+|||||++.+.+-
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999874
No 326
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.46 E-value=0.0087 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
++-++|+|++|+|||||++.+.+-
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999764
No 327
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.45 E-value=0.0068 Score=54.18 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=22.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
+.+.++|+|++|+|||||++.+.+-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999875
No 328
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.43 E-value=0.0072 Score=52.88 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..+-++|+|++|+|||||++.+.+-.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 35679999999999999999998653
No 329
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.40 E-value=0.0079 Score=56.50 Aligned_cols=24 Identities=29% Similarity=0.435 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..|.|.|+.||||||+++.|+..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999766
No 330
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.38 E-value=0.01 Score=54.53 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=26.3
Q ss_pred EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHh
Q 012357 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (465)
Q Consensus 51 ~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~g 88 (465)
..+++.-+.+. |. -+.|.|+||+|||||+..|..
T Consensus 5 ~~lHas~v~v~-G~---gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVID-KM---GVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEET-TE---EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEEC-CE---EEEEEcCCCCCHHHHHHHHHH
Confidence 45555555554 55 699999999999999988876
No 331
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.37 E-value=0.011 Score=60.26 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gl 89 (465)
.++|+|.+|+|||||++.|.+.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999983
No 332
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.37 E-value=0.01 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+-++|+|++|+|||||++.+.+-
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 567999999999999999999865
No 333
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.34 E-value=0.0068 Score=52.48 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+-++|+|++|+|||||++.+.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEEECCCCCCHHHHHHHHcCcc
Confidence 468999999999999999998754
No 334
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.33 E-value=0.01 Score=53.00 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
+.+-++|+|++|+|||||++.+.+-
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 4567999999999999999999874
No 335
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.33 E-value=0.007 Score=61.47 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEE
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM 98 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-P~sG~I~l 98 (465)
-++|+|+||||||||++.|.... +..+.|.+
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 68999999999999999999877 54444444
No 336
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.32 E-value=0.011 Score=52.80 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..+-++|+|++|+|||||++.+.+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 35679999999999999999998854
No 337
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.30 E-value=0.0098 Score=51.91 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998643
No 338
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.29 E-value=0.0083 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|||||||++.+.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4579999999999999999998763
No 339
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.27 E-value=0.0079 Score=53.72 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=22.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..+-++|+|++|+|||||++.+.+..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 340
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.26 E-value=0.011 Score=51.86 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=23.1
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++.+-++|+|++|+|||||++.+.+-.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC
Confidence 345679999999999999999998754
No 341
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.24 E-value=0.011 Score=51.93 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-|+|+|++|+|||||++.+.+-.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4579999999999999999998753
No 342
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.24 E-value=0.01 Score=56.54 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.3
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.+-|+|+|.+|+|||||++.|.|.-
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCC
Confidence 346689999999999999999999865
No 343
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.23 E-value=0.0083 Score=61.87 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+|.|+|++||||||+++.|+..+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4599999999999999999998755
No 344
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.21 E-value=0.0061 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.3
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHh
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLN 88 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~g 88 (465)
.+++-++|+|++|||||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999998864
No 345
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.18 E-value=0.012 Score=51.32 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..+-++|+|++|+|||||++.+.+-.
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 35679999999999999999998754
No 346
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.18 E-value=0.011 Score=56.24 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=22.7
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.+.|+|+|++|||||||++.|.+.-
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998753
No 347
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.17 E-value=0.0071 Score=57.89 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=24.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcCCC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFMPS 92 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gllP~ 92 (465)
++.+|+|.|+.||||||+++.|+..++.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~ 50 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCED 50 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3459999999999999999999988743
No 348
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.15 E-value=0.012 Score=54.04 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.|.||+|+|||||++.++..+
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998876
No 349
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.15 E-value=0.011 Score=57.56 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.++|+|++|+|||||++.+.|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 3579999999999999999999853
No 350
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.14 E-value=0.0086 Score=58.03 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CCee
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-P~sG 94 (465)
.+.|.||+|+||||++++|++.+ +..+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~ 76 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEE 76 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence 79999999999999999999988 5443
No 351
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.13 E-value=0.013 Score=51.44 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++-++|+|++|+|||||++.+.+-.
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 5679999999999999999998753
No 352
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.10 E-value=0.013 Score=52.74 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+-|+|+|++|+|||||++.+.+-
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999865
No 353
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.10 E-value=0.012 Score=51.96 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998753
No 354
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.09 E-value=0.012 Score=53.90 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=22.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+.++|+|++|+|||||++.+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999865
No 355
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.08 E-value=0.012 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.|.||+|+|||||+++++...
