Query 012358
Match_columns 465
No_of_seqs 261 out of 2524
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 07:53:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3da1_A Glycerol-3-phosphate de 100.0 1.1E-66 3.7E-71 555.7 42.1 426 8-453 112-543 (561)
2 2rgh_A Alpha-glycerophosphate 100.0 7.6E-61 2.6E-65 511.7 47.7 429 8-458 129-569 (571)
3 2qcu_A Aerobic glycerol-3-phos 100.0 2.2E-54 7.6E-59 455.5 37.3 389 7-433 95-496 (501)
4 3dme_A Conserved exported prot 99.9 6.7E-23 2.3E-27 205.3 24.0 241 28-289 114-367 (369)
5 3nyc_A D-arginine dehydrogenas 99.9 3.9E-21 1.3E-25 193.6 26.2 232 31-291 118-357 (381)
6 1y56_B Sarcosine oxidase; dehy 99.9 2.4E-20 8.2E-25 188.4 26.7 237 31-292 113-355 (382)
7 2gf3_A MSOX, monomeric sarcosi 99.8 3.1E-19 1.1E-23 180.4 25.1 234 31-292 114-364 (389)
8 1pj5_A N,N-dimethylglycine oxi 99.8 1.4E-18 4.9E-23 193.1 27.5 234 31-292 115-379 (830)
9 3axb_A Putative oxidoreductase 99.8 2.6E-19 9.1E-24 185.0 19.4 223 36-291 154-417 (448)
10 2gag_B Heterotetrameric sarcos 99.8 5.6E-18 1.9E-22 172.2 26.3 236 31-292 133-375 (405)
11 2oln_A NIKD protein; flavoprot 99.8 1.3E-17 4.6E-22 169.3 28.2 234 31-291 117-373 (397)
12 2uzz_A N-methyl-L-tryptophan o 99.8 4.7E-18 1.6E-22 170.8 21.9 229 31-291 113-356 (372)
13 3c4n_A Uncharacterized protein 99.8 2.5E-18 8.5E-23 175.7 17.7 230 34-292 135-397 (405)
14 1ryi_A Glycine oxidase; flavop 99.8 2.9E-17 9.9E-22 165.6 23.7 227 30-291 128-361 (382)
15 3g3e_A D-amino-acid oxidase; F 99.8 3.6E-18 1.2E-22 170.7 14.1 214 31-292 113-333 (351)
16 3dje_A Fructosyl amine: oxygen 99.7 1.5E-16 5.2E-21 163.7 22.3 230 32-291 122-383 (438)
17 3pvc_A TRNA 5-methylaminomethy 99.7 4.7E-16 1.6E-20 169.4 21.1 232 32-290 380-647 (689)
18 3ps9_A TRNA 5-methylaminomethy 99.7 3.7E-16 1.3E-20 169.9 20.0 232 31-290 384-643 (676)
19 1c0p_A D-amino acid oxidase; a 99.7 1E-15 3.4E-20 153.6 17.4 203 57-292 129-357 (363)
20 3cgv_A Geranylgeranyl reductas 98.7 6E-07 2E-11 90.1 20.5 166 67-243 99-268 (397)
21 3nix_A Flavoprotein/dehydrogen 98.3 2.9E-06 1E-10 85.9 12.8 75 66-145 102-176 (421)
22 3oz2_A Digeranylgeranylglycero 98.1 0.00013 4.3E-09 72.6 19.1 206 67-290 99-316 (397)
23 2weu_A Tryptophan 5-halogenase 98.1 2.7E-05 9.1E-10 81.2 13.9 162 65-243 168-335 (511)
24 3atr_A Conserved archaeal prot 98.1 0.00035 1.2E-08 71.6 21.6 75 67-144 97-171 (453)
25 2gag_A Heterotetrameric sarcos 97.9 3.8E-06 1.3E-10 94.5 3.4 62 372-436 482-544 (965)
26 3i3l_A Alkylhalidase CMLS; fla 97.8 0.00017 5.8E-09 76.7 12.7 74 66-144 124-197 (591)
27 4e6k_G BFD, bacterioferritin-a 97.7 3E-05 1E-09 58.3 4.0 54 373-432 2-55 (73)
28 3ka7_A Oxidoreductase; structu 97.6 0.001 3.5E-08 67.1 15.5 59 69-135 195-253 (425)
29 2gmh_A Electron transfer flavo 97.6 0.0017 5.9E-08 68.8 17.8 77 67-144 141-230 (584)
30 1y56_A Hypothetical protein PH 97.6 3.8E-05 1.3E-09 79.9 4.1 64 370-437 410-473 (493)
31 2e4g_A Tryptophan halogenase; 97.6 0.00063 2.2E-08 71.6 13.5 73 65-144 189-262 (550)
32 3e1t_A Halogenase; flavoprotei 97.5 0.00078 2.7E-08 70.2 13.7 73 67-143 108-180 (512)
33 2qa2_A CABE, polyketide oxygen 97.5 0.0058 2E-07 63.4 20.0 73 67-145 104-176 (499)
34 3ihg_A RDME; flavoenzyme, anth 97.4 0.0012 4E-08 69.2 13.9 75 66-144 116-192 (535)
35 4at0_A 3-ketosteroid-delta4-5a 97.4 0.00043 1.5E-08 72.2 10.0 66 67-135 198-265 (510)
36 2qa1_A PGAE, polyketide oxygen 97.4 0.0083 2.8E-07 62.2 19.7 73 67-145 103-175 (500)
37 3fmw_A Oxygenase; mithramycin, 97.4 0.0011 3.8E-08 70.1 13.0 74 67-146 145-218 (570)
38 1y0p_A Fumarate reductase flav 97.4 0.00065 2.2E-08 71.8 11.0 71 63-135 248-318 (571)
39 1qo8_A Flavocytochrome C3 fuma 97.3 0.00078 2.7E-08 71.2 10.5 70 64-135 244-313 (566)
40 2aqj_A Tryptophan halogenase, 97.3 0.003 1E-07 66.2 14.6 73 64-143 159-231 (538)
41 2wdq_A Succinate dehydrogenase 97.2 0.0011 3.7E-08 70.4 10.5 69 68-137 141-209 (588)
42 2bs2_A Quinol-fumarate reducta 97.2 0.00092 3.1E-08 71.9 9.9 66 69-136 157-222 (660)
43 2i0z_A NAD(FAD)-utilizing dehy 97.2 0.00074 2.5E-08 69.1 8.8 69 69-144 133-211 (447)
44 1d4d_A Flavocytochrome C fumar 97.2 0.0014 4.7E-08 69.4 10.8 70 64-135 249-318 (572)
45 1rp0_A ARA6, thiazole biosynth 97.1 0.0015 5E-08 62.6 9.6 85 68-156 117-217 (284)
46 3p1w_A Rabgdi protein; GDI RAB 97.1 0.00073 2.5E-08 69.6 7.0 66 60-133 248-313 (475)
47 4dgk_A Phytoene dehydrogenase; 97.0 0.00078 2.7E-08 69.6 7.1 58 70-134 221-278 (501)
48 2bcg_G Secretory pathway GDP d 96.9 0.0012 4.3E-08 67.5 7.3 60 70-137 242-303 (453)
49 2h88_A Succinate dehydrogenase 96.9 0.0025 8.4E-08 68.0 9.8 66 69-136 154-219 (621)
50 3nlc_A Uncharacterized protein 96.8 0.002 6.7E-08 67.7 7.7 71 67-144 217-290 (549)
51 1d5t_A Guanine nucleotide diss 96.8 0.0012 4.2E-08 67.2 5.8 68 60-137 226-293 (433)
52 2x3n_A Probable FAD-dependent 96.7 0.0031 1.1E-07 63.0 7.8 70 67-144 104-175 (399)
53 1kf6_A Fumarate reductase flav 96.6 0.0048 1.6E-07 65.6 9.3 67 69-137 133-200 (602)
54 3v76_A Flavoprotein; structura 96.6 0.003 1E-07 64.1 7.0 68 68-144 130-207 (417)
55 2jbv_A Choline oxidase; alcoho 96.5 0.0019 6.6E-08 67.8 5.3 71 72-143 210-283 (546)
56 1jnr_A Adenylylsulfate reducta 96.5 0.0058 2E-07 65.5 9.0 70 67-137 148-221 (643)
57 2pyx_A Tryptophan halogenase; 96.5 0.0038 1.3E-07 65.1 7.2 73 65-144 170-243 (526)
58 3rp8_A Flavoprotein monooxygen 96.4 0.019 6.5E-07 57.4 11.8 68 66-144 123-191 (407)
59 2dkh_A 3-hydroxybenzoate hydro 96.4 0.053 1.8E-06 57.9 15.8 76 67-144 138-220 (639)
60 3gyx_A Adenylylsulfate reducta 96.4 0.0053 1.8E-07 66.0 7.7 68 67-135 163-234 (662)
61 3nrn_A Uncharacterized protein 96.2 0.0034 1.2E-07 63.3 5.0 56 69-134 188-243 (421)
62 1chu_A Protein (L-aspartate ox 96.2 0.0079 2.7E-07 63.1 7.5 69 68-136 136-210 (540)
63 1n4w_A CHOD, cholesterol oxida 96.1 0.0076 2.6E-07 62.6 7.2 68 74-142 225-297 (504)
64 2cul_A Glucose-inhibited divis 96.1 0.0086 2.9E-07 55.3 6.5 62 68-137 66-128 (232)
65 2gqf_A Hypothetical protein HI 96.1 0.014 4.7E-07 58.7 8.5 68 68-144 107-188 (401)
66 1k0i_A P-hydroxybenzoate hydro 96.1 0.016 5.4E-07 57.6 8.9 72 68-144 101-172 (394)
67 3i6d_A Protoporphyrinogen oxid 96.0 0.16 5.4E-06 51.3 16.4 54 71-134 236-289 (470)
68 1coy_A Cholesterol oxidase; ox 95.9 0.012 4.2E-07 61.1 7.3 69 73-142 229-302 (507)
69 2ywl_A Thioredoxin reductase r 95.6 0.023 7.9E-07 49.8 7.1 67 67-144 53-119 (180)
70 2r0c_A REBC; flavin adenine di 95.6 0.045 1.5E-06 57.3 10.4 72 67-145 135-206 (549)
71 3ces_A MNMG, tRNA uridine 5-ca 95.5 0.019 6.5E-07 61.1 7.2 62 65-134 119-181 (651)
72 1kdg_A CDH, cellobiose dehydro 95.5 0.0094 3.2E-07 62.5 4.8 69 74-144 199-272 (546)
73 3alj_A 2-methyl-3-hydroxypyrid 95.5 0.13 4.5E-06 50.7 12.9 66 66-143 103-168 (379)
74 3fg2_P Putative rubredoxin red 95.3 0.028 9.5E-07 56.4 7.1 69 69-144 183-252 (404)
75 3lxd_A FAD-dependent pyridine 95.2 0.036 1.2E-06 55.7 7.8 70 68-144 192-262 (415)
76 2zxi_A TRNA uridine 5-carboxym 95.1 0.033 1.1E-06 59.1 7.4 62 65-134 118-180 (637)
77 3c96_A Flavin-containing monoo 95.1 0.4 1.4E-05 47.7 15.0 72 67-143 104-177 (410)
78 2e5v_A L-aspartate oxidase; ar 94.8 0.058 2E-06 55.4 8.1 64 67-137 116-179 (472)
79 2xve_A Flavin-containing monoo 94.8 0.09 3.1E-06 53.8 9.4 67 68-135 99-167 (464)
80 1ju2_A HydroxynitrIle lyase; f 94.7 0.018 6.1E-07 60.3 4.0 66 76-143 200-271 (536)
81 3cp8_A TRNA uridine 5-carboxym 94.6 0.053 1.8E-06 57.7 7.4 63 65-135 112-175 (641)
82 1mo9_A ORF3; nucleotide bindin 94.6 0.11 3.7E-06 54.0 9.8 73 69-144 254-328 (523)
83 1trb_A Thioredoxin reductase; 94.6 0.11 3.7E-06 49.6 9.0 64 70-135 184-248 (320)
84 3nks_A Protoporphyrinogen oxid 94.4 0.038 1.3E-06 56.3 5.5 57 70-134 234-290 (477)
85 1pn0_A Phenol 2-monooxygenase; 94.0 1.2 4.2E-05 47.6 16.4 76 67-144 116-239 (665)
86 3itj_A Thioredoxin reductase 1 93.8 0.22 7.4E-06 47.7 9.4 59 75-135 213-272 (338)
87 2vvm_A Monoamine oxidase N; FA 93.8 0.081 2.8E-06 54.3 6.6 57 70-134 255-312 (495)
88 3iwa_A FAD-dependent pyridine 93.7 0.15 5.3E-06 52.0 8.5 68 69-144 201-269 (472)
89 3pl8_A Pyranose 2-oxidase; sub 93.7 0.12 4.1E-06 55.0 7.9 62 83-144 273-335 (623)
90 1vg0_A RAB proteins geranylger 93.6 0.096 3.3E-06 55.7 6.8 66 59-132 369-435 (650)
91 2v3a_A Rubredoxin reductase; a 93.5 0.087 3E-06 52.2 6.0 68 69-144 186-254 (384)
92 2bry_A NEDD9 interacting prote 93.3 0.055 1.9E-06 55.9 4.4 68 67-135 163-231 (497)
93 3ef6_A Toluene 1,2-dioxygenase 93.1 0.089 3E-06 52.8 5.4 68 69-144 184-252 (410)
94 3d1c_A Flavin-containing putat 93.1 0.17 5.7E-06 49.4 7.3 59 67-134 85-143 (369)
95 3cty_A Thioredoxin reductase; 93.1 0.27 9.3E-06 46.9 8.6 65 76-142 196-261 (319)
96 3f8d_A Thioredoxin reductase ( 93.0 0.33 1.1E-05 46.0 9.2 66 76-144 195-262 (323)
97 1q1r_A Putidaredoxin reductase 93.0 0.16 5.4E-06 51.4 7.0 69 69-144 190-261 (431)
98 3lov_A Protoporphyrinogen oxid 92.9 1.4 4.8E-05 44.5 14.2 159 71-243 237-413 (475)
99 1fl2_A Alkyl hydroperoxide red 92.8 0.37 1.3E-05 45.7 9.1 55 77-133 186-241 (310)
100 2gjc_A Thiazole biosynthetic e 92.8 0.43 1.5E-05 46.4 9.6 67 68-134 144-239 (326)
101 4a9w_A Monooxygenase; baeyer-v 92.8 0.15 5.3E-06 49.1 6.5 59 70-136 76-134 (357)
102 2gv8_A Monooxygenase; FMO, FAD 92.7 0.26 8.8E-06 49.9 8.3 62 71-135 116-178 (447)
103 1gpe_A Protein (glucose oxidas 92.6 0.11 3.8E-06 54.9 5.4 68 75-143 235-307 (587)
104 3jsk_A Cypbp37 protein; octame 92.5 0.37 1.3E-05 47.1 8.8 67 69-135 159-252 (344)
105 1xdi_A RV3303C-LPDA; reductase 92.5 0.16 5.5E-06 52.3 6.5 60 69-136 222-281 (499)
106 3qvp_A Glucose oxidase; oxidor 92.5 0.23 8E-06 52.3 7.7 69 74-144 230-304 (583)
107 3gwf_A Cyclohexanone monooxyge 92.3 0.21 7.1E-06 52.2 7.1 63 67-135 84-148 (540)
108 3s5w_A L-ornithine 5-monooxyge 92.2 0.5 1.7E-05 47.8 9.6 50 83-135 329-378 (463)
109 1fec_A Trypanothione reductase 92.1 0.17 5.7E-06 52.1 6.0 67 70-143 231-300 (490)
110 4dna_A Probable glutathione re 91.7 0.19 6.4E-06 51.2 5.8 60 69-136 210-270 (463)
111 3dgh_A TRXR-1, thioredoxin red 91.5 0.6 2E-05 47.7 9.3 63 69-133 226-288 (483)
112 3urh_A Dihydrolipoyl dehydroge 91.5 0.56 1.9E-05 48.0 9.2 63 69-134 238-300 (491)
113 1m6i_A Programmed cell death p 91.2 0.27 9.3E-06 50.6 6.4 68 69-144 225-293 (493)
114 3q9t_A Choline dehydrogenase a 90.7 0.3 1E-05 51.4 6.2 61 81-143 217-280 (577)
115 4ap3_A Steroid monooxygenase; 90.6 0.34 1.1E-05 50.7 6.5 61 68-134 97-159 (549)
116 3ab1_A Ferredoxin--NADP reduct 90.5 0.69 2.3E-05 44.9 8.4 69 71-142 203-272 (360)
117 2zbw_A Thioredoxin reductase; 90.5 1.2 4.2E-05 42.5 10.1 70 71-143 192-262 (335)
118 1v59_A Dihydrolipoamide dehydr 90.4 1.1 3.6E-05 45.7 10.0 63 70-135 224-288 (478)
119 3o0h_A Glutathione reductase; 90.4 0.39 1.3E-05 49.2 6.7 59 69-135 231-289 (484)
120 1zmd_A Dihydrolipoyl dehydroge 90.4 0.89 3.1E-05 46.2 9.4 65 69-135 219-283 (474)
121 1zk7_A HGII, reductase, mercur 90.4 0.5 1.7E-05 48.0 7.5 58 69-135 215-272 (467)
122 3ab1_A Ferredoxin--NADP reduct 90.3 0.5 1.7E-05 45.9 7.1 61 67-134 71-131 (360)
123 2q7v_A Thioredoxin reductase; 90.1 1 3.5E-05 42.9 9.0 57 76-135 193-250 (325)
124 2qae_A Lipoamide, dihydrolipoy 90.0 0.98 3.4E-05 45.8 9.4 63 69-135 214-277 (468)
125 3dgz_A Thioredoxin reductase 2 89.6 1.2 4.1E-05 45.5 9.6 63 69-133 224-286 (488)
126 1vdc_A NTR, NADPH dependent th 89.5 0.44 1.5E-05 45.6 6.0 58 67-134 67-124 (333)
127 2ivd_A PPO, PPOX, protoporphyr 89.5 0.32 1.1E-05 49.4 5.2 57 70-134 238-294 (478)
128 2q0l_A TRXR, thioredoxin reduc 89.5 1.3 4.4E-05 41.8 9.2 57 76-134 184-241 (311)
129 2wpf_A Trypanothione reductase 89.3 0.55 1.9E-05 48.3 6.8 59 70-135 235-293 (495)
130 3dk9_A Grase, GR, glutathione 89.3 1.3 4.4E-05 45.0 9.6 65 69-134 227-293 (478)
131 2q0l_A TRXR, thioredoxin reduc 89.3 0.44 1.5E-05 45.1 5.7 59 67-134 56-114 (311)
132 3r9u_A Thioredoxin reductase; 89.2 0.81 2.8E-05 43.1 7.5 51 81-134 194-244 (315)
133 3lzw_A Ferredoxin--NADP reduct 89.1 0.96 3.3E-05 42.9 8.0 63 77-142 196-259 (332)
134 3fim_B ARYL-alcohol oxidase; A 89.0 0.21 7.1E-06 52.5 3.3 69 74-144 211-287 (566)
135 3lzw_A Ferredoxin--NADP reduct 89.0 0.58 2E-05 44.5 6.3 59 67-133 64-122 (332)
136 2hqm_A GR, grase, glutathione 88.9 0.56 1.9E-05 47.9 6.5 70 69-143 225-296 (479)
137 2vou_A 2,6-dihydroxypyridine h 88.9 1.1 3.7E-05 44.3 8.5 61 71-142 100-160 (397)
138 1dxl_A Dihydrolipoamide dehydr 88.8 1.1 3.8E-05 45.4 8.6 64 69-135 217-280 (470)
139 2yqu_A 2-oxoglutarate dehydrog 88.7 0.4 1.4E-05 48.5 5.3 60 69-136 207-266 (455)
140 3f8d_A Thioredoxin reductase ( 88.6 0.67 2.3E-05 43.8 6.5 58 67-133 67-124 (323)
141 1b37_A Protein (polyamine oxid 88.5 0.25 8.4E-06 50.4 3.5 56 71-134 207-270 (472)
142 3uox_A Otemo; baeyer-villiger 88.4 0.45 1.5E-05 49.7 5.4 62 68-135 85-148 (545)
143 2xdo_A TETX2 protein; tetracyc 88.4 0.33 1.1E-05 48.2 4.2 65 67-142 125-189 (398)
144 2zbw_A Thioredoxin reductase; 88.4 0.62 2.1E-05 44.6 6.1 60 67-134 62-121 (335)
145 2eq6_A Pyruvate dehydrogenase 88.4 1.3 4.6E-05 44.8 8.9 64 69-135 209-272 (464)
146 1y56_A Hypothetical protein PH 88.2 0.25 8.5E-06 50.9 3.3 59 78-144 265-324 (493)
147 1w4x_A Phenylacetone monooxyge 88.2 0.7 2.4E-05 48.0 6.8 60 71-136 95-156 (542)
148 1fl2_A Alkyl hydroperoxide red 88.1 0.64 2.2E-05 43.9 5.9 62 67-134 53-115 (310)
149 1ges_A Glutathione reductase; 88.1 0.66 2.3E-05 46.9 6.4 68 70-144 208-278 (450)
150 4b63_A L-ornithine N5 monooxyg 88.1 1.3 4.4E-05 45.5 8.6 58 75-132 149-212 (501)
151 3oc4_A Oxidoreductase, pyridin 88.1 0.79 2.7E-05 46.3 6.9 57 69-134 188-244 (452)
152 2cdu_A NADPH oxidase; flavoenz 87.9 0.99 3.4E-05 45.6 7.5 59 69-135 190-248 (452)
153 3cgb_A Pyridine nucleotide-dis 87.8 1.3 4.6E-05 45.1 8.5 66 69-143 226-292 (480)
154 2hu9_A MERP, mercuric transpor 87.6 0.29 9.8E-06 40.7 2.6 54 367-424 67-125 (130)
155 1vdc_A NTR, NADPH dependent th 87.3 1.5 5.2E-05 41.7 8.1 55 81-135 206-260 (333)
156 1ebd_A E3BD, dihydrolipoamide 87.2 1.9 6.4E-05 43.5 9.1 62 69-135 210-271 (455)
157 3t37_A Probable dehydrogenase; 87.2 0.73 2.5E-05 47.5 6.1 58 82-143 223-281 (526)
158 3qj4_A Renalase; FAD/NAD(P)-bi 87.1 0.82 2.8E-05 44.1 6.1 51 71-132 113-163 (342)
159 2a8x_A Dihydrolipoyl dehydroge 86.7 1.8 6.3E-05 43.7 8.8 61 70-135 212-272 (464)
160 2r9z_A Glutathione amide reduc 86.6 1.3 4.4E-05 45.0 7.5 59 70-135 207-265 (463)
161 2gqw_A Ferredoxin reductase; f 86.5 1 3.5E-05 44.8 6.6 64 69-144 186-250 (408)
162 1hyu_A AHPF, alkyl hydroperoxi 86.4 1.7 5.8E-05 44.9 8.4 53 79-133 399-452 (521)
163 3s5w_A L-ornithine 5-monooxyge 86.4 1.5 5.2E-05 44.1 8.0 59 72-132 129-190 (463)
164 3k7m_X 6-hydroxy-L-nicotine ox 86.4 0.64 2.2E-05 46.3 5.0 51 75-134 208-259 (431)
165 2q7v_A Thioredoxin reductase; 86.2 1.1 3.9E-05 42.6 6.5 60 67-134 62-123 (325)
166 3lad_A Dihydrolipoamide dehydr 86.1 2.1 7.2E-05 43.4 8.9 60 69-133 220-279 (476)
167 3k30_A Histamine dehydrogenase 85.9 1.2 4.2E-05 47.7 7.3 59 70-135 567-625 (690)
168 3ics_A Coenzyme A-disulfide re 85.3 0.9 3.1E-05 47.6 5.7 66 69-144 227-293 (588)
169 1s3e_A Amine oxidase [flavin-c 85.3 0.81 2.8E-05 47.1 5.3 53 71-134 216-268 (520)
170 1yvv_A Amine oxidase, flavin-c 85.0 0.87 3E-05 43.5 5.0 45 83-134 118-162 (336)
171 2yg5_A Putrescine oxidase; oxi 85.0 1.2 4.1E-05 44.7 6.3 53 71-134 216-268 (453)
172 1onf_A GR, grase, glutathione 84.9 1.4 4.9E-05 45.1 6.9 60 70-135 217-276 (500)
173 1hyu_A AHPF, alkyl hydroperoxi 84.8 1 3.5E-05 46.6 5.8 62 67-134 264-326 (521)
174 3ntd_A FAD-dependent pyridine 84.0 1.7 6E-05 45.0 7.2 69 69-144 191-278 (565)
175 3itj_A Thioredoxin reductase 1 83.7 1.8 6.3E-05 41.0 6.7 62 67-134 81-142 (338)
176 3cty_A Thioredoxin reductase; 82.7 2.5 8.6E-05 40.0 7.2 58 67-134 69-126 (319)
177 2jae_A L-amino acid oxidase; o 81.2 2.6 8.8E-05 42.8 7.0 57 71-134 240-296 (489)
178 1nhp_A NADH peroxidase; oxidor 80.9 2.4 8.3E-05 42.6 6.6 58 69-135 190-247 (447)
179 3klj_A NAD(FAD)-dependent dehy 80.9 0.73 2.5E-05 45.7 2.7 56 67-132 59-114 (385)
180 3fbs_A Oxidoreductase; structu 80.5 1.8 6.1E-05 40.2 5.2 98 15-134 13-112 (297)
181 2bc0_A NADH oxidase; flavoprot 80.5 2.3 8E-05 43.4 6.4 56 70-134 236-291 (490)
182 2a87_A TRXR, TR, thioredoxin r 80.3 1.7 5.9E-05 41.6 5.1 51 81-134 202-252 (335)
183 1trb_A Thioredoxin reductase; 77.2 4.8 0.00016 37.8 7.2 58 67-134 59-116 (320)
184 3qfa_A Thioredoxin reductase 1 77.1 8.9 0.0003 39.3 9.7 63 69-133 249-314 (519)
185 3h8l_A NADH oxidase; membrane 77.0 1.7 5.9E-05 43.0 4.1 61 69-141 217-277 (409)
186 1nhp_A NADH peroxidase; oxidor 77.0 2.1 7.2E-05 43.0 4.8 51 78-133 64-114 (447)
187 1ojt_A Surface protein; redox- 76.8 3.3 0.00011 42.1 6.2 62 69-135 225-287 (482)
188 2cdu_A NADPH oxidase; flavoenz 76.0 2.6 8.9E-05 42.4 5.1 60 69-133 57-116 (452)
189 4fk1_A Putative thioredoxin re 75.9 3.8 0.00013 38.5 6.0 60 67-133 57-116 (304)
190 3ic9_A Dihydrolipoamide dehydr 75.3 9.9 0.00034 38.6 9.4 61 69-134 214-274 (492)
191 2a87_A TRXR, TR, thioredoxin r 75.2 3.3 0.00011 39.5 5.4 58 67-134 68-126 (335)
192 4g6h_A Rotenone-insensitive NA 75.1 3.7 0.00013 42.2 6.0 62 69-136 271-334 (502)
193 2b9w_A Putative aminooxidase; 75.0 2.7 9.1E-05 41.7 4.8 45 81-134 214-258 (424)
194 2iid_A L-amino-acid oxidase; f 74.7 3.2 0.00011 42.2 5.4 55 71-134 242-298 (498)
195 4gut_A Lysine-specific histone 74.2 2.7 9.3E-05 45.7 5.0 46 80-133 539-584 (776)
196 1rsg_A FMS1 protein; FAD bindi 72.9 1.5 5E-05 45.1 2.3 45 84-135 214-258 (516)
197 4gde_A UDP-galactopyranose mut 72.2 1.6 5.5E-05 44.4 2.4 60 70-141 222-281 (513)
198 3ntd_A FAD-dependent pyridine 71.7 7.8 0.00027 40.0 7.6 48 81-133 69-116 (565)
199 3hyw_A Sulfide-quinone reducta 71.2 6.4 0.00022 39.3 6.6 62 74-143 204-265 (430)
200 1xhc_A NADH oxidase /nitrite r 71.2 3.1 0.00011 40.6 4.2 62 70-144 183-245 (367)
201 3iwa_A FAD-dependent pyridine 71.1 6.7 0.00023 39.6 6.8 47 81-132 77-123 (472)
202 1lvl_A Dihydrolipoamide dehydr 70.6 5.3 0.00018 40.3 5.9 59 69-135 211-269 (458)
203 3ics_A Coenzyme A-disulfide re 70.6 10 0.00034 39.5 8.2 50 78-132 101-150 (588)
204 3cgb_A Pyridine nucleotide-dis 70.5 5.2 0.00018 40.6 5.9 48 81-133 104-151 (480)
205 4eqs_A Coenzyme A disulfide re 70.4 7.8 0.00027 38.8 7.1 49 80-133 67-115 (437)
206 2vdc_G Glutamate synthase [NAD 68.9 3.4 0.00012 41.9 4.0 55 77-134 309-378 (456)
207 2bc0_A NADH oxidase; flavoprot 68.9 3 0.0001 42.5 3.6 50 77-133 99-148 (490)
208 3kd9_A Coenzyme A disulfide re 66.9 8 0.00027 38.7 6.3 66 69-144 189-255 (449)
209 1gte_A Dihydropyrimidine dehyd 66.9 12 0.00042 41.9 8.4 61 78-140 378-450 (1025)
210 2z3y_A Lysine-specific histone 65.8 11 0.00038 39.9 7.5 49 83-134 409-458 (662)
211 2gag_A Heterotetrameric sarcos 65.7 11 0.00037 42.0 7.6 56 77-133 323-382 (965)
