Query 012358
Match_columns 465
No_of_seqs 261 out of 2524
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 01:48:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02464 glycerol-3-phosphate 100.0 4.9E-78 1.1E-82 647.1 52.1 462 2-465 164-627 (627)
2 KOG0042 Glycerol-3-phosphate d 100.0 2.2E-80 4.8E-85 615.4 28.5 435 1-454 159-648 (680)
3 COG0578 GlpA Glycerol-3-phosph 100.0 6.3E-73 1.4E-77 580.0 43.8 426 1-451 97-530 (532)
4 TIGR03377 glycerol3P_GlpA glyc 100.0 4.7E-62 1E-66 516.4 44.0 380 31-445 94-478 (516)
5 PRK11101 glpA sn-glycerol-3-ph 100.0 1.3E-59 2.8E-64 499.3 45.1 377 31-445 115-500 (546)
6 PRK12266 glpD glycerol-3-phosp 100.0 1.1E-58 2.3E-63 488.6 43.4 398 9-435 100-505 (508)
7 PRK13369 glycerol-3-phosphate 100.0 1.8E-57 4E-62 479.3 43.7 380 8-415 99-487 (502)
8 PRK11728 hydroxyglutarate oxid 99.9 6.6E-23 1.4E-27 210.4 24.4 235 31-289 116-393 (393)
9 COG0579 Predicted dehydrogenas 99.9 3.1E-21 6.8E-26 195.4 23.3 256 18-291 106-374 (429)
10 TIGR02352 thiamin_ThiO glycine 99.9 2.1E-21 4.5E-26 194.6 21.4 226 30-290 101-334 (337)
11 PF01266 DAO: FAD dependent ox 99.9 1.4E-20 3.1E-25 189.2 20.8 231 31-288 112-358 (358)
12 PRK12409 D-amino acid dehydrog 99.8 2.1E-19 4.6E-24 185.5 24.0 237 31-291 162-405 (410)
13 TIGR01373 soxB sarcosine oxida 99.8 1.3E-18 2.8E-23 179.4 26.8 236 31-291 142-384 (407)
14 TIGR01320 mal_quin_oxido malat 99.8 1.2E-18 2.6E-23 182.5 26.9 256 31-291 137-444 (483)
15 PRK00711 D-amino acid dehydrog 99.8 7E-19 1.5E-23 181.8 23.9 235 31-291 163-401 (416)
16 PRK11259 solA N-methyltryptoph 99.8 3.3E-18 7.1E-23 174.3 25.6 231 31-291 113-359 (376)
17 TIGR03197 MnmC_Cterm tRNA U-34 99.8 3.1E-19 6.7E-24 182.5 17.3 231 32-291 103-361 (381)
18 KOG2844 Dimethylglycine dehydr 99.8 1.1E-18 2.3E-23 179.1 20.8 252 15-288 133-401 (856)
19 PRK05257 malate:quinone oxidor 99.8 8.4E-18 1.8E-22 176.4 25.4 258 31-291 142-449 (494)
20 PRK13339 malate:quinone oxidor 99.8 4.9E-17 1.1E-21 169.7 25.6 267 18-291 130-451 (497)
21 TIGR03364 HpnW_proposed FAD de 99.8 4E-17 8.6E-22 165.9 21.0 221 31-283 109-364 (365)
22 TIGR01377 soxA_mon sarcosine o 99.8 2.5E-16 5.5E-21 160.7 26.1 233 31-291 109-359 (380)
23 PTZ00383 malate:quinone oxidor 99.8 8.5E-17 1.8E-21 168.4 23.0 257 19-294 157-476 (497)
24 KOG2853 Possible oxidoreductas 99.7 2.5E-16 5.5E-21 150.5 20.1 242 30-290 205-484 (509)
25 TIGR03329 Phn_aa_oxid putative 99.7 2.3E-15 5.1E-20 157.6 24.8 228 29-291 148-393 (460)
26 COG0665 DadA Glycine/D-amino a 99.7 1.7E-15 3.7E-20 154.9 22.6 234 33-291 122-366 (387)
27 PRK01747 mnmC bifunctional tRN 99.7 1.5E-15 3.2E-20 166.0 20.9 230 32-291 376-632 (662)
28 KOG2665 Predicted FAD-dependen 99.6 1.5E-14 3.3E-19 137.3 13.7 251 25-290 157-452 (453)
29 KOG3923 D-aspartate oxidase [A 99.3 4.5E-11 9.7E-16 113.2 13.0 215 30-293 120-337 (342)
30 PF06039 Mqo: Malate:quinone o 99.1 7.2E-09 1.6E-13 104.9 21.5 268 18-289 127-445 (488)
31 KOG2852 Possible oxidoreductas 99.0 6.5E-09 1.4E-13 98.2 15.1 216 64-292 141-367 (380)
32 KOG2820 FAD-dependent oxidored 99.0 6.6E-08 1.4E-12 93.5 19.9 239 29-292 114-378 (399)
33 PLN02697 lycopene epsilon cycl 98.2 0.00018 4E-09 76.4 21.4 205 66-292 188-409 (529)
34 PRK06185 hypothetical protein; 98.0 0.00048 1E-08 71.0 19.7 147 67-226 105-254 (407)
35 TIGR02032 GG-red-SF geranylger 98.0 0.00097 2.1E-08 65.0 20.0 186 67-274 88-279 (295)
36 TIGR01790 carotene-cycl lycope 97.9 0.0023 5E-08 65.5 22.5 203 65-291 80-298 (388)
37 PRK04176 ribulose-1,5-biphosph 97.8 0.00012 2.6E-09 70.8 9.3 73 67-140 101-179 (257)
38 TIGR03378 glycerol3P_GlpB glyc 97.7 0.00015 3.3E-09 74.3 9.0 71 67-142 260-331 (419)
39 PF05834 Lycopene_cycl: Lycope 97.6 0.009 2E-07 61.0 20.9 197 66-290 83-289 (374)
40 COG0644 FixC Dehydrogenases (f 97.6 0.031 6.7E-07 57.6 24.6 239 33-289 46-307 (396)
41 PRK06134 putative FAD-binding 97.6 0.00031 6.7E-09 76.0 10.0 72 65-140 212-284 (581)
42 TIGR02023 BchP-ChlP geranylger 97.6 0.012 2.6E-07 60.4 21.3 73 67-144 89-164 (388)
43 PLN02463 lycopene beta cyclase 97.4 0.019 4.2E-07 60.0 19.8 62 65-135 109-170 (447)
44 TIGR01372 soxA sarcosine oxida 97.3 0.00022 4.9E-09 81.6 5.1 64 371-437 504-567 (985)
45 PRK14989 nitrite reductase sub 97.3 0.058 1.2E-06 60.9 23.7 56 370-431 420-475 (847)
46 TIGR02730 carot_isom carotene 97.3 0.00067 1.4E-08 72.0 7.9 70 57-135 218-287 (493)
47 PRK08773 2-octaprenyl-3-methyl 97.2 0.0056 1.2E-07 62.8 14.1 70 67-145 110-179 (392)
48 PF04324 Fer2_BFD: BFD-like [2 97.2 0.00022 4.7E-09 51.6 2.6 52 373-429 2-54 (55)
49 TIGR02028 ChlP geranylgeranyl 97.1 0.094 2E-06 54.1 21.6 75 67-144 90-169 (398)
50 PRK07608 ubiquinone biosynthes 97.1 0.0081 1.8E-07 61.4 13.5 70 66-145 107-177 (388)
51 TIGR01813 flavo_cyto_c flavocy 97.0 0.0027 5.8E-08 66.3 9.3 70 64-135 124-193 (439)
52 PRK12839 hypothetical protein; 97.0 0.0032 6.9E-08 68.0 10.0 68 67-137 211-279 (572)
53 PRK07333 2-octaprenyl-6-methox 97.0 0.012 2.6E-07 60.5 13.8 70 66-144 107-176 (403)
54 PRK07121 hypothetical protein; 96.9 0.0039 8.4E-08 66.1 9.8 65 68-135 175-240 (492)
55 PF00890 FAD_binding_2: FAD bi 96.9 0.0052 1.1E-07 63.6 9.8 66 68-135 139-204 (417)
56 PRK08244 hypothetical protein; 96.7 0.1 2.2E-06 55.4 18.3 71 68-144 98-168 (493)
57 TIGR01984 UbiH 2-polyprenyl-6- 96.7 0.022 4.7E-07 58.1 12.7 69 67-144 102-171 (382)
58 PLN00093 geranylgeranyl diphos 96.7 0.25 5.4E-06 51.8 20.4 76 67-144 129-208 (450)
59 PRK05675 sdhA succinate dehydr 96.6 0.0089 1.9E-07 64.5 9.8 67 69-136 125-191 (570)
60 PF01494 FAD_binding_3: FAD bi 96.6 0.078 1.7E-06 52.8 15.6 74 67-144 108-181 (356)
61 PRK08626 fumarate reductase fl 96.6 0.0098 2.1E-07 65.3 9.5 64 71-136 159-222 (657)
62 PRK08274 tricarballylate dehyd 96.5 0.011 2.5E-07 62.1 9.6 64 69-135 130-193 (466)
63 PRK06854 adenylylsulfate reduc 96.5 0.011 2.5E-07 64.2 9.6 68 68-137 130-198 (608)
64 PRK06481 fumarate reductase fl 96.5 0.014 3E-07 62.2 9.8 70 64-136 184-253 (506)
65 TIGR02734 crtI_fam phytoene de 96.5 0.0083 1.8E-07 63.8 8.1 68 58-134 209-276 (502)
66 PRK12843 putative FAD-binding 96.4 0.013 2.7E-07 63.6 9.5 66 67-136 218-284 (578)
67 TIGR01988 Ubi-OHases Ubiquinon 96.4 0.056 1.2E-06 54.9 13.7 69 67-144 103-172 (385)
68 PRK08958 sdhA succinate dehydr 96.4 0.015 3.2E-07 63.1 9.8 66 70-136 143-208 (588)
69 PTZ00139 Succinate dehydrogena 96.4 0.015 3.3E-07 63.3 9.9 66 69-135 165-230 (617)
70 PRK09078 sdhA succinate dehydr 96.4 0.015 3.2E-07 63.2 9.8 66 70-136 149-214 (598)
71 PRK05714 2-octaprenyl-3-methyl 96.4 0.05 1.1E-06 56.0 13.1 70 67-145 109-178 (405)
72 PRK06847 hypothetical protein; 96.4 0.15 3.2E-06 51.8 16.3 70 66-143 103-172 (375)
73 TIGR01816 sdhA_forward succina 96.3 0.019 4.1E-07 62.0 9.9 66 69-136 118-183 (565)
74 PLN02612 phytoene desaturase 96.3 0.18 4E-06 54.4 17.0 59 69-133 307-365 (567)
75 PRK06126 hypothetical protein; 96.2 0.2 4.3E-06 53.9 17.2 71 70-144 126-197 (545)
76 PLN00128 Succinate dehydrogena 96.2 0.022 4.8E-07 62.2 10.0 66 70-136 187-252 (635)
77 TIGR02061 aprA adenosine phosp 96.2 0.023 5E-07 61.8 9.8 66 71-137 127-194 (614)
78 TIGR01812 sdhA_frdA_Gneg succi 96.2 0.024 5.1E-07 61.3 9.9 65 69-135 128-192 (566)
79 PRK06184 hypothetical protein; 96.2 0.095 2.1E-06 55.7 14.4 69 70-144 109-177 (502)
80 PRK12835 3-ketosteroid-delta-1 96.2 0.02 4.3E-07 62.1 9.3 68 71-141 214-284 (584)
81 PF00732 GMC_oxred_N: GMC oxid 96.2 0.014 3.1E-07 57.2 7.6 71 73-143 195-268 (296)
82 PRK08020 ubiF 2-octaprenyl-3-m 96.2 0.067 1.5E-06 54.7 12.8 69 67-144 109-178 (391)
83 PRK06452 sdhA succinate dehydr 96.2 0.025 5.4E-07 61.1 9.9 63 70-134 136-198 (566)
84 PRK08275 putative oxidoreducta 96.2 0.027 5.9E-07 60.7 10.2 64 71-135 138-201 (554)
85 PRK08205 sdhA succinate dehydr 96.1 0.026 5.6E-07 61.2 9.8 67 69-136 139-208 (583)
86 TIGR00136 gidA glucose-inhibit 96.1 0.013 2.9E-07 62.8 7.3 69 59-134 85-154 (617)
87 PRK05945 sdhA succinate dehydr 96.1 0.027 5.9E-07 60.9 9.8 65 70-136 135-199 (575)
88 PRK07057 sdhA succinate dehydr 96.1 0.027 5.8E-07 61.2 9.7 66 70-136 148-213 (591)
89 PRK12842 putative succinate de 96.1 0.03 6.4E-07 60.7 9.8 65 70-138 214-279 (574)
90 TIGR01810 betA choline dehydro 96.1 0.023 4.9E-07 61.0 8.8 68 73-144 196-266 (532)
91 PRK06263 sdhA succinate dehydr 96.1 0.029 6.2E-07 60.4 9.6 65 70-135 134-198 (543)
92 PRK07573 sdhA succinate dehydr 96.0 0.031 6.8E-07 61.2 9.7 61 74-136 174-234 (640)
93 PRK10157 putative oxidoreducta 96.0 0.037 8E-07 57.6 9.7 69 67-144 105-173 (428)
94 TIGR01789 lycopene_cycl lycope 96.0 0.8 1.7E-05 46.7 19.3 149 67-245 86-240 (370)
95 PTZ00363 rab-GDP dissociation 95.9 0.14 3.1E-06 53.4 13.7 62 70-137 232-293 (443)
96 PRK12845 3-ketosteroid-delta-1 95.9 0.038 8.3E-07 59.6 9.5 63 70-136 217-280 (564)
97 TIGR01811 sdhA_Bsu succinate d 95.9 0.04 8.6E-07 60.0 9.6 64 71-135 130-197 (603)
98 PRK07494 2-octaprenyl-6-methox 95.8 0.11 2.4E-06 53.1 12.4 69 67-144 108-176 (388)
99 PRK06175 L-aspartate oxidase; 95.8 0.042 9E-07 57.3 9.4 63 69-135 127-190 (433)
100 TIGR00292 thiazole biosynthesi 95.8 0.047 1E-06 52.6 9.1 69 67-135 97-171 (254)
101 PRK12844 3-ketosteroid-delta-1 95.8 0.041 8.8E-07 59.3 9.6 62 70-135 208-270 (557)
102 PRK11445 putative oxidoreducta 95.8 2.1 4.6E-05 43.2 21.3 70 67-143 96-165 (351)
103 TIGR02485 CobZ_N-term precorri 95.8 0.039 8.6E-07 57.4 8.8 61 70-135 123-184 (432)
104 TIGR00551 nadB L-aspartate oxi 95.7 0.045 9.8E-07 58.0 9.3 65 68-136 126-191 (488)
105 PRK10015 oxidoreductase; Provi 95.6 1.8 4E-05 45.0 20.8 68 67-143 105-172 (429)
106 PRK07804 L-aspartate oxidase; 95.6 0.064 1.4E-06 57.6 9.7 66 69-135 143-211 (541)
107 PRK08071 L-aspartate oxidase; 95.5 0.055 1.2E-06 57.7 9.1 64 68-135 128-191 (510)
108 PRK05192 tRNA uridine 5-carbox 95.5 0.036 7.8E-07 59.7 7.4 68 60-135 90-158 (618)
109 TIGR02731 phytoene_desat phyto 95.5 0.059 1.3E-06 56.4 9.0 65 69-134 212-276 (453)
110 KOG4254 Phytoene desaturase [C 95.5 0.02 4.3E-07 58.3 5.0 69 57-134 253-321 (561)
111 PRK05732 2-octaprenyl-6-methox 95.4 0.25 5.4E-06 50.5 13.2 69 67-144 109-178 (395)
112 PRK07512 L-aspartate oxidase; 95.3 0.051 1.1E-06 57.9 8.0 63 69-135 135-198 (513)
113 PRK06834 hypothetical protein; 95.3 0.06 1.3E-06 57.1 8.4 67 70-145 100-166 (488)
114 PRK12837 3-ketosteroid-delta-1 95.3 0.085 1.8E-06 56.3 9.5 68 70-141 173-244 (513)
115 PRK13977 myosin-cross-reactive 95.2 0.11 2.3E-06 55.6 9.8 95 33-137 190-296 (576)
116 PF03486 HI0933_like: HI0933-l 95.2 0.04 8.7E-07 56.9 6.5 59 69-134 108-166 (409)
117 PF13738 Pyr_redox_3: Pyridine 95.1 0.057 1.2E-06 49.6 6.7 59 68-134 80-138 (203)
118 PRK07803 sdhA succinate dehydr 95.1 0.091 2E-06 57.5 9.2 65 70-136 138-215 (626)
119 PRK06183 mhpA 3-(3-hydroxyphen 95.1 0.69 1.5E-05 49.6 15.9 69 71-144 114-183 (538)
120 PF04820 Trp_halogenase: Trypt 95.1 0.06 1.3E-06 56.5 7.5 68 65-139 149-216 (454)
121 PRK09077 L-aspartate oxidase; 95.0 0.11 2.4E-06 55.7 9.5 65 70-135 138-208 (536)
122 PRK10509 bacterioferritin-asso 95.0 0.041 8.9E-07 41.0 4.4 54 373-431 2-55 (64)
123 PRK08641 sdhA succinate dehydr 95.0 0.12 2.7E-06 56.0 10.0 66 69-135 132-201 (589)
124 PRK07843 3-ketosteroid-delta-1 95.0 0.1 2.3E-06 56.2 9.3 62 70-135 208-270 (557)
125 PRK07364 2-octaprenyl-6-methox 95.0 0.37 8.1E-06 49.6 13.2 70 69-144 120-190 (415)
126 PLN02985 squalene monooxygenas 95.0 0.75 1.6E-05 49.1 15.6 73 67-144 144-217 (514)
127 PLN02487 zeta-carotene desatur 95.0 2.9 6.2E-05 45.2 20.0 62 71-134 296-360 (569)
128 PF01946 Thi4: Thi4 family; PD 94.9 0.2 4.4E-06 46.6 9.4 73 63-136 87-167 (230)
129 PLN02815 L-aspartate oxidase 94.9 0.11 2.3E-06 56.5 8.8 67 69-135 154-223 (594)
130 COG2906 Bfd Bacterioferritin-a 94.7 0.071 1.5E-06 39.1 4.8 51 374-430 3-53 (63)
131 PRK06069 sdhA succinate dehydr 94.7 0.15 3.1E-06 55.4 9.3 64 70-135 137-201 (577)
132 TIGR02733 desat_CrtD C-3',4' d 94.6 0.13 2.8E-06 54.5 8.8 62 70-133 232-293 (492)
133 PRK09126 hypothetical protein; 94.6 0.81 1.8E-05 46.7 14.2 66 70-144 110-176 (392)
134 TIGR01176 fum_red_Fp fumarate 94.5 0.2 4.2E-06 54.4 9.9 65 70-136 132-197 (580)
135 COG1635 THI4 Ribulose 1,5-bisp 94.5 0.21 4.7E-06 46.4 8.5 74 64-138 101-182 (262)
136 PRK09231 fumarate reductase fl 94.5 0.19 4E-06 54.6 9.6 64 70-135 133-197 (582)
137 COG2081 Predicted flavoprotein 94.4 0.098 2.1E-06 52.8 6.7 60 64-131 100-164 (408)
138 PRK05329 anaerobic glycerol-3- 94.4 0.18 3.9E-06 52.3 8.9 61 69-134 258-318 (422)
139 PRK08013 oxidoreductase; Provi 94.2 0.81 1.8E-05 47.0 13.4 69 67-144 108-177 (400)
140 TIGR00275 flavoprotein, HI0933 94.2 0.26 5.6E-06 50.8 9.5 66 70-144 105-180 (400)
141 PF01134 GIDA: Glucose inhibit 94.1 0.17 3.7E-06 51.7 7.7 62 64-133 89-151 (392)
142 PRK08132 FAD-dependent oxidore 94.0 2.9 6.3E-05 45.0 17.7 68 71-144 126-194 (547)
143 PRK07395 L-aspartate oxidase; 94.0 0.15 3.3E-06 54.8 7.8 63 70-135 134-198 (553)
144 PRK07588 hypothetical protein; 93.8 1.7 3.8E-05 44.3 14.8 60 71-140 104-163 (391)
145 PRK06996 hypothetical protein; 93.7 1.7 3.7E-05 44.6 14.4 73 67-144 112-184 (398)
146 PRK08294 phenol 2-monooxygenas 93.6 6.3 0.00014 43.3 19.5 76 68-144 139-219 (634)
147 TIGR02374 nitri_red_nirB nitri 93.6 0.078 1.7E-06 59.6 4.8 56 371-431 409-464 (785)
148 PRK08163 salicylate hydroxylas 93.6 0.29 6.3E-06 50.1 8.6 69 67-143 106-175 (396)
149 TIGR03862 flavo_PP4765 unchara 93.5 0.39 8.4E-06 49.0 9.1 72 64-144 75-161 (376)
150 PF12831 FAD_oxidored: FAD dep 93.3 0.023 5E-07 59.1 0.0 73 66-144 86-158 (428)
151 COG1233 Phytoene dehydrogenase 93.3 0.17 3.8E-06 53.5 6.5 55 71-132 225-279 (487)
152 PRK08401 L-aspartate oxidase; 93.2 0.32 7E-06 51.2 8.5 60 69-137 119-178 (466)
153 PRK02106 choline dehydrogenase 93.2 0.3 6.4E-06 52.8 8.3 67 75-144 205-273 (560)
154 PRK12834 putative FAD-binding 93.2 0.37 8.1E-06 51.9 8.9 64 71-136 149-229 (549)
155 COG2509 Uncharacterized FAD-de 93.1 0.41 9E-06 49.1 8.4 66 69-141 172-237 (486)
156 PRK07190 hypothetical protein; 93.0 0.44 9.5E-06 50.5 9.1 65 71-144 110-174 (487)
157 TIGR02462 pyranose_ox pyranose 93.0 0.31 6.6E-06 52.2 7.8 61 82-142 225-288 (544)
158 COG0654 UbiH 2-polyprenyl-6-me 92.9 9.2 0.0002 39.1 18.4 66 69-142 103-169 (387)
159 COG1251 NirB NAD(P)H-nitrite r 92.9 0.12 2.6E-06 56.0 4.5 57 371-433 412-468 (793)
160 PLN02661 Putative thiazole syn 92.7 0.57 1.2E-05 47.2 8.8 63 68-132 170-242 (357)
161 PTZ00306 NADH-dependent fumara 92.0 0.67 1.4E-05 54.5 9.5 66 70-135 544-621 (1167)
162 PRK07208 hypothetical protein; 92.0 0.67 1.5E-05 48.8 8.8 71 59-133 209-279 (479)
163 PRK07045 putative monooxygenas 91.8 8.9 0.00019 39.0 16.7 62 71-139 107-169 (388)
164 PRK08243 4-hydroxybenzoate 3-m 91.7 0.87 1.9E-05 46.6 9.1 69 70-143 103-171 (392)
165 TIGR02000 NifU_proper Fe-S clu 91.6 0.26 5.6E-06 48.4 4.8 56 369-429 131-186 (290)
166 TIGR02732 zeta_caro_desat caro 91.4 0.75 1.6E-05 48.6 8.5 61 71-134 220-284 (474)
167 PRK07538 hypothetical protein; 91.3 4.8 0.0001 41.5 14.3 73 67-143 99-173 (413)
168 PRK08850 2-octaprenyl-6-methox 91.3 2.9 6.3E-05 42.9 12.6 65 71-144 112-177 (405)
169 PRK07233 hypothetical protein; 90.8 0.71 1.5E-05 47.7 7.4 56 70-133 198-253 (434)
170 PRK13800 putative oxidoreducta 90.6 1.1 2.3E-05 51.4 9.3 64 70-135 139-206 (897)
171 PRK04965 NADH:flavorubredoxin 90.1 1.2 2.6E-05 45.3 8.3 68 69-144 182-250 (377)
172 PRK06753 hypothetical protein; 89.7 11 0.00023 38.1 15.0 61 72-143 100-160 (373)
173 TIGR01292 TRX_reduct thioredox 89.7 1.3 2.8E-05 43.1 7.9 59 67-134 54-112 (300)
174 TIGR01989 COQ6 Ubiquinone bios 88.6 12 0.00025 39.0 14.6 72 67-145 114-193 (437)
175 COG2303 BetA Choline dehydroge 88.6 1.6 3.4E-05 47.0 8.2 69 73-143 205-276 (542)
176 PRK05868 hypothetical protein; 88.6 6.3 0.00014 40.1 12.3 57 76-141 110-166 (372)
177 PRK06617 2-octaprenyl-6-methox 88.6 9.4 0.0002 38.8 13.6 68 67-144 101-169 (374)
178 PF13434 K_oxygenase: L-lysine 86.9 1.6 3.5E-05 43.9 6.7 47 84-132 293-339 (341)
179 KOG2404 Fumarate reductase, fl 86.7 0.82 1.8E-05 45.0 4.1 58 84-144 159-219 (477)
180 TIGR01292 TRX_reduct thioredox 86.6 2.7 5.8E-05 40.8 8.0 56 76-134 182-238 (300)
181 COG1252 Ndh NADH dehydrogenase 86.4 3.5 7.7E-05 42.4 8.8 63 68-141 207-269 (405)
182 TIGR03467 HpnE squalene-associ 86.4 1.4 3E-05 45.1 6.1 54 74-134 201-254 (419)
183 PF13454 NAD_binding_9: FAD-NA 85.9 3.1 6.7E-05 36.7 7.2 42 83-132 113-155 (156)
184 PRK08849 2-octaprenyl-3-methyl 85.7 2.3 5E-05 43.4 7.2 65 71-144 111-176 (384)
185 PLN02172 flavin-containing mon 85.6 3.5 7.5E-05 43.4 8.6 60 71-134 112-173 (461)
186 PRK09564 coenzyme A disulfide 85.2 3.4 7.3E-05 43.0 8.3 65 70-143 191-256 (444)
187 TIGR02360 pbenz_hydroxyl 4-hyd 85.0 4.2 9.1E-05 41.6 8.8 69 70-143 103-171 (390)
188 PRK09897 hypothetical protein; 84.8 2.5 5.5E-05 45.2 7.2 51 76-133 113-165 (534)
189 PRK15317 alkyl hydroperoxide r 84.7 3.3 7.2E-05 44.2 8.1 60 67-134 263-322 (517)
190 PRK09754 phenylpropionate diox 84.2 4.5 9.8E-05 41.5 8.6 66 69-143 185-251 (396)
191 KOG1335 Dihydrolipoamide dehyd 84.2 4.9 0.00011 40.7 8.2 62 69-132 251-312 (506)
192 PRK06115 dihydrolipoamide dehy 84.2 5 0.00011 42.2 9.1 60 71-133 216-275 (466)
193 PRK05976 dihydrolipoamide dehy 83.6 5.1 0.00011 42.2 8.9 61 70-134 221-281 (472)
194 TIGR01316 gltA glutamate synth 83.4 4.4 9.5E-05 42.5 8.2 59 76-135 315-388 (449)
195 PRK06416 dihydrolipoamide dehy 83.2 5.4 0.00012 41.8 8.9 61 70-135 213-273 (462)
196 PRK06116 glutathione reductase 83.2 4.3 9.3E-05 42.4 8.1 58 70-134 208-265 (450)
197 COG3486 IucD Lysine/ornithine 83.1 2.4 5.1E-05 43.2 5.6 49 83-133 291-339 (436)
198 KOG0404 Thioredoxin reductase 83.0 1.8 3.9E-05 40.5 4.4 64 63-137 64-127 (322)
199 PRK09564 coenzyme A disulfide 82.9 5.3 0.00012 41.5 8.6 57 72-133 58-114 (444)
200 PRK12831 putative oxidoreducta 82.6 4 8.7E-05 43.0 7.5 57 78-135 326-397 (464)
201 TIGR03140 AhpF alkyl hydropero 82.5 4.6 9.9E-05 43.1 8.0 59 68-134 265-323 (515)
202 TIGR03219 salicylate_mono sali 82.4 3.7 8E-05 42.3 7.1 63 67-140 102-164 (414)
203 PLN02785 Protein HOTHEAD 82.3 5.1 0.00011 43.5 8.3 67 77-144 227-301 (587)
204 PRK06912 acoL dihydrolipoamide 82.2 6.3 0.00014 41.3 8.9 59 70-135 211-269 (458)
205 PRK05249 soluble pyridine nucl 82.0 4.3 9.4E-05 42.5 7.6 58 70-135 216-273 (461)
206 TIGR01318 gltD_gamma_fam gluta 82.0 4.6 0.0001 42.5 7.8 59 76-135 326-399 (467)
207 TIGR01350 lipoamide_DH dihydro 81.9 6.3 0.00014 41.3 8.7 60 70-135 211-270 (461)
208 PRK06475 salicylate hydroxylas 81.7 7.4 0.00016 39.9 9.0 70 68-143 105-175 (400)
209 PRK12769 putative oxidoreducta 81.7 4.6 9.9E-05 44.5 7.9 59 76-135 512-585 (654)
210 TIGR03140 AhpF alkyl hydropero 81.6 5.4 0.00012 42.6 8.2 50 83-134 401-450 (515)
211 PF01593 Amino_oxidase: Flavin 81.5 1.7 3.6E-05 44.1 4.2 55 72-134 211-265 (450)
212 PRK12810 gltD glutamate syntha 80.9 4.5 9.7E-05 42.7 7.2 66 76-143 335-411 (471)
213 PRK07818 dihydrolipoamide dehy 80.7 8.5 0.00018 40.4 9.2 61 70-134 213-273 (466)
214 PRK06370 mercuric reductase; V 80.6 7.3 0.00016 40.9 8.7 59 71-134 213-271 (463)
215 KOG1336 Monodehydroascorbate/f 80.5 4.3 9.3E-05 42.1 6.5 56 72-133 257-312 (478)
216 PRK08010 pyridine nucleotide-d 80.4 6.8 0.00015 40.8 8.3 58 70-136 199-256 (441)
217 COG1053 SdhA Succinate dehydro 80.3 3.1 6.8E-05 44.8 5.8 65 69-134 137-202 (562)
218 TIGR02053 MerA mercuric reduct 79.9 8.1 0.00018 40.5 8.7 58 71-133 208-265 (463)
219 PRK12809 putative oxidoreducta 79.8 5.3 0.00011 43.9 7.5 56 78-134 497-567 (639)
220 PRK06327 dihydrolipoamide dehy 79.7 8.6 0.00019 40.5 8.9 62 70-135 224-285 (475)
221 COG0029 NadB Aspartate oxidase 79.3 4.3 9.3E-05 42.4 6.1 72 69-142 132-204 (518)
222 PRK13512 coenzyme A disulfide 79.2 5.3 0.00012 41.6 7.1 49 81-134 69-117 (438)
223 PRK14727 putative mercuric red 78.7 8.8 0.00019 40.5 8.6 57 71-136 229-285 (479)
224 COG3075 GlpB Anaerobic glycero 78.6 3.9 8.6E-05 40.5 5.3 61 69-134 257-317 (421)
225 PF00070 Pyr_redox: Pyridine n 78.5 7 0.00015 30.0 5.9 41 69-112 39-79 (80)
226 TIGR01423 trypano_reduc trypan 78.2 7.8 0.00017 41.1 8.0 59 69-134 230-288 (486)
227 TIGR03169 Nterm_to_SelD pyridi 77.9 3.5 7.5E-05 41.7 5.1 60 64-134 48-107 (364)
228 COG0492 TrxB Thioredoxin reduc 77.3 8 0.00017 38.3 7.3 64 64-137 55-118 (305)
229 COG1249 Lpd Pyruvate/2-oxoglut 76.9 8.8 0.00019 40.3 7.7 69 69-143 213-284 (454)
230 TIGR01424 gluta_reduc_2 glutat 76.9 8.3 0.00018 40.3 7.7 57 70-134 207-263 (446)
231 PRK11749 dihydropyrimidine deh 76.6 7.8 0.00017 40.6 7.4 58 76-135 317-388 (457)
232 TIGR03143 AhpF_homolog putativ 76.6 8.8 0.00019 41.4 8.0 59 67-135 57-115 (555)
233 PRK15317 alkyl hydroperoxide r 76.5 9.4 0.0002 40.8 8.1 50 83-134 400-449 (517)
234 PLN02927 antheraxanthin epoxid 74.9 8.9 0.00019 42.2 7.4 54 83-144 204-258 (668)
235 PRK10262 thioredoxin reductase 74.2 13 0.00028 36.8 7.9 63 72-136 187-250 (321)
236 PF00996 GDI: GDP dissociation 73.7 14 0.00031 38.5 8.2 62 59-129 223-284 (438)
237 PRK14694 putative mercuric red 73.6 14 0.00031 38.8 8.5 58 70-136 218-275 (468)
238 PLN02676 polyamine oxidase 73.4 7.4 0.00016 41.3 6.3 56 71-134 225-286 (487)
239 PRK07251 pyridine nucleotide-d 73.1 15 0.00032 38.2 8.4 56 71-135 199-254 (438)
240 PF13434 K_oxygenase: L-lysine 72.9 12 0.00025 37.8 7.2 64 67-131 90-156 (341)
241 TIGR03385 CoA_CoA_reduc CoA-di 72.4 8.9 0.00019 39.7 6.5 46 81-133 55-102 (427)
242 TIGR03385 CoA_CoA_reduc CoA-di 72.3 15 0.00032 38.1 8.1 64 70-143 179-243 (427)
243 PTZ00318 NADH dehydrogenase-li 71.8 11 0.00024 39.1 7.0 62 70-143 228-289 (424)
244 PRK12778 putative bifunctional 71.6 13 0.00028 41.8 8.0 58 78-136 616-688 (752)
245 TIGR01421 gluta_reduc_1 glutat 71.0 15 0.00033 38.4 7.9 60 70-135 207-266 (450)
246 PLN02507 glutathione reductase 70.8 14 0.0003 39.3 7.6 58 70-135 244-301 (499)
247 TIGR02374 nitri_red_nirB nitri 70.8 12 0.00026 42.2 7.5 58 371-431 471-528 (785)
248 PRK12416 protoporphyrinogen ox 70.4 9 0.00019 40.1 6.1 52 71-132 227-278 (463)
249 PRK06567 putative bifunctional 70.3 9.6 0.00021 43.6 6.5 61 73-134 643-728 (1028)
250 PLN02268 probable polyamine ox 69.8 12 0.00025 38.9 6.7 45 82-134 208-252 (435)
251 COG0445 GidA Flavin-dependent 69.8 3.9 8.5E-05 43.3 3.1 68 60-134 90-158 (621)
252 COG2072 TrkA Predicted flavopr 69.3 9.5 0.00021 39.9 5.9 114 15-135 19-145 (443)
253 PF07992 Pyr_redox_2: Pyridine 69.3 12 0.00027 33.7 6.1 55 75-133 63-121 (201)
254 PRK07236 hypothetical protein; 68.7 15 0.00032 37.4 7.1 49 84-141 112-160 (386)
255 COG1232 HemY Protoporphyrinoge 68.6 1.2E+02 0.0025 31.8 13.6 60 71-143 216-275 (444)
256 TIGR03169 Nterm_to_SelD pyridi 68.5 16 0.00034 36.9 7.2 61 70-142 191-251 (364)
257 TIGR01438 TGR thioredoxin and 67.8 21 0.00045 37.9 8.1 60 70-134 220-279 (484)
258 PRK12775 putative trifunctiona 67.7 16 0.00034 42.5 7.7 58 77-135 616-687 (1006)
259 PRK11883 protoporphyrinogen ox 66.9 11 0.00023 39.2 5.7 52 72-133 223-274 (451)
260 PRK07845 flavoprotein disulfid 66.6 19 0.0004 37.9 7.5 57 71-135 219-275 (466)
261 PRK12770 putative glutamate sy 66.5 19 0.0004 36.3 7.3 58 76-136 216-288 (352)
262 PTZ00367 squalene epoxidase; P 66.3 1.4E+02 0.0029 32.5 14.1 71 71-143 132-227 (567)
263 PRK13748 putative mercuric red 66.0 24 0.00052 38.0 8.4 57 70-135 310-366 (561)
264 PRK12771 putative glutamate sy 65.8 18 0.00039 39.1 7.4 58 76-135 311-381 (564)
265 COG1148 HdrA Heterodisulfide r 65.5 16 0.00035 38.2 6.4 96 37-144 391-490 (622)
266 PRK12779 putative bifunctional 65.1 24 0.00051 40.8 8.4 61 77-137 491-565 (944)
267 PTZ00058 glutathione reductase 63.9 29 0.00063 37.5 8.4 58 70-133 278-335 (561)
268 PRK04965 NADH:flavorubredoxin 63.8 19 0.00041 36.5 6.8 58 66-134 53-111 (377)
269 PF00743 FMO-like: Flavin-bind 63.6 19 0.00042 38.6 7.0 62 71-134 85-150 (531)
270 PRK13984 putative oxidoreducta 63.0 22 0.00047 38.8 7.4 55 78-134 470-538 (604)
271 KOG1298 Squalene monooxygenase 62.9 61 0.0013 33.2 9.6 72 67-142 144-216 (509)
272 PTZ00052 thioredoxin reductase 62.1 26 0.00057 37.2 7.6 56 71-134 223-278 (499)
273 PTZ00217 flap endonuclease-1; 60.9 1E+02 0.0023 31.7 11.4 93 341-448 242-334 (393)
274 KOG1346 Programmed cell death 60.6 10 0.00022 38.9 3.8 69 67-143 390-459 (659)
275 TIGR00562 proto_IX_ox protopor 60.5 21 0.00045 37.2 6.5 52 72-133 227-278 (462)
276 PRK09754 phenylpropionate diox 60.0 20 0.00042 36.8 6.1 44 81-134 69-112 (396)
277 KOG2415 Electron transfer flav 57.2 20 0.00044 36.8 5.3 75 68-143 181-268 (621)
278 PTZ00153 lipoamide dehydrogena 57.1 48 0.001 36.7 8.7 62 72-134 355-427 (659)
279 PRK06467 dihydrolipoamide dehy 57.1 44 0.00095 35.2 8.2 59 71-134 216-274 (471)
280 PTZ00318 NADH dehydrogenase-li 54.1 30 0.00064 35.9 6.3 64 65-134 57-125 (424)
281 PRK12814 putative NADPH-depend 53.4 43 0.00093 37.0 7.7 56 77-134 368-437 (652)
282 PRK10262 thioredoxin reductase 52.9 69 0.0015 31.5 8.5 58 67-134 60-117 (321)
283 PRK13512 coenzyme A disulfide 52.2 35 0.00075 35.5 6.5 62 70-143 189-251 (438)
284 PLN02576 protoporphyrinogen ox 52.0 46 0.001 35.0 7.5 55 71-132 240-295 (496)
285 TIGR01372 soxA sarcosine oxida 50.9 58 0.0012 37.9 8.5 67 73-143 354-421 (985)
286 PRK06292 dihydrolipoamide dehy 50.0 71 0.0015 33.3 8.4 58 70-133 210-267 (460)
287 PRK07846 mycothione reductase; 49.5 45 0.00097 34.9 6.8 49 79-135 215-263 (451)
288 PLN02568 polyamine oxidase 48.8 43 0.00093 36.0 6.6 53 71-133 243-295 (539)
289 TIGR03452 mycothione_red mycot 48.2 56 0.0012 34.2 7.3 48 79-134 218-265 (452)
290 COG1252 Ndh NADH dehydrogenase 46.5 32 0.0007 35.5 5.0 100 15-137 14-114 (405)
291 PLN02546 glutathione reductase 45.6 97 0.0021 33.5 8.7 59 70-135 293-351 (558)
292 PRK14989 nitrite reductase sub 44.7 31 0.00067 39.3 5.0 57 370-431 481-537 (847)
293 PF05402 PqqD: Coenzyme PQQ sy 43.7 43 0.00093 24.6 4.1 40 413-452 26-65 (68)
294 PLN02529 lysine-specific histo 39.8 78 0.0017 35.4 7.0 41 84-133 366-406 (738)
295 PF07156 Prenylcys_lyase: Pren 39.6 71 0.0015 32.6 6.2 58 69-133 127-185 (368)
296 TIGR03143 AhpF_homolog putativ 37.5 1.3E+02 0.0027 32.5 8.1 51 82-135 191-247 (555)
297 PRK07845 flavoprotein disulfid 36.5 1.2E+02 0.0027 31.7 7.7 52 76-134 98-151 (466)
298 PF06100 Strep_67kDa_ant: Stre 34.5 2.3E+02 0.005 30.0 9.0 64 71-136 208-276 (500)
299 KOG2311 NAD/FAD-utilizing prot 33.5 54 0.0012 34.5 4.1 70 59-134 113-186 (679)
300 PRK12770 putative glutamate sy 31.7 29 0.00064 34.8 2.0 64 70-137 68-133 (352)
301 PLN02328 lysine-specific histo 31.5 95 0.0021 35.2 6.0 50 71-134 438-487 (808)
302 PLN02507 glutathione reductase 30.7 1.3E+02 0.0028 31.9 6.8 45 80-133 134-178 (499)
303 PF14490 HHH_4: Helix-hairpin- 30.6 1.5E+02 0.0033 23.5 5.7 23 341-363 19-41 (94)
304 COG3573 Predicted oxidoreducta 30.5 1.2E+02 0.0027 30.4 5.9 54 77-133 159-227 (552)
305 KOG1346 Programmed cell death 30.5 75 0.0016 32.8 4.5 62 60-136 251-313 (659)
306 COG4529 Uncharacterized protei 30.5 1.2E+02 0.0026 31.8 6.2 64 63-132 91-162 (474)
307 TIGR03315 Se_ygfK putative sel 30.1 1.7E+02 0.0037 34.1 7.9 63 77-143 712-786 (1012)
308 PLN03000 amine oxidase 29.4 1.1E+02 0.0023 35.1 6.0 49 71-133 382-430 (881)
309 TIGR01317 GOGAT_sm_gam glutama 28.3 1.5E+02 0.0033 31.3 6.8 50 83-133 349-413 (485)
310 PLN02852 ferredoxin-NADP+ redu 27.4 2E+02 0.0044 30.6 7.4 51 83-134 288-354 (491)
311 COG0446 HcaD Uncharacterized N 27.2 2.5E+02 0.0055 28.1 8.1 64 70-140 178-244 (415)
312 KOG1399 Flavin-containing mono 27.0 2.2E+02 0.0047 29.9 7.5 63 69-134 88-153 (448)
313 COG1251 NirB NAD(P)H-nitrite r 26.4 95 0.0021 34.4 4.7 53 371-428 472-524 (793)
314 PRK09853 putative selenate red 26.4 1.7E+02 0.0037 34.1 7.0 56 77-135 714-780 (1019)
315 TIGR01424 gluta_reduc_2 glutat 26.2 1.7E+02 0.0036 30.5 6.6 47 75-133 95-141 (446)
316 PRK06327 dihydrolipoamide dehy 25.7 2.1E+02 0.0045 30.1 7.2 49 79-134 109-157 (475)
317 KOG1238 Glucose dehydrogenase/ 25.7 2E+02 0.0043 31.4 6.9 60 84-144 268-329 (623)
318 PRK08255 salicylyl-CoA 5-hydro 25.3 66 0.0014 36.2 3.6 47 69-135 96-142 (765)
319 PRK05249 soluble pyridine nucl 25.2 2E+02 0.0043 29.9 7.0 48 77-133 101-148 (461)
320 COG1231 Monoamine oxidase [Ami 24.6 2.2E+02 0.0047 29.8 6.7 56 68-131 203-259 (450)
321 PRK05976 dihydrolipoamide dehy 24.4 2.2E+02 0.0048 29.8 7.1 52 78-134 100-154 (472)
322 PRK06467 dihydrolipoamide dehy 23.6 2.2E+02 0.0048 29.9 7.0 45 80-133 103-147 (471)
323 PRK14694 putative mercuric red 23.2 1.3E+02 0.0027 31.7 5.0 41 84-133 111-151 (468)
324 KOG1439 RAB proteins geranylge 21.4 2.2E+02 0.0048 29.3 5.9 64 71-142 233-296 (440)
325 PRK06115 dihydrolipoamide dehy 21.3 2.5E+02 0.0054 29.4 6.8 45 81-134 104-148 (466)
No 1
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=100.00 E-value=4.9e-78 Score=647.13 Aligned_cols=462 Identities=84% Similarity=1.306 Sum_probs=399.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCCCCCCceeeCHHHHHHhCCCccccccccCceEEEEecCeeEchhHHHHHHHHHHH
Q 012358 2 TPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAA 81 (465)
Q Consensus 2 ~P~~~~~~~~~~~~gl~lyd~l~~~~~~~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~ 81 (465)
+|+++++..++++.|+++||.+++..+++.+++|+++|+++++|.|+++.+...+.|+++|+||++||.+++.++++.|.
T Consensus 164 ~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~L~~~~~~~~l~ga~~~~Dg~vdp~rl~~al~~~A~ 243 (627)
T PLN02464 164 TPCYDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPTLAKKGKDGSLKGTVVYYDGQMNDSRLNVALACTAA 243 (627)
T ss_pred eeccchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCCCCccccccceeEEEEecCcEEcHHHHHHHHHHHHH
Confidence 56777777888999999999998877888889999999999999998621111378899889999999999999999999
Q ss_pred hCCCEEEcceeEEEEEEcC-CCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeC
Q 012358 82 LAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLP 160 (465)
Q Consensus 82 ~~Ga~i~~~t~V~~i~~~~-~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~ 160 (465)
++|++++++++|+++..++ +| ++++|++.|..+|+.++|.|+.||||||+|+++|.++++....+.|.|.||+|++++
T Consensus 244 ~~Ga~i~~~~~V~~l~~~~~~g-~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~~~~~I~p~kG~hlvl~ 322 (627)
T PLN02464 244 LAGAAVLNYAEVVSLIKDESTG-RIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGKAKPMICPSSGVHIVLP 322 (627)
T ss_pred hCCcEEEeccEEEEEEEecCCC-cEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccCcCCCceEeeeeEEEecc
Confidence 9999999999999998763 34 788999987767776789999999999999999999987544445999999999998
Q ss_pred CCCCCCCceEEeeccCCCcEEEEEecCCeEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccc-cCCcCCeeEeeeee
Q 012358 161 DYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNV-KVRRTDVLSAWSGI 239 (465)
Q Consensus 161 ~~~~~~~~~~~~~~~~dgr~~~~~P~~g~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p-~L~~~~i~~~waG~ 239 (465)
....+...+++++.+.|+|++|++||.|.+++|+|+++.+.+.++.++++++++|++.++++| | .+...+|+++|+|+
T Consensus 323 ~~~~~~~~~~i~~~~~dgr~~~~~P~~g~~liGtTd~~~~~~~~~~~t~~ei~~Ll~~a~~~~-~~~l~~~~v~~~waG~ 401 (627)
T PLN02464 323 DYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSKTPITMLPEPHEDEIQFILDAISDYL-NVKVRRSDVLSAWSGI 401 (627)
T ss_pred cccCCCCceEEecCCCCCCEEEEEecCCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhh-CCCCChhhEEEEEEeE
Confidence 654444445677766789999999998899999999886655678899999999999999999 6 79999999999999
Q ss_pred eecccCCCCCCCCCcccceeeeecCCCeEEEeCCchhchHHHHHHHHHHHHHcCCCCCCCCCCcccccccCCCCCCcchH
Q 012358 240 RPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLTQNLRLVGGDGWDPSSF 319 (465)
Q Consensus 240 RP~~~d~~~~~~~~~~r~~~i~~~~~gli~v~Ggk~Tt~r~~Ae~v~d~~~~~~~l~~~~~~~t~~~~l~g~~~~~~~~~ 319 (465)
||+++|+.+..+..++|+|.|..+.+|+|+++||||||||+|||+++|.+++...+...++|.|..+||+|+..+.....