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78899999999999999999876
No 356
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.07 E-value=0.013 Score=52.73 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..+-++|+|++|+|||||++.+.+-.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35679999999999999999998764
No 357
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.07 E-value=0.02 Score=53.71 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=31.2
Q ss_pred EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 012357 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (465)
Q Consensus 52 aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg~ 101 (465)
.+++.-+.+ .|. .+.|+||+|||||||+..|+.... -.|+-|..
T Consensus 24 ~lHa~~v~~-~g~---~ilI~GpsGsGKStLA~~La~~g~--~iIsdDs~ 67 (205)
T 2qmh_A 24 SMHGVLVDI-YGL---GVLITGDSGVGKSETALELVQRGH--RLIADDRV 67 (205)
T ss_dssp CEESEEEEE-TTE---EEEEECCCTTTTHHHHHHHHTTTC--EEEESSEE
T ss_pred eeeEEEEEE-CCE---EEEEECCCCCCHHHHHHHHHHhCC--eEEecchh
Confidence 455555554 356 799999999999999999987653 34444443
No 358
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.05 E-value=0.0062 Score=63.43 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=32.8
Q ss_pred EEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 51 ~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..|+++..-+++|+ ++.|+|++|+|||||+..+++..
T Consensus 191 ~~LD~~~gGl~~G~---liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 191 TELDRMTSGFQRSD---LIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHHSSBCTTC---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCC---EEEEECCCCCCHHHHHHHHHHHH
Confidence 45677776789999 99999999999999999999877
No 359
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.04 E-value=0.013 Score=51.64 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
++-++|+|++|+|||||++.+.+-
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999999843
No 360
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.04 E-value=0.0094 Score=58.91 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.|.||+|+|||||++.+++.+
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999877
No 361
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.03 E-value=0.014 Score=51.52 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.5
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+-++|+|++|+|||||++.+.+-.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 35679999999999999999998653
No 362
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.02 E-value=0.0087 Score=60.61 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
-++|+|++|+|||||++.|.+..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 36999999999999999998765
No 363
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.02 E-value=0.012 Score=55.02 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
++.|+||.||||+|.++.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999876
No 364
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.02 E-value=0.013 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
+.+-++|+|++|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999864
No 365
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.01 E-value=0.012 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
-++|+|++|+|||||++.+.+-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999997643
No 366
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.00 E-value=0.014 Score=51.98 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.1
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.++-++|+|++|+|||||++.+.+-.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCC
Confidence 345679999999999999999998754
No 367
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.99 E-value=0.015 Score=51.23 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+-++|+|++|+|||||++.+.+-
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999864
No 368
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.99 E-value=0.0096 Score=59.92 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++.++|+|++|+|||||++.|.+..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4489999999999999999998865
No 369
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.98 E-value=0.015 Score=51.68 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=23.7
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+..+-++|+|++|+|||||++.+.+..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence 345679999999999999999999876
No 370
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.97 E-value=0.011 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
-++|+|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998754
No 371
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.97 E-value=0.015 Score=51.88 Aligned_cols=26 Identities=31% Similarity=0.257 Sum_probs=22.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+-|+|+|++|+|||||++.+.+-.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 35679999999999999999998643
No 372
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.96 E-value=0.014 Score=53.84 Aligned_cols=25 Identities=28% Similarity=0.616 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
...++|+|.+|+|||||++.+....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999988764
No 373
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.96 E-value=0.016 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.|.||+|+|||||++.++..+
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998876
No 374
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.95 E-value=0.014 Score=52.38 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 5579999999999999999998754
No 375
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=94.93 E-value=0.0049 Score=51.76 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=34.4
Q ss_pred CceEEEEEeeecCCCCeEeeeeeeeeeeeeEeccccc
Q 012357 305 DGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMA 341 (465)
Q Consensus 305 ~~~~~l~~~~~~~~~p~i~~~~~~f~v~~~il~gl~~ 341 (465)
+.+++|.|.|..+++|+|++..++|+|++|||+|.+.