212 1cjc_A Protein (adrenodoxin re 65.2 11 0.00039 38.0 7.0 54 83-136 270-335 (460)
213 3h28_A Sulfide-quinone reducta 64.8 11 0.00036 37.5 6.7 58 72-137 202-259 (430)
214 1lqt_A FPRA; NADP+ derivative, 63.6 8.7 0.0003 38.8 5.8 51 83-136 265-328 (456)
215 3sx6_A Sulfide-quinone reducta 63.5 2.9 0.0001 41.8 2.2 59 66-135 55-113 (437)
216 4b1b_A TRXR, thioredoxin reduc 63.1 20 0.0007 37.0 8.6 57 69-133 262-318 (542)
217 3h8l_A NADH oxidase; membrane 62.0 12 0.0004 36.8 6.4 60 68-134 54-113 (409)
218 3r9u_A Thioredoxin reductase; 61.9 14 0.00049 34.2 6.7 57 66-132 58-116 (315)
219 1sez_A Protoporphyrinogen oxid 60.1 5.7 0.0002 40.2 3.7 59 71-134 244-308 (504)
220 1xhc_A NADH oxidase /nitrite r 59.8 4.2 0.00014 39.8 2.5 45 78-133 68-112 (367)
221 3hyw_A Sulfide-quinone reducta 58.1 1.6 5.3E-05 43.8 -1.0 43 80-133 66-108 (430)
222 4hb9_A Similarities with proba 58.0 7.9 0.00027 37.6 4.2 54 83-144 122-175 (412)
223 1q1r_A Putidaredoxin reductase 57.3 9.9 0.00034 37.9 4.9 47 78-134 68-114 (431)
224 3oc4_A Oxidoreductase, pyridin 56.4 23 0.00077 35.4 7.4 51 76-133 64-114 (452)
225 2x8g_A Thioredoxin glutathione 55.9 39 0.0013 35.1 9.4 62 70-134 326-395 (598)
226 4eqs_A Coenzyme A disulfide re 55.7 8.3 0.00028 38.6 4.0 63 69-143 187-250 (437)
227 3d1c_A Flavin-containing putat 55.4 13 0.00043 35.7 5.2 58 72-136 216-274 (369)
228 1ps9_A 2,4-dienoyl-COA reducta 55.2 23 0.00079 37.5 7.6 51 75-134 578-628 (671)
229 4a5l_A Thioredoxin reductase; 54.5 37 0.0013 31.3 8.3 52 80-133 198-249 (314)
230 4dsg_A UDP-galactopyranose mut 53.3 6.6 0.00022 40.0 2.8 54 69-134 215-270 (484)
231 3c4a_A Probable tryptophan hyd 52.5 3.3 0.00011 40.5 0.3 50 67-135 95-144 (381)
232 2xag_A Lysine-specific histone 52.2 29 0.00099 38.0 7.9 49 83-134 580-629 (852)
233 3q8k_A Flap endonuclease 1; he 52.1 1.3E+02 0.0045 28.8 11.8 94 341-449 239-332 (341)
234 3fbs_A Oxidoreductase; structu 50.7 15 0.00051 33.7 4.6 58 74-143 178-236 (297)
235 3ef6_A Toluene 1,2-dioxygenase 49.1 14 0.00046 36.5 4.3 45 79-133 66-110 (410)
236 1ojt_A Surface protein; redox- 48.7 24 0.00081 35.6 6.2 53 76-134 101-160 (482)
237 4a5l_A Thioredoxin reductase; 48.4 36 0.0012 31.4 7.0 58 67-133 63-120 (314)
238 3ayj_A Pro-enzyme of L-phenyla 47.9 14 0.00049 39.6 4.4 61 71-132 348-412 (721)
239 3lxd_A FAD-dependent pyridine 47.9 6.1 0.00021 39.1 1.5 54 69-132 64-117 (415)
240 3l8k_A Dihydrolipoyl dehydroge 46.8 31 0.0011 34.5 6.7 56 85-143 226-283 (466)
241 3kd9_A Coenzyme A disulfide re 45.2 17 0.00059 36.2 4.4 57 68-133 56-113 (449)
242 2gqw_A Ferredoxin reductase; f 45.1 14 0.0005 36.3 3.8 44 80-133 69-112 (408)
243 3vrd_B FCCB subunit, flavocyto 42.2 6.6 0.00023 38.5 0.7 55 81-143 213-267 (401)
244 1o94_A Tmadh, trimethylamine d 41.1 34 0.0012 36.6 6.2 54 74-134 575-646 (729)
245 3fg2_P Putative rubredoxin red 40.7 10 0.00036 37.2 1.9 45 77-132 64-108 (404)
246 1m6i_A Programmed cell death p 39.9 14 0.00048 37.5 2.8 44 81-134 101-144 (493)
247 4evu_A Putative periplasmic pr 39.6 45 0.0015 24.4 4.6 52 31-96 5-56 (72)
248 3sx6_A Sulfide-quinone reducta 38.6 39 0.0013 33.4 5.8 55 72-133 210-268 (437)
249 1v59_A Dihydrolipoamide dehydr 37.9 18 0.0006 36.4 3.1 50 76-134 102-157 (478)
250 3uox_A Otemo; baeyer-villiger 37.2 18 0.00061 37.4 3.1 45 77-134 345-391 (545)
251 2a8x_A Dihydrolipoyl dehydroge 37.0 43 0.0015 33.4 5.9 51 75-134 96-146 (464)
252 2v3a_A Rubredoxin reductase; a 34.0 52 0.0018 31.7 5.8 44 79-133 69-112 (384)
253 3vrd_B FCCB subunit, flavocyto 33.9 40 0.0014 32.6 5.0 44 80-134 65-108 (401)
254 3ory_A Flap endonuclease 1; hy 33.4 1.1E+02 0.0038 29.7 7.9 89 341-450 258-346 (363)
255 1ebd_A E3BD, dihydrolipoamide 33.2 1.1E+02 0.0039 30.1 8.3 49 76-134 97-145 (455)
256 1b43_A Protein (FEN-1); nuclea 32.8 1.7E+02 0.0057 27.9 9.1 95 341-460 244-338 (340)
257 3h28_A Sulfide-quinone reducta 32.7 6.9 0.00024 38.9 -1.0 47 76-133 62-108 (430)
258 3gwf_A Cyclohexanone monooxyge 30.6 13 0.00046 38.3 0.8 43 82-136 342-386 (540)
259 4fk1_A Putative thioredoxin re 27.0 40 0.0014 31.2 3.4 63 74-144 184-247 (304)
260 1dxl_A Dihydrolipoamide dehydr 26.8 62 0.0021 32.2 5.0 50 76-134 102-151 (470)
261 1iyr_A DFF45, DNA fragmentatio 26.5 88 0.003 24.3 4.5 32 423-454 48-79 (111)
262 4gcm_A TRXR, thioredoxin reduc 25.8 1.4E+02 0.0048 27.4 7.1 57 67-133 59-115 (312)
263 1ul1_X Flap endonuclease-1; pr 24.3 1.9E+02 0.0064 28.1 7.8 93 341-448 239-331 (379)
264 2qae_A Lipoamide, dihydrolipoy 23.9 84 0.0029 31.2 5.3 48 77-133 100-147 (468)
265 4ap3_A Steroid monooxygenase; 22.1 31 0.0011 35.6 1.7 42 81-135 354-397 (549)
No 1
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=100.00 E-value=1.1e-66 Score=555.74 Aligned_cols=426 Identities=27% Similarity=0.403 Sum_probs=336.2
Q ss_pred chHHHHHHHHHHHHHhhCCCCCCCceeeCHHHHHHhCCCccccccccCceEEEEecCeeEchhHHHHHHHHHHHhCCCEE
Q 012358 8 FEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAV 87 (465)
Q Consensus 8 ~~~~~~~~gl~lyd~l~~~~~~~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i 87 (465)
+.....+.|+.+||.+++..+.+..++++++++.+.+|.++.+ .+.|+++|+|+++||.+++.++++.|.++|++|
T Consensus 112 ~~~~~~~~g~~~~d~l~~~~~~~~~~~l~~~~~~~~~P~l~~~----~~~gg~~~~dg~vd~~~l~~~L~~~a~~~G~~i 187 (561)
T 3da1_A 112 FGKFSTSLGLKVYDYLADVRKDERRYMLNEKQTLEKEPLLRKE----NLKGGGIYVEYRTDDARLTLEIMKEAVARGAVA 187 (561)
T ss_dssp ------------------------CEEECHHHHHHHCTTSCCT----TCCEEEEEEEEECCHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHhHHHHHHHhhcccCCCCcEEECHHHHHHhCccCChh----hceeEEEecCceEcHHHHHHHHHHHHHHcCCEE
Confidence 3344567899999999877778899999999999999999875 688999999999999999999999999999999
Q ss_pred EcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCC
Q 012358 88 LNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEG 167 (465)
Q Consensus 88 ~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~ 167 (465)
+++++|+++..++ | ++++|++.|..+|+..+|+|+.||||+|+|++.+.+++|...+.++.|.||+|++++....+..
T Consensus 188 ~~~~~V~~l~~~~-g-~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~~~~~~v~p~kG~~lvl~~~~~~~~ 265 (561)
T 3da1_A 188 LNYMKVESFIYDQ-G-KVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRSKHGKYLKLSKGVHLVVDQSRFPLR 265 (561)
T ss_dssp EESEEEEEEEEET-T-EEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTCCCSSEEEEEEEEEEEEEGGGSCCS
T ss_pred EcCCEEEEEEEcC-C-eEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCCCCCceEEeccEEEEEECCccCCCc
Confidence 9999999999876 4 8999999987778778899999999999999999999987655679999999999986545555
Q ss_pred ceEEeeccCCCcEEEEEecCCeEEEcccCCCCC-CCCCCCCCHHHHHHHHHHHhhhccccCC--cCCeeEeeeeeeeccc
Q 012358 168 MGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTV-ITLLPEPHEDEIQFILDAISDYLNVKVR--RTDVLSAWSGIRPLAM 244 (465)
Q Consensus 168 ~~~~~~~~~dgr~~~~~P~~g~~liG~td~~~~-~~~~~~~~~~~i~~ll~~~~~~~~p~L~--~~~i~~~waG~RP~~~ 244 (465)
..++++.+.||+++|++||.|.++||+|++++. +++++.++++++++|++.++++| |.+. ..+|+++|+|+||++.
T Consensus 266 ~~~~~~~~~dgr~v~~iP~~g~~~iGtT~~~~~~~~~~~~~t~~~i~~ll~~~~~~~-P~l~~~~~~v~~~~aGlRPl~~ 344 (561)
T 3da1_A 266 QAVYFDTESDGRMIFAIPREGKTYIGTTDTFYDKDIASPRMTVEDRDYILAAANYMF-PSLRLTADDVESSWAGLRPLIH 344 (561)
T ss_dssp SEEEECCSSSCCCEEEEEETTEEEECCCCEEECSCTTCCCCCHHHHHHHHHHHHHHC-TTCCCCTTTEEEEEEEEEEEEE
T ss_pred eEEEeccCCCCcEEEEEecCCCEEEcCCCCccCCCcCCCCCCHHHHHHHHHHHHHhC-CCCCCChhhEEEEeEEeccccC
Confidence 666665436889899999988999999997643 45678899999999999999999 7765 8899999999999998
Q ss_pred CCCCCCCCCcccceeeeecCCCeEEEeCCchhchHHHHHHHHHHHHHcCCCCCCCCCCcccccccCCCCC-CcchHHHHH
Q 012358 245 DPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLTQNLRLVGGDGW-DPSSFTVLA 323 (465)
Q Consensus 245 d~~~~~~~~~~r~~~i~~~~~gli~v~Ggk~Tt~r~~Ae~v~d~~~~~~~l~~~~~~~t~~~~l~g~~~~-~~~~~~~~~ 323 (465)
++ +.++++++|+|.|..+.+|+|+++||||||||+|||+++|.+++.++. .++|.|+.+||+|+... ...+ ..+.
T Consensus 345 ~~-~~~~~~~sR~~~i~~~~~gli~i~Ggk~Tt~r~mAe~~~d~~~~~~~~--~~~~~t~~~~l~g~~~~~~~~~-~~~~ 420 (561)
T 3da1_A 345 EE-GKKASEISRKDEIFFSDSGLISIAGGKLTGYRKMAERTVDAVAQGLNV--NEPCTTAAIRLSGGLAEGAQGF-PRFL 420 (561)
T ss_dssp C------------CCEEECSSCCEEECCCCSTTHHHHHHHHHHHHHHHHTC--CCCCCTTSCCCTTCCTTCSTTH-HHHH
T ss_pred CC-CCCccccccceEEEecCCCeEEEeCChhhhHHHHHHHHHHHHHHhcCC--CCCCCcCCcccCCccccccccH-HHHH
Confidence 75 456788999999988778999999999999999999999999987654 36899999999998731 2211 1111
Q ss_pred HHHhhhhhccCCCcCCCCCCHHHHHHHHHHhCccHHHHHHHHhcc-CCCCccccCCCc-cHHHHHHHHHhcccCChhHHH
Q 012358 324 QQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNE-GLGKRLAHGYPF-LEAEVAYCARNEYCESAVDFV 401 (465)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~a~~v~~~~~~~-~~~~~v~~~~~~-~~aEi~~ai~~E~a~~l~D~l 401 (465)
........ ...++.+.++||+++||+++.+|++++.+. ++.. .++.++ ++|||+||++||||+|++|||
T Consensus 421 ~~~~~~~~-------~~~~~~~~~~~l~~~yG~~~~~~~~~~~~~~~~~~--~~~~~~~~~ae~~~~~~~e~a~~~~D~l 491 (561)
T 3da1_A 421 DEASRKGA-------KLGFDADEVRRLAKLYGSNVDHVLNYAYEGKEEAE--HYGLPALLLGQLQYGVEQEMVATPLDFF 491 (561)
T ss_dssp HHHHHHHH-------TTTCCHHHHHHHHHHHGGGHHHHHHHHHHTHHHHH--HTTSCHHHHHHHHHHHHHSCCCSHHHHH
T ss_pred HHHHHHhh-------ccCCCHHHHHHHHHHhcchHHHHHhhccccccccc--CCCCCcchHHHHHHHHHhhccCCHHHHH
Confidence 11111111 123899999999999999999999987643 3322 677788 999999999999999999999
Q ss_pred HhhcccCcCChHHHhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcc
Q 012358 402 ARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRRKQELQKAKEFLETFKS 453 (465)
Q Consensus 402 ~RRt~~~~~~~~~~~~~~~~v~~~~a~~lgw~~~~~~~e~~~~~~~~~~~~~ 453 (465)
.||||++|++...+..++++|+++|+++||||++++++|++.++++++.+..
T Consensus 492 ~rRt~~~~~~~~~~~~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~ 543 (561)
T 3da1_A 492 VRRTGALFFNISLVHQWKEAVLRWMAEEFSWTEEEKTRFQNELETELKMAVD 543 (561)
T ss_dssp HTTSCHHHHCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhhhcCHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999987743
No 2
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=100.00 E-value=7.6e-61 Score=511.71 Aligned_cols=429 Identities=24% Similarity=0.371 Sum_probs=346.0
Q ss_pred chHHHHHHHHHHHHHhhCC-CCCCCceeeCHHHHHHhCCCccccccccCceEEEEecCeeEchhHHHHHHHHHHHhCCCE
Q 012358 8 FEVVYYWVGLKMYDLVAGR-HLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAA 86 (465)
Q Consensus 8 ~~~~~~~~gl~lyd~l~~~-~~~~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~ 86 (465)
+..+.+..|+.+||++.+. ......++|+++++.+++|.++++ .+.|+++++|+++||.+++.++++.|.++|++
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~e~~~~~P~l~~~----~~~gg~~~~dg~v~~~~l~~~l~~~a~~~Ga~ 204 (571)
T 2rgh_A 129 FNMFSVKVAMDLYDKLANVTGTKYENYTLTPEEVLEREPFLKKE----GLKGAGVYLDFRNNDARLVIDNIKKAAEDGAY 204 (571)
T ss_dssp CCHHHHHHHHHHHHHHHTCSSSTTCCEEECHHHHHHHCTTSCCT----TEEEEEEECCEECCHHHHHHHHHHHHHHTTCE
T ss_pred ccHHHHHHHHHHHHHHhhhhccCCCcEEECHHHHHHhCcCCchh----hceEEEEecCCeEchHHHHHHHHHHHHHcCCe
Confidence 5567788999999999754 334578999999999999999875 68899999999999999999999999999999
Q ss_pred EEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCC-CceeecceeEEEeCCCCCC
Q 012358 87 VLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ-PMICPSSGVHIVLPDYYSP 165 (465)
Q Consensus 87 i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~-~~i~p~kG~~lv~~~~~~~ 165 (465)
|+++++|+++..++ + ++++|++.|..+|+..+|+|+.||||||+|++.+.++.+...+ .++.|.||+|++++....+
T Consensus 205 i~~~t~V~~l~~~~-~-~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~i~p~rG~~l~~~~~~~~ 282 (571)
T 2rgh_A 205 LVSKMKAVGFLYEG-D-QIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLNFTRPVSPKMRPTKGIHLVVDAKKLP 282 (571)
T ss_dssp EESSEEEEEEEEET-T-EEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTCCSSCCCCCBCCEEEEEEEEEGGGSC
T ss_pred EEeccEEEEEEEeC-C-EEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhhccCccCceeeccceEEEEeccccCC
Confidence 99999999999876 4 8899999876567666899999999999999999998876533 4689999999999754333
Q ss_pred CCceEEeecc-CCCcEEEEEecCCeEEEcccCCCCC-CCCCCCCCHHHHHHHHHHHhhhcccc--CCcCCeeEeeeeeee
Q 012358 166 EGMGLIVPKT-KDGRVVFMLPWLGRTVAGTTDSDTV-ITLLPEPHEDEIQFILDAISDYLNVK--VRRTDVLSAWSGIRP 241 (465)
Q Consensus 166 ~~~~~~~~~~-~dgr~~~~~P~~g~~liG~td~~~~-~~~~~~~~~~~i~~ll~~~~~~~~p~--L~~~~i~~~waG~RP 241 (465)
...+++++.. .|++.+|++|+.+.++||+|+.+++ ++.++.++++++++|++.++++| |. +...+|.+.|+|+||
T Consensus 283 ~~~~~~~~~~~~dgr~~~~~P~~~~~~iG~t~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-P~~~l~~~~v~~~waG~Rp 361 (571)
T 2rgh_A 283 VPQPTYFDTGKQDGRMVFAIPRENKTYFGTTDTDYQGDFTDPKVTQEDVDYLLDVINHRY-PEANITLADIEASWAGLRP 361 (571)
T ss_dssp CSSCEEEECSSSSSCEEEEEEETTEEEECCCCEECCSCSSSCCCCHHHHHHHHHHHHHHS-TTTCCCGGGCCEEEEEEEC
T ss_pred CCcEEEEeccCCCCcEEEEEEcCCeEEEcCCCcCCCCCcCCCCCCHHHHHHHHHHHHHhc-CccCCchhceeEEeEEeee
Confidence 3445566422 5788999999999999999987653 45567889999999999999999 65 578899999999999
Q ss_pred cccCCCCCCCCCcccceeeeecCCCeEEEeCCchhchHHHHHHHHHHHHHcC----CCCCCCCCCcccccccCCCCCCcc
Q 012358 242 LAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRSMAEDAVNAAIKSG----KLNPSNGCLTQNLRLVGGDGWDPS 317 (465)
Q Consensus 242 ~~~d~~~~~~~~~~r~~~i~~~~~gli~v~Ggk~Tt~r~~Ae~v~d~~~~~~----~l~~~~~~~t~~~~l~g~~~~~~~ 317 (465)
+++|+ ..++..++|+|.|..+.+|+++++||||||||.|||++++.+++.+ ++. .++|.|+.+||+|+...+..
T Consensus 362 ~~~d~-~~~~~~~~r~~~i~~~~~gl~~v~GGk~Tt~r~~Ae~~~~~i~~~l~~~~~~~-~~~~~t~~~~l~g~~~~~~~ 439 (571)
T 2rgh_A 362 LLIGN-SGSPSTISRGSSLEREPDGLLTLSGGKITDYRKMAEGALRLIRQLLKEEYGIE-TKEIDSKKYQISGGNFDPTK 439 (571)
T ss_dssp CBCC------------EEEEECTTSCEEEEECCGGGHHHHHHHHHHHHHHHHHHHHCCC-CCCCCTTTCCCTTCCSCTTC
T ss_pred ccCCC-CCCcccCCCCcEEecCCCCeEEEeCcchhhHHHHHHHHHHHHHHHhhhccCCC-CCCCCcCCCCCCCCCCCcch
Confidence 99875 2446678999988766689999999999999999999999999875 332 35899999999998633221
Q ss_pred hHHHHHHHHhhhhhccCCCcCCCCCCHHHHHHHHHHhCccHHHHHHHHhc-cCCCCccccCCC-ccHHHHHHHHHhcccC
Q 012358 318 SFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQN-EGLGKRLAHGYP-FLEAEVAYCARNEYCE 395 (465)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~a~~v~~~~~~-~~~~~~v~~~~~-~~~aEi~~ai~~E~a~ 395 (465)
+.. +..........+ .++.+.++||+++||+++.+|++++.. +++ +..+ .++|||+||+++|||+
T Consensus 440 ~~~-~~~~~~~~~~~~-------~~~~~~~~~l~~~yG~~~~~~~~~~~~~~~~-----~~~~~~~~aev~~~~~~e~a~ 506 (571)
T 2rgh_A 440 LEE-TVTELAKEGVAA-------GLEEEDATYIADFYGTNARRIFELAKEMAPY-----PGLSLAESARLRYGLEEEMVL 506 (571)
T ss_dssp HHH-HHHHHHHHHHHT-------TCCHHHHHHHHHHHGGGHHHHHHHHHTCCCC-----TTSCHHHHHHHHHHHHHSCCC
T ss_pred HHH-HHHHHHHhcccc-------CCCHHHHHHHHhcccchHHHHHhcccccccc-----cCCCcccHHHHHHHHhhccCC
Confidence 111 111111011111 389999999999999999999998754 221 1122 2679999999999999
Q ss_pred ChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccccccc
Q 012358 396 SAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRRKQELQKAKEFLETFKSSKNKQ 458 (465)
Q Consensus 396 ~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~lgw~~~~~~~e~~~~~~~~~~~~~~~~~~ 458 (465)
|++|||+||||++|++.+.+..++++|+++|+++|||+++++++|++.+++++..+....+|.
T Consensus 507 ~~~D~l~RRt~~~~~~~~~~~~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (571)
T 2rgh_A 507 APGDYLIRRTNHLLFERDQLDEIKQPVIDAIAEYFGWTEEEKAQQTKRLEALIAESDLRELKG 569 (571)
T ss_dssp SHHHHHHTTSSHHHHCGGGHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHhhhccccCccchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchhhhc
Confidence 999999999999999999999999999999999999999999999999999999888777775
No 3
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=100.00 E-value=2.2e-54 Score=455.49 Aligned_cols=389 Identities=24% Similarity=0.336 Sum_probs=321.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCCCCCceeeCHHHHHHhC--CCccccccccCceEEEEecCeeEchhHHHHHHHHHHHhCC
Q 012358 7 WFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELF--PTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAG 84 (465)
Q Consensus 7 ~~~~~~~~~gl~lyd~l~~~~~~~~~~~l~~~el~~~~--P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~~~G 84 (465)
.+..+++..|+.+||.+. ..++++++++.+++ |.++. .+.++++++|+++||.+++.++++.|.++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~P~l~~-----~~~~~~~~~~g~v~~~~l~~~l~~~a~~~G 163 (501)
T 2qcu_A 95 LRPAWMIRIGLFMYDHLG------KRTSLPGSTGLRFGANSVLKP-----EIKRGFEYSDCWVDDARLVLANAQMVVRKG 163 (501)
T ss_dssp TSCHHHHHHHHHHHHSSS------CCSSSCCCEEEECCTTSSBCT-----TCCEEEEEEEEEECHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHhcC------CcEEECHHHHHHhhcCCCcch-----hceEEEEeeCCEEcHHHHHHHHHHHHHHcC
Confidence 345566788999999875 46888999999999 99876 477888888999999999999999999999
Q ss_pred CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhh-hcCCCCCceeecceeEEEeCCCC
Q 012358 85 AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQNVQPMICPSSGVHIVLPDYY 163 (465)
Q Consensus 85 a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~-~g~~~~~~i~p~kG~~lv~~~~~ 163 (465)
++|+++++|+++..++ ++++|.+.|..+|+..+|+|+.||||+|+|++.+.+. ++.....++.|.||+|++++...
T Consensus 164 v~i~~~~~V~~l~~~~---~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l~~~~~~~i~p~rG~~~~~~~~~ 240 (501)
T 2qcu_A 164 GEVLTRTRATSARREN---GLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPYGIRLIKGSHIVVPRVH 240 (501)
T ss_dssp CEEECSEEEEEEEEET---TEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHTCCCCSSCBCCEEEEEEEEECSS
T ss_pred CEEEcCcEEEEEEEeC---CEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhccCCcccccccceeEEEEECCCC
Confidence 9999999999998864 4788988765567666899999999999999999884 44322246899999999998543
Q ss_pred CCCCceEEeeccCCCcEEEEEecC-CeEEEcccCCCCC-CCCCCCCCHHHHHHHHHHHhhhccc-cCCcCCeeEeeeeee
Q 012358 164 SPEGMGLIVPKTKDGRVVFMLPWL-GRTVAGTTDSDTV-ITLLPEPHEDEIQFILDAISDYLNV-KVRRTDVLSAWSGIR 240 (465)
Q Consensus 164 ~~~~~~~~~~~~~dgr~~~~~P~~-g~~liG~td~~~~-~~~~~~~~~~~i~~ll~~~~~~~~p-~L~~~~i~~~waG~R 240 (465)
+....++++ +.+++.+|++|+. |.+++|+|+.+.+ +++++.++++++++|++.++++| | .+...+|++.|+|+|
T Consensus 241 -~~~~~~~~~-~~dg~~~~~~P~~~g~~~iG~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-p~~l~~~~v~~~~aG~R 317 (501)
T 2qcu_A 241 -TQKQAYILQ-NEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEESEINYLLNVYNTHF-KKQLSRDDIVWTYSGVR 317 (501)
T ss_dssp -SCSCEEEEE-CTTSCEEEEEEETTTEEEEECCCEECCSCGGGCCCCHHHHHHHHHHHHHHB-SSCCCGGGCCEEEEEEE
T ss_pred -CCceEEEee-cCCCCEEEEEEcCCCcEEEcCCCCCCCCCcCCCCCCHHHHHHHHHHHHHhc-CCCCCcccEEEEEEEEe
Confidence 334455665 5678899999997 7899999987654 44567889999999999999999 7 799999999999999
Q ss_pred ecccCCCCCCCCCcccceeee--ec-C-CCeEEEeCCchhchHHHHHHHHHHHHHcCCCCCCCCCCcccccccCCCCCCc
Q 012358 241 PLAMDPSAKNTESISRDHVVC--ED-F-PGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLTQNLRLVGGDGWDP 316 (465)
Q Consensus 241 P~~~d~~~~~~~~~~r~~~i~--~~-~-~gli~v~Ggk~Tt~r~~Ae~v~d~~~~~~~l~~~~~~~t~~~~l~g~~~~~~ 316 (465)
|+++|+ .+..+.++++|.|. .. . +|+++++||||||||.|||++++.+.+.+ ...++|.|+..||+|+..+..