T Consensus 402 RPl~~d~~~~~~~~~sr~~~i~~~~~gli~i~GGk~Tt~R~mAe~~~d~~~~~~~l~~~~~~~t~~~~l~g~~~~~~~~~ 481 (627)
T PLN02464 402 RPLAVDPSAKSTESISRDHVVCEEPDGLVTITGGKWTTYRSMAEDAVDAAIKSGKLSPTNGCVTTDLPLVGAEGYEPSLF 481 (627)
T ss_pred EeeccCCCCCcccccCCceEEEecCCCeEEEECChHHHHHHHHHHHHHHHHHhcccCCCCCCCcCCcccCCCCccchhhH
Confidence 99998764556788899999987778999999999999999999999999986545556689999999999877654333
Q ss_pred HHHHHHHhhhhhccCCCcCCCCCCHHHHHHHHHHhCccHHHHHHHHhccCCCCccccCCCccHHHHHHHHHhcccCChhH
Q 012358 320 TVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHGYPFLEAEVAYCARNEYCESAVD 399 (465)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~a~~v~~~~~~~~~~~~v~~~~~~~~aEi~~ai~~E~a~~l~D 399 (465)
..+.+.+...+..+|++.....++.+.+++|+++||+++.+|+++++++.+++++|+|++++++||+||+++|||.|+.|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~a~~v~~~~~~~~~~~~~~~~~~~~~aEv~~ai~~e~a~~~~D 561 (627)
T PLN02464 482 TQLAQQYVRMKRTYGGKVVPGAMDTAAAKHLAHAYGGRADRVAEIAQNEGLGKRLAHGYPFLEAEVAYCARHEYCESAVD 561 (627)
T ss_pred HHHHHHhhhhhhhccccccccCCCHHHHHHHHHhhchHHHHHHhhccccccccccccCCCcHHHHHHHHHHccCcCCHHH
Confidence 33444443222333333334458999999999999999999999887777899999999999999999999999999999
Q ss_pred HHHhhcccCcCChHHHhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcccccccccCCCCC
Q 012358 400 FVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRRKQELQKAKEFLETFKSSKNKQFHDGKHK 465 (465)
Q Consensus 400 ~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~lgw~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (465)
+|+||||++|++.|++.+|+++|+++|+++|||+++++++|++.+++++++++..+|.|||||||+
T Consensus 562 ~l~RRtrl~~~~~~~~~~~~~~v~~i~a~~l~w~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (627)
T PLN02464 562 FIARRTRLAFLDTDAAVRALPRVVEILAAEHGWDKSRKKQELQKAKEFLETFKSSKNAQFNDGKHN 627 (627)
T ss_pred HHHHhccCcccChhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcccccccccccCC
Confidence 999999999988999999999999999999999999999999999999999999999999999996
No 2
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.2e-80 Score=615.39 Aligned_cols=435 Identities=54% Similarity=0.945 Sum_probs=402.4
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhCCCCCCCceeeCHHHHHHhCCCccccccccCceEEEEecCeeEchhHHHHHHHHHH
Q 012358 1 MTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTA 80 (465)
Q Consensus 1 ~~P~~~~~~~~~~~~gl~lyd~l~~~~~~~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A 80 (465)
|+|+|+||..||||.|+++||+++|.+++..+.++|+++..+++|.|+.+ ++.|++.|+|||.|++|++.+++-.|
T Consensus 159 mlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~----~L~Ga~VYyDGQ~nDaRmnl~vAlTA 234 (680)
T KOG0042|consen 159 MLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKD----NLKGAMVYYDGQHNDARMNLAVALTA 234 (680)
T ss_pred eeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCcccccc----CceeEEEEecCCCchHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999987 99999999999999999999999999
Q ss_pred HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeC
Q 012358 81 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLP 160 (465)
Q Consensus 81 ~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~ 160 (465)
.++||.++||++|.++.++.+| ++.|+++.|.+||++++|+|+.|||||||++|.|++|...+.+..+.|+.|+|+|+|
T Consensus 235 ~r~GA~v~Nh~ev~~Llkd~~~-kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~~~i~~pSsGvHIVlP 313 (680)
T KOG0042|consen 235 ARNGATVLNHVEVVSLLKDKDG-KVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDEDAKPICVPSSGVHIVLP 313 (680)
T ss_pred HhcchhhhhHHHHHHHhhCCCC-ceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhcccccCceeccCCceeEEcc
Confidence 9999999999999999998876 899999999999999999999999999999999999998777778899999999999
Q ss_pred CCCCCCCceEEeeccCCCcEEEEEecCCeEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhcc--ccCCcCCeeEeeee
Q 012358 161 DYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLN--VKVRRTDVLSAWSG 238 (465)
Q Consensus 161 ~~~~~~~~~~~~~~~~dgr~~~~~P~~g~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~--p~L~~~~i~~~waG 238 (465)
.-+.|.+.+++.|.|+|||++|+.||.|.+++|+||.+...+.++.+++++|+++++.+++++. +.+.+.||.++|+|
T Consensus 314 ~yY~P~~mGlldP~TsDgRViFflPWqg~TIaGTTD~pt~v~~~P~PtE~dIqfIL~ev~~yl~~~~~VrR~DVlsaWsG 393 (680)
T KOG0042|consen 314 GYYCPENMGLLDPKTSDGRVIFFLPWQGKTIAGTTDIPTSVTHSPTPTEDDIQFILKEVQHYLSFDVEVRREDVLSAWSG 393 (680)
T ss_pred cccCCcccccccCCCCCCcEEEEeccCCceeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCcccchhhhHHHhhC
Confidence 9989999999999999999999999999999999999865667889999999999999999994 45899999999999
Q ss_pred eeecccCCCC-CCCCCcccceeeeecCCCeEEEeCCchhchHHHHHHHHHHHHHcCCCCC-CCCCCcccccccCCCCCCc
Q 012358 239 IRPLAMDPSA-KNTESISRDHVVCEDFPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNP-SNGCLTQNLRLVGGDGWDP 316 (465)
Q Consensus 239 ~RP~~~d~~~-~~~~~~~r~~~i~~~~~gli~v~Ggk~Tt~r~~Ae~v~d~~~~~~~l~~-~~~~~t~~~~l~g~~~~~~ 316 (465)
+||++.|+.. .++..+.|+|.|..+++|||+++||||||||.|||+++|.+++..+|.+ .++|.|+++.|.|+++|.+
T Consensus 394 iRPLv~DP~~~~~t~sl~R~H~v~~~~~gLiTIaGGKWTTyR~MAEeTVd~aI~~~~lk~~~~~cvT~~l~l~Ga~~wt~ 473 (680)
T KOG0042|consen 394 IRPLVRDPKKVKDTQSLVRNHFVFVSPSGLITIAGGKWTTYRHMAEETVDAAIKAGDLKPARKPCVTKKLKLEGAEGWTP 473 (680)
T ss_pred CcccccCCCccccchhhhhhceEEecCCCeEEEecCcchhHHHHHHHHHHHHHHhCCCCCCCCcccccceEEeccCCCcH
Confidence 9999998743 5788999999999999999999999999999999999999999888866 5679999999999999998
Q ss_pred chHHHHHHHHhhhhhccCCCcCCCCCCHHHHHHHHHHhCccHHHHHHHHhccCC-----CCccccCCCccHHHHHHHHHh
Q 012358 317 SSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNEGL-----GKRLAHGYPFLEAEVAYCARN 391 (465)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~a~~v~~~~~~~~~-----~~~v~~~~~~~~aEi~~ai~~ 391 (465)
.+...+.+.|+ ++.+.++||...||++|..|+.++..... +.++++..||++|||+|++.+
T Consensus 474 ~~~~~LvQdyg--------------~e~~vA~hLs~tYG~rA~~Va~~~k~tgkk~Pivg~rl~~~fpyleAEv~y~v~~ 539 (680)
T KOG0042|consen 474 NMYIRLVQDYG--------------MESDVAQHLSQTYGDRAFRVAKMAKSTGKKWPIVGKRLHPEFPYLEAEVRYGVVR 539 (680)
T ss_pred HHHHHHHHHhC--------------CcHHHHHHHHHhhcchHHHHHHHHHhcCCcCccccccccCCCCchHHHHHhhhhH
Confidence 88888888887 99999999999999999999999875443 788999999999999999999
Q ss_pred cccCChhHHHHhh--------------------------------------------cccCcCCh-HHHhhhhHHHHHHH
Q 012358 392 EYCESAVDFVARR--------------------------------------------CRLAFLDT-DAAGRALPRIIEIM 426 (465)
Q Consensus 392 E~a~~l~D~l~RR--------------------------------------------t~~~~~~~-~~~~~~~~~v~~~~ 426 (465)
|+|+++.|++.|| +|+++++. ..+..++..+.++|
T Consensus 540 e~a~~~~Dv~arr~r~~~~q~~~ar~fl~~~mg~~~~~~~~~~~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vl 619 (680)
T KOG0042|consen 540 EYACTPVDVIARRLREKKKQIEYARTFLNSEMGLSKESTSQMSIPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVL 619 (680)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 9999999999999 66888887 77888999999999
Q ss_pred HHHc-CCCHHHHHHHHHHHHHHHHHhccc
Q 012358 427 ATEH-KWDKSRRKQELQKAKEFLETFKSS 454 (465)
Q Consensus 427 a~~l-gw~~~~~~~e~~~~~~~~~~~~~~ 454 (465)
.++. +|++++.++++.++..++..+...
T Consensus 620 k~~~~~~d~~~~~~~l~ea~~~~~g~v~l 648 (680)
T KOG0042|consen 620 KSENVGWDEDRLHEELQEADENLNGFVEL 648 (680)
T ss_pred HHhcCCCCHHHHHHHHHHHHHhhcceeeH
Confidence 9999 999999999999876665444333
No 3
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=6.3e-73 Score=580.02 Aligned_cols=426 Identities=36% Similarity=0.529 Sum_probs=376.1
Q ss_pred CCCCCC-CchHHHHHHHHHHHHHhhC-CCCCCCceeeCHHHHHHhCCCccccccccCceEEEEecCeeEchhHHHHHHHH
Q 012358 1 MTPCFD-WFEVVYYWVGLKMYDLVAG-RHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLAL 78 (465)
Q Consensus 1 ~~P~~~-~~~~~~~~~gl~lyd~l~~-~~~~~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~ 78 (465)
+||+|+ +++.++++.||++||+|++ ++..|.++.++.++..+++|.++++ ++.|++.|+|+++||+||+..+++
T Consensus 97 ~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~----~l~ga~~y~D~~vddaRLv~~~a~ 172 (532)
T COG0578 97 LLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKD----GLKGAFRYPDGVVDDARLVAANAR 172 (532)
T ss_pred eEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchh----hccceEEEccceechHHHHHHHHH
Confidence 578887 6889999999999999998 7888999999999999999999987 899999999999999999999999
Q ss_pred HHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCC--CceeecceeE
Q 012358 79 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ--PMICPSSGVH 156 (465)
Q Consensus 79 ~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~--~~i~p~kG~~ 156 (465)
.|.++|+++++|++|+++.+++ .++||.+.|..||++++|+|+.||||||||+++|.++.+...+ ..|+|+||+|
T Consensus 173 ~A~~~Ga~il~~~~v~~~~re~---~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skGsH 249 (532)
T COG0578 173 DAAEHGAEILTYTRVESLRREG---GVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKGSH 249 (532)
T ss_pred HHHhcccchhhcceeeeeeecC---CEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccceE
Confidence 9999999999999999999875 3899999999999999999999999999999999999865422 2599999999
Q ss_pred EEeCCCCCCCCceEEeeccCCCcEEEEEecCCeEEEcccCCCCC-CCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEe
Q 012358 157 IVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTV-ITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSA 235 (465)
Q Consensus 157 lv~~~~~~~~~~~~~~~~~~dgr~~~~~P~~g~~liG~td~~~~-~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~ 235 (465)
+|+++ +.+...+++++.++|+|++|++||.+.++|||||.+++ +++++.++++|++||++.++.+|.|.++..||.++
T Consensus 250 lVv~~-~~~~~~a~~~~~~~d~r~~f~iP~~~~~liGTTD~~~~~~~~~~~~~~eEidyll~~~~~~~~~~l~~~dI~~s 328 (532)
T COG0578 250 LVVDK-KFPINQAVINRCRKDGRIVFAIPYEGKTLIGTTDTDYDGDPEDPRITEEEIDYLLDAVNRYLAPPLTREDILST 328 (532)
T ss_pred EEecc-cCCCCceEEeecCCCCceEEEecCCCCEEeeccccccCCCcccCCCCHHHHHHHHHHHHhhhhccCChhheeee
Confidence 99998 56677788888667999999999999899999999988 58999999999999999999777689999999999
Q ss_pred eeeeeecccCCCCCCCCCcccceeeeecC--CCeEEEeCCchhchHHHHHHHHHHHHHcCCCCCCCCCCcccccccCCCC
Q 012358 236 WSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLTQNLRLVGGDG 313 (465)
Q Consensus 236 waG~RP~~~d~~~~~~~~~~r~~~i~~~~--~gli~v~Ggk~Tt~r~~Ae~v~d~~~~~~~l~~~~~~~t~~~~l~g~~~ 313 (465)
|+|+||+..++ .++++.++|+|.|..+. +|+|+++||||||||.|||+++|.++++++.. ++|.|+..||+|+++
T Consensus 329 yaGVRPL~~~~-~~~~~~isR~~~l~~~~~~~glltv~GGKlTTyR~maE~a~d~v~~~lg~~--~~~~t~~~~LpGg~~ 405 (532)
T COG0578 329 YAGVRPLVDDG-DDDTSAISRDHVLFDHAELAGLLTVAGGKLTTYRKMAEDALDAVCEKLGIR--PPCTTADLPLPGGDE 405 (532)
T ss_pred eeeeeeccCCC-CCchhhccCceEEEecCCCCCeEEEecchhHHhHHHHHHHHHHHHHhcCCC--CCcccCCCCCCCCCc
Confidence 99999999865 45789999999999877 89999999999999999999999999987654 689999999999873
Q ss_pred CCcchHHHHHHHHhhhhhccCCCcCCCCCCHHHHHHHHHHhCccHHHHHHHHhc-cCCCCccccCCCccHHHHHHHHHhc
Q 012358 314 WDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQN-EGLGKRLAHGYPFLEAEVAYCARNE 392 (465)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~a~~v~~~~~~-~~~~~~v~~~~~~~~aEi~~ai~~E 392 (465)
.. .......+.. .....++...++||.++||+++..+++++.. .+.++. ....++++|++|++++|
T Consensus 406 ~~--~~~~~~~~~~---------~~~~~l~~~~~r~l~~~YGs~~~~l~~~~~~~~~~~~~--~~~~~~~ael~y~~~~E 472 (532)
T COG0578 406 NA--ALAELAAALG---------AAYPGLPSALARHLARLYGSRAELLLALAAVLADLGEH--ALSDLYEAELRYLVRHE 472 (532)
T ss_pred ch--hhHHHHHHhc---------cccCCCcHHHHHHHHHhhCcCHHHHHHHhhhccccccc--cCCcchHHHHHHHHHhh
Confidence 22 1111111111 1223589999999999999999999998753 343333 36778999999999999
Q ss_pred ccCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 012358 393 YCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRRKQELQKAKEFLETF 451 (465)
Q Consensus 393 ~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~lgw~~~~~~~e~~~~~~~~~~~ 451 (465)
||.|+.|+|.|||+++++...+ ..|.++++.+|+.+++|+.++..+|.+++.+.+..+
T Consensus 473 ~a~~~~D~l~RRt~~~l~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 530 (532)
T COG0578 473 MALTLEDILARRTKLGLLLADV-LAAADAVAAVMAEELGWSAERPAAEGQALREALFTY 530 (532)
T ss_pred hcCCHHHHHHHHHHhhhccccc-hhhHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHhh
Confidence 9999999999999999988888 899999999999999999999999999999888765
No 4
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=100.00 E-value=4.7e-62 Score=516.37 Aligned_cols=380 Identities=25% Similarity=0.306 Sum_probs=323.0
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARI 110 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~ 110 (465)
++++++++|+++++|.+++ ++.|+++++||++||++++.++++.|.++||+|+++++|++|..++ + ++++|++
T Consensus 94 ~~~~l~~~e~~~~~P~l~~-----~~~ga~~~~dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~-~v~gv~v 166 (516)
T TIGR03377 94 PAEEIDPAEALRLEPNLNP-----DLIGAVKVPDGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREG-G-RVTGVKV 166 (516)
T ss_pred CceEECHHHHHHHCCCCCh-----hheEEEEeCCcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC-C-EEEEEEE
Confidence 4899999999999999976 5889999999999999999999999999999999999999998865 3 7889998
Q ss_pred EECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccCCCcEEEEEecCCeE
Q 012358 111 RNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRT 190 (465)
Q Consensus 111 ~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dgr~~~~~P~~g~~ 190 (465)
.|..+|+.++|.|++||||||+|+++|.+++|.+ .+|.|.||+|++++....+.....+. .+.+++ |++|+++.+
T Consensus 167 ~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~--~~i~p~kG~~lv~~~~~~~~~~~~~~-~~~~g~--~~~P~~~~~ 241 (516)
T TIGR03377 167 EDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLD--IRMFPAKGALLIMNHRINNTVINRCR-KPSDAD--ILVPGDTIS 241 (516)
T ss_pred EEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCC--CceecceEEEEEECCccccccccccc-CCCCCc--EEEECCCeE
Confidence 8766777778999999999999999999999875 46999999999997543221111111 234554 578998899
Q ss_pred EEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeec-----CC
Q 012358 191 VAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-----FP 265 (465)
Q Consensus 191 liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~-----~~ 265 (465)
++|+|+.+.+++++..++++++++|++.++++| |.|...+|+++|+|+||++.++....+..++|+|.|..+ .+
T Consensus 242 liGtT~~~~~~~~~~~~~~~~v~~ll~~~~~~~-P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~i~~~~~~~~~~ 320 (516)
T TIGR03377 242 IIGTTSERIDDPDDLPVTQEEVDVLLREGAKLA-PMLAQTRILRAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGLP 320 (516)
T ss_pred EEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhC-cccccCCEEEEEeecccccCCCCCCCccccCCCeEEeecccccCCC
Confidence 999999876666777899999999999999999 899999999999999999876433446788999988753 26
Q ss_pred CeEEEeCCchhchHHHHHHHHHHHHHcCCCCCCCCCCcccccccCCCCCCcchHHHHHHHHhhhhhccCCCcCCCCCCHH
Q 012358 266 GLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLTQNLRLVGGDGWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTA 345 (465)
Q Consensus 266 gli~v~Ggk~Tt~r~~Ae~v~d~~~~~~~l~~~~~~~t~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (465)
|+|+++||||||||+|||+++|.+++.++ ...+|.|++.||+|+.++.. ...+...+ .++.+
T Consensus 321 g~i~i~GGkltt~r~~Ae~~~d~~~~~l~--~~~~~~t~~~~l~~~~~~~~--~~~~~~~~--------------~~~~~ 382 (516)
T TIGR03377 321 GFITITGGKLTTYRLMAEWATDVVCKKLG--NDRPCRTADEPLPGSEDPTA--VKTLKKLI--------------SLPSP 382 (516)
T ss_pred CeEEEecchHHHHHHHHHHHHHHHHHHcC--CCCCCCCCCccccCccchHH--HHHHHHHh--------------CCCHH
Confidence 89999999999999999999999998764 34589999999999865432 11222222 28899
Q ss_pred HHHHHHHHhCccHHHHHHHHhccCCCCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhHHHHHH
Q 012358 346 VAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEI 425 (465)
Q Consensus 346 ~~~~l~~~yG~~a~~v~~~~~~~~~~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~ 425 (465)
.++++..+||+++.+|++. ++...+++|+|++++++||+||+++|++.|++| |+||||+|| ++|||.+|.++++++
T Consensus 383 ~~~~~~~~~g~~~~~~~~~--~~~~~~~ic~ce~v~~~Ei~~ai~~~~a~~l~d-l~RRtr~gm-g~cqg~~c~~~~~~~ 458 (516)
T TIGR03377 383 IAGSAVYRHGERAPQVLKD--NRLDNQVICECEMVTAGEVEYAIRELDVNNLVD-LRRRTRLGM-GTCQGEFCAYRAAGL 458 (516)
T ss_pred HHHHHHHhhCccHHHHHhc--ccCCCCcCCCCccccHHHHHHHHHhcCCCCHHH-HHHHHhcCc-CccccchHHHHHHHH
Confidence 9999999999999998763 345668999999999999999999999999999 899999999 799999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHH
Q 012358 426 MATEHKWDKSRRKQELQKAK 445 (465)
Q Consensus 426 ~a~~lgw~~~~~~~e~~~~~ 445 (465)
|+++++|++++...+++.|.
T Consensus 459 ~~~~~~~~~~~~~~~l~~f~ 478 (516)
T TIGR03377 459 LSREGLIDPEQSTELLREFL 478 (516)
T ss_pred HHHhhCCChhhhHHHHHHHH
Confidence 99999999999998887764
No 5
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=100.00 E-value=1.3e-59 Score=499.28 Aligned_cols=377 Identities=24% Similarity=0.286 Sum_probs=319.4
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARI 110 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~ 110 (465)
++++|+++|+++++|.+++ ++.|+++++||++||.+++.++++.|.++|++++++++|+++..++ + ++++|++
T Consensus 115 ~~~~l~~~e~~~~eP~l~~-----~~~ga~~~~dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~-~v~gv~v 187 (546)
T PRK11101 115 EAEAIDPQQALILEPAVNP-----ALIGAVKVPDGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREG-D-TVCGVRV 187 (546)
T ss_pred CcEEECHHHHHHhCCCcCc-----cceEEEEecCcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcC-C-eEEEEEE
Confidence 5899999999999999986 5889999999999999999999999999999999999999998875 4 7899999
Q ss_pred EECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEee--ccCCCcEEEEEecCC
Q 012358 111 RNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVP--KTKDGRVVFMLPWLG 188 (465)
Q Consensus 111 ~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~--~~~dgr~~~~~P~~g 188 (465)
.|..+|+.++|+|+.||||||+|+++|.++++.+ .+|.|.||+|++++.... ..++.+ .+.+++ +++|+.+
T Consensus 188 ~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~--~~i~p~kG~~lv~~~~~~---~~vi~~~~~~~~~~--~~vp~~~ 260 (546)
T PRK11101 188 RDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLR--IRMFPAKGSLLIMDHRIN---NHVINRCRKPADAD--ILVPGDT 260 (546)
T ss_pred EEcCCCcEEEEECCEEEECCChhHHHHHHhcCCC--CceeecceEEEEECCccC---ceeEeccCCCCCCC--EEEecCC
Confidence 8766676678999999999999999999998865 469999999999976422 123332 133444 3679888
Q ss_pred eEEEcccCCCC--CCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeec---
Q 012358 189 RTVAGTTDSDT--VITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--- 263 (465)
Q Consensus 189 ~~liG~td~~~--~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~--- 263 (465)
.+++|+|+++. +++++..++++++++|++.+.+++ |.|...+|+++|+|+||++.++...++..+||+|.|..+
T Consensus 261 ~~liGtT~~~~~~~~~~~~~~t~~~i~~Ll~~~~~l~-P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~ 339 (546)
T PRK11101 261 ISLIGTTSTRIDYDQIDDNRVTAEEVDILLREGEKLA-PVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAER 339 (546)
T ss_pred EEEEeeCCCCccCCCcCCCCCCHHHHHHHHHHHHHhC-CCCCccCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccc
Confidence 89999998764 345667899999999999999999 899999999999999999754323457889999988753
Q ss_pred --CCCeEEEeCCchhchHHHHHHHHHHHHHcCCCCCCCCCCcccccccCCCCCCcchHHHHHHHHhhhhhccCCCcCCCC
Q 012358 264 --FPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLTQNLRLVGGDGWDPSSFTVLAQQYVRMKRTYGGKFVPGV 341 (465)
Q Consensus 264 --~~gli~v~Ggk~Tt~r~~Ae~v~d~~~~~~~l~~~~~~~t~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (465)
.+|+|+++||||||||+|||+++|.+++.++ ...+|.|+..|++|+.++... .....+ .
T Consensus 340 ~g~~gli~i~GGkltt~r~~Ae~v~d~v~~~l~--~~~~~~t~~~~l~g~~~~~~~---~~~~~~--------------~ 400 (546)
T PRK11101 340 DGLDGFITITGGKLMTYRLMAEWATDAVCRKLG--NTRPCTTADTPLPGSQEPAEV---TLRKVI--------------S 400 (546)
T ss_pred cCCCCeEEEECChHHHHHHHHHHHHHHHHHhcC--CCCCCcCCCcccCCccccchh---hHHHhc--------------C
Confidence 2689999999999999999999999998764 345899999999997654321 011111 2
Q ss_pred CCHHHHHHHHHHhCccHHHHHHHHhccCCCCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhHH
Q 012358 342 MDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPR 421 (465)
Q Consensus 342 ~~~~~~~~l~~~yG~~a~~v~~~~~~~~~~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~ 421 (465)
++.+..+++..+||+++.+|++. ++.....+|.|++++++||+||+++|++.++.| |+||||+|| +.|||.+|.++
T Consensus 401 ~~~~~~~~~~~~~g~~a~~~~~~--~~~~~~lic~ce~v~~aEv~~ai~~e~a~~l~d-l~RRtr~gm-g~cqg~~c~~~ 476 (546)
T PRK11101 401 LPAPLRGSAVYRHGDRAPAWLSE--GRLDRSLVCECEAVTAGEVRYAVENLNVNNLLD-LRRRTRVGM-GTCQGELCACR 476 (546)
T ss_pred CCHHHHHHHHHhcCccHHHHHhh--ccCCCceecCCCCccHHHHHHHHHhcCCCCHHH-HHHHHhCCc-CcchhhHHHHH
Confidence 78889999999999999999875 334557899999999999999999999999999 899999999 79999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 012358 422 IIEIMATEHKWDKSRRKQELQKAK 445 (465)
Q Consensus 422 v~~~~a~~lgw~~~~~~~e~~~~~ 445 (465)
++++|+++.+|++++...++++|.
T Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~~~ 500 (546)
T PRK11101 477 AAGLLQRFNVTTPAQSIEQLSTFL 500 (546)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHH
Confidence 999999999999999999988774
No 6
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-58 Score=488.56 Aligned_cols=398 Identities=28% Similarity=0.357 Sum_probs=313.7
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCceeeCHHHHHHhCCCccccccccCceEEEEecCeeEchhHHHHHHHHHHHhCCCEEE
Q 012358 9 EVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVL 88 (465)
Q Consensus 9 ~~~~~~~gl~lyd~l~~~~~~~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~ 88 (465)
..+.++.||++||.++..+.+...+.++..+.. ..|.|++ ++.|++.|+|+++||++++.++++.|.++|++++
T Consensus 100 ~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~-~~~~L~~-----~l~g~~~~~dg~vd~~rl~~~l~~~A~~~Ga~i~ 173 (508)
T PRK12266 100 PAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDP-AGSPLKP-----EITRGFEYSDCWVDDARLVVLNARDAAERGAEIL 173 (508)
T ss_pred chHHHHHHHHHHHhhcCCCCCChhhhhchhhcc-cCCCcch-----hhcEEEEEcCcccCHHHHHHHHHHHHHHcCCEEE
Confidence 345578999999998866566666666544332 2377765 5888999999999999999999999999999999
Q ss_pred cceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhh-hcCCCCCceeecceeEEEeCCCCCCCC
Q 012358 89 NHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQNVQPMICPSSGVHIVLPDYYSPEG 167 (465)
Q Consensus 89 ~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~-~g~~~~~~i~p~kG~~lv~~~~~~~~~ 167 (465)
++++|+++..++ +.++|.+.+..+|+.++|+|+.||||||+|++++.++ +|...+.++.|.||+|++++..... .
T Consensus 174 ~~~~V~~i~~~~---~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~i~p~kG~~lvl~~~~~~-~ 249 (508)
T PRK12266 174 TRTRVVSARREN---GLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPSPYGIRLVKGSHIVVPRLFDH-D 249 (508)
T ss_pred cCcEEEEEEEeC---CEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCCCcceeeeeeEEEEECCcCCC-C
Confidence 999999998764 3467888776667777899999999999999999875 4665455799999999999764332 2
Q ss_pred ceEEeeccCCCcEEEEEec-CCeEEEcccCCCCC-CCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccC
Q 012358 168 MGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTV-ITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMD 245 (465)
Q Consensus 168 ~~~~~~~~~dgr~~~~~P~-~g~~liG~td~~~~-~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d 245 (465)
...+++ ++||+++|++|| +|.+++|+|+.+.. +++++.++++++++|++.++++|+|.++..+|++.|+|+||+++|
T Consensus 250 ~~~~~~-~~dgr~v~~~P~~~g~~liGttd~~~~~~~~~~~~~~~~i~~Ll~~~~~~~p~~l~~~~ii~~waG~RPl~~d 328 (508)
T PRK12266 250 QAYILQ-NPDGRIVFAIPYEDDFTLIGTTDVEYKGDPAKVAISEEEIDYLCKVVNRYFKKQLTPADVVWTYSGVRPLCDD 328 (508)
T ss_pred cEEEEe-CCCCCEEEEEEeCCCeEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCHHHEEEEeeeeEeeCCC
Confidence 333444 578999999999 57999999998754 566788999999999999999994489999999999999999987
Q ss_pred CCCCCCCCcccceeeeec----CCCeEEEeCCchhchHHHHHHHHHHHHHcCCCCCCCCCCcccccccCCCCCCcchHHH
Q 012358 246 PSAKNTESISRDHVVCED----FPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLTQNLRLVGGDGWDPSSFTV 321 (465)
Q Consensus 246 ~~~~~~~~~~r~~~i~~~----~~gli~v~Ggk~Tt~r~~Ae~v~d~~~~~~~l~~~~~~~t~~~~l~g~~~~~~~~~~~ 321 (465)
+ .+.+++++|+|.|..+ .+|+|+++||||||||+|||+++|.+++.++ ..++|.|++.||+|+..+...+..
T Consensus 329 ~-~~~~~~~sr~~~i~~~~~~g~~gli~v~Ggk~Tt~r~mAe~~~~~~~~~l~--~~~~~~t~~~~l~g~~~~~~~~~~- 404 (508)
T PRK12266 329 E-SDSAQAITRDYTLELDDENGGAPLLSVFGGKITTYRKLAEHALEKLAPYLP--QMGPAWTAGAPLPGGDFPGDRFDA- 404 (508)
T ss_pred C-CCCcccCCcceEEEecccCCCCCeEEEEcChHHHHHHHHHHHHHHHHHhcC--CCCCCCcCCcccCCCCCCcccHHH-
Confidence 6 3457889999999875 3689999999999999999999999998765 345899999999998643211111
Q ss_pred HHHHHhhhhhccCCCcCCCCCCHHHHHHHHHHhCccHHHHHHHHhc-cCCCCccccCCCccHHHHHHHHHhcccCChhHH
Q 012358 322 LAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQN-EGLGKRLAHGYPFLEAEVAYCARNEYCESAVDF 400 (465)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~a~~v~~~~~~-~~~~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~ 400 (465)
+..... . ....++.+.++||+++||+++.+|++++++ +++...+ |+++++|||.||+++|||.|++||
T Consensus 405 ~~~~~~---~------~~~~~~~~~~~~l~~~yG~~a~~v~~~~~~~~~~~~~~--~~~~~~aev~~~~~~e~a~~~~D~ 473 (508)
T PRK12266 405 LAAALR---R------RYPWLPEALARRLARAYGTRAERLLGGATSLADLGEHF--GHGLYEAEVDYLVEHEWARTAEDI 473 (508)
T ss_pred HHHHHH---H------hcCCcCHHHHHHHHHhhhhHHHHHHHhcccchhhcccc--CCCccHHHHHHHHHhhCCCCHHHH
Confidence 111111 0 001278999999999999999999998754 3333333 668999999999999999999999
Q ss_pred HHhhcccCcCChHHHhhhhHHHHHHHHHHcCCCHH
Q 012358 401 VARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKS 435 (465)
Q Consensus 401 l~RRt~~~~~~~~~~~~~~~~v~~~~a~~lgw~~~ 435 (465)
|.||||++|+...++ ...+..+++.+++...+
T Consensus 474 l~RRt~l~~~~~~~~---~~~~~~~~~~~~~~~~~ 505 (508)
T PRK12266 474 LWRRTKLGLRLDAEQ---QARLEAWLAARRAAAAA 505 (508)
T ss_pred HHHhcccccccCHHH---HHHHHHHHHHhhccccc
Confidence 999999999755554 34444666666665443
No 7
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-57 Score=479.31 Aligned_cols=380 Identities=30% Similarity=0.366 Sum_probs=308.1
Q ss_pred chHHHHHHHHHHHHHhhCCCCCCCceeeCHHHHHHhCCCccccccccCceEEEEecCeeEchhHHHHHHHHHHHhCCCEE
Q 012358 8 FEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAV 87 (465)
Q Consensus 8 ~~~~~~~~gl~lyd~l~~~~~~~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i 87 (465)
...+..+.|+.+||.++..+.+++.++++..++.+.+| ++. .+.+++.|.|+++||.+++.+++..|.++|+++
T Consensus 99 ~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~-l~~-----~~~~a~~~~dg~vd~~rl~~~l~~~a~~~Ga~i 172 (502)
T PRK13369 99 RPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAP-LKP-----EYTKGFEYSDCWVDDARLVVLNALDAAERGATI 172 (502)
T ss_pred ccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCC-chH-----hcCEEEEEcCeeecHHHHHHHHHHHHHHCCCEE
Confidence 34556789999999998777788899999999988887 554 588899999999999999999999999999999
Q ss_pred EcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhh-hcCCCCCceeecceeEEEeCCCCCCC
Q 012358 88 LNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQNVQPMICPSSGVHIVLPDYYSPE 166 (465)
Q Consensus 88 ~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~-~g~~~~~~i~p~kG~~lv~~~~~~~~ 166 (465)
+++++|+++..++ +.++|.+.+.. |++++|+|+.||||||+|++++.++ .|.+....+.|.||+|++++....+.
T Consensus 173 ~~~~~V~~i~~~~---~~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~v~p~kG~~lv~~~~~~~~ 248 (502)
T PRK13369 173 LTRTRCVSARREG---GLWRVETRDAD-GETRTVRARALVNAAGPWVTDVIHRVAGSNSSRNVRLVKGSHIVVPKFWDGA 248 (502)
T ss_pred ecCcEEEEEEEcC---CEEEEEEEeCC-CCEEEEEecEEEECCCccHHHHHhhccCCCCCcceEEeeEEEEEeCCccCCC
Confidence 9999999998864 34678877754 6667899999999999999999874 46543346999999999997643322
Q ss_pred CceEEeeccCCCcEEEEEecC-CeEEEcccCCCCC-CCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeeccc
Q 012358 167 GMGLIVPKTKDGRVVFMLPWL-GRTVAGTTDSDTV-ITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAM 244 (465)
Q Consensus 167 ~~~~~~~~~~dgr~~~~~P~~-g~~liG~td~~~~-~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~ 244 (465)
...+++ ..|++++|++||. +.+++|+|+.+.+ +++++.++++++++|++.++++|+|.|+..+|++.|+|+||+++
T Consensus 249 -~~~~~~-~~dgr~~~i~P~~~~~~liGtTd~~~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~~~i~~~waGlRPl~~ 326 (502)
T PRK13369 249 -QAYLFQ-NPDKRVIFANPYEGDFTLIGTTDIAYEGDPEDVAADEEEIDYLLDAANRYFKEKLRREDVVHSFSGVRPLFD 326 (502)
T ss_pred -ceEEEe-CCCCeEEEEEEecCCEEEEEecCccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCHhHEEEEeeceEEcCC
Confidence 223444 5688999999996 6889999998754 56778899999999999999999448999999999999999998
Q ss_pred CCCCCCCCCcccceeeeecC----CCeEEEeCCchhchHHHHHHHHHHHHHcCCCCCCCCCCcccccccCCCCCCcchHH
Q 012358 245 DPSAKNTESISRDHVVCEDF----PGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLTQNLRLVGGDGWDPSSFT 320 (465)
Q Consensus 245 d~~~~~~~~~~r~~~i~~~~----~gli~v~Ggk~Tt~r~~Ae~v~d~~~~~~~l~~~~~~~t~~~~l~g~~~~~~~~~~ 320 (465)
|+ .++++.++|+|.|..+. +|+|+++||||||||+|||+++|.+++.++ ..++|.|++.||+|+..+......
T Consensus 327 d~-~~~~~~~sR~~~i~~~~~~g~~gli~i~Ggk~Tt~r~~Ae~v~d~~~~~l~--~~~~~~t~~~~l~g~~~~~~~~~~ 403 (502)
T PRK13369 327 DG-AGNPSAVTRDYVFDLDAETGGAPLLSVFGGKITTFRKLAEHALERLKPFFP--QMGGDWTAGAPLPGGDIANADFDT 403 (502)
T ss_pred CC-CCCcccCCcceEEeeccccCCCCeEEEeCChHhhHHHHHHHHHHHHHHhcC--CCCCCCCCCcccCCcCCCccCHHH
Confidence 75 35577889999998652 679999999999999999999999998765 345899999999998533221111
Q ss_pred HHHHHHhhhhhccCCCcCCCCCCHHHHHHHHHHhCccHHHHHHHHhccCCCCccccC--CCccHHHHHHHHHhcccCChh
Q 012358 321 VLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHG--YPFLEAEVAYCARNEYCESAV 398 (465)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~a~~v~~~~~~~~~~~~v~~~--~~~~~aEi~~ai~~E~a~~l~ 398 (465)
. ...+.. ....++.+.++||+++||+++.+|++++++.. .+|.| +++++|||.|++++|||+|++
T Consensus 404 ~-~~~~~~---------~~~~~~~~~~~~l~~~yG~~a~~v~~~~~~~~---~~~~~~~~~~~~aev~~~~~~e~a~~~~ 470 (502)
T PRK13369 404 F-ADDLRD---------RYPWLPRPLAHRYARLYGTRAKDVLGGARSLE---DLGRHFGGGLTEAEVRYLVAREWARTAE 470 (502)
T ss_pred H-HHHHHh---------hcCCCCHHHHHHHHHhhhhHHHHHHHhcccch---hhhcccCCCccHHHHHHHHHhhcCCCHH
Confidence 1 111110 01127999999999999999999999875421 24455 589999999999999999999
Q ss_pred HHHHhhcccCcCChHHH
Q 012358 399 DFVARRCRLAFLDTDAA 415 (465)
Q Consensus 399 D~l~RRt~~~~~~~~~~ 415 (465)
|+|+||||++|+...++
T Consensus 471 D~l~RRt~l~~~~~~~~ 487 (502)
T PRK13369 471 DILWRRTKLGLHLSAAE 487 (502)
T ss_pred HHHHHhhhcccccCHHH
Confidence 99999999999644443
No 8
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.91 E-value=6.6e-23 Score=210.41 Aligned_cols=235 Identities=18% Similarity=0.180 Sum_probs=177.1
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 109 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~ 109 (465)
++++++++|+++++|.+.. .++++++ +|++||..++.+|.+.+.++|++++.+++|+++...++ . +.|.
T Consensus 116 ~~~~l~~~el~~~~P~l~~-------~~al~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~--~-~~V~ 185 (393)
T PRK11728 116 EVERLDAEELREREPNIRG-------LGAIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHAN--G-VVVR 185 (393)
T ss_pred cEEEeCHHHHHHhCCCccc-------cceEEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCC--e-EEEE
Confidence 4889999999999999852 3666666 78899999999999999999999999999999987653 3 3455
Q ss_pred EEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccCC---CcEEEEEec
Q 012358 110 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKD---GRVVFMLPW 186 (465)
Q Consensus 110 ~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~d---gr~~~~~P~ 186 (465)
+. +| ++.|+.||+|+|+|++.+++++|.+.+.++.|.||+++++.....+....++++.+.. ...++++|.
T Consensus 186 ~~---~g---~i~ad~vV~A~G~~s~~l~~~~g~~~~~~v~p~rGq~~~~~~~~~~~~~~~v~~~p~~~~~~~g~~~~p~ 259 (393)
T PRK11728 186 TT---QG---EYEARTLINCAGLMSDRLAKMAGLEPDFRIVPFRGEYYRLAPEKNQLVNHLIYPVPDPAFPFLGVHLTRM 259 (393)
T ss_pred EC---CC---EEEeCEEEECCCcchHHHHHHhCCCCCCceEEeeeEEEEeccccccccCCceecCCCCCCCcceEEeecC
Confidence 42 23 6999999999999999999999876556799999999998643222223345543311 234788998
Q ss_pred C-CeEEEcccCCCCC--CCCCCC-C---------------------CHHHHHHH---------HHHHhhhccccCCcCCe
Q 012358 187 L-GRTVAGTTDSDTV--ITLLPE-P---------------------HEDEIQFI---------LDAISDYLNVKVRRTDV 232 (465)
Q Consensus 187 ~-g~~liG~td~~~~--~~~~~~-~---------------------~~~~i~~l---------l~~~~~~~~p~L~~~~i 232 (465)
. |++++|++..+.. ...+.. . +.+.++.+ ++.+.+++ |.|...+|
T Consensus 260 ~~G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-P~l~~~~i 338 (393)
T PRK11728 260 IDGSVTVGPNAVLAFKREGYRKRDFSLRDLLEILTYPGFWKLAQKHWRSGLGEMKNSLSKSGYLRLVQKYC-PSLTLSDL 338 (393)
T ss_pred CCCCEEECCCcceehhhcCccccCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhC-CCCCHHHc
Confidence 5 7899997543321 111111 1 44455555 58899999 99999999
Q ss_pred eEeeeeeee--cccCCCCCCCCCcccceeeeecCCCeEEEeCCc---hhchHHHHHHHHHHH
Q 012358 233 LSAWSGIRP--LAMDPSAKNTESISRDHVVCEDFPGLVTITGGK---WTTYRSMAEDAVNAA 289 (465)
Q Consensus 233 ~~~waG~RP--~~~d~~~~~~~~~~r~~~i~~~~~gli~v~Ggk---~Tt~r~~Ae~v~d~~ 289 (465)
...|+|+|| .++|+ ....||.|. ..+++|++.|+. +|++.+||++|++.+
T Consensus 339 ~~~~~G~Rp~~~~~d~------~~~~d~~i~-~~~~~~~~~~~~spg~t~s~~ia~~v~~~~ 393 (393)
T PRK11728 339 QPYPAGVRAQAVSRDG------KLVDDFLFV-ETPRSLHVCNAPSPAATSSLPIGEHIVSKV 393 (393)
T ss_pred ccCCCceeeeeeCCCC------CccCceEEe-cCCCEEEEcCCCCchHHccHHHHHHHHhhC
Confidence 999999999 65554 224578665 348899999986 999999999999863
No 9
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.88 E-value=3.1e-21 Score=195.37 Aligned_cols=256 Identities=22% Similarity=0.244 Sum_probs=199.4
Q ss_pred HHHHHhhCCCCCCCceeeCHHHHHHhCCCccccccccCceEEEEecC-eeEchhHHHHHHHHHHHhCCCEEEcceeEEEE
Q 012358 18 KMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD-GQMNDSRLNVGLALTAALAGAAVLNHAEVISL 96 (465)
Q Consensus 18 ~lyd~l~~~~~~~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~d-g~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i 96 (465)
++|..+. .+++...+++|++|+++++|+++. +..|+++.++ +.|||..++.+|++.|.++|++++.+++|++|
T Consensus 106 ~l~~~~~-~ngv~~~~~ld~~~i~~~eP~l~~-----~~~aal~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i 179 (429)
T COG0579 106 KLYERGK-ANGVFDLEILDKEEIKELEPLLNE-----GAVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGI 179 (429)
T ss_pred HHHHHHh-hCCCcceeecCHHHHHhhCccccc-----cceeeEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEE
Confidence 5777663 566777999999999999999986 4678888876 55899999999999999999999999999999
Q ss_pred EEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccC
Q 012358 97 IKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTK 176 (465)
Q Consensus 97 ~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~ 176 (465)
++.++| ++-+.+. +|++. ++|+.||||||..|+.|+++.|.+..+.+.|.+|++++++........+++++.+.
T Consensus 180 ~~~~dg--~~~~~~~---~g~~~-~~ak~Vin~AGl~Ad~la~~~g~~~~~~~~P~~G~y~~~~~~~~~~~~~~Iy~~p~ 253 (429)
T COG0579 180 EKQSDG--VFVLNTS---NGEET-LEAKFVINAAGLYADPLAQMAGIPEDFKIFPVRGEYLVLDNEVKALLRHKIYPVPN 253 (429)
T ss_pred EEeCCc--eEEEEec---CCcEE-EEeeEEEECCchhHHHHHHHhCCCcccccCccceEEEEEcccccccccceeecCCC
Confidence 998753 4444443 56544 99999999999999999999998765789999999999987544444556776543
Q ss_pred C---CcEEEEEec-CCeEEEcccCCCCC--CCCCCCCCHHHHHHHHHHHhhhccccCC-cCCeeEeeeeeeecccCCCCC
Q 012358 177 D---GRVVFMLPW-LGRTVAGTTDSDTV--ITLLPEPHEDEIQFILDAISDYLNVKVR-RTDVLSAWSGIRPLAMDPSAK 249 (465)
Q Consensus 177 d---gr~~~~~P~-~g~~liG~td~~~~--~~~~~~~~~~~i~~ll~~~~~~~~p~L~-~~~i~~~waG~RP~~~d~~~~ 249 (465)
- +..+++.|. .|.+++||+....+ ...+...+.+..+.+......++ |.+. .......|+|.||....+ .
T Consensus 254 ~~~p~~gV~~~~~idG~~l~GP~A~~~~~~~k~~~~~~~d~~d~v~~~~~~~~-~~~~~~~~~~~~y~~~r~~~~~~-~- 330 (429)
T COG0579 254 PGLPGLGVHHTPTIDGSLLFGPNALDSPKFLKGDRGVDFDLLDSVRKANSRGM-PDLGIKNNVLANYAGIRPILKEP-R- 330 (429)
T ss_pred CCCCCCcceeecccCCeEEECCCcccchhhhccccccccchhhhHHHhhhhhc-ccccccccchhhhheeccccccc-c-
Confidence 2 345777887 47899999987653 22235677778888888888898 7887 667889999999987332 1
Q ss_pred CCCCcccceeeee--cCCCeEEEeCCc---hhchHHHHHHHHHHHHH
Q 012358 250 NTESISRDHVVCE--DFPGLVTITGGK---WTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 250 ~~~~~~r~~~i~~--~~~gli~v~Ggk---~Tt~r~~Ae~v~d~~~~ 291 (465)
.-..++.|-. ...++++++|.+ +|...++|+.++..+..
T Consensus 331 ---~~~~~~~ip~~~~~~~~~~~aGiRsq~lt~~~a~~~~~~~~~t~ 374 (429)
T COG0579 331 ---LPALDFIIPEAKDEDWFINVAGIRSQGLTADPAIAGGVLELLTE 374 (429)
T ss_pred ---ccccceecccccCCCCceeeeeEEccccccChhHhhhHhhhccc
Confidence 1123555542 236799999976 89999999999988765
No 10
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.88 E-value=2.1e-21 Score=194.56 Aligned_cols=226 Identities=23% Similarity=0.289 Sum_probs=170.3
Q ss_pred CCceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEE
Q 012358 30 HLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGA 108 (465)
Q Consensus 30 ~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV 108 (465)
.++++++++|+++++|.++. .+.++++++ +|++||.+++.++++.+.++|++++++++|+++..++ + ++++|
T Consensus 101 ~~~~~l~~~e~~~~~p~l~~-----~~~~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~-~-~~~~v 173 (337)
T TIGR02352 101 MEVEWLSGRALRRLEPYLSG-----GIRGAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG-E-KVTAI 173 (337)
T ss_pred CceEEcCHHHHHHhCCCCCc-----ccceEEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC-C-EEEEE
Confidence 36899999999999999976 577888887 7899999999999999999999999999999998865 3 67777
Q ss_pred EEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCC-CCceEEeeccCCCcEEEEEecC
Q 012358 109 RIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSP-EGMGLIVPKTKDGRVVFMLPWL 187 (465)
Q Consensus 109 ~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~-~~~~~~~~~~~dgr~~~~~P~~ 187 (465)
.+. .| +++|+.||||+|+|+..+.. .++.|.+|++++++....+ ...++... ..+. ..|++|..
T Consensus 174 ~~~---~g---~~~a~~vV~a~G~~~~~l~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~-~~y~~p~~ 238 (337)
T TIGR02352 174 VTP---SG---DVQADQVVLAAGAWAGELLP-------LPLRPVRGQPLRLEAPAVPLLNRPLRAV-VYGR-RVYIVPRR 238 (337)
T ss_pred EcC---CC---EEECCEEEEcCChhhhhccc-------CCccccCceEEEeeccccccCCcccceE-EEcC-CEEEEEcC
Confidence 653 23 69999999999999999864 2478899999988543111 11111000 1122 36788975
Q ss_pred -CeEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeec--C
Q 012358 188 -GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--F 264 (465)
Q Consensus 188 -g~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~--~ 264 (465)
|..++|+++... ..+..++.+.++.+++.+.++| |.+...++...|+|+||.++|..+ .|-.. .
T Consensus 239 ~g~~~iG~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~~~~g~r~~t~D~~p----------iig~~~~~ 305 (337)
T TIGR02352 239 DGRLVVGATMEES--GFDTTPTLGGIKELLRDAYTIL-PALKEARLLETWAGLRPGTPDNLP----------YIGEHPED 305 (337)
T ss_pred CCeEEEEEecccc--CccCCCCHHHHHHHHHHHHHhC-CCcccCcHHHheecCCCCCCCCCC----------EeCccCCC
Confidence 568899877543 2344577888999999999999 899989999999999999887532 22111 2
Q ss_pred CCeEEEeC--C-chhchHHHHHHHHHHHH
Q 012358 265 PGLVTITG--G-KWTTYRSMAEDAVNAAI 290 (465)
Q Consensus 265 ~gli~v~G--g-k~Tt~r~~Ae~v~d~~~ 290 (465)
+|++-++| | .+|.++.+|+.+++.+.
T Consensus 306 ~~~~~~~g~~g~G~~~~p~~g~~la~~i~ 334 (337)
T TIGR02352 306 RRLLIATGHYRNGILLAPATAEVIADLIL 334 (337)
T ss_pred CCEEEEcccccCceehhhHHHHHHHHHHh
Confidence 35444444 3 37888999999988875
No 11
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.86 E-value=1.4e-20 Score=189.16 Aligned_cols=231 Identities=28% Similarity=0.402 Sum_probs=173.0
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEecC-eeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD-GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 109 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~d-g~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~ 109 (465)
++++++++++.+.+|.+.+ .+.+++++++ +++||.+++.+|++.+.++|++|+++++|++|..+++ ++.+|+
T Consensus 112 ~~~~~~~~~~~~~~p~~~~-----~~~~~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~--~v~gv~ 184 (358)
T PF01266_consen 112 PYELLSPEELRELFPFLNP-----RIEGGVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGG--RVTGVR 184 (358)
T ss_dssp TEEEEEHHHHHHHSTTSST-----TTEEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETT--EEEEEE
T ss_pred cccccchhhhhhhhccccc-----chhhhhcccccccccccchhhhhHHHHHHhhhhccccccccchhhccc--cccccc
Confidence 7899999999999999985 5777888775 5599999999999999999999999999999998874 777788
Q ss_pred EEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeecc--CCCcEEEEEecC
Q 012358 110 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKT--KDGRVVFMLPWL 187 (465)
Q Consensus 110 ~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~--~dgr~~~~~P~~ 187 (465)
+.+ | +|+||.||||+|+|+..+.++.+.+. ++.+.+|+++.++.........+++... .+...+|+.|+.
T Consensus 185 ~~~---g---~i~ad~vV~a~G~~s~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 256 (358)
T PF01266_consen 185 TSD---G---EIRADRVVLAAGAWSPQLLPLLGLDL--PLRPVRGQVLVLEPPESPLAPAILFPPVIFGPSDGVYIRPRP 256 (358)
T ss_dssp ETT---E---EEEECEEEE--GGGHHHHHHTTTTSS--TEEEEEEEEEEEEGCCSGSSSEEEEEEECESSCTEEEEEEET
T ss_pred ccc---c---ccccceeEecccccceeeeecccccc--cccccceEEEEEccCCcccccccccccccccccccceecccc
Confidence 742 3 59999999999999999999988754 5899999999986543333333332211 234568899999
Q ss_pred CeEEEcccCCCCC-CCCC-------CCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCccccee
Q 012358 188 GRTVAGTTDSDTV-ITLL-------PEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHV 259 (465)
Q Consensus 188 g~~liG~td~~~~-~~~~-------~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~ 259 (465)
+.+++|+++..+. .+.. ...+.+ ++.+++.+.+++ |.+...++.+.|+|+||.++|+. ..
T Consensus 257 g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~-p~l~~~~v~~~~~g~r~~t~d~~----------p~ 324 (358)
T PF01266_consen 257 GGVLIGTADGNYDPGPSPEDSSGEDPDVDEE-IDELLERLARLL-PGLGDAEVVRSWAGIRPFTPDGR----------PI 324 (358)
T ss_dssp TEEEEEESECEEEESSSHHHHSHHHHHHHHH-HHHHHHHHHHHS-GGGGGSEEEEEEEEEEEEETTSE----------CE
T ss_pred cccccccccccccccccccccccccccccHH-HHHhHHHHHHHH-HHhhhccccccccceeeeccCCC----------ee
Confidence 9999996653322 1111 011223 678999999999 89999999999999999988752 22
Q ss_pred eeec--CCCeEEEeCCc---hhchHHHHHHHHHH
Q 012358 260 VCED--FPGLVTITGGK---WTTYRSMAEDAVNA 288 (465)
Q Consensus 260 i~~~--~~gli~v~Ggk---~Tt~r~~Ae~v~d~ 288 (465)
|... .+|++.+.|.. +|.+..+|+.++|+
T Consensus 325 ig~~~~~~~l~~~~g~~~~G~~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 325 IGELPGSPNLYLAGGHGGHGFTLAPGLAELLADL 358 (358)
T ss_dssp EEEESSEEEEEEEECETTCHHHHHHHHHHHHHHH
T ss_pred eeecCCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 3221 24666666543 89999999988874
No 12
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.84 E-value=2.1e-19 Score=185.48 Aligned_cols=237 Identities=18% Similarity=0.170 Sum_probs=165.2
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 109 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~ 109 (465)
++++++++|+++++|.++. .+.|+++++ |+++||.+++.+|++.|.++|++++++++|+++..+++ . +.+.
T Consensus 162 ~~~~l~~~e~~~~~P~l~~-----~~~ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~--~-~~v~ 233 (410)
T PRK12409 162 ERRAVTPEEMRAIEPTLTG-----EYYGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGG--G-VVLT 233 (410)
T ss_pred CeEEcCHHHHHHhCCCCcc-----ccceEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC--E-EEEE
Confidence 5789999999999999975 467888776 68899999999999999999999999999999987553 3 3354
Q ss_pred EEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCC--CCCCceE-EeeccCCCcEEEEEec
Q 012358 110 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYY--SPEGMGL-IVPKTKDGRVVFMLPW 186 (465)
Q Consensus 110 ~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~--~~~~~~~-~~~~~~dgr~~~~~P~ 186 (465)
+.+...++..+++|+.||||+|+|+..+.++++.. .++.|.+|++++++... .+...+. .+. ..+..+.+..+.