T Consensus 21 ~~lvrL~f~g~~~~~PiIs~l~~~~~v~vnIL~g~I~ 57 (106)
T 3dhx_A 21 VPMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMD 57 (106)
T ss_dssp EEEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEE
T ss_pred ceEEEEEEcCCccChhHHHHHHHHHCCCEEEEEEEeE
Confidence 4689999999999999999999999999999999753
No 376
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.92 E-value=0.016 Score=51.61 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=22.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..+-++|+|++|+|||||++.+.+..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 35679999999999999999998754
No 377
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.88 E-value=0.015 Score=51.72 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 378
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.87 E-value=0.014 Score=56.48 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++.++|+|.+|||||||++.|.|..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999999864
No 379
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.87 E-value=0.018 Score=51.53 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..+-++|+|++|+|||||++.+.+-.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 35679999999999999999998754
No 380
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.86 E-value=0.015 Score=52.58 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|.+|+|||||++.+.+-.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4579999999999999999998864
No 381
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.85 E-value=0.008 Score=55.10 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
++.++|+|.+|||||||++.|.+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457999999999999999999876
No 382
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.85 E-value=0.017 Score=51.38 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998754
No 383
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.84 E-value=0.016 Score=56.00 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
-+.|.||+|+|||||++++++..
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 78999999999999999999987
No 384
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.82 E-value=0.016 Score=64.63 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=23.7
Q ss_pred EecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+..|+ .+.|+||+||||||++..+....
T Consensus 106 l~~~~---~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 106 YQNNQ---IMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp HHHCS---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred HhCCC---eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788 99999999999999888886554
No 385
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.81 E-value=0.018 Score=51.65 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=23.4
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 63 Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
....+-++|+|++|+|||||++.+.+-.
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3446789999999999999999998753
No 386
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.78 E-value=0.017 Score=51.51 Aligned_cols=25 Identities=24% Similarity=0.072 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
+.+-++|+|++|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999854
No 387
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.77 E-value=0.018 Score=57.26 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.|.||+|+|||||++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999987
No 388
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.76 E-value=0.018 Score=51.51 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|+.|+|||||++.+.+-.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998653
No 389
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.75 E-value=0.01 Score=64.05 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=31.1
Q ss_pred cCccceEEEEEcCCCCcHHHHHHHHHhcCCCee---EEEECCee
Q 012357 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIA---VITMDNYN 102 (465)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG---~I~lDg~~ 102 (465)
.|.++.+|.|.|.+||||||+++.|...+...| .+.+|+-.
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 345567999999999999999999998773223 56666543
No 390
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.71 E-value=0.017 Score=50.63 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998654
No 391
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.69 E-value=0.019 Score=51.83 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=22.4
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++.+-|+|+|++|+|||||++.+.+-.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 345689999999999999999998754
No 392
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.67 E-value=0.016 Score=51.49 Aligned_cols=26 Identities=23% Similarity=0.044 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+-++|+|++|+|||||++.+.+-.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC
Confidence 35679999999999999999998753
No 393
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.67 E-value=0.024 Score=57.03 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++.+++|+|+.|+|||||+..|+..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998775
No 394
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.65 E-value=0.02 Score=51.44 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+-++|+|++|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999875
No 395
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.63 E-value=0.019 Score=55.20 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.++|+|.+|+|||||++.|.|..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 4579999999999999999999854
No 396
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.62 E-value=0.017 Score=51.62 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=22.5
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
....-|+|+|.+|+|||||++.+.+-.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998753
No 397
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.62 E-value=0.02 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998754
No 398
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.62 E-value=0.018 Score=53.48 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.0
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.+-|+|+|++|+|||||++.+.+-.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998753
No 399
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.61 E-value=0.013 Score=52.29 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=21.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+-++|+|++|+|||||++.+.+..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999987653
No 400
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.60 E-value=0.02 Score=51.74 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-|+|+|++|+|||||++.+.+--
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4579999999999999999998653
No 401
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.59 E-value=0.014 Score=53.04 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=21.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
..+-++|+|++|+|||||++.+.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhc
Confidence 3567999999999999999998754
No 402
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.57 E-value=0.02 Score=51.85 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998753
No 403
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.56 E-value=0.019 Score=52.10 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=21.3
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..+-|+|+|++|+|||||++.+.+-.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34579999999999999999998653
No 404