T Consensus 318 p~~~d~-~p~~~~~~~~~~i~~~~~~~~~gl~~i~Gg~~t~~~~~Ae~~~~~~~~~~--~~~~~~~t~~~~l~g~~~~~~ 394 (501)
T 2qcu_A 318 PLCDDE-SDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYY--QGIGPAWTKESVLPGGAIEGD 394 (501)
T ss_dssp CCBCCC-CSSGGGSCCCCEEEEEEETTEEEEEEEECCCGGGHHHHHHHHHHHHGGGS--TTCCCCCGGGCCCTTCCSSST
T ss_pred eecCCC-CCccccCcCceEEEecccCCCCCeEEEeCccccchHHHHHHHHHHHHHhh--cccCCCCcCCccCcCCCccch
Confidence 999876 34567788999887 42 2 68999999999999999999999999876 345689999999999875442
Q ss_pred c--hHHHHHHHHhhhhhccCCCcCCCCCCHHHHHHHHHHhCccHHHHHHHHh-ccCCCCccccCCCccHHHHHHHHHhcc
Q 012358 317 S--SFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQ-NEGLGKRLAHGYPFLEAEVAYCARNEY 393 (465)
Q Consensus 317 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~a~~v~~~~~-~~~~~~~v~~~~~~~~aEi~~ai~~E~ 393 (465)
. ....+...+. .++.+.+++|+++||+++.+|++++. ++++++. .|++++++||+||+++||
T Consensus 395 ~~~~~~~~~~~~~-------------~~~~~~~~~l~~~yg~~~~~~~~~~~~~~~~~~~--~~~~~~~~ei~~~~~~e~ 459 (501)
T 2qcu_A 395 RDDYAARLRRRYP-------------FLTESLARHYARTYGSNSELLLGNAGTVSDLGED--FGHEFYEAELKYLVDHEW 459 (501)
T ss_dssp TTTHHHHHHHHCT-------------TSCHHHHHHHHHHTGGGHHHHHTTCCSGGGGCCB--CSTTCBHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcc-------------CCCHHHHHHHHhhhchhHHHHHHhcccChhhccc--cCCcccHHHHHHHHHhcC
Confidence 1 1112222221 38999999999999999999998765 4577766 588999999999999999
Q ss_pred cCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHHcCCC
Q 012358 394 CESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWD 433 (465)
Q Consensus 394 a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~lgw~ 433 (465)
|.|++|+|+||||+||+. +.+|.++|+++|+++++-+
T Consensus 460 ~~~~~d~l~rRtr~~~~~---~~~~~~~v~~~~~~~~~~~ 496 (501)
T 2qcu_A 460 VRRADDALWRRTKQGMWL---NADQQSRVSQWLVEYTQQR 496 (501)
T ss_dssp CCSHHHHHHTTCCGGGTC---CHHHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHhcchhh---hHHHHHHHHHHHHHHhccc
Confidence 999999999999999954 6799999999999988754
No 4
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=99.91 E-value=6.7e-23 Score=205.31 Aligned_cols=241 Identities=18% Similarity=0.185 Sum_probs=183.5
Q ss_pred CCCCceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEE
Q 012358 28 LLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRII 106 (465)
Q Consensus 28 ~~~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~ 106 (465)
+++..++++++++.+.+|.+. ..++++.+ ++++||.+++.+|++.+.++|++|+++++|++|..+++ +.+
T Consensus 114 g~~~~~~~~~~~~~~~~p~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~--~~~ 184 (369)
T 3dme_A 114 GVDDLQHIDGAAARRLEPALH-------CTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPE--GGF 184 (369)
T ss_dssp TCCCCEEEEHHHHHHHCTTCC-------CSEEEEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTT--SSE
T ss_pred CCCceeecCHHHHHHhCCCce-------eeeeeECCCCEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCC--ceE
Confidence 344489999999999999984 34666665 68899999999999999999999999999999998764 335
Q ss_pred EEEEEECCCCcEEEEEccEEEEccCCChHHHhhhh-cCCC--CCceeecceeEEEeCCCCCCCCceEEeecc-CCCc-EE
Q 012358 107 GARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA-DQNV--QPMICPSSGVHIVLPDYYSPEGMGLIVPKT-KDGR-VV 181 (465)
Q Consensus 107 gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~-g~~~--~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~-~dgr-~~ 181 (465)
.|.+. +|+..+++||.||+|+|+|+..+.+++ |.+. ..++.|.||++++++.. .+.... +++.+ .++. ..
T Consensus 185 ~v~~~---~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~~~~~~~i~p~rG~~~~~~~~-~~~~~~-~~~~p~~~~~~~~ 259 (369)
T 3dme_A 185 ELDFG---GAEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTLAGR-APFSRL-IYPVPQHAGLGVH 259 (369)
T ss_dssp EEEEC---TTSCEEEEEEEEEECCGGGHHHHHHTEETSCGGGSCCCEEEEEEEEECSSS-CSCSSE-EEECTTCSSCCCC
T ss_pred EEEEC---CCceeEEEeCEEEECCCcchHHHHHHhcCCCccccceeeecceEEEEECCC-CccCce-eecCCCCCCceEE
Confidence 56554 354457999999999999999999998 8642 13589999999998754 233333 33323 2332 33
Q ss_pred EEEecCCeEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeee
Q 012358 182 FMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVC 261 (465)
Q Consensus 182 ~~~P~~g~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~ 261 (465)
+..++.|.+++|++.+..+ ..+..++.+.++.|++.+.++| |.+...++.+.|+|+||.+++++ ...+++.|.
T Consensus 260 ~~~~~~g~~~iG~t~e~~~-~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~v~~~w~G~Rp~~~~~~-----~~d~~p~i~ 332 (369)
T 3dme_A 260 LTLDLGGQAKFGPDTEWIA-TEDYTLDPRRADVFYAAVRSYW-PALPDGALAPGYTGIRPKISGPH-----EPAADFAIA 332 (369)
T ss_dssp EEECTTSCEEECCCCEEES-SCCCCCCGGGGGGHHHHHHTTC-TTCCTTCCEEEEEEEEEESSCTT-----SCCCCCEEE
T ss_pred EeCccCCcEEECCCccccc-ccccccCHHHHHHHHHHHHHHC-CCCChhhceecceeccccccCCC-----CCcCCeEEe
Confidence 4445678899998764311 2345678889999999999999 89999999999999999976421 113456663
Q ss_pred -e---cCCCeEEEeCC---chhchHHHHHHHHHHH
Q 012358 262 -E---DFPGLVTITGG---KWTTYRSMAEDAVNAA 289 (465)
Q Consensus 262 -~---~~~gli~v~Gg---k~Tt~r~~Ae~v~d~~ 289 (465)
. ..+|++.++|. .+|+++.+|+.+++.+
T Consensus 333 g~~~~~~~~l~~~~G~~~~G~t~ap~~a~~~a~~i 367 (369)
T 3dme_A 333 GPASHGVAGLVNLYGIESPGLTASLAIAEETLARL 367 (369)
T ss_dssp CHHHHCCTTEEEEECCCTTHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCEEEEeCCCCchHhccHHHHHHHHHHh
Confidence 1 23689999997 6999999999999987
No 5
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=99.88 E-value=3.9e-21 Score=193.59 Aligned_cols=232 Identities=19% Similarity=0.248 Sum_probs=177.7
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 109 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~ 109 (465)
+.++++++++.+.+|.++.+ ...++++++ ++++||.+++.+|++.+.++|++|+++++|++|..+++ + ++|+
T Consensus 118 ~~~~l~~~~~~~~~p~l~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~--~-~~V~ 190 (381)
T 3nyc_A 118 QMRLLDAEQACSIVPVLRRD----KVFGATYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDG--A-WEVR 190 (381)
T ss_dssp TCEEECHHHHHHHSTTBCGG----GCCCEEEETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETT--E-EEEE
T ss_pred CcEEeCHHHHHHhCCCcccc----cceEEEEcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCC--e-EEEE
Confidence 57899999999999999864 566788877 57799999999999999999999999999999998763 4 5555
Q ss_pred EEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCC-CC-CCceEEeeccCCCcEEEEEecC
Q 012358 110 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYY-SP-EGMGLIVPKTKDGRVVFMLPWL 187 (465)
Q Consensus 110 ~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~-~~-~~~~~~~~~~~dgr~~~~~P~~ 187 (465)
+. +| +|+|+.||||+|+|+..+.+++|.. +.++.|.||++++++.+. .. ...++++. .+. .+|++|+.
T Consensus 191 t~---~g---~i~a~~VV~A~G~~s~~l~~~~g~~-~~~~~p~rg~~~~~~~~~~~~~~~~p~~~~--~~~-~~y~~p~~ 260 (381)
T 3nyc_A 191 CD---AG---SYRAAVLVNAAGAWCDAIAGLAGVR-PLGLQPKRRSAFIFAPPPGIDCHDWPMLVS--LDE-SFYLKPDA 260 (381)
T ss_dssp CS---SE---EEEESEEEECCGGGHHHHHHHHTCC-CCCCEEEEEEEEEECCCTTCCCTTCCEEEE--TTS-SCEEEEET
T ss_pred eC---CC---EEEcCEEEECCChhHHHHHHHhCCC-CCceeeeEEEEEEECCCcCCCcCccceEEe--CCC-CEEEEeCC
Confidence 42 23 7999999999999999999998875 235899999999886532 11 12233332 222 36889998
Q ss_pred CeEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeec--CC
Q 012358 188 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FP 265 (465)
Q Consensus 188 g~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~--~~ 265 (465)
|.+++|++.....++.+..+++.+++.+++.+.. + |.+...++.+.|+|+||.++|+. ..|-.. .+
T Consensus 261 g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~w~G~r~~t~D~~----------p~ig~~~~~~ 328 (381)
T 3nyc_A 261 GMLLGSPANADPVEAHDVQPEQLDIATGMYLIEE-A-TTLTIRRPEHTWAGLRSFVADGD----------LVAGYAANAE 328 (381)
T ss_dssp TEEEEECCCCEECCSSCCCCCHHHHHHHHHHHHH-H-BSCCCCCCSEEEEEEEEECTTSC----------CEEEECTTST
T ss_pred CcEEEeCCcCCCCCcccCCCChHHHHHHHHHHHh-c-CCCcccceeeeeEEccccCCCCC----------ceecCCCCCC
Confidence 8888998875422334556777788889888876 5 67888889999999999998852 233222 25
Q ss_pred CeEEEeCC---chhchHHHHHHHHHHHHH
Q 012358 266 GLVTITGG---KWTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 266 gli~v~Gg---k~Tt~r~~Ae~v~d~~~~ 291 (465)
|++..+|- .+|.+..+|+.+++.+..
T Consensus 329 ~l~~a~G~~g~G~~~ap~~g~~la~~i~g 357 (381)
T 3nyc_A 329 GFFWVAAQGGYGIQTSAAMGEASAALIRH 357 (381)
T ss_dssp TEEEEECCTTCTTTTHHHHHHHHHHHHTT
T ss_pred CeEEEEcCCChhHhhCHHHHHHHHHHHhC
Confidence 77777773 389999999999998853
No 6
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.87 E-value=2.4e-20 Score=188.43 Aligned_cols=237 Identities=14% Similarity=0.178 Sum_probs=178.3
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 109 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~ 109 (465)
+.++++++++.+++|.+... .+.++++.+ ++++||.+++.+|.+.+.++|++|+++++|+++..+++ ++.+|+
T Consensus 113 ~~~~l~~~~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~--~v~gv~ 186 (382)
T 1y56_B 113 PTKLITPEEAKEIVPLLDIS----EVIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENN--EIKGVK 186 (382)
T ss_dssp CCEEECHHHHHHSSTTCCCT----TCCEEEEETTCCEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSS--BEEEEE
T ss_pred CcEEeCHHHHHHhCCCCCcc----cceEEEEcCCCeeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEECC--EEEEEE
Confidence 47899999999999998743 577777766 68899999999999999999999999999999988763 666676
Q ss_pred EEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccCCCcEEEEEecCCe
Q 012358 110 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGR 189 (465)
Q Consensus 110 ~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dgr~~~~~P~~g~ 189 (465)
+. +| +++||.||+|+|+|+..+.+++|.....++.|.+|++++++........++++. . +...+|++|+.+.
T Consensus 187 ~~---~g---~i~a~~VV~A~G~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~-~~~~~y~~p~~~g 258 (382)
T 1y56_B 187 TN---KG---IIKTGIVVNATNAWANLINAMAGIKTKIPIEPYKHQAVITQPIKRGTINPMVIS-F-KYGHAYLTQTFHG 258 (382)
T ss_dssp ET---TE---EEECSEEEECCGGGHHHHHHHHTCCSCCCCEEEEEEEEEECCCSTTSSCSEEEE-S-TTTTEEEECCSSS
T ss_pred EC---Cc---EEECCEEEECcchhHHHHHHHcCCCcCcCCCeeEeEEEEEccCCcccCCCeEEe-c-CCCeEEEEEeCCe
Confidence 52 23 699999999999999999988886511358899999888854321122134443 2 2134788998644
Q ss_pred EEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeec--CCCe
Q 012358 190 TVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGL 267 (465)
Q Consensus 190 ~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~--~~gl 267 (465)
+++|.++.......+..++.+.++.+++.+.++| |.+...++.+.|+|+||.++|+. ..|-.. .+|+
T Consensus 259 ~~iG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-p~l~~~~~~~~~~g~r~~t~d~~----------p~ig~~~~~~~~ 327 (382)
T 1y56_B 259 GIIGGIGYEIGPTYDLTPTYEFLREVSYYFTKII-PALKNLLILRTWAGYYAKTPDSN----------PAIGRIEELNDY 327 (382)
T ss_dssp CCEEECSCCBSSCCCCCCCHHHHHHHHHHHHHHC-GGGGGSEEEEEEEEEEEECTTSC----------CEEEEESSSBTE
T ss_pred EEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhC-CCcCCCCceEEEEeccccCCCCC----------cEeccCCCCCCE
Confidence 7788422111112244577889999999999999 89988899999999999998752 233222 2577
Q ss_pred EEEeCC---chhchHHHHHHHHHHHHHc
Q 012358 268 VTITGG---KWTTYRSMAEDAVNAAIKS 292 (465)
Q Consensus 268 i~v~Gg---k~Tt~r~~Ae~v~d~~~~~ 292 (465)
+..+|. .+|.++.+|+.+++.+...
T Consensus 328 ~~~~G~~g~G~~~a~~~g~~la~~i~~~ 355 (382)
T 1y56_B 328 YIAAGFSGHGFMMAPAVGEMVAELITKG 355 (382)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEecCcchHhhhHHHHHHHHHHHhCC
Confidence 766663 4899999999999999763
No 7
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=99.84 E-value=3.1e-19 Score=180.43 Aligned_cols=234 Identities=12% Similarity=0.112 Sum_probs=174.7
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 109 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~ 109 (465)
+.++++++++.+.+|.++.. ...++++.+ +++++|.+++.+|++.+.++|++++++++|+++..+++ . +.|+
T Consensus 114 ~~~~l~~~~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~--~-~~v~ 186 (389)
T 2gf3_A 114 TVDLLEGDEINKRWPGITVP----ENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPD--S-VKIE 186 (389)
T ss_dssp CCEEEETHHHHHHSTTCCCC----TTEEEEEETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSS--C-EEEE
T ss_pred CcEEcCHHHHHHhCCCcccC----CCceEEEeCCCcEEeHHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCC--e-EEEE
Confidence 46889999999999998754 566777776 68899999999999999999999999999999988653 3 3344
Q ss_pred EEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCC----CCCceEEeeccCCCcEEEEEe
Q 012358 110 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYS----PEGMGLIVPKTKDGRVVFMLP 185 (465)
Q Consensus 110 ~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~----~~~~~~~~~~~~dgr~~~~~P 185 (465)
+ ++. +++||.||+|+|+|+..+.+.++.+. ++.|.+|++++++.... ....+.++....+ ..+|++|
T Consensus 187 ~----~~g--~~~a~~vV~A~G~~~~~l~~~~g~~~--pl~~~rg~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~y~~p 257 (389)
T 2gf3_A 187 T----ANG--SYTADKLIVSMGAWNSKLLSKLNLDI--PLQPYRQVVGFFESDESKYSNDIDFPGFMVEVPN-GIYYGFP 257 (389)
T ss_dssp E----TTE--EEEEEEEEECCGGGHHHHGGGGTEEC--CCEEEEEEEEEECCCHHHHBGGGTCCEEEEEETT-EEEEEEC
T ss_pred e----CCC--EEEeCEEEEecCccHHHHhhhhccCC--ceEEEEEEEEEEecCcccccccccCCEEEEeCCC-CcEEEcC
Confidence 3 222 69999999999999999988877543 48999999999864320 0112233321222 2578899
Q ss_pred cC-C-eEEEcccCCCC---CCCCCCCC--CHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccce
Q 012358 186 WL-G-RTVAGTTDSDT---VITLLPEP--HEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDH 258 (465)
Q Consensus 186 ~~-g-~~liG~td~~~---~~~~~~~~--~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~ 258 (465)
+. + .+++|.+.... ++..+..+ ++++++.+++.+.++| |.+.. ++...|+|+||.++|.. +
T Consensus 258 ~~~g~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-P~l~~-~~~~~w~g~r~~t~D~~----------p 325 (389)
T 2gf3_A 258 SFGGCGLKLGYHTFGQKIDPDTINREFGVYPEDESNLRAFLEEYM-PGANG-ELKRGAVCMYTKTLDEH----------F 325 (389)
T ss_dssp BSTTCCEEEEESSCCEECCTTTCCCCTTSSHHHHHHHHHHHHHHC-GGGCS-CEEEEEEEEEEECTTSC----------C
T ss_pred CCCCCcEEEEEcCCCCccCcccccCccCCCHHHHHHHHHHHHHhC-CCCCC-CceEEEEEEeccCCCCC----------e
Confidence 86 4 78898765311 11223456 7889999999999999 88876 89999999999988752 3
Q ss_pred eeeec--CCCeEEEeC--C-chhchHHHHHHHHHHHHHc
Q 012358 259 VVCED--FPGLVTITG--G-KWTTYRSMAEDAVNAAIKS 292 (465)
Q Consensus 259 ~i~~~--~~gli~v~G--g-k~Tt~r~~Ae~v~d~~~~~ 292 (465)
.|-.. .+|++..+| | .+|.++.+|+.+++.+...
T Consensus 326 ~ig~~~~~~~l~~a~G~~g~G~~~ap~~g~~la~~i~~~ 364 (389)
T 2gf3_A 326 IIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTG 364 (389)
T ss_dssp EEEEETTEEEEEEEECCTTCCGGGHHHHHHHHHHHHHHS
T ss_pred EEccCCCCCCEEEEECCccccccccHHHHHHHHHHHcCC
Confidence 33222 246777777 4 4899999999999999763
No 8
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=99.82 E-value=1.4e-18 Score=193.10 Aligned_cols=234 Identities=16% Similarity=0.171 Sum_probs=180.9
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 109 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~ 109 (465)
+.++++++++.+++|.++.+ .+.++++++ ++++||.+++.+|++.+.++|++|+++++|++|..++ + ++++|.
T Consensus 115 ~~~~l~~~e~~~~~p~l~~~----~~~gg~~~~~~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~-~-~v~~V~ 188 (830)
T 1pj5_A 115 EGRLLSPAECQELYPLLDGE----NILGGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSG-G-RVTGVQ 188 (830)
T ss_dssp CCEEECHHHHHHHCTTSCGG----GCCEEEEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-T-EEEEEE
T ss_pred CeEEECHHHHHHhCccCCcc----ceEEEEEECCCceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeC-C-EEEEEE
Confidence 57899999999999999765 677888876 6889999999999999999999999999999998865 3 677776
Q ss_pred EEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCC--C-------CCCceEEeeccCCCcE
Q 012358 110 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYY--S-------PEGMGLIVPKTKDGRV 180 (465)
Q Consensus 110 ~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~--~-------~~~~~~~~~~~~dgr~ 180 (465)
+. +| +|+|+.||||+|+|+..+.+++|.+. ++.|.+|+++++.+.. . ....+++. ..++ .
T Consensus 189 t~---~G---~i~Ad~VV~AaG~~s~~l~~~~g~~~--pl~p~~g~~~~~~~~~~~~~~~~~~~~~~~pv~~--~~~~-~ 257 (830)
T 1pj5_A 189 TA---DG---VIPADIVVSCAGFWGAKIGAMIGMAV--PLLPLAHQYVKTTPVPAQQGRNDQPNGARLPILR--HQDQ-D 257 (830)
T ss_dssp ET---TE---EEECSEEEECCGGGHHHHHHTTTCCC--CCEEEEEEEEEESCCGGGTTTSCTTTCCCSCEEE--EGGG-T
T ss_pred EC---Cc---EEECCEEEECCccchHHHHHHhCCCc--cceeceeEEEEEecCcccccccccccCCCCCeEE--cCCC-C
Confidence 53 23 69999999999999999999888764 5899999998885421 0 11223332 1222 3
Q ss_pred EEEEecCCeEEEcccCCCC--------C-----------CCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeee
Q 012358 181 VFMLPWLGRTVAGTTDSDT--------V-----------ITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRP 241 (465)
Q Consensus 181 ~~~~P~~g~~liG~td~~~--------~-----------~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP 241 (465)
+|++|..+.+++|.+.... . .+.+...+.++++.+++.+.++| |.+...+|.+.|+|+||
T Consensus 258 ~y~r~~~~~l~iG~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~i~~~w~G~r~ 336 (830)
T 1pj5_A 258 LYYREHGDRYGIGSYAHRPMPVDVDTLGAYAPETVSEHHMPSRLDFTLEDFLPAWEATKQLL-PALADSEIEDGFNGIFS 336 (830)
T ss_dssp EEEEEETTEEEEEECCSCCCBCCGGGSCCCCGGGCBTTBSTTEECCCHHHHHHHHHHHHHHC-GGGGGSCEEEEEEEEEE
T ss_pred EEEEEeCCeEEEeccCCCCcccCcccccccccccccccccccccCCCHHHHHHHHHHHHHhC-ccccccCcceEEEeecc
Confidence 6788988878888764210 0 01223467889999999999999 89999999999999999
Q ss_pred cccCCCCCCCCCcccceeeeec--CCCeEEEeCCchhchHHHHHHHHHHHHHc
Q 012358 242 LAMDPSAKNTESISRDHVVCED--FPGLVTITGGKWTTYRSMAEDAVNAAIKS 292 (465)
Q Consensus 242 ~~~d~~~~~~~~~~r~~~i~~~--~~gli~v~Ggk~Tt~r~~Ae~v~d~~~~~ 292 (465)
.++|+. ..|-.. .+|++..+|..+|.+..+|+.+++.+...
T Consensus 337 ~t~D~~----------PiIG~~p~~~gl~va~G~G~~~ap~~g~~la~li~~~ 379 (830)
T 1pj5_A 337 FTPDGG----------PLLGESKELDGFYVAEAVWVTHSAGVAKAMAELLTTG 379 (830)
T ss_dssp ECTTSC----------CEEEECSSSBTEEEEESCCGGGHHHHHHHHHHHHHHS
T ss_pred cCCCCC----------eeeccCCCCCCEEEEECchHHhhHHHHHHHHHHHhCC
Confidence 998852 233222 25777777755899999999999999764
No 9
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=99.82 E-value=2.6e-19 Score=185.02 Aligned_cols=223 Identities=19% Similarity=0.188 Sum_probs=167.9
Q ss_pred CHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEE---------------c
Q 012358 36 SAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIK---------------D 99 (465)
Q Consensus 36 ~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~---------------~ 99 (465)
+++++.+ +... ...++++++ ++++||.+++.+|++.+.++|++|+++++|++|.. +
T Consensus 154 ~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~ 225 (448)
T 3axb_A 154 DGEEAEV----LGVG----DVEGAVLIRSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQ 225 (448)
T ss_dssp TSSHHHH----HTCC----CCCEEEEESSEEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTS
T ss_pred CHHHHHh----ccCC----CceEEEEeCCCeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccC
Confidence 7777766 2222 566777776 57799999999999999999999999999999987 4
Q ss_pred CCCCeEEEEEEEECCCCcEEEE--EccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCC-----------
Q 012358 100 EASNRIIGARIRNNLSGKEFDT--YAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPE----------- 166 (465)
Q Consensus 100 ~~g~~v~gV~~~d~~tg~~~~i--~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~----------- 166 (465)
+ + ++++|.+. +| +| .||.||||+|+|+..+.+++|... ++.|.||++++++......
T Consensus 226 ~-~-~v~~V~t~---~g---~i~~~Ad~VV~AtG~~s~~l~~~~g~~~--~~~p~rg~~~~~~~~~~~~~~~~~~~~~~~ 295 (448)
T 3axb_A 226 E-A-RASAAVLS---DG---TRVEVGEKLVVAAGVWSNRLLNPLGIDT--FSRPKKRMVFRVSASTEGLRRIMREGDLAG 295 (448)
T ss_dssp C-E-EEEEEEET---TS---CEEEEEEEEEECCGGGHHHHHGGGTCCC--SEEEEEEEEEEEECCSHHHHHHHHHCCTTS
T ss_pred C-C-ceEEEEeC---CC---EEeecCCEEEECCCcCHHHHHHHcCCCC--cccccceEEEEeCCcccccccccccccccc
Confidence 4 3 67777653 34 58 999999999999999999888763 5899999999986432100
Q ss_pred --CceEEeeccCCCcEEEEEecC--CeEEEcccCCCC-CCCCCC--CCCHHH-HHHHHHHHhhhccccCCcCCeeEeeee
Q 012358 167 --GMGLIVPKTKDGRVVFMLPWL--GRTVAGTTDSDT-VITLLP--EPHEDE-IQFILDAISDYLNVKVRRTDVLSAWSG 238 (465)
Q Consensus 167 --~~~~~~~~~~dgr~~~~~P~~--g~~liG~td~~~-~~~~~~--~~~~~~-i~~ll~~~~~~~~p~L~~~~i~~~waG 238 (465)
..++++. . ..+|++|+. |.+++|++.... +...+. .++.+. ++.+++.+.++| |.+...++...|+|
T Consensus 296 ~~~~p~~~~-~---~~~y~~p~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~~w~G 370 (448)
T 3axb_A 296 AGAPPLIIL-P---KRVLVRPAPREGSFWVQLSDNLGRPFALEEDPQPEEHYYSLAILPILSLYL-PQFQDAYPSGGWAG 370 (448)
T ss_dssp SSSCCEEEE-T---TTEEEEEETTTTEEEEEECCCTTSCBCCCSSCCCCHHHHHHHTHHHHHHHC-GGGTTCCCSEEEEE
T ss_pred cCCCceEEc-C---CceEEeecCCCCeEEEecCCcccCCcccccccCCChHHHHHHHHHHHHHhC-cCcccCCcccceEE
Confidence 0133332 1 347889985 478899987532 111222 577888 899999999999 89988899999999
Q ss_pred eeec-ccCCCCCCCCCcccceeeeecCCCeEEEeCC---chhchHHHHHHHHHHHHH
Q 012358 239 IRPL-AMDPSAKNTESISRDHVVCEDFPGLVTITGG---KWTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 239 ~RP~-~~d~~~~~~~~~~r~~~i~~~~~gli~v~Gg---k~Tt~r~~Ae~v~d~~~~ 291 (465)
+||. ++|+. ..|-..++|++.++|. .+|.++.+|+.+++.+..
T Consensus 371 ~r~~~t~d~~----------p~ig~~~~~l~~a~G~~g~G~~~ap~~g~~la~~i~~ 417 (448)
T 3axb_A 371 HYDISFDANP----------VVFEPWESGIVVAAGTSGSGIMKSDSIGRVAAAVALG 417 (448)
T ss_dssp EEEEETTSSC----------EEECGGGCSEEEEECCTTCCGGGHHHHHHHHHHHHTT
T ss_pred EeccccCCCC----------cEeeecCCCEEEEECCCchhHhHhHHHHHHHHHHHcC
Confidence 9999 88752 2232222677777775 599999999999999854
No 10
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=99.81 E-value=5.6e-18 Score=172.15 Aligned_cols=236 Identities=17% Similarity=0.192 Sum_probs=176.4
Q ss_pred CceeeCHHHHHHhCCCccccc-cccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKA-KDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGA 108 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~-~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV 108 (465)
+.++++++++.+.+|.+.... ......++++++ ++++||.+++..|.+.+.+.|++++.+++|+++..++ + ++++|
T Consensus 133 ~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~-~-~~~~v 210 (405)
T 2gag_B 133 DAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDG-E-KVTGV 210 (405)
T ss_dssp CCEEECHHHHHHHCTTSCCSTTSSSCCCEEEEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESS-S-BEEEE
T ss_pred CceEeCHHHHHhhCCCCcccccccccceeEEEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeC-C-EEEEE
Confidence 578899999999999886510 001466777776 6889999999999999999999999999999998875 3 67777
Q ss_pred EEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccCCCcEEEEEecC-
Q 012358 109 RIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL- 187 (465)
Q Consensus 109 ~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dgr~~~~~P~~- 187 (465)
++. +| ++.||.||+|+|+|+..+.+++|... ++.+.+|++++++.. .+...++++. .+ ..+|++|..