T Consensus 234 ~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~--~~i~p~~g~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~ 310 (410)
T PRK12409 234 VQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDR--VNVYPVKGYSITVNLDDEASRAAAPWVSLL-DDSAKIVTSRLG 310 (410)
T ss_pred EEcCCCCccceEecCEEEECCCcChHHHHHHhCCC--CccccCCceEEEeecCCccccccCCceeee-ecCCcEEEEecC
Confidence 44311100236999999999999999999888765 35889999988774221 1111111 111 112222221222
Q ss_pred CCeEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeecCCC
Q 012358 187 LGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPG 266 (465)
Q Consensus 187 ~g~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~~~g 266 (465)
.+..++|++.... ..+..++.+.++.+++.+.++| |.|....+. .|+|+||.++|+.+ ..+.. ..+|
T Consensus 311 ~~~~~igg~~~~~--~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~-~w~G~r~~t~D~~P-iiG~~--------~~~~ 377 (410)
T PRK12409 311 ADRFRVAGTAEFN--GYNRDIRADRIRPLVDWVRRNF-PDVSTRRVV-PWAGLRPMMPNMMP-RVGRG--------RRPG 377 (410)
T ss_pred CCcEEEEEEEEec--CCCCCCCHHHHHHHHHHHHHhC-CCCCccccc-eecccCCCCCCCCC-eeCCC--------CCCC
Confidence 3566677765432 1233466778999999999999 899877765 79999999998632 11110 1245
Q ss_pred eEEEeC--C-chhchHHHHHHHHHHHHH
Q 012358 267 LVTITG--G-KWTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 267 li~v~G--g-k~Tt~r~~Ae~v~d~~~~ 291 (465)
++..+| | .+|.++.+|+.+.+.+..
T Consensus 378 l~~~~G~~~~G~~~ap~~g~~lA~~i~~ 405 (410)
T PRK12409 378 VFYNTGHGHLGWTLSAATADLVAQVVAQ 405 (410)
T ss_pred EEEecCCcccchhhcccHHHHHHHHHcC
Confidence 555444 3 489999999999998854
No 13
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.83 E-value=1.3e-18 Score=179.44 Aligned_cols=236 Identities=17% Similarity=0.226 Sum_probs=171.5
Q ss_pred CceeeCHHHHHHhCCCccccccc-cCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKD-RSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGA 108 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~-~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV 108 (465)
++++|+++|+++++|.++.+.+. ..+.|+++.+ +|++||..++.+|++.|.++|++++++++|+++...+++ ++++|
T Consensus 142 ~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~~~v 220 (407)
T TIGR01373 142 DAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGG-RVIGV 220 (407)
T ss_pred CeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCC-cEEEE
Confidence 68999999999999999752000 0246777776 678999999999999999999999999999999765333 66677
Q ss_pred EEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccCCCcEEEEEecC-
Q 012358 109 RIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL- 187 (465)
Q Consensus 109 ~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dgr~~~~~P~~- 187 (465)
++. +| ++.|+.||+|||.|+..+.++.+.+. ++.+.+++.+++++. .+....+++. .++ .+|+.|..
T Consensus 221 ~t~---~g---~i~a~~vVvaagg~~~~l~~~~g~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~-~~y~~p~~~ 288 (407)
T TIGR01373 221 ETT---RG---FIGAKKVGVAVAGHSSVVAAMAGFRL--PIESHPLQALVSEPL-KPIIDTVVMS--NAV-HFYVSQSDK 288 (407)
T ss_pred EeC---Cc---eEECCEEEECCChhhHHHHHHcCCCC--CcCcccceEEEecCC-CCCcCCeEEe--CCC-ceEEEEcCC
Confidence 654 24 69999999999999999998888764 467778876666432 1111223332 233 36788885
Q ss_pred CeEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeec-CCC
Q 012358 188 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-FPG 266 (465)
Q Consensus 188 g~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~-~~g 266 (465)
|..++|.+....+ ..+...+.+.++.+++.+.++| |.+...++.+.|+|+||.++|+.+ .|-.. .+|
T Consensus 289 g~~~ig~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~~w~G~~~~t~D~~P----------iIg~~~~~g 356 (407)
T TIGR01373 289 GELVIGGGIDGYN-SYAQRGNLPTLEHVLAAILEMF-PILSRVRMLRSWGGIVDVTPDGSP----------IIGKTPLPN 356 (407)
T ss_pred ceEEEecCCCCCC-ccCcCCCHHHHHHHHHHHHHhC-CCcCCCCeEEEeccccccCCCCCc----------eeCCCCCCC
Confidence 6688886643221 1222345678899999999999 899888999999999999988632 11111 246
Q ss_pred eEEEeC--C-chhchHHHHHHHHHHHHH
Q 012358 267 LVTITG--G-KWTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 267 li~v~G--g-k~Tt~r~~Ae~v~d~~~~ 291 (465)
++.++| | .+|.++.+|+.+.+.+..
T Consensus 357 l~~a~G~~g~G~~~ap~~G~~la~li~~ 384 (407)
T TIGR01373 357 LYLNCGWGTGGFKATPASGTVFAHTLAR 384 (407)
T ss_pred eEEEeccCCcchhhchHHHHHHHHHHhC
Confidence 666666 2 388899999999998753
No 14
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.83 E-value=1.2e-18 Score=182.54 Aligned_cols=256 Identities=14% Similarity=0.076 Sum_probs=172.8
Q ss_pred Ccee-eCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEE
Q 012358 31 LSRY-YSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGA 108 (465)
Q Consensus 31 ~~~~-l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV 108 (465)
..++ ++++|+++++|.+...+..+...||++++ ++++||.+++.+|++.+.++|++|+.+++|++|..++++ .+.|
T Consensus 137 ~~~~~l~~~el~~~eP~l~~~r~~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~--~v~v 214 (483)
T TIGR01320 137 GMEFSEDPATFAEWLPLMAAGRDFSEPVAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDG--SWTV 214 (483)
T ss_pred CceEeCCHHHHHHhCCCcccCCCCCCceEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC--eEEE
Confidence 4665 79999999999997421112466788877 578999999999999999999999999999999875432 3445
Q ss_pred EEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCC--CCceeecceeEEEeCCC-CCCCCceEEeeccCCCcEEEEEe
Q 012358 109 RIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDY-YSPEGMGLIVPKTKDGRVVFMLP 185 (465)
Q Consensus 109 ~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~--~~~i~p~kG~~lv~~~~-~~~~~~~~~~~~~~dgr~~~~~P 185 (465)
.+.+..+|+..+++|+.||||||.|++.|++++|... .+.+.|.+|+++.++.+ ........+++.+.-+-..+.+|
T Consensus 215 ~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~~~~~~i~P~~Gq~l~l~~~~~~~~~~~~IY~v~~p~~p~~~Vp 294 (483)
T TIGR01320 215 TVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPEVKGFAGFPVSGLFLRCGNPELTEQHRAKVYGQASVGAPPMSVP 294 (483)
T ss_pred EEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCcCCCCceeeeeEEEEEeCCHHHHhhcCeEEEecCCCCCCCcEEe
Confidence 5544334544579999999999999999999998752 35789999999998643 22223344565442222245565
Q ss_pred cC------Ce--EEEcccCC--CC---CCC--C-CCCCCHHH--------------H-----------HHHHHHHhhhcc
Q 012358 186 WL------GR--TVAGTTDS--DT---VIT--L-LPEPHEDE--------------I-----------QFILDAISDYLN 224 (465)
Q Consensus 186 ~~------g~--~liG~td~--~~---~~~--~-~~~~~~~~--------------i-----------~~ll~~~~~~~~ 224 (465)
.. |. +++||+.. +. +.. + ....+..+ . ...++.+++++
T Consensus 295 h~Dtr~i~G~~~~~~GP~A~~~~~~~reg~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~- 373 (483)
T TIGR01320 295 HLDTRVVDGKKWLLFGPYAGWSPKFLKHGSILDLPLSIRPDNLLSMLGVGLTEMDLTKYLIGQLRKSEEERVSALREFY- 373 (483)
T ss_pred cCCCccccCCEEEEECcCCCcchHhhcCCchhHHhhcCCHhhHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHhC-
Confidence 43 33 34999987 21 000 0 00111000 0 12244567888
Q ss_pred ccCCcCCeeEeeeeeeecccCCCCCCC--CCcc-cceeeeecCCCeEEEeCC---chhchHHHHHHHHHHHHH
Q 012358 225 VKVRRTDVLSAWSGIRPLAMDPSAKNT--ESIS-RDHVVCEDFPGLVTITGG---KWTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 225 p~L~~~~i~~~waG~RP~~~d~~~~~~--~~~~-r~~~i~~~~~gli~v~Gg---k~Tt~r~~Ae~v~d~~~~ 291 (465)
|.++.+|+...++|+||..-+.+. .- +.+. .++.|. ..++.+++.-+ ..||+..+|++|++....
T Consensus 374 p~~~~~d~~~~~~GiR~Q~i~~~~-~~~~g~l~~g~~~i~-~~~~~~~~l~~~SPgaTss~~i~~~v~~~~~~ 444 (483)
T TIGR01320 374 PEAIDSDWELIVAGQRVQVIKKDP-EKGGGVLEFGTTLIA-DADGSIAGLLGASPGASTAVSIMLDLLERCFP 444 (483)
T ss_pred CCCCHHHcEEccCceEEEEEecCC-CCCcCEEecCCeEEE-CCCCeEEEecCCCchHHhhHHHHHHHHHHHhH
Confidence 899999999999999998765321 11 2222 244554 45566665443 489999999999998754
No 15
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.83 E-value=7e-19 Score=181.81 Aligned_cols=235 Identities=17% Similarity=0.163 Sum_probs=168.5
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 109 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~ 109 (465)
++++|+++|+++++|.++.. .+.+.|+++++ ++++||..++.+|++.+.++|++|+++++|+++..+++ ++++|+
T Consensus 163 ~~~~l~~~e~~~~~P~l~~~--~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~--~~~~v~ 238 (416)
T PRK00711 163 PYELLDRDELAAVEPALAGV--RHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGG--RITGVQ 238 (416)
T ss_pred CceecCHHHHHHhCCCccCC--CccceeEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC--EEEEEE
Confidence 57899999999999998620 01577888877 68899999999999999999999999999999987653 566665
Q ss_pred EEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccCCCcEEEEEecCCe
Q 012358 110 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGR 189 (465)
Q Consensus 110 ~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dgr~~~~~P~~g~ 189 (465)
+. .+ ++.|+.||||+|+|+..+.+.+|.+. ++.|.+|+.+.++.... ...+.... ......+++.+..+.
T Consensus 239 t~---~~---~~~a~~VV~a~G~~~~~l~~~~g~~~--pi~p~rg~~~~~~~~~~-~~~p~~~~-~~~~~~~~~~~~~~~ 308 (416)
T PRK00711 239 TG---GG---VITADAYVVALGSYSTALLKPLGVDI--PVYPLKGYSLTVPITDE-DRAPVSTV-LDETYKIAITRFDDR 308 (416)
T ss_pred eC---Cc---EEeCCEEEECCCcchHHHHHHhCCCc--ccCCccceEEEEecCCC-CCCCceeE-EecccCEEEeecCCc
Confidence 43 23 69999999999999999988887654 58899998877643211 11111110 111111223333467
Q ss_pred EEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeecCCCeEE
Q 012358 190 TVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVT 269 (465)
Q Consensus 190 ~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~~~gli~ 269 (465)
.++|++..... .+..++.+..+.+.+.+.++| |.+....+.+.|+|+||.++|+.+ -.+.. ..+|++.
T Consensus 309 ~~iG~~~~~~~--~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~~w~G~r~~t~D~~P-iIG~~--------~~~gl~~ 376 (416)
T PRK00711 309 IRVGGMAEIVG--FDLRLDPARRETLEMVVRDLF-PGGGDLSQATFWTGLRPMTPDGTP-IVGAT--------RYKNLWL 376 (416)
T ss_pred eEEEEEEEecC--CCCCCCHHHHHHHHHHHHHHC-CCcccccccceeeccCCCCCCCCC-EeCCc--------CCCCEEE
Confidence 78887653321 233466778888999999999 899888899999999999988632 11111 1256666
Q ss_pred EeC--C-chhchHHHHHHHHHHHHH
Q 012358 270 ITG--G-KWTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 270 v~G--g-k~Tt~r~~Ae~v~d~~~~ 291 (465)
.+| | .+|.++.+|+.+++.+..
T Consensus 377 a~G~~g~G~~~ap~~g~~la~li~g 401 (416)
T PRK00711 377 NTGHGTLGWTMACGSGQLLADLISG 401 (416)
T ss_pred ecCCchhhhhhhhhHHHHHHHHHcC
Confidence 666 2 389999999999998853
No 16
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.82 E-value=3.3e-18 Score=174.33 Aligned_cols=231 Identities=16% Similarity=0.103 Sum_probs=167.0
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 109 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~ 109 (465)
+.++++++++++++|.++.+ ...++++.+ +|++||.+++.++++.+.+.|++++.+++|+++..+++ . +.|.
T Consensus 113 ~~~~l~~~~~~~~~P~l~~~----~~~~a~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~-~~v~ 185 (376)
T PRK11259 113 PHEVLDAAEIRRRFPQFRLP----DGYIALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGD--G-VTVT 185 (376)
T ss_pred CcEEECHHHHHHhCCCCcCC----CCceEEEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCC--e-EEEE
Confidence 57899999999999999743 445666665 78999999999999999999999999999999988653 2 3454
Q ss_pred EEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCC---CCCceEEeeccCCCcEEEEEec
Q 012358 110 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYS---PEGMGLIVPKTKDGRVVFMLPW 186 (465)
Q Consensus 110 ~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~---~~~~~~~~~~~~dgr~~~~~P~ 186 (465)
+. +| ++.|+.||+|+|+|+..+..++. .++.|.+++++.+..... ....+++.....+++.+|++|.
T Consensus 186 ~~---~g---~~~a~~vV~A~G~~~~~l~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~ 255 (376)
T PRK11259 186 TA---DG---TYEAKKLVVSAGAWVKDLLPPLE----LPLTPVRQVLAWFQADGRYSEPNRFPAFIWEVPDGDQYYGFPA 255 (376)
T ss_pred eC---CC---EEEeeEEEEecCcchhhhccccc----CCceEEEEEEEEEecCCccCCccCCCEEEEecCCCceeEeccC
Confidence 42 24 69999999999999999877632 347889999888753211 1122333322345566788898
Q ss_pred C-Ce-EEEcccCCCC-----CCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCccccee
Q 012358 187 L-GR-TVAGTTDSDT-----VITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHV 259 (465)
Q Consensus 187 ~-g~-~liG~td~~~-----~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~ 259 (465)
. +. +++|++.... ++.+.....++.++.+++.+.++| |.+.. +.+.|+|+||.++|+. ..
T Consensus 256 ~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-P~~~~--~~~~~~g~~~~t~D~~----------P~ 322 (376)
T PRK11259 256 ENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAELRPFLRNYL-PGVGP--CLRGAACTYTNTPDEH----------FI 322 (376)
T ss_pred CCCCceEEEECCCCCCCCChhhccCCCCcHHHHHHHHHHHHHHC-CCCCc--cccceEEecccCCCCC----------ce
Confidence 4 55 7888766411 111122223567899999999999 77765 8899999999988863 22
Q ss_pred eeec--CCCeEEEeCC---chhchHHHHHHHHHHHHH
Q 012358 260 VCED--FPGLVTITGG---KWTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 260 i~~~--~~gli~v~Gg---k~Tt~r~~Ae~v~d~~~~ 291 (465)
|-.. .+|++.++|- .+|.++.+|+.+.+.+..
T Consensus 323 ig~~~~~~gl~~~~G~~g~G~~~ap~~g~~la~li~~ 359 (376)
T PRK11259 323 IDTLPGHPNVLVASGCSGHGFKFASVLGEILADLAQD 359 (376)
T ss_pred eecCCCCCCEEEEecccchhhhccHHHHHHHHHHHhc
Confidence 3221 2577777663 389999999999999864
No 17
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.82 E-value=3.1e-19 Score=182.51 Aligned_cols=231 Identities=19% Similarity=0.174 Sum_probs=165.5
Q ss_pred ceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEE
Q 012358 32 SRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARI 110 (465)
Q Consensus 32 ~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~ 110 (465)
.++++++|+.+.+|.. ...++++++ ||++||.+++.+|++.+.+ |++++++++|++|..+++ + +.|++
T Consensus 103 ~~~l~~~e~~~~~~~~-------~~~gal~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~--~-~~v~t 171 (381)
T TIGR03197 103 ARWVDAEQASQLAGIP-------LPYGGLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGE--G-WQLLD 171 (381)
T ss_pred heeCCHHHHHHhcCCC-------CCCCceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCC--e-EEEEe
Confidence 4578888988887642 345677776 7889999999999999998 999999999999987653 3 55654
Q ss_pred EECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccCCCcEEEEEecC-Ce
Q 012358 111 RNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GR 189 (465)
Q Consensus 111 ~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dgr~~~~~P~~-g~ 189 (465)
. +|. .+.|+.||+|+|+|+..+.++. . .++.|.||+++.++........+..+. .+ .|++|.. |.
T Consensus 172 ~---~g~--~~~a~~vV~a~G~~~~~l~~~~--~--~pi~p~rg~~~~~~~~~~~~~~~~~~~--~~---~y~~p~~~g~ 237 (381)
T TIGR03197 172 A---NGE--VIAASVVVLANGAQAGQLAQTA--H--LPLRPVRGQVSHLPATEALSALKTVLC--YD---GYLTPANNGE 237 (381)
T ss_pred C---CCC--EEEcCEEEEcCCcccccccccc--c--CCccccccceeeccCCCcccccCceEe--CC---ceecccCCCc
Confidence 3 353 4899999999999999987763 2 358999999988854311011111221 12 3778885 56
Q ss_pred EEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCC-----cCCeeEeeeeeeecccCCCCCCCCC------cccce
Q 012358 190 TVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVR-----RTDVLSAWSGIRPLAMDPSAKNTES------ISRDH 258 (465)
Q Consensus 190 ~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~-----~~~i~~~waG~RP~~~d~~~~~~~~------~~r~~ 258 (465)
+++|.|..... .+..++.+.++.+++.+.++| |.+. +.++.+.|+|+||.++|..+ -.+. ++++|
T Consensus 238 ~~iG~t~~~~~--~~~~~~~~~~~~~~~~~~~~~-P~l~~~~~~~~~~~~~~~G~r~~t~D~~P-iig~~~~~~~~~~~~ 313 (381)
T TIGR03197 238 HCIGASYDRND--DDLALREADHAENLERLAECL-PALAWASEVDISALQGRVGVRCASPDHLP-LVGAVPDFEAIKEAY 313 (381)
T ss_pred eEeecccCCCC--CCCCcCHHHHHHHHHHHHHhC-cccchhhccCccccCceEEEeccCCCcCc-cCCCCCCHHHHHHHH
Confidence 78897754432 234567788899999999999 8886 67899999999999998743 1111 12223
Q ss_pred eeeec------------CCCeEEEeCC---chhchHHHHHHHHHHHHH
Q 012358 259 VVCED------------FPGLVTITGG---KWTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 259 ~i~~~------------~~gli~v~Gg---k~Tt~r~~Ae~v~d~~~~ 291 (465)
.+..+ .+|++.++|. .+|.++.+|+.+.+.+..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~g~~~a~G~~g~G~~~ap~~g~~la~~i~~ 361 (381)
T TIGR03197 314 AELAKDKNRPIAEPAPYYPGLYVLGGLGSRGLTSAPLAAEILAAQICG 361 (381)
T ss_pred HHhcccccccccccCCCCCCeEEEecccchHHHHHHHHHHHHHHHHhC
Confidence 22211 2577777773 489999999999998853
No 18
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.81 E-value=1.1e-18 Score=179.05 Aligned_cols=252 Identities=24% Similarity=0.265 Sum_probs=184.7
Q ss_pred HHHHHHHHhhCCCC--CCCceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcce
Q 012358 15 VGLKMYDLVAGRHL--LHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHA 91 (465)
Q Consensus 15 ~gl~lyd~l~~~~~--~~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t 91 (465)
.-+-.|..|..+.. -...++||++|.++++|.|+.+ ++.|+++.| ||.+||..+|.+|++.|.+.||.|+++|
T Consensus 133 ~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d----~v~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~c 208 (856)
T KOG2844|consen 133 QRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVD----DVYGGLYSPGDGVMDPAGLCQALARAASALGALVIENC 208 (856)
T ss_pred HHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchh----HheeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecC
Confidence 34556666542211 1467999999999999999998 899999987 8999999999999999999999999999
Q ss_pred eEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCC--CCCce
Q 012358 92 EVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYS--PEGMG 169 (465)
Q Consensus 92 ~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~--~~~~~ 169 (465)
.|++|....+ +.++|++. .| .|+|.+||||||.|+.++..|.|... ++.|..-.++++.+-.. +...+
T Consensus 209 pV~~i~~~~~--~~~gVeT~---~G---~iet~~~VNaaGvWAr~Vg~m~gvkv--PL~p~~H~YvvT~~IeGi~s~t~p 278 (856)
T KOG2844|consen 209 PVTGLHVETD--KFGGVETP---HG---SIETECVVNAAGVWAREVGAMAGVKV--PLVPMHHAYVVTSRIEGVSSLTRP 278 (856)
T ss_pred CcceEEeecC--Cccceecc---Cc---ceecceEEechhHHHHHhhhhcCCcc--cceeeeeeEEEecccCCccCCCcc
Confidence 9999987654 66789875 35 69999999999999999999999765 47888777777654211 11122
Q ss_pred EEeeccCCCcEEEEEecCCeEEEcccCCCC---C--CCC----CCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeee
Q 012358 170 LIVPKTKDGRVVFMLPWLGRTVAGTTDSDT---V--ITL----LPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIR 240 (465)
Q Consensus 170 ~~~~~~~dgr~~~~~P~~g~~liG~td~~~---~--~~~----~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~R 240 (465)
++. .-|++ +|++-+.+.++.|+.+... + .+. ...++.+.....++.+.+++ |.|...+|.+.-+|..
T Consensus 279 ~ir--D~DgS-vylR~~~~gil~GGyE~n~i~~egv~~~~~~~lqE~DWd~F~~hlesai~r~-P~l~k~~i~~~v~gpe 354 (856)
T KOG2844|consen 279 NIR--DLDGS-VYLRQQGDGILFGGYESNPIFTEGVPPGFATGLQEPDWDHFEPHLEAAIERV-PVLEKAGIKSLVNGPE 354 (856)
T ss_pred cee--cccce-EEEEecCCceeccccccCceeccccCCccccccccccHhhhHHHHHHHHHhC-chhhhcCccceecCcc
Confidence 332 34566 6788888888888865431 0 111 11256677788888888888 8999999999999999
Q ss_pred ecccCCCC-CCCCCcccceeeeecCC--CeEEEeCCchhchHHHHHHHHHH
Q 012358 241 PLAMDPSA-KNTESISRDHVVCEDFP--GLVTITGGKWTTYRSMAEDAVNA 288 (465)
Q Consensus 241 P~~~d~~~-~~~~~~~r~~~i~~~~~--gli~v~Ggk~Tt~r~~Ae~v~d~ 288 (465)
.+++|-.+ ..+++-.+.|++....+ |+ +..||- .+.+|++|+..
T Consensus 355 ~ftPD~~p~mGe~p~~~gy~v~~G~ns~G~-~~~GG~---Gk~la~wi~~g 401 (856)
T KOG2844|consen 355 TFTPDHLPIMGESPEVRGYWVACGFNSAGL-SFGGGC---GKYLAEWIIHG 401 (856)
T ss_pred ccCCccccccCCCccccceEEeecCCccce-eccCch---hHHHHHHhhcC
Confidence 88888543 12334457788776543 44 445552 45666666543
No 19
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.80 E-value=8.4e-18 Score=176.45 Aligned_cols=258 Identities=14% Similarity=0.056 Sum_probs=175.6
Q ss_pred Cceee-CHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEE
Q 012358 31 LSRYY-SAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIG 107 (465)
Q Consensus 31 ~~~~l-~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~g 107 (465)
.++++ +++|+++.+|.+...++.+...+|++++ ++.+||..++.+|++.+.++| ++|+.+++|+++..+++| .|.
T Consensus 142 ~~~~~~d~~el~e~eP~l~~~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg--~~~ 219 (494)
T PRK05257 142 GMEFSEDPAQIKEWAPLMMEGRDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDG--SWT 219 (494)
T ss_pred CCEEeCCHHHHHHhCcccccCCCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCC--CEE
Confidence 46774 9999999999995321122567788877 577999999999999999987 799999999999886543 245
Q ss_pred EEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCC--CCceeecceeEEEeCCCCCC-CCceEEeeccCCCcEEEEE
Q 012358 108 ARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDYYSP-EGMGLIVPKTKDGRVVFML 184 (465)
Q Consensus 108 V~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~--~~~i~p~kG~~lv~~~~~~~-~~~~~~~~~~~dgr~~~~~ 184 (465)
|.+.+..+|+..+|.|+.||||||.|++.++++.|... .+++.|.+|++++++.+..- ....-+++.+.-+...|.+
T Consensus 220 v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~~~~~~i~PvrGq~l~~~~~~~v~~~~~kvY~~~~~~~P~~~v 299 (494)
T PRK05257 220 VTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPEAKGYGGFPVSGQFLVCENPEVVAQHHAKVYGKASVGAPPMSV 299 (494)
T ss_pred EEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCccCCCCeeeeeEEEEEcCCHHHHhcCCeEEecCCCCCCCCCCC
Confidence 65543234543469999999999999999999998762 35689999999999654211 1111145432212223444
Q ss_pred ecC------Ce--EEEcccCCCCC----C-----------CCCC-CCC---HHH--------------HHHHHHHHhhhc
Q 012358 185 PWL------GR--TVAGTTDSDTV----I-----------TLLP-EPH---EDE--------------IQFILDAISDYL 223 (465)
Q Consensus 185 P~~------g~--~liG~td~~~~----~-----------~~~~-~~~---~~~--------------i~~ll~~~~~~~ 223 (465)
|.. |. +++||+..... + .... ... ... -...++.+++++
T Consensus 300 Ph~dtr~i~G~~~~~~GP~A~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 379 (494)
T PRK05257 300 PHLDTRVIDGKRSLLFGPFAGFSTKFLKNGSLLDLFSSVRPSNLLPMLAVGLDNFDLTKYLISQVMLSDEDRFEALREFY 379 (494)
T ss_pred CCCCCcEECCceeEEECCCccccHHhccCCCHHHHHHhcCccccHHHHHHHhhhhHHHHHHHHHHhhCHHHHHHHHHHhC
Confidence 442 32 67888764311 0 0000 000 001 134456678888
Q ss_pred cccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeecCCCeEEEeCC---chhchHHHHHHHHHHHHH
Q 012358 224 NVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGG---KWTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 224 ~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~~~gli~v~Gg---k~Tt~r~~Ae~v~d~~~~ 291 (465)
|.++.+|+....+|+|+..-+.+....+.+.-|+.++....|.+++.-+ ..||+..+|++|++.+..
T Consensus 380 -p~~~~~d~~~~~aG~R~Q~i~~~~~~~g~L~~~~~~i~~~~~~~~~l~~~SPgat~s~~i~~~v~~~~~~ 449 (494)
T PRK05257 380 -PNAKPEDWELIVAGQRVQIIKKDPKKGGVLQFGTEVVSSADGSIAALLGASPGASTAVPIMLEVLEKCFP 449 (494)
T ss_pred -CCCCHHHceEcCCceEeEEEccCCCCCCEEECCcEEEecCCCeEEEEcCCCchHHHHHHHHHHHHHHhCH
Confidence 8999999999999999988754323336777786565556676665544 389999999999998743
No 20
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.78 E-value=4.9e-17 Score=169.69 Aligned_cols=267 Identities=15% Similarity=0.102 Sum_probs=176.2
Q ss_pred HHHHHhhCCCCCCCceee-CHHHHHHhCCCccccccccCceEEEEecC-eeEchhHHHHHHHHHHHh-CCCEEEcceeEE
Q 012358 18 KMYDLVAGRHLLHLSRYY-SAQESAELFPTLAMKAKDRSLKGAVVYYD-GQMNDSRLNVGLALTAAL-AGAAVLNHAEVI 94 (465)
Q Consensus 18 ~lyd~l~~~~~~~~~~~l-~~~el~~~~P~l~~~~~~~~l~ga~~~~d-g~vdp~rl~~~l~~~A~~-~Ga~i~~~t~V~ 94 (465)
..|..+....--+..+++ +++|+++++|.+..++......+|+++++ +.+|+..++.+|++.+.+ .|++++.+++|+
T Consensus 130 ~r~~~~~~~~~f~~~~~~~d~~el~~~~P~l~~~r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~ 209 (497)
T PRK13339 130 KRYEALKQHPMFDNIEYTEDIEVMAKWMPLMMPGREANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVV 209 (497)
T ss_pred HHHHHhhccCCCCCcEEecCHHHHHHhCCcccCCCCCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEE
Confidence 344444332223578999 89999999999975222223567888775 569999999999999965 599999999999
Q ss_pred EEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCC--CCceeecceeEEEeCCCCCCCC-ceEE
Q 012358 95 SLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDYYSPEG-MGLI 171 (465)
Q Consensus 95 ~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~--~~~i~p~kG~~lv~~~~~~~~~-~~~~ 171 (465)
+|...+++ . |.|.+.+..+|+..+++||.||||||.|++.|++++|... .+.+.|.+|+++.++.+..-.. .+.+
T Consensus 210 ~I~~~~d~-~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~~~~~~i~PvkGq~l~l~~~~~v~~h~~~V 287 (497)
T PRK13339 210 DLERLSDG-G-WEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPESKHLGGFPISGQFLRCTNPEVVKQHQAKV 287 (497)
T ss_pred EEEECCCC-C-EEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCCccCCCceEeeeEEEEEecCHHHhhhcCceE
Confidence 99876333 2 5555433223433368999999999999999999998753 2579999999999864221111 1245
Q ss_pred eeccCCCcEEEEEecC------Ce--EEEcccCCCCC------C-C---C--CC-CC------CHHH-------------
Q 012358 172 VPKTKDGRVVFMLPWL------GR--TVAGTTDSDTV------I-T---L--LP-EP------HEDE------------- 211 (465)
Q Consensus 172 ~~~~~dgr~~~~~P~~------g~--~liG~td~~~~------~-~---~--~~-~~------~~~~------------- 211 (465)
++.++-+-..|.+|.. |. +++||+....+ . . . .. .. ....
T Consensus 288 Y~v~~~~~P~~~VPhlDtr~i~G~~~v~~GP~A~~~~~~~r~~~~~d~~~~l~~~~~~~~~~~~~~~~~l~~~~~~e~~~ 367 (497)
T PRK13339 288 YSKEPVGTPPMTVPHLDTRYIDGKRSLLFGPYAGFGPKFLKHGSNLDLFKSVKPYNITTMLAVAVKNMPLIKYSIDQVMQ 367 (497)
T ss_pred eCCCCCCCCCCcCCCCCCcEEcCceeEEECCCccchHHHhccCCHHHHHHHhCccCcHHHHHHHHhccHHHHHHHHHHhh
Confidence 6543222223455543 32 57888765320 0 0 0 00 00 0000
Q ss_pred -HHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeee-----ecCCCeEEEeCC---chhchHHHH
Q 012358 212 -IQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVC-----EDFPGLVTITGG---KWTTYRSMA 282 (465)
Q Consensus 212 -i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~-----~~~~gli~v~Gg---k~Tt~r~~A 282 (465)
....++.+++++ |.++.+|+....+|+||..-+. .++...||.+. ....|.+++.-+ ..||+..+|
T Consensus 368 ~k~~~~~~~~~~~-P~~~~~D~~~~~aGiR~Q~i~~----~~~~~~dfl~~g~~~i~~~~~s~~~lna~SPgATssl~ia 442 (497)
T PRK13339 368 TKEGRMNHLRTFY-PEARAEDWRLYTAGKRVQVIKD----TPEHGKGFIQFGTEVVNSQDHSVIALLGESPGASTSVSVA 442 (497)
T ss_pred CHHHHHHHHHHhC-CCCCHHHeeEcCCceEEEEEeC----CCCccCCEEEecceeeecCCCeEEEecCCCcHHHhhHHHH
Confidence 134556778899 8999999999999999987653 22333466443 234565555544 389999999
Q ss_pred HHHHHHHHH
Q 012358 283 EDAVNAAIK 291 (465)
Q Consensus 283 e~v~d~~~~ 291 (465)
++|++.+-.
T Consensus 443 ~~v~~~~f~ 451 (497)
T PRK13339 443 LEVLERNFP 451 (497)
T ss_pred HHHHHHHhH
Confidence 999998753
No 21
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.76 E-value=4e-17 Score=165.87 Aligned_cols=221 Identities=18% Similarity=0.167 Sum_probs=150.3
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGA 108 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV 108 (465)
++++|+++|+++++|.++.+ .+.|+++++ ++++||.+++.+|++.+.++ |++|+++++|++|.. + .|
T Consensus 109 ~~~~l~~~~~~~~~p~l~~~----~~~~~~~~~~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~----~v 177 (365)
T TIGR03364 109 RVELLTPAEVAAKFPALRLD----GLRGGLHSPDELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET---G----TV 177 (365)
T ss_pred CeEEECHHHHHHhCCCCCcc----CceEEEEcCCCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C----eE
Confidence 68999999999999999743 678888887 68899999999999988775 999999999999953 1 35
Q ss_pred EEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCC-CCCceE------E-----e----
Q 012358 109 RIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYS-PEGMGL------I-----V---- 172 (465)
Q Consensus 109 ~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~-~~~~~~------~-----~---- 172 (465)
++. .| +++|+.||||+|+|+..+...++.. .++.|.||+.+++.+... .....+ . .
T Consensus 178 ~t~---~g---~i~a~~VV~A~G~~s~~l~~~~~~~--~~~~p~~~q~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (365)
T TIGR03364 178 RTS---RG---DVHADQVFVCPGADFETLFPELFAA--SGVRRCKLQMMRTAPQPRLPLGTALLTGLSLRRYEGFAELPS 249 (365)
T ss_pred EeC---CC---cEEeCEEEECCCCChhhhCcchhhc--cCcceEEEEeeeccCCCCCcCCccccccceeeechhHhhCcc
Confidence 543 24 4889999999999999987666544 347899999888753211 000000 0 0
Q ss_pred ------------ec-cCCCcEEEEEecC-CeEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeee
Q 012358 173 ------------PK-TKDGRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSG 238 (465)
Q Consensus 173 ------------~~-~~dgr~~~~~P~~-g~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG 238 (465)
+. ...+..+|++|.. |.+++|.+.+... .++...+.+-.+.+.+.+.+++ .+...++...|+|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~--~l~~~~~~~~w~G 326 (365)
T TIGR03364 250 AAALKARLQEEEPELLEWGIHLMVSQNPDGELIIGDSHEYGL-APDPFDDEEIDNLILAEAKTIL--GLPDLDIVERWQG 326 (365)
T ss_pred hHHHHhhhcccCchhhhcCeEEEEEECCCCCEEecCcccccC-CCCCcchHHHHHHHHHHHHHhc--CCCCCceEEEEeE
Confidence 00 0123347889985 6788998754322 1122223344466777777665 5888899999999
Q ss_pred eeecccCCCCCCCCCcccceeeeecCCCeEEEeC--Cc-hhchHHHHH
Q 012358 239 IRPLAMDPSAKNTESISRDHVVCEDFPGLVTITG--GK-WTTYRSMAE 283 (465)
Q Consensus 239 ~RP~~~d~~~~~~~~~~r~~~i~~~~~gli~v~G--gk-~Tt~r~~Ae 283 (465)
+||.++|.. +.+....+|++.++| |. +|.++.+|+
T Consensus 327 ~r~~t~d~~----------~v~~~~~~g~~~a~G~~g~G~~~ap~~~~ 364 (365)
T TIGR03364 327 VYASSPPAP----------IFLERPDDGVTVVVVTSGAGMTLSFGLAE 364 (365)
T ss_pred EecCCCCCC----------ceecCCCCCeEEEEecCCCcccccccccC
Confidence 999987531 111111256555555 32 677777765
No 22
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.76 E-value=2.5e-16 Score=160.67 Aligned_cols=233 Identities=12% Similarity=0.078 Sum_probs=163.7
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 109 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~ 109 (465)
++++++++|+.+++|.++.+ ...++++.+ +|++||.+++..|.+.+.++|++++.+++|+++..+++ . +.|.
T Consensus 109 ~~~~l~~~e~~~~~P~l~~~----~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~--~-~~v~ 181 (380)
T TIGR01377 109 EHELLSSKQLKQRFPNIRVP----RNEVGLLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTEL--L-VTVK 181 (380)
T ss_pred CeEEcCHHHHHHhCCCCcCC----CCceEEEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCC--e-EEEE
Confidence 57899999999999999743 455666665 78899999999999999999999999999999987653 3 3455
Q ss_pred EEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCC--C---CCceEEeeccCCCcEEEEE
Q 012358 110 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYS--P---EGMGLIVPKTKDGRVVFML 184 (465)
Q Consensus 110 ~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~--~---~~~~~~~~~~~dgr~~~~~ 184 (465)
+. ++ ++.|+.||+|+|.|+..+++++|... ++.|.+++...+..... . ...+.++. ......+|+.
T Consensus 182 ~~---~~---~i~a~~vV~aaG~~~~~l~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~y~~ 252 (380)
T TIGR01377 182 TT---KG---SYQANKLVVTAGAWTSKLLSPLGIEI--PLQPLRINVCYWREKEPGSYGVSQAFPCFLV-LGLNPHIYGL 252 (380)
T ss_pred eC---CC---EEEeCEEEEecCcchHHHhhhcccCC--CceEEEEEEEEEecCCccccCccCCCCEEEE-eCCCCceEec
Confidence 42 23 69999999999999999999888764 47788887555422111 0 12233332 1122246788
Q ss_pred ecC--CeEEEcccCCCC-CCC----CCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccc
Q 012358 185 PWL--GRTVAGTTDSDT-VIT----LLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRD 257 (465)
Q Consensus 185 P~~--g~~liG~td~~~-~~~----~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~ 257 (465)
|.. +..++|...... .++ .+..++...++.+.+.+.+++ |.+.... ...|.|+||.++|+.
T Consensus 253 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~-~~~~~~~~~~t~D~~---------- 320 (380)
T TIGR01377 253 PSFEYPGLMKVYYHHGQQIDPDERDCPFGADIEDVQILRKFVRDHL-PGLNGEP-KKGEVCMYTNTPDEH---------- 320 (380)
T ss_pred CCCCCCceEEEEeCCCCccCcccccCCCCCCHHHHHHHHHHHHHHC-CCCCCCc-ceeeEEEeccCCCCC----------
Confidence 874 245555322111 011 122366778999999999999 8887544 578999999988852
Q ss_pred eeeeec--CCCeEEEeCC---chhchHHHHHHHHHHHHH
Q 012358 258 HVVCED--FPGLVTITGG---KWTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 258 ~~i~~~--~~gli~v~Gg---k~Tt~r~~Ae~v~d~~~~ 291 (465)
+.|-.. .+|++-.+|. .+|.++.+|+.+.+.+..
T Consensus 321 piIg~~p~~~~l~va~G~~g~G~~~~p~~g~~la~li~~ 359 (380)
T TIGR01377 321 FVIDLHPKYDNVVIGAGFSGHGFKLAPVVGKILAELAMK 359 (380)
T ss_pred eeeecCCCCCCEEEEecCCccceeccHHHHHHHHHHHhc
Confidence 233222 2477766663 489999999999999864
No 23
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.76 E-value=8.5e-17 Score=168.41 Aligned_cols=257 Identities=15% Similarity=0.148 Sum_probs=171.4
Q ss_pred HHHHhhCCCCCCCceeeCHHHHHHhCCCcccccc---ccCceEEEEec-C-eeEchhHHHHHHHHHHHh----CC--CEE
Q 012358 19 MYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAK---DRSLKGAVVYY-D-GQMNDSRLNVGLALTAAL----AG--AAV 87 (465)
Q Consensus 19 lyd~l~~~~~~~~~~~l~~~el~~~~P~l~~~~~---~~~l~ga~~~~-d-g~vdp~rl~~~l~~~A~~----~G--a~i 87 (465)
.|+.+. +..+++++++++|+++++|.+...++ .+...+|++.+ + +.+||..++.+|++.|.+ +| ++|
T Consensus 157 ~~~~~~--~~~~~~e~ld~~el~e~eP~v~~~~~~~~~~e~~~Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i 234 (497)
T PTZ00383 157 RYPVFK--ELFPSMQLLDKKEIHRVEPRVVLKNNHTLREEPLAALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISI 234 (497)
T ss_pred HHHHHH--ccCCCeEEECHHHHHHhCcccccCccccccccceEEEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEE
Confidence 454443 23457899999999999999852100 01356788877 4 469999999999999999 88 678
Q ss_pred EcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCC
Q 012358 88 LNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEG 167 (465)
Q Consensus 88 ~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~ 167 (465)
+++++|++|...++ .++.|.+. +| +|+|+.||||||+|++.|+++.|+.....+.|.+|.+++++.. .
T Consensus 235 ~~~t~V~~I~~~~~--~~~~V~T~---~G---~i~A~~VVvaAG~~S~~La~~~Gi~~~~~i~Pv~G~~~~~~~~----~ 302 (497)
T PTZ00383 235 NLNTEVLNIERSND--SLYKIHTN---RG---EIRARFVVVSACGYSLLFAQKMGYGLEYSCLPVAGSFYFSGNI----L 302 (497)
T ss_pred EeCCEEEEEEecCC--CeEEEEEC---CC---EEEeCEEEECcChhHHHHHHHhCCCCCCCEEecCceEEEcChh----h
Confidence 99999999988653 55667653 34 6999999999999999999999986667899999999888631 2
Q ss_pred ceEEeeccCCCcE----EEEEec---CCeEEEcccCCCCC--CC---C---------CCCC-----------CHHHHH--
Q 012358 168 MGLIVPKTKDGRV----VFMLPW---LGRTVAGTTDSDTV--IT---L---------LPEP-----------HEDEIQ-- 213 (465)
Q Consensus 168 ~~~~~~~~~dgr~----~~~~P~---~g~~liG~td~~~~--~~---~---------~~~~-----------~~~~i~-- 213 (465)
.+.+++.+.. .. ++..|. +|.+++|||..... .. . .... ...-..
T Consensus 303 ~~kVY~v~~p-~~Pf~~vH~d~~i~~~g~~~~GP~A~~~~~~e~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (497)
T PTZ00383 303 NGKVYTVQNP-ALPFAAVHGDPDIIAKGKTRFGPTALPLPLLERYNMSSLPDFLKVWNPDLNLLAVYFDLFKDSTMRKYV 381 (497)
T ss_pred cCceecCCCC-CCCCcCccCCCccCCCCeEEEccCcccchHHhCCCCCchHHHHHhcCCChhHHHhHHHHhhChhHHHHH
Confidence 2234432211 11 122222 45688999975421 00 0 0110 011112
Q ss_pred --------------HHHHHHhhhccccCCcCCeeE--eeeeeeecccCCCCCCCCCcccceeeeecCCCeEEEeCC--ch
Q 012358 214 --------------FILDAISDYLNVKVRRTDVLS--AWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGG--KW 275 (465)
Q Consensus 214 --------------~ll~~~~~~~~p~L~~~~i~~--~waG~RP~~~d~~~~~~~~~~r~~~i~~~~~gli~v~Gg--k~ 275 (465)
..++.+++++ |.++.+|+.. .++|+||..-+... .++.=+-.++.+..|.|...|. .-
T Consensus 382 ~~~~~~e~~~~~k~~~~~~~~~~~-P~~~~~d~~~~~~~~GvR~Q~i~~~~---~~L~~g~~~i~~~~~~i~~~~~spga 457 (497)
T PTZ00383 382 LRNFLFEVPLLNKYLFLKDARKIV-PSLTRKDLRYCVGYGGVRPQLIDKVS---KKLLLGEGKIDPGKGIIFNITPSPGA 457 (497)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhC-CCCCHHHeeeccCCCceEEEEEECCC---CeEecCceEEecCCCcEEeccCCCcH
Confidence 2334566888 8999999986 46699998876421 2221122233345675555553 25
Q ss_pred hchHHHHHHHHHHHHHcCC
Q 012358 276 TTYRSMAEDAVNAAIKSGK 294 (465)
Q Consensus 276 Tt~r~~Ae~v~d~~~~~~~ 294 (465)
||+..-|+.=+..+++.++
T Consensus 458 st~l~~~~~d~~~~~~~~~ 476 (497)
T PTZ00383 458 TTCLGNAESDMREICERLG 476 (497)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 9999999998888988764
No 24
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.73 E-value=2.5e-16 Score=150.54 Aligned_cols=242 Identities=22% Similarity=0.238 Sum_probs=156.6
Q ss_pred CCceeeCHHHHHHhCCCccccccccCce-EEEEe-cCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcC-------
Q 012358 30 HLSRYYSAQESAELFPTLAMKAKDRSLK-GAVVY-YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE------- 100 (465)
Q Consensus 30 ~~~~~l~~~el~~~~P~l~~~~~~~~l~-ga~~~-~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~------- 100 (465)
-+.++|+++++.+++|+|+.+ ++. |.+-. .+|++||+.|..++.+.|...||.+.. -+|++|+.+.
T Consensus 205 Ak~eLls~d~Lt~rfPwlnte----gVaLa~lG~e~EGwfdpw~LLs~~rrk~~~lGv~f~~-GeV~~Fef~sqr~v~~~ 279 (509)
T KOG2853|consen 205 AKVELLSPDELTKRFPWLNTE----GVALASLGVEKEGWFDPWALLSGIRRKAITLGVQFVK-GEVVGFEFESQRAVHAF 279 (509)
T ss_pred chhcccCHHHHhhhCCccccc----ceeeeecccccccccCHHHHHHHHHHHhhhhcceEec-ceEEEEEEecccceeee
Confidence 357899999999999999986 543 33333 479999999999999999999999886 5799987652
Q ss_pred --CC------CeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC-------CCCceeecceeEEEeCCCCCC
Q 012358 101 --AS------NRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN-------VQPMICPSSGVHIVLPDYYSP 165 (465)
Q Consensus 101 --~g------~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~-------~~~~i~p~kG~~lv~~~~~~~ 165 (465)
+| .++.+|.++- .++.+..+++..+|||||+|+.+|++++|+. +|.+|.|+|.+.+++..+..|
T Consensus 280 tDd~t~~~~~~~i~~vvV~m-~d~~~r~vk~al~V~aAGa~s~QvArlAgIG~g~g~L~vplPiepRKRyvyvi~~~~~P 358 (509)
T KOG2853|consen 280 TDDGTAKLRAQRISGVVVRM-NDALARPVKFALCVNAAGAWSGQVARLAGIGKGPGLLAVPLPIEPRKRYVYVIFAPDVP 358 (509)
T ss_pred cccchhhhhhcccceeEEec-CchhcCceeEEEEEeccCccHHHHHHHhccCCCCceeeecccCCccceeEEEEeCCCCC
Confidence 11 0234444431 1234458999999999999999999999753 356789999988877444344
Q ss_pred -CCceEEeeccCCCcEEEEEecC--CeEEEcccCCCC--CCCCCCCCCHHHH-HHHHHHHhhhccccCCcCCeeEeeeee
Q 012358 166 -EGMGLIVPKTKDGRVVFMLPWL--GRTVAGTTDSDT--VITLLPEPHEDEI-QFILDAISDYLNVKVRRTDVLSAWSGI 239 (465)
Q Consensus 166 -~~~~~~~~~~~dgr~~~~~P~~--g~~liG~td~~~--~~~~~~~~~~~~i-~~ll~~~~~~~~p~L~~~~i~~~waG~ 239 (465)
.+.++++ |..++|++..+ ++.++|.+..+. ++..+..++.+.. +.+.-.+...+ |.+...+|.++|+|+
T Consensus 359 Gl~~Pl~i----DpsG~f~Rrdglg~nfl~grsp~ed~~~d~~nldVD~d~F~qkiwP~L~nRV-P~fetakVqsaWaGy 433 (509)
T KOG2853|consen 359 GLDTPLTI----DPSGVFFRRDGLGGNFLCGRSPSEDEEPDHSNLDVDHDYFYQKIWPHLANRV-PAFETAKVQSAWAGY 433 (509)
T ss_pred CCCCceeE----CCCccEEEecCCCCceecccCCccccCCCccccccChHHHHhhhhHHHHhcc-cccceeeeeehhccc
Confidence 5566655 33347887764 567777653221 1222333332222 23333344445 899999999999998
Q ss_pred eeccc-CCCCCCCCCcccceeeeecCCCeEEEeC--C-----chhchHHHHHHHHHHHH
Q 012358 240 RPLAM-DPSAKNTESISRDHVVCEDFPGLVTITG--G-----KWTTYRSMAEDAVNAAI 290 (465)
Q Consensus 240 RP~~~-d~~~~~~~~~~r~~~i~~~~~gli~v~G--g-----k~Tt~r~~Ae~v~d~~~ 290 (465)
.-.-. |. ..+...|-+. .++.-++| | ....+|++||.|+|...
T Consensus 434 yD~NtfD~-----ngViG~HP~y---~Nly~atGFsghGvqqs~avgRAiaElIldG~f 484 (509)
T KOG2853|consen 434 YDHNTFDD-----NGVIGEHPLY---TNLYMATGFSGHGVQQSPAVGRAIAELILDGAF 484 (509)
T ss_pred cccccccc-----CCcccCCcce---eeeeeeecccccchhcchHHHHHHHHHHhcCce
Confidence 65422 21 1122222222 13333333 2 14556888888888753
No 25
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.71 E-value=2.3e-15 Score=157.64 Aligned_cols=228 Identities=14% Similarity=0.091 Sum_probs=154.5
Q ss_pred CCCceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEE
Q 012358 29 LHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIG 107 (465)
Q Consensus 29 ~~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~g 107 (465)
++.+++|+++|+++++|.. ...++++++ ++++||.+++.+|++.|.++|++|+++++|++|.. + ..+.
T Consensus 148 ~~~~~~l~~~e~~~~~~~~-------~~~~g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~---~~~~ 216 (460)
T TIGR03329 148 INSWQRLSEGELARRTGSA-------RHLEGFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-G---QPAV 216 (460)
T ss_pred CCCeEEcCHHHHHHHhCCC-------cceEEEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-C---CceE
Confidence 3346899999999999853 345666665 68899999999999999999999999999999975 3 2244
Q ss_pred EEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCC-----CCceEEeeccCCCc--E
Q 012358 108 ARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSP-----EGMGLIVPKTKDGR--V 180 (465)
Q Consensus 108 V~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~-----~~~~~~~~~~~dgr--~ 180 (465)
|++. .| +|+|+.||+|+|+|+..+...++. .+.|.+++.+++.+.... ......+. |.+ .
T Consensus 217 v~t~---~g---~v~A~~VV~Atga~s~~l~~~~~~----~~~p~~~~~~~t~pl~~~~~~~~~~~~~~~~---d~~~~~ 283 (460)
T TIGR03329 217 VRTP---DG---QVTADKVVLALNAWMASHFPQFER----SIAIVSSDMVITEPAPDLLAATGLDHGTSVL---DSRIFV 283 (460)
T ss_pred EEeC---Cc---EEECCEEEEcccccccccChhhcC----eEEEeccceEecCCCcHHHHhhcCCCCceEe---cchhhh
Confidence 5542 24 699999999999999988776543 355666766565421100 01111111 222 2
Q ss_pred EEEEecC-CeEEEcccCCCC--CCCCC--CCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcc
Q 012358 181 VFMLPWL-GRTVAGTTDSDT--VITLL--PEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESIS 255 (465)
Q Consensus 181 ~~~~P~~-g~~liG~td~~~--~~~~~--~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~ 255 (465)
.|+.|.. |.+++|...... ....+ ........+.|.+.+.++| |.|.+..|.+.|+|+||.++|..+
T Consensus 284 ~y~r~~~dgrll~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f-P~L~~~~i~~~W~G~~~~t~D~~P------- 355 (460)
T TIGR03329 284 HYYRSTPDGRLMLGKGGNTFAYGGRMLPVFNQPSPYEALLTRSLRKFF-PALAEVPIAASWNGPSDRSVTGLP------- 355 (460)
T ss_pred hheeECCCCcEEEcCCccccccCcccccccCCchHHHHHHHHHHHHhC-CCcCCCeeeEEEeceeCCCCCCCc-------
Confidence 4667764 567888643221 11100 1112234577889999999 899999999999999999988532
Q ss_pred cceeeee--cCCCeEEEeC--Cc-hhchHHHHHHHHHHHHH
Q 012358 256 RDHVVCE--DFPGLVTITG--GK-WTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 256 r~~~i~~--~~~gli~v~G--gk-~Tt~r~~Ae~v~d~~~~ 291 (465)
.|-. ..+|++..+| |. ++.+..+++.+.+.+..
