BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012358
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DA1|A Chain A, X-Ray Structure Of The Glycerol-3-Phosphate Dehydrogenase
From Bacillus Halodurans Complexed With Fad. Northeast
Structural Genomics Consortium Target Bhr167
Length = 561
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 118/434 (27%), Positives = 189/434 (43%), Gaps = 23/434 (5%)
Query: 15 VGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRXXX 74
+GLK+YD +A + +++ E P L + +LKG +Y + + +D+R
Sbjct: 119 LGLKVYDYLADVRKDERRYXLNEKQTLEKEPLL----RKENLKGGGIYVEYRTDDARLTL 174
Query: 75 XXXXXXXXXXXXXXXXXEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134
+V S I D+ +++G ++ L+ YAK VVNAAGP+
Sbjct: 175 EIXKEAVARGAVALNYXKVESFIYDQG--KVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232
Query: 135 DSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGT 194
D++R+ + S GVH+V+ P + DGR +F +P G+T GT
Sbjct: 233 DTLREKDRSKHGKYLKLSKGVHLVVDQSRFPLRQAVYFDTESDGRXIFAIPREGKTYIGT 292
Query: 195 TDS--DTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTE 252
TD+ D I ED + A + ++++ DV S+W+G+RPL + K +E
Sbjct: 293 TDTFYDKDIASPRXTVEDRDYILAAANYXFPSLRLTADDVESSWAGLRPLIHEEGKKASE 352
Query: 253 SISRDHVVCEDFPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLTQNLRLVGGD 312
+D + D GL++I GGK T YR AE V+A + LN + C T +RL GG
Sbjct: 353 ISRKDEIFFSD-SGLISIAGGKLTGYRKXAERTVDAVAQG--LNVNEPCTTAAIRLSGGL 409
Query: 313 GWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGK 372
F + R G D + L+ YG + V A EG +
Sbjct: 410 AEGAQGFPRFLDEASRKGAKLG-------FDADEVRRLAKLYGSNVDHVLNYAY-EGKEE 461
Query: 373 RLAHGYP-FLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHK 431
+G P L ++ Y E + +DF RR F + + ++ A E
Sbjct: 462 AEHYGLPALLLGQLQYGVEQEXVATPLDFFVRRTGALFFNISLVHQWKEAVLRWXAEEFS 521
Query: 432 W---DKSRRKQELQ 442
W +K+R + EL+
Sbjct: 522 WTEEEKTRFQNELE 535
>pdb|2RGH|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 571
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 112/464 (24%), Positives = 202/464 (43%), Gaps = 51/464 (10%)
Query: 4 CFDWFEVVYYWVGLKMYDLVAGRHLLHLSRY-YSAQESAELFPTLAMKAKDRSLKGAVVY 62
F+ F V V +YD +A Y + +E E P L K LKGA VY
Sbjct: 128 TFNXFSV---KVAXDLYDKLANVTGTKYENYTLTPEEVLEREPFL----KKEGLKGAGVY 180
Query: 63 YDGQMNDSRXXXXXXXXXXXXXXXXXXXXEVISLIKDEASNRIIGARIRNNLSGKEFDTY 122
D + ND+R + + + + ++I+G + R+ L+ + +
Sbjct: 181 LDFRNNDARLVIDNIKKAAEDGAYLVSKXKAVGFLYE--GDQIVGVKARDLLTDEVIEIK 238
Query: 123 AKVVVNAAGPFCDSVRKLA-DQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPK------- 174
AK+V+N +GP+ D VR L + V P P+ G+H+V+ + L VP+
Sbjct: 239 AKLVINTSGPWVDKVRNLNFTRPVSPKXRPTKGIHLVV------DAKKLPVPQPTYFDTG 292
Query: 175 TKDGRVVFMLPWLGRTVAGTTDSDTVITLL-PEPHEDEIQFILDAISD-YLNVKVRRTDV 232
+DGR VF +P +T GTTD+D P+ ++++ ++LD I+ Y + D+
Sbjct: 293 KQDGRXVFAIPRENKTYFGTTDTDYQGDFTDPKVTQEDVDYLLDVINHRYPEANITLADI 352
Query: 233 LSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRSMAEDAVNAAIKS 292
++W+G+RPL + S + +ISR + + GL+T++GGK T YR AE A+ +
Sbjct: 353 EASWAGLRPLLIGNSGSPS-TISRGSSLEREPDGLLTLSGGKITDYRKXAEGALR--LIR 409