T Consensus 211 ~~~---~g---~~~a~~vV~a~G~~s~~l~~~~g~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~y~~p~~~ 278 (405)
T 2gag_B 211 KTT---RG---TIHAGKVALAGAGHSSVLAEMAGFEL--PIQSHPLQALVSELF-EPVHPTVVMS--NH-IHVYVSQAHK 278 (405)
T ss_dssp EET---TC---CEEEEEEEECCGGGHHHHHHHHTCCC--CEEEEEEEEEEEEEB-CSCCCSEEEE--TT-TTEEEEECTT
T ss_pred EeC---Cc---eEECCEEEECCchhHHHHHHHcCCCC--CccccceeEEEecCC-ccccCceEEe--CC-CcEEEEEcCC
Confidence 753 34 59999999999999999998888764 588999988777432 1111223332 22 347788864
Q ss_pred CeEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeec-CCC
Q 012358 188 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-FPG 266 (465)
Q Consensus 188 g~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~-~~g 266 (465)
|.+++|.+..... ..+...+.+.++.+++.+.++| |.+...++...|+|+||.++|.. +.|-.. .+|
T Consensus 279 g~~~ig~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~-p~l~~~~~~~~w~g~~~~t~d~~----------p~ig~~~~~~ 346 (405)
T 2gag_B 279 GELVMGAGIDSYN-GYGQRGAFHVIQEQMAAAVELF-PIFARAHVLRTWGGIVDTTMDAS----------PIISKTPIQN 346 (405)
T ss_dssp SEEEEEEEECSSC-CCSSCCCTHHHHHHHHHHHHHC-GGGGGCEECEEEEEEEEEETTSC----------CEEEECSSBT
T ss_pred CcEEEEeccCCCC-ccccCCCHHHHHHHHHHHHHhC-CccccCCcceEEeeccccCCCCC----------CEecccCCCC
Confidence 6788888754322 1233456778899999999999 88988889999999999988742 223222 257
Q ss_pred eEEEeCC---chhchHHHHHHHHHHHHHc
Q 012358 267 LVTITGG---KWTTYRSMAEDAVNAAIKS 292 (465)
Q Consensus 267 li~v~Gg---k~Tt~r~~Ae~v~d~~~~~ 292 (465)
++..+|. .++.+..+|+.+++.+...
T Consensus 347 l~~~~G~~g~G~~~a~~~g~~la~~i~g~ 375 (405)
T 2gag_B 347 LYVNCGWGTGGFKGTPGAGFTLAHTIAND 375 (405)
T ss_dssp EEEEECCGGGCSTTHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCchhhHHHHHHHHHHHHHhCC
Confidence 7666663 4899999999999999763
No 11
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=99.80 E-value=1.3e-17 Score=169.31 Aligned_cols=234 Identities=12% Similarity=0.054 Sum_probs=171.2
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 109 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~ 109 (465)
+.++++++++.+.+|.+... ...++++.+ +++++|.+++.+|++.+.++|++|+++++|++|..+++ .+ .|.
T Consensus 117 ~~~~l~~~~~~~~~p~~~~~----~~~~~~~~~~~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~--~v-~v~ 189 (397)
T 2oln_A 117 RYEWLKATDIERRFGFRGLP----RDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPDAD--GV-SVT 189 (397)
T ss_dssp CCEEEEHHHHHHHHCCCSCC----TTCEEEEETTCEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETT--EE-EEE
T ss_pred CceecCHHHHHhhCcCccCC----CceeEEEcCCCCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEcCC--eE-EEE
Confidence 45788999999999988653 456677776 57899999999999999999999999999999988653 32 243
Q ss_pred EEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccCCCc----EEEEEe
Q 012358 110 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGR----VVFMLP 185 (465)
Q Consensus 110 ~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dgr----~~~~~P 185 (465)
+. .| +|+|+.||+|+|+|+..+.+++|... ++.+.+|+++.++........+.++....+++ .+|++|
T Consensus 190 t~---~g---~i~a~~VV~A~G~~s~~l~~~~g~~~--p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~y~~p 261 (397)
T 2oln_A 190 TD---RG---TYRAGKVVLACGPYTNDLLEPLGARL--AYSVYEMAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFYGFG 261 (397)
T ss_dssp ES---SC---EEEEEEEEECCGGGHHHHHGGGTCCC--CEEEEEEEEEEEEBCSCCSCCCEEEEECCCCSSSCCCEEECC
T ss_pred EC---CC---EEEcCEEEEcCCcChHHHhhhcCCCC--CeeEEEEEEEEEeecCcccCCCEEEEecCCCCcccceEEECC
Confidence 21 23 69999999999999999998888754 58999999988853321112223332122332 578889
Q ss_pred cC-C----eEEEcccCC-CC---CCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeee--cccCCCCCCCCCc
Q 012358 186 WL-G----RTVAGTTDS-DT---VITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRP--LAMDPSAKNTESI 254 (465)
Q Consensus 186 ~~-g----~~liG~td~-~~---~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP--~~~d~~~~~~~~~ 254 (465)
+. + .+++|++.. .. ++..+..++++.++.+++.+.++| |.+.. .+...|+|+++ .++|..
T Consensus 262 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-p~l~~-~~~~~~~g~~~~p~t~D~~------- 332 (397)
T 2oln_A 262 HNPWAPGEFVRCGPDFEVDPLDHPSAATGVADRRQMDRLSGWLRDHL-PTVDP-DPVRTSTCLAVLPTDPERQ------- 332 (397)
T ss_dssp CCSSSSSSEEEEEECCCCSCCSSGGGCCSSCCHHHHHHHHHHHHHHC-TTBCS-SCSEEEEEEEEEESSTTCC-------
T ss_pred CCCCCCCceEEEEecCCCCCcCCCccccCCCCHHHHHHHHHHHHHhC-CCCCC-CceeEEEEEecCCcCCCCC-------
Confidence 74 3 578987653 11 122245577889999999999999 88876 78889999987 887752
Q ss_pred ccceeeeec------CCCeEEEeCCc-hhchHHHHHHHHHHHHH
Q 012358 255 SRDHVVCED------FPGLVTITGGK-WTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 255 ~r~~~i~~~------~~gli~v~Ggk-~Tt~r~~Ae~v~d~~~~ 291 (465)
+.|-.. .+|++..+||. +|.+..+|+.+++.+..
T Consensus 333 ---p~ig~~~~~~~~~~~l~~a~Gg~G~~~ap~~g~~la~~i~~ 373 (397)
T 2oln_A 333 ---FFLGTARDLMTHGEKLVVYGAGWAFKFVPLFGRICADLAVE 373 (397)
T ss_dssp ---CEEEESTTTSTTGGGEEEEEESSCGGGHHHHHHHHHHHHHH
T ss_pred ---eEeecCCccccCCCCEEEEeCcchhhccHHHHHHHHHHHhC
Confidence 223221 24666667753 79999999999999976
No 12
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=99.79 E-value=4.7e-18 Score=170.83 Aligned_cols=229 Identities=14% Similarity=0.056 Sum_probs=165.6
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 109 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~ 109 (465)
+.++++++++.+++|.++.. ...++++.+ ++++||.+++.+|++.+.+.|++++++++|++|..+++ + +.|+
T Consensus 113 ~~~~l~~~~~~~~~p~~~~~----~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~--~-~~v~ 185 (372)
T 2uzz_A 113 NVEKLDAQGIMARWPEIRVP----DNYIGLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDD--G-VTIE 185 (372)
T ss_dssp CEEEEEHHHHHHHCTTCCCC----TTEEEEEESSCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSS--S-EEEE
T ss_pred CcEecCHHHHHhhCCCccCC----CCceEEEeCCCcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCC--E-EEEE
Confidence 47899999999999997643 445666665 78899999999999999999999999999999988654 3 3454
Q ss_pred EEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCC--C-CCCceEEeeccCCCcEEEEEec
Q 012358 110 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYY--S-PEGMGLIVPKTKDGRVVFMLPW 186 (465)
Q Consensus 110 ~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~--~-~~~~~~~~~~~~dgr~~~~~P~ 186 (465)
+. +| ++.||.||+|+|+|+..+.. . .++.|.||+++.+.... . ....+.+.....++..+|++|.
T Consensus 186 ~~---~g---~~~a~~vV~a~G~~s~~l~~----~--l~~~p~rg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~ 253 (372)
T 2uzz_A 186 TA---DG---EYQAKKAIVCAGTWVKDLLP----E--LPVQPVRKVFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPA 253 (372)
T ss_dssp ES---SC---EEEEEEEEECCGGGGGGTST----T--CCCEEEECCEEEECCCGGGSTTTTCCEEEEECTTCCEEEEECC
T ss_pred EC---CC---eEEcCEEEEcCCccHHhhcc----c--cCceEEEEEEEEEEeccccCccccCCEEEEecCCCCeEEecCC
Confidence 32 34 59999999999999998865 2 24789999887775321 1 0112233222235556788898
Q ss_pred C-CeEEEcccCCC--CC---CCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceee
Q 012358 187 L-GRTVAGTTDSD--TV---ITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVV 260 (465)
Q Consensus 187 ~-g~~liG~td~~--~~---~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i 260 (465)
. +.+++|.+... .+ +..+..++++.++.+++.+.++| |.+. ++...|+|+||.++|+. ..|
T Consensus 254 ~~~~~~iG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-P~l~--~~~~~~~g~r~~t~d~~----------p~i 320 (372)
T 2uzz_A 254 ENDALKIGKHNGGQVIHSADERVPFAEVVSDGSEAFPFLRNVL-PGIG--CCLYGAACTYDNSPDED----------FII 320 (372)
T ss_dssp SSSCEEEEESSCCEECCSGGGCCCTTTSTTGGGSSHHHHHHHS-CSCC--CEEEECCCEEEECTTSC----------CCE
T ss_pred CCCeEEEEecCCCCccCChhhccCCCCCHHHHHHHHHHHHHHC-CCCC--ccceeeEEeeccCCCCC----------eEE
Confidence 5 67888986521 11 11223344567788999999999 8886 78899999999998752 222
Q ss_pred eec--CCCeEEEeCC---chhchHHHHHHHHHHHHH
Q 012358 261 CED--FPGLVTITGG---KWTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 261 ~~~--~~gli~v~Gg---k~Tt~r~~Ae~v~d~~~~ 291 (465)
-.. .+|++..+|. .+|.++.+|+.+++.+..
T Consensus 321 g~~~~~~~l~~~~G~~g~G~~~ap~~g~~la~~i~~ 356 (372)
T 2uzz_A 321 DTLPGHDNTLLITGLSGHGFKFASVLGEIAADFAQD 356 (372)
T ss_dssp EEETTEEEEEEECCCCSCCGGGHHHHHHHHHHHHTT
T ss_pred ecCCCCCCEEEEeCCCccchhccHHHHHHHHHHHhC
Confidence 221 2467766663 489999999999999864
No 13
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=99.78 E-value=2.5e-18 Score=175.66 Aligned_cols=230 Identities=15% Similarity=0.043 Sum_probs=159.9
Q ss_pred eeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEE---------EEEEcCCCC
Q 012358 34 YYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVI---------SLIKDEASN 103 (465)
Q Consensus 34 ~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~---------~i~~~~~g~ 103 (465)
+++++++.+.+|.+....+.+...++++.+ ++++||.+++.+|++.+.++|++++++++|+ ++..+++
T Consensus 135 ~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~-- 212 (405)
T 3c4n_A 135 LTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNT-- 212 (405)
T ss_dssp CEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-----
T ss_pred CCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCC--
Confidence 678899988998876200001456676665 7889999999999999999999999999999 8876543
Q ss_pred eEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhh-hhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccCCCcEEE
Q 012358 104 RIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK-LADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVF 182 (465)
Q Consensus 104 ~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~-~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dgr~~~ 182 (465)
++ +|.+. +| +|+||.||+|+|+|+..+.+ ++|... ++.|.+|+++.++.+.. ...+++. + +.+|
T Consensus 213 ~v-~v~~~---~g---~i~a~~VV~A~G~~s~~l~~~~~g~~~--~~~~~~g~~~~~~~~~~-~~~~~~~----~-~~~y 277 (405)
T 3c4n_A 213 HQ-IVVHE---TR---QIRAGVIIVAAGAAGPALVEQGLGLHT--RHGRAYRQFPRLDLLSG-AQTPVLR----A-SGLT 277 (405)
T ss_dssp -----CBC---CE---EEEEEEEEECCGGGHHHHHHHHHCCCC--CCEEEEEECCEECSCCC-TTCCEEE----E-TTEE
T ss_pred eE-EEEEC---Cc---EEECCEEEECCCccHHHHHHHhcCCCC--CcccceeEEEEECCCCc-cCCCeEE----C-CcEE
Confidence 43 55432 22 79999999999999999988 888764 47889999888754321 1223333 1 2378
Q ss_pred EEecC-CeEEEcccCC--CCC-CC-------CCCCCCHHHHHHHHHHHhhhccccCCcCC---------eeEeeeeeeec
Q 012358 183 MLPWL-GRTVAGTTDS--DTV-IT-------LLPEPHEDEIQFILDAISDYLNVKVRRTD---------VLSAWSGIRPL 242 (465)
Q Consensus 183 ~~P~~-g~~liG~td~--~~~-~~-------~~~~~~~~~i~~ll~~~~~~~~p~L~~~~---------i~~~waG~RP~ 242 (465)
++|+. |.+++|++.. ... +. .+...+.+.++.+++.+ ++| |.+.... |...|+|+||.
T Consensus 278 ~~p~~~g~~~~G~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-P~l~~~~~~~~r~~~~i~~~w~G~r~~ 355 (405)
T 3c4n_A 278 LRPQNGGYTLVPAIHHRDPHGYHPAGGSLTGVPTGLRRELLEDLVGLM-DAV-PALAGEGLELGRSSADVPGAWLALPGG 355 (405)
T ss_dssp EEEETTEEEEECCCCSCBCSSCCCCCCCBTTBCCSSCHHHHHHHHHHT-TTC-GGGGSSCBCCCSSGGGSCEEEEEEGGG
T ss_pred EEEcCCCeEEEeccccccccCcCcccccccccccCCCHHHHHHHHHHH-HhC-CCccccCccccccccceeeEEEeecCc
Confidence 99996 4677888743 111 10 11345577788888664 888 7776543 88999999999
Q ss_pred ccCCCCCCCCCcccceeeeecCCCeEEEeCC--chhchHHHHHHHHHHHHHc
Q 012358 243 AMDPSAKNTESISRDHVVCEDFPGLVTITGG--KWTTYRSMAEDAVNAAIKS 292 (465)
Q Consensus 243 ~~d~~~~~~~~~~r~~~i~~~~~gli~v~Gg--k~Tt~r~~Ae~v~d~~~~~ 292 (465)
++|+. ..|-..++|++..+|. .+|.++.+|+.+++.+...
T Consensus 356 t~D~~----------P~ig~~~~gl~~a~G~~g~~~~ap~~a~~la~~i~~~ 397 (405)
T 3c4n_A 356 RPDAP----------PQAEELAPGLHLLLGGPLADTLGLAAAHELAQRVSAS 397 (405)
T ss_dssp CTTCC----------CEEEEEETTEEEEECCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC----------CEecccCCCeEEEEccCcHHHHHHHHHHHHHHHHhCc
Confidence 98752 2222222677777664 3899999999999999763
No 14
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=99.77 E-value=2.9e-17 Score=165.64 Aligned_cols=227 Identities=19% Similarity=0.235 Sum_probs=172.2
Q ss_pred CCceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEE
Q 012358 30 HLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGA 108 (465)
Q Consensus 30 ~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV 108 (465)
...++++++++.+.+|.+.. ...++++++ +++++|.+++..|.+.+.+.|++++.+++|++|..+++ ++ +|
T Consensus 128 ~~~~~l~~~~~~~~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~--~~-~v 199 (382)
T 1ryi_A 128 DSVSWYSKEEVLEKEPYASG-----DIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGE--AL-FI 199 (382)
T ss_dssp TTEEEEEHHHHHHHCTTSCT-----TCCEEEEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSS--SE-EE
T ss_pred CCeEEECHHHHHHhCCCCCc-----ccceEEEeCCCeEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECC--EE-EE
Confidence 36788999999999999875 567788776 57899999999999999999999999999999987653 44 55
Q ss_pred EEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccCCCcEEEEEecC-
Q 012358 109 RIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL- 187 (465)
Q Consensus 109 ~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dgr~~~~~P~~- 187 (465)
.+. +| +++||.||+|+|+|+..+.+.++... ++.|.+|+++.++........ +++. + ..|++|..
T Consensus 200 ~~~---~g---~~~a~~vV~A~G~~s~~l~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~-~~~~---~--~~~~~p~~~ 265 (382)
T 1ryi_A 200 KTP---SG---DVWANHVVVASGVWSGMFFKQLGLNN--AFLPVKGECLSVWNDDIPLTK-TLYH---D--HCYIVPRKS 265 (382)
T ss_dssp EET---TE---EEEEEEEEECCGGGTHHHHHHTTCCC--CCEEEEEEEEEEECCSSCCCS-EEEE---T--TEEEEECTT
T ss_pred EcC---Cc---eEEcCEEEECCChhHHHHHHhcCCCC--ceeccceEEEEECCCCCCccc-eEEc---C--CEEEEEcCC
Confidence 542 23 69999999999999999988887653 588999999888543222222 3332 2 26788985
Q ss_pred CeEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeec--CC
Q 012358 188 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FP 265 (465)
Q Consensus 188 g~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~--~~ 265 (465)
+.+++|.+.... ..+..++++..+.+++.+.++| |.+...++...|+|+||.++|+. ..|-.. .+
T Consensus 266 g~~~vG~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-p~l~~~~~~~~w~g~~~~t~d~~----------p~ig~~~~~~ 332 (382)
T 1ryi_A 266 GRLVVGATMKPG--DWSETPDLGGLESVMKKAKTML-PAIQNMKVDRFWAGLRPGTKDGK----------PYIGRHPEDS 332 (382)
T ss_dssp SEEEEECCCEET--CCCCSCCHHHHHHHHHHHHHHC-GGGGGSEEEEEEEEEEEECSSSC----------CEEEEETTEE
T ss_pred CeEEEeeccccc--CCCCCCCHHHHHHHHHHHHHhC-CCcCCCceeeEEEEecccCCCCC----------cEeccCCCcC
Confidence 678899875432 2234567888999999999999 88888889999999999987752 222211 13
Q ss_pred CeEEEeC--C-chhchHHHHHHHHHHHHH
Q 012358 266 GLVTITG--G-KWTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 266 gli~v~G--g-k~Tt~r~~Ae~v~d~~~~ 291 (465)
|++.+.| | .++.+..+|+.+++.+..
T Consensus 333 ~l~~~~G~~g~G~~~a~~~g~~la~~i~~ 361 (382)
T 1ryi_A 333 RILFAAGHFRNGILLAPATGALISDLIMN 361 (382)
T ss_dssp EEEEEECCSSCTTTTHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCcchHHHhHHHHHHHHHHHhC
Confidence 5555554 2 489999999999998853
No 15
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=99.76 E-value=3.6e-18 Score=170.70 Aligned_cols=214 Identities=12% Similarity=0.095 Sum_probs=158.2
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARI 110 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~ 110 (465)
+.++++++|+ +.+|. +.++++++++++||.+++.+|++.+.++|++|++ ++|+++...
T Consensus 113 ~~~~l~~~e~-~~~p~---------~~~~~~~~~~~v~p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~----------- 170 (351)
T 3g3e_A 113 GFRKLTPREL-DMFPD---------YGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQ-RKVESFEEV----------- 170 (351)
T ss_dssp EEEECCHHHH-TTCTT---------CCEEEEEEEEEECHHHHHHHHHHHHHHTTCEEEE-CCCCCHHHH-----------
T ss_pred CceECCHHHh-ccCCC---------CceEEEecceEEcHHHHHHHHHHHHHHCCCEEEE-EEeCCHHHh-----------
Confidence 4678899998 56774 4567777888999999999999999999999988 888776321
Q ss_pred EECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeec--cCCCcEEEEEecCC
Q 012358 111 RNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPK--TKDGRVVFMLPWLG 188 (465)
Q Consensus 111 ~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~--~~dgr~~~~~P~~g 188 (465)
+ .++|+.||||+|+|+..+.+. .++.|.||++++++.+. ....++... ..+++.+|++|+.+
T Consensus 171 -----~---~~~a~~VV~A~G~~s~~l~~~------~~l~p~rg~~~~~~~~~--~~~~~~~~~~~~~~~~~~y~~p~~~ 234 (351)
T 3g3e_A 171 -----A---REGADVIVNCTGVWAGALQRD------PLLQPGRGQIMKVDAPW--MKHFILTHDPERGIYNSPYIIPGTQ 234 (351)
T ss_dssp -----H---HTTCSEEEECCGGGGGGTSCC------TTCEEEEEEEEEEECTT--CCSEEEECCTTTCTTCSCEEEECSS
T ss_pred -----h---cCCCCEEEECCCcChHhhcCC------CceeecCCcEEEEeCCC--cceEEEeccccCCCCceeEEEeCCC
Confidence 1 267999999999999988642 35899999999986542 233333211 12334578999987
Q ss_pred eEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeec--CCC
Q 012358 189 RTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPG 266 (465)
Q Consensus 189 ~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~--~~g 266 (465)
.+++|++.... ..+..++++.++.+++.+.++| |.+...+|.+.|+|+||.++| .+. ....|-.. .+|
T Consensus 235 ~~~iGg~~~~~--~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~i~~~w~G~r~~t~D-~p~------~~~~ig~~~~~~~ 304 (351)
T 3g3e_A 235 TVTLGGIFQLG--NWSELNNIQDHNTIWEGCCRLE-PTLKNARIIGERTGFRPVRPQ-IRL------EREQLRTGPSNTE 304 (351)
T ss_dssp CEEEECCCEET--CCCCSCCHHHHHHHHHHHHHHC-GGGGGCEEEEEEEEEEEECSS-CEE------EEEEECCSSSCEE
T ss_pred cEEEeeeeecC--CCCCCCCHHHHHHHHHHHHHhC-CCccCCcEeeeeEeeCCCCCC-ccc------eeeeccCCCCCCe
Confidence 88899887542 2344678899999999999999 899889999999999999876 210 01112111 246
Q ss_pred eEEEeCC---chhchHHHHHHHHHHHHHc
Q 012358 267 LVTITGG---KWTTYRSMAEDAVNAAIKS 292 (465)
Q Consensus 267 li~v~Gg---k~Tt~r~~Ae~v~d~~~~~ 292 (465)
++..+|- .+|.+..+|+.+++.+.+.
T Consensus 305 ~~~~~G~~g~G~~~ap~~g~~la~li~~~ 333 (351)
T 3g3e_A 305 VIHNYGHGGYGLTIHWGCALEAAKLFGRI 333 (351)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcchHhhhHHHHHHHHHHHHHH
Confidence 7666663 4888899999888888654
No 16
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=99.74 E-value=1.5e-16 Score=163.69 Aligned_cols=230 Identities=14% Similarity=0.098 Sum_probs=161.3
Q ss_pred ceeeCHHHHHHhCCC-ccccccccCceE--EEEec-C-eeEchhHHHHHHHHHHHhCCCEEEcce---eEEEEEEcCCCC
Q 012358 32 SRYYSAQESAELFPT-LAMKAKDRSLKG--AVVYY-D-GQMNDSRLNVGLALTAALAGAAVLNHA---EVISLIKDEASN 103 (465)
Q Consensus 32 ~~~l~~~el~~~~P~-l~~~~~~~~l~g--a~~~~-d-g~vdp~rl~~~l~~~A~~~Ga~i~~~t---~V~~i~~~~~g~ 103 (465)
.++++++++.+.+|. +... .+.+ +++++ + ++++|..++.+|++.+.++|++|++++ +|++|..++ +
T Consensus 122 ~~~l~~~~~~~~~p~~l~~~----~~~g~~g~~~~~~~g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~-~- 195 (438)
T 3dje_A 122 VELTRPEQFRKLAPEGVLQG----DFPGWKGYFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFEN-N- 195 (438)
T ss_dssp EEECSHHHHHTTSCTTTSCS----CCTTCEEEEESSSCEEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEET-T-
T ss_pred eecCCHHHHHHhCCcccccC----CCCCceEEEeCCCCEEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecC-C-
Confidence 388899999999998 7433 4555 66665 6 789999999999999999999999999 999998876 3
Q ss_pred eEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEE--eCCCCC--CCCceEEeeccCCCc
Q 012358 104 RIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIV--LPDYYS--PEGMGLIVPKTKDGR 179 (465)
Q Consensus 104 ~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv--~~~~~~--~~~~~~~~~~~~dgr 179 (465)
++.+|++. +|+ +|+||.||+|+|+|+..+.. ++. ++.|.+++... ++.... ....++++. . +.
T Consensus 196 ~v~gV~t~---~G~--~i~Ad~VV~AtG~~s~~l~~-l~~----~~~p~~~~~~~~~l~~~~~~~~~~~p~~~~--~-~~ 262 (438)
T 3dje_A 196 DVKGAVTA---DGK--IWRAERTFLCAGASAGQFLD-FKN----QLRPTAWTLVHIALKPEERALYKNIPVIFN--I-ER 262 (438)
T ss_dssp EEEEEEET---TTE--EEECSEEEECCGGGGGGTSC-CTT----CCEEEEEEEEEEECCGGGHHHHTTCCEEEE--T-TT
T ss_pred eEEEEEEC---CCC--EEECCEEEECCCCChhhhcC-ccc----ceeeEEEEEEEEEcChHHhhhhcCCCEEEE--C-CC
Confidence 77788774 353 69999999999999999876 322 35565433222 222110 012334432 1 24
Q ss_pred EEEEEec-CC-eEEEcccCCCC------------CCCC-CCCCCHHHHHHHHHHHhhhccccCCcCCeeEeeeeeeeccc
Q 012358 180 VVFMLPW-LG-RTVAGTTDSDT------------VITL-LPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAM 244 (465)
Q Consensus 180 ~~~~~P~-~g-~~liG~td~~~------------~~~~-~~~~~~~~i~~ll~~~~~~~~p~L~~~~i~~~waG~RP~~~ 244 (465)
.+|+.|. .+ .+++|...... ..|. ....+.+..+.+.+.+.++| |.|...++.+.|+|+||.++
T Consensus 263 ~~~~~p~~~~~~l~i~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~~~~g~~~~t~ 341 (438)
T 3dje_A 263 GFFFEPDEERGEIKICDEHPGYTNMVQSADGTMMSIPFEKTQIPKEAETRVRALLKETM-PQLADRPFSFARICWCADTA 341 (438)
T ss_dssp EEECSCCTTTCEEEEEECCSCEECEEECTTCCEEECCCCCSSCBHHHHHHHHHHHHHHC-GGGTTCCCSEEEEEEEEECT
T ss_pred ceecCCCCCCCeEEEEeCCCCccCCccCCCcccccCCcccccCCHHHHHHHHHHHHHhC-cccccCCcceeeEEEeCcCC
Confidence 4666777 33 35564211000 0111 22456778899999999999 89998999999999999998
Q ss_pred CCCCCCCCCcccceeeeec--CCCeEEEeCC---chhchHHHHHHHHHHHHH
Q 012358 245 DPSAKNTESISRDHVVCED--FPGLVTITGG---KWTTYRSMAEDAVNAAIK 291 (465)
Q Consensus 245 d~~~~~~~~~~r~~~i~~~--~~gli~v~Gg---k~Tt~r~~Ae~v~d~~~~ 291 (465)
|+ .+.|-.. .+|++..+|. .++.++.+|+.+++.+..