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.55 E-value=0.017 Score=50.66 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4569999999999999999998753
No 405
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.54 E-value=0.016 Score=55.90 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+-++|+|.+|+|||||++.|.+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998765
No 406
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.54 E-value=0.019 Score=52.16 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=24.1
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..+..+..+.|.||+|+|||||++.++..+
T Consensus 40 ~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 40 SLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334333378999999999999999998766
No 407
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.54 E-value=0.019 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.++|+|++|+|||||++.+.+-.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998754
No 408
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.53 E-value=0.02 Score=54.87 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.5
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.+.++|+|.+|+|||||++.|.+.-
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999999864
No 409
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.52 E-value=0.02 Score=52.37 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4579999999999999999988653
No 410
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.50 E-value=0.02 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
..+-++|+|++|+|||||++.+.+-
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3557999999999999999999764
No 411
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.50 E-value=0.021 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-|+|+|++|+|||||++.+.+-.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4479999999999999999998765
No 412
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.47 E-value=0.026 Score=52.45 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.4
Q ss_pred EecCccceEEEEEcCCCCcHHHHHHHHH
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFTEKVL 87 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~ 87 (465)
+++|+ ++.|.|++|+|||||+..++
T Consensus 27 l~~G~---l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGT---TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTC---EEEEECCTTSSHHHHHHHHH
T ss_pred CCCCe---EEEEEeCCCCCHHHHHHHHH
Confidence 48899 99999999999999987654
No 413
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.47 E-value=0.021 Score=56.32 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.++|+|.+|+|||||++.|.|.-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999863
No 414
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.43 E-value=0.024 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
..+-|+|+|++|+|||||++.+.+-
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3567999999999999999988764
No 415
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.42 E-value=0.023 Score=54.52 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=23.8
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 63 Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+.+.++++|.+|+|||||++.|.+-.
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3446689999999999999999998754
No 416
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.42 E-value=0.021 Score=52.37 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
+++-++|+|++|+|||||++.+.+-
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3567999999999999999999864
No 417
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.41 E-value=0.022 Score=56.18 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+-.++|+|.+|||||||++.|.|.-
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3489999999999999999999863
No 418
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.41 E-value=0.023 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|.|.|++||||||+++.|...+
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998877
No 419
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.39 E-value=0.023 Score=51.69 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++-|+|+|++|+|||||++.+.+-.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998754
No 420
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.39 E-value=0.02 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.|.||+|+|||||++.++..+
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 421
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.38 E-value=0.023 Score=51.04 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+-++|+|++|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999864
No 422
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.35 E-value=0.024 Score=54.22 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.5
Q ss_pred cCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|. +|.|.|++||||||+++.|...+
T Consensus 26 ~~~---~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAK---FIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCC---EEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCe---EEEEECCCCCCHHHHHHHHHHHH
Confidence 456 99999999999999999998877
No 423
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=94.34 E-value=0.0087 Score=49.50 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=34.9
Q ss_pred CCceEEEEEeeecCCCCeEeeeeeeeeeeeeEeccccc
Q 012357 304 RDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMA 341 (465)
Q Consensus 304 ~~~~~~l~~~~~~~~~p~i~~~~~~f~v~~~il~gl~~ 341 (465)
.+.+++|.|.|..+.+|+|++..++|+|.+|||+|.+.
T Consensus 22 ~~~lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~ 59 (100)
T 2qsw_A 22 NGKIVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQ 59 (100)
T ss_dssp SSEEEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEE
T ss_pred CCEEEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeece
Confidence 45689999999999999999999999999999999743
No 424
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.33 E-value=0.024 Score=54.31 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
-+.|.||+|+|||||++.++..+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 68999999999999999999887
No 425
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.31 E-value=0.021 Score=54.90 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.++|+|.+|||||||++.|.|.-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999873
No 426
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.27 E-value=0.021 Score=55.57 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..++|+|..|||||||++.|.|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999874
No 427
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.27 E-value=0.026 Score=51.52 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=22.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..+-|+|+|++|+|||||++.+.+-.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998754
No 428
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.25 E-value=0.032 Score=56.50 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=30.1
Q ss_pred EecCccceEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECC
Q 012357 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN 100 (465)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--P~sG~I~lDg 100 (465)
+++|. ++.|.|++|+|||||+..++... .....+.++.
T Consensus 60 l~~G~---ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGR---IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTS---EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 68899 99999999999999998887654 3334555554
No 429
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.24 E-value=0.022 Score=51.30 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=22.6
Q ss_pred cCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++++.+-+.|+|.+|+|||||++.+.+..