Query: 293 GKLNPSNGCLTQNLR----LVGGDGWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAK 348
L G T+ + + G +DP+ + + + V ++ A
Sbjct: 410 QLLKEEYGIETKEIDSKKYQISGGNFDPTKLEETVTELAK-------EGVAAGLEEEDAT 462
Query: 349 HLSHAYGIMAEQVAIIAQNEGLGKRLAHGYPFL----EAEVAYCARNEYCESAVDFVARR 404
+++ YG A ++ +A+ YP L A + Y E + D++ RR
Sbjct: 463 YIADFYGTNARRIFELAKEXA-------PYPGLSLAESARLRYGLEEEXVLAPGDYLIRR 515
Query: 405 CRLAFLDTDAAGRALPRIIEIMATEHKWDKSRRKQELQKAKEFL 448
+ D +I+ +A W + + Q+ ++ + +
Sbjct: 516 TNHLLFERDQLDEIKQPVIDAIAEYFGWTEEEKAQQTKRLEALI 559
>pdb|2RGO|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
pdb|2RGO|B Chain B, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 607
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/513 (22%), Positives = 207/513 (40%), Gaps = 99/513 (19%)
Query: 4 CFDWFEVVYYWVGLKMYDLVAGRHLLHLSRY-YSAQESAELFPTLAMKAKDRSLKGAVVY 62
F+ F V V + +YD +A Y + +E E P L K LKGA VY
Sbjct: 114 TFNMFSV---KVAMDLYDKLANVTGTKYENYTLTPEEVLEREPFL----KKEGLKGAGVY 166
Query: 63 YDGQMNDSRXXXXXXXXXXXXXXXXXXXXEVISLIKDEASNRIIGARIRNNLSGKEFDTY 122
D + ND+R + + + + ++I+G + R+ L+ + +
Sbjct: 167 LDFRNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYE--GDQIVGVKARDLLTDEVIEIK 224
Query: 123 AKVVVNAAGPFCDSVRKLA-DQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPK------- 174
AK+V+N +GP+ D VR L + V P + P+ G+H+V+ + L VP+
Sbjct: 225 AKLVINTSGPWVDKVRNLNFTRPVSPKMRPTKGIHLVV------DAKKLPVPQPTYFDTG 278
Query: 175 TKDGRVVFMLPWLGRTVAGTTDSDTVITLL-PEPHEDEIQFILDAISD-YLNVKVRRTDV 232
+DGR+VF +P +T GTTD+D P+ ++++ ++LD I+ Y + D+
Sbjct: 279 KQDGRMVFAIPRENKTYFGTTDTDYQGDFTDPKVTQEDVDYLLDVINHRYPEANITLADI 338
Query: 233 LSAWSGIRPLAMDPSA-------------------------------------------- 248
++W+G+RPL + S
Sbjct: 339 EASWAGLRPLLIGNSGSDYNGGDNGSISDKSFNKVVDTVSEYKENKVSRAEVEDVLNHLE 398
Query: 249 -----KNTESISRDHVVCEDFPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLT 303
K +ISR + + GL+T++GGK T YR MAE A+ + L G T
Sbjct: 399 NSRDEKAPSTISRGSSLEREPDGLLTLSGGKITDYRKMAEGALR--LIRQLLKEEYGIET 456
Query: 304 QNLR----LVGGDGWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAE 359
+ + + G +DP+ + + + V ++ A +++ YG A
Sbjct: 457 KEIDSKKYQISGGNFDPTKLEETVTELAK-------EGVAAGLEEEDATYIADFYGTNAR 509
Query: 360 QVAIIAQNEGLGKRLAHGYPFL----EAEVAYCARNEYCESAVDFVARRCRLAFLDTDAA 415
++ +A K +A YP L A + Y E + D++ RR + D
Sbjct: 510 RIFELA------KEMAP-YPGLSLAESARLRYGLEEEMVLAPGDYLIRRTNHLLFERDQL 562
Query: 416 GRALPRIIEIMATEHKWDKSRRKQELQKAKEFL 448
+I+ +A W + + Q+ ++ + +
Sbjct: 563 DEIKQPVIDAIAEYFGWTEEEKAQQTKRLEALI 595
>pdb|2QCU|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
From Escherichia Coli
pdb|2QCU|B Chain B, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
From Escherichia Coli
pdb|2R45|A Chain A, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With 2-Phospho-D-Glyceric Acid
pdb|2R45|B Chain B, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With 2-Phospho-D-Glyceric Acid
pdb|2R46|A Chain A, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With 2-Phosphopyruvic Acid.