T Consensus 342 D~----------~piig~~p~~~~l~~a~G~~g~G~~~ap~~g~~la~~i~g 383 (438)
T 3dje_A 342 NR----------EFLIDRHPQYHSLVLGCGASGRGFKYLPSIGNLIVDAMEG 383 (438)
T ss_dssp TS----------CCEEEECSSCTTEEEEECCTTCCGGGTTTHHHHHHHHHHT
T ss_pred CC----------CeEEeecCCCCCEEEEECCCCcchhhhHHHHHHHHHHHhC
Confidence 85 2334332 2577777774 388999999999998864
No 17
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=99.70 E-value=4.7e-16 Score=169.37 Aligned_cols=232 Identities=15% Similarity=0.117 Sum_probs=165.7
Q ss_pred ceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEE
Q 012358 32 SRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARI 110 (465)
Q Consensus 32 ~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~ 110 (465)
.++++++++.+++| +. ...++++++ +++++|.+++.+|++.+.+.|++|+++++|++|..+++ + +.|.+
T Consensus 380 ~~~l~~~~~~~~~~-l~------~~~gg~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~--~-v~V~t 449 (689)
T 3pvc_A 380 AEAMSREQLSELAG-LD------CAHDGIHYPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDS--Q-WQLTF 449 (689)
T ss_dssp CEEECHHHHHHHHS-SC------CSSCEEEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSS--S-EEEEE
T ss_pred hhccCHHHHHHhcC-CC------cccceEEecCCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCC--e-EEEEe
Confidence 45899999999999 53 345677776 68899999999999999999999999999999998764 3 45655
Q ss_pred EECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccCCCcEEEEEecC---
Q 012358 111 RNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL--- 187 (465)
Q Consensus 111 ~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dgr~~~~~P~~--- 187 (465)
.+ |. .+|.|+.||+|+|.|+..+..+.+. ++.|.||+++.++..........++. .+ .|++|+.
T Consensus 450 ~~---G~-~~i~Ad~VVlAtG~~s~~l~~~~~l----pl~p~rGq~~~~~~~~~~~~l~~v~~--~~---~Yl~P~~~~~ 516 (689)
T 3pvc_A 450 GQ---SQ-AAKHHATVILATGHRLPEWEQTHHL----PLSAVRGQVSHIPTTPVLSQLQQVLC--YD---GYLTPVNPAN 516 (689)
T ss_dssp C----CC-CCEEESEEEECCGGGTTCSTTTTTS----CCEEEEEEEEEEECCTTGGGCCSEEE--SS---SEECCCBTTT
T ss_pred CC---Cc-EEEECCEEEECCCcchhccccccCC----ccccccCcEEEECCCCccccCCeeEe--CC---ceEccccCCC
Confidence 32 32 1489999999999999988877643 47899999999864321101111221 12 4788986
Q ss_pred CeEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCC-----cCCeeEeeeeeeecccCCCCCCCCCc--------
Q 012358 188 GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVR-----RTDVLSAWSGIRPLAMDPSAKNTESI-------- 254 (465)
Q Consensus 188 g~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~-----~~~i~~~waG~RP~~~d~~~~~~~~~-------- 254 (465)
|.+++|.+.... ..+..++.++.+.+++.+.++| |.+. +..+...|+|+||.++|..+ -.+..
T Consensus 517 g~~~iGat~~~~--~~d~~~~~~~~~~ll~~l~~~~-P~l~~~~~~~~~~~~~w~G~R~~t~D~lP-iiG~~p~~~~~~~ 592 (689)
T 3pvc_A 517 QHHCIGASYQRG--DIATDFRLTEQQENRERLLRCL-PQVSWPQQVDVSDNQARCGVRCAIRDHLP-MVGAVPDYAATLA 592 (689)
T ss_dssp TEEEEECCCEET--BCCCCCCHHHHHHHHHHHHHHC-TTCSGGGGCCCTTCCEEEEEEEECTTSCC-EEEEEECHHHHHH
T ss_pred CeEEEEEeccCC--CCCCCCCHHHHHHHHHHHHHhC-CCccccccccccccceeEEEeeecCCCCc-ccCcCCCHHHHHH
Confidence 678899876543 2345678889999999999999 7775 34568999999999998643 11111
Q ss_pred --------------ccceeeeec--CCCeEEEeC--C-chhchHHHHHHHHHHHH
Q 012358 255 --------------SRDHVVCED--FPGLVTITG--G-KWTTYRSMAEDAVNAAI 290 (465)
Q Consensus 255 --------------~r~~~i~~~--~~gli~v~G--g-k~Tt~r~~Ae~v~d~~~ 290 (465)
+|...+... .+|++..+| | .+|++..+|+.+++.+.
T Consensus 593 ~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~G~g~~Gl~~ap~~ae~lA~~i~ 647 (689)
T 3pvc_A 593 QYQDLSRRIQHGGESEVNDIAVAPVWPELFMVGGLGSRGLCSAPLVAEILAAQMF 647 (689)
T ss_dssp HSTTHHHHC--------CCCCCCCEEEEEEEEECCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhccccccccccccccccCCCCCChHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 111111111 146665555 3 38999999999999985
No 18
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=99.70 E-value=3.7e-16 Score=169.85 Aligned_cols=232 Identities=13% Similarity=0.095 Sum_probs=165.8
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEec-CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 109 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~-dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~ 109 (465)
..++++++++.+++| +. ...++++++ +++++|.+++.+|++.+.+.|++|+++++|++|..+++ + +.|+
T Consensus 384 ~~~~l~~~~~~~~~~-l~------~~~gg~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~--~-v~V~ 453 (676)
T 3ps9_A 384 LAVAVEANAVEQITG-VA------TNCSGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDD--C-WLLN 453 (676)
T ss_dssp TCEEECHHHHHHHHS-SC------CSSCEEEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETT--E-EEEE
T ss_pred HhhhCCHHHHHHhhC-CC------ccCCcEEecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCC--e-EEEE
Confidence 345999999999988 53 345677777 67899999999999999999999999999999998763 4 4555
Q ss_pred EEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccCCCcEEEEEecC--
Q 012358 110 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-- 187 (465)
Q Consensus 110 ~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dgr~~~~~P~~-- 187 (465)
+. +|. +|.|+.||+|+|.|+..+.++.+. ++.|.+|+++.++..........++. .+ .|++|+.
T Consensus 454 t~---~G~--~i~Ad~VVlAtG~~s~~l~~~~~l----pl~p~rGq~~~~~~~~~~~~l~~~l~--~~---~Yl~P~~~~ 519 (676)
T 3ps9_A 454 FA---GDQ--QATHSVVVLANGHQISRFSQTSTL----PVYSVAGQVSHIPTTPELAELKQVLC--YD---GYLTPQNPA 519 (676)
T ss_dssp ET---TSC--EEEESEEEECCGGGGGCSTTTTTC----SCEEEEEEEEEEECCTTGGGCCSEEE--SS---SEECCCBTT
T ss_pred EC---CCC--EEECCEEEECCCcchhccccccCC----cceeecCEEEEECCCcccccCCceeE--CC---eeeccccCC
Confidence 43 244 699999999999999988877643 47899999998864321101111221 12 4788985
Q ss_pred -CeEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhhccccCC-----cCCeeEeeeeeeecccCCCCCCCCCccc-----
Q 012358 188 -GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVR-----RTDVLSAWSGIRPLAMDPSAKNTESISR----- 256 (465)
Q Consensus 188 -g~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~~~p~L~-----~~~i~~~waG~RP~~~d~~~~~~~~~~r----- 256 (465)
|.+++|++.... ..+..++.++.+.+++.+.++| |.+. +..+...|+|+||.++|..+ -.+....
T Consensus 520 ~g~~~iG~t~~~~--~~d~~~~~~~~~~~l~~l~~~~-P~l~~~~~~d~~~~~~~~G~R~~t~D~lP-iiG~~p~~~~~~ 595 (676)
T 3ps9_A 520 NQHHCIGASYHRG--SEDTAYSEDDQQQNRQRLIDCF-PQAQWAKEVDVSDKEARCGVRCATRDHLP-MVGNVPDYEATL 595 (676)
T ss_dssp TTEEEEECCCEET--CCCCCCCHHHHHHHHHHHHHHS-TTCHHHHTCCCTTCCEEEEEEEECTTCCC-EEEEEECHHHHH
T ss_pred CCeEEEeeccCCC--CCCCCCCHHHHHHHHHHHHHhC-CCccccccCcccccceEEEEeCccCCcCC-ccCcCCChHHHH
Confidence 678899876543 2345678889999999999999 7765 23468999999999998643 1111100
Q ss_pred ---------ceeeeec--CCCeEEEeC--C-chhchHHHHHHHHHHHH
Q 012358 257 ---------DHVVCED--FPGLVTITG--G-KWTTYRSMAEDAVNAAI 290 (465)
Q Consensus 257 ---------~~~i~~~--~~gli~v~G--g-k~Tt~r~~Ae~v~d~~~ 290 (465)
...+... .+|++..+| | .+|+++.+|+.+++.+.
T Consensus 596 ~~y~~l~~~~~~~~~~~~~~~l~~a~G~g~~Gl~~Ap~~ae~lA~~i~ 643 (676)
T 3ps9_A 596 VEYASLAEQKDEAVSAPVFDDLFMFAALGSRGLCSAPLCAEILAAQMS 643 (676)
T ss_dssp HHTTTTTSCCTTCCSCCEEEEEEEEECCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhccccccccCCCCCCEeeeecccccHHHHHHHHHHHHHHHHc
Confidence 0000000 146665555 3 38999999999999985
No 19
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=99.67 E-value=1e-15 Score=153.64 Aligned_cols=203 Identities=18% Similarity=0.132 Sum_probs=142.4
Q ss_pred eEEEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 57 KGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 57 ~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
.+++++.++++||.+++.+|++.+.++|++|++ ++|+++.. . . + +|+.||||+|+|+..
T Consensus 129 ~~g~~~~~~~v~p~~~~~~l~~~~~~~G~~i~~-~~v~~l~~-----~------------~--~-~a~~VV~A~G~~s~~ 187 (363)
T 1c0p_A 129 AIGVTYDTLSVHAPKYCQYLARELQKLGATFER-RTVTSLEQ-----A------------F--D-GADLVVNATGLGAKS 187 (363)
T ss_dssp CEEEEEEEEECCHHHHHHHHHHHHHHTTCEEEE-CCCSBGGG-----T------------C--S-SCSEEEECCGGGGGT
T ss_pred eEEEEEecceecHHHHHHHHHHHHHHCCCEEEE-EEcccHhh-----c------------C--c-CCCEEEECCCcchhh
Confidence 345556678899999999999999999999998 88887732 1 0 1 689999999999998
Q ss_pred HhhhhcCCCCCceeecceeEEEeCCCCCCCCceEEeeccCCCcEEEEEecC-CeEEEcccCCCCCCCCCCCCCHHHHHHH
Q 012358 137 VRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQFI 215 (465)
Q Consensus 137 l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dgr~~~~~P~~-g~~liG~td~~~~~~~~~~~~~~~i~~l 215 (465)
+..+. + .++.|.||+++.++... +... ++...+++.+|++|+. |.+++|++..... .+..++.+.++.+
T Consensus 188 l~~~~--~--~~~~p~rg~~~~~~~~~-~~~~---~~~~~~~~~~y~~p~~~g~~~iG~t~~~~~--~~~~~~~~~~~~l 257 (363)
T 1c0p_A 188 IAGID--D--QAAEPIRGQTVLVKSPC-KRCT---MDSSDPASPAYIIPRPGGEVICGGTYGVGD--WDLSVNPETVQRI 257 (363)
T ss_dssp SBTTC--C--TTEEEEEEEEEEEECCC-CCCE---EECSCTTCCEEEEEETTTEEEEECCCEETC--CCCSCCHHHHHHH
T ss_pred ccCcc--c--CCccccCCeEEEEeCCc-ccce---EeeccCCCcEEEEEcCCCEEEEEeeeccCC--CCCCCCHHHHHHH
Confidence 87652 2 35899999999886542 2211 2212232337889985 6888998865432 3456788899999
Q ss_pred HHHHhhhccccC------CcCCeeEeeeeeeecccCCCCCCCCCc-c-------c--cee-ee-e--cC--CCeEEEeCC
Q 012358 216 LDAISDYLNVKV------RRTDVLSAWSGIRPLAMDPSAKNTESI-S-------R--DHV-VC-E--DF--PGLVTITGG 273 (465)
Q Consensus 216 l~~~~~~~~p~L------~~~~i~~~waG~RP~~~d~~~~~~~~~-~-------r--~~~-i~-~--~~--~gli~v~Gg 273 (465)
++.+.++| |.+ ...+|.+.|+|+||.++|+.+. .+.. . . |+. |. . .. +|++..+|-
T Consensus 258 ~~~~~~~~-P~l~~~~~~~~~~i~~~w~G~rp~t~d~~pi-ig~~~~~~~~~~~~~~d~~~~~g~~p~~~~~~~~~a~G~ 335 (363)
T 1c0p_A 258 LKHCLRLD-PTISSDGTIEGIEVLRHNVGLRPARRGGPRV-EAERIVLPLDRTKSPLSLGRGSARAAKEKEVTLVHAYGF 335 (363)
T ss_dssp HHHHHHHC-GGGSSSSSGGGCEEEEEEEEEEEEETTSCEE-EEEEEEESCCTTTCTTCSSCTTCCCSCCEEEEEEEEECC
T ss_pred HHHHHHhC-ccccCCcccccceEeeceEEECCCCCCCcee-EEEecccccccccCccccccccccccccccceEEEecCC
Confidence 99999999 888 4578999999999999886321 0000 0 0 000 00 0 01 356666662
Q ss_pred ---chhchHHHHHHHHHHHHHc
Q 012358 274 ---KWTTYRSMAEDAVNAAIKS 292 (465)
Q Consensus 274 ---k~Tt~r~~Ae~v~d~~~~~ 292 (465)
.+|.+..+|+.+++.+.+.
T Consensus 336 ~g~G~~~a~~~g~~~a~li~~~ 357 (363)
T 1c0p_A 336 SSAGYQQSWGAAEDVAQLVDEA 357 (363)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchheeccHHHHHHHHHHHH
Confidence 4888999999999888764
No 20
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=98.75 E-value=6e-07 Score=90.10 Aligned_cols=166 Identities=18% Similarity=0.195 Sum_probs=104.9
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCC-
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV- 145 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~- 145 (465)
++...+...|.+.+.+.|++++.+++|+++..++ + ++.+|.+.+ .++..+++||.||.|+|.|+ .+.+.+|...
T Consensus 99 ~~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~-~v~gv~~~~--~~~~~~~~a~~vV~A~G~~s-~~~~~~g~~~~ 173 (397)
T 3cgv_A 99 LERDKFDKHLAALAAKAGADVWVKSPALGVIKEN-G-KVAGAKIRH--NNEIVDVRAKMVIAADGFES-EFGRWAGLKSV 173 (397)
T ss_dssp ECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEET-T-EEEEEEEEE--TTEEEEEEEEEEEECCCTTC-HHHHHHTCCTT
T ss_pred EeHHHHHHHHHHHHHhCCCEEEECCEEEEEEEeC-C-EEEEEEEEE--CCeEEEEEcCEEEECCCcch-HhHHhcCCCcc
Confidence 5777899999999999999999999999998875 4 777888865 34455899999999999999 7778887654
Q ss_pred CC-ceeecceeEEEeCC-CCCCCCceEEeeccCCCcEEEEEecCC-eEEEcccCCCCCCCCCCCCCHHHHHHHHHHHhhh
Q 012358 146 QP-MICPSSGVHIVLPD-YYSPEGMGLIVPKTKDGRVVFMLPWLG-RTVAGTTDSDTVITLLPEPHEDEIQFILDAISDY 222 (465)
Q Consensus 146 ~~-~i~p~kG~~lv~~~-~~~~~~~~~~~~~~~dgr~~~~~P~~g-~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~~~ 222 (465)
+. +.....+....++. ...+....+++.....+..++++|..+ ...+|.+..... ..........++...+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~-----~~~~~~~~~~l~~~~~~ 248 (397)
T 3cgv_A 174 ILARNDIISALQYRMINVDVDPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGSSINW-----IHNRFELKNYLDRFIEN 248 (397)
T ss_dssp CCCGGGEEEEEEEEEESCCCCTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEEETTT-----CSCHHHHHHHHHHHHHT
T ss_pred CCChhheeEEEEEEeccCCCCCCcEEEEeCCcCCCceEEEEECCCCeEEEEEEecccc-----ccCCCCHHHHHHHHHHh
Confidence 21 11112233333322 222222222221112345678889864 555654432211 12233444444444444
Q ss_pred ccccCCcCCeeEeeeeeeecc
Q 012358 223 LNVKVRRTDVLSAWSGIRPLA 243 (465)
Q Consensus 223 ~~p~L~~~~i~~~waG~RP~~ 243 (465)
+ |.+...++...|.|..|+.
T Consensus 249 ~-~~~~~~~~~~~~~~~~p~~ 268 (397)
T 3cgv_A 249 H-PGLKKGQDIQLVTGGVSVS 268 (397)
T ss_dssp C-HHHHTSEEEEEEEEEEECC
T ss_pred C-cCCCCCeEEeeeeeeeecC
Confidence 4 5566778889999998874
No 21
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=98.34 E-value=2.9e-06 Score=85.95 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=59.7
Q ss_pred eEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCC
Q 012358 66 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 145 (465)
Q Consensus 66 ~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~ 145 (465)
.+++..+...|.+.|.+.|++++.+++|+++..+++ .+ .|.+.+ .+|+..+++||.||+|+|.|+ .+.+++|.+.
T Consensus 102 ~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~--~~-~v~v~~-~~g~~~~~~a~~vV~A~G~~s-~l~~~~g~~~ 176 (421)
T 3nix_A 102 QVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGT--DS-VTTIED-INGNKREIEARFIIDASGYGR-VIPRMFGLDK 176 (421)
T ss_dssp ECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETT--EE-EEEEEE-TTSCEEEEEEEEEEECCGGGC-HHHHHTTCEE
T ss_pred EECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC--EE-EEEEEc-CCCCEEEEEcCEEEECCCCch-hhHHhcCCCC
Confidence 468889999999999999999999999999988764 22 244443 256666799999999999998 6777777653
No 22
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=98.13 E-value=0.00013 Score=72.55 Aligned_cols=206 Identities=17% Similarity=0.177 Sum_probs=115.1
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 146 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~ 146 (465)
++-..+...|++.|.+.|++++..++|+++..+++ ++.++.... +++..+++|+.||-|.|.+|. +++.+|...+
T Consensus 99 i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~--~~~~v~~~~--~~~~~~~~a~~vIgAdG~~S~-vr~~~g~~~~ 173 (397)
T 3oz2_A 99 LERDKFDKHLAALAAKAGADVWVKSPALGVIKENG--KVAGAKIRH--NNEIVDVRAKMVIAADGFESE-FGRWAGLKSV 173 (397)
T ss_dssp ECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETT--EEEEEEEEE--TTEEEEEEEEEEEECCCTTCH-HHHHHTCGGG
T ss_pred EEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccc--eeeeeeecc--cccceEEEEeEEEeCCccccH-HHHHcCCCcc
Confidence 46667888899999999999999999999988763 777777654 566678999999999999974 5666665321
Q ss_pred CceeecceeEE-----EeCCCCCCCCceEEeeccCCCcEEEEEecC-CeEEEcccCCCCCCCCCCCCCHHHHHHHHHHHh
Q 012358 147 PMICPSSGVHI-----VLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQFILDAIS 220 (465)
Q Consensus 147 ~~i~p~kG~~l-----v~~~~~~~~~~~~~~~~~~dgr~~~~~P~~-g~~liG~td~~~~~~~~~~~~~~~i~~ll~~~~ 220 (465)
..+...... .......+....+++.....+...++.|.. +...+|...... ......+....++...
T Consensus 174 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~-----~~~~~~~~~~~l~~~~ 246 (397)
T 3oz2_A 174 --ILARNDIISALQYRMINVDVDPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGSSIN-----WIHNRFELKNYLDRFI 246 (397)
T ss_dssp --CCCGGGEEEEEEEEEESCCCCTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEEETT-----TSCSHHHHHHHHHHHH
T ss_pred --cccceeeeeeEEEEeeccccCcccceeeeeccCCCceEEEeecccceeEEEEeeccc-----hhhhhhhHHHHHHHHH
Confidence 111111111 122221221122222211223345667765 333344322110 1123345555555554
Q ss_pred hhccccCCcCCeeEeeeeeeecccCCCCCCCCCcccceeeeec-CCCeEEEeCCc-----hhchHHHHHHHHHHHH
Q 012358 221 DYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-FPGLVTITGGK-----WTTYRSMAEDAVNAAI 290 (465)
Q Consensus 221 ~~~~p~L~~~~i~~~waG~RP~~~d~~~~~~~~~~r~~~i~~~-~~gli~v~Ggk-----~Tt~r~~Ae~v~d~~~ 290 (465)
+.+ |.+........|.|..|..... .....+-.+... ..|.++.++|. +.+++..|+.+.+.+.
T Consensus 247 ~~~-~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l~ 316 (397)
T 3oz2_A 247 ENH-PGLKKGQDIQLVTGGVSVSKVK-----MPITMPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIE 316 (397)
T ss_dssp HTC-HHHHTSEEEEEEEEEEECCCCC-----SCCEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-ccccccceeeeeeccccccCcc-----cceeeeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 445 6676677778888887764321 111222233332 23555555553 4445556665555543
No 23
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=98.09 E-value=2.7e-05 Score=81.24 Aligned_cols=162 Identities=13% Similarity=0.094 Sum_probs=95.1
Q ss_pred eeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 65 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 65 g~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
..+++..+...|.+.|.+.|++++.+ +|+++..+++| .+++|++. +|+ +++||.||.|+|.|+..+.+++|..
T Consensus 168 ~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~-~~~~v~~~---~g~--~~~ad~vV~A~G~~S~~~~~~~g~~ 240 (511)
T 2weu_A 168 YHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERG-WISGVHTK---QHG--EISGDLFVDCTGFRGLLINQTLGGR 240 (511)
T ss_dssp EEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTS-CEEEEEES---SSC--EEECSEEEECCGGGCCCCCCCTCCC
T ss_pred EEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCC-CEEEEEEC---CCC--EEEcCEEEECCCcchHHHHHHhCCC
Confidence 45899999999999999999999999 99999885544 56777764 354 6999999999999997766666653
Q ss_pred CC--Cceeecc-eeEEEeCCCCC--CCCceEEeeccCCCcEEEEEecCCeEEEcccCCCCCCCCCCCCCHHHH-HHHHHH
Q 012358 145 VQ--PMICPSS-GVHIVLPDYYS--PEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEI-QFILDA 218 (465)
Q Consensus 145 ~~--~~i~p~k-G~~lv~~~~~~--~~~~~~~~~~~~dgr~~~~~P~~g~~liG~td~~~~~~~~~~~~~~~i-~~ll~~ 218 (465)
.. ....+.. +..+.++.... ......... .. +..++++|..+...+|..... . ..++++. +.+.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~~P~~~~~~~g~~~~~----~--~~~~~~~~~~l~~~ 312 (511)
T 2weu_A 241 FQSFSDVLPNNRAVALRVPRENDEDMRPYTTATA-MS-AGWMWTIPLFKRDGNGYVYSD----E--FISPEEAERELRST 312 (511)
T ss_dssp EEECTTTCCCCEEEEEEEECSSGGGCCSSEEEEE-ET-TEEEEEEECSSEEEEEEEECT----T--TSCHHHHHHHHHHH
T ss_pred CccccccCcccceEEEEeccCCCCCCCcceecee-cC-CCcEEEEECCCceEEEEEECC----C--CCCHHHHHHHHHHH
Confidence 10 0112222 22112221110 111111111 22 335778898765555543211 1 1233333 334333
Q ss_pred HhhhccccCCcCCeeEeeeeeeecc
Q 012358 219 ISDYLNVKVRRTDVLSAWSGIRPLA 243 (465)
Q Consensus 219 ~~~~~~p~L~~~~i~~~waG~RP~~ 243 (465)
. ... |.+....++..|.|.++..
T Consensus 313 ~-~~~-~~~~~~~~~~~~~~~~~~~ 335 (511)
T 2weu_A 313 V-APG-RDDLEANHIQMRIGRNERT 335 (511)
T ss_dssp H-CTT-CTTSCCEEEECCCEEESCS
T ss_pred h-Ccc-cccccceeEEeeccccccc
Confidence 3 222 4455566777888887643
No 24
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=98.07 E-value=0.00035 Score=71.55 Aligned_cols=75 Identities=23% Similarity=0.276 Sum_probs=61.1
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
++...+...|.+.+.+.|++++.+++|+++..++ + ++++|++.+..+|+..+++||.||.|+|.++. +.+.++..
T Consensus 97 i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~-~-~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~-vr~~l~~~ 171 (453)
T 3atr_A 97 LNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFED-G-YVKGAVLFNRRTNEELTVYSKVVVEATGYSRS-FRSKLPPE 171 (453)
T ss_dssp ECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEET-T-EEEEEEEEETTTTEEEEEECSEEEECCGGGCT-TGGGSCTT
T ss_pred EcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEEC-C-EEEEEEEEEcCCCceEEEEcCEEEECcCCchh-hHHhcCCC
Confidence 6777899999999999999999999999998866 3 78888886422465557999999999999986 66666654
No 25
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=97.91 E-value=3.8e-06 Score=94.52 Aligned_cols=62 Identities=11% Similarity=0.020 Sum_probs=58.1
Q ss_pred CccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHHcCCCH-HH
Q 012358 372 KRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDK-SR 436 (465)
Q Consensus 372 ~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~lgw~~-~~ 436 (465)
..||.|+.|+++||+.|+++ .+.++++ |+||||+|| ++|||.+|.+.+.++|++++|++. ++
T Consensus 482 ~~vc~c~~vt~~~i~~a~~~-g~~~~~~-~k~~t~~g~-g~cqg~~c~~~~~~~~~~~~~~~~~~~ 544 (965)
T 2gag_A 482 HFVDLQRDQTVADVLRATGA-GMKSVEH-IKRYTSIST-ANDQGKTSGVAAIGVIAAVLGIENPAA 544 (965)
T ss_dssp BEEETTTTEEHHHHHHHHHH-TCCSHHH-HHHHHCTTC-STTTTTTTHHHHHHHHHHHTTCSCGGG
T ss_pred eEEecCCCCcHHHHHHHHHh-CCCCHHH-HHHHhcCcc-cCcCCcccHHHHHHHHHHHHCcCcccc
Confidence 68999999999999999985 8999988 799999999 899999999999999999999987 54
No 26
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=97.75 E-value=0.00017 Score=76.69 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=60.6
Q ss_pred eEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 66 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 66 ~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
.++...+...|.+.+.+.|++++.+++|+++..++ + .+++|.+.+ +|+..+|+||.||.|+|.++. +.+.++..
T Consensus 124 ~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~-g-~~~~V~~~~--~G~~~~i~AdlVV~AdG~~S~-lr~~lg~~ 197 (591)
T 3i3l_A 124 QVKREEFDKLLLDEARSRGITVHEETPVTDVDLSD-P-DRVVLTVRR--GGESVTVESDFVIDAGGSGGP-ISRKLGVR 197 (591)
T ss_dssp ECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCS-T-TCEEEEEEE--TTEEEEEEESEEEECCGGGCH-HHHHHTCE
T ss_pred EEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-C-CEEEEEEec--CCceEEEEcCEEEECCCCcch-hHHHcCCC
Confidence 47888999999999999999999999999998764 3 567888875 465558999999999999875 55666654
No 27
>4e6k_G BFD, bacterioferritin-associated ferredoxin; protein complex, iron storage, iron binding, iron mobilizati ferritin, iron homeostasis; HET: HEM; 2.00A {Pseudomonas aeruginosa}
Probab=97.68 E-value=3e-05 Score=58.35 Aligned_cols=54 Identities=6% Similarity=-0.023 Sum_probs=47.7
Q ss_pred ccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHHcCC
Q 012358 373 RLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKW 432 (465)
Q Consensus 373 ~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~lgw 432 (465)
.||.|+.|++.+|+.||++ .+.|+++ |+++|+.|. + |. .|.+.|.++++++++-
T Consensus 2 iVC~C~~Vt~~~I~~AI~~-Ga~t~~~-v~~~t~aGt-~-CG--~C~~~i~~il~~~~~~ 55 (73)
T 4e6k_G 2 YVCLCQGVTDNQIRDAIYE-GCCSYRE-VREATGVGT-Q-CG--KCASLAKQVVRETLND 55 (73)
T ss_dssp EEETTTTEEHHHHHHHHHT-TCCSHHH-HHHHHCTTS-S-SC--TTHHHHHHHHHHHHHH
T ss_pred EEeecCCcCHHHHHHHHHh-cCCCHHH-HHHHhCCCC-C-CC--chHHHHHHHHHHHHhh
Confidence 5899999999999999995 9999988 699999998 4 63 7999999999987653
No 28
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=97.60 E-value=0.001 Score=67.10 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
...++.+|++.+.++|++|+++++|++|..++ + ++++|.+ +|+ ++.||.||+|+|+|+-
T Consensus 195 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~-~~~gv~~----~g~--~~~ad~VV~a~~~~~~ 253 (425)
T 3ka7_A 195 CKGIIDALETVISANGGKIHTGQEVSKILIEN-G-KAAGIIA----DDR--IHDADLVISNLGHAAT 253 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-T-EEEEEEE----TTE--EEECSEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEECCceeEEEEEC-C-EEEEEEE----CCE--EEECCEEEECCCHHHH
Confidence 35689999999999999999999999999876 4 7777765 254 6999999999999964
No 29
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=97.60 E-value=0.0017 Score=68.82 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=57.4
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---CCCcE-------EEEEccEEEEccCCChH-
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSGKE-------FDTYAKVVVNAAGPFCD- 135 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---~tg~~-------~~i~a~~VVnAaG~wa~- 135 (465)
++...+...|.+.|.+.|++|+.+++|+++..+++| ++++|.+.+. .+|+. .+++||.||.|.|.++.