T Consensus 356 ---~iG~~~~~~gl~~a~G~~G~Gv~~a~~~G~~lA~li~g 393 (460)
T TIGR03329 356 ---FFGRLNGQPNVFYGFGYSGNGVAPSRMGGQILSSLVLG 393 (460)
T ss_pred ---eeeeecCCCCEEEEeCcCCCChhHHHHHHHHHHHHhcC
Confidence 1211 1257666666 43 78888888888887743
No 26
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.70 E-value=1.7e-15 Score=154.85 Aligned_cols=234 Identities=23% Similarity=0.277 Sum_probs=168.4
Q ss_pred eeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEE
Q 012358 33 RYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARI 110 (465)
Q Consensus 33 ~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~ 110 (465)
++++..++.+.+|.+..+ ...++++++ ++++||.+++.++++.+.++| +.+..+++|+.+...+ ++++|.+
T Consensus 122 ~~~~~~~~~~~~p~l~~~----~~~~a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~---~~~~v~t 194 (387)
T COG0665 122 ELLDAAEAAELEPALGPD----FVCGGLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG---RVVGVET 194 (387)
T ss_pred eeCCHHHHHHhCCCCCcc----cceeeEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC---cEEEEEe
Confidence 689999999999999875 477888887 688999999999999999999 5666799999998751 3466776
Q ss_pred EECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCce---EEeeccCCCcEEEEEec-
Q 012358 111 RNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMG---LIVPKTKDGRVVFMLPW- 186 (465)
Q Consensus 111 ~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~---~~~~~~~dgr~~~~~P~- 186 (465)
. .| +|.|+.||+|||+|+..+..+.+ ..+.++.|.+|+++.++......... .... . .....|++|.
T Consensus 195 ~---~g---~i~a~~vv~a~G~~~~~l~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~y~~~~~ 265 (387)
T COG0665 195 D---GG---TIEADKVVLAAGAWAGELAATLG-ELPLPLRPVRGQALTTEPPEGLLADGLAPVVLV-V-DDGGGYIRPRG 265 (387)
T ss_pred C---Cc---cEEeCEEEEcCchHHHHHHHhcC-CCcCccccccceEEEecCCCccccccccceEEE-e-cCCceEEEEcC
Confidence 4 24 59999999999999999999988 33346899999999986542211110 1111 1 2223577776
Q ss_pred CCeEEEcccCCCCC-CCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecc-cCCCCCCCCCcccceeeeecC
Q 012358 187 LGRTVAGTTDSDTV-ITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLA-MDPSAKNTESISRDHVVCEDF 264 (465)
Q Consensus 187 ~g~~liG~td~~~~-~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~-~d~~~~~~~~~~r~~~i~~~~ 264 (465)
.+..++|.+..... ...+....+..+..+++.+.+++ |.+....+...|+|.||.+ +|..+ -.+. ... .
T Consensus 266 ~g~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~~w~g~~~~t~pd~~P-~iG~------~~~-~ 336 (387)
T COG0665 266 DGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVARALL-PGLADAGIEAAWAGLRPPTTPDGLP-VIGR------AAP-L 336 (387)
T ss_pred CCcEEEeecccccCCCCccccCcchhHHHHHHHHHHhC-ccccccccceeeeccccCCCCCCCc-eeCC------CCC-C
Confidence 57788888765542 11111111114678999999999 8999999999999999977 77532 1110 001 2
Q ss_pred CCeEEEeCC---chhchHHHHHHHHHHHHH
Q 012358 265 PGLVTITGG---KWTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 265 ~gli~v~Gg---k~Tt~r~~Ae~v~d~~~~ 291 (465)
+|++.++|- .+|.+..+|+.+++.+..
T Consensus 337 ~~l~~a~G~~~~G~~~~p~~g~~lA~li~g 366 (387)
T COG0665 337 PNLYVATGHGGHGFTLAPALGRLLADLILG 366 (387)
T ss_pred CCEEEEecCCCcChhhccHHHHHHHHHHcC
Confidence 465555653 389999999999999865
No 27
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.69 E-value=1.5e-15 Score=166.00 Aligned_cols=230 Identities=18% Similarity=0.127 Sum_probs=160.9
Q ss_pred ceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEE
Q 012358 32 SRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARI 110 (465)
Q Consensus 32 ~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~ 110 (465)
+++++++|+.+++|.. ...++++++ +|++||..++.+|++.+.+ |++++.+++|+++...++ .+ .|.+
T Consensus 376 ~~~l~~~e~~~~~~~~-------~~~~g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~--~~-~v~t 444 (662)
T PRK01747 376 ARALDAEEAEELAGLP-------VPCGGIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDD--GW-QLDF 444 (662)
T ss_pred hhhCCHHHHHHHhCCC-------CCCCcEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCC--EE-EEEE
Confidence 5678888898888742 345677776 6889999999999999988 999999999999987653 33 3544
Q ss_pred EECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCC-CCCCceEEeeccCCCcEEEEEe-c-C
Q 012358 111 RNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYY-SPEGMGLIVPKTKDGRVVFMLP-W-L 187 (465)
Q Consensus 111 ~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~-~~~~~~~~~~~~~dgr~~~~~P-~-~ 187 (465)
. +|. .+.|+.||+|+|+|+..+..+. . .++.|.||+.+.++... .+....++. .+ .|++| . .
T Consensus 445 ~---~g~--~~~ad~VV~A~G~~s~~l~~~~--~--lpl~p~RGqv~~~~~~~~~~~~~~~~~----~~--~Y~~p~~~~ 509 (662)
T PRK01747 445 A---GGT--LASAPVVVLANGHDAARFAQTA--H--LPLYSVRGQVSHLPTTPALSALKQVLC----YD--GYLTPQPAN 509 (662)
T ss_pred C---CCc--EEECCEEEECCCCCcccccccc--C--CCcccccceEEeecCCccccccCceeE----CC--ceeCCCCCC
Confidence 2 242 4689999999999999887653 2 35889999988876432 111111221 12 47888 5 4
Q ss_pred CeEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccC-----CcCCeeEeeeeeeecccCCCCCCCCCcc------c
Q 012358 188 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKV-----RRTDVLSAWSGIRPLAMDPSAKNTESIS------R 256 (465)
Q Consensus 188 g~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L-----~~~~i~~~waG~RP~~~d~~~~~~~~~~------r 256 (465)
|..++|.|.... ..+..++.++.+.+++.+.+++ |.+ ...++...|+|+||.++|..+ -.+.+. +
T Consensus 510 g~~~iGat~~~~--~~~~~~~~~~~~~~~~~l~~~~-P~l~~~~~~~~~~~~~~aG~R~~tpD~~P-iIG~~~~~~~~~~ 585 (662)
T PRK01747 510 GTHCIGASYDRD--DTDTAFREADHQENLERLAECL-PQALWAKEVDVSALQGRVGFRCASRDRLP-MVGNVPDEAATLA 585 (662)
T ss_pred CceEeCcccCCC--CCCCCCCHHHHHHHHHHHHHhC-CCchhhhccCccccCceEEEeccCCCccc-ccCCCCCHHHHHH
Confidence 677899876542 2334567788889999999999 766 456788999999999998643 112110 0
Q ss_pred cee-------e--eecCCCeEEEeC--C-chhchHHHHHHHHHHHHH
Q 012358 257 DHV-------V--CEDFPGLVTITG--G-KWTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 257 ~~~-------i--~~~~~gli~v~G--g-k~Tt~r~~Ae~v~d~~~~ 291 (465)
+|. . ....+|++.++| | .+|+++.+|+.+++.+..
T Consensus 586 ~y~~l~~~~~~~~~~~~~gl~v~~G~gs~Gl~~ap~~a~~lA~li~g 632 (662)
T PRK01747 586 EYAALANQQPARDAPRLPGLYVAGALGSRGLCSAPLGAELLASQIEG 632 (662)
T ss_pred HHHhhhhccccccCCCCCCeEEEecccccHHHHHHHHHHHHHHHHhC
Confidence 010 0 111257666666 3 489999999999999853
No 28
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=99.59 E-value=1.5e-14 Score=137.25 Aligned_cols=251 Identities=18% Similarity=0.206 Sum_probs=182.6
Q ss_pred CCCCCCCceeeCHHHHHHhCCCccccccccCceEEEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCe
Q 012358 25 GRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNR 104 (465)
Q Consensus 25 ~~~~~~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~ 104 (465)
-.++++..++|...|+.++||..+ ++.+.+....|.+|-..++..+.+.....|..+.++-+|.++..+.++--
T Consensus 157 ~qN~v~glrmieg~ei~~~EP~cr------gvkAl~sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~ 230 (453)
T KOG2665|consen 157 TQNGVPGLRMIEGSEIMEMEPYCR------GVKALLSPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATF 230 (453)
T ss_pred hhcCCCCeeeeccchhhhcChhhh------hhhhhcCCCcceeehHHHHHHHHHHHHHhcccccccceeccchhccCCCC
Confidence 468899999999999999999986 56654445578889888999999999999999999999999987653200
Q ss_pred EEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccCCCcE----
Q 012358 105 IIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRV---- 180 (465)
Q Consensus 105 v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dgr~---- 180 (465)
-+-+.+.. |...+++++.||-|||..+|.+.+..|.+..+.|.|.+|.++.+.+.......+-++|. +|.|+
T Consensus 231 ~Ypivv~n---gk~ee~r~~~~vtc~gl~sdr~aa~sgc~~dPriVpfrG~ylll~~ek~h~vk~niyPv-pd~RFpflG 306 (453)
T KOG2665|consen 231 SYPIVVLN---GKGEEKRTKNVVTCAGLQSDRCAALSGCELDPRIVPFRGEYLLLKPEKLHLVKGNIYPV-PDPRFPFLG 306 (453)
T ss_pred CCceEEec---CccceeEEeEEEEeccccHhHHHHHhCCCCCCeeeeccchhhhcChHHhccccCceeeC-CCCCCcccc
Confidence 12344442 33347999999999999999999999877666899999999887554444444456663 45554
Q ss_pred EEEEecC-CeEEEcccCCC---------C-----CC------C---------CCCCCCHHHHHHHH----HHHhhhcccc
Q 012358 181 VFMLPWL-GRTVAGTTDSD---------T-----VI------T---------LLPEPHEDEIQFIL----DAISDYLNVK 226 (465)
Q Consensus 181 ~~~~P~~-g~~liG~td~~---------~-----~~------~---------~~~~~~~~~i~~ll----~~~~~~~~p~ 226 (465)
+...|+. |.+.+|+...- . +. + .+..+++..-+.++ ..+++++ |.
T Consensus 307 vhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyi-Pd 385 (453)
T KOG2665|consen 307 VHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLASKKFDYGVNEMYKEKFIAAQVKELQKYI-PD 385 (453)
T ss_pred ccccCcCCCceecCCCceEEEEEEeeccccccccchhhheecCchHHHHHhhcCcccchHhhhhhhhhhhHHHHHhC-cc
Confidence 3456764 56667775310 0 00 0 12334444444455 7788899 99
Q ss_pred CCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeec----CCCeEEEeCCc---hhchHHHHHHHHHHHH
Q 012358 227 VRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED----FPGLVTITGGK---WTTYRSMAEDAVNAAI 290 (465)
Q Consensus 227 L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~----~~gli~v~Ggk---~Tt~r~~Ae~v~d~~~ 290 (465)
|+..+|.+..+|+|...-|+ .+.+..||++... .++++++.+.. .|++.+||++|.|.+.
T Consensus 386 lk~~di~rGpaGvRaqald~----~gnlv~DFVfd~g~g~~~p~llh~rnapSPgaTSSlAIa~mIa~k~~ 452 (453)
T KOG2665|consen 386 LKDSDIERGPAGVRAQALDG----DGNLVDDFVFDGGEGHLVPRLLHVRNAPSPGATSSLAIAKMIADKFL 452 (453)
T ss_pred ccccccccCcccccchhccC----CCCCchheEEecCccccccceEEecCCCCccchhhHHHHHHHHHHhc
Confidence 99999999999999655554 3455678877632 25699999864 8999999999999764
No 29
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=99.28 E-value=4.5e-11 Score=113.22 Aligned_cols=215 Identities=16% Similarity=0.161 Sum_probs=146.3
Q ss_pred CCceeeCHHHHHHhCCCccccccccCceEEEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEE
Q 012358 30 HLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 109 (465)
Q Consensus 30 ~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~ 109 (465)
...+.|+..|+. .+|.- ..-+..|......+..++.-|-+...++|+++.. -+|.++..-.
T Consensus 120 ~~fr~l~e~EL~-~f~~~--------~~~G~~~Tt~~sE~~~ylpyl~k~l~e~Gvef~~-r~v~~l~E~~--------- 180 (342)
T KOG3923|consen 120 YGFRDLTERELL-GFPDY--------STYGIHFTTYLSEGPKYLPYLKKRLTENGVEFVQ-RRVESLEEVA--------- 180 (342)
T ss_pred hhhhcCCHHHhc-CCCCc--------cccceeEEEeeccchhhhHHHHHHHHhcCcEEEE-eeeccHHHhc---------
Confidence 445667777775 66643 2234555556678899999999999999999874 4676663211
Q ss_pred EEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccCCCcEEEEEecCCe
Q 012358 110 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGR 189 (465)
Q Consensus 110 ~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dgr~~~~~P~~g~ 189 (465)
.=.+|+||||||.|+..++. .+ .+.|.||+.+-++.+.. .+ .++. +.++ .|++|-.+.
T Consensus 181 ----------~~~~DVivNCtGL~a~~L~g---Dd---~~yPiRGqVl~V~ApWv--kh-f~~~--D~~~-ty~iP~~~~ 238 (342)
T KOG3923|consen 181 ----------RPEYDVIVNCTGLGAGKLAG---DD---DLYPIRGQVLKVDAPWV--KH-FIYR--DFSR-TYIIPGTES 238 (342)
T ss_pred ----------cCCCcEEEECCccccccccC---Cc---ceeeccceEEEeeCCce--eE-EEEe--cCCc-cEEecCCce
Confidence 12478999999999998863 33 28999999998876532 23 4443 2222 588999889
Q ss_pred EEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCC---CCCCCCcccceeeeecCCC
Q 012358 190 TVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPS---AKNTESISRDHVVCEDFPG 266 (465)
Q Consensus 190 ~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~---~~~~~~~~r~~~i~~~~~g 266 (465)
+.+|++-.+. ..+..+++++...+++...++. |.|...+|+..|.|+||-.+.-. ...++ -++.+.+.. +-|
T Consensus 239 V~lGg~~Q~g--~w~~ei~~~D~~dIl~rc~aL~-P~l~~a~ii~E~vGlRP~Rk~vRlE~e~~~~-~~k~~~VVH-nYG 313 (342)
T KOG3923|consen 239 VTLGGTKQEG--NWNLEITDEDRRDILERCCALE-PSLRHAEIIREWVGLRPGRKQVRLEAELRTR-GGKRLTVVH-NYG 313 (342)
T ss_pred EEEccccccC--cccCcCChhhHHHHHHHHHHhC-cccccceehhhhhcccCCCCceeeeeeeecC-CCccceeEe-ecc
Confidence 9999886553 2345788899999999999999 99999999999999999754310 00011 122333221 111
Q ss_pred eEEEeCCchhchHHHHHHHHHHHHHcC
Q 012358 267 LVTITGGKWTTYRSMAEDAVNAAIKSG 293 (465)
Q Consensus 267 li~v~Ggk~Tt~r~~Ae~v~d~~~~~~ 293 (465)
. .|..+|.+.-+|-+++..+...+
T Consensus 314 H---gG~G~Tl~wGtAlea~~Lv~~~l 337 (342)
T KOG3923|consen 314 H---GGNGFTLGWGTALEAAKLVLDAL 337 (342)
T ss_pred C---CCCceecccchHHHHHHHHHHHh
Confidence 1 22346777888888888886653
No 30
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.14 E-value=7.2e-09 Score=104.89 Aligned_cols=268 Identities=15% Similarity=0.103 Sum_probs=168.9
Q ss_pred HHHHHhhCCCCCCCceee-CHHHHHHhCCCccccccccCceEEEEecCee-EchhHHHHHHHHHHHhC-CCEEEcceeEE
Q 012358 18 KMYDLVAGRHLLHLSRYY-SAQESAELFPTLAMKAKDRSLKGAVVYYDGQ-MNDSRLNVGLALTAALA-GAAVLNHAEVI 94 (465)
Q Consensus 18 ~lyd~l~~~~~~~~~~~l-~~~el~~~~P~l~~~~~~~~l~ga~~~~dg~-vdp~rl~~~l~~~A~~~-Ga~i~~~t~V~ 94 (465)
+=|+.|....--...++. +++++++..|.+-..++.+.-.++-+...|. ||=..|+..|++.+.+. |++++.+++|+
T Consensus 127 kR~~~l~~~~lF~~Me~sed~~~i~~w~PLvm~gR~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~ 206 (488)
T PF06039_consen 127 KRYEALKEHPLFPGMEFSEDPEQIAEWAPLVMEGRDPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVT 206 (488)
T ss_pred HHHHHHhcCCCCCCcEEccCHHHHHhhCCeecCCCCCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeC
Confidence 556777654445567777 6999999999986544433445555566676 78889999999999888 99999999999
Q ss_pred EEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCC--CCceeecceeEEEeCCCCC--CCCceE
Q 012358 95 SLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDYYS--PEGMGL 170 (465)
Q Consensus 95 ~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~--~~~i~p~kG~~lv~~~~~~--~~~~~~ 170 (465)
+|.+.++| -|.|.+.+..+|+..+|+|+.|++.||.+|=.+++..|++. .+--.|..|+.++.+.+.. .+..-+
T Consensus 207 ~i~r~~dg--~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyggfPVsG~fl~~~n~~vv~~H~aKV 284 (488)
T PF06039_consen 207 DIKRNGDG--RWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYGGFPVSGQFLRCKNPEVVAQHNAKV 284 (488)
T ss_pred eeEECCCC--CEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhcccCCCcccceEEecCCHHHHHHhccee
Confidence 99998763 58899988878888899999999999999999999888732 2345688898888854311 011111
Q ss_pred EeeccCCCcEEEEEec------CC--eEEEcccCCCCC---------------CCCCC------CCC-HHHHHHH-----
Q 012358 171 IVPKTKDGRVVFMLPW------LG--RTVAGTTDSDTV---------------ITLLP------EPH-EDEIQFI----- 215 (465)
Q Consensus 171 ~~~~~~dgr~~~~~P~------~g--~~liG~td~~~~---------------~~~~~------~~~-~~~i~~l----- 215 (465)
|- +..-|..-+.+|. .| ..++||+....+ .+++. ..+ .+-..||
T Consensus 285 Yg-ka~vGaPPmSvPHlDtRiidGk~~llFGP~Agfs~KfLK~GS~~Dl~~S~~~~N~~~ml~~~~~n~~L~kYLi~q~~ 363 (488)
T PF06039_consen 285 YG-KASVGAPPMSVPHLDTRIIDGKKSLLFGPFAGFSPKFLKNGSYLDLFKSLRPDNLFPMLAVGLDNFDLTKYLIGQVL 363 (488)
T ss_pred ee-eCCCCCCCccCccCCchhcCCCcceeecCccccchHHhcCCcHHHHHhhcCcccHHHHHHHHhhhhhHHHHHHHhhc
Confidence 11 1111111122222 12 356787653211 01110 000 1111333
Q ss_pred ------HHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeecCCCeEE-EeCC--chhchHHHHHHHH
Q 012358 216 ------LDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVT-ITGG--KWTTYRSMAEDAV 286 (465)
Q Consensus 216 ------l~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~~~gli~-v~Gg--k~Tt~r~~Ae~v~ 286 (465)
++.+++++ |..+.+|.....+|.||..-+......+.+.=.-.++.+..|.|. +.|. .-+|+-.+.-+++
T Consensus 364 ~s~~~r~~~Lr~f~-P~a~~~DW~l~~AGqRvQiIkk~~~kgG~L~fGTevI~s~dGsiaaLLGASPGASTav~iMl~vl 442 (488)
T PF06039_consen 364 QSKEDRMEALRKFY-PSAKPEDWELITAGQRVQIIKKDEKKGGVLQFGTEVITSADGSIAALLGASPGASTAVSIMLDVL 442 (488)
T ss_pred cCHHHHHHHHHHhC-ccCChhceEEEecCceeeEEecCCCCCcEEecCceEEecCCCceEeeccCCCChhhhHHHHHHHH
Confidence 34667788 899999999999999998865422222223223334445567333 3442 1366655555555
Q ss_pred HHH
Q 012358 287 NAA 289 (465)
Q Consensus 287 d~~ 289 (465)
+..
T Consensus 443 ~~c 445 (488)
T PF06039_consen 443 ERC 445 (488)
T ss_pred HHH
Confidence 444
No 31
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.04 E-value=6.5e-09 Score=98.23 Aligned_cols=216 Identities=16% Similarity=0.102 Sum_probs=136.6
Q ss_pred CeeEchhHHHHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhc
Q 012358 64 DGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 142 (465)
Q Consensus 64 dg~vdp~rl~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g 142 (465)
.+|++|+.+|..++..|++.| ++++. -.|.++..+. + ++.+|-.... -+.-..+.+++||+++|||+.++....+
T Consensus 141 taqvhP~lFc~~i~sea~k~~~V~lv~-Gkv~ev~dEk-~-r~n~v~~ae~-~~ti~~~d~~~ivvsaGPWTskllp~~r 216 (380)
T KOG2852|consen 141 TAQVHPYLFCHFILSEAEKRGGVKLVF-GKVKEVSDEK-H-RINSVPKAEA-EDTIIKADVHKIVVSAGPWTSKLLPFTR 216 (380)
T ss_pred cceeCHHHHHHHHHHHHHhhcCeEEEE-eeeEEeeccc-c-cccccchhhh-cCceEEeeeeEEEEecCCCchhhccccc
Confidence 489999999999999998887 77765 4688886433 3 6666544311 1222357889999999999999976543
Q ss_pred CCCCCceeecceeEEEeCCCCCCCC-ceEEee-ccCCC-cE----EEEEecCCeEEEcccCCCC--C-CCCCCCCCHHHH
Q 012358 143 QNVQPMICPSSGVHIVLPDYYSPEG-MGLIVP-KTKDG-RV----VFMLPWLGRTVAGTTDSDT--V-ITLLPEPHEDEI 212 (465)
Q Consensus 143 ~~~~~~i~p~kG~~lv~~~~~~~~~-~~~~~~-~~~dg-r~----~~~~P~~g~~liG~td~~~--~-~~~~~~~~~~~i 212 (465)
|...+-..+++.....+.. +.++.- .+.|| .+ +|.++.+...++|.++... + +.++...+++.+
T Consensus 217 ------IsglrihsI~l~~~e~~v~~~avf~~l~~~~g~ei~~pe~y~rkd~Evyicg~~~~e~~lPedsd~v~~npeki 290 (380)
T KOG2852|consen 217 ------ISGLRIHSITLSPGEKPVGPSAVFCELNTMDGLEICKPEEYARKDREVYICGETDKEHLLPEDSDDVFVNPEKI 290 (380)
T ss_pred ------cceeeeeeEEecCCCCCCCCceEEEEEEeCCCccccCcceeecCCceEEEecCCCccccCCcccccceeCHHHH
Confidence 4444444445533222221 222111 13344 11 3334334456788887653 3 456778889999
Q ss_pred HHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeecCCCeEEEeCCchhchHHHHHHHHHHHHHc
Q 012358 213 QFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRSMAEDAVNAAIKS 292 (465)
Q Consensus 213 ~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~~~gli~v~Ggk~Tt~r~~Ae~v~d~~~~~ 292 (465)
+.|.+.++.+. +.+++..+...-+.+-|.+.+...+-.+.+.-+-.+.. .++-..++-|. .|...|||.++|.....
T Consensus 291 ~~Lk~~a~~v~-s~l~ks~v~~~qacfLP~sn~tg~PvIget~sg~yVaa-gHscWGItnaP-aTG~~mAEllldgeaTS 367 (380)
T KOG2852|consen 291 IELKEMADLVS-SELTKSNVLDAQACFLPTSNITGIPVIGETKSGVYVAA-GHSCWGITNAP-ATGKCMAELLLDGEATS 367 (380)
T ss_pred HHHHHHHHHhh-hhhccchhhhhhhccccccCCCCCceEeecCCceEEee-cccccceecCc-chhHHHHHHHhccceee
Confidence 99999998887 78888999999999999887642222233322333332 22222333344 56789999999987543
No 32
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.98 E-value=6.6e-08 Score=93.54 Aligned_cols=239 Identities=11% Similarity=0.096 Sum_probs=142.0
Q ss_pred CCCceeeCHHHHHHhCC-CccccccccCceEEEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCC-CCeEE
Q 012358 29 LHLSRYYSAQESAELFP-TLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA-SNRII 106 (465)
Q Consensus 29 ~~~~~~l~~~el~~~~P-~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~-g~~v~ 106 (465)
...++.++.+|+++++| ++.-+ ++..|.+-...|.+++..-+.++...|++.|+.|+.+.+|+.+...+. | ..+
T Consensus 114 ~l~h~~l~seEvrk~fP~~~~l~---d~~~G~~n~~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~-~~v 189 (399)
T KOG2820|consen 114 GLAHSVLISEEVRKRFPSNIPLP---DGWQGVVNESGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEG-NHV 189 (399)
T ss_pred hhhhhhhhHHHHHHhCCCCccCC---cchhhcccccccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCC-cee
Confidence 34678899999999999 54432 256666666789999999999999999999999999999998874322 2 456
Q ss_pred EEEEEECCCCcEEEEEccEEEEccCCChHHHhhh-hcCCCCCceeecceeEEEeCCCCCCCCce---------EEeeccC
Q 012358 107 GARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQNVQPMICPSSGVHIVLPDYYSPEGMG---------LIVPKTK 176 (465)
Q Consensus 107 gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~-~g~~~~~~i~p~kG~~lv~~~~~~~~~~~---------~~~~~~~ 176 (465)
+|.++ +|. .+.|+.+|.|+|+|...+++. ++.. +++.|.+= .+-....-..++ ..++...
T Consensus 190 ~V~Tt---~gs--~Y~akkiI~t~GaWi~klL~~~~~~~--~Pv~~i~l---tvcywk~~~~~~~~l~~d~~f~~F~~~~ 259 (399)
T KOG2820|consen 190 SVQTT---DGS--IYHAKKIIFTVGAWINKLLPTSLAIG--FPVAPIQL---TVCYWKTKKNMPVYLFDDDCFYAFPPYP 259 (399)
T ss_pred EEEec---cCC--eeecceEEEEecHHHHhhcCcccccC--CccceeEe---ehhhheeecCCceeecCCCCceeccCCC
Confidence 66665 354 589999999999999999875 3444 23444331 110000001111 2222223
Q ss_pred CCc-EEEEEecCC---eEEE--c-ccCCCCCCCCC--CCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCC
Q 012358 177 DGR-VVFMLPWLG---RTVA--G-TTDSDTVITLL--PEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPS 247 (465)
Q Consensus 177 dgr-~~~~~P~~g---~~li--G-~td~~~~~~~~--~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~ 247 (465)
+.. ..|..|..+ ..=+ + ..+....+++. ..+....++....-.+++. |.++....+.+-.....-++|.
T Consensus 260 ~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~~p~~~s~~~~idl~~~f~~~~~-p~l~~~~p~~t~~C~YT~TpD~- 337 (399)
T KOG2820|consen 260 DTKLIKYALPGYEYPGLMKVDYHEGSKVVPIDPDGPPKRSLPKAIDLMRRFLRTFG-PDLDDRSPINTKMCMYTDTPDA- 337 (399)
T ss_pred CcceEEeccCCCCCcceEEEeecCCCcCCCCCCCCCcccCcchHHHHHHHHHHHhC-ccccCCCcceeeEEEeeCCCCc-
Confidence 332 233344322 1000 1 10111112222 1233445555555556666 8898777777777776666664
Q ss_pred CCCCCCcccceeeeecC--CCeEEEeCCc---hhchHHHHHHHHHHHHHc
Q 012358 248 AKNTESISRDHVVCEDF--PGLVTITGGK---WTTYRSMAEDAVNAAIKS 292 (465)
Q Consensus 248 ~~~~~~~~r~~~i~~~~--~gli~v~Ggk---~Tt~r~~Ae~v~d~~~~~ 292 (465)
+|+|...+ .+++-..||. +--++.++..+++++.+.
T Consensus 338 ---------~FviD~~P~~~Nv~Vg~G~SGHGFK~aP~iGk~lae~~~~~ 378 (399)
T KOG2820|consen 338 ---------NFVIDKHPQYDNVFVGGGGSGHGFKFAPNIGKYLAEMAMGD 378 (399)
T ss_pred ---------CeeeecCCCcccEEEecCCCCcceeecchHHHHHHHHhhhc
Confidence 56555432 3444444442 344577777777777653
No 33
>PLN02697 lycopene epsilon cyclase
Probab=98.21 E-value=0.00018 Score=76.40 Aligned_cols=205 Identities=10% Similarity=0.072 Sum_probs=113.2
Q ss_pred eEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCC
Q 012358 66 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 145 (465)
Q Consensus 66 ~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~ 145 (465)
.++...+...|++.+.+.|+++ ..++|+++..+++ .+..+.+. +|. ++.|+.||.|+|+|+..+........
T Consensus 188 ~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~--~~~vv~~~---dG~--~i~A~lVI~AdG~~S~rl~~~~~~~~ 259 (529)
T PLN02697 188 RVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASD--GLRLVACE---DGR--VIPCRLATVASGAASGRLLQYEVGGP 259 (529)
T ss_pred EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC--cEEEEEEc---CCc--EEECCEEEECCCcChhhhhccccCCC
Confidence 4787888899999999999998 4679999987654 33323332 343 69999999999999965543211111
Q ss_pred CCceeecceeEEEeCCCCCCCCceEEee-c----------cC-CCcEEEEEecC-CeEEE-cccCCCCCCCCCCCCCHHH
Q 012358 146 QPMICPSSGVHIVLPDYYSPEGMGLIVP-K----------TK-DGRVVFMLPWL-GRTVA-GTTDSDTVITLLPEPHEDE 211 (465)
Q Consensus 146 ~~~i~p~kG~~lv~~~~~~~~~~~~~~~-~----------~~-dgr~~~~~P~~-g~~li-G~td~~~~~~~~~~~~~~~ 211 (465)
........|+.+.++.........+++. . .. ..+++|++|.+ +..+| ++.-... +..+.+.
T Consensus 260 ~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~-----~~l~~~~ 334 (529)
T PLN02697 260 RVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASK-----DAMPFDL 334 (529)
T ss_pred CcccEEEEEEEEEecCCCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeeccC-----CCCCHHH
Confidence 1235667788877753222122223321 0 00 12578999997 56777 5531111 1122233
Q ss_pred H-HHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeec-CCCeEEEeCC-chhchHHHHHHHHHH
Q 012358 212 I-QFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-FPGLVTITGG-KWTTYRSMAEDAVNA 288 (465)
Q Consensus 212 i-~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~-~~gli~v~Gg-k~Tt~r~~Ae~v~d~ 288 (465)
+ ++|.+.+.+. .+...+|...=.|+-|+..+ ... .. ...+..+ ..|+++.+-| -+.....-|..+.+.
T Consensus 335 l~~~L~~~l~~~---Gi~~~~i~~~E~g~iPm~g~--~~~---~~-~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ 405 (529)
T PLN02697 335 LKKRLMSRLETM---GIRILKTYEEEWSYIPVGGS--LPN---TE-QKNLAFGAAASMVHPATGYSVVRSLSEAPKYASV 405 (529)
T ss_pred HHHHHHHHHHhC---CCCcceEEEEEeeeecCCCC--Ccc---cC-CCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHH
Confidence 3 3444444432 35566777777777788321 111 11 2233332 2466665544 343344444444444
Q ss_pred HHHc
Q 012358 289 AIKS 292 (465)
Q Consensus 289 ~~~~ 292 (465)
+.+.
T Consensus 406 ia~~ 409 (529)
T PLN02697 406 IARI 409 (529)
T ss_pred HHHH
Confidence 4443
No 34
>PRK06185 hypothetical protein; Provisional
Probab=98.02 E-value=0.00048 Score=71.03 Aligned_cols=147 Identities=19% Similarity=0.122 Sum_probs=87.5
Q ss_pred EchhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCC
Q 012358 67 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 145 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~ 145 (465)
+....+...|.+.+.+. |++++.+++|+++..+++ ++++|.+... +| +.+++|+.||.|.|.|+. +++++|+..
T Consensus 105 v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~--~v~~v~~~~~-~g-~~~i~a~~vI~AdG~~S~-vr~~~gi~~ 179 (407)
T PRK06185 105 MPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGG--RVTGVRARTP-DG-PGEIRADLVVGADGRHSR-VRALAGLEV 179 (407)
T ss_pred eehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCC--EEEEEEEEcC-CC-cEEEEeCEEEECCCCchH-HHHHcCCCc
Confidence 34456777777777664 899999999999988763 6777776531 23 247999999999999986 888888753
Q ss_pred CCceeecceeEEEe--CCCCCCCCceEEeeccCCCcEEEEEecCCeEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhc
Q 012358 146 QPMICPSSGVHIVL--PDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYL 223 (465)
Q Consensus 146 ~~~i~p~kG~~lv~--~~~~~~~~~~~~~~~~~dgr~~~~~P~~g~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~ 223 (465)
+ ..+.++..+.+ +.........+.. ..++..+.++|..+...++-+.... +.........+.+.+.+...+
T Consensus 180 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~llP~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 252 (407)
T PRK06185 180 R--EFGAPMDVLWFRLPREPDDPESLMGR--FGPGQGLIMIDRGDYWQCGYVIPKG---GYAALRAAGLEAFRERVAELA 252 (407)
T ss_pred c--ccCCCceeEEEecCCCCCCCcccceE--ecCCcEEEEEcCCCeEEEEEEecCC---CchhhhhhhHHHHHHHHHHhC
Confidence 2 34444444433 2211111111111 2234456677886544444332211 111233445667777777776
Q ss_pred ccc
Q 012358 224 NVK 226 (465)
Q Consensus 224 ~p~ 226 (465)
|.
T Consensus 253 -p~ 254 (407)
T PRK06185 253 -PE 254 (407)
T ss_pred -cc
Confidence 44
No 35
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.97 E-value=0.00097 Score=65.01 Aligned_cols=186 Identities=15% Similarity=0.148 Sum_probs=105.5
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 146 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~ 146 (465)
++...+...|.+.+.+.|++++.+++|+++..+++ .+ .+.+.+ + ..+++|+.||.|+|.++. +.++++....
T Consensus 88 i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~--~~-~~~~~~---~-~~~~~a~~vv~a~G~~s~-~~~~~~~~~~ 159 (295)
T TIGR02032 88 IDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD--RV-VVIVRG---G-EGTVTAKIVIGADGSRSI-VAKKLGLRKE 159 (295)
T ss_pred EEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC--EE-EEEEcC---c-cEEEEeCEEEECCCcchH-HHHhcCCCCC
Confidence 56778889999999999999999999999987653 32 343332 2 237999999999999974 7776665421
Q ss_pred CceeecceeEEEeCCC---CCCCCceEEeec-cCCCcEEEEEecCC-eEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhh
Q 012358 147 PMICPSSGVHIVLPDY---YSPEGMGLIVPK-TKDGRVVFMLPWLG-RTVAGTTDSDTVITLLPEPHEDEIQFILDAISD 221 (465)
Q Consensus 147 ~~i~p~kG~~lv~~~~---~~~~~~~~~~~~-~~dgr~~~~~P~~g-~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~ 221 (465)
......+....++.+ ..+....+++.. ..++..++++|..+ ...+|.+.... . ...+.+..++...+
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~---~----~~~~~~~~~~~~~~ 231 (295)
T TIGR02032 160 -PRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSA---E----EGEDLKKYLKDFLA 231 (295)
T ss_pred -CcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccC---C----CCCCHHHHHHHHHH
Confidence 111112332233321 111112223221 12345678899964 45666543221 1 11223444444444
Q ss_pred hccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeecC-CCeEEEeCCc
Q 012358 222 YLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF-PGLVTITGGK 274 (465)
Q Consensus 222 ~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~~-~gli~v~Ggk 274 (465)
.+ |.+...++...+.+..|..... .....+-++.... .++++...|.
T Consensus 232 ~~-~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~liGDAA~~~~P~~g~ 279 (295)
T TIGR02032 232 RR-PELKDAETVEVIGAPIPIGRPD-----DKTVRGNVLLVGDAAGHVKPLTGE 279 (295)
T ss_pred hC-cccccCcEEeeeceeeccCCCC-----CccccCCEEEEecccCCCCCccCC
Confidence 55 6677777877788877763221 1222333343333 4566666664
No 36
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.93 E-value=0.0023 Score=65.47 Aligned_cols=203 Identities=18% Similarity=0.138 Sum_probs=110.3
Q ss_pred eeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhh-hcC
Q 012358 65 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQ 143 (465)
Q Consensus 65 g~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~-~g~ 143 (465)
..++...+...+.+.+.+.|++++ .++|+.+..+++ ..+.|.+. +|. +++|+.||.|+|.|+ .+... .+.
T Consensus 80 ~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~--~~~~v~~~---~g~--~~~a~~VI~A~G~~s-~~~~~~~~~ 150 (388)
T TIGR01790 80 GSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGV--ALSTVYCA---GGQ--RIQARLVIDARGFGP-LVQYVRFPL 150 (388)
T ss_pred eEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCC--ceeEEEeC---CCC--EEEeCEEEECCCCch-hcccccCCC
Confidence 357888899999999999999987 567998877633 34556553 243 699999999999997 33221 122
Q ss_pred CCCCceeecceeEEEeCCCCCCCCceEEeecc-C--------CCc--EEEEEecC-CeEEEcccCCCCCCCCCCCCCHHH
Q 012358 144 NVQPMICPSSGVHIVLPDYYSPEGMGLIVPKT-K--------DGR--VVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDE 211 (465)
Q Consensus 144 ~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~-~--------dgr--~~~~~P~~-g~~liG~td~~~~~~~~~~~~~~~ 211 (465)
. ..+....|.++.++.+.......+++... . ... .+|++|.. +..+++.|.... ....+.++
T Consensus 151 ~--~~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~----~~~~~~~~ 224 (388)
T TIGR01790 151 N--VGFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLAD----RPALPRDR 224 (388)
T ss_pred C--ceEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEeccccC----CCCCCHHH
Confidence 2 22445678877776432222233333211 1 123 67889987 567787654221 11223344
Q ss_pred HHH-HHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeecC-CCeEEEeCCc-hhchHHHHHHHHHH
Q 012358 212 IQF-ILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF-PGLVTITGGK-WTTYRSMAEDAVNA 288 (465)
Q Consensus 212 i~~-ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~~-~gli~v~Ggk-~Tt~r~~Ae~v~d~ 288 (465)
.+. |.+.+.. + .+...++...=.|+-|+.... .. .++..+.... .|.++.+.|- +..+..-|..+++.
T Consensus 225 ~~~~l~~~~~~-~--g~~~~~i~~~~~~~iP~~~~~---~~---~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~ 295 (388)
T TIGR01790 225 LRQRILARLNA-Q--GWQIKTIEEEEWGALPVGLPG---PF---LPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAA 295 (388)
T ss_pred HHHHHHHHHHH-c--CCeeeEEEeeeeEEEecccCC---Cc---cCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHH
Confidence 433 3333322 1 233344544445766874321 11 2233444433 4666665553 33344444444444
Q ss_pred HHH
Q 012358 289 AIK 291 (465)
Q Consensus 289 ~~~ 291 (465)
+.+
T Consensus 296 l~~ 298 (388)
T TIGR01790 296 IAQ 298 (388)
T ss_pred HHH
Confidence 443
No 37
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.77 E-value=0.00012 Score=70.82 Aligned_cols=73 Identities=30% Similarity=0.312 Sum_probs=58.4
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC------CCCcEEEEEccEEEEccCCChHHHhhh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN------LSGKEFDTYAKVVVNAAGPFCDSVRKL 140 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~------~tg~~~~i~a~~VVnAaG~wa~~l~~~ 140 (465)
+|+..++..|++.|.++|++++++++|+++..+++| ++.||.+.+. ...+..+|+|+.||+|+|.|+.-...+
T Consensus 101 vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g-~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 101 ADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDP-RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCC-cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 588899999999999999999999999999875544 7888876531 111335799999999999999755443
No 38
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.68 E-value=0.00015 Score=74.27 Aligned_cols=71 Identities=21% Similarity=0.234 Sum_probs=58.5
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC-hHHHhhhhc
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKLAD 142 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w-a~~l~~~~g 142 (465)
+-+.||..+|.+.++++|++++++++|+++..+++ ++++|.+.+ +...++.||.||+|+|+| +..+.+..+
T Consensus 260 v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~--~v~~V~t~~---g~~~~l~AD~vVLAaGaw~S~gL~a~l~ 331 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGN--RVTRIHTRN---HRDIPLRADHFVLASGSFFSNGLVAEFD 331 (419)
T ss_pred CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCC--eEEEEEecC---CccceEECCEEEEccCCCcCHHHHhhcC
Confidence 55678999999999999999999999999987763 778777643 323479999999999999 998876553
No 39
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.61 E-value=0.009 Score=61.02 Aligned_cols=197 Identities=18% Similarity=0.270 Sum_probs=113.1
Q ss_pred eEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCC
Q 012358 66 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 145 (465)
Q Consensus 66 ~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~ 145 (465)
.++-..+-..+.+.+.+.| .++.+++|++|...++ .+.|++. +|. +|+|+.||.|.|+.+. .. ..
T Consensus 83 ~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~---~~~v~~~---~g~--~i~a~~VvDa~g~~~~-~~----~~- 147 (374)
T PF05834_consen 83 MIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD---GVLVVLA---DGR--TIRARVVVDARGPSSP-KA----RP- 147 (374)
T ss_pred EEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc---eEEEEEC---CCC--EEEeeEEEECCCcccc-cc----cc-
Confidence 4677778888888888444 5566789999987653 2345554 354 7999999999996654 11 11
Q ss_pred CCceeecceeEEEeCCC-CCCCCceEEe----ecc-CCCcEEEEEecC-CeEEEcccCCCCCCCCCCCCCHHHHH-HHHH
Q 012358 146 QPMICPSSGVHIVLPDY-YSPEGMGLIV----PKT-KDGRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQ-FILD 217 (465)
Q Consensus 146 ~~~i~p~kG~~lv~~~~-~~~~~~~~~~----~~~-~dgr~~~~~P~~-g~~liG~td~~~~~~~~~~~~~~~i~-~ll~ 217 (465)
.......|..+-++.+ +.+. ...++ ++. ..-+++|++|.. +..+|..|.-.. .+..+.++.+ .|.+
T Consensus 148 -~~~Q~f~G~~v~~~~~~f~~~-~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~----~~~~~~~~~~~~l~~ 221 (374)
T PF05834_consen 148 -LGLQHFYGWEVETDEPVFDPD-TATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSP----RPALPEEELKARLRR 221 (374)
T ss_pred -cccceeEEEEEeccCCCCCCC-ceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcC----CCCCCHHHHHHHHHH
Confidence 1133456777777655 2322 22222 111 123678999997 678887664321 1223444443 3444
Q ss_pred HHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeec-CCCeEEEeCC-chhchHHHHHHHHHHHH
Q 012358 218 AISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-FPGLVTITGG-KWTTYRSMAEDAVNAAI 290 (465)
Q Consensus 218 ~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~-~~gli~v~Gg-k~Tt~r~~Ae~v~d~~~ 290 (465)
.+.+ + +++..+|.+.-.|+-|++..+. ....... .+..+ ..|++..+-| .+......|..+++.+.
T Consensus 222 ~l~~-~--g~~~~~i~~~E~G~IPm~~~~~---~~~~~~~-v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~ 289 (374)
T PF05834_consen 222 YLER-L--GIDDYEILEEERGVIPMTTGGF---PPRFGQR-VIRIGTAGGMVKPSTGYSFARIQRQADAIADALA 289 (374)
T ss_pred HHHH-c--CCCceeEEEeecceeecccCCC---ccccCCC-eeeEEccccCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 4444 3 5677889999999999953321 1111222 34333 3466655555 23334445555555554
No 40
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.59 E-value=0.031 Score=57.57 Aligned_cols=239 Identities=18% Similarity=0.174 Sum_probs=124.3
Q ss_pred eeeCHHHHHHhCCCccccccccCceEEEEe-c-----------Cee-EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEc
Q 012358 33 RYYSAQESAELFPTLAMKAKDRSLKGAVVY-Y-----------DGQ-MNDSRLNVGLALTAALAGAAVLNHAEVISLIKD 99 (465)
Q Consensus 33 ~~l~~~el~~~~P~l~~~~~~~~l~ga~~~-~-----------dg~-vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~ 99 (465)
..+++..+.+..|....+ -...+.+...+ + .+. ++-..+...|++.|.+.|++++..+.|+++..+
T Consensus 46 ~~~~~~~l~~l~~~~~~~-i~~~v~~~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~ 124 (396)
T COG0644 46 GGLSPRALEELIPDFDEE-IERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRE 124 (396)
T ss_pred ceechhhHHHhCCCcchh-hheeeeeeEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEe
Confidence 468888888888877520 00134444332 2 144 567789999999999999999999999999988
Q ss_pred CCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEE-ee-ccCC
Q 012358 100 EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLI-VP-KTKD 177 (465)
Q Consensus 100 ~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~-~~-~~~d 177 (465)
+++ ++.+... +. .+++|++||.|.|+-+ .+.+.+|.....+-...-++.-+...+.......++ .+ ....
T Consensus 125 ~~~--~~~~~~~----~~-~e~~a~~vI~AdG~~s-~l~~~lg~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 196 (396)
T COG0644 125 DDG--VVVGVRA----GD-DEVRAKVVIDADGVNS-ALARKLGLKDRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGP 196 (396)
T ss_pred CCc--EEEEEEc----CC-EEEEcCEEEECCCcch-HHHHHhCCCCCChhheeEEeEEEEecCCCCceEEEEecCCccCC
Confidence 753 3323222 32 5899999999999975 455556554111111112333333222111112222 21 1222
Q ss_pred CcEEEEEecCC-eEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhc-cccCCcCCeeEeeeeeeecccCCCCCCCCCcc
Q 012358 178 GRVVFMLPWLG-RTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYL-NVKVRRTDVLSAWSGIRPLAMDPSAKNTESIS 255 (465)
Q Consensus 178 gr~~~~~P~~g-~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~-~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~ 255 (465)
+...++.|.++ ..-+|....... ....+. .+++.+-..+.. .+.+...++...-+|.-|...-. ... +.
T Consensus 197 ~Gy~wifP~~~~~~~VG~g~~~~~--~~~~~~---~~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~---~~~-~~ 267 (396)
T COG0644 197 GGYGWIFPLGDGHANVGIGVLLDD--PSLSPF---LELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPA---SRP-LV 267 (396)
T ss_pred CceEEEEECCCceEEEEEEEecCC--cCCCch---HHHHHHHHhCcccchhccCCceEEEeeeecccCCcC---CCc-cc
Confidence 34567889974 455665432211 111111 122222111111 01122246667777777754211 111 33
Q ss_pred cceeeeec-CCCeEEEeCCc-----hhchHHHHHHHHHHH
Q 012358 256 RDHVVCED-FPGLVTITGGK-----WTTYRSMAEDAVNAA 289 (465)
Q Consensus 256 r~~~i~~~-~~gli~v~Ggk-----~Tt~r~~Ae~v~d~~ 289 (465)
.+-.+... ..|+++...|. +.|+...|+-+.+..
T Consensus 268 ~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~ 307 (396)
T COG0644 268 GDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEAL 307 (396)
T ss_pred cCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHH
Confidence 44344433 35766665554 455555555555544
No 41
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.58 E-value=0.00031 Score=76.01 Aligned_cols=72 Identities=26% Similarity=0.302 Sum_probs=59.9
Q ss_pred eeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEc-cEEEEccCCChHHHhhh
Q 012358 65 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDSVRKL 140 (465)
Q Consensus 65 g~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a-~~VVnAaG~wa~~l~~~ 140 (465)
+.+++..++..|.+.+.++|++|+++++|+++..++ | +|+||.+.+ ++...+|+| +.||+|+|.|+..+..+
T Consensus 212 ~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~-g-~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 212 HLVNGNALVARLLKSAEDLGVRIWESAPARELLRED-G-RVAGAVVET--PGGLQEIRARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-C-EEEEEEEEE--CCcEEEEEeCCEEEEcCCCcccCHHHH
Confidence 346788899999999999999999999999998764 5 899998865 344457899 99999999999766443
No 42
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.57 E-value=0.012 Score=60.35 Aligned_cols=73 Identities=22% Similarity=0.219 Sum_probs=52.4
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---CCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
++-..+-..|++.|.+.|++++.. .|+++..+++ . +.|.+.+. .+|+..+++|+.||.|.|.++ .+++.+|.
T Consensus 89 ~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~--~-~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S-~v~r~lg~ 163 (388)
T TIGR02023 89 VRREVFDSYLRERAQKAGAELIHG-LFLKLERDRD--G-VTLTYRTPKKGAGGEKGSVEADVVIGADGANS-PVAKELGL 163 (388)
T ss_pred eeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCC--e-EEEEEEeccccCCCcceEEEeCEEEECCCCCc-HHHHHcCC
Confidence 455567778888899999999764 6999977653 3 44655431 123345799999999999998 46677765
Q ss_pred C
Q 012358 144 N 144 (465)
Q Consensus 144 ~ 144 (465)
.
T Consensus 164 ~ 164 (388)
T TIGR02023 164 P 164 (388)
T ss_pred C
Confidence 4
No 43
>PLN02463 lycopene beta cyclase
Probab=97.37 E-value=0.019 Score=59.99 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=48.7
Q ss_pred eeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 65 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 65 g~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+.++...+...+.+.+.+.|++++ .++|+++...++ . +.|++. +|. +++|+.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~--~-~~V~~~---dG~--~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEES--K-SLVVCD---DGV--KIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCC--e-EEEEEC---CCC--EEEcCEEEECcCCCcC
Confidence 457888888899999988999987 478999987653 2 456554 354 6999999999999764
No 44
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.31 E-value=0.00022 Score=81.63 Aligned_cols=64 Identities=17% Similarity=0.073 Sum_probs=59.2
Q ss_pred CCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHHcCCCHHHH
Q 012358 371 GKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRR 437 (465)
Q Consensus 371 ~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~lgw~~~~~ 437 (465)
...+|.||.+|.++|+.|++. ++.+++. |+|.||+|| +.|||..|...++++|++..|-+.+++
T Consensus 504 ~~~~~~~edvt~~~i~~a~~~-g~~~~~~-~K~~tr~Gm-G~cQGr~c~~~~~~~~a~~~~~~~~~~ 567 (985)
T TIGR01372 504 KAFVDYQNDVTAKDVELAVRE-GFESVEH-LKRYTTLGM-ATDQGKTSNVNGLAIMAEALGKSIPEV 567 (985)
T ss_pred ccccCccccCcHHHHHHHHHh-cCCCHHH-HHHhhcCCC-cccCchhhHHHHHHHHHHHHCcChHhc
Confidence 468899999999999999994 8899877 799999999 999999999999999999999988876
No 45
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.29 E-value=0.058 Score=60.92 Aligned_cols=56 Identities=5% Similarity=0.204 Sum_probs=48.9
Q ss_pred CCCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHHcC
Q 012358 370 LGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHK 431 (465)
Q Consensus 370 ~~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~lg 431 (465)
....||.|+.+++++|+.||++ .+.++.+ |+++|+.|. + |.+ |.+.|.+++.++++
T Consensus 420 d~a~iC~C~~Vt~~~i~~ai~~-g~~~~~~-v~~~t~agt-~-Cg~--C~~~v~~~l~~~~~ 475 (847)
T PRK14989 420 DSAQICSCFDVTKGDLIAAINK-GCHTVAA-LKAETKAGT-G-CGG--CIPLVTQVLNAELA 475 (847)
T ss_pred CCCEEEEeecccHHHHHHHHHh-CCCCHHH-HHhhCcCCC-C-CcC--HHHHHHHHHHHHHH
Confidence 3568999999999999999985 8989888 799999998 4 876 99999999887654
No 46
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.28 E-value=0.00067 Score=71.97 Aligned_cols=70 Identities=21% Similarity=0.407 Sum_probs=56.2
Q ss_pred eEEEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 57 KGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 57 ~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.+++++++|.. ..++.+|.+.++++|++|+.+++|++|..++ + ++++|++.+ |+ ++.|+.||+|+|+|..