pdb|2R46|B Chain B, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With 2-Phosphopyruvic Acid.
pdb|2R4E|A Chain A, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With Dhap
pdb|2R4E|B Chain B, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With Dhap
Length = 501
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 162/336 (48%), Gaps = 61/336 (18%)
Query: 115 SGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPS-------SGVHIVLPDYYSPEG 167
+GK++ A+ +VNA GP+ V++ D M PS G HIV+P ++ +
Sbjct: 191 TGKKYSWQARGLVNATGPW---VKQFFDDG---MHLPSPYGIRLIKGSHIVVPRVHTQKQ 244
Query: 168 MGLIVPKTKDGRVVFMLPWLGR-TVAGTTDSDTVITLLPEP-----HEDEIQFILDAISD 221
++ + +D R+VF++PW+ ++ GTTD + +P E EI ++L+ +
Sbjct: 245 AYIL--QNEDKRIVFVIPWMDEFSIIGTTD----VEYKGDPKAVKIEESEINYLLNVYNT 298
Query: 222 YLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVV-CEDFPG---LVTITGGKWTT 277
+ ++ R D++ +SG+RPL D S + ++I+RD+ + D G L+++ GGK TT
Sbjct: 299 HFKKQLSRDDIVWTYSGVRPLCDDES-DSPQAITRDYTLDIHDENGKAPLLSVFGGKLTT 357
Query: 278 YRSMAEDAVNAAIKSGKLNPS----NGCLTQNLRLVGG--DGWDPSSFTVLAQQYVRMKR 331
YR +AE A+ KL P T+ L GG +G D + R++R
Sbjct: 358 YRKLAEHALE------KLTPYYQGIGPAWTKESVLPGGAIEG-DRDDYA------ARLRR 404
Query: 332 TYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAH--GYPFLEAEVAYCA 389
Y + ++A+H + YG +E ++ N G L G+ F EAE+ Y
Sbjct: 405 RY------PFLTESLARHYARTYGSNSE---LLLGNAGTVSDLGEDFGHEFYEAELKYLV 455
Query: 390 RNEYCESAVDFVARRCRLA-FLDTDAAGRALPRIIE 424
+E+ A D + RR + +L+ D R ++E
Sbjct: 456 DHEWVRRADDALWRRTKQGMWLNADQQSRVSQWLVE 491
>pdb|2R4J|A Chain A, Crystal Structure Of Escherichia Coli Semet Substituted
Glycerol-3-Phosphate Dehydrogenase In Complex With Dhap
pdb|2R4J|B Chain B, Crystal Structure Of Escherichia Coli Semet Substituted
Glycerol-3-Phosphate Dehydrogenase In Complex With Dhap
Length = 501
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 161/351 (45%), Gaps = 58/351 (16%)
Query: 103 NRIIGARIRNNL---------SGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPM-ICPS 152
R AR N L +GK++ A+ +VNA GP+ P I
Sbjct: 170 TRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGXHLPSPYGIRLI 229
Query: 153 SGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGR-TVAGTTDSDTVITLLPEP---- 207
G HIV+P ++ + ++ + +D R+VF++PW ++ GTTD + +P
Sbjct: 230 KGSHIVVPRVHTQKQAYIL--QNEDKRIVFVIPWXDEFSIIGTTD----VEYKGDPKAVK 283
Query: 208 -HEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVV-CEDFP 265
E EI ++L+ + + ++ R D++ +SG+RPL D S + ++I+RD+ + D
Sbjct: 284 IEESEINYLLNVYNTHFKKQLSRDDIVWTYSGVRPLCDDES-DSPQAITRDYTLDIHDEN 342
Query: 266 G---LVTITGGKWTTYRSMAEDAVNAAIKSGKLNPS----NGCLTQNLRLVGG--DGWDP 316
G L+++ GGK TTYR +AE A+ KL P T+ L GG +G D
Sbjct: 343 GKAPLLSVFGGKLTTYRKLAEHALE------KLTPYYQGIGPAWTKESVLPGGAIEG-DR 395
Query: 317 SSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAH 376
+ R++R Y + ++A+H + YG +E ++ N G L
Sbjct: 396 DDYA------ARLRRRY------PFLTESLARHYARTYGSNSE---LLLGNAGTVSDLGE 440
Query: 377 --GYPFLEAEVAYCARNEYCESAVDFVARRCRLA-FLDTDAAGRALPRIIE 424
G+ F EAE+ Y +E+ A D + RR + +L+ D R ++E
Sbjct: 441 DFGHEFYEAELKYLVDHEWVRRADDALWRRTKQGXWLNADQQSRVSQWLVE 491
>pdb|3VPJ|E Chain E, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
pdb|3VPJ|F Chain F, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
pdb|3VPJ|G Chain G, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