T Consensus 141 v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g-~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~v 219 (584)
T 2gmh_A 141 VRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDG-SVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHL 219 (584)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTS-SEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHH
T ss_pred EeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCC-CEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchH
Confidence 355578899999999999999999999999887655 6888877520 12321 37999999999999985
Q ss_pred --HHhhhhcCC
Q 012358 136 --SVRKLADQN 144 (465)
Q Consensus 136 --~l~~~~g~~ 144 (465)
.+.+.+|..
T Consensus 220 r~~l~~~~gl~ 230 (584)
T 2gmh_A 220 AKQLYKKFDLR 230 (584)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHHHHhCCC
Confidence 333334543
No 30
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=97.55 E-value=3.8e-05 Score=79.89 Aligned_cols=64 Identities=11% Similarity=-0.073 Sum_probs=57.6
Q ss_pred CCCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhHHHHHHHHHHcCCCHHHH
Q 012358 370 LGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRR 437 (465)
Q Consensus 370 ~~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~~v~~~~a~~lgw~~~~~ 437 (465)
++..+|.| .++..+|..|++. .+.++++ |+||||+|| ++|||.+|.+.+.++|++++|.+.+++
T Consensus 410 ~~~~ic~~-~v~~~~i~~a~~~-g~~~~~~-~k~~t~~g~-g~cqg~~c~~~~~~~~~~~~~~~~~~~ 473 (493)
T 1y56_A 410 EDVQICGC-DVSLKKVDEVIRK-GITDLQI-IKRLTHLAM-GFCQGRYCLFNGAVVVSQRTGKKLSEI 473 (493)
T ss_dssp GGSBCSSS-SCBHHHHHHHHHT-TCCCHHH-HHHHSCTTC-STTTTTTTHHHHHHHHHHHHCCCGGGS
T ss_pred CCceeECc-cCcHHHHHHHHHh-CCCCHHH-HHHHhcCCC-ccCCCccCHHHHHHHHHHHHCcCHHHc
Confidence 45688999 6999999999985 9999988 799999999 899999999999999999999887653
No 31
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=97.55 E-value=0.00063 Score=71.59 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=59.3
Q ss_pred eeEchhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 65 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 65 g~vdp~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
..+++..+...|.+.+.+. |++++.+ +|+++..+++| .+++|.+. +|+ ++.||.||.|+|.|+..+.+++|.
T Consensus 189 ~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g-~~~~v~~~---~G~--~i~ad~vI~A~G~~S~~~~~~lg~ 261 (550)
T 2e4g_A 189 WHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANG-NIESVRTA---TGR--VFDADLFVDCSGFRGLLINKAMEE 261 (550)
T ss_dssp EEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTS-CEEEEEET---TSC--EEECSEEEECCGGGCCCCCCCTCC
T ss_pred eEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCC-CEEEEEEC---CCC--EEECCEEEECCCCchhhHHHHhCC
Confidence 3489999999999999998 9999999 99999876544 56777664 354 699999999999999776766665
Q ss_pred C
Q 012358 144 N 144 (465)
Q Consensus 144 ~ 144 (465)
.
T Consensus 262 ~ 262 (550)
T 2e4g_A 262 P 262 (550)
T ss_dssp C
T ss_pred C
Confidence 3
No 32
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=97.53 E-value=0.00078 Score=70.22 Aligned_cols=73 Identities=26% Similarity=0.393 Sum_probs=59.8
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
++...+...|.+.+.+.|++|+.+++|+++..++ + ++.+|.+.+. +|+..+++||.||.|+|.|+. +++.+|.
T Consensus 108 v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~-~-~v~gv~~~~~-dG~~~~i~ad~VI~AdG~~S~-vr~~lg~ 180 (512)
T 3e1t_A 108 VERARFDDMLLRNSERKGVDVRERHEVIDVLFEG-E-RAVGVRYRNT-EGVELMAHARFIVDASGNRTR-VSQAVGE 180 (512)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEET-T-EEEEEEEECS-SSCEEEEEEEEEEECCCTTCS-SGGGTCC
T ss_pred ecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEEC-C-EEEEEEEEeC-CCCEEEEEcCEEEECCCcchH-HHHHcCC
Confidence 6778899999999999999999999999999876 4 7888888752 465568999999999999984 4444454
No 33
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=97.51 E-value=0.0058 Score=63.41 Aligned_cols=73 Identities=22% Similarity=0.192 Sum_probs=58.2
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 145 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~ 145 (465)
++...+...|.+.+.+.|++|+.+++|+++..+++ .+ .|++.+. +| +.+++|+.||.|.|.||. +++.+|++.
T Consensus 104 i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v-~v~~~~~-~g-~~~~~a~~vVgADG~~S~-VR~~lg~~~ 176 (499)
T 2qa2_A 104 VPQSTTESVLEEWALGRGAELLRGHTVRALTDEGD--HV-VVEVEGP-DG-PRSLTTRYVVGCDGGRST-VRKAAGFDF 176 (499)
T ss_dssp EEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSS--CE-EEEEECS-SC-EEEEEEEEEEECCCTTCH-HHHHTTCCC
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC--EE-EEEEEcC-CC-cEEEEeCEEEEccCcccH-HHHHcCCCC
Confidence 56778888999999999999999999999988764 33 3666542 34 357999999999999985 778887653
No 34
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=97.45 E-value=0.0012 Score=69.16 Aligned_cols=75 Identities=21% Similarity=0.233 Sum_probs=59.1
Q ss_pred eEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCe--EEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 66 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNR--IIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 66 ~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~--v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
.++...+...|.+.+.+.|++|+.+++|+++..++++ + .+.|++.+. +...+|+|+.||.|.|.|| .+++++|+
T Consensus 116 ~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~-~~~~v~v~~~~~--~~~~~i~a~~vV~AdG~~S-~vR~~lgi 191 (535)
T 3ihg_A 116 MLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDD-AGAGVTARLAGP--DGEYDLRAGYLVGADGNRS-LVRESLGI 191 (535)
T ss_dssp CCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGG-GCSEEEEEEEET--TEEEEEEEEEEEECCCTTC-HHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCC-ccccEEEEEEcC--CCeEEEEeCEEEECCCCcc-hHHHHcCC
Confidence 3577789999999999999999999999999886541 2 244555542 1235899999999999998 88888887
Q ss_pred C
Q 012358 144 N 144 (465)
Q Consensus 144 ~ 144 (465)
.
T Consensus 192 ~ 192 (535)
T 3ihg_A 192 G 192 (535)
T ss_dssp C
T ss_pred C
Confidence 5
No 35
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=97.42 E-value=0.00043 Score=72.19 Aligned_cols=66 Identities=29% Similarity=0.340 Sum_probs=55.8
Q ss_pred Echh-HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEcc-EEEEccCCChH
Q 012358 67 MNDS-RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFCD 135 (465)
Q Consensus 67 vdp~-rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~-~VVnAaG~wa~ 135 (465)
.... .++..|.+.+.++|++|+++++|++|..+++| +|+||.+.+ +|+..+|+|+ .||+|+|.|+.
T Consensus 198 ~~g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g-~v~GV~~~~--~g~~~~i~A~k~VVlAtGG~~~ 265 (510)
T 4at0_A 198 KGGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTG-RVVGIVAKQ--YGKEVAVRARRGVVLATGSFAY 265 (510)
T ss_dssp BCTTHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTC-CEEEEEEEE--TTEEEEEEEEEEEEECCCCCTT
T ss_pred CCCHHHHHHHHHHHHHHcCCEEEecCEeEEEEECCCC-cEEEEEEEE--CCcEEEEEeCCeEEEeCCChhh
Confidence 3444 78999999999999999999999999987445 899999876 4666689995 99999999974
No 36
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=97.41 E-value=0.0083 Score=62.24 Aligned_cols=73 Identities=27% Similarity=0.283 Sum_probs=57.8
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 145 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~ 145 (465)
++...+...|.+.+.+.|++|+.+++|+++..+++ .+. |++.+. +| ..+++|+.||.|.|.+|. +++.+|++.
T Consensus 103 i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~-v~~~~~-~g-~~~~~a~~vVgADG~~S~-VR~~lg~~~ 175 (500)
T 2qa1_A 103 VPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGA--GVT-VEVRGP-EG-KHTLRAAYLVGCDGGRSS-VRKAAGFDF 175 (500)
T ss_dssp EEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETT--EEE-EEEEET-TE-EEEEEESEEEECCCTTCH-HHHHTTCCC
T ss_pred cCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCC--eEE-EEEEcC-CC-CEEEEeCEEEECCCcchH-HHHHcCCCc
Confidence 56667888888899999999999999999988764 443 666652 23 347999999999999985 778887653
No 37
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=97.40 E-value=0.0011 Score=70.11 Aligned_cols=74 Identities=28% Similarity=0.321 Sum_probs=58.9
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 146 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~ 146 (465)
++...+...|.+.+.+.|++|+.+++|+++..+++ . +.|++.+. +|+ .+++|+.||.|.|.|| .+++++|+..+
T Consensus 145 i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~--~-v~v~~~~~-~G~-~~~~a~~vV~ADG~~S-~vR~~lGi~~~ 218 (570)
T 3fmw_A 145 VPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAE--A-VEVTVAGP-SGP-YPVRARYGVGCDGGRS-TVRRLAADRFP 218 (570)
T ss_dssp CCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSS--C-EEEEEEET-TEE-EEEEESEEEECSCSSC-HHHHHTTCCCC
T ss_pred eCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--e-EEEEEEeC-CCc-EEEEeCEEEEcCCCCc-hHHHHcCCCCc
Confidence 67788999999999889999999999999987764 3 33655431 342 4799999999999999 88888887643
No 38
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=97.38 E-value=0.00065 Score=71.81 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=59.8
Q ss_pred cCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 63 YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 63 ~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.++...+..+...|.+.+.+.|++|+.+++|++|..+++| +|+||.+.+. +|+..+|+|+.||+|+|.|+.
T Consensus 248 ~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g-~v~Gv~~~~~-~g~~~~i~a~~VVlAtGg~~~ 318 (571)
T 1y0p_A 248 TGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG-TVKGILVKGM-YKGYYWVKADAVILATGGFAK 318 (571)
T ss_dssp TTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS-CEEEEEEEET-TTEEEEEECSEEEECCCCCTT
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCC-eEEEEEEEeC-CCcEEEEECCeEEEeCCCccc
Confidence 3556678889999999999999999999999999886534 8999988752 466567999999999999975
No 39
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=97.31 E-value=0.00078 Score=71.16 Aligned_cols=70 Identities=20% Similarity=0.248 Sum_probs=59.4
Q ss_pred CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 64 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 64 dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
++.+++..++..|.+.+.+.|++|+++++|++|..+++| +|+||.+.+. +|+..+|+|+.||+|+|.|+.
T Consensus 244 ~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g-~v~Gv~~~~~-~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 244 GGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH-SVVGAVVHGK-HTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp SSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS-BEEEEEEEET-TTEEEEEEEEEEEECCCCCTT
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCC-cEEEEEEEeC-CCcEEEEEcCEEEEecCCccc
Confidence 555778889999999999999999999999999886524 8999988752 465567999999999999985
No 40
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=97.29 E-value=0.003 Score=66.18 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=59.3
Q ss_pred CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 64 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 64 dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
...+++..+...|.+.+.+.|++++.+ +|+++..+++| .+++|.+. +|+ +++||.||.|+|.|+..+.+++|.
T Consensus 159 ~~~i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g-~~~~v~~~---~g~--~i~ad~vV~A~G~~s~~~~~~lg~ 231 (538)
T 2aqj_A 159 AWHFDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRG-YISNLLTK---EGR--TLEADLFIDCSGMRGLLINQALKE 231 (538)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTS-CEEEEEET---TSC--EECCSEEEECCGGGCCCCCCCTCC
T ss_pred cEEEeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCC-cEEEEEEC---CCc--EEEeCEEEECCCCchhhHHHHhCC
Confidence 456899999999999999999999988 89999886544 56667654 354 699999999999998766666665
No 41
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=97.23 E-value=0.0011 Score=70.42 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=57.7
Q ss_pred chhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 68 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
.+..++..|.+.+.+.|++|+++++|+++..+++| +++||.+.+..+|+...|.|+.||+|+|.|+...
T Consensus 141 ~g~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g-~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~y 209 (588)
T 2wdq_A 141 TGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDG-AVVGCTALCIETGEVVYFKARATVLATGGAGRIY 209 (588)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTS-CEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGS
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCC-EEEEEEEEEcCCCeEEEEEcCEEEECCCCCcccc
Confidence 35678899999999999999999999999985334 7999998764467666799999999999998654
No 42
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=97.22 E-value=0.00092 Score=71.89 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
+..++..|.+.+.+.|++|+++++|+++..++ | ++.||.+.+..+|+...|.|+.||+|+|.|+..
T Consensus 157 G~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~-g-~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~ 222 (660)
T 2bs2_A 157 GHTMLFAVANECLKLGVSIQDRKEAIALIHQD-G-KCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRI 222 (660)
T ss_dssp HHHHHHHHHHHHHHHTCEEECSEEEEEEEEET-T-EEEEEEEEETTTCCEEEEECSEEEECCCCCGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEECcEEEEEEecC-C-EEEEEEEEECCCCcEEEEEcCEEEEccCcchhh
Confidence 56789999999999999999999999998765 4 899998876456766679999999999999854
No 43
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=97.21 E-value=0.00074 Score=69.12 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh----------HHHh
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC----------DSVR 138 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa----------~~l~ 138 (465)
+..++..|.+.+.+.|++|+.+++|+++..++ + ++++|++. +|+ +|+|+.||+|+|.|+ -.++
T Consensus 133 ~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~-~-~v~~V~~~---~G~--~i~Ad~VVlAtGg~s~~~~g~tG~g~~la 205 (447)
T 2i0z_A 133 AQSVVDALLTRLKDLGVKIRTNTPVETIEYEN-G-QTKAVILQ---TGE--VLETNHVVIAVGGKSVPQTGSTGDGYAWA 205 (447)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-T-EEEEEEET---TCC--EEECSCEEECCCCSSSGGGSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEeCcEEEEEEecC-C-cEEEEEEC---CCC--EEECCEEEECCCCCcCCCCCCCcHHHHHH
Confidence 46788899999999999999999999998765 4 77888764 354 599999999999999 5777
Q ss_pred hhhcCC
Q 012358 139 KLADQN 144 (465)
Q Consensus 139 ~~~g~~ 144 (465)
+.+|..
T Consensus 206 ~~~G~~ 211 (447)
T 2i0z_A 206 EKAGHT 211 (447)
T ss_dssp HHTTCC
T ss_pred HHCCCC
Confidence 888875
No 44
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=97.19 E-value=0.0014 Score=69.37 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=57.2
Q ss_pred CeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 64 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 64 dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
++...+..++..|.+.+.+.|++|+++++|++|..+++| +|+||.+.+ .+|+..+|.|+.||+|+|.|+.
T Consensus 249 ~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g-~v~GV~~~~-~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 249 GGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASG-KVTGVLVKG-EYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--C-CEEEEEEEE-TTTEEEEEECSEEEECCCCCTT
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCC-eEEEEEEEe-CCCcEEEEEcCEEEEeCCCCcc
Confidence 444567789999999999999999999999999876524 899998875 2466567999999999999974
No 45
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=97.14 E-value=0.0015 Score=62.58 Aligned_cols=85 Identities=13% Similarity=0.026 Sum_probs=60.9
Q ss_pred chhHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---------CCCcEEEEEccEEEEccC------
Q 012358 68 NDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNN---------LSGKEFDTYAKVVVNAAG------ 131 (465)
Q Consensus 68 dp~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---------~tg~~~~i~a~~VVnAaG------ 131 (465)
+...+...+.+.+.+ .|++++++++|+++..++ + ++.+|.+.+. .+++..++.||.||+|+|
T Consensus 117 ~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~-~-~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~ 194 (284)
T 1rp0_A 117 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-N-RVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFG 194 (284)
T ss_dssp CHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEET-T-EEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecC-C-eEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHH
Confidence 456677888888876 699999999999998765 3 7888887531 113335799999999999
Q ss_pred CChHHHhhhhcCCCCCceeecceeE
Q 012358 132 PFCDSVRKLADQNVQPMICPSSGVH 156 (465)
Q Consensus 132 ~wa~~l~~~~g~~~~~~i~p~kG~~ 156 (465)
.|+..+....+.. ..+.|.+|++
T Consensus 195 ~~~~~~~~~~g~~--~~v~~~~g~~ 217 (284)
T 1rp0_A 195 ATGVKRLKSIGMI--DHVPGMKALD 217 (284)
T ss_dssp THHHHHHHHTTSS--SCCCCCEEEC
T ss_pred HHHHHHhhhccCC--CCcCCcCCch
Confidence 5666665444433 2466777744
No 46
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=97.07 E-value=0.00073 Score=69.63 Aligned_cols=66 Identities=15% Similarity=0.295 Sum_probs=52.6
Q ss_pred EEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 60 VVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 60 ~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+.|+.|. ...++.+|++.+.++|++|+.+++|++|..+.+| ++++|++. +|+ ++.||.||+|+|.|
T Consensus 248 ~~yp~gG--~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g-~v~gV~~~---~G~--~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 248 FIYPLYG--LGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDN-KVCGIKSS---DGE--IAYCDKVICDPSYV 313 (475)
T ss_dssp EEEETTC--TTHHHHHHHHHHHHC--CEESSCCEEEEEECTTS-CEEEEEET---TSC--EEEEEEEEECGGGC
T ss_pred eEEECCC--HHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCC-eEEEEEEC---CCc--EEECCEEEECCCcc
Confidence 4566544 3689999999999999999999999999983334 78999875 355 69999999999998
No 47
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=97.04 E-value=0.00078 Score=69.63 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..++.+|++.+.++|++|+.+++|++|..++ | ++++|++.| |+ ++.||.||.++++|.
T Consensus 221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~-~-~~~gV~~~~---g~--~~~ad~VV~~a~~~~ 278 (501)
T 4dgk_A 221 GALVQGMIKLFQDLGGEVVLNARVSHMETTG-N-KIEAVHLED---GR--RFLTQAVASNADVVH 278 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEET-T-EEEEEEETT---SC--EEECSCEEECCC---
T ss_pred cchHHHHHHHHHHhCCceeeecceeEEEeeC-C-eEEEEEecC---Cc--EEEcCEEEECCCHHH
Confidence 4688999999999999999999999999887 4 899998864 65 799999999999984
No 48
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=96.93 E-value=0.0012 Score=67.55 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEc--CCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKD--EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~--~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
..++.+|++.+.++|++|+.+++|++|..+ + | ++++|.+ +|+ ++.||.||+|+|+|++.+
T Consensus 242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~-~-~~~~V~~----~g~--~~~ad~VV~a~~~~~~~l 303 (453)
T 2bcg_G 242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDT-G-KFEGVKT----KLG--TFKAPLVIADPTYFPEKC 303 (453)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEEETTT-T-EEEEEEE----TTE--EEECSCEEECGGGCGGGE
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCC-C-eEEEEEE----CCe--EEECCEEEECCCccchhh
Confidence 579999999999999999999999999886 5 4 7777765 254 699999999999998765
No 49
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=96.93 E-value=0.0025 Score=68.05 Aligned_cols=66 Identities=15% Similarity=0.028 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
+..++..|.+.+.+.|++|+++++|+++..++ | ++.||.+.+..+|+...|.|+.||+|+|.|+..
T Consensus 154 G~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~ 219 (621)
T 2h88_A 154 GHSLLHTLYGRSLRYDTSYFVEYFALDLLMEN-G-ECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT 219 (621)
T ss_dssp HHHHHHHHHHHHTTSCCEEEETEEEEEEEEET-T-EEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEEceEEEEEEEEC-C-EEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence 45788999999999999999999999998865 4 899999876446776689999999999999864
No 50
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=96.81 E-value=0.002 Score=67.72 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=56.5
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH---hhhhcC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV---RKLADQ 143 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l---~~~~g~ 143 (465)
.+...++..+.+.+.+.|++|+++++|+++..++ + ++++|.+. +|+ ++.|+.||+|+|.|+... +...|.
T Consensus 217 ~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~-~-~v~gV~l~---~G~--~i~Ad~VVlA~G~~s~~~~~~l~~~Gi 289 (549)
T 3nlc_A 217 FKLVTMIEKMRATIIELGGEIRFSTRVDDLHMED-G-QITGVTLS---NGE--EIKSRHVVLAVGHSARDTFEMLHERGV 289 (549)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESS-S-BEEEEEET---TSC--EEECSCEEECCCTTCHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeC-C-EEEEEEEC---CCC--EEECCEEEECCCCChhhHHHHHHHcCC
Confidence 3456788889999999999999999999998876 3 78888875 354 699999999999999743 344454
Q ss_pred C
Q 012358 144 N 144 (465)
Q Consensus 144 ~ 144 (465)
.
T Consensus 290 ~ 290 (549)
T 3nlc_A 290 Y 290 (549)
T ss_dssp C
T ss_pred C
Confidence 4
No 51
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=96.78 E-value=0.0012 Score=67.22 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=54.6
Q ss_pred EEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 60 VVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 60 ~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
++++.+. ...++.+|++.+.++|++|+.+++|++|..++ + ++++|.+ +|+ ++.||.||+|+|+|+..+
T Consensus 226 ~~~p~gG--~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~-~v~~v~~----~g~--~~~ad~VV~a~~~~~~~~ 293 (433)
T 1d5t_A 226 YLYPLYG--LGELPQGFARLSAIYGGTYMLNKPVDDIIMEN-G-KVVGVKS----EGE--VARCKQLICDPSYVPDRV 293 (433)
T ss_dssp EEEETTC--TTHHHHHHHHHHHHHTCCCBCSCCCCEEEEET-T-EEEEEEE----TTE--EEECSEEEECGGGCGGGE
T ss_pred EEEeCcC--HHHHHHHHHHHHHHcCCEEECCCEEEEEEEeC-C-EEEEEEE----CCe--EEECCEEEECCCCCcccc
Confidence 4444333 46899999999999999999999999998876 4 7777663 354 699999999999998755
No 52
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=96.68 E-value=0.0031 Score=63.05 Aligned_cols=70 Identities=21% Similarity=0.173 Sum_probs=56.7
Q ss_pred EchhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEE-EEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 67 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRII-GARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~-gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
++...+...|.+.+.+. |++|+.+++|+++..+++ +++ .|++. +|+ +++||.||.|+|.|+. +++.+|.+
T Consensus 104 ~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~--~v~g~v~~~---~g~--~~~ad~vV~AdG~~s~-vr~~lg~~ 175 (399)
T 2x3n_A 104 MPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDER--HAIDQVRLN---DGR--VLRPRVVVGADGIASY-VRRRLLDI 175 (399)
T ss_dssp CCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTT--SCEEEEEET---TSC--EEEEEEEEECCCTTCH-HHHHTSCC
T ss_pred ccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCC--ceEEEEEEC---CCC--EEECCEEEECCCCChH-HHHHhCCC
Confidence 67778999999999888 999999999999988764 443 45553 354 6999999999999987 77777765
No 53
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=96.64 E-value=0.0048 Score=65.64 Aligned_cols=67 Identities=18% Similarity=0.129 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 69 DSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 69 p~rl~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
+..++..|.+.+.+.| ++|+.+++|+++..++ + +++||.+.+..+|+...|.|+.||+|+|.|+...
T Consensus 133 g~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~-g-~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~ 200 (602)
T 1kf6_A 133 GFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDD-G-HVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 200 (602)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEETEEEEEEEEET-T-EEEEEEEEETTTTEEEEEECSCEEECCCCCGGGS
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeC-C-EEEEEEEEEcCCCcEEEEEcCeEEECCCCCcccc
Confidence 4578889999998899 9999999999998865 4 8899987764467656799999999999998654
No 54
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=96.58 E-value=0.003 Score=64.06 Aligned_cols=68 Identities=12% Similarity=0.042 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh----------HHH
Q 012358 68 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC----------DSV 137 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa----------~~l 137 (465)
++..+...+.+.+.+.|++|+.+++|+++..+++ . +.|.+. +| ++.||.||+|+|.|+ -.+
T Consensus 130 ~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~--~-~~V~~~---~g---~i~ad~VIlAtG~~S~p~~gs~g~g~~l 200 (417)
T 3v76_A 130 SAKDIIRMLMAEMKEAGVQLRLETSIGEVERTAS--G-FRVTTS---AG---TVDAASLVVASGGKSIPKMGATGLAYRI 200 (417)
T ss_dssp CHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT--E-EEEEET---TE---EEEESEEEECCCCSSCGGGTCCCHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC--E-EEEEEC---Cc---EEEeeEEEECCCCccCCCCCCCcHHHHH
Confidence 4557888899999999999999999999988653 2 445442 23 799999999999998 456
Q ss_pred hhhhcCC
Q 012358 138 RKLADQN 144 (465)
Q Consensus 138 ~~~~g~~ 144 (465)
++.+|..
T Consensus 201 a~~~G~~ 207 (417)
T 3v76_A 201 AEQFGLP 207 (417)
T ss_dssp HHHTTCC
T ss_pred HHHCCCC
Confidence 6666764
No 55
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=96.53 E-value=0.0019 Score=67.83 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=55.3
Q ss_pred HHHHHHHHHH-hCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEcc-EEEEccCC-ChHHHhhhhcC
Q 012358 72 LNVGLALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGP-FCDSVRKLADQ 143 (465)
Q Consensus 72 l~~~l~~~A~-~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~-~VVnAaG~-wa~~l~~~~g~ 143 (465)
...+++..+. +.|++|+.++.|+.|..++++ +++||.+.+..+|+..+|+|+ .||+|||. |+.+|+.+.|+
T Consensus 210 ~~~a~l~~a~~~~~~~i~~~~~V~~i~~~~~~-~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~SGi 283 (546)
T 2jbv_A 210 SSVSYIHPIVEQENFTLLTGLRARQLVFDADR-RCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGI 283 (546)
T ss_dssp HHHHHTGGGTTCTTEEEECSCEEEEEEECTTS-BEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHhcCCCcEEEeCCEEEEEEECCCC-eEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhhhcCC
Confidence 3455666664 579999999999999987534 899999876333777789998 99999999 58888776553
No 56
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=96.52 E-value=0.0058 Score=65.53 Aligned_cols=70 Identities=21% Similarity=0.182 Sum_probs=56.5
Q ss_pred EchhHHHHHHHHHHHhC-CC-EEEcceeEEEEEEcCC--CCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 67 MNDSRLNVGLALTAALA-GA-AVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~-Ga-~i~~~t~V~~i~~~~~--g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
+++..+...+.+.+.+. |+ +|++++.|+++..+++ | +|+||.+.+..+|+...|.|+.||+|+|.|+...
T Consensus 148 ~~g~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g-~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~y 221 (643)
T 1jnr_A 148 IHGESYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPN-AVAGAVGFSVREPKFYVFKAKAVILATGGATLLF 221 (643)
T ss_dssp EEETTHHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTT-BEEEEEEEESSSSCEEEEECSEEEECCCCBCSSS
T ss_pred CCcHHHHHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccc-eeEEEEEEEecCCcEEEEEcCEEEECCCcccccc
Confidence 45667788888888887 99 9999999999988653 3 7899987654467656799999999999998643
No 57
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=96.48 E-value=0.0038 Score=65.14 Aligned_cols=73 Identities=10% Similarity=0.137 Sum_probs=57.8
Q ss_pred eeEchhHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 65 GQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 65 g~vdp~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
..+++..+...|.+.+.+ .|++++.+ +|+++..+++| .+++|.+. +|. +++||.||.|+|.|+..+.+++|.