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 34456789999999999999999988865
No 430
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.23 E-value=0.021 Score=51.50 Aligned_cols=26 Identities=23% Similarity=0.130 Sum_probs=22.0
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+.+-++|+|++|+|||||++.+.+-
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999998654
No 431
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.23 E-value=0.022 Score=59.43 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.6
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|.+++++|++||||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46699999999999999999999877
No 432
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.23 E-value=0.021 Score=58.11 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+||+|++|+|||||++.|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
No 433
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.18 E-value=0.027 Score=51.65 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998864
No 434
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.17 E-value=0.028 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
-+.|.||+|+||||+++.++...
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999876
No 435
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.17 E-value=0.017 Score=50.89 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=10.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+-++|+|++|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999988764
No 436
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.15 E-value=0.027 Score=55.53 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=24.9
Q ss_pred EEecCccceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
-+++|+ ++.|.|++|+|||||+..++..
T Consensus 94 Gl~~g~---i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQS---VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTE---EEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCe---EEEEECCCCCCHHHHHHHHHHH
Confidence 358899 9999999999999999988764
No 437
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.14 E-value=0.028 Score=50.90 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++-++|+|++|+|||||++.+.+-.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3469999999999999999998753
No 438
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.13 E-value=0.029 Score=50.14 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998753
No 439
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.12 E-value=0.03 Score=50.61 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+-++|+|.+|+|||||++.+.+.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999863
No 440
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.10 E-value=0.032 Score=52.54 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=24.8
Q ss_pred cCccceEEEEEcCCCCcHHHHHHHHHhcCCC
Q 012357 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPS 92 (465)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~ 92 (465)
+|. +|.+.|++||||||+++.|...++.
T Consensus 4 ~g~---~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGK---LILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCC---EEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCe---EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 466 9999999999999999999998843
No 441
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=94.07 E-value=0.019 Score=52.23 Aligned_cols=63 Identities=11% Similarity=-0.015 Sum_probs=41.7
Q ss_pred cchhhhhHhHHhhhhccCcceeeeeeeecCccHHHHHHHHHHHHH---cCCCH----HHHHHHHhceEEEc
Q 012357 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR---VGQEP----EEIIHQISETVYPM 221 (465)
Q Consensus 158 ~qRVlIaegl~aL~d~~~p~LdllDEpts~LD~~l~rrIlrdl~e---~G~TI----~~vi~~i~d~V~~m 221 (465)
.||+.|++++.. .+...|.+.++||||++||+...+++.+-+.+ .+..+ ...+..+||+++.+
T Consensus 70 kqr~ala~~la~-~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v 139 (173)
T 3kta_B 70 KALTALAFVFAI-QKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGV 139 (173)
T ss_dssp HHHHHHHHHHHH-HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHh-cccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEE
Confidence 388999998832 22233589999999999999987776655543 22222 22344678887754
No 442
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.07 E-value=0.029 Score=51.04 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
+.+-++|+|++|+|||||++.+.+-
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3568999999999999999998864
No 443
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.06 E-value=0.023 Score=53.99 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=21.2
Q ss_pred ecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+|- +|.|.|++||||||+++.|...+
T Consensus 23 ~~g~---~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARGK---FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCC---EEEEECCC---CHHHHHHHHHHH
T ss_pred cCCe---EEEEECCCCCCHHHHHHHHHHHH
Confidence 3566 99999999999999999998877
No 444
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.02 E-value=0.027 Score=52.09 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+|+|.|+.||||||+++.|+..+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 389999999999999999999987
No 445
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.99 E-value=0.032 Score=52.36 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|.|-|++||||||+++.|...+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999887
No 446
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.99 E-value=0.026 Score=55.44 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.|.||+|+|||||++.++..+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 68899999999999999999877
No 447
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.96 E-value=0.031 Score=48.51 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
-+.|.|++|+|||++++.|....
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999999876
No 448
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.94 E-value=0.032 Score=52.89 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+|.|.|++||||||+++.|...+
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3499999999999999999999877
No 449
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.92 E-value=0.027 Score=55.01 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.0
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.|..+.|.||+|+|||+|+++|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578899999999999999999876
No 450
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.91 E-value=0.035 Score=60.48 Aligned_cols=39 Identities=31% Similarity=0.331 Sum_probs=30.8
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhcCC--CeeEEEECCeec
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYND 103 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gllP--~sG~I~lDg~~~ 103 (465)
++.+|.|.|.+||||||+++.|...+. ....+.+|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 455999999999999999999998762 334677776543
No 451
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.90 E-value=0.033 Score=50.51 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 4579999999999999999998654
No 452
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.87 E-value=0.026 Score=51.93 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q 012357 69 VGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 69 igIiGpSGSGKSTL~r~L~gl 89 (465)
+.|+|++||||||++..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 679999999999999998754
No 453
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.82 E-value=0.035 Score=54.93 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=29.5
Q ss_pred EEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 52 aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.|+.+.--+.+|+ ++.|.|++|+|||||+..++...