pdb|3VPJ|H Chain H, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
Length = 192
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 107 GARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK 139
G R+ SG+ D+ AK+V + PFC + +K
Sbjct: 160 GLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK 192
>pdb|4FGI|B Chain B, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
pdb|4FGI|D Chain D, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
pdb|4FGI|F Chain F, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
pdb|4FGI|H Chain H, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
Length = 151
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 107 GARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK 139
G R+ SG+ D+ AK+V + PFC + +K
Sbjct: 119 GLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK 151
>pdb|4EQA|C Chain C, Crystal Structure Of Pa1844 In Complex With Pa1845 From
Pseudomonas Aeruginosa Pao1
pdb|4EQA|D Chain D, Crystal Structure Of Pa1844 In Complex With Pa1845 From
Pseudomonas Aeruginosa Pao1
Length = 153
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 107 GARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK 139
G R+ SG+ D+ AK+V + PFC + +K
Sbjct: 121 GLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK 153
>pdb|3FKD|A Chain A, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
pdb|3FKD|B Chain B, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
pdb|3FKD|C Chain C, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
pdb|3FKD|D Chain D, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
Length = 350
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 296 NPSN--GCLTQNLRLVGGDGWDPSSFTVLAQQYVRM--KRTYGGKFVPGVMDTAVAKHLS 351
NP+N G L Q ++ P + VL Q YV + + G + S
Sbjct: 137 NPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVXVYSFS 196
Query: 352 HAYGIMAEQVAIIAQNEGLGKRLA 375
HAYGI ++ I N+ KR+A
Sbjct: 197 HAYGIPGLRIGYIVANKDFXKRVA 220
>pdb|3NYE|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Arginine
pdb|3NYF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Histidine
pdb|3NYC|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase
pdb|3SM8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With An (N5) Flavin Adduct
Length = 381
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 123 AKVVVNAAGPFCDSVRKLADQNVQPM-ICPSSGVHIVLPDYYSPEGMG-----LIVPKTK 176
A V+VNAAG +CD++ LA V+P+ + P + + P G+ ++V +
Sbjct: 198 AAVLVNAAGAWCDAIAGLA--GVRPLGLQPKRRSAFI---FAPPPGIDCHDWPMLVSLDE 252
Query: 177 DGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAW 236
++ P G + ++D V +P + +I + I + + +RR + W
Sbjct: 253 S---FYLKPDAGMLLGSPANADPVEAHDVQPEQLDIATGMYLIEEATTLTIRRPE--HTW 307
Query: 237 SGIRPLAMD 245
+G+R D
Sbjct: 308 AGLRSFVAD 316
>pdb|1O5I|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Reductase (Tm1169) From Thermotoga Maritima At 2.50 A
Resolution
pdb|1O5I|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Reductase (Tm1169) From Thermotoga Maritima At 2.50 A
Resolution
pdb|1O5I|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Reductase (Tm1169) From Thermotoga Maritima At 2.50 A
Resolution
pdb|1O5I|D Chain D, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Reductase (Tm1169) From Thermotoga Maritima At 2.50 A
Resolution
Length = 249