T Consensus 170 ~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g-~~~~v~~~---~g~--~i~ad~vV~AdG~~S~~~~~~lg~ 242 (526)
T 2pyx_A 170 YHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHG-DIEKLITK---QNG--EISGQLFIDCTGAKSLLLGEHLQV 242 (526)
T ss_dssp EEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTS-CEEEEEES---SSC--EEECSEEEECSGGGCCCCCCCTCC
T ss_pred EEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCC-cEEEEEEC---CCC--EEEcCEEEECCCcchHHHHHHhCC
Confidence 457899999999999998 89999988 59999876544 45566653 344 599999999999998766666665
Q ss_pred C
Q 012358 144 N 144 (465)
Q Consensus 144 ~ 144 (465)
.
T Consensus 243 ~ 243 (526)
T 2pyx_A 243 P 243 (526)
T ss_dssp C
T ss_pred C
Confidence 3
No 58
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=96.43 E-value=0.019 Score=57.42 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=50.1
Q ss_pred eEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhh-cCC
Q 012358 66 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA-DQN 144 (465)
Q Consensus 66 ~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~-g~~ 144 (465)
.++...+...|.+.+.+ ++|+.+++|+++..+++ . +.|++. +|+ ++.||.||.|.|.|+.- ++.+ +..
T Consensus 123 ~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~--~-v~v~~~---~g~--~~~a~~vV~AdG~~S~v-r~~l~~~~ 191 (407)
T 3rp8_A 123 PVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDAD--G-VTVWFT---DGS--SASGDLLIAADGSHSAL-RPWVLGFT 191 (407)
T ss_dssp EEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETT--E-EEEEET---TSC--EEEESEEEECCCTTCSS-HHHHHSSC
T ss_pred EEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCC--c-EEEEEc---CCC--EEeeCEEEECCCcChHH-HHHhcCCC
Confidence 35677788888888766 89999999999998764 3 334443 354 79999999999999754 3444 654
No 59
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=96.41 E-value=0.053 Score=57.90 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=58.3
Q ss_pred EchhHHHHHHHHHHHhCCC--EEEcceeEEEEEEcCC--CCeEEEEEEEEC---CCCcEEEEEccEEEEccCCChHHHhh
Q 012358 67 MNDSRLNVGLALTAALAGA--AVLNHAEVISLIKDEA--SNRIIGARIRNN---LSGKEFDTYAKVVVNAAGPFCDSVRK 139 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga--~i~~~t~V~~i~~~~~--g~~v~gV~~~d~---~tg~~~~i~a~~VVnAaG~wa~~l~~ 139 (465)
++..++...|.+.+.+.|+ +|+.+++|+++..+++ + ..+.|++.+. .+|+..+++|+.||.|.|.||. +++
T Consensus 138 i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~-~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~-vR~ 215 (639)
T 2dkh_A 138 LNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAAD-YPVTVTLERCDAAHAGQIETVQARYVVGCDGARSN-VRR 215 (639)
T ss_dssp CCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSS-CCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCH-HHH
T ss_pred eCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCc-CCEEEEEEeccccCCCCeEEEEeCEEEECCCcchH-HHH
Confidence 4566888889999999998 9999999999988652 1 2345666541 1355558999999999999986 778
Q ss_pred hhcCC
Q 012358 140 LADQN 144 (465)
Q Consensus 140 ~~g~~ 144 (465)
++|..
T Consensus 216 ~lg~~ 220 (639)
T 2dkh_A 216 AIGRQ 220 (639)
T ss_dssp HTTCC
T ss_pred HhCCC
Confidence 87765
No 60
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=96.38 E-value=0.0053 Score=65.95 Aligned_cols=68 Identities=24% Similarity=0.198 Sum_probs=57.5
Q ss_pred EchhHHHHHHHHHHHhC--CCEEEcceeEEEEEEcCC--CCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 67 MNDSRLNVGLALTAALA--GAAVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~--Ga~i~~~t~V~~i~~~~~--g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+++..+...|.+.+.++ |++|++++.|+++..+++ | ++.||.+.+..+|+...|+|+.||+|||-++.
T Consensus 163 ~~G~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g-~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~ 234 (662)
T 3gyx_A 163 INGESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPN-RIAGAVGFNLRANEVHIFKANAMVVACGGAVN 234 (662)
T ss_dssp EEETSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTT-BEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccc-eEEEEEEEEcCCCcEEEEEeCEEEECCCcccc
Confidence 45677888899998887 999999999999988754 4 79999887655677678999999999999875
No 61
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=96.25 E-value=0.0034 Score=63.32 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+..++.+|++.+.++|++|+.+++|++|..+++ ++ | .. +|+ ++.||.||+|+|+|.
T Consensus 188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~--~v--V--~~--~g~--~~~ad~Vv~a~~~~~ 243 (421)
T 3nrn_A 188 CKAVIDELERIIMENKGKILTRKEVVEINIEEK--KV--Y--TR--DNE--EYSFDVAISNVGVRE 243 (421)
T ss_dssp HHHHHHHHHHHHHTTTCEEESSCCEEEEETTTT--EE--E--ET--TCC--EEECSEEEECSCHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECC--EE--E--Ee--CCc--EEEeCEEEECCCHHH
Confidence 567999999999999999999999999987653 44 4 21 354 699999999999985
No 62
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=96.18 E-value=0.0079 Score=63.07 Aligned_cols=69 Identities=23% Similarity=0.245 Sum_probs=50.9
Q ss_pred chhHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCCC-----CeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 68 NDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEAS-----NRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 68 dp~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g-----~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
.+..++..|.+.+.+ .|++|+++++|+++..+++| ++++||.+.+..+|+...|.|+.||+|+|.|+..
T Consensus 136 ~g~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 210 (540)
T 1chu_A 136 TGREVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKV 210 (540)
T ss_dssp ------CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGG
T ss_pred CHHHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 345677788888888 79999999999999883211 0688998876445766689999999999999854
No 63
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=96.15 E-value=0.0076 Score=62.59 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=52.6
Q ss_pred HHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEEEECCCC---cEEEEEccEEEEccCCC-hHHHhhhhc
Q 012358 74 VGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSG---KEFDTYAKVVVNAAGPF-CDSVRKLAD 142 (465)
Q Consensus 74 ~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg---~~~~i~a~~VVnAaG~w-a~~l~~~~g 142 (465)
.+++..|.++| ++|+.++.|+.|..+++|++++||++.+. +| +..+|+|+.||+|||+| +++++...|
T Consensus 225 ~~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~-~g~~~~~~~v~A~~VIlaaG~~~s~~lL~~Sg 297 (504)
T 1n4w_A 225 KTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDT-DGKLLATKEISCRYLFLGAGSLGSTELLVRAR 297 (504)
T ss_dssp TTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECT-TCCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCC-CCccceeEEEeeCEEEEccCCCCCHHHHHhcc
Confidence 45667777786 99999999999998743227899998742 35 45689999999999998 777766555
No 64
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=96.09 E-value=0.0086 Score=55.29 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 68 NDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
++..+...+.+.+.+. |++++ +++|+++..++ + ++++|.+. +|+ +++||.||.|+|.|+...
T Consensus 66 ~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~-~-~v~~v~~~---~g~--~i~a~~VV~A~G~~s~~~ 128 (232)
T 2cul_A 66 RVWAFHARAKYLLEGLRPLHLF-QATATGLLLEG-N-RVVGVRTW---EGP--PARGEKVVLAVGSFLGAR 128 (232)
T ss_dssp CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEET-T-EEEEEEET---TSC--CEECSEEEECCTTCSSCE
T ss_pred CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeC-C-EEEEEEEC---CCC--EEECCEEEECCCCChhhc
Confidence 4457777788888887 99998 47999998765 3 77777764 354 699999999999987544
No 65
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=96.08 E-value=0.014 Score=58.75 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=53.7
Q ss_pred chhHHHHHHHHHHHhCCCEEEcceeEEEEEEc----CCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh---------
Q 012358 68 NDSRLNVGLALTAALAGAAVLNHAEVISLIKD----EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC--------- 134 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~----~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa--------- 134 (465)
++..++..|.+.+.+.|++++.+++|+++..+ ++ . +.|.+. +. +++||.||+|+|.|+
T Consensus 107 ~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~--~-~~v~~~----~g--~i~ad~VVlAtG~~s~p~~g~~G~ 177 (401)
T 2gqf_A 107 GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKV--R-FVLQVN----ST--QWQCKNLIVATGGLSMPGLGATPF 177 (401)
T ss_dssp CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSC--C-EEEEET----TE--EEEESEEEECCCCSSCGGGTCCSH
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCC--e-EEEEEC----CC--EEECCEEEECCCCccCCCCCCChH
Confidence 56788899999999999999999999999875 32 3 445432 22 699999999999998
Q ss_pred -HHHhhhhcCC
Q 012358 135 -DSVRKLADQN 144 (465)
Q Consensus 135 -~~l~~~~g~~ 144 (465)
-.+++.+|..
T Consensus 178 g~~la~~~G~~ 188 (401)
T 2gqf_A 178 GYQIAEQFGIP 188 (401)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHCCCC
Confidence 4667777765
No 66
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=96.06 E-value=0.016 Score=57.64 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=54.6
Q ss_pred chhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 68 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
+...+...|.+.+.+.|++|+.+++|+++..+++ ..+.|++.+ +|+..+++||.||.|.|.|+. +++.++..
T Consensus 101 ~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~--~~~~v~~~~--~g~~~~~~a~~vV~AdG~~S~-vr~~l~~~ 172 (394)
T 1k0i_A 101 GQTEVTRDLMEAREACGATTVYQAAEVRLHDLQG--ERPYVTFER--DGERLRLDCDYIAGCDGFHGI-SRQSIPAE 172 (394)
T ss_dssp CHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTS--SSCEEEEEE--TTEEEEEECSEEEECCCTTCS-TGGGSCGG
T ss_pred chHHHHHHHHHHHHhcCCeEEeceeEEEEEEecC--CceEEEEec--CCcEEEEEeCEEEECCCCCcH-HHHhcCcc
Confidence 4456778888888889999999999999987532 224566633 465557999999999999987 66666543
No 67
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=96.04 E-value=0.16 Score=51.31 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.++.+|++...+ ++|+.+++|++|..+++ + +.|++. +|+ ++.||.||+|+.++.
T Consensus 236 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~--~-~~v~~~---~g~--~~~ad~vi~a~p~~~ 289 (470)
T 3i6d_A 236 TLVEEIEKQLKL--TKVYKGTKVTKLSHSGS--C-YSLELD---NGV--TLDADSVIVTAPHKA 289 (470)
T ss_dssp HHHHHHHHTCCS--EEEECSCCEEEEEECSS--S-EEEEES---SSC--EEEESEEEECSCHHH
T ss_pred HHHHHHHHhcCC--CEEEeCCceEEEEEcCC--e-EEEEEC---CCC--EEECCEEEECCCHHH
Confidence 555555554322 79999999999998764 3 445543 354 699999999999885
No 68
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=95.89 E-value=0.012 Score=61.05 Aligned_cols=69 Identities=16% Similarity=0.085 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEEEECCCC---cEEEEEccEEEEccCCC-hHHHhhhhc
Q 012358 73 NVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSG---KEFDTYAKVVVNAAGPF-CDSVRKLAD 142 (465)
Q Consensus 73 ~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg---~~~~i~a~~VVnAaG~w-a~~l~~~~g 142 (465)
..+++..|.++| ++|+.++.|+.|..+++|.+++||++.+. +| +..+|+|+.||+|||+| +++++...|
T Consensus 229 ~~~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~-~g~~~~~~~~~A~~VIlaaGa~~sp~lL~~Sg 302 (507)
T 1coy_A 229 DKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDE-QGNVVATKVVTADRVFFAAGSVGTSKLLVSMK 302 (507)
T ss_dssp TTTHHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECT-TSCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCC-CCcccccEEEEeCEEEEccCccCCHHHHHhcc
Confidence 345667777776 99999999999998753226899998742 34 35689999999999999 777776555
No 69
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=95.64 E-value=0.023 Score=49.78 Aligned_cols=67 Identities=15% Similarity=-0.007 Sum_probs=51.2
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
+.+..+...+.+.+.+.|++++.+ +|+++..+++ . +.|++. +| ++.||.||.|+|.++. +.+.+|.+
T Consensus 53 ~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~--~-~~v~~~---~g---~i~ad~vI~A~G~~~~-~~~~~g~~ 119 (180)
T 2ywl_A 53 PSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMGG--V-FEVETE---EG---VEKAERLLLCTHKDPT-LPSLLGLT 119 (180)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSS--S-EEEECS---SC---EEEEEEEEECCTTCCH-HHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCC--E-EEEEEC---CC---EEEECEEEECCCCCCC-ccccCCCC
Confidence 456778888888889999999998 9999987653 2 345432 24 6999999999999974 55666653
No 70
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=95.61 E-value=0.045 Score=57.33 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=53.8
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 145 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~~ 145 (465)
++...+...|.+.+.+. |+.+++|+++..+++ .+ .|++.+..+|+..+++|+.||.|.|.+|. +++.+|+..
T Consensus 135 i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~--~v-~v~~~~~~~G~~~~i~a~~vVgADG~~S~-vR~~lg~~~ 206 (549)
T 2r0c_A 135 CPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDD--HV-RATITDLRTGATRAVHARYLVACDGASSP-TRKALGIDA 206 (549)
T ss_dssp CCHHHHHHHHHHHHGGG---EECSEEEEEEEECSS--CE-EEEEEETTTCCEEEEEEEEEEECCCTTCH-HHHHHTCCC
T ss_pred cCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCC--EE-EEEEEECCCCCEEEEEeCEEEECCCCCcH-HHHHcCCCC
Confidence 34456767777777666 889999999988764 43 36666533465568999999999999987 778887653
No 71
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=95.55 E-value=0.019 Score=61.13 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=50.2
Q ss_pred eeEchhHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 65 GQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 65 g~vdp~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.++|+..+...+.+.+.+ .|++|+ +++|+.+..++ + ++++|.+. +|. ++.|+.||+|+|.|+
T Consensus 119 ~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~-g-~V~GV~t~---dG~--~I~Ad~VVLATGt~s 181 (651)
T 3ces_A 119 AQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVEN-D-RVVGAVTQ---MGL--KFRAKAVVLTVGTFL 181 (651)
T ss_dssp EEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESS-S-BEEEEEET---TSE--EEEEEEEEECCSTTT
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecC-C-EEEEEEEC---CCC--EEECCEEEEcCCCCc
Confidence 467888888888888887 699995 57999998765 3 78888874 353 799999999999985
No 72
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=95.53 E-value=0.0094 Score=62.48 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=52.5
Q ss_pred HHHHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcE--EEE-EccEEEEccCCC-hHHHhhhhcCC
Q 012358 74 VGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKE--FDT-YAKVVVNAAGPF-CDSVRKLADQN 144 (465)
Q Consensus 74 ~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~--~~i-~a~~VVnAaG~w-a~~l~~~~g~~ 144 (465)
.+++..+.+ .|++|+.++.|+.|..++ + +++||++.+..+|+. .++ .++.||+|||.| +.+++...|+.
T Consensus 199 ~~~l~~~~~~~~~~i~~~~~V~~i~~~~-~-~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig 272 (546)
T 1kdg_A 199 ATYLQTALARPNFTFKTNVMVSNVVRNG-S-QILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIG 272 (546)
T ss_dssp HTHHHHHHTCTTEEEECSCCEEEEEEET-T-EEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBS
T ss_pred HHHHHHHhhCCCcEEEeCCEEEEEEEeC-C-EEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCC
Confidence 457777765 589999999999999875 4 899999865324642 223 889999999998 57887776654
No 73
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=95.50 E-value=0.13 Score=50.72 Aligned_cols=66 Identities=21% Similarity=0.198 Sum_probs=52.9
Q ss_pred eEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 66 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 66 ~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
.++...+...|.+.+.+.|++|+.+++|+++.. + . .|++. +|+ +++||.||.|+|.++. ++++++.
T Consensus 103 ~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~--~--~v~~~---~g~--~~~ad~vV~AdG~~s~-vr~~l~~ 168 (379)
T 3alj_A 103 IMTRSHLHDALVNRARALGVDISVNSEAVAADP--V--G--RLTLQ---TGE--VLEADLIVGADGVGSK-VRDSIGF 168 (379)
T ss_dssp EEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--T--T--EEEET---TSC--EEECSEEEECCCTTCH-HHHHHCC
T ss_pred EECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--C--C--EEEEC---CCC--EEEcCEEEECCCccHH-HHHHhcC
Confidence 467788899999999999999999999999976 3 3 35543 354 6999999999999985 6666665
No 74
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=95.26 E-value=0.028 Score=56.35 Aligned_cols=69 Identities=13% Similarity=0.170 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 144 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~~ 144 (465)
+..+...+.+...++|++++.+++|+++..++ + ++.+|.+.| |+ ++.||.||.|+|.+.+ .+.+..|..
T Consensus 183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~-~v~~V~~~d---G~--~i~aD~Vv~a~G~~p~~~l~~~~gl~ 252 (404)
T 3fg2_P 183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAEG-D-RVTGVVLSD---GN--TLPCDLVVVGVGVIPNVEIAAAAGLP 252 (404)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-T-EEEEEEETT---SC--EEECSEEEECCCEEECCHHHHHTTCC
T ss_pred CHHHHHHHHHHHHhCCcEEEECCEEEEEEecC-C-cEEEEEeCC---CC--EEEcCEEEECcCCccCHHHHHhCCCC
Confidence 55677788888899999999999999998765 3 777887753 65 6999999999999865 466666654
No 75
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=95.23 E-value=0.036 Score=55.72 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=55.5
Q ss_pred chhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcCC
Q 012358 68 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 144 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~~ 144 (465)
.+..+...+.+...++|++|+.+++|+.+..++ + ++.+|.+.+ |+ ++.||.||+|+|.+.. .+++..|..
T Consensus 192 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~-~v~~v~l~d---G~--~i~aD~Vv~a~G~~p~~~l~~~~gl~ 262 (415)
T 3lxd_A 192 AGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDG-T-KVTGVRMQD---GS--VIPADIVIVGIGIVPCVGALISAGAS 262 (415)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEETCCEEEEEESS-S-BEEEEEESS---SC--EEECSEEEECSCCEESCHHHHHTTCC
T ss_pred cCHHHHHHHHHHHHhCCCEEEECCEEEEEEecC-C-cEEEEEeCC---CC--EEEcCEEEECCCCccChHHHHhCCCC
Confidence 356677778888889999999999999998765 3 777888753 65 6999999999999865 466666654
No 76
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=95.13 E-value=0.033 Score=59.11 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=49.9
Q ss_pred eeEchhHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 65 GQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 65 g~vdp~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.++|...+...+.+.+.+ .|++|+ +++|+++..++ + ++++|.+. +|. ++.|+.||+|+|.|+
T Consensus 118 ~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~-g-~V~GV~t~---dG~--~i~AdaVVLATG~~s 180 (637)
T 2zxi_A 118 AQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKN-N-QVVGVRTN---LGV--EYKTKAVVVTTGTFL 180 (637)
T ss_dssp EEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESS-S-BEEEEEET---TSC--EEECSEEEECCTTCB
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecC-C-EEEEEEEC---CCc--EEEeCEEEEccCCCc
Confidence 467878888888888877 599996 57999998865 3 78888875 364 699999999999874
No 77
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=95.07 E-value=0.4 Score=47.71 Aligned_cols=72 Identities=21% Similarity=0.089 Sum_probs=51.9
Q ss_pred EchhHHHHHHHHHHHh-CCC-EEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 67 MNDSRLNVGLALTAAL-AGA-AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~-~Ga-~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
++...+...|.+.+.+ .|+ +|+.+++|+++.. ++ . +.|.+.+..+|+..+++||.||.|.|.++. +++.++.
T Consensus 104 i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~--~-v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~-vR~~l~~ 177 (410)
T 3c96_A 104 IHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RD--G-RVLIGARDGHGKPQALGADVLVGADGIHSA-VRAHLHP 177 (410)
T ss_dssp EEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ET--T-EEEEEEEETTSCEEEEEESEEEECCCTTCH-HHHHHCT
T ss_pred eeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CC--c-cEEEEecCCCCCceEEecCEEEECCCccch-hHHHhcC
Confidence 5666788888888876 474 8999999999987 54 3 335655422354457999999999999975 5555544
No 78
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=94.81 E-value=0.058 Score=55.36 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=51.2
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
..+..+...|.+.+.+.|++++.+++| ++..++ + ++.||.+.+ ...++.|+.||+|+|.|+...
T Consensus 116 ~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~-~-~v~Gv~v~~----~~g~~~a~~VVlAtGg~~~~~ 179 (472)
T 2e5v_A 116 ETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKD-G-KVTGFVTEK----RGLVEDVDKLVLATGGYSYLY 179 (472)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEET-T-EEEEEEETT----TEEECCCSEEEECCCCCGGGS
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeC-C-EEEEEEEEe----CCCeEEeeeEEECCCCCcccC
Confidence 456778889999888899999999999 998765 4 788887742 223588999999999998643
No 79
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=94.78 E-value=0.09 Score=53.76 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=49.3
Q ss_pred chhHHHHHHHHHHHhCCCE--EEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 68 NDSRLNVGLALTAALAGAA--VLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga~--i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+...+...+...+.+.|+. ++.+++|+.+...+++ ..|.|++.+..+|+..++.+|.||+|+|.|+.
T Consensus 99 ~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~-~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~ 167 (464)
T 2xve_A 99 PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDS-QTFTVTVQDHTTDTIYSEEFDYVVCCTGHFST 167 (464)
T ss_dssp BHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTT-TEEEEEEEETTTTEEEEEEESEEEECCCSSSS
T ss_pred CHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCC-CcEEEEEEEcCCCceEEEEcCEEEECCCCCCC
Confidence 3445666666667778988 8899999999876532 35778877633454457999999999998754
No 80
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=94.71 E-value=0.018 Score=60.26 Aligned_cols=66 Identities=21% Similarity=0.186 Sum_probs=50.5
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCC--CCeEEEEEEEECCCCcEEEE---EccEEEEccCCC-hHHHhhhhcC
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFDT---YAKVVVNAAGPF-CDSVRKLADQ 143 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~--g~~v~gV~~~d~~tg~~~~i---~a~~VVnAaG~w-a~~l~~~~g~ 143 (465)
++..+.+.|++|++++.|+.|..+++ + +++||++.+. +|+..++ .++.||+|||.| +.+|+...|+
T Consensus 200 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~~~GV~~~~~-~g~~~~~~v~a~k~VILaaGa~~sp~lL~~SGi 271 (536)
T 1ju2_A 200 LLNKGNSNNLRVGVHASVEKIIFSNAPGL-TATGVIYRDS-NGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGV 271 (536)
T ss_dssp GGGGSCTTTEEEEESCEEEEEEECCSSSC-BEEEEEEECT-TSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred hhhhhcCCCcEEEeCCEEEEEEECCCCCC-EEEEEEEEeC-CCceEEEEeccCCEEEEcCcccCCHHHHHHcCC
Confidence 44456678999999999999988652 3 7899998752 4665566 579999999997 7777766554
No 81
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=94.64 E-value=0.053 Score=57.66 Aligned_cols=63 Identities=19% Similarity=0.331 Sum_probs=49.7
Q ss_pred eeEchhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 65 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 65 g~vdp~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.++|...+...+.+.+.+. |+++++ .+|+.+..++ + ++++|.+. +|. ++.|+.||+|+|.|+.
T Consensus 112 ~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~-g-~V~GV~t~---~G~--~i~Ad~VVLATG~~s~ 175 (641)
T 3cp8_A 112 AQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSANS-G-KFSSVTVR---SGR--AIQAKAAILACGTFLN 175 (641)
T ss_dssp EEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEET-T-EEEEEEET---TSC--EEEEEEEEECCTTCBT
T ss_pred hhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEecC-C-EEEEEEEC---CCc--EEEeCEEEECcCCCCC
Confidence 3578888888888888774 999975 5899998765 3 78888764 364 6999999999999854
No 82
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=94.63 E-value=0.11 Score=53.99 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH--HhhhhcCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS--VRKLADQN 144 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~--l~~~~g~~ 144 (465)
+..+...+.+...+.|++|+.+++|+++..++++ ++.++.+.. .+|+ .++.||.||+|+|.+... +++.+|..
T Consensus 254 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~-~v~~~~v~~-~~G~-~~i~aD~Vv~A~G~~p~~~~~l~~~gl~ 328 (523)
T 1mo9_A 254 DNETRAYVLDRMKEQGMEIISGSNVTRIEEDANG-RVQAVVAMT-PNGE-MRIETDFVFLGLGEQPRSAELAKILGLD 328 (523)
T ss_dssp SHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTS-BEEEEEEEE-TTEE-EEEECSCEEECCCCEECCHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCC-ceEEEEEEE-CCCc-EEEEcCEEEECcCCccCCccCHHHcCCc
Confidence 4567788888889999999999999999875443 553344332 1342 269999999999999764 56666654
No 83
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=94.59 E-value=0.11 Score=49.62 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCC-CcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLS-GKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~t-g~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+.+.+.|++++.+++|+++..++ + ++.+|.+.+..+ |+..++.||.||.|+|.-.+
T Consensus 184 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~-~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~ 248 (320)
T 1trb_A 184 KILIKRLMDKVENGNIILHTNRTLEEVTGDQ-M-GVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN 248 (320)
T ss_dssp HHHHHHHHHHHHTSSEEEECSCEEEEEEECS-S-SEEEEEEECCTTCCCCEEEECSEEEECSCEEES
T ss_pred HHHHHHHHHhcccCCeEEEcCceeEEEEcCC-C-ceEEEEEEeccCCCceEEEEcCEEEEEeCCCCC
Confidence 3455667777788999999999999998765 3 677888875323 54457999999999997643
No 84
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=94.38 E-value=0.038 Score=56.33 Aligned_cols=57 Identities=18% Similarity=0.093 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..++.+|++.+.++|++|+.+++|++|..+++ +++.|.+ ++. ++.||.||+|+++|.
T Consensus 234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~--~~~~v~~----~~~--~~~ad~vv~a~p~~~ 290 (477)
T 3nks_A 234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAE--GRWKVSL----RDS--SLEADHVISAIPASV 290 (477)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEECGG--GCEEEEC----SSC--EEEESEEEECSCHHH
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCC--ceEEEEE----CCe--EEEcCEEEECCCHHH
Confidence 46888999999999999999999999988653 4455643 233 699999999999985
No 85
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=93.98 E-value=1.2 Score=47.57 Aligned_cols=76 Identities=14% Similarity=0.075 Sum_probs=55.5
Q ss_pred EchhHHHHHHHHHHHhCC---CEEEcceeEEEEEEcC------CCCeEEEEEEEEC------------------------
Q 012358 67 MNDSRLNVGLALTAALAG---AAVLNHAEVISLIKDE------ASNRIIGARIRNN------------------------ 113 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~G---a~i~~~t~V~~i~~~~------~g~~v~gV~~~d~------------------------ 113 (465)
++-.++...|.+.+.+.| ++|..+++|+++..++ ++ ..+.|++.+.
T Consensus 116 l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~-~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (665)
T 1pn0_A 116 LHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEA-YPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQ 194 (665)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTC-CCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHH
T ss_pred eeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCC-CCEEEEEEeccccccccccccccccccccccccc
Confidence 455567788888888887 8999999999998764 11 1244555541
Q ss_pred ---------------CCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 114 ---------------LSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 114 ---------------~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
.+|+..+++|++||-|-|.+|. +++.+|+.
T Consensus 195 ~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~-VR~~lg~~ 239 (665)
T 1pn0_A 195 TQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSW-VRRTLGFE 239 (665)
T ss_dssp HHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCH-HHHHHTCC
T ss_pred ccccccccccccccCCCCceEEEEeCEEEeccCCCCH-HHHhcCCC
Confidence 2454457999999999999975 67777765
No 86
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=93.84 E-value=0.22 Score=47.73 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=46.2
Q ss_pred HHHHHHHhC-CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 75 GLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 75 ~l~~~A~~~-Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.+.+...+. |++++.+++|+.+..+++ ++.+|.+.+..+|+..++.+|.||.|+|.-..
T Consensus 213 ~~~~~l~~~~gv~i~~~~~v~~i~~~~~--~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 272 (338)
T 3itj_A 213 IMQKRAEKNEKIEILYNTVALEAKGDGK--LLNALRIKNTKKNEETDLPVSGLFYAIGHTPA 272 (338)
T ss_dssp HHHHHHHHCTTEEEECSEEEEEEEESSS--SEEEEEEEETTTTEEEEEECSEEEECSCEEEC
T ss_pred HHHHHHHhcCCeEEeecceeEEEEcccC--cEEEEEEEECCCCceEEEEeCEEEEEeCCCCC
Confidence 344555555 999999999999988653 67889988755666668999999999997643
No 87
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=93.81 E-value=0.081 Score=54.26 Aligned_cols=57 Identities=21% Similarity=0.134 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 70 SRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 70 ~rl~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..++.+|++.+.+.| ++|+.+++|++|...++ . +.|++. +|+ ++.||.||+|+|++.