T Consensus 57 ~LD~~lgGl~~G~---l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 57 ELDRMTYGYKRRN---FVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHHSSBCTTC---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCc---EEEEEeCCCCCHHHHHHHHHHHH
Confidence 4555555579999 99999999999999998887554
No 454
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.80 E-value=0.02 Score=50.91 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHh
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLN 88 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~g 88 (465)
+++-++|+|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 456899999999999999998854
No 455
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.79 E-value=0.028 Score=54.06 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|.+|||||||++.|.|.-
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999864
No 456
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.77 E-value=0.016 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=5.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+-++|+|++|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999988865
No 457
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.72 E-value=0.033 Score=53.19 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
-+||.|+.||||||+++.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 458
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=93.69 E-value=0.012 Score=48.75 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=33.8
Q ss_pred ceEEEEEeeecCCCCeEeeeeeeeeeeeeEeccccc
Q 012357 306 GKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMA 341 (465)
Q Consensus 306 ~~~~l~~~~~~~~~p~i~~~~~~f~v~~~il~gl~~ 341 (465)
.+++|.|.|..+++|+|++..++|+|++|||+|.+.
T Consensus 24 ~lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~ 59 (101)
T 2qrr_A 24 PLVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLD 59 (101)
T ss_dssp EEEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEE
T ss_pred EEEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeee
Confidence 589999999999999999999999999999999853
No 459
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.66 E-value=0.055 Score=53.57 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg 100 (465)
-+.|.||+|+|||||++.++........+.+++
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~ 79 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTSCEEEEEEC
T ss_pred eEEEECCCCccHHHHHHHHHHHcCCCcEEEEEh
Confidence 688999999999999999998773344555554
No 460
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.58 E-value=0.017 Score=52.68 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.7
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
..+-|+|+|++|+|||||++.+.+-
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567999999999999999988854
No 461
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.58 E-value=0.037 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.|.||+|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998765
No 462
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.55 E-value=0.041 Score=49.90 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-++|+|++|+|||||++.+.+-.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998653
No 463
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.53 E-value=0.011 Score=66.20 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=30.5
Q ss_pred eeEEecCccceEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 012357 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (465)
Q Consensus 57 sL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllP~sG~I~lDg 100 (465)
++.+.++. .+.+.||+|+|||||+++|++.+ ..+.+.+++
T Consensus 505 ~~~~~~~~---~vLL~GppGtGKT~Lakala~~~-~~~~i~v~~ 544 (806)
T 1ypw_A 505 KFGMTPSK---GVLFYGPPGCGKTLLAKAIANEC-QANFISIKG 544 (806)
T ss_dssp CCCCCCCC---CCCCBCCTTSSHHHHHHHHHHHH-TCCCCCCCC
T ss_pred hcCCCCCc---eeEEECCCCCCHHHHHHHHHHHh-CCCEEEEec
Confidence 44556777 89999999999999999999987 233444444
No 464
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.52 E-value=0.045 Score=50.44 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+-|+|+|++|+|||||++.+.+-.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998764
No 465
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.52 E-value=0.034 Score=58.53 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhcC
Q 012357 69 VGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 69 igIiGpSGSGKSTL~r~L~gll 90 (465)
+.|.||+|+|||||+++|++..
T Consensus 52 vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7799999999999999999976
No 466
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.48 E-value=0.04 Score=51.84 Aligned_cols=71 Identities=20% Similarity=0.168 Sum_probs=39.9
Q ss_pred hhhhhHhHHhhh-hccCcceeeeeeeecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEEecCCcceEEee
Q 012357 160 RIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (465)
Q Consensus 160 RVlIaegl~aL~-d~~~p~LdllDEpts~LD~~l~rrIlrdl~e~G~TI~~vi~~i~d~V~~m~~G~I~~~g~~aDIiI~ 238 (465)
.++++++-+++- ......+|....++++.+.+..|-..| .|.+..+....+..+. +. .+....||++|.