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 355 GIMAEQVAIIAQNEGLGKRLAHGYPFLEAEVAYCARNE 392
GI + V ++A + G+G+ +A AEV CARNE
Sbjct: 16 GIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE 53
>pdb|2R8J|A Chain A, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
pdb|2R8J|B Chain B, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
pdb|2R8K|A Chain A, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
pdb|2R8K|B Chain B, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
Length = 554
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 200 VITLLPEPHEDEIQFILDA-------ISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTE 252
+I +L PHE+ I+ I + + ++L+ KV+++D + S I PL A+
Sbjct: 339 LIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLF 398
Query: 253 SISR 256
+SR
Sbjct: 399 KLSR 402
>pdb|2WTF|A Chain A, Dna Polymerase Eta In Complex With The
Cis-Diammineplatinum (Ii) 1,3-Gtg Intrastrand Cross-Link
pdb|2WTF|B Chain B, Dna Polymerase Eta In Complex With The
Cis-Diammineplatinum (Ii) 1,3-Gtg Intrastrand Cross-Link
pdb|2XGP|A Chain A, Yeast Dna Polymerase Eta In Complex With C8-2-
Acetylaminofluorene Containing Dna
pdb|2XGP|B Chain B, Yeast Dna Polymerase Eta In Complex With C8-2-
Acetylaminofluorene Containing Dna
pdb|2XGQ|A Chain A, Structure Of Yeast Dna Polymerase Eta In Complex With
C8-N- Acetyl-2-Aminoanthracene Containing Dna
pdb|2XGQ|B Chain B, Structure Of Yeast Dna Polymerase Eta In Complex With
C8-N- Acetyl-2-Aminoanthracene Containing Dna
Length = 536
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 200 VITLLPEPHEDEIQFILDA-------ISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTE 252
+I +L PHE+ I+ I + + ++L+ KV+++D + S I PL A+
Sbjct: 339 LIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLF 398
Query: 253 SISR 256
+SR
Sbjct: 399 KLSR 402
>pdb|3MFH|A Chain A, Dna Polymerase Eta In Complex With Undamaged Dna
pdb|3MFI|A Chain A, Dna Polymerase Eta In Complex With A Cis-Syn Thymidine
Dimer
pdb|3OHA|A Chain A, Yeast Dna Polymerase Eta Inserting Dctp Opposite An 8oxog
Lesion
pdb|3OHB|A Chain A, Yeast Dna Polymerase Eta Extending From An 8-Oxog Lesion
Length = 520
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 200 VITLLPEPHEDEIQFILDA-------ISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTE 252
+I +L PHE+ I+ I + + ++L+ KV+++D + S I PL A+
Sbjct: 323 LIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLF 382
Query: 253 SISR 256
+SR
Sbjct: 383 KLSR 386
>pdb|1JIH|A Chain A, Yeast Dna Polymerase Eta
pdb|1JIH|B Chain B, Yeast Dna Polymerase Eta
Length = 513
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 200 VITLLPEPHEDEIQFILDA-------ISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTE 252
+I +L PHE+ I+ I + + ++L+ KV+++D + S I PL A+
Sbjct: 316 LIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLF 375
Query: 253 SISR 256
+SR
Sbjct: 376 KLSR 379
>pdb|2E7Z|A Chain A, Acetylene Hydratase From Pelobacter Acetylenicus
Length = 727
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 159 LPDYYSPEGMGLIVPKTK 176
LPDY+ PEG+G+ P K
Sbjct: 541 LPDYFGPEGVGVATPSGK 558
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,476,601
Number of Sequences: 62578
Number of extensions: 541806
Number of successful extensions: 1327
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 24
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)