T Consensus 218 ~~g~~~~~gG~--~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~-~~~gv~~~~---g~--~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 218 YGGINYPKGGV--GQIAESLVKGLEKHGGQIRYRARVTKIILEN-G-KAVGVKLAD---GE--KIYAKRIVSNATRWDT 287 (493)
T ss_pred cceEecCCChH--HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-C-cEEEEEeCC---CC--EEEcCEEEECCChHHH
Confidence 34556664433 4689999999999999999999999998875 4 788888753 54 6899999999999953
No 47
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.25 E-value=0.0056 Score=62.79 Aligned_cols=70 Identities=26% Similarity=0.332 Sum_probs=55.9
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 145 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~ 145 (465)
++...+...|.+.+.+.|++++.+++|+++..+++ . +.|++. +|+ ++.|+.||.|.|.|+ .+++.+|+..
T Consensus 110 v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~--~-v~v~~~---~g~--~~~a~~vV~AdG~~S-~vr~~~g~~~ 179 (392)
T PRK08773 110 VENDLLVDRLWAALHAAGVQLHCPARVVALEQDAD--R-VRLRLD---DGR--RLEAALAIAADGAAS-TLRELAGLPV 179 (392)
T ss_pred EEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCC--e-EEEEEC---CCC--EEEeCEEEEecCCCc-hHHHhhcCCc
Confidence 56677888999999999999999999999987653 3 335443 354 699999999999999 6888887653
No 48
>PF04324 Fer2_BFD: BFD-like [2Fe-2S] binding domain; InterPro: IPR007419 The two Fe ions are each coordinated by two conserved cysteine residues. This domain occurs alone in small proteins such as bacterioferritin-associated ferredoxin (BFD, P13655 from SWISSPROT). The function of BFD is not known, but it may be a general redox and/or regulatory component involved in the iron storage or mobilisation functions of bacterioferritin in bacteria []. This domain is also found in nitrate reductase proteins in association with the nitrite and sulphite reductase 4Fe-4S domain (IPR006067 from INTERPRO), nitrite/sulphite reductase ferredoxin-like half domain (IPR005117 from INTERPRO) and pyridine nucleotide-disulphide oxidoreductase (IPR001327 from INTERPRO). It is also found in NifU nitrogen fixation proteins, in association with NifU-like N-terminal domain (IPR002871 from INTERPRO) and C-terminal domain (IPR001075 from INTERPRO).; PDB: 2HU9_A.
Probab=97.24 E-value=0.00022 Score=51.61 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=29.7
Q ss_pred ccccCCCccHHHHHHHHHh-cccCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHH
Q 012358 373 RLAHGYPFLEAEVAYCARN-EYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATE 429 (465)
Q Consensus 373 ~v~~~~~~~~aEi~~ai~~-E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~ 429 (465)
+||.|+.+++.||+.+++. +.+.++++ |+++|+.|. .|. .|.+.+.++++++
T Consensus 2 ~VC~C~~vt~~~I~~ai~~~~g~~t~~~-i~~~t~~g~--~Cg--~C~~~v~~ll~e~ 54 (55)
T PF04324_consen 2 IVCRCNGVTEGEIRDAIREDNGARTLEE-IKRATGAGT--GCG--SCVPEVKDLLAEE 54 (55)
T ss_dssp EEETTTTEEHHHHHHHHHH-H-----HH-HHHHHTTSS---TH---------------
T ss_pred EEeecCCcCHHHHHHHHHhhcccchHHH-HHHHcCCCC--CCC--Ccccccccccccc
Confidence 6899999999999999986 89999988 699999986 466 4899888888775
No 49
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.11 E-value=0.094 Score=54.05 Aligned_cols=75 Identities=25% Similarity=0.182 Sum_probs=51.7
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcC-CCCeEEEEEEEECC----CCcEEEEEccEEEEccCCChHHHhhhh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNL----SGKEFDTYAKVVVNAAGPFCDSVRKLA 141 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~-~g~~v~gV~~~d~~----tg~~~~i~a~~VVnAaG~wa~~l~~~~ 141 (465)
++-..+-..|++.|.++|++++..+ ++++.... .+ ..++|++.+.. +|+..+|+|+.||.|.|+.+ .+++.+
T Consensus 90 v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~-~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S-~v~~~~ 166 (398)
T TIGR02028 90 LRREVLDSFLRRRAADAGATLINGL-VTKLSLPADAD-DPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS-RVAKEI 166 (398)
T ss_pred eeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCC-ceEEEEEeeccccccCCCccEEEeCEEEECCCcch-HHHHHh
Confidence 4555666778888999999998775 77775321 12 34566654211 14445799999999999998 577777
Q ss_pred cCC
Q 012358 142 DQN 144 (465)
Q Consensus 142 g~~ 144 (465)
|..
T Consensus 167 g~~ 169 (398)
T TIGR02028 167 DAG 169 (398)
T ss_pred CCC
Confidence 654
No 50
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.10 E-value=0.0081 Score=61.37 Aligned_cols=70 Identities=20% Similarity=0.147 Sum_probs=54.3
Q ss_pred eEchhHHHHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 66 QMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 66 ~vdp~rl~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
.++...+...|.+.+.+.| ++++ +++|+++...++ . +.|++.+ |. +++|+.||.|.|.|+. +++.++..
T Consensus 107 ~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~--~-~~v~~~~---g~--~~~a~~vI~adG~~S~-vr~~~~~~ 176 (388)
T PRK07608 107 IVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPD--A-ATLTLAD---GQ--VLRADLVVGADGAHSW-VRSQAGIK 176 (388)
T ss_pred EEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC--e-EEEEECC---CC--EEEeeEEEEeCCCCch-HHHhcCCC
Confidence 3677789999999999888 9988 788999987653 3 3455532 43 6999999999999986 77777765
Q ss_pred C
Q 012358 145 V 145 (465)
Q Consensus 145 ~ 145 (465)
.
T Consensus 177 ~ 177 (388)
T PRK07608 177 A 177 (388)
T ss_pred c
Confidence 3
No 51
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.03 E-value=0.0027 Score=66.26 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=57.0
Q ss_pred CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 64 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 64 dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
++..+...++..|.+.+.+.|++|+.+++|+++..+++| ++++|.+.+. .++...+.++.||+|+|.|+.
T Consensus 124 ~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g-~v~Gv~~~~~-~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 124 GGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQG-TVVGVVVKGK-GKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCC-cEEEEEEEeC-CCeEEEEecceEEEecCCCCC
Confidence 344566789999999999999999999999999986545 7899988752 344446899999999999986
No 52
>PRK12839 hypothetical protein; Provisional
Probab=97.02 E-value=0.0032 Score=67.96 Aligned_cols=68 Identities=26% Similarity=0.346 Sum_probs=55.5
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEE-EccEEEEccCCChHHH
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDT-YAKVVVNAAGPFCDSV 137 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i-~a~~VVnAaG~wa~~l 137 (465)
+++..++..|++.|.+.|++|+.+++|+++..+++| +|+||.+.+. +|+ ..+ .++.||+|||.|+...
T Consensus 211 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g-~V~GV~~~~~-~g~-~~i~aak~VVLAtGGf~~n~ 279 (572)
T PRK12839 211 VNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNG-RVTGVRVQGP-DGA-VTVEATRGVVLATGGFPNDV 279 (572)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCC-cEEEEEEEeC-CCc-EEEEeCCEEEEcCCCcccCH
Confidence 578899999999999999999999999999875445 8999987653 343 344 4589999999998754
No 53
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.00 E-value=0.012 Score=60.47 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=55.9
Q ss_pred eEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 66 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 66 ~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
.++...+...|.+.+.+.|++++.+++|+++..+++ . +.|++. +|+ ++.||.||.|.|.|+. +++.+|..
T Consensus 107 ~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~-v~v~~~---~g~--~~~ad~vI~AdG~~S~-vr~~~g~~ 176 (403)
T PRK07333 107 MVENRVLINALRKRAEALGIDLREATSVTDFETRDE--G-VTVTLS---DGS--VLEARLLVAADGARSK-LRELAGIK 176 (403)
T ss_pred EeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC--E-EEEEEC---CCC--EEEeCEEEEcCCCChH-HHHHcCCC
Confidence 367778999999999999999999999999987653 3 335543 354 6999999999999975 77777765
No 54
>PRK07121 hypothetical protein; Validated
Probab=96.95 E-value=0.0039 Score=66.14 Aligned_cols=65 Identities=32% Similarity=0.360 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEc-cEEEEccCCChH
Q 012358 68 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCD 135 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a-~~VVnAaG~wa~ 135 (465)
+...++..|.+.+.+.|++|+.+++|+++..+++| +++||.+.+ +++...|+| +.||+|+|.|+.
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g-~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDG-RVVGVEARR--YGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCC-CEEEEEEEe--CCcEEEEEeCCEEEECCCCcCc
Confidence 45678889999999999999999999999886545 899998864 455567999 999999998874
No 55
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.87 E-value=0.0052 Score=63.56 Aligned_cols=66 Identities=29% Similarity=0.341 Sum_probs=54.7
Q ss_pred chhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 68 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
....++..|.+.+.++|++|+.+++|+++..++ + +|+||.+.+..+|+...|+|+.||.|+|-++.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~-g-~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITED-G-RVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEET-T-EEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeC-C-ceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 345688999999999999999999999999976 5 99999998656788788999999999999986
No 56
>PRK08244 hypothetical protein; Provisional
Probab=96.72 E-value=0.1 Score=55.41 Aligned_cols=71 Identities=24% Similarity=0.227 Sum_probs=52.0
Q ss_pred chhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 68 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
.-..+-..|.+.+.+.|++++.+++|+++..+++ .+ .|.+.+. +| ..+++|+.||.|.|.+| .+++.+|+.
T Consensus 98 ~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v-~v~~~~~-~g-~~~i~a~~vVgADG~~S-~vR~~lgi~ 168 (493)
T PRK08244 98 PQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGD--GV-EVVVRGP-DG-LRTLTSSYVVGADGAGS-IVRKQAGIA 168 (493)
T ss_pred cHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCC--eE-EEEEEeC-Cc-cEEEEeCEEEECCCCCh-HHHHhcCCC
Confidence 3345666677777888999999999999987664 33 3555431 23 24799999999999998 477777754
No 57
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.69 E-value=0.022 Score=58.05 Aligned_cols=69 Identities=20% Similarity=0.282 Sum_probs=54.6
Q ss_pred EchhHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 67 MNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
++...+...|.+.+.+ .|++++.+++|+++..+++ . +.|.+. +|+ ++.||.||.|.|.|+. ++++++..
T Consensus 102 i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~--~-~~v~~~---~g~--~~~ad~vV~AdG~~S~-vr~~l~~~ 171 (382)
T TIGR01984 102 VELADLGQALLSRLALLTNIQLYCPARYKEIIRNQD--Y-VRVTLD---NGQ--QLRAKLLIAADGANSK-VRELLSIP 171 (382)
T ss_pred EEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCC--e-EEEEEC---CCC--EEEeeEEEEecCCChH-HHHHcCCC
Confidence 6777899999999888 4999999999999987653 3 335443 354 6999999999999975 77877765
No 58
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.65 E-value=0.25 Score=51.83 Aligned_cols=76 Identities=18% Similarity=0.093 Sum_probs=50.9
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC----CCCcEEEEEccEEEEccCCChHHHhhhhc
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN----LSGKEFDTYAKVVVNAAGPFCDSVRKLAD 142 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~----~tg~~~~i~a~~VVnAaG~wa~~l~~~~g 142 (465)
++=..+-..|++.|.+.|+++++. .|+++....+++..+.|++.+. .+|+..+++|+.||-|.|+++ .+++.+|
T Consensus 129 v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S-~vrr~lg 206 (450)
T PLN00093 129 VRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANS-RVAKDID 206 (450)
T ss_pred ecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcch-HHHHHhC
Confidence 455567778888899999999865 5888764321102344555431 014445799999999999987 6667666
Q ss_pred CC
Q 012358 143 QN 144 (465)
Q Consensus 143 ~~ 144 (465)
..
T Consensus 207 ~~ 208 (450)
T PLN00093 207 AG 208 (450)
T ss_pred CC
Confidence 54
No 59
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.63 E-value=0.0089 Score=64.55 Aligned_cols=67 Identities=19% Similarity=0.150 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
...++..|.+.+.+.|+++++++.++.+..+++| +|.||...+..+|+...|.|+.||+|||-++..
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDG-AVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCC-eEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 3568888998888999999999999999986445 899998866556777789999999999998753
No 60
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.58 E-value=0.078 Score=52.79 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=55.4
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
++-..+...|.+.+.+.|+++...++|+++..+.+ .+. +.+.+..+|+..+|+||.||-|-|.+| .+++.++..
T Consensus 108 ~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~--~~~-~~~~~~~~g~~~~i~adlvVgADG~~S-~vR~~l~~~ 181 (356)
T PF01494_consen 108 IDRPELDRALREEAEERGVDIRFGTRVVSIEQDDD--GVT-VVVRDGEDGEEETIEADLVVGADGAHS-KVRKQLGID 181 (356)
T ss_dssp EEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETT--EEE-EEEEETCTCEEEEEEESEEEE-SGTT--HHHHHTTGG
T ss_pred hhHHHHHHhhhhhhhhhhhhheeeeeccccccccc--ccc-cccccccCCceeEEEEeeeecccCccc-chhhhcccc
Confidence 34456778888889999999999999999988764 433 455565567767899999999999997 555666554
No 61
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.55 E-value=0.0098 Score=65.27 Aligned_cols=64 Identities=27% Similarity=0.301 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
.+...|.+.+.+.|++|++++.|+++..++ | ++.||.+.+..+|+...|.|+.||+|||.|+..
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g-~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDG-K-RCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEEC-C-EEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 466678888899999999999999999865 5 899999876556776678999999999988743
No 62
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.54 E-value=0.011 Score=62.10 Aligned_cols=64 Identities=33% Similarity=0.332 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
...++..|.+.+.+.|++++.+++|+++..++ | +|++|.+.+ .+++...|+|+.||+|+|.|..
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~-g-~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALELDD-G-RFVGARAGS-AAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-C-eEEEEEEEc-cCCceEEEECCEEEECCCCCCC
Confidence 45688889999999999999999999998865 4 889988742 2455567999999999998753
No 63
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.51 E-value=0.011 Score=64.23 Aligned_cols=68 Identities=28% Similarity=0.183 Sum_probs=53.7
Q ss_pred chhHHHHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 68 NDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
++..+...|.+.+.++| ++++++++|+++..++ | +++||...+..+|+...+.|+.||+|+|.|+...
T Consensus 130 ~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~ 198 (608)
T PRK06854 130 NGESYKPIVAEAAKKALGDNVLNRVFITDLLVDD-N-RIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIY 198 (608)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC-C-EEEEEEEEEccCCcEEEEECCEEEECCCchhhcc
Confidence 55677778888888876 9999999999998765 4 8889876443356555799999999999998643
No 64
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.47 E-value=0.014 Score=62.21 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=56.3
Q ss_pred CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 64 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 64 dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
++...+..++..|.+.+.+.|++++.+++|+.+..++ | +|++|.+... +++..+|+|+.||+|+|.|+..
T Consensus 184 ~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~-g-~V~Gv~~~~~-~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 184 DGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKD-G-KVTGVKVKIN-GKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred CCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecC-C-EEEEEEEEeC-CCeEEEEecCeEEEeCCCcccC
Confidence 4555566788899999999999999999999998754 5 8889887642 3445679999999999988653
No 65
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=96.47 E-value=0.0083 Score=63.76 Aligned_cols=68 Identities=24% Similarity=0.234 Sum_probs=53.6
Q ss_pred EEEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 58 GAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 58 ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
++++++.+.. ..++.+|.+.+.++|++|+.+++|++|..++ + ++++|++.+ |+ ++.||.||+|++++.
T Consensus 209 ~g~~~~~gG~--~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~-~~~~V~~~~---g~--~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 209 WGVWFPRGGT--GALVAAMAKLAEDLGGELRLNAEVIRIETEG-G-RATAVHLAD---GE--RLDADAVVSNADLHH 276 (502)
T ss_pred ceEEEcCCCH--HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-C-EEEEEEECC---CC--EEECCEEEECCcHHH
Confidence 4555554332 5789999999999999999999999998865 3 778888753 54 689999999999753
No 66
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.45 E-value=0.013 Score=63.56 Aligned_cols=66 Identities=29% Similarity=0.315 Sum_probs=54.9
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEc-cEEEEccCCChHH
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDS 136 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a-~~VVnAaG~wa~~ 136 (465)
.++..++.+|.+.+.++|++++.+++|+.+..++ | +|.||.+.+ .|+...|.| +.||+|+|.++..
T Consensus 218 ~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~-g-~V~GV~~~~--~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 218 VMGNALIGRLLYSLRARGVRILTQTDVESLETDH-G-RVIGATVVQ--GGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred cccHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-C-EEEEEEEec--CCeEEEEEccceEEECCCCcccC
Confidence 4677899999999999999999999999998754 4 899998764 455557886 7899999999753
No 67
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.43 E-value=0.056 Score=54.90 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=53.9
Q ss_pred EchhHHHHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 67 MNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
++-..+...|.+.+.+.| ++++.+++|+++..+++ .+ .|.+. +|+ ++.||.||.|.|.++. +++.++.+
T Consensus 103 i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~--~~-~v~~~---~g~--~~~~~~vi~adG~~S~-vr~~l~~~ 172 (385)
T TIGR01988 103 VENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD--HV-ELTLD---DGQ--QLRARLLVGADGANSK-VRQLAGIP 172 (385)
T ss_pred EEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC--ee-EEEEC---CCC--EEEeeEEEEeCCCCCH-HHHHcCCC
Confidence 566678899999999988 99999999999987653 33 35443 354 6999999999999984 77777654
No 68
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.43 E-value=0.015 Score=63.13 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
..++..|.+.+.+.|+++++++.|+++..+++| +|.||...+..+|+...|.|+.||+|||-++..
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDG-AVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCC-EEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 457888888888899999999999999885445 899998865456776689999999999998753
No 69
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.42 E-value=0.015 Score=63.31 Aligned_cols=66 Identities=17% Similarity=0.049 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
...++..|.+.+.+.|++++.++.|+++..+++| +|.||...+..+|+...|.|+.||+|||-++.
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDG-ECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCC-EEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 3468888999999999999999999999873335 89999876544677678999999999998864
No 70
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.41 E-value=0.015 Score=63.22 Aligned_cols=66 Identities=20% Similarity=0.112 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
..++..|.+.+.+.|++|++++.|+++..+++| +|.||.+.+..+|+...|.|+.||+|||-+...
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGG-VCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCC-EEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 357888888898999999999999999886545 899998765446766789999999999998754
No 71
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.38 E-value=0.05 Score=56.03 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=54.0
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 145 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~ 145 (465)
++...+...|.+.+.+.|++++.+++|+++..+++ . +.|.+. +|+ ++.||.||.|.|.|| .+++.++.+.
T Consensus 109 i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~-v~v~~~---~g~--~~~a~~vVgAdG~~S-~vR~~lg~~~ 178 (405)
T PRK05714 109 VENRVVQDALLERLHDSDIGLLANARLEQMRRSGD--D-WLLTLA---DGR--QLRAPLVVAADGANS-AVRRLAGCAT 178 (405)
T ss_pred EEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCC--e-EEEEEC---CCC--EEEeCEEEEecCCCc-hhHHhcCCCc
Confidence 44556777888888888999999999999987654 3 335543 354 699999999999999 6888887653
No 72
>PRK06847 hypothetical protein; Provisional
Probab=96.36 E-value=0.15 Score=51.77 Aligned_cols=70 Identities=21% Similarity=0.194 Sum_probs=52.9
Q ss_pred eEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 66 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 66 ~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
.++...+...|.+.+.+.|++++.+++|+++..+++ . +.|.+. +|+ ++.||.||.|+|.|+..-..+.+.
T Consensus 103 ~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~-~~v~~~---~g~--~~~ad~vI~AdG~~s~~r~~l~~~ 172 (375)
T PRK06847 103 GIMRPALARILADAARAAGADVRLGTTVTAIEQDDD--G-VTVTFS---DGT--TGRYDLVVGADGLYSKVRSLVFPD 172 (375)
T ss_pred cCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC--E-EEEEEc---CCC--EEEcCEEEECcCCCcchhhHhcCC
Confidence 456677888898888889999999999999987653 3 345543 354 689999999999998654444343
No 73
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=96.32 E-value=0.019 Score=62.00 Aligned_cols=66 Identities=18% Similarity=0.120 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
...++..|.+.+.+.|++|++++.|+++..++ | +|.||...+..+|+...|.|+.||+|||-++..
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-g-~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMED-G-ECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC-C-EEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 34588889888999999999999999999764 5 899998765446776789999999999998754
No 74
>PLN02612 phytoene desaturase
Probab=96.26 E-value=0.18 Score=54.42 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
|.+++..+++...+.|++|+.+++|++|..+++| .+++|++. +|+ ++.||.||.|+.++
T Consensus 307 ~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g-~v~~v~~~---~G~--~~~ad~VI~a~p~~ 365 (567)
T PLN02612 307 PERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDG-TVKHFLLT---NGS--VVEGDVYVSATPVD 365 (567)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCC-cEEEEEEC---CCc--EEECCEEEECCCHH
Confidence 3678889998888899999999999999886554 56677764 364 68999999998763
No 75
>PRK06126 hypothetical protein; Provisional
Probab=96.24 E-value=0.2 Score=53.88 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 70 SRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 70 ~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
..+...|.+.+.+. |++|+.+++|+++..+++ .+. +.+.+..+|+..+++||.||.|.|.+|. +++.+|+.
T Consensus 126 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~-VR~~lgi~ 197 (545)
T PRK06126 126 KYLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD--GVT-ATVEDLDGGESLTIRADYLVGCDGARSA-VRRSLGIS 197 (545)
T ss_pred HHHHHHHHHHHHhCCCceEEeccEEEEEEECCC--eEE-EEEEECCCCcEEEEEEEEEEecCCcchH-HHHhcCCc
Confidence 34556666666654 899999999999988764 444 5565544676668999999999999984 88887764
No 76
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.24 E-value=0.022 Score=62.21 Aligned_cols=66 Identities=17% Similarity=0.066 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
..++..|.+.+.+.|++|+.++.++.+..+++| +|.||.+.+..+|+...|.|+.||+|||-+...
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDG-ACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCC-EEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 457888998898999999999999998876445 899998866446776789999999999998753
No 77
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.21 E-value=0.023 Score=61.75 Aligned_cols=66 Identities=24% Similarity=0.156 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCC--CCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~--g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
.+...+...+.+.++++++++.|+++..+++ | +|+||.+.+..+|+...|.|+.||+|||.|+...
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~G-rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly 194 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPN-RIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVY 194 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCC-eEEEEEEEEeCCCcEEEEECCEEEECCCcccccc
Confidence 3334444455666789999999999998542 4 8999988665567767899999999999998644
No 78
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.20 E-value=0.024 Score=61.31 Aligned_cols=65 Identities=25% Similarity=0.223 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
...+...|.+.+.+.|+++++++.|+++..++ | +|.||.+.+..+|+...|.|+.||+|+|.++.
T Consensus 128 G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 128 GHALLHTLYEQCLKLGVSFFNEYFALDLIHDD-G-RVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-C-EEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 34577788888888999999999999998765 5 89998876544565557999999999999864
No 79
>PRK06184 hypothetical protein; Provisional
Probab=96.20 E-value=0.095 Score=55.72 Aligned_cols=69 Identities=25% Similarity=0.165 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
.++...|.+.+.+.|++++.+++|+++..+++ .+ .+.+.+. ++..+++||+||.|.|.+| .+++.+|+.
T Consensus 109 ~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~--~v-~v~~~~~--~~~~~i~a~~vVgADG~~S-~vR~~lgi~ 177 (502)
T PRK06184 109 WRTERILRERLAELGHRVEFGCELVGFEQDAD--GV-TARVAGP--AGEETVRARYLVGADGGRS-FVRKALGIG 177 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCC--cE-EEEEEeC--CCeEEEEeCEEEECCCCch-HHHHhCCCC
Confidence 35666777778888999999999999987664 33 3444321 2223799999999999998 477877765
No 80
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.20 E-value=0.02 Score=62.07 Aligned_cols=68 Identities=26% Similarity=0.327 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEcc-EEEEccCCChH--HHhhhh
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFCD--SVRKLA 141 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~-~VVnAaG~wa~--~l~~~~ 141 (465)
.++..|.+.+.+.|++|+.+++|+.+..+++| +|+||.... .|+...|+|+ .||+|||-+.. ++.+..
T Consensus 214 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g-~V~Gv~~~~--~~~~~~i~a~~aVilAtGGf~~N~em~~~y 284 (584)
T PRK12835 214 SLVARLRLALKDAGVPLWLDSPMTELITDPDG-AVVGAVVER--EGRTLRIGARRGVILATGGFDHDMDWRKEY 284 (584)
T ss_pred HHHHHHHHHHHhCCceEEeCCEEEEEEECCCC-cEEEEEEEe--CCcEEEEEeceeEEEecCcccCCHHHHHHh
Confidence 35556667778899999999999999987556 899998864 5666789997 59999999874 444443
No 81
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.20 E-value=0.014 Score=57.21 Aligned_cols=71 Identities=23% Similarity=0.175 Sum_probs=53.1
Q ss_pred HHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCC-cEEEEEccEEEEccCCC-hHHHhhhhcC
Q 012358 73 NVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSG-KEFDTYAKVVVNAAGPF-CDSVRKLADQ 143 (465)
Q Consensus 73 ~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg-~~~~i~a~~VVnAaG~w-a~~l~~~~g~ 143 (465)
...++..|.++ +++|+.++.|+.|..+++++++++|++.+..+. ....+.++.||+|||+. +++|+..-|+
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 35567777777 899999999999976522228999999985443 24578899999999984 7888776665
No 82
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.18 E-value=0.067 Score=54.70 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=53.0
Q ss_pred EchhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 67 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
++...+...|.+.+.+. |++++.+++|+++..+++ . +.|.+. +|+ +++|+.||.|.|.||. +++.++..
T Consensus 109 i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~--~-~~v~~~---~g~--~~~a~~vI~AdG~~S~-vR~~~~~~ 178 (391)
T PRK08020 109 VENRVLQLALWQALEAHPNVTLRCPASLQALQRDDD--G-WELTLA---DGE--EIQAKLVIGADGANSQ-VRQMAGIG 178 (391)
T ss_pred EEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCC--e-EEEEEC---CCC--EEEeCEEEEeCCCCch-hHHHcCCC
Confidence 56667778888887776 999999999999987653 2 345543 344 6999999999999995 87877754
No 83
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.18 E-value=0.025 Score=61.10 Aligned_cols=63 Identities=19% Similarity=0.106 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..++..|.+.+.+.|+++++++.++++..++ | +|+||.+.+..+|+...|+|+.||+|||-+.
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN-K-KVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC-C-EEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4577888888888899999999999999865 5 9999988765456666899999999999876
No 84
>PRK08275 putative oxidoreductase; Provisional
Probab=96.18 E-value=0.027 Score=60.66 Aligned_cols=64 Identities=20% Similarity=0.146 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.+...|.+.+.+.|++|++++.|+++..+++| ++.||.+.+..+|+...+.|+.||+|||.++.
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADG-RVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCC-eEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 57788888888999999999999999886335 88999876544565557999999999999764
No 85
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.14 E-value=0.026 Score=61.23 Aligned_cols=67 Identities=21% Similarity=0.119 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCC---CCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEA---SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~---g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
...++..|.+.+.+.|+++++++.|+++..+++ | +|.||...+..+|+...|.|+.||+|+|-++..
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGP-VAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCC-cEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 356778888888999999999999999987642 4 899998755445665679999999999998754
No 86
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.12 E-value=0.013 Score=62.80 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=53.9
Q ss_pred EEEecCeeEchhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 59 AVVYYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 59 a~~~~dg~vdp~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+++.+-+++|+..+...+.+.+.+. |++++. .+|+++..++++ ++.+|.+.+ |. .+.|+.||+|+|.|.
T Consensus 85 AV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~g-~V~GV~t~~---G~--~I~Ad~VILATGtfL 154 (617)
T TIGR00136 85 AVRATRAQIDKVLYRKAMRNALENQPNLSLFQ-GEVEDLILEDND-EIKGVVTQD---GL--KFRAKAVIITTGTFL 154 (617)
T ss_pred cccccHHhCCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEEecCC-cEEEEEECC---CC--EEECCEEEEccCccc
Confidence 4444557999999999999988887 677764 578888765334 788998863 54 699999999999993
No 87
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.12 E-value=0.027 Score=60.93 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
..++..|.+.+.+.|+++++++.|+++..++ | ++.||...+..+|+...|.|+.||+|+|.|+..
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILED-N-QAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC-C-EEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 4688888888889999999999999998764 5 888987654335655579999999999998753
No 88
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.10 E-value=0.027 Score=61.16 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
..++..|.+.+.+.|++++.++.|+++..+++| ++.||.+.+..+|+...+.|+.||+|+|-++..
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADG-DVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCC-eEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 457888888899999999999999999876445 899998865446665679999999999998753
No 89
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.07 E-value=0.03 Score=60.66 Aligned_cols=65 Identities=29% Similarity=0.405 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEcc-EEEEccCCChHHHh
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFCDSVR 138 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~-~VVnAaG~wa~~l~ 138 (465)
..++..|.+.+.+.|++|+.+++|+.+..++ | +|+||.+.+ .+....|.++ .||+|+|.|+....
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~-g-~V~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~n~~ 279 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG-G-RVVGARVID--AGGERRITARRGVVLACGGFSHDLA 279 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-C-EEEEEEEEc--CCceEEEEeCCEEEEcCCCccchHH
Confidence 4577788888999999999999999998865 4 899998875 2333468885 79999999986553
No 90
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.05 E-value=0.023 Score=60.97 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=52.8
Q ss_pred HHHHHHHHH-hCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEE-EEEccEEEEccCC-ChHHHhhhhcCC
Q 012358 73 NVGLALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEF-DTYAKVVVNAAGP-FCDSVRKLADQN 144 (465)
Q Consensus 73 ~~~l~~~A~-~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~-~i~a~~VVnAaG~-wa~~l~~~~g~~ 144 (465)
..+++..|. +.+++|+.++.|+.|..++ + +++||++.+ .+... .+.++.||+|||+ ++.+|+..-|+.
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~-~-ra~GV~~~~--~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG 266 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINFEG-N-RATGVEFKK--GGRKEHTEANKEVILSAGAINSPQLLQLSGIG 266 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEecC-C-eEEEEEEEe--CCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence 345666665 5579999999999999875 4 899999875 23322 3589999999999 899998887764
No 91
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.05 E-value=0.029 Score=60.35 Aligned_cols=65 Identities=28% Similarity=0.339 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..++..|.+.+.+.|++++.++.|+++..++++ +|+||.+.+..+|+...|+|+.||+|+|.++.
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~-~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENR-EVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCc-EEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 457778888888899999999999999876543 59998876533566668999999999998763
No 92
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.00 E-value=0.031 Score=61.18 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 74 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 74 ~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
..|.+.+.+.|++|++++.|+++..++ | +|.||.+.+..+|+...|.|+.||+|||-++..
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~-g-~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD-G-RARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC-C-EEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 445556778899999999999998765 5 899999876445665679999999999998753
No 93
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.97 E-value=0.037 Score=57.63 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=52.9
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
++-..+-..|++.|.+.|++++.+++|+++..++ + +++++.. +|. ++.|+.||.|+|.++ .+.+.+|..
T Consensus 105 v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g-~v~~v~~----~g~--~i~A~~VI~A~G~~s-~l~~~lgl~ 173 (428)
T PRK10157 105 VLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-G-KVVGVEA----DGD--VIEAKTVILADGVNS-ILAEKLGMA 173 (428)
T ss_pred eEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC-C-EEEEEEc----CCc--EEECCEEEEEeCCCH-HHHHHcCCC
Confidence 4545677788999999999999999999998765 3 5555542 243 699999999999986 566666654
No 94
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=95.97 E-value=0.8 Score=46.69 Aligned_cols=149 Identities=17% Similarity=0.146 Sum_probs=83.0
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 146 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~ 146 (465)
++-.++-..+++.. +..++.+++|+++ +.+ +|++. +|+ +++|+.||+|.|.-+..... .
T Consensus 86 I~r~~f~~~l~~~l---~~~i~~~~~V~~v--~~~-----~v~l~---dg~--~~~A~~VI~A~G~~s~~~~~-~----- 144 (370)
T TIGR01789 86 MTSTRFHEGLLQAF---PEGVILGRKAVGL--DAD-----GVDLA---PGT--RINARSVIDCRGFKPSAHLK-G----- 144 (370)
T ss_pred EEHHHHHHHHHHhh---cccEEecCEEEEE--eCC-----EEEEC---CCC--EEEeeEEEECCCCCCCcccc-c-----
Confidence 44445555554332 3336668899988 232 35554 354 79999999999987543322 1
Q ss_pred CceeecceeEEEeCCCCCCCCceEEe--ecc-CC-CcEEEEEecC-CeEEEcccCCCCCCCCCCCCCHHHHHH-HHHHHh
Q 012358 147 PMICPSSGVHIVLPDYYSPEGMGLIV--PKT-KD-GRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQF-ILDAIS 220 (465)
Q Consensus 147 ~~i~p~kG~~lv~~~~~~~~~~~~~~--~~~-~d-gr~~~~~P~~-g~~liG~td~~~~~~~~~~~~~~~i~~-ll~~~~ 220 (465)
-.+...|..+-+..++.+ ...+++ ... .+ .+++|++|.. +..++..|... +.+..+.++.+. |.+.+.
T Consensus 145 -~~Q~f~G~~~r~~~p~~~-~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s----~~~~l~~~~l~~~l~~~~~ 218 (370)
T TIGR01789 145 -GFQVFLGREMRLQEPHGL-ENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYA----DDPLLDRNALSQRIDQYAR 218 (370)
T ss_pred -eeeEEEEEEEEEcCCCCC-CccEEEeeeccCCCCceEEEECcCCCCeEEEEEEecc----CCCCCCHHHHHHHHHHHHH
Confidence 134456766766655333 222332 111 23 3788999997 67788544321 112334444432 223322
Q ss_pred hhccccCCcCCeeEeeeeeeecccC
Q 012358 221 DYLNVKVRRTDVLSAWSGIRPLAMD 245 (465)
Q Consensus 221 ~~~~p~L~~~~i~~~waG~RP~~~d 245 (465)
+ ..+...+|+..-.|+-|++.+
T Consensus 219 ~---~g~~~~~i~~~e~g~iPm~~~ 240 (370)
T TIGR01789 219 A---NGWQNGTPVRHEQGVLPVLLG 240 (370)
T ss_pred H---hCCCceEEEEeeeeEEeeecC
Confidence 2 245566777777799998653
No 95
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=95.92 E-value=0.14 Score=53.45 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
..+..+|++.+...|++++.+++|..|..+++| ++++|++.+ |+ +++|+.||.....|.+.+
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g-~~~~V~~~~---Ge--~i~a~~VV~~~s~~p~~~ 293 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENG-KVCGVKSEG---GE--VAKCKLVICDPSYFPDKV 293 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCC-eEEEEEECC---Cc--EEECCEEEECcccccccc
Confidence 368899999999999999999999999887545 778888753 65 689999999888886544
No 96
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.87 E-value=0.038 Score=59.59 Aligned_cols=63 Identities=30% Similarity=0.429 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEc-cEEEEccCCChHH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDS 136 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a-~~VVnAaG~wa~~ 136 (465)
..++..|.+.+.+.|++|+.+++|+++..++ | +|+||.+.+ .|....|.| +.||+|+|-++..
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~-g-~V~GV~~~~--~g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDDG-G-RVTGAVVDH--RGREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEecC-C-EEEEEEEEE--CCcEEEEEcCCEEEEecCCcccc
Confidence 3567788888999999999999999998754 5 899998764 455566777 5799999998753
No 97
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.86 E-value=0.04 Score=59.97 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHh----CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 71 RLNVGLALTAAL----AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 71 rl~~~l~~~A~~----~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.++..|.+.+.+ .|+++++++.|+++..+++| +|+||.+.+..+|+...|.|+.||+|||-++.
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~g-rV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 197 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGN-RARGIIARNLVTGEIETHSADAVILATGGYGN 197 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCC-EEEEEEEEECCCCcEEEEEcCEEEECCCCCcC
Confidence 455555554443 38999999999999876545 89999987644565567999999999999753
No 98
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.85 E-value=0.11 Score=53.10 Aligned_cols=69 Identities=23% Similarity=0.180 Sum_probs=51.4
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
++...+...|.+.+.+.|...+.+++|+++..+++ . +.|++. +|+ +++||.||.|.|.|+. +++.++.+
T Consensus 108 i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~--~-~~v~~~---~g~--~~~a~~vI~AdG~~S~-vr~~~g~~ 176 (388)
T PRK07494 108 IPNWLLNRALEARVAELPNITRFGDEAESVRPRED--E-VTVTLA---DGT--TLSARLVVGADGRNSP-VREAAGIG 176 (388)
T ss_pred eEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCC--e-EEEEEC---CCC--EEEEeEEEEecCCCch-hHHhcCCC
Confidence 56667888888888887655577899999987654 3 335543 344 6999999999999984 77777765
No 99
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.83 E-value=0.042 Score=57.34 Aligned_cols=63 Identities=17% Similarity=0.322 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
...++..|.+.+.+ .|++|+.+++|+++..++ + +++||.+.+ +++...|.|+.||+|+|.++.
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~-~-~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIEND-N-TCIGAICLK--DNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC-C-EEEEEEEEE--CCcEEEEEcCeEEEccCcccc
Confidence 34678888877765 599999999999998765 4 888977654 355457999999999998764
No 100
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=95.83 E-value=0.047 Score=52.64 Aligned_cols=69 Identities=28% Similarity=0.376 Sum_probs=53.1
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---CCC---cEEEEEccEEEEccCCChH
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSG---KEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---~tg---~~~~i~a~~VVnAaG~wa~ 135 (465)
.|...++..|+..|.++|++++++++|.++..++++.++.||.+... ..| +..+|+|+.||.|+|..+.
T Consensus 97 ~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~ 171 (254)
T TIGR00292 97 ADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAE 171 (254)
T ss_pred eeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCch
Confidence 37778999999999999999999999999987653114788877421 011 2357999999999998764
No 101
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.83 E-value=0.041 Score=59.34 Aligned_cols=62 Identities=24% Similarity=0.349 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEcc-EEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~-~VVnAaG~wa~ 135 (465)
..++..|.+.+.+.|++++.+++|+.+..++ | +|.||.+.. +|+...|.|+ .||+|||-++.
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~-g-~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED-G-RVVGVVVVR--DGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-C-EEEEEEEEE--CCeEEEEEecceEEEecCCccC
Confidence 4577788888999999999999999999865 5 899998864 4666679995 79999999875
No 102
>PRK11445 putative oxidoreductase; Provisional
Probab=95.78 E-value=2.1 Score=43.16 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=48.7
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
++-..+-..|.+ +...|++++.++.|+++..+++ . +.|.+.+ +|+..+++|+.||.|.|..|. ++++++.
T Consensus 96 i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~--~-~~v~~~~--~g~~~~i~a~~vV~AdG~~S~-vr~~l~~ 165 (351)
T PRK11445 96 IDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDD--G-YHVIFRA--DGWEQHITARYLVGADGANSM-VRRHLYP 165 (351)
T ss_pred ccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCC--E-EEEEEec--CCcEEEEEeCEEEECCCCCcH-HhHHhcC
Confidence 555555554544 5578999999999999987654 2 4455432 354457999999999999974 5555543
No 103
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=95.75 E-value=0.039 Score=57.44 Aligned_cols=61 Identities=18% Similarity=0.116 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcC-CCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~-~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..++..|.+.++++|++|+.+++|+++..+. +| ++.+|.+.+ + ...|.|+.||+|+|.++.
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g-~v~gv~~~~---~-~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDG-AHDGPLTTV---G-THRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCC-eEEEEEEcC---C-cEEEEcCEEEEcCCCccc
Confidence 4588899999999999999999999998762 34 788887642 2 247999999999998754
No 104
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.72 E-value=0.045 Score=58.00 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=52.9
Q ss_pred chhHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 68 NDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 68 dp~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
+...++..|.+.+.+ .|+++++++.|+++..++ | ++.||.+.+. ++...++|+.||+|+|.|+..
T Consensus 126 ~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~-g-~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 126 TGREVITTLVKKALNHPNIRIIEGENALDLLIET-G-RVVGVWVWNR--ETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-C-EEEEEEEEEC--CcEEEEEcCEEEECCCcccCC
Confidence 345788888888887 699999999999998764 4 7888888752 444579999999999999864
No 105
>PRK10015 oxidoreductase; Provisional
Probab=95.65 E-value=1.8 Score=45.02 Aligned_cols=68 Identities=22% Similarity=0.210 Sum_probs=51.4
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
++-..+-..|.+.|.+.|++++.+++|+++..++ + ++.+|.+. + .++.|+.||.|.|.++ .+.+.+|.
T Consensus 105 v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~-~v~~v~~~----~--~~i~A~~VI~AdG~~s-~v~~~lg~ 172 (429)
T PRK10015 105 VLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG-N-KVTGVQAG----D--DILEANVVILADGVNS-MLGRSLGM 172 (429)
T ss_pred eehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-C-EEEEEEeC----C--eEEECCEEEEccCcch-hhhcccCC
Confidence 3444566778889999999999999999998765 3 66666531 2 2699999999999975 45565654
No 106
>PRK07804 L-aspartate oxidase; Provisional
Probab=95.55 E-value=0.064 Score=57.61 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---CCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
...+...|.+.+.+.|++++.++.|+++..+++| +|.||.+.+. .++....|.|+.||+|+|.++.
T Consensus 143 G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g-~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 143 GAEVQRALDAAVRADPLDIREHALALDLLTDGTG-AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred HHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC-eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 3467788888888999999999999999876545 8999987632 1222347999999999999874
No 107
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.54 E-value=0.055 Score=57.68 Aligned_cols=64 Identities=28% Similarity=0.312 Sum_probs=51.6
Q ss_pred chhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 68 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.+..++.+|.+.+. .|++|++++.|+++..++ | ++.||.+.+. +|+...+.|+.||+|+|.|+.
T Consensus 128 ~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~-g-~v~Gv~~~~~-~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 128 TGKNLLEHLLQELV-PHVTVVEQEMVIDLIIEN-G-RCIGVLTKDS-EGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred cHHHHHHHHHHHHh-cCCEEEECeEhhheeecC-C-EEEEEEEEEC-CCcEEEEEcCeEEEecCCCcc
Confidence 35567788877665 699999999999998765 4 8899988763 565567999999999999875
No 108
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=95.50 E-value=0.036 Score=59.67 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=54.2
Q ss_pred EEecCeeEchhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 60 VVYYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 60 ~~~~dg~vdp~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
++.+.+++|...+...+.+.+.+. |++++ .++|+++..++ + ++.+|.+.+ |. .|.|+.||.|+|.|..
T Consensus 90 V~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~-g-rV~GV~t~d---G~--~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 90 VRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVEN-G-RVVGVVTQD---GL--EFRAKAVVLTTGTFLR 158 (618)
T ss_pred eeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecC-C-EEEEEEECC---CC--EEECCEEEEeeCcchh
Confidence 444567899999999998888766 78876 56799998765 3 788998753 54 7999999999998864
No 109
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=95.48 E-value=0.059 Score=56.45 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+..++..+.+...++|++|+.+++|++|...++| ++++|++.+...++..++.||.||.|+.+.+
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~-~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDG-SVKHFVLADGEGQRRFEVTADAYVSAMPVDI 276 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCC-CEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence 4678889998888899999999999999865544 6888888642111222689999999998753
No 110
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.45 E-value=0.02 Score=58.27 Aligned_cols=69 Identities=32% Similarity=0.522 Sum_probs=56.4
Q ss_pred eEEEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 57 KGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 57 ~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.|++.|+-|.+ ..+..++++.++++|++|++...|.+|..++ | +++||++.| |. +++++.||-=|++|-
T Consensus 253 ~g~~~Yp~GG~--Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-g-ka~GV~L~d---G~--ev~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 253 KGGWGYPRGGM--GAVSFAIAEGAKRAGAEIFTKATVQSILLDS-G-KAVGVRLAD---GT--EVRSKIVVSNATPWD 321 (561)
T ss_pred CCcccCCCCCh--hHHHHHHHHHHHhccceeeehhhhhheeccC-C-eEEEEEecC---Cc--EEEeeeeecCCchHH
Confidence 44555554333 2477889999999999999999999999887 6 899999986 75 789999999999994
No 111
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.43 E-value=0.25 Score=50.49 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=49.3
Q ss_pred EchhHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 67 MNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
++-..+...|.+.+.+ .|++++.+++|+++..+++ . +.|++. +|. ++.|+.||.|.|.|+. +++.++..
T Consensus 109 ~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~--~-~~v~~~---~g~--~~~a~~vI~AdG~~S~-vr~~~~~~ 178 (395)
T PRK05732 109 VELHDVGQRLFALLDKAPGVTLHCPARVANVERTQG--S-VRVTLD---DGE--TLTGRLLVAADGSHSA-LREALGID 178 (395)
T ss_pred EEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCC--e-EEEEEC---CCC--EEEeCEEEEecCCChh-hHHhhCCC
Confidence 3334455666666655 5899999999999987653 2 335543 243 6899999999999985 77777765
No 112
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.32 E-value=0.051 Score=57.95 Aligned_cols=63 Identities=22% Similarity=0.240 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+..++..|.+.+.+. |+++++++.|+++..++ | +|+||.+.+ ++....+.|+.||+|+|-++.
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~-g-~v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD-G-AVAGVLAAT--AGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC-C-EEEEEEEEe--CCeEEEEECCEEEEcCCCCcC
Confidence 456888888888765 89999999999998764 5 899998865 344446999999999999763
No 113
>PRK06834 hypothetical protein; Provisional
Probab=95.30 E-value=0.06 Score=57.09 Aligned_cols=67 Identities=21% Similarity=0.274 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCC
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 145 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~ 145 (465)
..+...|.+.+.+.|++|+.+++|+++..+++ . +.|++. +|+ +++|+.||.|.|.+| .+.+++|+..
T Consensus 100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~--~-v~v~~~---~g~--~i~a~~vVgADG~~S-~vR~~lgi~~ 166 (488)
T PRK06834 100 NHIERILAEWVGELGVPIYRGREVTGFAQDDT--G-VDVELS---DGR--TLRAQYLVGCDGGRS-LVRKAAGIDF 166 (488)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC--e-EEEEEC---CCC--EEEeCEEEEecCCCC-CcHhhcCCCC
Confidence 35666777778888999999999999988764 2 234442 343 799999999999998 5888887653
No 114
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=95.27 E-value=0.085 Score=56.30 Aligned_cols=68 Identities=24% Similarity=0.290 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEcc-EEEEccCCCh--HHHhhhh
Q 012358 70 SRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFC--DSVRKLA 141 (465)
Q Consensus 70 ~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~-~VVnAaG~wa--~~l~~~~ 141 (465)
..++..+.+.+.+. |++|+++++|+.+..++ | +|.||.+.. +|+...|+|+ .||+|||-|. .++.+..
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~-g-~v~Gv~~~~--~g~~~~i~A~k~VIlAtGG~~~n~~m~~~~ 244 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVED-G-RVVGAVVER--GGERRRVRARRGVLLAAGGFEQNDDMRARY 244 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC-C-EEEEEEEEE--CCcEEEEEeCceEEEeCCCccCCHHHHHHh
Confidence 35777777777664 99999999999998764 5 899998764 4666789996 7999999985 3444433
No 115
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=95.24 E-value=0.11 Score=55.63 Aligned_cols=95 Identities=18% Similarity=0.141 Sum_probs=66.4
Q ss_pred eeeCHHHHHHhC-------CCccccccccCceEEEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEc-CC-CC
Q 012358 33 RYYSAQESAELF-------PTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKD-EA-SN 103 (465)
Q Consensus 33 ~~l~~~el~~~~-------P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~-~~-g~ 103 (465)
.++|+.|.++.+ +.+.. +. ++.+..+. ....++.-|.+.+.++||+|+.+|+|++|..+ ++ .+
T Consensus 190 ~whSA~E~rry~~rf~~~~~~l~~------~s-~l~ft~yn-qyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~ 261 (576)
T PRK13977 190 KWHSALEMRRYMHRFIHHIGGLPD------LS-GLKFTKYN-QYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKK 261 (576)
T ss_pred hhhHHHHHHHHHHHHHHhhccCCc------cc-cccCCCCC-chhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCce
Confidence 678999988765 55532 22 33332221 22568899999999999999999999999885 22 12
Q ss_pred eEEEEEEEECCCCcEE---EEEccEEEEccCCChHHH
Q 012358 104 RIIGARIRNNLSGKEF---DTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 104 ~v~gV~~~d~~tg~~~---~i~a~~VVnAaG~wa~~l 137 (465)
+|.+|.+.. .|+.. ...+|.||+|+|.+++.-
T Consensus 262 ~VtgI~~~~--~~~~~~I~l~~~DlVivTnGs~t~ns 296 (576)
T PRK13977 262 TATAIHLTR--NGKEETIDLTEDDLVFVTNGSITESS 296 (576)
T ss_pred EEEEEEEEe--CCceeEEEecCCCEEEEeCCcCcccc
Confidence 788998864 23222 346899999999987653
No 116
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=95.21 E-value=0.04 Score=56.87 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
...++.+|.+.+.++|++|+.+++|.+|+.+++ +++.|++. ++. ++.||.||+|+|--|
T Consensus 108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~--~~f~v~~~---~~~--~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKKED--GVFGVKTK---NGG--EYEADAVILATGGKS 166 (409)
T ss_dssp HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT--EEEEEEET---TTE--EEEESEEEE----SS
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC--ceeEeecc---Ccc--cccCCEEEEecCCCC
Confidence 345888899999999999999999999998764 67788772 232 799999999998644
No 117
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.12 E-value=0.057 Score=49.57 Aligned_cols=59 Identities=22% Similarity=0.150 Sum_probs=40.4
Q ss_pred chhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 68 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.-..+..-+-..+.+.|..+..+++|+++.++++ + |.|++.+ + .+++|+.||+|+|.++
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~--~-w~v~~~~---~--~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGD--G-WTVTTRD---G--RTIRADRVVLATGHYS 138 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGEETS--EEEEEEETT--T-EEEEETT---S---EEEEEEEEE---SSC
T ss_pred CHHHHHHHHHHHHhhcCcccccCCEEEEEEEecc--E-EEEEEEe---c--ceeeeeeEEEeeeccC
Confidence 3334555566667888999999999999999875 3 7787753 4 3789999999999864
No 118
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.09 E-value=0.091 Score=57.46 Aligned_cols=65 Identities=29% Similarity=0.199 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHhC--------C-----CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 70 SRLNVGLALTAALA--------G-----AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 70 ~rl~~~l~~~A~~~--------G-----a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
..++..|.+.+.+. | +++++++.|+++..++ | ++.||...+..+|+...|.|+.||+|+|.++..