T Consensus 113 ~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~R----dg~s~eea~~ri~~Q~-~~-----eek~~~AD~VId 182 (210)
T 4i1u_A 113 PYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQR----NGFTREQVEAIIARQA-TR-----EARLAAADDVIV 182 (210)
T ss_dssp SSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHH----HCCCHHHHHHHHHHSC-CH-----HHHHHTCSEEEE
T ss_pred CEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhc----CCCCHHHHHHHHHHcC-Ch-----HHHHHhCCEEEE
Confidence 344555443332 223445677778887766554333223 3888877666665442 22 233467899887
Q ss_pred CC
Q 012357 239 NK 240 (465)
Q Consensus 239 ~~ 240 (465)
|+
T Consensus 183 N~ 184 (210)
T 4i1u_A 183 ND 184 (210)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 467
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.45 E-value=0.049 Score=51.30 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=24.7
Q ss_pred cCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.|.++.++.+.|..|+|||||+..|+..+
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45567799999999999999999998544
No 468
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.38 E-value=0.036 Score=57.47 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.|.||+|+|||||+++|++.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999876
No 469
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=93.34 E-value=0.0089 Score=49.46 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=34.6
Q ss_pred CCceEEEEEeeecCCCCeEeeeeeeeeeeeeEeccccc
Q 012357 304 RDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMA 341 (465)
Q Consensus 304 ~~~~~~l~~~~~~~~~p~i~~~~~~f~v~~~il~gl~~ 341 (465)
.+.+++|.|.|..+.+|+|++..++|+|.+|||+|.+.
T Consensus 19 ~~~lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~ 56 (98)
T 3ced_A 19 DAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIK 56 (98)
T ss_dssp TCEEEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEE
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeE
Confidence 35689999999999999999999999999999999743
No 470
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.29 E-value=0.021 Score=54.19 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhcC
Q 012357 69 VGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 69 igIiGpSGSGKSTL~r~L~gll 90 (465)
+.|.||+|+|||||+++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6789999999999999999865
No 471
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.27 E-value=0.051 Score=49.93 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+-|+|+|.+|+|||||++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999999875
No 472
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.24 E-value=0.042 Score=53.94 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=30.2
Q ss_pred CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 48 g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
|...+++.+...+..|..+ .+.|.||+|+||||+++.+++.+
T Consensus 41 g~~~~~~~l~~~l~~~~~~-~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 41 AQDHAVTVLKKTLKSANLP-HMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp SCCTTHHHHHHHTTCTTCC-CEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCC-EEEEECCCCCCHHHHHHHHHHHh
Confidence 3344445555555666322 38999999999999999999886
No 473
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.23 E-value=0.047 Score=52.79 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
-+.|.||+|+||||+++.++..+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999888776
No 474
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.22 E-value=0.026 Score=58.65 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+++|+|++|+||||++..|++.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999887
No 475
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.22 E-value=0.051 Score=51.90 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.-+.|.||+|+|||||++.++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3478899999999999999999875
No 476
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.03 E-value=0.068 Score=53.26 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=28.6
Q ss_pred CcEEEEeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHh
Q 012357 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (465)
Q Consensus 48 g~~~aL~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~g 88 (465)
.....+++.-+.+. |. -+.|.|+||+||||++-.+..
T Consensus 133 a~~~~~H~~~v~~~-g~---gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 133 ATVAQIHGVLLEVF-GV---GVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp CCCEEEEEEEEEET-TE---EEEEEESSSSSHHHHHHHHHT
T ss_pred hhcceeEEEEEEEC-CE---EEEEEcCCCCCHHHHHHHHHH
Confidence 34567888666664 55 699999999999999987654
No 477
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.02 E-value=0.056 Score=50.23 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+-++|+|.+|+|||||++.+.+.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999863
No 478
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.99 E-value=0.052 Score=57.71 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC--C--CeeEEEECC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM--P--SIAVITMDN 100 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll--P--~sG~I~lDg 100 (465)
+.+|.++|.+||||||+++.|+..+ + +.-.++.|.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 4589999999999999999998765 2 233455554
No 479
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.95 E-value=0.055 Score=56.46 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+|.++|.+||||||+++.|+..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998765
No 480
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.95 E-value=0.049 Score=54.51 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
-+.|.||+|+||||+++.|+..+
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999987
No 481
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.92 E-value=0.039 Score=57.36 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gl 89 (465)
.|+|+|.+|+|||||++.|.|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999875
No 482
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.89 E-value=0.051 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.++++|.+|+|||||++.|.+..
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTC
T ss_pred heEEeCCCCCCHHHHHHHHhccc
Confidence 79999999999999999999876
No 483
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.78 E-value=0.059 Score=52.60 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
++.++++|.+|+|||||++.|.|.-
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 5689999999999999999999864
No 484
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.77 E-value=0.048 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.|.||+|+|||||++.++..+
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999876
No 485
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.74 E-value=0.046 Score=50.11 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHH-HHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEK-VLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~-L~gl 89 (465)
.+-++|+|.+|+|||||++. +.+.
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 56799999999999999998 5554
No 486
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.66 E-value=0.067 Score=50.53 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+|+|.|+.||||||+++.|+..+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHc
Confidence 499999999999999999999876
No 487
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.66 E-value=0.053 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
+|.|-|+-||||||+++.|...+
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 78999999999999999999877
No 488
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.52 E-value=0.074 Score=48.43 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHH-HHHHhc
Q 012357 68 LVGVAGPSGAGKTVFT-EKVLNF 89 (465)
Q Consensus 68 IigIiGpSGSGKSTL~-r~L~gl 89 (465)
++.|.|+.||||||++ +.+...
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999998 444443
No 489
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.52 E-value=0.063 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
-+.|.||+|+||||+++.++..+
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999887
No 490
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.49 E-value=0.046 Score=58.06 Aligned_cols=25 Identities=4% Similarity=0.061 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcCC
Q 012357 67 ILVGVAGPSGAGKTVFTEKVLNFMP 91 (465)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gllP 91 (465)
.+|.++|.+||||||+++.|+..+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHH
Confidence 4999999999999999999999883
No 491
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.68 E-value=0.023 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
.+-++|+|++|+|||||++.+.+-
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 457999999999999999888754
No 492
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.48 E-value=0.066 Score=56.79 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.2
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
.++.+|+|+|++||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346699999999999999999999554
No 493
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.40 E-value=0.073 Score=53.58 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=27.9
Q ss_pred eeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 54 ~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.+.--+.+|+ ++.|+|++|+|||||+..++...
T Consensus 37 D~~~gGl~~G~---LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 37 DNYTSGFNKGS---LVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HHHHCSBCTTC---EEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHhcCCCCCc---EEEEEeCCCCCHHHHHHHHHHHH
Confidence 33333468999 99999999999999999888765
No 494
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.39 E-value=0.068 Score=57.20 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+.++.+.|++||||||+++.|...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999998866
No 495
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.35 E-value=0.073 Score=52.80 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
+..+.|.||+|+|||||++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3389999999999999999998865
No 496
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.30 E-value=0.071 Score=55.19 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=28.7
Q ss_pred EeeeeeEEecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 53 L~~VsL~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
|+.+.--+++|+ ++.|+|++|+|||||+..++...
T Consensus 190 LD~~lgGl~~G~---l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 190 LDQLIGTLGPGS---LNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHCCCCTTC---EEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCc---EEEEEeCCCCCHHHHHHHHHHHH
Confidence 344443478999 99999999999999999888765
No 497
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.23 E-value=0.081 Score=52.42 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEEC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD 99 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-P~sG~I~lD 99 (465)
.+.|.||+|+|||||++.++..+ .....+.+.
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 78999999999999999999887 323344443
No 498
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.22 E-value=0.079 Score=53.19 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=24.5
Q ss_pred eEEecCccceEEEEEcCCCCcHHHHHHHHHhc
Q 012357 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (465)
Q Consensus 58 L~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (465)
--+++|. ++.|.||+|+|||||+..++..
T Consensus 118 GGi~~gs---viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASG---MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESE---EEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCc---EEEEEcCCCCCHHHHHHHHHHh
Confidence 3466777 8899999999999999998754
No 499
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.21 E-value=0.066 Score=50.44 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 012357 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (465)
.+.|.||.|+||||++.+|+..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999876
No 500
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.17 E-value=0.083 Score=55.55 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=25.9
Q ss_pred eEEecCccceEEEEEcCCCCcHHHHHHHHHhcC
Q 012357 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (465)
Q Consensus 58 L~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (465)
..+-+|+ .++|.|++|+|||||++.|....
T Consensus 146 ~pi~kGq---~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 146 APYIKGG---KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp SCEETTC---EEEEECCSSSCHHHHHHHHHHHH
T ss_pred hhhccCC---EEEEECCCCCCccHHHHHHHhhh
Confidence 4456788 89999999999999999988765
Done!