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG-G-RIAGAFGYWRESGRFVLFEAPAVVLATGGIGKS 215 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC-C-EEEEEEEEECCCCeEEEEEcCeEEECCCcccCC
Confidence 35777787777666 7 9999999999998764 5 899987765445666679999999999987643
No 119
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.09 E-value=0.69 Score=49.64 Aligned_cols=69 Identities=22% Similarity=0.177 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 71 RLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 71 rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
.+...|.+.+.+. |++|+.+++|+++..+++ . +.|++.+. +|+..+++||.||-|.|.+|. +++.+|+.
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~--~-v~v~~~~~-~G~~~~i~ad~vVgADG~~S~-vR~~lg~~ 183 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDD--G-VTVTLTDA-DGQRETVRARYVVGCDGANSF-VRRTLGVP 183 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCC--e-EEEEEEcC-CCCEEEEEEEEEEecCCCchh-HHHHcCCe
Confidence 3445566666554 999999999999988764 3 33555432 465568999999999999964 66666654
No 120
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.09 E-value=0.06 Score=56.48 Aligned_cols=68 Identities=24% Similarity=0.340 Sum_probs=50.9
Q ss_pred eeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhh
Q 012358 65 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK 139 (465)
Q Consensus 65 g~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~ 139 (465)
.++|-.++-..|.+.|.++||+++..+ |+.+..+.+| .|.+|++.+ |. +|+||.||-|+|.-+.-+.+
T Consensus 149 yhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g-~i~~v~~~~---g~--~i~ad~~IDASG~~s~L~~~ 216 (454)
T PF04820_consen 149 YHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDG-RITAVRLDD---GR--TIEADFFIDASGRRSLLARK 216 (454)
T ss_dssp EEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTS-EEEEEEETT---SE--EEEESEEEE-SGGG-CCCCC
T ss_pred EEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCC-CEEEEEECC---CC--EEEEeEEEECCCccchhhHh
Confidence 458888999999999999999999875 8888776655 788888753 54 79999999999987654433
No 121
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.03 E-value=0.11 Score=55.72 Aligned_cols=65 Identities=26% Similarity=0.284 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHhC-CCEEEcceeEEEEEEcC-----CCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALA-GAAVLNHAEVISLIKDE-----ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~-----~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...|.+.+.+. |++|++++.|+.+..++ +| +|.||.+.+..+|+...|.|+.||+|+|.++.
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g-~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 208 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGR-RVVGAYVLNRNKERVETIRAKFVVLATGGASK 208 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCC-EEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence 35667777777665 89999999999998653 24 89999987655676668999999999999874
No 122
>PRK10509 bacterioferritin-associated ferredoxin; Provisional
Probab=95.03 E-value=0.041 Score=41.00 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=45.6
Q ss_pred ccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHHcC
Q 012358 373 RLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHK 431 (465)
Q Consensus 373 ~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~lg 431 (465)
.||.|..+++.+|+.||+...+.++.+ |.+.|+.|. .|. .|.+.+.++|.+.+.
T Consensus 2 yVC~C~~Vtd~~I~~ai~~~g~~s~~~-l~~~~~~g~--~CG--~C~~~i~~il~~~~~ 55 (64)
T PRK10509 2 YVCLCNGVSDKKIRQAVRQFHPQSFQQ-LRKFVPVGN--QCG--KCIRAAREVMQDELM 55 (64)
T ss_pred EEEecCCCCHHHHHHHHHHcCCCCHHH-HHHhcCCCC--Ccc--chHHHHHHHHHHHHH
Confidence 489999999999999999768899988 688888886 455 599999999987654
No 123
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.03 E-value=0.12 Score=56.02 Aligned_cols=66 Identities=14% Similarity=0.005 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHhCC----CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAG----AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~G----a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
...++..|.+.+.+.| +++++++.++.+..+++| +|.||.+.+..+++...|.|+.||+|||-++.
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEG-VCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCC-EEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 4457777777776554 778999999999875445 89999987754566567999999999999875
No 124
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.01 E-value=0.1 Score=56.22 Aligned_cols=62 Identities=27% Similarity=0.369 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEcc-EEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~-~VVnAaG~wa~ 135 (465)
..+...|.+.+.+.|++++.+++|+.+..++ | +|.||.+.. +|+...|.|+ .||+|+|-+..
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~-g-~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVED-G-RVTGVHAAE--SGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC-C-EEEEEEEEe--CCcEEEEEeceeEEEccCCcCc
Confidence 3466667777788999999999999998865 4 899998864 4666679996 59999998764
No 125
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.01 E-value=0.37 Score=49.60 Aligned_cols=70 Identities=23% Similarity=0.188 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 69 DSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 69 p~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
...+...|.+.+.+. |++++.+++|++++.+++ . +.|++.+ ++++.+++||.||-|.|.++ .+++.++..
T Consensus 120 ~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~--~-~~v~~~~--~~~~~~i~adlvIgADG~~S-~vR~~~~~~ 190 (415)
T PRK07364 120 HQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQD--A-ATVTLEI--EGKQQTLQSKLVVAADGARS-PIRQAAGIK 190 (415)
T ss_pred cHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--e-eEEEEcc--CCcceEEeeeEEEEeCCCCc-hhHHHhCCC
Confidence 345666677766665 799999999999987653 3 3355543 23334799999999999998 667777654
No 126
>PLN02985 squalene monooxygenase
Probab=94.98 E-value=0.75 Score=49.11 Aligned_cols=73 Identities=23% Similarity=0.358 Sum_probs=53.2
Q ss_pred EchhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 67 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
++-.++...|.+.+.+. |+++.. ..|+++..++ + .+.+|++.+. +|++.++.||.||.|.|.+| .+++.++..
T Consensus 144 i~r~~l~~~L~~~a~~~~~V~i~~-gtvv~li~~~-~-~v~gV~~~~~-dG~~~~~~AdLVVgADG~~S-~vR~~l~~~ 217 (514)
T PLN02985 144 FHNGRFVQRLRQKASSLPNVRLEE-GTVKSLIEEK-G-VIKGVTYKNS-AGEETTALAPLTVVCDGCYS-NLRRSLNDN 217 (514)
T ss_pred eecHHHHHHHHHHHHhCCCeEEEe-eeEEEEEEcC-C-EEEEEEEEcC-CCCEEEEECCEEEECCCCch-HHHHHhccC
Confidence 45557888888888776 688775 4688877654 3 6778887642 46666788999999999997 466666654
No 127
>PLN02487 zeta-carotene desaturase
Probab=94.98 E-value=2.9 Score=45.22 Aligned_cols=62 Identities=15% Similarity=0.076 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCC-CC--eEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEA-SN--RIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~-g~--~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.++..+++..+++|++|+.+++|..|..+++ ++ ++++|++.+ .++...+.+|.||.|+++|+
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~--~~~~~~~~aD~VV~A~p~~~ 360 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK--ATEKEIVKADAYVAACDVPG 360 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec--CCCceEEECCEEEECCCHHH
Confidence 3778888888999999999999999988632 11 378888742 12223588999999999984
No 128
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=94.87 E-value=0.2 Score=46.61 Aligned_cols=73 Identities=30% Similarity=0.384 Sum_probs=53.2
Q ss_pred cCee--EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---CCC---cEEEEEccEEEEccCCCh
Q 012358 63 YDGQ--MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSG---KEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 63 ~dg~--vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---~tg---~~~~i~a~~VVnAaG~wa 134 (465)
.++. +|+..++..|+..|.+.|++|+|.+.|.++...+++ +|.||.+.-. ..| +...|+|+.||-|||.-+
T Consensus 87 ~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~-rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 87 GDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDD-RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSC-EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred CCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCC-eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 3554 389999999999999999999999999999876633 8999987531 111 235899999999999876
Q ss_pred HH
Q 012358 135 DS 136 (465)
Q Consensus 135 ~~ 136 (465)
.-
T Consensus 166 ~v 167 (230)
T PF01946_consen 166 EV 167 (230)
T ss_dssp SS
T ss_pred HH
Confidence 43
No 129
>PLN02815 L-aspartate oxidase
Probab=94.85 E-value=0.11 Score=56.48 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCe--EEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNR--IIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~--v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
...++..|.+.+.++ |++|++++.++++..+++|+. |.||.+.+..+|+...|.|+.||+|||-+..
T Consensus 154 G~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 154 GREIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 345778888887765 899999999999987543313 8899876544676667899999999998764
No 130
>COG2906 Bfd Bacterioferritin-associated ferredoxin [Inorganic ion transport and metabolism]
Probab=94.73 E-value=0.071 Score=39.08 Aligned_cols=51 Identities=4% Similarity=0.023 Sum_probs=42.9
Q ss_pred cccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHHc
Q 012358 374 LAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEH 430 (465)
Q Consensus 374 v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~l 430 (465)
||-|..+|..+|+.|++ +++.|+.| |++++++|- .|. .|.....++|.+++
T Consensus 3 VClCngVtD~~Ir~av~-~g~tt~~e-l~~~~gvGs--~CG--kC~~~Arevl~e~~ 53 (63)
T COG2906 3 VCLCNGVTDKQIREAVA-QGATTLKE-LRRFTGVGS--QCG--KCVRAAREVLEEAL 53 (63)
T ss_pred EEeecCccHHHHHHHHH-HcCCCHHH-HHHHcCccc--chH--HHHHHHHHHHHHHH
Confidence 78999999999999999 57999999 688888875 343 68888889888764
No 131
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.66 E-value=0.15 Score=55.37 Aligned_cols=64 Identities=19% Similarity=0.004 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..++..|.+.+.+ .|++++.++.|+++..++ | ++.||.+.+..+|+...|.|+.||+|+|.++.
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN-G-VFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC-C-EEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence 3477788887766 699999999999998765 4 88998875544565457999999999999853
No 132
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=94.65 E-value=0.13 Score=54.54 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
..++.+|++...++|++|+.+++|++|..+++ ++.+|.+.+..+|+..++.||.||.++.++
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~--~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGG--RAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCC--eEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 35889999999999999999999999998763 667787764212222368999999999885
No 133
>PRK09126 hypothetical protein; Provisional
Probab=94.57 E-value=0.81 Score=46.70 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHH-hCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 70 SRLNVGLALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 70 ~rl~~~l~~~A~-~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
..+...+.+.+. ..|++++.+++|+++..+++ . +.|.+. +|+ ++.||.||.|.|.++. +++.+|..
T Consensus 110 ~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~--~-~~v~~~---~g~--~~~a~~vI~AdG~~S~-vr~~~g~~ 176 (392)
T PRK09126 110 HLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD--G-AQVTLA---NGR--RLTARLLVAADSRFSA-TRRQLGIG 176 (392)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC--e-EEEEEc---CCC--EEEeCEEEEeCCCCch-hhHhcCCC
Confidence 445566666654 46999999999999987653 2 345554 354 6999999999999874 66666654
No 134
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=94.52 E-value=0.2 Score=54.35 Aligned_cols=65 Identities=20% Similarity=0.105 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 70 SRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 70 ~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
..++..|.+.+.+. |+++++++.|+++..++ | +|.||...+..+|+...|.|+.||.|+|-++..
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD-G-RVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC-C-EEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 45778888877664 89999999999998865 5 899998765446766689999999999998753
No 135
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=94.48 E-value=0.21 Score=46.45 Aligned_cols=74 Identities=28% Similarity=0.396 Sum_probs=55.8
Q ss_pred Cee--EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---CCC---cEEEEEccEEEEccCCChH
Q 012358 64 DGQ--MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSG---KEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 64 dg~--vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---~tg---~~~~i~a~~VVnAaG~wa~ 135 (465)
||. .|+..++..++..|.+.|++|+|.+.|.++...++- +|.||.+.=+ ..+ +...|+|+.||-|||--+.
T Consensus 101 ~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~-rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~ 179 (262)
T COG1635 101 DGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDP-RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAE 179 (262)
T ss_pred CceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCC-ceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchH
Confidence 554 489999999999999999999999999999876642 5888766311 001 1236889999999998776
Q ss_pred HHh
Q 012358 136 SVR 138 (465)
Q Consensus 136 ~l~ 138 (465)
-+.
T Consensus 180 v~~ 182 (262)
T COG1635 180 VVS 182 (262)
T ss_pred HHH
Confidence 554
No 136
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=94.48 E-value=0.19 Score=54.57 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...|.+.+.+. |++++.++.|+++..++ | ++.||...+..+|+...|+|+.||.|+|-++.
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD-G-HVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC-C-EEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 35667777777665 79999999999998765 5 88898775434566568999999999998774
No 137
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=94.42 E-value=0.098 Score=52.83 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=48.1
Q ss_pred CeeEchh-----HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccC
Q 012358 64 DGQMNDS-----RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG 131 (465)
Q Consensus 64 dg~vdp~-----rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG 131 (465)
.|++-|. .++.+++....+.||+++++++|.++.++++ ...+.+. +|+ +|+|+.+|+|+|
T Consensus 100 ~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~---~f~l~t~---~g~--~i~~d~lilAtG 164 (408)
T COG2081 100 LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS---GFRLDTS---SGE--TVKCDSLILATG 164 (408)
T ss_pred CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc---eEEEEcC---CCC--EEEccEEEEecC
Confidence 4776333 5889999999999999999999999998753 2445544 354 699999999999
No 138
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.40 E-value=0.18 Score=52.28 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..++...|.+...+.|++++.+++|+++..++ + ++..+... +|+...+.||.||+|+|.+.
T Consensus 258 G~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~-~V~~v~~~---~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 258 GLRLQNALRRAFERLGGRIMPGDEVLGAEFEG-G-RVTAVWTR---NHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-C-EEEEEEee---CCceEEEECCEEEEeCCCcc
Confidence 34678888888889999999999999998765 3 56655533 35555799999999999763
No 139
>PRK08013 oxidoreductase; Provisional
Probab=94.24 E-value=0.81 Score=47.04 Aligned_cols=69 Identities=23% Similarity=0.228 Sum_probs=51.5
Q ss_pred EchhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 67 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
+.-..+...|.+.+.+. |++++.+++|++++.+++ . +.|.+. +|+ +++||.||-|-|.+| .+++.++++
T Consensus 108 i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--~-v~v~~~---~g~--~i~a~lvVgADG~~S-~vR~~~~~~ 177 (400)
T PRK08013 108 IENSVIHYALWQKAQQSSDITLLAPAELQQVAWGEN--E-AFLTLK---DGS--MLTARLVVGADGANS-WLRNKADIP 177 (400)
T ss_pred EEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--e-EEEEEc---CCC--EEEeeEEEEeCCCCc-HHHHHcCCC
Confidence 44446777788777775 899999999999987654 2 334443 354 699999999999996 677777764
No 140
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=94.17 E-value=0.26 Score=50.83 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh----------HHHhh
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC----------DSVRK 139 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa----------~~l~~ 139 (465)
..++..+.+.+.+.|++++.+++|+++..++ ..+.|++ ++. ++.||.||+|+|.++ -.+++
T Consensus 105 ~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~---~~~~v~~----~~~--~i~ad~VIlAtG~~s~p~~gs~G~g~~la~ 175 (400)
T TIGR00275 105 ADVLDALLNELKELGVEILTNSKVKSIKKDD---NGFGVET----SGG--EYEADKVILATGGLSYPQLGSTGDGYEIAE 175 (400)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecC---CeEEEEE----CCc--EEEcCEEEECCCCcccCCCCCCcHHHHHHH
Confidence 4678888888899999999999999997754 2345554 233 689999999999976 45666
Q ss_pred hhcCC
Q 012358 140 LADQN 144 (465)
Q Consensus 140 ~~g~~ 144 (465)
.+|..
T Consensus 176 ~lG~~ 180 (400)
T TIGR00275 176 SLGHT 180 (400)
T ss_pred HCCCC
Confidence 66654
No 141
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=94.07 E-value=0.17 Score=51.65 Aligned_cols=62 Identities=21% Similarity=0.381 Sum_probs=47.0
Q ss_pred CeeEchhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 64 DGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 64 dg~vdp~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
-.++|-..+-..+.+.+... +.+|+ .++|+++..++ + +|+||.+. +|+ .+.|+.||+|+|++
T Consensus 89 r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~-~-~v~GV~~~---~g~--~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 89 RAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVEN-G-KVKGVVTK---DGE--EIEADAVVLATGTF 151 (392)
T ss_dssp EEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECT-T-EEEEEEET---TSE--EEEECEEEE-TTTG
T ss_pred HhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecC-C-eEEEEEeC---CCC--EEecCEEEEecccc
Confidence 35788888888888877774 56765 68999999876 4 99999985 465 79999999999993
No 142
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=94.05 E-value=2.9 Score=44.96 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 71 RLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 71 rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
.+-..|.+.+.+. |++++.+++|+++..+++ . +.+.+.+. +| ..+++|+.||.|.|.++. +++.+|++
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~-v~v~~~~~-~g-~~~i~ad~vVgADG~~S~-vR~~lg~~ 194 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDD--G-VTLTVETP-DG-PYTLEADWVIACDGARSP-LREMLGLE 194 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCC--E-EEEEEECC-CC-cEEEEeCEEEECCCCCcH-HHHHcCCC
Confidence 3445566666665 799999999999987654 3 33444431 23 246999999999999985 77777765
No 143
>PRK07395 L-aspartate oxidase; Provisional
Probab=94.04 E-value=0.15 Score=54.82 Aligned_cols=63 Identities=17% Similarity=0.113 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHhC-CCEEEcceeEEEEEEcC-CCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALA-GAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~-~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..++..|.+.+.+. |++|+.++.|+++..++ +| +|.||.+.+ +|....|.|+.||+|||-++.
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g-~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETG-RCQGISLLY--QGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCC-EEEEEEEEE--CCeEEEEEcCEEEEcCCCCcc
Confidence 45777888877654 99999999999998763 25 899998764 465556899999999998643
No 144
>PRK07588 hypothetical protein; Provisional
Probab=93.79 E-value=1.7 Score=44.31 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhh
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL 140 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~ 140 (465)
.|...|.+ +...|++++.+++|+++..+++ .+ .|++. +|+ ++.+|.||.|.|.||. +++.
T Consensus 104 ~l~~~L~~-~~~~~v~i~~~~~v~~i~~~~~--~v-~v~~~---~g~--~~~~d~vIgADG~~S~-vR~~ 163 (391)
T PRK07588 104 DLAAAIYT-AIDGQVETIFDDSIATIDEHRD--GV-RVTFE---RGT--PRDFDLVIGADGLHSH-VRRL 163 (391)
T ss_pred HHHHHHHH-hhhcCeEEEeCCEEeEEEECCC--eE-EEEEC---CCC--EEEeCEEEECCCCCcc-chhh
Confidence 34444544 4456899999999999987653 32 34443 354 5899999999999974 3443
No 145
>PRK06996 hypothetical protein; Provisional
Probab=93.66 E-value=1.7 Score=44.64 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=50.7
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
++-..+...|.+.+.+.|+++...++|+++..+++ . +.+.+.+. +|+ .+++|+.||.|-|.-+..+.+.++..
T Consensus 112 v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~--~-v~v~~~~~-~g~-~~i~a~lvIgADG~~~s~~r~~~~~~ 184 (398)
T PRK06996 112 VRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDAD--G-VTLALGTP-QGA-RTLRARIAVQAEGGLFHDQKADAGDS 184 (398)
T ss_pred EEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCC--e-EEEEECCC-Ccc-eEEeeeEEEECCCCCchHHHHHcCCC
Confidence 45557888899999999999999999999977654 2 22333321 121 37999999999996433344655554
No 146
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=93.64 E-value=6.3 Score=43.30 Aligned_cols=76 Identities=22% Similarity=0.193 Sum_probs=51.4
Q ss_pred chhHHHHHHHHHHHhCCC--EEEcceeEEEEEEcCCCCeEEEEEEEEC---CCCcEEEEEccEEEEccCCChHHHhhhhc
Q 012358 68 NDSRLNVGLALTAALAGA--AVLNHAEVISLIKDEASNRIIGARIRNN---LSGKEFDTYAKVVVNAAGPFCDSVRKLAD 142 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga--~i~~~t~V~~i~~~~~g~~v~gV~~~d~---~tg~~~~i~a~~VVnAaG~wa~~l~~~~g 142 (465)
+-.++-..|.+.+.+.|+ .+..+++|+++..++++..-+.|++.+. .+|+..+++|++||=|=|+.| .+++.+|
T Consensus 139 ~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S-~VR~~lg 217 (634)
T PRK08294 139 NQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARS-RVRKAIG 217 (634)
T ss_pred CHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCch-HHHHhcC
Confidence 334566667777777775 6778899999987542102234566542 135445899999999999986 5777777
Q ss_pred CC
Q 012358 143 QN 144 (465)
Q Consensus 143 ~~ 144 (465)
+.
T Consensus 218 i~ 219 (634)
T PRK08294 218 RE 219 (634)
T ss_pred CC
Confidence 64
No 147
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=93.63 E-value=0.078 Score=59.56 Aligned_cols=56 Identities=5% Similarity=0.157 Sum_probs=49.0
Q ss_pred CCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHHcC
Q 012358 371 GKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHK 431 (465)
Q Consensus 371 ~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~lg 431 (465)
+..||.|+.|++.+|+.||+.-.+.|+.+ |+++|++|. .|.+ |.+.+.+++.++++
T Consensus 409 ~~~vC~C~~Vt~~~i~~ai~~~~~~~~~~-v~~~t~ag~--~Cg~--C~~~~~~il~~~~~ 464 (785)
T TIGR02374 409 SEQICSCNTVTKGAIIDAIHTGSCTTVEE-LKACTKAGT--SCGG--CKPLVEQLLRAELN 464 (785)
T ss_pred CCEEeeCCCCcHHHHHHHHHhCCCCCHHH-HHHhCCCCC--CCcC--HHHHHHHHHHHHHh
Confidence 78999999999999999999644999988 699999996 4754 99999999987666
No 148
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.58 E-value=0.29 Score=50.08 Aligned_cols=69 Identities=9% Similarity=0.106 Sum_probs=50.8
Q ss_pred EchhHHHHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 67 MNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
++...+...|.+.+.+.| ++++.+++|+++..+++ .+ .|.+. +|+ ++.||.||.|.|.|+..-..+.+.
T Consensus 106 i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~--~v-~v~~~---~g~--~~~ad~vV~AdG~~S~~r~~~~g~ 175 (396)
T PRK08163 106 IHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD--GV-TVFDQ---QGN--RWTGDALIGCDGVKSVVRQSLVGD 175 (396)
T ss_pred EEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC--ce-EEEEc---CCC--EEecCEEEECCCcChHHHhhccCC
Confidence 566678888888887775 89999999999987553 22 34443 354 699999999999998765444444
No 149
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.46 E-value=0.39 Score=48.98 Aligned_cols=72 Identities=17% Similarity=0.101 Sum_probs=51.7
Q ss_pred CeeEch-----hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh----
Q 012358 64 DGQMND-----SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC---- 134 (465)
Q Consensus 64 dg~vdp-----~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa---- 134 (465)
+|++-| ..++.+|...+.++|++|+.+++|++| . ++ + +.+.+.+ + ...+.|+.||+|+|--+
T Consensus 75 ~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i-~-~~--~-~~v~~~~---~-~~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 75 SGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW-Q-GG--T-LRFETPD---G-QSTIEADAVVLALGGASWSQL 145 (376)
T ss_pred CCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE-e-CC--c-EEEEECC---C-ceEEecCEEEEcCCCcccccc
Confidence 466544 458888999999999999999999999 2 22 2 5666531 2 22699999999999754
Q ss_pred ------HHHhhhhcCC
Q 012358 135 ------DSVRKLADQN 144 (465)
Q Consensus 135 ------~~l~~~~g~~ 144 (465)
-.+++.+|..
T Consensus 146 Gs~g~gy~la~~lGh~ 161 (376)
T TIGR03862 146 GSDGAWQQVLDQRGVS 161 (376)
T ss_pred CCCcHHHHHHHHCCCc
Confidence 2455666654
No 150
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=93.34 E-value=0.023 Score=59.14 Aligned_cols=73 Identities=29% Similarity=0.393 Sum_probs=0.0
Q ss_pred eEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 66 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 66 ~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
.++|..+-..+.+.+.+.|++++.++.|+++..++ + +|++|.+.+. .| ..+|+|+.||-|+|- ..|+.++|.+
T Consensus 86 ~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~-~-~i~~V~~~~~-~g-~~~i~A~~~IDaTG~--g~l~~~aG~~ 158 (428)
T PF12831_consen 86 PFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG-G-RITGVIVETK-SG-RKEIRAKVFIDATGD--GDLAALAGAP 158 (428)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccc-c-cccccccccc-cc-ccccccccccccccc--cccccccccc
Confidence 46788777777777788999999999999999876 4 8999998753 24 568999999999994 5677777754
No 151
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.27 E-value=0.17 Score=53.54 Aligned_cols=55 Identities=29% Similarity=0.334 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
.++.+|++.++++|++|+++++|+.|..++ | +.+++.+. .| ..+.+|.||.++.+
T Consensus 225 al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g-~g~~~~~~---~g--~~~~ad~vv~~~~~ 279 (487)
T COG1233 225 ALVDALAELAREHGGEIRTGAEVSQILVEG-G-KGVGVRTS---DG--ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHcCCEEECCCceEEEEEeC-C-cceEEecc---cc--ceeccceeEecCch
Confidence 589999999999999999999999999876 3 54444443 23 36999999999988
No 152
>PRK08401 L-aspartate oxidase; Provisional
Probab=93.25 E-value=0.32 Score=51.20 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
...++..|.+.+.+.|+++++. .|+.+..++ | ++++|.+. +. .+.++.||+|||.|+...
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g-~v~Gv~~~----g~--~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEELAIKN-G-KAYGVFLD----GE--LLKFDATVIATGGFSGLF 178 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-C-EEEEEEEC----CE--EEEeCeEEECCCcCcCCC
Confidence 3468888999999999999875 788887654 4 78888762 43 689999999999998754
No 153
>PRK02106 choline dehydrogenase; Validated
Probab=93.23 E-value=0.3 Score=52.75 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=50.2
Q ss_pred HHHHHHH-hCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC-hHHHhhhhcCC
Q 012358 75 GLALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKLADQN 144 (465)
Q Consensus 75 ~l~~~A~-~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w-a~~l~~~~g~~ 144 (465)
+++..+. +.+++|+.++.|+.|..++ + +++||++.+. .+....+.++.||+|||++ +++|+..-|+.
T Consensus 205 ~~l~~a~~~~nl~i~~~a~V~rI~~~~-~-~a~GV~~~~~-~~~~~~~~ak~VILaaGai~TP~LLl~SGIG 273 (560)
T PRK02106 205 AYLDPALKRPNLTIVTHALTDRILFEG-K-RAVGVEYERG-GGRETARARREVILSAGAINSPQLLQLSGIG 273 (560)
T ss_pred HhhccccCCCCcEEEcCCEEEEEEEeC-C-eEEEEEEEeC-CcEEEEEeeeeEEEccCCCCCHHHHhhcCCC
Confidence 3444454 4569999999999999875 4 8999998763 2333357899999999987 78887766654
No 154
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=93.16 E-value=0.37 Score=51.85 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=45.9
Q ss_pred HHHHHHHHHHH---hC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCC-------------CcEEEEEccEEEEccCCC
Q 012358 71 RLNVGLALTAA---LA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLS-------------GKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 71 rl~~~l~~~A~---~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~t-------------g~~~~i~a~~VVnAaG~w 133 (465)
.++..|.+.+. +. |++|+.+++++++..++ | +|+||.+.+..+ ++...|.|+.||+|||-+
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~-g-~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf 226 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVTD-G-AVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGI 226 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC-C-EEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCc
Confidence 45566655443 33 59999999999998864 5 899998642111 123579999999999998
Q ss_pred hHH
Q 012358 134 CDS 136 (465)
Q Consensus 134 a~~ 136 (465)
+..
T Consensus 227 ~~n 229 (549)
T PRK12834 227 GGN 229 (549)
T ss_pred ccC
Confidence 753
No 155
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=93.10 E-value=0.41 Score=49.14 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhh
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 141 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~ 141 (465)
-..++..+.+.....|++|+++|+|.+|...++ .+.+|.+.+ |+ +|.+++||.|-|--+.+...++
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~--~~~~v~~~~---g~--~i~~~~vvlA~Grsg~dw~~~l 237 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN--EVLGVKLTK---GE--EIEADYVVLAPGRSGRDWFEML 237 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC--ceEEEEccC---Cc--EEecCEEEEccCcchHHHHHHH
Confidence 445777888888999999999999999998764 567787763 54 7999999999998766665443
No 156
>PRK07190 hypothetical protein; Provisional
Probab=93.03 E-value=0.44 Score=50.51 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
.+...|.+.+.+.|+++..+++|+++..+++ .+. +.+. +|+ +++|++||.|.|.+| .+++.+|+.
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~--~v~-v~~~---~g~--~v~a~~vVgADG~~S-~vR~~lgi~ 174 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQA--GCL-TTLS---NGE--RIQSRYVIGADGSRS-FVRNHFNVP 174 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--eeE-EEEC---CCc--EEEeCEEEECCCCCH-HHHHHcCCC
Confidence 4445566677889999999999999988764 322 3332 354 799999999999985 566777765
No 157
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=92.99 E-value=0.31 Score=52.19 Aligned_cols=61 Identities=25% Similarity=0.335 Sum_probs=48.2
Q ss_pred hCC-CEEEcceeEEEEEEcCCC-CeEEEEEEEECCCCcEEEEEccEEEEccCC-ChHHHhhhhc
Q 012358 82 LAG-AAVLNHAEVISLIKDEAS-NRIIGARIRNNLSGKEFDTYAKVVVNAAGP-FCDSVRKLAD 142 (465)
Q Consensus 82 ~~G-a~i~~~t~V~~i~~~~~g-~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~-wa~~l~~~~g 142 (465)
+.| ++|+.++.|+.|..+.++ ++|.+|.+.|..+|+.++++|+.||+|||. .+.+|+-..+
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~ 288 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSG 288 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCC
Confidence 355 999999999999886432 268999998865688889999999999985 5777765443
No 158
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=92.91 E-value=9.2 Score=39.07 Aligned_cols=66 Identities=24% Similarity=0.212 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhc
Q 012358 69 DSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 142 (465)
Q Consensus 69 p~rl~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g 142 (465)
-..+...|.+.+.+.+ ++++..++|+.+..+++ .+. |++.. +|+ +++||.||-|=|.|| .+++.++
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~--~v~-v~l~~--dG~--~~~a~llVgADG~~S-~vR~~~~ 169 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD--GVT-VTLSF--DGE--TLDADLLVGADGANS-AVRRAAG 169 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC--ceE-EEEcC--CCc--EEecCEEEECCCCch-HHHHhcC
Confidence 3457777888887777 89999999999998764 455 66651 365 799999999999985 5667777
No 159
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=92.91 E-value=0.12 Score=55.96 Aligned_cols=57 Identities=7% Similarity=0.080 Sum_probs=51.0
Q ss_pred CCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHHcCCC
Q 012358 371 GKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWD 433 (465)
Q Consensus 371 ~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~lgw~ 433 (465)
...||.|..|++.+|..||. +.+.|++| |+.+|.++- .|.+ |.|-|.++|+.+++-.
T Consensus 412 ~~~IC~Cn~VtKG~I~~aI~-~g~~tv~~-vk~~TkA~t--sCGs--C~plveqlL~~~~~~~ 468 (793)
T COG1251 412 SAQICGCNGVTKGAIIGAIT-KGCTTVDE-VKACTKAGT--SCGS--CKPLVEQLLAATLGDQ 468 (793)
T ss_pred CCeeecCCCccHHHHHHHHH-ccCCCHHH-HHHhhcCCC--CCcC--cHHHHHHHHHhhcccc
Confidence 46899999999999999999 89999988 699999997 4664 9999999999988855
No 160
>PLN02661 Putative thiazole synthesis
Probab=92.72 E-value=0.57 Score=47.22 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=46.5
Q ss_pred chhHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEE------CCCC---cEEEEEccEEEEccCC
Q 012358 68 NDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRN------NLSG---KEFDTYAKVVVNAAGP 132 (465)
Q Consensus 68 dp~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d------~~tg---~~~~i~a~~VVnAaG~ 132 (465)
+...++..|++.+.+ .|+++++++.|+++..++ + ++.||.+.. ..++ +...|+|+.||.|||-
T Consensus 170 ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-g-rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-D-RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred chHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-C-EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 444566778877765 689999999999999876 4 888988531 1111 2246999999999994
No 161
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=91.98 E-value=0.67 Score=54.50 Aligned_cols=66 Identities=23% Similarity=0.352 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHh---CCCEEEcceeEEEEEEcCC----C---CeEEEEEEEEC--CCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAAL---AGAAVLNHAEVISLIKDEA----S---NRIIGARIRNN--LSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~---~Ga~i~~~t~V~~i~~~~~----g---~~v~gV~~~d~--~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...|.+.+.+ .|++|+++++|+++..+++ | ++|+||.+.+. .+|+...|.|+.||+|||-++.
T Consensus 544 ~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 544 FTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN 621 (1167)
T ss_pred HHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence 3455566665554 4999999999999998631 1 16999988752 1466668999999999999875
No 162
>PRK07208 hypothetical protein; Provisional
Probab=91.95 E-value=0.67 Score=48.82 Aligned_cols=71 Identities=21% Similarity=0.147 Sum_probs=49.9
Q ss_pred EEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 59 AVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 59 a~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
.+.++.+.+ ..++.+|++.+.+.|++|+.+++|+.|..++++ .++.+...+ .+|+..++.||.||.|+-++
T Consensus 209 ~~~~p~gG~--~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~-~v~~~~~~~-~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 209 EFRYPKLGP--GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDG-RIAVVVVND-TDGTEETVTADQVISSMPLR 279 (479)
T ss_pred EEeCCCCCc--chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCc-EEEEEEEEc-CCCCEEEEEcCEEEECCCHH
Confidence 344544333 357788888888899999999999999987643 344444332 23544469999999998776
No 163
>PRK07045 putative monooxygenase; Reviewed
Probab=91.80 E-value=8.9 Score=39.03 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=45.6
Q ss_pred HHHHHHHHHHH-hCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhh
Q 012358 71 RLNVGLALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK 139 (465)
Q Consensus 71 rl~~~l~~~A~-~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~ 139 (465)
.+...|.+.+. ..|++++.+++|+++..++++ .++.|++. +|+ ++.||.||-|-|.+| .+++
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~~~v~~~---~g~--~~~~~~vIgADG~~S-~vR~ 169 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADG-TVTSVTLS---DGE--RVAPTVLVGADGARS-MIRD 169 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCC-cEEEEEeC---CCC--EEECCEEEECCCCCh-HHHH
Confidence 46666666654 468999999999999886654 44566654 354 799999999999987 3444
No 164
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=91.65 E-value=0.87 Score=46.64 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
..+...|++.+.+.|++++.+++|+++...++ ....|++.+ +|++.+++||.||-|-|.+| .+++.++.
T Consensus 103 ~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~--~~~~V~~~~--~G~~~~i~ad~vVgADG~~S-~vR~~~~~ 171 (392)
T PRK08243 103 TEVTRDLMAARLAAGGPIRFEASDVALHDFDS--DRPYVTYEK--DGEEHRLDCDFIAGCDGFHG-VSRASIPA 171 (392)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeEEEEEecCC--CceEEEEEc--CCeEEEEEeCEEEECCCCCC-chhhhcCc
Confidence 45677888888889999999999999976222 223455532 46656899999999999997 56676654
No 165
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=91.60 E-value=0.26 Score=48.40 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=47.8
Q ss_pred CCCCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHH
Q 012358 369 GLGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATE 429 (465)
Q Consensus 369 ~~~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~ 429 (465)
+.+..||.|..|+..+|+.||+.-.+.++++ |..+|+.|- .|.+ |.+.+.++|.+.
T Consensus 131 ~~~~~VC~C~~Vt~~~I~~ai~~~g~~t~~e-l~~~t~agt--~CG~--C~~~~~~il~~~ 186 (290)
T TIGR02000 131 DEGALVCKCFGVDENMVRRAVIENDLTTLEE-VTNYTKAGG--GCGS--CHEKIEDVLKEV 186 (290)
T ss_pred CCCCeEeecCCCcHHHHHHHHHHcCCCcHHH-HHhhccCCC--CCcc--hHHHHHHHHHHH
Confidence 4578999999999999999998779999999 699999997 4653 888888888664
No 166
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=91.45 E-value=0.75 Score=48.59 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcC--CCC-eEEEEEEEECCCCc-EEEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDE--ASN-RIIGARIRNNLSGK-EFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~--~g~-~v~gV~~~d~~tg~-~~~i~a~~VVnAaG~wa 134 (465)
.+...+++...++|++|+.+++|++|..++ ++. ++++|++.+ |+ ..++.||.||.|+.+|.
T Consensus 220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~---g~~~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK---PEGKKVIKADAYVAACDVPG 284 (474)
T ss_pred hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec---CCcceEEECCEEEECCChHH
Confidence 355668888888999999999999998753 221 267777753 32 12589999999999884
No 167
>PRK07538 hypothetical protein; Provisional
Probab=91.34 E-value=4.8 Score=41.47 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=50.3
Q ss_pred EchhHHHHHHHHHHHh-CCC-EEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 67 MNDSRLNVGLALTAAL-AGA-AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~-~Ga-~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
++-..|...|++.+.+ .|. .|+.+++|+++..++++ +.+.+.+..+|+..+++||.||-|-|.+|. +++.++.
T Consensus 99 i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~---~~~~~~~~~~g~~~~~~adlvIgADG~~S~-vR~~l~~ 173 (413)
T PRK07538 99 IHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV---TVVFLGDRAGGDLVSVRGDVLIGADGIHSA-VRAQLYP 173 (413)
T ss_pred EEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc---eEEEEeccCCCccceEEeeEEEECCCCCHH-HhhhhcC
Confidence 5555677778887765 475 69999999999876543 223444322344458999999999999974 5555543
No 168
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=91.30 E-value=2.9 Score=42.93 Aligned_cols=65 Identities=22% Similarity=0.215 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 71 RLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 71 rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
.+...|.+.+.+. |+++...++|+++..+++ . +.|.+. +|+ +++||.||-|-|.+| .+++.++..
T Consensus 112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~-~~v~~~---~g~--~~~a~lvIgADG~~S-~vR~~~~~~ 177 (405)
T PRK08850 112 VIQLALLEQVQKQDNVTLLMPARCQSIAVGES--E-AWLTLD---NGQ--ALTAKLVVGADGANS-WLRRQMDIP 177 (405)
T ss_pred HHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC--e-EEEEEC---CCC--EEEeCEEEEeCCCCC-hhHHHcCCC
Confidence 4556666666554 799999999999987653 2 345553 354 699999999999986 556666654
No 169
>PRK07233 hypothetical protein; Provisional
Probab=90.76 E-value=0.71 Score=47.65 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
..++.+|++.+.+.|++|+.+++|++|..+++ ++..+.. +++ ++.||.||.|+.+.
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~--~~~~~~~----~~~--~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGG--GVTGVEV----DGE--EEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCC--ceEEEEe----CCc--eEECCEEEECCCHH
Confidence 46889999999999999999999999987653 5544442 243 69999999999864
No 170
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=90.63 E-value=1.1 Score=51.35 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHhC----CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALA----GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~----Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...|.+.+.+. ++.+.+++.++++..++ | ++.||...+..+|+...|.|+.||+|||-++.
T Consensus 139 ~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 206 (897)
T PRK13800 139 KDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG-G-RAVGAAALNTRTGEFVTVGAKAVILATGPCGR 206 (897)
T ss_pred hhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC-C-EEEEEEEEecCCCcEEEEECCEEEECCCcccc
Confidence 34555666665543 67888888888887754 5 89999876655687778999999999998753
No 171
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=90.06 E-value=1.2 Score=45.33 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 144 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~~ 144 (465)
|..+...+.+...+.|++++.+++|+++..+++ .+.|.+. +|+ ++.||.||+|+|.... .+.+..|..
T Consensus 182 ~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~---~~~v~~~---~g~--~i~~D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 182 PPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDS---GIRATLD---SGR--SIEVDAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred CHHHHHHHHHHHHhCCCEEEECCeEEEEEccCC---EEEEEEc---CCc--EEECCEEEECcCCCcchHHHHHCCCC
Confidence 344555666777889999999999999976542 2445554 354 6999999999999865 466655553
No 172
>PRK06753 hypothetical protein; Provisional
Probab=89.71 E-value=11 Score=38.09 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 72 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 72 l~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
+...|.+.+ .+.+|+.+++|++++.+++ . +.|++. +|+ ++++|.||-|-|.+| .+++.++.
T Consensus 100 l~~~L~~~~--~~~~i~~~~~v~~i~~~~~--~-v~v~~~---~g~--~~~~~~vigadG~~S-~vR~~~~~ 160 (373)
T PRK06753 100 LIDIIKSYV--KEDAIFTGKEVTKIENETD--K-VTIHFA---DGE--SEAFDLCIGADGIHS-KVRQSVNA 160 (373)
T ss_pred HHHHHHHhC--CCceEEECCEEEEEEecCC--c-EEEEEC---CCC--EEecCEEEECCCcch-HHHHHhCC
Confidence 444444333 2468999999999987653 3 334443 354 689999999999997 55665554
No 173
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.65 E-value=1.3 Score=43.06 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=44.3
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+.+..+...+.+.+.+.|++++. ++|+++...++ .+.|.+. ++. ++.+|.||+|+|.+.
T Consensus 54 ~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~---~~~v~~~---~~~--~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 54 ISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDR---PFKVKTG---DGK--EYTAKAVIIATGASA 112 (300)
T ss_pred CChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCC---eeEEEeC---CCC--EEEeCEEEECCCCCc
Confidence 44566777788888899999988 89999987543 2445543 243 699999999999864
No 174
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=88.62 E-value=12 Score=39.01 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=50.8
Q ss_pred EchhHHHHHHHHHHHhCC---CEEEcceeEEEEEEc-----CCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHh
Q 012358 67 MNDSRLNVGLALTAALAG---AAVLNHAEVISLIKD-----EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR 138 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~G---a~i~~~t~V~~i~~~-----~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~ 138 (465)
+.-..+...|.+.+.+.+ ++++..++|+++..+ +++ ..+.|++. +|+ +++|+.||-|-|.+| .++
T Consensus 114 i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~-~~v~v~~~---~g~--~i~a~llVgADG~~S-~vR 186 (437)
T TIGR01989 114 IENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS-NWVHITLS---DGQ--VLYTKLLIGADGSNS-NVR 186 (437)
T ss_pred EEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC-CceEEEEc---CCC--EEEeeEEEEecCCCC-hhH
Confidence 444557777888777765 899999999999752 111 12345543 355 799999999999997 566
Q ss_pred hhhcCCC
Q 012358 139 KLADQNV 145 (465)
Q Consensus 139 ~~~g~~~ 145 (465)
+.+|+..
T Consensus 187 ~~~gi~~ 193 (437)
T TIGR01989 187 KAANIDT 193 (437)
T ss_pred HHcCCCc
Confidence 7777653
No 175
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=88.60 E-value=1.6 Score=47.00 Aligned_cols=69 Identities=22% Similarity=0.195 Sum_probs=52.4
Q ss_pred HHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEEEECCCC-cEEEEEccEEEEccCCC-hHHHhhhhcC
Q 012358 73 NVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSG-KEFDTYAKVVVNAAGPF-CDSVRKLADQ 143 (465)
Q Consensus 73 ~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg-~~~~i~a~~VVnAaG~w-a~~l~~~~g~ 143 (465)
..+++..|.+++ .+|++++.|+.|..+++ +.++|++.....+ .+..+.++.||+|||.+ +.+|+...|+
T Consensus 205 ~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~--r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgi 276 (542)
T COG2303 205 ARAYLKPALKRPNLTLLTGARVRRILLEGD--RAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGI 276 (542)
T ss_pred hhhcchhHhcCCceEEecCCEEEEEEEECC--eeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCC
Confidence 455666677776 89999999999999874 7888888753222 35567899999999998 6777766664
No 176
>PRK05868 hypothetical protein; Validated
Probab=88.60 E-value=6.3 Score=40.06 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=41.2
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhh
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 141 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~ 141 (465)
++..+...|++++.+++|++++.+++ . +.|.+.| |+ +++||.||-|-|.+| .+++.+
T Consensus 110 ~l~~~~~~~v~i~~~~~v~~i~~~~~--~-v~v~~~d---g~--~~~adlvIgADG~~S-~vR~~~ 166 (372)
T PRK05868 110 LLYGATQPSVEYLFDDSISTLQDDGD--S-VRVTFER---AA--AREFDLVIGADGLHS-NVRRLV 166 (372)
T ss_pred HHHHhccCCcEEEeCCEEEEEEecCC--e-EEEEECC---CC--eEEeCEEEECCCCCc-hHHHHh
Confidence 33445567999999999999987543 2 3355543 54 689999999999997 555554
No 177
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=88.59 E-value=9.4 Score=38.76 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=49.9
Q ss_pred EchhHHHHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 67 MNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
+.-..|...|.+.+.+.+ ++++..++|+++..+++ . +.|.+. +. +++||.||-|-|.+| .+++.++..
T Consensus 101 v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~--~-v~v~~~----~~--~~~adlvIgADG~~S-~vR~~l~~~ 169 (374)
T PRK06617 101 VKNSDFKKILLSKITNNPLITLIDNNQYQEVISHND--Y-SIIKFD----DK--QIKCNLLIICDGANS-KVRSHYFAN 169 (374)
T ss_pred EEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCC--e-EEEEEc----CC--EEeeCEEEEeCCCCc-hhHHhcCCC
Confidence 445568888888887775 88999999999987654 3 235542 22 799999999999996 455666543
No 178
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=86.93 E-value=1.6 Score=43.95 Aligned_cols=47 Identities=23% Similarity=0.263 Sum_probs=34.0
Q ss_pred CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 84 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 84 Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
-..++.+++|+++...++| + +.+.+.+..+++..++.+|.||.|||.
T Consensus 293 ~~~l~~~~~v~~~~~~~~~-~-~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDG-G-VRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp -SEEETTEEEEEEEEES-S-S-EEEEEEETTT--EEEEEESEEEE---E
T ss_pred CeEEeCCCEEEEEEECCCC-E-EEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 4889999999999987743 2 567888877888889999999999995
No 179
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=86.68 E-value=0.82 Score=44.97 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=46.0
Q ss_pred CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh---HHHhhhhcCC
Q 012358 84 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC---DSVRKLADQN 144 (465)
Q Consensus 84 Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa---~~l~~~~g~~ 144 (465)
=++|..+++|++|..++ | +|.||...|. +|+...+.++.||.|+|-++ +++++..+++
T Consensus 159 ~~ki~~nskvv~il~n~-g-kVsgVeymd~-sgek~~~~~~~VVlatGGf~ysd~~lLKey~pe 219 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNN-G-KVSGVEYMDA-SGEKSKIIGDAVVLATGGFGYSDKELLKEYGPE 219 (477)
T ss_pred HHhhhhcceeeeeecCC-C-eEEEEEEEcC-CCCccceecCceEEecCCcCcChHHHHHHhChh
Confidence 47889999999999765 5 8999999874 67777899999999999875 4555555543
No 180
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=86.64 E-value=2.7 Score=40.76 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=41.2
Q ss_pred HHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 76 LALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 76 l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+.+.+.+. |++++.++.|+++..++ ++.++.+.+..+|+..++.+|.||.|+|.-.
T Consensus 182 ~~~~l~~~~gv~~~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 182 LLDRLRKNPNIEFLWNSTVKEIVGDN---KVEGVKIKNTVTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred HHHHHHhCCCeEEEeccEEEEEEccC---cEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence 34445566 99999999999997532 5666776654456666899999999999644
No 181
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=86.41 E-value=3.5 Score=42.37 Aligned_cols=63 Identities=25% Similarity=0.242 Sum_probs=49.9
Q ss_pred chhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhh
Q 012358 68 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 141 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~ 141 (465)
.|.++.....+...++|++|.+++.|+++..+ +|.+.+ |++ +|.|+.||=|||.-+..+.+.+
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~---g~~-~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPD-------GVTLKD---GEE-EIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECCC-------cEEEcc---CCe-eEecCEEEEcCCCcCChhhhhc
Confidence 46677766666778999999999999999642 366653 543 6999999999999999998764
No 182
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=86.41 E-value=1.4 Score=45.13 Aligned_cols=54 Identities=22% Similarity=0.079 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 74 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 74 ~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..+++...++|++|+.+++|++|..+++ ++. +.+.. +|+ ++.||.||.|+-++.
T Consensus 201 ~~l~~~l~~~g~~i~~~~~V~~i~~~~~--~~~-~~~~~--~g~--~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 201 EPARRWLDSRGGEVRLGTRVRSIEANAG--GIR-ALVLS--GGE--TLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHcCCEEEcCCeeeEEEEcCC--cce-EEEec--CCc--cccCCEEEEcCCHHH
Confidence 4466667788999999999999998764 332 22221 243 689999999987764
No 183
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=85.92 E-value=3.1 Score=36.68 Aligned_cols=42 Identities=31% Similarity=0.392 Sum_probs=29.7
Q ss_pred CCCEEE-cceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 83 AGAAVL-NHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 83 ~Ga~i~-~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
.|++|. ...+|+++...+++ +.|.+. +|. .+.+|.||+|+|-
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~---~~v~~~---~g~--~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDG---YRVVTA---DGQ--SIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCc---EEEEEC---CCC--EEEeCEEEECCCC
Confidence 465553 46789999987653 445554 354 6899999999994
No 184
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=85.71 E-value=2.3 Score=43.37 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 71 RLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 71 rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
.+...|...+.+ .|++++.+++|++++.+++ . +.|++. +|. +++||.||.|.|.+| .+++.++..
T Consensus 111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~--~-~~v~~~---~g~--~~~~~lvIgADG~~S-~vR~~~gi~ 176 (384)
T PRK08849 111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSAE--G-NRVTLE---SGA--EIEAKWVIGADGANS-QVRQLAGIG 176 (384)
T ss_pred HHHHHHHHHHHhCCCeEEECCCceeEEEEcCC--e-EEEEEC---CCC--EEEeeEEEEecCCCc-hhHHhcCCC
Confidence 455566666544 4799999999999988654 3 235554 354 799999999999997 555666653
No 185
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=85.60 E-value=3.5 Score=43.41 Aligned_cols=60 Identities=18% Similarity=0.088 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCCE--EEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALAGAA--VLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~--i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.+..-|...|...|.. |..+++|+++...++ -|.|++.+. .+...+..+|.||+|+|.++
T Consensus 112 ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~---~w~V~~~~~-~~~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 112 EVLAYLQDFAREFKIEEMVRFETEVVRVEPVDG---KWRVQSKNS-GGFSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred HHHHHHHHHHHHcCCcceEEecCEEEEEeecCC---eEEEEEEcC-CCceEEEEcCEEEEeccCCC
Confidence 3444455566778987 889999999987642 366777642 22333568999999999864
No 186
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=85.18 E-value=3.4 Score=43.02 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcC
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQ 143 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~ 143 (465)
..+...+.+...++|++++.+++|+++..+ + ++..+.+. +. ++.||.||+|+|.+.. .+.+..|.
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~--~-~~~~v~~~----~~--~i~~d~vi~a~G~~p~~~~l~~~gl 256 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIGE--D-KVEGVVTD----KG--EYEADVVIVATGVKPNTEFLEDTGL 256 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEecC--C-cEEEEEeC----CC--EEEcCEEEECcCCCcCHHHHHhcCc
Confidence 456666777778899999999999999643 2 44555432 32 6999999999998754 45554444
No 187
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=85.03 E-value=4.2 Score=41.64 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
..+...|.+.+.+.|+.++.+++++.+...++ .-..|++.+ +|+..+++||.||-|-|.+|. +++.++.
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~--~~~~V~~~~--~g~~~~i~adlvIGADG~~S~-VR~~l~~ 171 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLAG--DRPYVTFER--DGERHRLDCDFIAGCDGFHGV-SRASIPA 171 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEecCC--CccEEEEEE--CCeEEEEEeCEEEECCCCchh-hHHhcCc
Confidence 46777788888888999998888888755222 123566642 365557999999999999984 6666543
No 188
>PRK09897 hypothetical protein; Provisional
Probab=84.85 E-value=2.5 Score=45.25 Aligned_cols=51 Identities=20% Similarity=0.079 Sum_probs=35.4
Q ss_pred HHHHHHhCC--CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 76 LALTAALAG--AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 76 l~~~A~~~G--a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+++.+.+.| +.++..++|+++...++ . +.|.+.+ .| ..+.||.||.|+|-.
T Consensus 113 l~~~a~~~G~~V~v~~~~~V~~I~~~~~--g-~~V~t~~--gg--~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 113 LVDQARQQKFAVAVYESCQVTDLQITNA--G-VMLATNQ--DL--PSETFDLAVIATGHV 165 (534)
T ss_pred HHHHHHHcCCeEEEEECCEEEEEEEeCC--E-EEEEECC--CC--eEEEcCEEEECCCCC
Confidence 455566777 67888889999987653 2 3344322 22 268999999999963
No 189
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=84.71 E-value=3.3 Score=44.23 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=46.7
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..+..+...+.+.+.+.|++++.+++|+++...++ .+.|.+. +|. ++.++.||+|+|...
T Consensus 263 ~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~---~~~V~~~---~g~--~i~a~~vViAtG~~~ 322 (517)
T PRK15317 263 TEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAG---LIEVELA---NGA--VLKAKTVILATGARW 322 (517)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC---eEEEEEC---CCC--EEEcCEEEECCCCCc
Confidence 35667888888889999999999999999987542 2455553 354 699999999999843
No 190
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=84.23 E-value=4.5 Score=41.47 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH-HhhhhcC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS-VRKLADQ 143 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~-l~~~~g~ 143 (465)
+..+...+.+...++|++++.+++|+++.. ++ . +.|.+. +|+ ++.||.||+|+|..... +.+..|.
T Consensus 185 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~--~-~~v~l~---~g~--~i~aD~Vv~a~G~~pn~~l~~~~gl 251 (396)
T PRK09754 185 PPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GE--K-VELTLQ---SGE--TLQADVVIYGIGISANDQLAREANL 251 (396)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CC--E-EEEEEC---CCC--EEECCEEEECCCCChhhHHHHhcCC
Confidence 445556677777889999999999999965 32 2 335543 354 69999999999998653 4444443
No 191
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=84.18 E-value=4.9 Score=40.68 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
+..+..++-+.....|-.+..+|+|++...+++| .+.|++.+..+++..++.||++.+|.|-
T Consensus 251 D~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg--~v~i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 251 DGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDG--PVEIEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred CHHHHHHHHHHHHhcCceeEeccEEEEeeccCCC--ceEEEEEecCCCceeEEEeeEEEEEccC
Confidence 3456677777777899999999999999988764 4568888878888889999999999984
No 192
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=84.18 E-value=5 Score=42.22 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
.+...+.+...++|++++.++.|+++..+++ . +.+.+.+..+|+..++.+|.||+|+|.-
T Consensus 216 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 216 ETAKTLQKALTKQGMKFKLGSKVTGATAGAD--G-VSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred HHHHHHHHHHHhcCCEEEECcEEEEEEEcCC--e-EEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 3555666677789999999999999976543 2 2344432223444579999999999975
No 193
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=83.62 E-value=5.1 Score=42.17 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..+...+.+...++|++++.+++|+.+....++ ++..+.+. +|+..++.+|.||+|+|.-.
T Consensus 221 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~-~~~~~~~~---~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 221 AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDG-GVLIVAEH---NGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCC-CEEEEEEe---CCceEEEEeCEEEEeeCCcc
Confidence 345566667778899999999999999752112 33333333 35545799999999999854
No 194
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=83.42 E-value=4.4 Score=42.46 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=42.9
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---------------CCCcEEEEEccEEEEccCCChH
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---------------LSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---------------~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+.+.+.|++|+.++.++.+..+++| ++.+|.+... .+|+..+|.+|.||.|.|.-.+
T Consensus 315 ~~~~l~~~GV~~~~~~~~~~i~~~~~g-~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~ 388 (449)
T TIGR01316 315 EIAHAEEEGVKFHFLCQPVEIIGDEEG-NVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSN 388 (449)
T ss_pred HHHHHHhCCCEEEeccCcEEEEEcCCC-eEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCC
Confidence 345677899999999999999765444 7777776410 0234457999999999998544
No 195
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=83.23 E-value=5.4 Score=41.78 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+...++|++++.+++|+++..+++ . +.+.+.+ .|+..++.+|.||+|+|....
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~-v~v~~~~--gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTDD--G-VTVTLED--GGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC--E-EEEEEEe--CCeeEEEEeCEEEEeeCCccC
Confidence 34556666677889999999999999987543 2 2344443 233347999999999998643
No 196
>PRK06116 glutathione reductase; Validated
Probab=83.21 E-value=4.3 Score=42.40 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..+...+.+...++|++++.+++|.++..++++ . ..|.+. +|+ ++.+|.||.|+|.-.
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g-~-~~v~~~---~g~--~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADG-S-LTLTLE---DGE--TLTVDCLIWAIGREP 265 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCc-e-EEEEEc---CCc--EEEeCEEEEeeCCCc
Confidence 345566777778899999999999999875432 2 234443 354 699999999999753
No 197
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.12 E-value=2.4 Score=43.19 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=40.5
Q ss_pred CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 83 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 83 ~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
..+.++..++|..++..++| + ..+.+....+|+.+++.+|.||.|||.-
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g-~-~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDG-R-YRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CCeeeccccceeeeecCCCc-e-EEEEEeeccCCCceEEEeeEEEEecccc
Confidence 46788999999999988765 4 5566666667888899999999999986
No 198
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=82.98 E-value=1.8 Score=40.51 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=47.4
Q ss_pred cCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 63 YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 63 ~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
|||..- ..|+.-+.+.+.+.|.+|+..+ |..+.... +.+.+.+. .+ .+.||.||.|+|+-+.++
T Consensus 64 Pdgi~G-~~l~d~mrkqs~r~Gt~i~tEt-Vskv~~ss---kpF~l~td---~~---~v~~~avI~atGAsAkRl 127 (322)
T KOG0404|consen 64 PDGITG-PELMDKMRKQSERFGTEIITET-VSKVDLSS---KPFKLWTD---AR---PVTADAVILATGASAKRL 127 (322)
T ss_pred Cccccc-HHHHHHHHHHHHhhcceeeeee-hhhccccC---CCeEEEec---CC---ceeeeeEEEecccceeee
Confidence 444433 4578889999999999998754 88887754 44555542 22 699999999999987766
No 199
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=82.87 E-value=5.3 Score=41.54 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 72 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 72 l~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+.....+...+.|++++.+++|+++..+++ .|.+.+..+|...++.+|++|+|+|..
T Consensus 58 ~~~~~~~~~~~~gv~~~~~~~V~~id~~~~-----~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 58 MIARTPEEFIKSGIDVKTEHEVVKVDAKNK-----TITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred hhcCCHHHHHHCCCeEEecCEEEEEECCCC-----EEEEEECCCCCEEEecCCEEEECCCCC
Confidence 333344556678999998999999987542 355544223443345599999999985
No 200
>PRK12831 putative oxidoreductase; Provisional
Probab=82.59 E-value=4 Score=42.97 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=41.8
Q ss_pred HHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---------------CCCcEEEEEccEEEEccCCChH
Q 012358 78 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---------------LSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 78 ~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---------------~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+.+.+.|+++++.+.++.+..+++| ++.+|++... .+|++.+|.||.||.|.|.-.+
T Consensus 326 ~~a~~eGV~i~~~~~~~~i~~~~~g-~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 397 (464)
T PRK12831 326 HHAKEEGVIFDLLTNPVEILGDENG-WVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPN 397 (464)
T ss_pred HHHHHcCCEEEecccceEEEecCCC-eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCC
Confidence 4567889999999999999765445 7777766410 0344557999999999997644
No 201
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.53 E-value=4.6 Score=43.14 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=45.5
Q ss_pred chhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 68 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.+..+...+.+.+.+.|++++.+++|+++..+++ .+.|.+. +|+ .+.++.||+|+|...
T Consensus 265 ~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~---~~~v~~~---~g~--~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 265 TGSQLAANLEEHIKQYPIDLMENQRAKKIETEDG---LIVVTLE---SGE--VLKAKSVIVATGARW 323 (515)
T ss_pred CHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCC---eEEEEEC---CCC--EEEeCEEEECCCCCc
Confidence 4567788888888889999999999999987542 2445543 354 699999999999863
No 202
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=82.38 E-value=3.7 Score=42.33 Aligned_cols=63 Identities=8% Similarity=0.111 Sum_probs=43.5
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL 140 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~ 140 (465)
++-..|...|.+.+. ...++.+++|+++...++ . +.|.+.+ |. ++.||.||.|.|.||. +++.
T Consensus 102 i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~--~-~~v~~~~---g~--~~~ad~vVgADG~~S~-vR~~ 164 (414)
T TIGR03219 102 VHRADFLDALLKHLP--EGIASFGKRATQIEEQAE--E-VQVLFTD---GT--EYRCDLLIGADGIKSA-LRDY 164 (414)
T ss_pred CCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCC--c-EEEEEcC---CC--EEEeeEEEECCCccHH-HHHH
Confidence 445567777776542 345778999999987654 2 4455543 54 6999999999999984 4443
No 203
>PLN02785 Protein HOTHEAD
Probab=82.27 E-value=5.1 Score=43.54 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=47.2
Q ss_pred HHHHHhCCCEEEcceeEEEEEEcCCC--CeEEEEEEEECCCCcEEEE-----EccEEEEccCC-ChHHHhhhhcCC
Q 012358 77 ALTAALAGAAVLNHAEVISLIKDEAS--NRIIGARIRNNLSGKEFDT-----YAKVVVNAAGP-FCDSVRKLADQN 144 (465)
Q Consensus 77 ~~~A~~~Ga~i~~~t~V~~i~~~~~g--~~v~gV~~~d~~tg~~~~i-----~a~~VVnAaG~-wa~~l~~~~g~~ 144 (465)
...+...+.+|+.++.|+.|..++++ .+++||++.+. .|...++ .++-||+|||+ .+++|+..-|+-
T Consensus 227 ~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~-~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIG 301 (587)
T PLN02785 227 LAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDE-NGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIG 301 (587)
T ss_pred HhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEEC-CCceEEEEeecccCceEEecccccCCHHHHHHcCCC
Confidence 34445678999999999999886421 16899998763 3443333 34789999997 577887766654
No 204
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=82.25 E-value=6.3 Score=41.35 Aligned_cols=59 Identities=15% Similarity=0.078 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+...+.|++++.+++|+.+..+++ .+.+.+ +|+..++.+|.||+|+|.-..
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~-----~v~~~~--~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYKK-----QALFEY--EGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCC-----EEEEEE--CCceEEEEeCEEEEecCCccC
Confidence 44666677777889999999999999976432 233332 344447999999999996543
No 205
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=82.04 E-value=4.3 Score=42.50 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+...++|++++.+++|+.+..+++ . +.+.+. +|+ ++.+|.||+|+|....
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~--~-~~v~~~---~g~--~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDD--G-VIVHLK---SGK--KIKADCLLYANGRTGN 273 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCC--e-EEEEEC---CCC--EEEeCEEEEeecCCcc
Confidence 44667777788889999999999999986543 2 223332 354 6999999999998754
No 206
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=81.96 E-value=4.6 Score=42.52 Aligned_cols=59 Identities=25% Similarity=0.267 Sum_probs=42.3
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---------------CCCcEEEEEccEEEEccCCChH
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---------------LSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---------------~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.++.+.+.|++++.++.++.|..+++| ++.+|++... .+|+..++.||.||.|.|.-.+
T Consensus 326 e~~~~~~~GV~~~~~~~~~~i~~~~~g-~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 399 (467)
T TIGR01318 326 EVANAREEGVEFLFNVQPVYIECDEDG-RVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPH 399 (467)
T ss_pred HHHHHHhcCCEEEecCCcEEEEECCCC-eEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCC
Confidence 335567899999999999999765444 6777765311 1244568999999999996543
No 207
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=81.91 E-value=6.3 Score=41.25 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+...++|++++.+++|+++..+++ .+. +.+. +|+..++.+|.||+|+|....
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~--~v~-v~~~---~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDD--QVV-YENK---GGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC--EEE-EEEe---CCcEEEEEeCEEEEecCCccc
Confidence 34556667777889999999999999987543 332 4332 343347999999999997653
No 208
>PRK06475 salicylate hydroxylase; Provisional
Probab=81.72 E-value=7.4 Score=39.88 Aligned_cols=70 Identities=20% Similarity=0.119 Sum_probs=48.0
Q ss_pred chhHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 68 NDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 68 dp~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
.-..|...|.+.+.. .|++++.+++|+++..+++ . +.|++.+..++ .++.||.||-|-|.+| .+++.++.
T Consensus 105 ~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~--~-v~v~~~~~~~~--~~~~adlvIgADG~~S-~vR~~~~~ 175 (400)
T PRK06475 105 HRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGN--S-ITATIIRTNSV--ETVSAAYLIACDGVWS-MLRAKAGF 175 (400)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCC--c-eEEEEEeCCCC--cEEecCEEEECCCccH-hHHhhcCC
Confidence 344677777777765 4899999999999987653 3 33444332122 2689999999999997 44555543
No 209
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=81.71 E-value=4.6 Score=44.54 Aligned_cols=59 Identities=24% Similarity=0.223 Sum_probs=43.5
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---------------CCCcEEEEEccEEEEccCCChH
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---------------LSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---------------~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.++.+.+.|++++.++.++.|..+++| ++.+|++... .+|++++|.+|.||.|.|.-.+
T Consensus 512 e~~~~~~~Gv~~~~~~~~~~i~~~~~g-~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 585 (654)
T PRK12769 512 EVKNAREEGANFEFNVQPVALELNEQG-HVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH 585 (654)
T ss_pred HHHHHHHcCCeEEeccCcEEEEECCCC-eEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence 456678899999999999998764445 7878876321 1345568999999999997544
No 210
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.63 E-value=5.4 Score=42.56 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=39.7
Q ss_pred CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 83 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 83 ~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.|++++.++.|+.+..++ + ++.+|.+.+..+|+..++.||.||+|+|.-.
T Consensus 401 ~gV~i~~~~~v~~i~~~~-~-~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDG-D-KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred CCCEEEECCeeEEEEcCC-C-EEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 699999999999997654 3 6777888764445555799999999999754
No 211
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=81.50 E-value=1.7 Score=44.13 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 72 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 72 l~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+...+...+...|.+|+.+++|+.|..+++ ++. |.+. +|+ ++.||.||.|+.+..
T Consensus 211 ~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~--~v~-v~~~---~g~--~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 211 LSLALALAAEELGGEIRLNTPVTRIEREDG--GVT-VTTE---DGE--TIEADAVISAVPPSV 265 (450)
T ss_dssp THHHHHHHHHHHGGGEESSEEEEEEEEESS--EEE-EEET---TSS--EEEESEEEE-S-HHH
T ss_pred hhHHHHHHHhhcCceeecCCcceecccccc--ccc-cccc---cce--EEecceeeecCchhh
Confidence 344455555667889999999999999874 433 4443 354 799999999998754
No 212
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=80.95 E-value=4.5 Score=42.67 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=46.0
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---------CCCcEEEEEccEEEEccCCChH--HHhhhhcC
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---------LSGKEFDTYAKVVVNAAGPFCD--SVRKLADQ 143 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---------~tg~~~~i~a~~VVnAaG~wa~--~l~~~~g~ 143 (465)
..+.+.+.|++++.++.++.|..++ | ++.+|++... ..|+..+|.+|.||.|+|.-.+ .+.+.+|.
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~~-g-~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl 411 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGEN-G-KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGV 411 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEccC-C-EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCc
Confidence 3456778899999999999997544 4 7877765421 1245568999999999996543 35444443
No 213
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=80.73 E-value=8.5 Score=40.42 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..+...+.+...++|++++.+++|+.+..+++ . ..+.+.. .+|+..++.+|.||.|+|.-.
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~-~~v~~~~-~~g~~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNGS--K-VTVTVSK-KDGKAQELEADKVLQAIGFAP 273 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC--e-EEEEEEe-cCCCeEEEEeCEEEECcCccc
Confidence 34566677777889999999999999976542 2 3344431 135445799999999999643
No 214
>PRK06370 mercuric reductase; Validated
Probab=80.59 E-value=7.3 Score=40.88 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.+...+.+...++|++++.+++|.++...++ . ..|.+.. ++...++.+|.||.|+|.-.
T Consensus 213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~--~-~~v~~~~--~~~~~~i~~D~Vi~A~G~~p 271 (463)
T PRK06370 213 DVAAAVREILEREGIDVRLNAECIRVERDGD--G-IAVGLDC--NGGAPEITGSHILVAVGRVP 271 (463)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--E-EEEEEEe--CCCceEEEeCEEEECcCCCc
Confidence 4555666667789999999999999987543 2 2344432 12234799999999999643
No 215
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=80.48 E-value=4.3 Score=42.12 Aligned_cols=56 Identities=18% Similarity=0.116 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 72 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 72 l~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+-..+.....++|++++..+.+.++..+.+| ++..|.+.| |. ++.||.||...|+-
T Consensus 257 i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~G-ev~~V~l~d---g~--~l~adlvv~GiG~~ 312 (478)
T KOG1336|consen 257 IGQFYEDYYENKGVKFYLGTVVSSLEGNSDG-EVSEVKLKD---GK--TLEADLVVVGIGIK 312 (478)
T ss_pred HHHHHHHHHHhcCeEEEEecceeecccCCCC-cEEEEEecc---CC--EeccCeEEEeeccc
Confidence 4455556667899999999999999887766 888898875 65 79999999999974
No 216
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=80.37 E-value=6.8 Score=40.82 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
..+...+.+...++|++++.+++|+++..+++ . +.+... .+ ++.+|.||+|+|.+...
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~--~---v~v~~~-~g---~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHEN--Q---VQVHSE-HA---QLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--E---EEEEEc-CC---eEEeCEEEEeecCCcCC
Confidence 45666777778889999999999999987542 2 333321 23 58999999999998653
No 217
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=80.26 E-value=3.1 Score=44.84 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 69 DSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 69 p~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
...+...|.+.+.+ ++.+++++..|+++..++++ .+.||...+..+|+-..++++.||.|+|...
T Consensus 137 G~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~-~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 137 GHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGG-GVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred cHHHHHHHHHHHHHhhcchhhhhhhhhhheecCCC-cEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 45588889988877 77899999999999887653 5888888777788877889999999998876
No 218
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=79.88 E-value=8.1 Score=40.51 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
.+...+.+...+.|++++.+++|+.+..+++ ...+.+.+ ++...++.+|.||.|+|.-
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~---~~~v~~~~--~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 208 EISAAVEEALAEEGIEVVTSAQVKAVSVRGG---GKIITVEK--PGGQGEVEADELLVATGRR 265 (463)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC---EEEEEEEe--CCCceEEEeCEEEEeECCC
Confidence 3555566667789999999999999987542 23454432 2223479999999999954
No 219
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=79.77 E-value=5.3 Score=43.94 Aligned_cols=56 Identities=21% Similarity=0.266 Sum_probs=41.1
Q ss_pred HHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---------------CCCcEEEEEccEEEEccCCCh
Q 012358 78 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---------------LSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 78 ~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---------------~tg~~~~i~a~~VVnAaG~wa 134 (465)
..+.+.|++++..+.++.|..+++| ++.+|.+... ..|++++|.||.||.|.|.-.
T Consensus 497 ~~a~~eGv~~~~~~~~~~i~~~~~g-~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p 567 (639)
T PRK12809 497 VNAREEGVEFQFNVQPQYIACDEDG-RLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQA 567 (639)
T ss_pred HHHHHcCCeEEeccCCEEEEECCCC-eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCC
Confidence 3567889999999999999765444 7777754211 124556899999999999543
No 220
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=79.73 E-value=8.6 Score=40.52 Aligned_cols=62 Identities=6% Similarity=0.054 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+...++|++++.+++|+.+..+++ .+ .+.+.+. +|+..++.+|.||+|+|.-..
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~--~v-~v~~~~~-~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGK--GV-SVAYTDA-DGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCC--EE-EEEEEeC-CCceeEEEcCEEEEccCCccC
Confidence 44566666777789999999999999986543 32 3554442 354457999999999997543
No 221
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=79.29 E-value=4.3 Score=42.43 Aligned_cols=72 Identities=22% Similarity=0.199 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhc
Q 012358 69 DSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 142 (465)
Q Consensus 69 p~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g 142 (465)
...+..+|.+.+.+ -+.++++++.+.++..+++. .+.||.+.+.. ++...+.|+.||+|||--..-.....+
T Consensus 132 G~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~-~~~Gv~~~~~~-~~~~~~~a~~vVLATGG~g~ly~~TTN 204 (518)
T COG0029 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI-GVAGVLVLNRN-GELGTFRAKAVVLATGGLGGLYAYTTN 204 (518)
T ss_pred cHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc-eEeEEEEecCC-CeEEEEecCeEEEecCCCcccccccCC
Confidence 44577778877765 59999999999999887642 35599887632 245689999999999987655544433
No 222
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=79.20 E-value=5.3 Score=41.62 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=36.2
Q ss_pred HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 81 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 81 ~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.+.|++++.+++|++|..+++ .|.+.+..+++..++.+|++|+|+|...
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~~-----~v~~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDERQ-----TVTVLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred HhCCCEEEeCCEEEEEECCCC-----EEEEEECCCCcEEeeecCEEEECCCCCC
Confidence 457999998999999987652 3555543234445689999999999864
No 223
>PRK14727 putative mercuric reductase; Provisional
Probab=78.69 E-value=8.8 Score=40.54 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
.+...+.+...+.|++++.+++|+.+..+++ . +.+... .+ ++.||.||.|+|.+.+.
T Consensus 229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~--~---~~v~~~-~g---~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 229 LLGETLTACFEKEGIEVLNNTQASLVEHDDN--G---FVLTTG-HG---ELRAEKLLISTGRHANT 285 (479)
T ss_pred HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCC--E---EEEEEc-CC---eEEeCEEEEccCCCCCc
Confidence 4556667777889999999999999976543 2 233221 23 58999999999998753
No 224
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=78.55 E-value=3.9 Score=40.54 Aligned_cols=61 Identities=23% Similarity=0.189 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.-|+-..|.+..++.|+.+.+.-+|.+....+ | +|..|-++. .....++|+..|.|+|.+-
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~-~v~~i~trn---~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKG-G-RVTEIYTRN---HADIPLRADFYVLASGSFF 317 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeeeC-C-eEEEEEecc---cccCCCChhHeeeeccccc
Confidence 44777888889999999999999999998876 4 888888874 5556899999999999863
No 225
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=78.49 E-value=7 Score=29.97 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEE
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRN 112 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d 112 (465)
+..+...+.+...+.|+++++++.|.++..+++ ++. |+++|
T Consensus 39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~--~~~-V~~~~ 79 (80)
T PF00070_consen 39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD--GVE-VTLED 79 (80)
T ss_dssp SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT--SEE-EEEET
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC--EEE-EEEec
Confidence 455666777788899999999999999998875 455 77764
No 226
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=78.18 E-value=7.8 Score=41.09 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+..+...+.+...++|++++.++.|+.+..+++ ....|.+. +|+ ++.+|.||.|+|.-.
T Consensus 230 d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~--~~~~v~~~---~g~--~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 230 DSTLRKELTKQLRANGINIMTNENPAKVTLNAD--GSKHVTFE---SGK--TLDVDVVMMAIGRVP 288 (486)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC--ceEEEEEc---CCC--EEEcCEEEEeeCCCc
Confidence 345667777777889999999999999986543 23345543 244 699999999999653
No 227
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=77.92 E-value=3.5 Score=41.66 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=43.8
Q ss_pred CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 64 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 64 dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.|.+++..+...+.+.+.+.|++++. .+|++|..+++ .|.+. +|+ ++..|++|+|+|.-.
T Consensus 48 ~g~~~~~~~~~~~~~~~~~~gv~~~~-~~v~~id~~~~-----~V~~~---~g~--~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 48 AGHYSLDEIRIDLRRLARQAGARFVI-AEATGIDPDRR-----KVLLA---NRP--PLSYDVLSLDVGSTT 107 (364)
T ss_pred heeCCHHHhcccHHHHHHhcCCEEEE-EEEEEEecccC-----EEEEC---CCC--cccccEEEEccCCCC
Confidence 45566666666666667788999886 58999987642 35554 354 699999999999754
No 228
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=77.31 E-value=8 Score=38.31 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=49.4
Q ss_pred CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 64 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 64 dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
++.+....|...+.+.+...|+++.. ..|..+...+ ..+.|.+. +| +++|+.||+|+|.-...+
T Consensus 55 ~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~---~~F~v~t~---~~---~~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 55 PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG---GPFKVKTD---KG---TYEAKAVIIATGAGARKL 118 (305)
T ss_pred ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC---ceEEEEEC---CC---eEEEeEEEECcCCcccCC
Confidence 45577788999999999999999886 7788887643 24556654 24 499999999999976555
No 229
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=76.87 E-value=8.8 Score=40.27 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCC--ChHHH-hhhhcC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP--FCDSV-RKLADQ 143 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~--wa~~l-~~~~g~ 143 (465)
+..+...+.+...+.|..++++++|+.++..++ . ..+.+.+ |+..++.+|.|+.|+|= .++.+ ++.+|+
T Consensus 213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~--~-v~v~~~~---g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv 284 (454)
T COG1249 213 DPEISKELTKQLEKGGVKILLNTKVTAVEKKDD--G-VLVTLED---GEGGTIEADAVLVAIGRKPNTDGLGLENAGV 284 (454)
T ss_pred CHHHHHHHHHHHHhCCeEEEccceEEEEEecCC--e-EEEEEec---CCCCEEEeeEEEEccCCccCCCCCChhhcCc
Confidence 566777788887778899999999999987653 3 4566654 43337999999999994 45544 344444
No 230
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=76.86 E-value=8.3 Score=40.26 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..+...+.+...++|++++.+++|+++...++ . ..|.+. +|+ ++.+|.||.|+|.-.
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~-~~v~~~---~g~--~i~~D~viva~G~~p 263 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDD--G-LKVTLS---HGE--EIVADVVLFATGRSP 263 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--e-EEEEEc---CCc--EeecCEEEEeeCCCc
Confidence 34555566677789999999999999976543 2 234433 243 699999999999754
No 231
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=76.62 E-value=7.8 Score=40.62 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=41.6
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC--------------CCCcEEEEEccEEEEccCCChH
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN--------------LSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~--------------~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+.+.+.|++++.++.|+.+..+++ ++.+|.+... .+|+..+|.||.||.|.|.-.+
T Consensus 317 ~~~~~~~~GV~i~~~~~v~~i~~~~~--~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 317 EVEHAKEEGVEFEWLAAPVEILGDEG--RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPN 388 (457)
T ss_pred HHHHHHHCCCEEEecCCcEEEEecCC--ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCC
Confidence 34567789999999999999976543 4456665321 1244457999999999997654
No 232
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=76.55 E-value=8.8 Score=41.40 Aligned_cols=59 Identities=24% Similarity=0.187 Sum_probs=43.3
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+.+..++..+.+.+.+.|++++ +++|+++..++ ..+.|.+. +| ++.++.||+|+|.+..
T Consensus 57 ~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~---~~~~V~~~---~g---~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 57 TTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDG---DIKTIKTA---RG---DYKTLAVLIATGASPR 115 (555)
T ss_pred CCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecC---CEEEEEec---CC---EEEEeEEEECCCCccC
Confidence 3456777888888888999986 57899987653 33445543 23 5899999999999753
No 233
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=76.52 E-value=9.4 Score=40.77 Aligned_cols=50 Identities=14% Similarity=0.257 Sum_probs=40.9
Q ss_pred CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 83 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 83 ~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.|++++.++.|+++..++ + ++.+|.+.+..+|+..++.+|.|+.|.|.-.
T Consensus 400 ~gI~i~~~~~v~~i~~~~-g-~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDG-D-KVTGLTYKDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred CCcEEEECcEEEEEEcCC-C-cEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence 599999999999998654 3 7778888765556666899999999999864
No 234
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=74.87 E-value=8.9 Score=42.23 Aligned_cols=54 Identities=17% Similarity=0.336 Sum_probs=37.9
Q ss_pred CCCE-EEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 83 AGAA-VLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 83 ~Ga~-i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
.|.. ++++++|+++...++ .+. |.+.+ |+ ++.+|.||.|.|.||..-..+++..
T Consensus 204 lg~~~i~~g~~V~~I~~~~d--~Vt-V~~~d---G~--ti~aDlVVGADG~~S~vR~~l~g~~ 258 (668)
T PLN02927 204 VGEDVIRNESNVVDFEDSGD--KVT-VVLEN---GQ--RYEGDLLVGADGIWSKVRNNLFGRS 258 (668)
T ss_pred CCCCEEEcCCEEEEEEEeCC--EEE-EEECC---CC--EEEcCEEEECCCCCcHHHHHhcCCC
Confidence 3443 567889999987653 433 55442 44 6899999999999997665665543
No 235
>PRK10262 thioredoxin reductase; Provisional
Probab=74.22 E-value=13 Score=36.82 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECC-CCcEEEEEccEEEEccCCChHH
Q 012358 72 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL-SGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 72 l~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~-tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
+...+.+...+.|++++.++.|+++..++ + ++.+|++.+.. .++..++.+|.||.|+|.-.+.
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~~-~-~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~ 250 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGDQ-M-GVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNT 250 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcCC-c-cEEEEEEEEcCCCCeEEEEECCEEEEEeCCccCh
Confidence 34445555567899999999999997654 2 56677776532 2333479999999999986543
No 236
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=73.69 E-value=14 Score=38.49 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=44.6
Q ss_pred EEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEc
Q 012358 59 AVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNA 129 (465)
Q Consensus 59 a~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnA 129 (465)
.+.||-.. ...+..++.|.+.-.|+....++.|.+|..+.+| ++.+|.. .|+ .++|+.||-.
T Consensus 223 PfLyP~YG--~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g-~~~gV~s----~ge--~v~~k~vI~d 284 (438)
T PF00996_consen 223 PFLYPLYG--LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDG-KVIGVKS----EGE--VVKAKKVIGD 284 (438)
T ss_dssp SEEEETT---TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTT-EEEEEEE----TTE--EEEESEEEEE
T ss_pred CEEEEccC--CccHHHHHHHHhhhcCcEEEeCCccceeeeecCC-eEEEEec----CCE--EEEcCEEEEC
Confidence 34555322 2489999999999999999999999999886556 7888763 365 7999999943
No 237
>PRK14694 putative mercuric reductase; Provisional
Probab=73.58 E-value=14 Score=38.75 Aligned_cols=58 Identities=10% Similarity=0.081 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
..+...+.+...++|++++.++.|..+..+++ . +.+.+ ++. ++.+|.||.|+|.+...
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~--~-~~v~~----~~~--~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNGR--E-FILET----NAG--TLRAEQLLVATGRTPNT 275 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--E-EEEEE----CCC--EEEeCEEEEccCCCCCc
Confidence 45666777777889999999999999976542 2 22332 122 59999999999988653
No 238
>PLN02676 polyamine oxidase
Probab=73.38 E-value=7.4 Score=41.25 Aligned_cols=56 Identities=14% Similarity=0.005 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhC------CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALA------GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~------Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.++..|++..... +..|+.+++|++|...++| +.|.+. +|+ ++.||+||+|..+..
T Consensus 225 ~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~g---V~V~~~---~G~--~~~a~~VIvtvPl~v 286 (487)
T PLN02676 225 SLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNG---VTVKTE---DGS--VYRAKYVIVSVSLGV 286 (487)
T ss_pred HHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCc---EEEEEC---CCC--EEEeCEEEEccChHH
Confidence 3455555544322 3679999999999887642 234433 354 699999999998654
No 239
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=73.07 E-value=15 Score=38.24 Aligned_cols=56 Identities=11% Similarity=0.045 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.+...+.+...++|++++.+++|+.+..+++ . +.+.+ +|+ ++.+|.||.|+|.-..
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~--~---v~v~~--~g~--~i~~D~viva~G~~p~ 254 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKNDGD--Q---VLVVT--EDE--TYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEecCC--E---EEEEE--CCe--EEEcCEEEEeeCCCCC
Confidence 3444455566788999999999999976542 2 23332 343 6999999999998643
No 240
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=72.92 E-value=12 Score=37.82 Aligned_cols=64 Identities=23% Similarity=0.151 Sum_probs=39.5
Q ss_pred EchhH-HHHHHHHHHH-hCCCEEEcceeEEEEEEcCCCC-eEEEEEEEECCCCcEEEEEccEEEEccC
Q 012358 67 MNDSR-LNVGLALTAA-LAGAAVLNHAEVISLIKDEASN-RIIGARIRNNLSGKEFDTYAKVVVNAAG 131 (465)
Q Consensus 67 vdp~r-l~~~l~~~A~-~~Ga~i~~~t~V~~i~~~~~g~-~v~gV~~~d~~tg~~~~i~a~~VVnAaG 131 (465)
..|.| .=..+++.+. +.+..+..+++|++|....+++ ..+.|.+.+ .+|+..++.|+.||+|+|
T Consensus 90 ~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 90 FFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRARNVVLATG 156 (341)
T ss_dssp SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEESEEEE---
T ss_pred CCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeCeEEECcC
Confidence 44554 2244555554 3455477889999998764310 257788766 467677899999999999
No 241
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=72.36 E-value=8.9 Score=39.68 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=33.1
Q ss_pred HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEE--ccEEEEccCCC
Q 012358 81 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTY--AKVVVNAAGPF 133 (465)
Q Consensus 81 ~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~--a~~VVnAaG~w 133 (465)
.+.|++++.+++|+++..+++ .|.+.+..+++ ++. +|.||+|+|..
T Consensus 55 ~~~gv~~~~~~~V~~id~~~~-----~v~~~~~~~~~--~~~~~yd~lIiATG~~ 102 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDERQ-----TVVVRNNKTNE--TYEESYDYLILSPGAS 102 (427)
T ss_pred HhcCCeEEecCEEEEEECCCC-----EEEEEECCCCC--EEecCCCEEEECCCCC
Confidence 678999988899999976542 34554322233 466 99999999984
No 242
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=72.33 E-value=15 Score=38.07 Aligned_cols=64 Identities=20% Similarity=0.109 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcC
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQ 143 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~ 143 (465)
..+...+.+...+.|++++.+++|.++..++ .+ +.+. +|+ ++.+|.||.|+|...+ .+.+..|.
T Consensus 179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~---~~--v~~~---~g~--~i~~D~vi~a~G~~p~~~~l~~~gl 243 (427)
T TIGR03385 179 EEMNQIVEEELKKHEINLRLNEEVDSIEGEE---RV--KVFT---SGG--VYQADMVILATGIKPNSELAKDSGL 243 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEecCC---CE--EEEc---CCC--EEEeCEEEECCCccCCHHHHHhcCc
Confidence 3455566667788999999999999996532 32 3443 354 6999999999998754 44444444
No 243
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=71.81 E-value=11 Score=39.11 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
..+...+.+...++|++++.+++|+.+.. + .|.+.+ |+ ++.+|.||.|+|.-...+.+.++.
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~-----~v~~~~---g~--~i~~d~vi~~~G~~~~~~~~~~~l 289 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K-----EVVLKD---GE--VIPTGLVVWSTGVGPGPLTKQLKV 289 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C-----EEEECC---CC--EEEccEEEEccCCCCcchhhhcCC
Confidence 35566666777889999999999998852 2 255543 65 799999999999766555554443
No 244
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=71.59 E-value=13 Score=41.77 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=42.6
Q ss_pred HHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---------------CCCcEEEEEccEEEEccCCChHH
Q 012358 78 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---------------LSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 78 ~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---------------~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
+.+.+.|+++++++.++.+..+++| ++.+|++... .+|+..++.||.||.|.|.-.+.
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~g-~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~ 688 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEKG-WVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP 688 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCCC-EEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc
Confidence 4577889999999999998765445 7777766310 12445679999999999976543
No 245
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=71.04 E-value=15 Score=38.41 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+...++|++++.++.|+.+..+++ ....|.+. +|+ .++.+|.||.|+|.-.+
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~--~~~~v~~~---~g~-~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVE--GKLVIHFE---DGK-SIDDVDELIWAIGRKPN 266 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCC--ceEEEEEC---CCc-EEEEcCEEEEeeCCCcC
Confidence 34556666777889999999999999976543 22234443 242 36999999999997644
No 246
>PLN02507 glutathione reductase
Probab=70.85 E-value=14 Score=39.33 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+...++|++++.++.|+++...++ . ..+.+. +|+ ++.+|.||.|+|.-.+
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~--~-~~v~~~---~g~--~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEG--G-IKVITD---HGE--EFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCC--e-EEEEEC---CCc--EEEcCEEEEeecCCCC
Confidence 34555666667889999999999999986543 2 223332 344 6999999999996543
No 247
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=70.79 E-value=12 Score=42.25 Aligned_cols=58 Identities=9% Similarity=-0.040 Sum_probs=46.3
Q ss_pred CCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHHcC
Q 012358 371 GKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHK 431 (465)
Q Consensus 371 ~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~lg 431 (465)
.+.+|+|.++++.|+...|+.+.-.|..++ +.+...+.-+.|. -|.|.++.+|+-.++
T Consensus 471 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gc~--~c~~~~~~~~~~~~~ 528 (785)
T TIGR02374 471 TPALCECTDFSRDELFEEIQARGFTTFAEV-MNQLGWKTKNGCS--TCKPAVQYYLAMLYP 528 (785)
T ss_pred cCcccCCcCCCHHHHHHHHHHcCCCCHHHH-HHHhCCCCCCCCc--ccHHhHHHHHHhcCC
Confidence 467999999999999999999999999996 4555544322455 499999999998643
No 248
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=70.40 E-value=9 Score=40.10 Aligned_cols=52 Identities=19% Similarity=0.056 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
.++.+|++.... ++|+.+++|+.|...++ + +.|.+. +|+ ++.||.||.|+-+
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~--~-~~v~~~---~g~--~~~ad~VI~a~p~ 278 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGD--R-YEISFA---NHE--SIQADYVVLAAPH 278 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCC--E-EEEEEC---CCC--EEEeCEEEECCCH
Confidence 455666555432 68999999999998764 3 345443 344 5899999999843
No 249
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=70.35 E-value=9.6 Score=43.61 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECC------------CC-------------cEEEEEccEEE
Q 012358 73 NVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL------------SG-------------KEFDTYAKVVV 127 (465)
Q Consensus 73 ~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~------------tg-------------~~~~i~a~~VV 127 (465)
...=++.|.+.|+.+.+.+....|..+++| ++.++++.... ++ ++.+|.||.||
T Consensus 643 ~~eEv~~A~eEGV~f~~~~~P~~i~~d~~g-~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi 721 (1028)
T PRK06567 643 NHEELIYALALGVDFKENMQPLRINVDKYG-HVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVI 721 (1028)
T ss_pred CHHHHHHHHHcCcEEEecCCcEEEEecCCC-eEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEE
Confidence 345566889999999999999999876545 88888776322 12 45789999999
Q ss_pred EccCCCh
Q 012358 128 NAAGPFC 134 (465)
Q Consensus 128 nAaG~wa 134 (465)
.|+|--.
T Consensus 722 ~A~G~~~ 728 (1028)
T PRK06567 722 MAIGIEN 728 (1028)
T ss_pred EecccCC
Confidence 9999543
No 250
>PLN02268 probable polyamine oxidase
Probab=69.83 E-value=12 Score=38.90 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=33.0
Q ss_pred hCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 82 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 82 ~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..|+.|+.+++|++|...++ . +.|++. +|+ ++.||.||+|+-+..
T Consensus 208 ~~~~~i~~~~~V~~i~~~~~--~-v~v~~~---~g~--~~~ad~VIva~P~~~ 252 (435)
T PLN02268 208 AKGLDIRLNHRVTKIVRRYN--G-VKVTVE---DGT--TFVADAAIIAVPLGV 252 (435)
T ss_pred hccCceeCCCeeEEEEEcCC--c-EEEEEC---CCc--EEEcCEEEEecCHHH
Confidence 45778999999999998764 2 334443 354 689999999986554
No 251
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=69.81 E-value=3.9 Score=43.25 Aligned_cols=68 Identities=25% Similarity=0.281 Sum_probs=49.1
Q ss_pred EEecCeeEchhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 60 VVYYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 60 ~~~~dg~vdp~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+.-+-+|+|=..+-..+-+..... +..++ ...|.++..+++. +|+||.+.+ |. .+.|+.||++||-+-
T Consensus 90 Vra~RaQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~-~v~GV~t~~---G~--~~~a~aVVlTTGTFL 158 (621)
T COG0445 90 VRAPRAQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQ-RVVGVVTAD---GP--EFHAKAVVLTTGTFL 158 (621)
T ss_pred hcchhhhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCC-eEEEEEeCC---CC--eeecCEEEEeecccc
Confidence 445668888777766666555433 56666 4568898876532 589999874 65 799999999999875
No 252
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=69.34 E-value=9.5 Score=39.92 Aligned_cols=114 Identities=13% Similarity=0.059 Sum_probs=58.0
Q ss_pred HHHHHHHHhhCCCCCCCceeeCHHH------HHHhCCCccccccccCceEEEE---ec-CeeEchhHHHHH-HHHHHHhC
Q 012358 15 VGLKMYDLVAGRHLLHLSRYYSAQE------SAELFPTLAMKAKDRSLKGAVV---YY-DGQMNDSRLNVG-LALTAALA 83 (465)
Q Consensus 15 ~gl~lyd~l~~~~~~~~~~~l~~~e------l~~~~P~l~~~~~~~~l~ga~~---~~-dg~vdp~rl~~~-l~~~A~~~ 83 (465)
.||.+--.|. +.+++++.++++.+ -..++|.+..+ .+...-++- ++ +....+..-... +...+.+.
T Consensus 19 sGlaaa~~L~-~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~--~p~~~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~y 95 (443)
T COG2072 19 SGLAAAYALK-QAGVPDFVIFEKRDDVGGTWRYNRYPGLRLD--SPKWLLGFPFLPFRWDEAFAPFAEIKDYIKDYLEKY 95 (443)
T ss_pred HHHHHHHHHH-HcCCCcEEEEEccCCcCCcchhccCCceEEC--CchheeccCCCccCCcccCCCcccHHHHHHHHHHHc
Confidence 4566555564 33444477777664 22357777653 111111111 11 122222221222 23334455
Q ss_pred CC--EEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 84 GA--AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 84 Ga--~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
|. .|..++.|.....+.++ +.|.|++.+ |.+.++.|+.||+|+|.+..
T Consensus 96 ~~~~~i~~~~~v~~~~~~~~~-~~w~V~~~~---~~~~~~~a~~vV~ATG~~~~ 145 (443)
T COG2072 96 GLRFQIRFNTRVEVADWDEDT-KRWTVTTSD---GGTGELTADFVVVATGHLSE 145 (443)
T ss_pred CceeEEEcccceEEEEecCCC-CeEEEEEcC---CCeeeEecCEEEEeecCCCC
Confidence 54 33344555555555444 578888875 33333889999999999754
No 253
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=69.33 E-value=12 Score=33.67 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCEEEcceeEEEEEEcCCCCeE----EEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 75 GLALTAALAGAAVLNHAEVISLIKDEASNRI----IGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 75 ~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v----~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
.+.+.....+++++.+++|.++..... .+ ..+.... +++..++.+|.||+|+|..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~~--~~~~~~~~~~~~~--~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPESK--RVVCPAVTIQVVE--TGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEESTT--EEEETCEEEEEEE--TTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeecccccccccccc--ccccCcccceeec--cCCceEecCCeeeecCccc
Confidence 455555678999988899999987653 32 1222222 4556789999999999965
No 254
>PRK07236 hypothetical protein; Provisional
Probab=68.70 E-value=15 Score=37.45 Aligned_cols=49 Identities=22% Similarity=0.294 Sum_probs=36.2
Q ss_pred CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhh
Q 012358 84 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 141 (465)
Q Consensus 84 Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~ 141 (465)
+..++.+++|+++..+++ . +.|.+. +|+ ++.||.||.|-|.+|. +++.+
T Consensus 112 ~~~i~~~~~v~~i~~~~~--~-v~v~~~---~g~--~~~ad~vIgADG~~S~-vR~~l 160 (386)
T PRK07236 112 AERYHLGETLVGFEQDGD--R-VTARFA---DGR--RETADLLVGADGGRST-VRAQL 160 (386)
T ss_pred CcEEEcCCEEEEEEecCC--e-EEEEEC---CCC--EEEeCEEEECCCCCch-HHHHh
Confidence 467999999999987653 3 335544 354 6999999999999985 54544
No 255
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=68.63 E-value=1.2e+02 Score=31.84 Aligned_cols=60 Identities=20% Similarity=0.096 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
.|..++.+....+ |+.+++|+.|.++.++ +.+... +|. ++.+|.||+++=++ .+..+++.
T Consensus 216 ~l~~al~~~l~~~---i~~~~~V~~i~~~~~~---~~~~~~---~g~--~~~~D~VI~t~p~~--~l~~ll~~ 275 (444)
T COG1232 216 SLIEALAEKLEAK---IRTGTEVTKIDKKGAG---KTIVDV---GGE--KITADGVISTAPLP--ELARLLGD 275 (444)
T ss_pred HHHHHHHHHhhhc---eeecceeeEEEEcCCc---cEEEEc---CCc--eEEcceEEEcCCHH--HHHHHcCC
Confidence 4556666555444 8999999999987542 233332 354 69999999998654 44455543
No 256
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=68.49 E-value=16 Score=36.87 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhc
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 142 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g 142 (465)
..+...+.+...++|++++.+++|+.+. + + .|.+. +|+ ++.+|.||.|+|.....+....+
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~-~----~v~~~---~g~--~i~~D~vi~a~G~~p~~~l~~~g 251 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--D-G----ALILA---DGR--TLPADAILWATGARAPPWLAESG 251 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEc--C-C----eEEeC---CCC--EEecCEEEEccCCChhhHHHHcC
Confidence 3455566667788999999999999884 2 1 35553 354 69999999999987765544333
No 257
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=67.81 E-value=21 Score=37.86 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..+...+.+...++|++++.++.++.+...++ . ..|++.+ .++..++.+|.||.|+|.-.
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~--~-~~v~~~~--~~~~~~i~~D~vl~a~G~~p 279 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEA--K-VKVTFTD--STNGIEEEYDTVLLAIGRDA 279 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC--e-EEEEEec--CCcceEEEeCEEEEEecCCc
Confidence 34555666677788999999999999876542 2 2355443 11123699999999999643
No 258
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=67.74 E-value=16 Score=42.50 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=43.0
Q ss_pred HHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC--------------CCCcEEEEEccEEEEccCCChH
Q 012358 77 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN--------------LSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 77 ~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~--------------~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.+.+.+.|++|+.++.++.|..+++| ++.+|++... .+|+..+|.||.||.|.|.-.+
T Consensus 616 ~~~a~eeGI~~~~~~~p~~i~~~~~G-~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~ 687 (1006)
T PRK12775 616 IRHAKEEGIDFFFLHSPVEIYVDAEG-SVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKAN 687 (1006)
T ss_pred HHHHHhCCCEEEecCCcEEEEeCCCC-eEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCC
Confidence 35677899999999999998765445 7888876421 1244457999999999997654
No 259
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=66.88 E-value=11 Score=39.17 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 72 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 72 l~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
++..+++..... +|+.+++|+.|..+++ . +.|.+. +|+ ++.||.||.|+-+.
T Consensus 223 l~~~l~~~l~~~--~i~~~~~V~~i~~~~~--~-~~v~~~---~g~--~~~~d~vI~a~p~~ 274 (451)
T PRK11883 223 LIEALEEKLPAG--TIHKGTPVTKIDKSGD--G-YEIVLS---NGG--EIEADAVIVAVPHP 274 (451)
T ss_pred HHHHHHHhCcCC--eEEeCCEEEEEEEcCC--e-EEEEEC---CCC--EEEcCEEEECCCHH
Confidence 455555444222 8999999999988753 3 344443 354 68999999998764
No 260
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=66.58 E-value=19 Score=37.93 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.+...+.+...++|++++++++|+.+..+++ .+ .|.+. +|+ ++.+|.||.|+|.-..
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~--~~-~v~~~---~g~--~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERTGD--GV-VVTLT---DGR--TVEGSHALMAVGSVPN 275 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEeCC--EE-EEEEC---CCc--EEEecEEEEeecCCcC
Confidence 3445555666789999999999999976543 32 24432 354 6999999999997543
No 261
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=66.54 E-value=19 Score=36.27 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=40.5
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---------------CCCcEEEEEccEEEEccCCChHH
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---------------LSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---------------~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
+.+...++|++++.++.|++++.+ + ++..|++.+. .+|+..+|.+|.||.|+|.-.+.
T Consensus 216 ~~~~l~~~gi~i~~~~~v~~i~~~--~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 288 (352)
T PRK12770 216 EIERLIARGVEFLELVTPVRIIGE--G-RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP 288 (352)
T ss_pred HHHHHHHcCCEEeeccCceeeecC--C-cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc
Confidence 344566789999999999998753 2 4555654321 13455579999999999986543
No 262
>PTZ00367 squalene epoxidase; Provisional
Probab=66.27 E-value=1.4e+02 Score=32.47 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=45.3
Q ss_pred HHHHHHHHHH---HhCCCEEEcceeEEEEEEcCCC--CeEEEEEEEECCCC--------------------cEEEEEccE
Q 012358 71 RLNVGLALTA---ALAGAAVLNHAEVISLIKDEAS--NRIIGARIRNNLSG--------------------KEFDTYAKV 125 (465)
Q Consensus 71 rl~~~l~~~A---~~~Ga~i~~~t~V~~i~~~~~g--~~v~gV~~~d~~tg--------------------~~~~i~a~~ 125 (465)
++...|.+.+ ...|+++++ +.|+++..++.+ .++.+|++.....+ +..++.||.
T Consensus 132 ~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdL 210 (567)
T PTZ00367 132 DFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPL 210 (567)
T ss_pred HHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCE
Confidence 4666666655 346888875 578888654320 13677877542110 123799999
Q ss_pred EEEccCCChHHHhhhhcC
Q 012358 126 VVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 126 VVnAaG~wa~~l~~~~g~ 143 (465)
||.|=|.+| .+++.++.
T Consensus 211 vVgADG~~S-~vR~~l~~ 227 (567)
T PTZ00367 211 VVMCDGGMS-KFKSRYQH 227 (567)
T ss_pred EEECCCcch-HHHHHccC
Confidence 999999985 45666654
No 263
>PRK13748 putative mercuric reductase; Provisional
Probab=66.02 E-value=24 Score=37.97 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+...+.|++++.++.|+.+..++ + . ..+.+. ++ ++.+|.||+|+|....
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-~-~-~~v~~~---~~---~i~~D~vi~a~G~~pn 366 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHVD-G-E-FVLTTG---HG---ELRADKLLVATGRAPN 366 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-C-E-EEEEec---CC---eEEeCEEEEccCCCcC
Confidence 4456667777788999999999999997654 2 2 223322 23 5999999999998654
No 264
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=65.75 E-value=18 Score=39.07 Aligned_cols=58 Identities=24% Similarity=0.152 Sum_probs=40.0
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC------C-------CCcEEEEEccEEEEccCCChH
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN------L-------SGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~------~-------tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.++.+.+.|++++.++.++.|..+++ ++.++++... . +|+..+|.+|.||.|.|.-.+
T Consensus 311 ~~~~a~~~GVki~~~~~~~~i~~~~~--~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~ 381 (564)
T PRK12771 311 EIEEALREGVEINWLRTPVEIEGDEN--GATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDID 381 (564)
T ss_pred HHHHHHHcCCEEEecCCcEEEEcCCC--CEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCc
Confidence 34556778999999999999976543 3336543110 0 355568999999999996543
No 265
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=65.52 E-value=16 Score=38.23 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=62.5
Q ss_pred HHHHHHhCCCccccccccCceEEEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCC
Q 012358 37 AQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSG 116 (465)
Q Consensus 37 ~~el~~~~P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg 116 (465)
...+++++|... --++|-|-..-...+-.-+.+.-.+.|+.+.. -+|..|....++ + ..|+..|++.|
T Consensus 391 A~~Ike~~Pd~~---------v~I~YmDiRafG~~yEefY~~~Q~~~gV~fIR-Grvaei~e~p~~-~-l~V~~EdTl~g 458 (622)
T COG1148 391 AQLIKERYPDTD---------VTIYYMDIRAFGKDYEEFYVRSQEDYGVRFIR-GRVAEIAEFPKK-K-LIVRVEDTLTG 458 (622)
T ss_pred hhhhhhcCCCcc---------eeEEEEEeeccCccHHHHHHhhhhhhchhhhc-CChHHheeCCCC-e-eEEEEEeccCc
Confidence 345666777542 12344454333323333344444488999875 467777776653 4 45888898889
Q ss_pred cEEEEEccEEEEccCCC----hHHHhhhhcCC
Q 012358 117 KEFDTYAKVVVNAAGPF----CDSVRKLADQN 144 (465)
Q Consensus 117 ~~~~i~a~~VVnAaG~w----a~~l~~~~g~~ 144 (465)
+..++.+|.||+++|.- +..+++++|..
T Consensus 459 ~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~ 490 (622)
T COG1148 459 EVKEIEADLVVLATGMEPSEGAKKIAKILGLS 490 (622)
T ss_pred cceecccceEEEeeccccCcchHHHHHhcCcc
Confidence 88899999999999964 45777777764
No 266
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=65.08 E-value=24 Score=40.77 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=42.1
Q ss_pred HHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEE--------------CCCCcEEEEEccEEEEccCCChHHH
Q 012358 77 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRN--------------NLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 77 ~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d--------------~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
++.|.+.|++++.++.++.|..+++++++.++.+.. ..+|++.+|.||.||.|.|.-.+..
T Consensus 491 ~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~ 565 (944)
T PRK12779 491 LHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI 565 (944)
T ss_pred HHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChh
Confidence 345678899999999999997653221566665421 0135556899999999999876543
No 267
>PTZ00058 glutathione reductase; Provisional
Probab=63.93 E-value=29 Score=37.51 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
..+...+.+...++|++++.++.|.++..++++ .+. +...+ +. .++.+|.||+|+|.-
T Consensus 278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~-~v~-v~~~~---~~-~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 278 ETIINELENDMKKNNINIITHANVEEIEKVKEK-NLT-IYLSD---GR-KYEHFDYVIYCVGRS 335 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCC-cEE-EEECC---CC-EEEECCEEEECcCCC
Confidence 345566667778899999999999999765322 222 22222 22 369999999999964
No 268
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=63.81 E-value=19 Score=36.53 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=39.9
Q ss_pred eEchhHHHHH-HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 66 QMNDSRLNVG-LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 66 ~vdp~rl~~~-l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
...+..+... ....+.++|++++.+++|+++..++ + .|.+ ++. .+.+|+||+|+|...
T Consensus 53 ~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~---~--~v~~----~~~--~~~yd~LVlATG~~~ 111 (377)
T PRK04965 53 GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEA---Q--VVKS----QGN--QWQYDKLVLATGASA 111 (377)
T ss_pred CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCC---C--EEEE----CCe--EEeCCEEEECCCCCC
Confidence 3455555542 3344567899999999999997754 2 2333 243 699999999999853
No 269
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=63.63 E-value=19 Score=38.56 Aligned_cols=62 Identities=24% Similarity=0.153 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCC--EEEcceeEEEEEEcCCC--CeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALAGA--AVLNHAEVISLIKDEAS--NRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga--~i~~~t~V~~i~~~~~g--~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.+..-|-..|...|. .|.++|+|+++.+.++. ..-|.|++. .+|+..+-..|.||+|+|.++
T Consensus 85 ~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~--~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 85 EVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE--NDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp HHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET--TTTEEEEEEECEEEEEE-SSS
T ss_pred HHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee--cCCeEEEEEeCeEEEcCCCcC
Confidence 444444455666675 68899999999875431 013667653 246555567899999999976
No 270
>PRK13984 putative oxidoreductase; Provisional
Probab=63.03 E-value=22 Score=38.80 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=39.5
Q ss_pred HHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC--------------CCCcEEEEEccEEEEccCCCh
Q 012358 78 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN--------------LSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 78 ~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~--------------~tg~~~~i~a~~VVnAaG~wa 134 (465)
..+.+.|++++.++.++.+..++ | ++.+|++.+. .+|+..+|.+|.||.|.|.-.
T Consensus 470 ~~~~~~GV~i~~~~~~~~i~~~~-g-~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p 538 (604)
T PRK13984 470 EEGLEEGVVIYPGWGPMEVVIEN-D-KVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAP 538 (604)
T ss_pred HHHHHcCCEEEeCCCCEEEEccC-C-EEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCC
Confidence 44567899999998888886544 4 7777766421 123445799999999999764
No 271
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=62.94 E-value=61 Score=33.19 Aligned_cols=72 Identities=26% Similarity=0.389 Sum_probs=53.8
Q ss_pred EchhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhc
Q 012358 67 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 142 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g 142 (465)
+...|+++.|.+.|... .+++-+. .|.++.+++ | .|.||+..+.. |++.+..|..-|+|-|.++.-=..+..
T Consensus 144 FhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~-g-vvkGV~yk~k~-gee~~~~ApLTvVCDGcfSnlRrsL~~ 216 (509)
T KOG1298|consen 144 FHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEE-G-VVKGVTYKNKE-GEEVEAFAPLTVVCDGCFSNLRRSLCD 216 (509)
T ss_pred eeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhcc-C-eEEeEEEecCC-CceEEEecceEEEecchhHHHHHHhcC
Confidence 45678999999888654 6776554 588888776 4 78999998753 555788999999999999764433333
No 272
>PTZ00052 thioredoxin reductase; Provisional
Probab=62.07 E-value=26 Score=37.22 Aligned_cols=56 Identities=16% Similarity=0.123 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.+...+.+...++|++++.++.|+.+...++ . ..+.+. +|+ ++.+|.||.|+|.-.
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~--~-~~v~~~---~g~--~i~~D~vl~a~G~~p 278 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMDD--K-IKVLFS---DGT--TELFDTVLYATGRKP 278 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEcCC--e-EEEEEC---CCC--EEEcCEEEEeeCCCC
Confidence 3555666677789999999999999876542 2 234443 354 589999999999754
No 273
>PTZ00217 flap endonuclease-1; Provisional
Probab=60.93 E-value=1e+02 Score=31.66 Aligned_cols=93 Identities=12% Similarity=0.121 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHhCccHHHHHHHHhccCCCCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhH
Q 012358 341 VMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALP 420 (465)
Q Consensus 341 ~~~~~~~~~l~~~yG~~a~~v~~~~~~~~~~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~ 420 (465)
++-+..+-.|+..||+ ...|++.+.... ..+....+ -.+++.+..++-+....++ .+-|. .--.+
T Consensus 242 GIG~ktA~~Li~~~gs-le~il~~~~~~k--~~~p~~~~--~~~~~~~f~~p~V~~~~~~-----~l~w~-----~pD~~ 306 (393)
T PTZ00217 242 GIGPKTAYKLIKKYKS-IEEILEHLDKTK--YPVPENFD--YKEARELFLNPEVTPAEEI-----DLKWN-----EPDEE 306 (393)
T ss_pred CccHHHHHHHHHHcCC-HHHHHHHHHhcC--CCCCCCCC--hHHHHHHhcCCCcCCCCCC-----CCCCC-----CCCHH
Confidence 3788899999999998 456666443221 12333333 4577777777766655443 12231 23466
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 012358 421 RIIEIMATEHKWDKSRRKQELQKAKEFL 448 (465)
Q Consensus 421 ~v~~~~a~~lgw~~~~~~~e~~~~~~~~ 448 (465)
.+.+.|.++.||+++++...++.+.+..
T Consensus 307 ~l~~fl~~e~~f~~~rv~~~i~rl~~~~ 334 (393)
T PTZ00217 307 GLKKFLVKEKNFNEERVEKYIERLKKAK 334 (393)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHh
Confidence 7889999999999999999998876554
No 274
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=60.57 E-value=10 Score=38.92 Aligned_cols=69 Identities=17% Similarity=0.109 Sum_probs=50.5
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh-HHHhhhhcC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC-DSVRKLADQ 143 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa-~~l~~~~g~ 143 (465)
|=|.-+...-++..++.|+.++-+..|.++.+... . .-+.+.| |. ++++|.||+|.|.-- .+|++.-|.
T Consensus 390 iLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~--n-l~lkL~d---G~--~l~tD~vVvavG~ePN~ela~~sgL 459 (659)
T KOG1346|consen 390 ILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK--N-LVLKLSD---GS--ELRTDLVVVAVGEEPNSELAEASGL 459 (659)
T ss_pred hhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc--c-eEEEecC---CC--eeeeeeEEEEecCCCchhhcccccc
Confidence 45777888888888889999999999999877643 2 2356654 65 799999999999753 344443343
No 275
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=60.53 E-value=21 Score=37.21 Aligned_cols=52 Identities=15% Similarity=0.069 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 72 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 72 l~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
++..+++... .++|+.+++|+.|...++ + +.|++. +|+ ++.||.||+|+-+.
T Consensus 227 l~~~l~~~l~--~~~i~~~~~V~~I~~~~~--~-~~v~~~---~g~--~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 227 LPEEIEKRLK--LTKVYKGTKVTKLSHRGS--N-YTLELD---NGV--TVETDSVVVTAPHK 278 (462)
T ss_pred HHHHHHHHhc--cCeEEcCCeEEEEEecCC--c-EEEEEC---CCc--EEEcCEEEECCCHH
Confidence 4444443332 278999999999988654 2 345443 343 68999999998764
No 276
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=59.96 E-value=20 Score=36.77 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=34.0
Q ss_pred HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 81 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 81 ~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.++|++++.++.|+.+..++. .|.+. +|+ ++.+|++|+|+|...
T Consensus 69 ~~~~i~~~~g~~V~~id~~~~-----~v~~~---~g~--~~~yd~LViATGs~~ 112 (396)
T PRK09754 69 QENNVHLHSGVTIKTLGRDTR-----ELVLT---NGE--SWHWDQLFIATGAAA 112 (396)
T ss_pred HHCCCEEEcCCEEEEEECCCC-----EEEEC---CCC--EEEcCEEEEccCCCC
Confidence 468999999999999977542 34443 354 699999999999875
No 277
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=57.23 E-value=20 Score=36.82 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=58.2
Q ss_pred chhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECC---CC-------cEEEEEccEEEEccCCC---h
Q 012358 68 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL---SG-------KEFDTYAKVVVNAAGPF---C 134 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~---tg-------~~~~i~a~~VVnAaG~w---a 134 (465)
.=..++..|.+.|.+.|++|+-...+..+..+.+| .|.||.+.|.- +| ...++.|++-|.|-|+. +
T Consensus 181 ~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edg-sVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Ls 259 (621)
T KOG2415|consen 181 SLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDG-SVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLS 259 (621)
T ss_pred EHHHHHHHHHHHHHhhCceeccccchhheeEcCCC-cEeeEeeccccccCCCCccccccccceecceeEEEeccccchhH
Confidence 44578999999999999999999999999988777 89999886531 11 11368999999999886 4
Q ss_pred HHHhhhhcC
Q 012358 135 DSVRKLADQ 143 (465)
Q Consensus 135 ~~l~~~~g~ 143 (465)
.++.+.++.
T Consensus 260 kqi~kkf~L 268 (621)
T KOG2415|consen 260 KQIIKKFDL 268 (621)
T ss_pred HHHHHHhCc
Confidence 566665544
No 278
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=57.13 E-value=48 Score=36.65 Aligned_cols=62 Identities=10% Similarity=-0.015 Sum_probs=37.7
Q ss_pred HHHHHHHHH-HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCc----------EEEEEccEEEEccCCCh
Q 012358 72 LNVGLALTA-ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGK----------EFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 72 l~~~l~~~A-~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~----------~~~i~a~~VVnAaG~wa 134 (465)
+...+.+.. .++|++++.++.|..+...+++ ..+.+.+.+..+++ ..++.+|.||.|+|.-.
T Consensus 355 is~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~-~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~P 427 (659)
T PTZ00153 355 VAKYFERVFLKSKPVRVHLNTLIEYVRAGKGN-QPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKP 427 (659)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-eEEEEEEeccccccccccccccccceEEEcCEEEEEECccc
Confidence 333344433 4689999999999999765432 21223332211111 12699999999999753
No 279
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=57.07 E-value=44 Score=35.19 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.+...+.+...+. +.++.++.|+.+...++ . ..+.+.+. +|+..++.+|.||+|+|.-.
T Consensus 216 ~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~--~-~~v~~~~~-~~~~~~i~~D~vi~a~G~~p 274 (471)
T PRK06467 216 DIVKVFTKRIKKQ-FNIMLETKVTAVEAKED--G-IYVTMEGK-KAPAEPQRYDAVLVAVGRVP 274 (471)
T ss_pred HHHHHHHHHHhhc-eEEEcCCEEEEEEEcCC--E-EEEEEEeC-CCcceEEEeCEEEEeecccc
Confidence 4555566666667 99999999999976543 3 23444331 23234699999999999754
No 280
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=54.10 E-value=30 Score=35.87 Aligned_cols=64 Identities=17% Similarity=0.068 Sum_probs=41.3
Q ss_pred eeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEE--C---CCCcEEEEEccEEEEccCCCh
Q 012358 65 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRN--N---LSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 65 g~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d--~---~tg~~~~i~a~~VVnAaG~wa 134 (465)
|..++..+...+...+...|++++. .+|++|+.+++ . |.+.. . .+++..++.+|++|+|+|.-.
T Consensus 57 g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~Id~~~~--~---v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 57 GTLEFRSICEPVRPALAKLPNRYLR-AVVYDVDFEEK--R---VKCGVVSKSNNANVNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred cCCChHHhHHHHHHHhccCCeEEEE-EEEEEEEcCCC--E---EEEecccccccccCCceEecCCEEEECCCccc
Confidence 4455666666666666677888764 68999987653 2 33310 0 001123699999999999864
No 281
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=53.42 E-value=43 Score=36.95 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=37.5
Q ss_pred HHHHHhCCCEEEcceeEEEEEEcCCCCeE--EEEEEEEC------------CCCcEEEEEccEEEEccCCCh
Q 012358 77 ALTAALAGAAVLNHAEVISLIKDEASNRI--IGARIRNN------------LSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 77 ~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v--~gV~~~d~------------~tg~~~~i~a~~VVnAaG~wa 134 (465)
+..+.+.|++|+.++.++.|..+++ ++ ..+.+.+. .+|++.+|.+|.||.|+|.-.
T Consensus 368 i~~a~~eGV~i~~~~~~~~i~~~~~--~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p 437 (652)
T PRK12814 368 IEEALAEGVSLRELAAPVSIERSEG--GLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQV 437 (652)
T ss_pred HHHHHHcCCcEEeccCcEEEEecCC--eEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcC
Confidence 4455678999999999988876543 32 22322210 134556799999999999753
No 282
>PRK10262 thioredoxin reductase; Provisional
Probab=52.88 E-value=69 Score=31.53 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=38.5
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
++...+...+.+.+...+.++..+ +|+++...++ .+.+... .+ .+.+|.||+|+|.+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~---~~~v~~~---~~---~~~~d~vilAtG~~~ 117 (321)
T PRK10262 60 LTGPLLMERMHEHATKFETEIIFD-HINKVDLQNR---PFRLTGD---SG---EYTCDALIIATGASA 117 (321)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCC---eEEEEec---CC---EEEECEEEECCCCCC
Confidence 444556666667777788887654 6778876542 2333321 12 589999999999984
No 283
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=52.19 E-value=35 Score=35.53 Aligned_cols=62 Identities=10% Similarity=0.083 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcC
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQ 143 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~ 143 (465)
..+...+.+...+.|++++.+++|+++.. . .|.+. +|+ ++.+|.||.|+|.-.+ .+.+..|.
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~-----~v~~~---~g~--~~~~D~vl~a~G~~pn~~~l~~~gl 251 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAING--N-----EVTFK---SGK--VEHYDMIIEGVGTHPNSKFIESSNI 251 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C-----EEEEC---CCC--EEEeCEEEECcCCCcChHHHHhcCc
Confidence 34556677777889999999999999842 1 24443 254 6899999999997542 33444443
No 284
>PLN02576 protoporphyrinogen oxidase
Probab=51.99 E-value=46 Score=35.04 Aligned_cols=55 Identities=29% Similarity=0.212 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 71 RLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 71 rl~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
.+..+|++. .| ..|..+++|+.|+..++ +.|.|.+.+ .+|+ .++.||.||.|+-+
T Consensus 240 ~L~~~la~~---l~~~~i~l~~~V~~I~~~~~--~~~~v~~~~-~~g~-~~~~ad~VI~a~P~ 295 (496)
T PLN02576 240 TLPDALAKR---LGKDKVKLNWKVLSLSKNDD--GGYSLTYDT-PEGK-VNVTAKAVVMTAPL 295 (496)
T ss_pred HHHHHHHHh---hCcCcEEcCCEEEEEEECCC--CcEEEEEec-CCCc-eeEEeCEEEECCCH
Confidence 355555433 35 68999999999998764 324455542 1232 26999999999844
No 285
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=50.94 E-value=58 Score=37.89 Aligned_cols=67 Identities=16% Similarity=0.063 Sum_probs=46.7
Q ss_pred HHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh-HHHhhhhcC
Q 012358 73 NVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC-DSVRKLADQ 143 (465)
Q Consensus 73 ~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa-~~l~~~~g~ 143 (465)
...+.+...++|+.++.++.|+.+..+ + ++.+|++... +|+..+|.||.|+++.|.-. .++...+|.
T Consensus 354 ~~~l~~~L~~~GV~i~~~~~v~~i~g~--~-~v~~V~l~~~-~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~ 421 (985)
T TIGR01372 354 SPEARAEARELGIEVLTGHVVAATEGG--K-RVSGVAVARN-GGAGQRLEADALAVSGGWTPVVHLFSQRGG 421 (985)
T ss_pred hHHHHHHHHHcCCEEEcCCeEEEEecC--C-cEEEEEEEec-CCceEEEECCEEEEcCCcCchhHHHHhcCC
Confidence 344566667889999999999998653 2 5667777531 24445799999999999764 345555543
No 286
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=50.01 E-value=71 Score=33.33 Aligned_cols=58 Identities=17% Similarity=0.017 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
..+...+.+...++ ++++.+++|+++..+++ ..+.+.. .+++..++.+|.||.|+|.-
T Consensus 210 ~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~----~~v~~~~-~~~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 210 PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGD----EKVEELE-KGGKTETIEADYVLVATGRR 267 (460)
T ss_pred HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC----ceEEEEE-cCCceEEEEeCEEEEccCCc
Confidence 34555566666677 99999999999976532 1233321 12444579999999999974
No 287
>PRK07846 mycothione reductase; Reviewed
Probab=49.50 E-value=45 Score=34.93 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=34.8
Q ss_pred HHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 79 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 79 ~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
...+.|++++.+++|+++..+++ .+ .|.+. +|+ ++.+|.||.|+|.-.+
T Consensus 215 ~l~~~~v~i~~~~~v~~i~~~~~--~v-~v~~~---~g~--~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 215 ELASKRWDVRLGRNVVGVSQDGS--GV-TLRLD---DGS--TVEADVLLVATGRVPN 263 (451)
T ss_pred HHHhcCeEEEeCCEEEEEEEcCC--EE-EEEEC---CCc--EeecCEEEEEECCccC
Confidence 34467899999999999976542 22 24432 344 6999999999998643
No 288
>PLN02568 polyamine oxidase
Probab=48.80 E-value=43 Score=36.03 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
.|+..|++.. .+..|+.+++|+.|...++ . +.|.+. +|+ ++.||.||+|.-++
T Consensus 243 ~Li~~La~~L--~~~~I~ln~~V~~I~~~~~--~-v~V~~~---dG~--~~~aD~VIvTvPl~ 295 (539)
T PLN02568 243 SVIEALASVL--PPGTIQLGRKVTRIEWQDE--P-VKLHFA---DGS--TMTADHVIVTVSLG 295 (539)
T ss_pred HHHHHHHhhC--CCCEEEeCCeEEEEEEeCC--e-EEEEEc---CCC--EEEcCEEEEcCCHH
Confidence 3556665543 2457899999999988754 2 334443 354 58999999998754
No 289
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=48.19 E-value=56 Score=34.18 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=34.4
Q ss_pred HHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 79 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 79 ~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
...+.|++++.+++|+.+..+++ . ..|.+. +|+ ++.+|.||.|+|.-.
T Consensus 218 ~~~~~gI~i~~~~~V~~i~~~~~--~-v~v~~~---~g~--~i~~D~vl~a~G~~p 265 (452)
T TIGR03452 218 EIAKKKWDIRLGRNVTAVEQDGD--G-VTLTLD---DGS--TVTADVLLVATGRVP 265 (452)
T ss_pred HHHhcCCEEEeCCEEEEEEEcCC--e-EEEEEc---CCC--EEEcCEEEEeeccCc
Confidence 34457899999999999986543 3 234432 354 699999999999654
No 290
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=46.46 E-value=32 Score=35.46 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=65.6
Q ss_pred HHHHHHHHhhCCCCCCCceeeCHHHHHHhCCCccccccccCceEEEEecCeeEchhHHHHHHHHHHHhCC-CEEEcceeE
Q 012358 15 VGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAG-AAVLNHAEV 93 (465)
Q Consensus 15 ~gl~lyd~l~~~~~~~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~~~G-a~i~~~t~V 93 (465)
.||.+.-.|.....-.++.++|+....-.-|.| +....|.+++...+.-+..-+...+ +++. ..+|
T Consensus 14 gGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL------------~eva~g~l~~~~i~~p~~~~~~~~~~v~~~-~~~V 80 (405)
T COG1252 14 GGLSAAKRLARKLPDVEITLVDRRDYHLFTPLL------------YEVATGTLSESEIAIPLRALLRKSGNVQFV-QGEV 80 (405)
T ss_pred HHHHHHHHhhhcCCCCcEEEEeCCCccccchhh------------hhhhcCCCChhheeccHHHHhcccCceEEE-EEEE
Confidence 577777777643212456777766553333332 1123466777877777887777666 8876 4689
Q ss_pred EEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 94 ISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 94 ~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
++|+.+++ .|.+.+ + .+|.-|.+|+|.|.-...+
T Consensus 81 ~~ID~~~k-----~V~~~~---~--~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 81 TDIDRDAK-----KVTLAD---L--GEISYDYLVVALGSETNYF 114 (405)
T ss_pred EEEcccCC-----EEEeCC---C--ccccccEEEEecCCcCCcC
Confidence 99998763 366653 2 2699999999999876544
No 291
>PLN02546 glutathione reductase
Probab=45.56 E-value=97 Score=33.51 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+...++|++++.++.|+.+...+++ . ..+.+. +++ .+.+|.||.|+|.-.+
T Consensus 293 ~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g-~-v~v~~~---~g~--~~~~D~Viva~G~~Pn 351 (558)
T PLN02546 293 EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADG-S-LSLKTN---KGT--VEGFSHVMFATGRKPN 351 (558)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCC-E-EEEEEC---CeE--EEecCEEEEeeccccC
Confidence 344455666677899999999999999764433 2 223321 221 3458999999997654
No 292
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=44.68 E-value=31 Score=39.31 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=46.0
Q ss_pred CCCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHHcC
Q 012358 370 LGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHK 431 (465)
Q Consensus 370 ~~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~lg 431 (465)
..+.+|.|.+++++|+...|+.+.-.|.++++. +..-+ ..|. -|.|.|+.+++-.++
T Consensus 481 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~gc~--~c~p~~~~~l~~~~~ 537 (847)
T PRK14989 481 VNNNLCEHFAYSRQELFHLIRVEGIKTFEELLA-KHGKG--YGCE--VCKPTVGSLLASCWN 537 (847)
T ss_pred ccccccCCcCCCHHHHHHHHHHcCCCCHHHHHH-HhCCC--CCCc--hhhHHHHHHHHhcCc
Confidence 456899999999999999999999999999754 33333 3455 499999999998744
No 293
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=43.70 E-value=43 Score=24.58 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=28.4
Q ss_pred HHHhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 012358 413 DAAGRALPRIIEIMATEHKWDKSRRKQELQKAKEFLETFK 452 (465)
Q Consensus 413 ~~~~~~~~~v~~~~a~~lgw~~~~~~~e~~~~~~~~~~~~ 452 (465)
|.+......|++.+++.++.++++.++.+..+...|....
T Consensus 26 ~~g~~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~~g 65 (68)
T PF05402_consen 26 LDGPRTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLREKG 65 (68)
T ss_dssp --SSS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCc
Confidence 3445677888899999999999999988888877776543
No 294
>PLN02529 lysine-specific histone demethylase 1
Probab=39.80 E-value=78 Score=35.45 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=29.8
Q ss_pred CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 84 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 84 Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+..|+.+++|+.|...++ +|++.+ .++ ++.||.||+|.=+.
T Consensus 366 ~L~IrLnt~V~~I~~~~d-----GVtV~t--~~~--~~~AD~VIVTVPlg 406 (738)
T PLN02529 366 GVPIFYGKTVDTIKYGND-----GVEVIA--GSQ--VFQADMVLCTVPLG 406 (738)
T ss_pred cCCEEcCCceeEEEEcCC-----eEEEEE--CCE--EEEcCEEEECCCHH
Confidence 567999999999998764 244443 232 68999999988543
No 295
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=39.58 E-value=71 Score=32.57 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEE-EEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISL-IKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i-~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
..+++..|++. .||++ .+++|++| ...+++...+.|...+. ++. ..-.-|.||+|| ||
T Consensus 127 N~qI~~~ll~~---S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~-~~~-~~~~yD~VVIAt-Pl 185 (368)
T PF07156_consen 127 NWQIFEGLLEA---SGANV-LNTTVTSITRRSSDGYSLYEVTYKSS-SGT-ESDEYDIVVIAT-PL 185 (368)
T ss_pred HHHHHHHHHHH---ccCcE-ecceeEEEEeccCCCceeEEEEEecC-CCC-ccccCCEEEECC-Cc
Confidence 45788888874 68999 67999999 44443312455655432 221 123459999999 55
No 296
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=37.50 E-value=1.3e+02 Score=32.52 Aligned_cols=51 Identities=18% Similarity=0.075 Sum_probs=34.2
Q ss_pred hCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEE--EccE----EEEccCCChH
Q 012358 82 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDT--YAKV----VVNAAGPFCD 135 (465)
Q Consensus 82 ~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i--~a~~----VVnAaG~wa~ 135 (465)
..|++++.++.|+.+..+ + .+..+.+.+..+|+..++ .||. ||.|+|.-.+
T Consensus 191 ~~gV~i~~~~~V~~i~~~--~-~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn 247 (555)
T TIGR03143 191 HPKIEVKFNTELKEATGD--D-GLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPS 247 (555)
T ss_pred CCCcEEEeCCEEEEEEcC--C-cEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCC
Confidence 359999999999999743 2 455555543334654444 3676 9999998643
No 297
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=36.49 E-value=1.2e+02 Score=31.70 Aligned_cols=52 Identities=19% Similarity=0.098 Sum_probs=31.4
Q ss_pred HHHHHHhCCCEEEcceeEEEEE--EcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 76 LALTAALAGAAVLNHAEVISLI--KDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~--~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+.+...+.|++++..+ ++.+. .+.+ . +.|... +|+..++.+|.||+|+|.-.
T Consensus 98 ~~~~l~~~gV~~~~g~-~~~~~~~~~~~--~-v~V~~~---~g~~~~~~~d~lViATGs~p 151 (466)
T PRK07845 98 IRARLEREGVRVIAGR-GRLIDPGLGPH--R-VKVTTA---DGGEETLDADVVLIATGASP 151 (466)
T ss_pred HHHHHHHCCCEEEEEE-EEEeecccCCC--E-EEEEeC---CCceEEEecCEEEEcCCCCC
Confidence 3445567899998754 44433 2222 2 223332 35434699999999999853
No 298
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=34.49 E-value=2.3e+02 Score=30.03 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCC--CeEEEEEEEECCCCcEEEEE---ccEEEEccCCChHH
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEAS--NRIIGARIRNNLSGKEFDTY---AKVVVNAAGPFCDS 136 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g--~~v~gV~~~d~~tg~~~~i~---a~~VVnAaG~wa~~ 136 (465)
.++.-|.+...++||.+..+|+|++|..+.++ ..+..+.+.. .|.+.+|. -|.|++..|.-++.
T Consensus 208 Sii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~--~g~~~~i~l~~~DlV~vT~GS~t~~ 276 (500)
T PF06100_consen 208 SIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQ--DGKEETIDLGPDDLVFVTNGSMTEG 276 (500)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEc--CCCeeEEEeCCCCEEEEECCccccc
Confidence 46777888889999999999999999875321 1244555543 45554554 47888888876544
No 299
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=33.46 E-value=54 Score=34.47 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=45.7
Q ss_pred EEEecCeeEchhHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCC--CC-eEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 59 AVVYYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEA--SN-RIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 59 a~~~~dg~vdp~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~--g~-~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
|++-+-+|+|=..+-..+-+..-. ...+|+. ..|.++...+. |. .+.||.+.| |. .|.|+.||+.+|-+-
T Consensus 113 AVwg~RAQiDR~lYkk~MQkei~st~nL~ire-~~V~dliv~~~~~~~~~~~gV~l~d---gt--~v~a~~VilTTGTFL 186 (679)
T KOG2311|consen 113 AVWGLRAQIDRKLYKKNMQKEISSTPNLEIRE-GAVADLIVEDPDDGHCVVSGVVLVD---GT--VVYAESVILTTGTFL 186 (679)
T ss_pred cccChHHhhhHHHHHHHHHHHhccCCcchhhh-hhhhheeeccCCCCceEEEEEEEec---Cc--EeccceEEEeeccce
Confidence 344566778766666666555422 2455554 45777766432 11 277898875 65 699999999999873
No 300
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=31.73 E-value=29 Score=34.81 Aligned_cols=64 Identities=17% Similarity=0.021 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEE--cCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIK--DEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~--~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
........+...+.|++++.++.|..+.. ...+ ..+..... +.+...+.+|.||+|+|.|....
T Consensus 68 ~~~~~~~~~~l~~~~i~~~~~~~v~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~d~lviAtGs~~~~~ 133 (352)
T PRK12770 68 IERVREGVKELEEAGVVFHTRTKVCCGEPLHEEEG-DEFVERIV---SLEELVKKYDAVLIATGTWKSRK 133 (352)
T ss_pred HHHHHHHHHHHHhCCeEEecCcEEeeccccccccc-cccccccC---CHHHHHhhCCEEEEEeCCCCCCc
Confidence 33344555667778999998888866532 1111 11111111 11112478999999999975433
No 301
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=31.54 E-value=95 Score=35.17 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.++.+|++. ..|+.+++|+.|...++ . |.+.. +|+ ++.||.||+|.=+..
T Consensus 438 ~Li~aLa~~-----L~I~ln~~V~~I~~~~d--g---V~V~~--~G~--~~~AD~VIvTvPl~v 487 (808)
T PLN02328 438 TFVRELAKD-----LPIFYERTVESIRYGVD--G---VIVYA--GGQ--EFHGDMVLCTVPLGV 487 (808)
T ss_pred HHHHHHHhh-----CCcccCCeeEEEEEcCC--e---EEEEe--CCe--EEEcCEEEECCCHHH
Confidence 455555543 23888999999998764 2 33332 354 689999999986543
No 302
>PLN02507 glutathione reductase
Probab=30.70 E-value=1.3e+02 Score=31.94 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=28.4
Q ss_pred HHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 80 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 80 A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
....|++++.. ++..+. .+ . +.|.+. +|+..++.+|.||+|+|..
T Consensus 134 l~~~gV~~i~g-~a~~vd--~~--~-v~V~~~---~g~~~~~~~d~LIIATGs~ 178 (499)
T PLN02507 134 LANAGVKLYEG-EGKIVG--PN--E-VEVTQL---DGTKLRYTAKHILIATGSR 178 (499)
T ss_pred HHhCCcEEEEE-EEEEec--CC--E-EEEEeC---CCcEEEEEcCEEEEecCCC
Confidence 34578888764 455542 21 1 234432 3655579999999999974
No 303
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=30.65 E-value=1.5e+02 Score=23.49 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHhCccHHHHHH
Q 012358 341 VMDTAVAKHLSHAYGIMAEQVAI 363 (465)
Q Consensus 341 ~~~~~~~~~l~~~yG~~a~~v~~ 363 (465)
+++...+..|.+.||+.+.++++
T Consensus 19 gl~~~~a~kl~~~yg~~ai~~l~ 41 (94)
T PF14490_consen 19 GLSPKLAMKLYKKYGDDAIEILK 41 (94)
T ss_dssp T--HHHHHHHHHHH-TTHHHHHH
T ss_pred CCCHHHHHHHHHHHhHHHHHHHH
Confidence 39999999999999999988766
No 304
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=30.54 E-value=1.2e+02 Score=30.41 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=37.3
Q ss_pred HHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEEE-----E---------CCCCcEEEEEccEEEEccCCC
Q 012358 77 ALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIR-----N---------NLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 77 ~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~~-----d---------~~tg~~~~i~a~~VVnAaG~w 133 (465)
++.+++.| +++....+|.++...+ | +|+||.=. + ..+| .|+++|..||+++|--
T Consensus 159 ~re~~~~~~v~f~~RHrV~~l~~t~-g-rvtGv~GdVLeps~v~RG~~SSR~~~G-dFef~A~aviv~SGGI 227 (552)
T COG3573 159 LREAQRRGRVTFRFRHRVDGLTTTG-G-RVTGVRGDVLEPSDVERGQPSSREVVG-DFEFSASAVIVASGGI 227 (552)
T ss_pred HHHHHhCCceEEEeeeeccceEeeC-C-eEeeecccccCCCccccCCCccceeec-ceEEeeeeEEEecCCc
Confidence 34444455 7888899999999887 4 88887421 0 0123 3789999999999753
No 305
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=30.53 E-value=75 Score=32.84 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=45.6
Q ss_pred EEecCee-EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 60 VVYYDGQ-MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 60 ~~~~dg~-vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
++-+|+. |+|..|- .+..-|+.++..-+|+.|..+++ -|.+.| |. +|.-|...+|+|.--..
T Consensus 251 ffepd~FfvspeDLp-----~~~nGGvAvl~G~kvvkid~~d~-----~V~LnD---G~--~I~YdkcLIATG~~Pk~ 313 (659)
T KOG1346|consen 251 FFEPDGFFVSPEDLP-----KAVNGGVAVLRGRKVVKIDEEDK-----KVILND---GT--TIGYDKCLIATGVRPKK 313 (659)
T ss_pred EecCCcceeChhHCc-----ccccCceEEEeccceEEeecccC-----eEEecC---Cc--EeehhheeeecCcCccc
Confidence 3446766 6787764 44566888899999999987653 467765 65 79999999999986433
No 306
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.48 E-value=1.2e+02 Score=31.83 Aligned_cols=64 Identities=20% Similarity=0.133 Sum_probs=37.7
Q ss_pred cCeeEchhH-----HHHHHHHHHHhCCC---EEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 63 YDGQMNDSR-----LNVGLALTAALAGA---AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 63 ~dg~vdp~r-----l~~~l~~~A~~~Ga---~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
.|++.-|.| |+...+....+.|- ..+.+++++++....++ ..+-+... +|. +..||.+|+|||-
T Consensus 91 ~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~-~~~~~~~~---~g~--~~~ad~~Vlatgh 162 (474)
T COG4529 91 HDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNA-GGYLVTTA---DGP--SEIADIIVLATGH 162 (474)
T ss_pred CccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCC-ceEEEecC---CCC--eeeeeEEEEeccC
Confidence 456665543 33333333344444 44567888888876443 34445544 354 5789999999864
No 307
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=30.13 E-value=1.7e+02 Score=34.12 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=38.7
Q ss_pred HHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEE-----------ECCCCcEEEEEccEEEEccCCChH-HHhhhhcC
Q 012358 77 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIR-----------NNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQ 143 (465)
Q Consensus 77 ~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~-----------d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~ 143 (465)
++.+.+.|+++++.+.++.+. + + +++...+. ...+|+..+|.||.||.|.|.-.+ .+.+..|+
T Consensus 712 l~~aleeGVe~~~~~~p~~I~--~-g-~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL 786 (1012)
T TIGR03315 712 LEEALEDGVDFKELLSPESFE--D-G-TLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGI 786 (1012)
T ss_pred HHHHHHcCCEEEeCCceEEEE--C-C-eEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCc
Confidence 345567899999888887775 2 2 33321110 011366668999999999997643 33344443
No 308
>PLN03000 amine oxidase
Probab=29.45 E-value=1.1e+02 Score=35.07 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
.++.+|++. ..|+.+++|+.|...++ +|++.. .++ ++.||+||+|.=+.
T Consensus 382 ~LieaLa~~-----L~I~Ln~~Vt~I~~~~d-----gV~V~~--~~~--~~~AD~VIvTVPlg 430 (881)
T PLN03000 382 RLVQALAEN-----VPILYEKTVQTIRYGSN-----GVKVIA--GNQ--VYEGDMVLCTVPLG 430 (881)
T ss_pred HHHHHHHhh-----CCcccCCcEEEEEECCC-----eEEEEE--CCc--EEEeceEEEcCCHH
Confidence 355555543 24889999999998764 244443 222 69999999998554
No 309
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=28.26 E-value=1.5e+02 Score=31.27 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=32.1
Q ss_pred CCCEE-EcceeEEEEEEcCCCCeEEEEEEEEC--------------CCCcEEEEEccEEEEccCCC
Q 012358 83 AGAAV-LNHAEVISLIKDEASNRIIGARIRNN--------------LSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 83 ~Ga~i-~~~t~V~~i~~~~~g~~v~gV~~~d~--------------~tg~~~~i~a~~VVnAaG~w 133 (465)
.|+.+ ++.+.+..|..+++| ++.+|++... ..|+..+|.||.||.|.|.-
T Consensus 349 ~gv~~~~~~~~~~~i~~~~~g-~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~ 413 (485)
T TIGR01317 349 YGRDPREYSILTKEFIGDDEG-KVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFV 413 (485)
T ss_pred cCccceEEecCcEEEEEcCCC-eEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcC
Confidence 46543 456777888654334 7777764210 12445589999999999964
No 310
>PLN02852 ferredoxin-NADP+ reductase
Probab=27.41 E-value=2e+02 Score=30.56 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=37.1
Q ss_pred CCCEEEcceeEEEEEEc--CCCCeEEEEEEEEC--------------CCCcEEEEEccEEEEccCCCh
Q 012358 83 AGAAVLNHAEVISLIKD--EASNRIIGARIRNN--------------LSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 83 ~Ga~i~~~t~V~~i~~~--~~g~~v~gV~~~d~--------------~tg~~~~i~a~~VVnAaG~wa 134 (465)
.|+.+.+....+.|... ++| +|.++++... .+|+..+|.||.||.|-|.-+
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~-~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~ 354 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNG-HVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKS 354 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCC-cEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCC
Confidence 57888888888888742 224 7888877521 156667899999999999754
No 311
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=27.16 E-value=2.5e+02 Score=28.06 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEE--EEEEECCCCcEEEEEccEEEEccCCChH-HHhhh
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIG--ARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKL 140 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~g--V~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~ 140 (465)
..+...+.+...++|++++.++++.++....+ .... +... .+. .+.+|.++++.|...+ .+...
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~--~~~~~~~~~~---~~~--~~~~d~~~~~~g~~p~~~l~~~ 244 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGKGN--TLVVERVVGI---DGE--EIKADLVIIGPGERPNVVLAND 244 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEcccC--cceeeEEEEe---CCc--EEEeeEEEEeecccccHHHHhh
Confidence 45677777888899999999999999987543 3332 2322 243 6999999999998874 44433
No 312
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.00 E-value=2.2e+02 Score=29.93 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=43.2
Q ss_pred hhHHHHHHHHH-HHhCCC--EEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 69 DSRLNVGLALT-AALAGA--AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 69 p~rl~~~l~~~-A~~~Ga--~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+.+-...+++. |...+. .|.++++|..+...++| -|.|.+.+..+. ..+.-+|.||+|+|-+.
T Consensus 88 ~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~g--kW~V~~~~~~~~-~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 88 SHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKG--KWRVTTKDNGTQ-IEEEIFDAVVVCTGHYV 153 (448)
T ss_pred CHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCC--ceeEEEecCCcc-eeEEEeeEEEEcccCcC
Confidence 34355556655 555564 67888989988876522 388888764322 24678999999999985
No 313
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=26.40 E-value=95 Score=34.45 Aligned_cols=53 Identities=13% Similarity=0.030 Sum_probs=41.6
Q ss_pred CCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHH
Q 012358 371 GKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMAT 428 (465)
Q Consensus 371 ~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~ 428 (465)
-+.+|.|.++++.||+.+|+...-.|+.-+ ....+.+. .|. -|.|.+.-.++-
T Consensus 472 ~~~~c~~~~~~~~~~~~~i~~~~~~~~~~v-~~~~~~~~--gc~--~c~pa~~~~l~~ 524 (793)
T COG1251 472 NNAICGCTDLSRDEVVHLIRAKGLKTFPEV-MNVLGWKT--GCA--KCRPAINYYLAS 524 (793)
T ss_pred ccccccCcCCCHHHHHHHHHHhccCCHHHH-HHHhcccC--Ccc--eechhhccceee
Confidence 578999999999999999999999998774 66666665 454 488877766643
No 314
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=26.36 E-value=1.7e+02 Score=34.05 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=35.8
Q ss_pred HHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEE----E-------CCCCcEEEEEccEEEEccCCChH
Q 012358 77 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIR----N-------NLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 77 ~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~----d-------~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
++.+.+.|++++..+.++.+..+ | ++...... + ..+++..+|.||.||.|.|.-.+
T Consensus 714 le~AleeGVe~~~~~~p~~I~~d--G-~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pn 780 (1019)
T PRK09853 714 YEEALEDGVEFKELLNPESFDAD--G-TLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVD 780 (1019)
T ss_pred HHHHHHcCCEEEeCCceEEEEcC--C-cEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCC
Confidence 44556789999998888888532 2 33211110 0 01344568999999999998643
No 315
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=26.20 E-value=1.7e+02 Score=30.46 Aligned_cols=47 Identities=19% Similarity=0.089 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 75 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 75 ~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
.+.+...+.|++++.. +|..+.. + . +.+.. +|+ ++.+|+||+|+|..
T Consensus 95 ~~~~~l~~~gV~~~~g-~~~~v~~--~--~---v~v~~--~g~--~~~~d~lIiATGs~ 141 (446)
T TIGR01424 95 LYKRLLANAGVELLEG-RARLVGP--N--T---VEVLQ--DGT--TYTAKKILIAVGGR 141 (446)
T ss_pred HHHHHHHhCCcEEEEE-EEEEecC--C--E---EEEec--CCe--EEEcCEEEEecCCc
Confidence 3444456789998764 5665532 1 2 33321 243 69999999999975
No 316
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=25.73 E-value=2.1e+02 Score=30.08 Aligned_cols=49 Identities=18% Similarity=0.034 Sum_probs=29.3
Q ss_pred HHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 79 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 79 ~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.....|++++.. ++..+...+++ +.|.+.+. .+ .++++|.||+|+|.-.
T Consensus 109 ~~~~~~v~~~~g-~~~~~~~~~~~---~~v~v~~~-~~--~~~~~d~lViATGs~p 157 (475)
T PRK06327 109 LFKKNKITVLKG-RGSFVGKTDAG---YEIKVTGE-DE--TVITAKHVIIATGSEP 157 (475)
T ss_pred HHHhCCCEEEEE-EEEEecCCCCC---CEEEEecC-CC--eEEEeCEEEEeCCCCC
Confidence 345578998854 35444433222 34555421 12 2699999999999753
No 317
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=25.67 E-value=2e+02 Score=31.41 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=41.3
Q ss_pred CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEc-cEEEEccCCC-hHHHhhhhcCC
Q 012358 84 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPF-CDSVRKLADQN 144 (465)
Q Consensus 84 Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a-~~VVnAaG~w-a~~l~~~~g~~ 144 (465)
...+..++.|+.|..+..|.+..+|..... .|..++++| +-||++||+- |++|+=+-|+-
T Consensus 268 NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~-~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIG 329 (623)
T KOG1238|consen 268 NLHISRNAAVTRVLIDPAGKRAKGVEFVRD-GGKEHTVKARKEVILSAGAINSPQLLMLSGIG 329 (623)
T ss_pred cccccccceEEEEEEcCCCceEEEEEEEec-CceeeeecccceEEEeccccCCHHHHHHcCCC
Confidence 445666778888887744436788887652 256667777 4599999986 78887665654
No 318
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=25.30 E-value=66 Score=36.24 Aligned_cols=47 Identities=19% Similarity=0.118 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
=..|...|.+.+.+.|++|+.+++|+++.. ..+.+|.||.|.|.++.
T Consensus 96 R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~--------------------~~~~~D~VVgADG~~S~ 142 (765)
T PRK08255 96 RKRLLNILQARCEELGVKLVFETEVPDDQA--------------------LAADADLVIASDGLNSR 142 (765)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccCchhh--------------------hhcCCCEEEEcCCCCHH
Confidence 346888888899999999998887765410 02578999999999974
No 319
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=25.16 E-value=2e+02 Score=29.95 Aligned_cols=48 Identities=13% Similarity=0.035 Sum_probs=29.2
Q ss_pred HHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 77 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 77 ~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
.....+.|++++..+ +..+ +. + . +.|... +|+..++.+|.||+|+|.-
T Consensus 101 ~~~~~~~~v~~~~g~-~~~~--~~-~-~-~~v~~~---~g~~~~~~~d~lviATGs~ 148 (461)
T PRK05249 101 RGQYERNRVDLIQGR-ARFV--DP-H-T-VEVECP---DGEVETLTADKIVIATGSR 148 (461)
T ss_pred HHHHHHCCCEEEEEE-EEEe--cC-C-E-EEEEeC---CCceEEEEcCEEEEcCCCC
Confidence 344567899988654 4333 22 1 2 223332 3544479999999999964
No 320
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=24.62 E-value=2.2e+02 Score=29.80 Aligned_cols=56 Identities=16% Similarity=0.046 Sum_probs=37.5
Q ss_pred chhHHHHHHHHHH-HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccC
Q 012358 68 NDSRLNVGLALTA-ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG 131 (465)
Q Consensus 68 dp~rl~~~l~~~A-~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG 131 (465)
.+..-...+.+++ .+.|..|..+.+|..|...++ +|+++.. + ..+..+|++|.+.=
T Consensus 203 ~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q~~~-----gV~Vt~~-~--~~~~~ad~~i~tiP 259 (450)
T COG1231 203 QRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQDGD-----GVTVTAD-D--VGQYVADYVLVTIP 259 (450)
T ss_pred ccCccHHHHHHHHHHHhhceEEecCceeeEEEcCC-----eEEEEeC-C--cceEEecEEEEecC
Confidence 3334445566665 456888888889999998765 3555431 2 23799999988763
No 321
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=24.38 E-value=2.2e+02 Score=29.82 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=31.0
Q ss_pred HHHHhCCCEEEcceeEEEEEEc---CCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 78 LTAALAGAAVLNHAEVISLIKD---EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 78 ~~A~~~Ga~i~~~t~V~~i~~~---~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
....+.|++++.. +++.+... ... +-+.|.+. +|+..++.+|+||+|+|...
T Consensus 100 ~~~~~~gv~~~~g-~a~~i~~~~~~~~~-~~~~v~~~---~g~~~~~~~d~lViATGs~p 154 (472)
T PRK05976 100 ALLKKGKIDVFHG-IGRILGPSIFSPMP-GTVSVETE---TGENEMIIPENLLIATGSRP 154 (472)
T ss_pred HHHHhCCCEEEEE-EEEEeCCCCCcCCc-eEEEEEeC---CCceEEEEcCEEEEeCCCCC
Confidence 3345679998875 45555432 001 12334432 35334799999999999854
No 322
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=23.61 E-value=2.2e+02 Score=29.86 Aligned_cols=45 Identities=18% Similarity=-0.013 Sum_probs=27.6
Q ss_pred HHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 80 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 80 A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
..+.|++++..+ +.-+ +.+ .|.+.. .+|+..++.+|.||+|+|..
T Consensus 103 ~~~~gV~~~~g~-a~~~--~~~-----~v~v~~-~~g~~~~~~~d~lViATGs~ 147 (471)
T PRK06467 103 AKGRKVTVVNGL-GKFT--GGN-----TLEVTG-EDGKTTVIEFDNAIIAAGSR 147 (471)
T ss_pred HHhCCCEEEEEE-EEEc--cCC-----EEEEec-CCCceEEEEcCEEEEeCCCC
Confidence 456799998654 3322 221 233332 13433579999999999974
No 323
>PRK14694 putative mercuric reductase; Provisional
Probab=23.18 E-value=1.3e+02 Score=31.66 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=27.6
Q ss_pred CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 84 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 84 Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
|++++.. +|+.+.. + . +.|.+.+ |+..++++|.||+|+|..
T Consensus 111 ~v~~~~g-~v~~id~--~--~-~~V~~~~---g~~~~~~~d~lViATGs~ 151 (468)
T PRK14694 111 AITVLNG-EARFVDE--R--T-LTVTLND---GGEQTVHFDRAFIGTGAR 151 (468)
T ss_pred CeEEEEE-EEEEecC--C--E-EEEEecC---CCeEEEECCEEEEeCCCC
Confidence 7887764 5776632 2 2 4465543 544579999999999974
No 324
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=21.44 E-value=2.2e+02 Score=29.31 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhc
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 142 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g 142 (465)
.+..++++.+.-.|++...+.++..|....+| ++.+|+.. ++ ..+++.| +|-+-+..+-.+..|
T Consensus 233 EL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~g-k~igvk~~----~~--v~~~k~v-i~dpSY~~~~~k~vg 296 (440)
T KOG1439|consen 233 ELPQGFARLSAVYGGTYMLNKPIDEINETKNG-KVIGVKSG----GE--VAKCKKV-ICDPSYFPQKVKKVG 296 (440)
T ss_pred hhhHHHHHHhhccCceeecCCceeeeeccCCc-cEEEEecC----Cc--eeecceE-EecCccchHHHHhhh
Confidence 68889999988899999999999999885445 77777643 22 4566754 566666654444444
No 325
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=21.28 E-value=2.5e+02 Score=29.41 Aligned_cols=45 Identities=18% Similarity=0.050 Sum_probs=26.7
Q ss_pred HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 81 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 81 ~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..+|++++... ..|.. .. ++ .|... +|+..++.+|.||+|+|...
T Consensus 104 ~~~~v~~~~g~--a~~~~--~~-~v-~v~~~---~g~~~~~~~d~lVIATGs~p 148 (466)
T PRK06115 104 RKNKVDWIKGW--GRLDG--VG-KV-VVKAE---DGSETQLEAKDIVIATGSEP 148 (466)
T ss_pred HhCCCEEEEEE--EEEcc--CC-EE-EEEcC---CCceEEEEeCEEEEeCCCCC
Confidence 45688877654 23322 22 22 23322 35445799999999999864
Done!