T Consensus 255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~--~-v~v~~~---~g~--~~~ad~vI~a~~~~~ 312 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERD--A-ARVTAR---DGR--EFVAKRVVCTIPLNV 312 (495)
T ss_dssp HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSS--S-EEEEET---TCC--EEEEEEEEECCCGGG
T ss_pred HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCC--E-EEEEEC---CCC--EEEcCEEEECCCHHH
Confidence 368888998888899 99999999999988654 3 334432 354 699999999999875
No 88
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=93.73 E-value=0.15 Score=51.97 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 144 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~~ 144 (465)
+..+...+.+...+.|++++.+++|+++..++ + ++. |.+.+ |+ ++.||.||+|+|.+.+ .+.+.+|..
T Consensus 201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~-~v~-v~~~~---g~--~i~aD~Vv~a~G~~p~~~l~~~~gl~ 269 (472)
T 3iwa_A 201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGEN-G-KVA-RVITD---KR--TLDADLVILAAGVSPNTQLARDAGLE 269 (472)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEESS-S-BEE-EEEES---SC--EEECSEEEECSCEEECCHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcCCEEEeCCEEEEEEccC-C-eEE-EEEeC---CC--EEEcCEEEECCCCCcCHHHHHhCCcc
Confidence 45577778888889999999999999998754 3 444 55553 54 6999999999999864 466666654
No 89
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=93.73 E-value=0.12 Score=55.02 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=49.0
Q ss_pred CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC-hHHHhhhhcCC
Q 012358 83 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKLADQN 144 (465)
Q Consensus 83 ~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w-a~~l~~~~g~~ 144 (465)
.|++|++++.|+.|..++++++++||++.+..+|+..++.|+.||+|+|.. +.+++...|+.
T Consensus 273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG 335 (623)
T 3pl8_A 273 ERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFG 335 (623)
T ss_dssp EEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSS
T ss_pred CCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCC
Confidence 389999999999998864322789999987556877789999999999986 45666655553
No 90
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=93.60 E-value=0.096 Score=55.74 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=50.8
Q ss_pred EEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCC-CCeEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 59 AVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA-SNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 59 a~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~-g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
++.|+-|. -..++.+|++.+..+|++++.+++|..|..+++ | +++||.+. +|+ +|+|+.||..+..
T Consensus 369 g~~yp~GG--~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g-~v~gV~~~---~Ge--~i~A~~VVs~~~~ 435 (650)
T 1vg0_A 369 PFLFPLYG--QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESR-KCKAVIDQ---FGQ--RIISKHFIIEDSY 435 (650)
T ss_dssp SEEEETTC--TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTC-CEEEEEET---TSC--EEECSEEEEEGGG
T ss_pred ceEEeCCc--hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCC-eEEEEEeC---CCC--EEEcCEEEEChhh
Confidence 45555443 357889999999999999999999999988653 4 78888743 465 6899999885544
No 91
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=93.51 E-value=0.087 Score=52.24 Aligned_cols=68 Identities=16% Similarity=0.067 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH-HhhhhcCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS-VRKLADQN 144 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~-l~~~~g~~ 144 (465)
|..+...+.+...+.|++++.+++|+++..+++ . +.|.+. +|+ ++.||.||+|+|.+... +.+.+|..
T Consensus 186 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~--~-~~v~~~---~g~--~i~~d~vv~a~G~~p~~~l~~~~g~~ 254 (384)
T 2v3a_A 186 HPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGE--G-LEAHLS---DGE--VIPCDLVVSAVGLRPRTELAFAAGLA 254 (384)
T ss_dssp CHHHHHHHHHHHHTTTCEEEESCCEEEEEEETT--E-EEEEET---TSC--EEEESEEEECSCEEECCHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCC--E-EEEEEC---CCC--EEECCEEEECcCCCcCHHHHHHCCCC
Confidence 566778888888899999999999999987543 2 345543 354 69999999999998753 66666654
No 92
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=93.34 E-value=0.055 Score=55.92 Aligned_cols=68 Identities=18% Similarity=0.085 Sum_probs=49.8
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcC-CCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~-~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
++...+...|.+.+.+.|++|+.+++|+++..++ ++ ..+.|.+.+..+|+..+++||.||.|+|.++.
T Consensus 163 ~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~-~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~ 231 (497)
T 2bry_A 163 ISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKG-SGWRAQLQPNPPAQLASYEFDVLISAAGGKFV 231 (497)
T ss_dssp EEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTT-CCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCC-CEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence 4556788888888888999999999999998642 12 34667764311242235999999999999873
No 93
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=93.11 E-value=0.089 Score=52.77 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 144 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~~ 144 (465)
+..+...+.+...++|++++.+++|+++..++ ++.+|.+.| |+ ++.||.||.|+|.+.. .+++.+|..
T Consensus 184 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~---~~~~v~~~d---g~--~i~aD~Vv~a~G~~p~~~l~~~~gl~ 252 (410)
T 3ef6_A 184 GRRIGAWLRGLLTELGVQVELGTGVVGFSGEG---QLEQVMASD---GR--SFVADSALICVGAEPADQLARQAGLA 252 (410)
T ss_dssp CHHHHHHHHHHHHHHTCEEECSCCEEEEECSS---SCCEEEETT---SC--EEECSEEEECSCEEECCHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEeccC---cEEEEEECC---CC--EEEcCEEEEeeCCeecHHHHHhCCCc
Confidence 45567777778888999999999999997643 456677653 55 6999999999999865 466666654
No 94
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=93.10 E-value=0.17 Score=49.39 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=44.6
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+++..+...+...+.+.|++++.+++|+++..++++ +.|.+. +| ++.+|.||+|+|.|+
T Consensus 85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~---~~v~~~---~g---~~~~d~vVlAtG~~~ 143 (369)
T 3d1c_A 85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAY---YTIATT---TE---TYHADYIFVATGDYN 143 (369)
T ss_dssp CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS---EEEEES---SC---CEEEEEEEECCCSTT
T ss_pred CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe---EEEEeC---CC---EEEeCEEEECCCCCC
Confidence 445566666777778899999999999999876532 445442 23 589999999999986
No 95
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=93.08 E-value=0.27 Score=46.92 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=47.6
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhc
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLAD 142 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g 142 (465)
+.+.+.+.|++++.+++|+++..++ + ++.+|.+.+..+|+..++.+|.||+|+|.-.+ .+.+..|
T Consensus 196 l~~~l~~~gv~i~~~~~v~~i~~~~-~-~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g 261 (319)
T 3cty_A 196 YVQEIKKRNIPYIMNAQVTEIVGDG-K-KVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSG 261 (319)
T ss_dssp HHHHHHHTTCCEECSEEEEEEEESS-S-SEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSC
T ss_pred HHHHHhcCCcEEEcCCeEEEEecCC-c-eEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhcc
Confidence 4555668999999999999998764 3 57788887533566557999999999997543 3444333
No 96
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=93.04 E-value=0.33 Score=45.99 Aligned_cols=66 Identities=12% Similarity=-0.008 Sum_probs=49.7
Q ss_pred HHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcCC
Q 012358 76 LALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 144 (465)
Q Consensus 76 l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~~ 144 (465)
+.+.+.+ .|++++.+++|+.+..++ ++.+|.+.+..+|+..++.+|.||.|+|...+ .+.+..|..
T Consensus 195 ~~~~~~~~~gv~~~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~ 262 (323)
T 3f8d_A 195 YVETVKKKPNVEFVLNSVVKEIKGDK---VVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIE 262 (323)
T ss_dssp HHHHHHTCTTEEEECSEEEEEEEESS---SEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCC
T ss_pred HHHHHHhCCCcEEEeCCEEEEEeccC---ceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCee
Confidence 3444444 499999999999998753 56788888755677668999999999998765 666655543
No 97
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=92.95 E-value=0.16 Score=51.37 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEE--cCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIK--DEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 144 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~--~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~~ 144 (465)
+..+...+.+...+.|++++.+++|+++.. ++ + ++.+|.+. +|+ ++.||.||.|+|.+.+ .+.+.+|..
T Consensus 190 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~-~v~~v~~~---~G~--~i~~D~Vv~a~G~~p~~~l~~~~gl~ 261 (431)
T 1q1r_A 190 APPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQ-Q-KVTAVLCE---DGT--RLPADLVIAGIGLIPNCELASAAGLQ 261 (431)
T ss_dssp CHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTT-C-CEEEEEET---TSC--EEECSEEEECCCEEECCHHHHHTTCC
T ss_pred hHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCC-C-cEEEEEeC---CCC--EEEcCEEEECCCCCcCcchhhccCCC
Confidence 455666777778889999999999999986 43 3 66677764 354 6999999999998754 566666654
No 98
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=92.91 E-value=1.4 Score=44.52 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh-HHHhhhhcCC--CCC
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC-DSVRKLADQN--VQP 147 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa-~~l~~~~g~~--~~~ 147 (465)
.++.+|++...+ ++|+.+++|++|..+++ + +.|++. +| ++.||.||+|+++|. ..+....... ...
T Consensus 237 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~--~-~~v~~~---~g---~~~ad~vV~a~p~~~~~~ll~~~~~~~~~~~ 305 (475)
T 3lov_A 237 SLIERLEEVLER--SEIRLETPLLAISREDG--R-YRLKTD---HG---PEYADYVLLTIPHPQVVQLLPDAHLPELEQL 305 (475)
T ss_dssp HHHHHHHHHCSS--CEEESSCCCCEEEEETT--E-EEEECT---TC---CEEESEEEECSCHHHHHHHCTTSCCHHHHTC
T ss_pred HHHHHHHhhccC--CEEEcCCeeeEEEEeCC--E-EEEEEC---CC---eEECCEEEECCCHHHHHHHcCccCHHHHhcC
Confidence 355555544322 79999999999988764 3 334432 34 699999999999986 3443211000 012
Q ss_pred ceeecceeEEEeCCCCC-CC-CceEEeeccCCCcEEEEE------ecC--CeE-E---EcccCCCCCCCCCCCCCHHHHH
Q 012358 148 MICPSSGVHIVLPDYYS-PE-GMGLIVPKTKDGRVVFML------PWL--GRT-V---AGTTDSDTVITLLPEPHEDEIQ 213 (465)
Q Consensus 148 ~i~p~kG~~lv~~~~~~-~~-~~~~~~~~~~dgr~~~~~------P~~--g~~-l---iG~td~~~~~~~~~~~~~~~i~ 213 (465)
+..+....++.++.+.. +. ..+++++...+..+..+. |.. +.. + +|..... ......+++-++
T Consensus 306 ~~~~~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~l~~~~~~~~~~---~~~~~~~e~~~~ 382 (475)
T 3lov_A 306 TTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPDHTVLRAFVGRPGND---HLVHESDEVLQQ 382 (475)
T ss_dssp CEEEEEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTTEEEEEEEECBTTBC---GGGGSCHHHHHH
T ss_pred CCCeEEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEEcccCCCCCCCcEEEEEEeCCCCCC---cccCCCHHHHHH
Confidence 34555556677765431 11 123444322111211111 110 112 2 2221111 001112344557
Q ss_pred HHHHHHhhhccccCCcC-CeeEeeeeeeecc
Q 012358 214 FILDAISDYLNVKVRRT-DVLSAWSGIRPLA 243 (465)
Q Consensus 214 ~ll~~~~~~~~p~L~~~-~i~~~waG~RP~~ 243 (465)
.+++.+.++|+...... -.+..|..-.|..
T Consensus 383 ~~~~~L~~~~g~~~~p~~~~v~~w~~a~p~~ 413 (475)
T 3lov_A 383 AVLQDLEKICGRTLEPKQVIISRLMDGLPAY 413 (475)
T ss_dssp HHHHHHHHHHSSCCCCSEEEEEEEEEEEECC
T ss_pred HHHHHHHHHhCCCCCCeEEEEEEcccCCCCC
Confidence 88888999884221111 2367888877744
No 99
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=92.83 E-value=0.37 Score=45.66 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=43.2
Q ss_pred HHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 77 ALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 77 ~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
.+...+ .|++++.+++|+.+..++ + ++.+|.+.+..+|+..++.+|.||.|+|.-
T Consensus 186 ~~~l~~~~gv~v~~~~~v~~i~~~~-~-~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 241 (310)
T 1fl2_A 186 QDKLRSLKNVDIILNAQTTEVKGDG-S-KVVGLEYRDRVSGDIHNIELAGIFVQIGLL 241 (310)
T ss_dssp HHHHHTCTTEEEESSEEEEEEEESS-S-SEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred HHHHhhCCCeEEecCCceEEEEcCC-C-cEEEEEEEECCCCcEEEEEcCEEEEeeCCc
Confidence 344455 699999999999998764 3 677888887545766689999999999964
No 100
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=92.83 E-value=0.43 Score=46.36 Aligned_cols=67 Identities=9% Similarity=0.005 Sum_probs=46.8
Q ss_pred chhHHHHHHHHHHHhC-CCEEEcceeEEEEEEcC--CCC--eEEEEEEEEC---------CCCcEEEEEc----------
Q 012358 68 NDSRLNVGLALTAALA-GAAVLNHAEVISLIKDE--ASN--RIIGARIRNN---------LSGKEFDTYA---------- 123 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~-Ga~i~~~t~V~~i~~~~--~g~--~v~gV~~~d~---------~tg~~~~i~a---------- 123 (465)
+...+...|.+.+.+. |++++++++|+++..+. +++ +|.||.+... ...+..+|.|
T Consensus 144 ~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~ 223 (326)
T 2gjc_A 144 HAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRD 223 (326)
T ss_dssp CHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCC
T ss_pred chHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccc
Confidence 3456788888888885 99999999999998763 112 6888887521 1113346888
Q ss_pred -----cEEEEccCCCh
Q 012358 124 -----KVVVNAAGPFC 134 (465)
Q Consensus 124 -----~~VVnAaG~wa 134 (465)
+.||+|+|..+
T Consensus 224 ~~~~~~~VV~ATG~~~ 239 (326)
T 2gjc_A 224 LSQKHGVILSTTGHDG 239 (326)
T ss_dssp SSTTCCEEEECCCCC-
T ss_pred ccccCCEEEECcCCCc
Confidence 88888888654
No 101
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=92.79 E-value=0.15 Score=49.08 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
..+...+...+.+.|++++.+++|+++..+++ .+.+|.+. +| ++.+|.||+|+|.|+..
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~v~~~---~g---~~~~d~vV~AtG~~~~~ 134 (357)
T 4a9w_A 76 AEVLAYLAQYEQKYALPVLRPIRVQRVSHFGE--RLRVVARD---GR---QWLARAVISATGTWGEA 134 (357)
T ss_dssp HHHHHHHHHHHHHTTCCEECSCCEEEEEEETT--EEEEEETT---SC---EEEEEEEEECCCSGGGB
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEECCC--cEEEEEeC---CC---EEEeCEEEECCCCCCCC
Confidence 56777777788889999999999999988753 32225432 23 79999999999998743
No 102
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=92.73 E-value=0.26 Score=49.88 Aligned_cols=62 Identities=10% Similarity=0.010 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCc-EEEEEccEEEEccCCChH
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGK-EFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~-~~~i~a~~VVnAaG~wa~ 135 (465)
.+...+...+.+.+..++.+++|+++...++ .|.|++.+..+|+ ..++.+|.||+|+|.|+.
T Consensus 116 ~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~---~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~ 178 (447)
T 2gv8_A 116 TIQEYQRIYAQPLLPFIKLATDVLDIEKKDG---SWVVTYKGTKAGSPISKDIFDAVSICNGHYEV 178 (447)
T ss_dssp HHHHHHHHHHGGGGGGEECSEEEEEEEEETT---EEEEEEEESSTTCCEEEEEESEEEECCCSSSS
T ss_pred HHHHHHHHHHHHhhCeEEeCCEEEEEEeCCC---eEEEEEeecCCCCeeEEEEeCEEEECCCCCCC
Confidence 3444455555666888999999999987653 3667776532354 446999999999999864
No 103
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=92.57 E-value=0.11 Score=54.88 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=50.5
Q ss_pred HHHH-HHHhCCCEEEcceeEEEEEEcCCC--CeEEEEEEEECCCCcEEEEEc-cEEEEccCCC-hHHHhhhhcC
Q 012358 75 GLAL-TAALAGAAVLNHAEVISLIKDEAS--NRIIGARIRNNLSGKEFDTYA-KVVVNAAGPF-CDSVRKLADQ 143 (465)
Q Consensus 75 ~l~~-~A~~~Ga~i~~~t~V~~i~~~~~g--~~v~gV~~~d~~tg~~~~i~a-~~VVnAaG~w-a~~l~~~~g~ 143 (465)
+++. .+.+.|++|+.++.|+.|..++++ ++++||.+.+ .+|+..+|+| +.||+|||.. +++|+...|+
T Consensus 235 ~~l~~~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~-~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGI 307 (587)
T 1gpe_A 235 AWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGT-NKAVNFDVFAKHEVLLAAGSAISPLILEYSGI 307 (587)
T ss_dssp HHTTTTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEE-ETTEEEEEEEEEEEEECSCTTTHHHHHHHTTE
T ss_pred HHHHHhhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEe-CCCcEEEEEecccEEEccCCCCCHHHHHhCCC
Confidence 4443 334578999999999999875311 1789999874 2577778999 9999999984 7777766554
No 104
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=92.53 E-value=0.37 Score=47.15 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHh-CCCEEEcceeEEEEEEcCC-----------------CCeEEEEEEEEC---CCC------cEEEE
Q 012358 69 DSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEA-----------------SNRIIGARIRNN---LSG------KEFDT 121 (465)
Q Consensus 69 p~rl~~~l~~~A~~-~Ga~i~~~t~V~~i~~~~~-----------------g~~v~gV~~~d~---~tg------~~~~i 121 (465)
...++..|.+.+.+ .|++++++++|+++..+++ +.+|.||.+... ..| +..+|
T Consensus 159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i 238 (344)
T 3jsk_A 159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI 238 (344)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence 45677888888888 5999999999999987541 116778877531 112 33589
Q ss_pred EccEEEEccCCChH
Q 012358 122 YAKVVVNAAGPFCD 135 (465)
Q Consensus 122 ~a~~VVnAaG~wa~ 135 (465)
+|+.||+|+|..+.
T Consensus 239 ~Ak~VV~ATG~~s~ 252 (344)
T 3jsk_A 239 NAPVIISTTGHDGP 252 (344)
T ss_dssp ECSEEEECCCSSSS
T ss_pred EcCEEEECCCCCch
Confidence 99999999998864
No 105
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=92.49 E-value=0.16 Score=52.27 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
+..+...+.+...+.|++|+.+++|+++..+++ ++ .|.+. +|+ ++.||.||+|+|.+...
T Consensus 222 d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~--~v-~v~~~---~g~--~i~aD~Vv~a~G~~p~~ 281 (499)
T 1xdi_A 222 DADAALVLEESFAERGVRLFKNARAASVTRTGA--GV-LVTMT---DGR--TVEGSHALMTIGSVPNT 281 (499)
T ss_dssp SHHHHHHHHHHHHHTTCEEETTCCEEEEEECSS--SE-EEEET---TSC--EEEESEEEECCCEEECC
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC--EE-EEEEC---CCc--EEEcCEEEECCCCCcCC
Confidence 445777788888899999999999999987653 32 34332 343 69999999999998654
No 106
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=92.46 E-value=0.23 Score=52.28 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=52.6
Q ss_pred HHHHHHH-HhCCCEEEcceeEEEEEEcC---CCCeEEEEEEEECCCCcEEEEEcc-EEEEccCCC-hHHHhhhhcCC
Q 012358 74 VGLALTA-ALAGAAVLNHAEVISLIKDE---ASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPF-CDSVRKLADQN 144 (465)
Q Consensus 74 ~~l~~~A-~~~Ga~i~~~t~V~~i~~~~---~g~~v~gV~~~d~~tg~~~~i~a~-~VVnAaG~w-a~~l~~~~g~~ 144 (465)
.+++..+ .+.+.+|++++.|+.|..+. ++ +++||++.+. +|...+|+|+ -||+|||+. +++|+..-|+-
T Consensus 230 ~ayL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~-ra~GV~~~~~-~G~~~~v~A~kEVILsAGa~~SPqLL~lSGIG 304 (583)
T 3qvp_A 230 REWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTP-RAVGVEFGTH-KGNTHNVYAKHEVLLAAGSAVSPTILEYSGIG 304 (583)
T ss_dssp HHHTTTTTTCTTEEEECSCEEEEEEEECSSSSC-EEEEEEEESS-TTCEEEEEEEEEEEECSCTTTHHHHHHHTTBS
T ss_pred HHHHHHhhcCCCcEEEcCCEEEEEEeccCCCCC-EEEEEEEEec-CCcEEEEEECCEEEEeCCccCCHHHHHHcCCC
Confidence 3444433 35689999999999998862 24 8999998742 5777889996 599999987 88888777764
No 107
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=92.33 E-value=0.21 Score=52.17 Aligned_cols=63 Identities=19% Similarity=0.092 Sum_probs=47.8
Q ss_pred EchhHHHHHHHHHHHhCCC--EEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 67 MNDSRLNVGLALTAALAGA--AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga--~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.+...+...+...+.+.|+ .++.+++|+++..++++ ..|.|.+. +|+ ++.||.||+|+|.++.
T Consensus 84 ~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~-~~~~V~~~---~G~--~i~ad~lV~AtG~~s~ 148 (540)
T 3gwf_A 84 ITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDE-NLWEVTTD---HGE--VYRAKYVVNAVGLLSA 148 (540)
T ss_dssp EEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTT-TEEEEEET---TSC--EEEEEEEEECCCSCCS
T ss_pred CCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCC-CEEEEEEc---CCC--EEEeCEEEECCccccc
Confidence 4455666667777788898 89999999999876543 45667664 365 6999999999998763
No 108
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=92.18 E-value=0.5 Score=47.81 Aligned_cols=50 Identities=18% Similarity=-0.005 Sum_probs=40.8
Q ss_pred CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 83 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 83 ~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.|++++.+++|+++..+++ .+.|.+.+..+|+..++.||.||+|+|.-.+
T Consensus 329 ~~v~i~~~~~v~~v~~~~~---~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~ 378 (463)
T 3s5w_A 329 PRHAFRCMTTVERATATAQ---GIELALRDAGSGELSVETYDAVILATGYERQ 378 (463)
T ss_dssp CCSEEETTEEEEEEEEETT---EEEEEEEETTTCCEEEEEESEEEECCCEECC
T ss_pred CCeEEEeCCEEEEEEecCC---EEEEEEEEcCCCCeEEEECCEEEEeeCCCCC
Confidence 6999999999999987653 3567887665687678999999999998654
No 109
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=92.08 E-value=0.17 Score=52.09 Aligned_cols=67 Identities=22% Similarity=0.167 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH--H-hhhhcC
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS--V-RKLADQ 143 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~--l-~~~~g~ 143 (465)
..+...+.+.+.+.|++|+.+++|+++..+++ +.+.|.+. +|+ ++.||.||+|+|.+... + ++.+|.
T Consensus 231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~~~~v~~~---~G~--~i~~D~vv~a~G~~p~~~~L~l~~~gl 300 (490)
T 1fec_A 231 SELRKQLTEQLRANGINVRTHENPAKVTKNAD--GTRHVVFE---SGA--EADYDVVMLAIGRVPRSQTLQLEKAGV 300 (490)
T ss_dssp HHHHHHHHHHHHHTTEEEEETCCEEEEEECTT--SCEEEEET---TSC--EEEESEEEECSCEEESCTTSCGGGGTC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--CEEEEEEC---CCc--EEEcCEEEEccCCCcCccccCchhcCc
Confidence 45677788888899999999999999987653 23455553 354 69999999999988653 3 344454
No 110
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=91.71 E-value=0.19 Score=51.23 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEE-EEECCCCcEEEEEccEEEEccCCChHH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR-IRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~-~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
+..+...+.+.+.+.|++++.+++|+++..+++ +...|. +. +|+ +.||.||+|+|.+...
T Consensus 210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~~~~v~~~~---~g~---i~aD~Vv~a~G~~p~~ 270 (463)
T 4dna_A 210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSADAD--GRRVATTMK---HGE---IVADQVMLALGRMPNT 270 (463)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEECTT--SCEEEEESS---SCE---EEESEEEECSCEEESC
T ss_pred CHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCC--CEEEEEEcC---CCe---EEeCEEEEeeCcccCC
Confidence 456778888888999999999999999988654 333455 42 352 9999999999998653
No 111
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=91.48 E-value=0.6 Score=47.70 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+..+...+.+...+.|++++.+++|+++...+++ . ..|.+.+..+|+..++.+|.||+|+|.-
T Consensus 226 d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~~v~~~~~~~~~~~~~~~D~vi~a~G~~ 288 (483)
T 3dgh_A 226 DQQMAELVAASMEERGIPFLRKTVPLSVEKQDDG-K-LLVKYKNVETGEESEDVYDTVLWAIGRK 288 (483)
T ss_dssp CHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTS-C-EEEEEEETTTCCEEEEEESEEEECSCEE
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC-c-EEEEEecCCCCceeEEEcCEEEECcccc
Confidence 4456677777888999999999999999875543 3 3477766444555689999999999974
No 112
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=91.47 E-value=0.56 Score=48.02 Aligned_cols=63 Identities=19% Similarity=0.106 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+..+...+.+...+.|++++.+++|+++..+++ . ..|.+.+..+|+..++.+|.||+|+|.-.
T Consensus 238 d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~--~-~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p 300 (491)
T 3urh_A 238 DGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGD--G-AKVTFEPVKGGEATTLDAEVVLIATGRKP 300 (491)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSEEEEEEEEETT--E-EEEEEEETTSCCCEEEEESEEEECCCCEE
T ss_pred CHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCC--E-EEEEEEecCCCceEEEEcCEEEEeeCCcc
Confidence 455667777778889999999999999987653 3 44666653335445799999999999754
No 113
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=91.17 E-value=0.27 Score=50.55 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 144 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~~ 144 (465)
|..+...+.+...++|++++.+++|+++..++ + . ..|.+. +|+ ++.||.||+|+|.... .+++..|..
T Consensus 225 ~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~-~-~-~~v~l~---dG~--~i~aD~Vv~a~G~~pn~~l~~~~gl~ 293 (493)
T 1m6i_A 225 PEYLSNWTMEKVRREGVKVMPNAIVQSVGVSS-G-K-LLIKLK---DGR--KVETDHIVAAVGLEPNVELAKTGGLE 293 (493)
T ss_dssp CHHHHHHHHHHHHTTTCEEECSCCEEEEEEET-T-E-EEEEET---TSC--EEEESEEEECCCEEECCTTHHHHTCC
T ss_pred CHHHHHHHHHHHHhcCCEEEeCCEEEEEEecC-C-e-EEEEEC---CCC--EEECCEEEECCCCCccHHHHHHcCCc
Confidence 45667777778889999999999999998654 2 3 345553 354 6999999999999865 366666654
No 114
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=90.66 E-value=0.3 Score=51.38 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=47.6
Q ss_pred HhCCCEEEcceeEEEEEEcC-CCCeEEEEEEEECCCCcEEEEEc-cEEEEccCCC-hHHHhhhhcC
Q 012358 81 ALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPF-CDSVRKLADQ 143 (465)
Q Consensus 81 ~~~Ga~i~~~t~V~~i~~~~-~g~~v~gV~~~d~~tg~~~~i~a-~~VVnAaG~w-a~~l~~~~g~ 143 (465)
.+.+.+|+.++.|+.|..+. ++ +++||++.+. +|...+|+| +-||+|||.. +++|+..-|+
T Consensus 217 ~r~Nl~v~~~a~v~ri~~~~~~~-~a~GV~~~~~-~g~~~~v~A~keVILsaGa~~sp~lL~~SGI 280 (577)
T 3q9t_A 217 NKPNITIVPEVHSKRLIINEADR-TCKGVTVVTA-AGNELNFFADREVILSQGVFETPKLLMLSGI 280 (577)
T ss_dssp SCTTEEEECSEEEEEEEEETTTT-EEEEEEEEET-TSCEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred cCCCeEEEcCcEEEEEEEeCCCC-EEEEEEEEeC-CCcEEEEEeeeEEEEcccccCChHHHHHcCC
Confidence 35689999999999999873 24 8999999863 377778999 5699999987 6677665553
No 115
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=90.58 E-value=0.34 Score=50.68 Aligned_cols=61 Identities=23% Similarity=0.234 Sum_probs=46.3
Q ss_pred chhHHHHHHHHHHHhCCC--EEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 68 NDSRLNVGLALTAALAGA--AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga--~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+...+...+...+.+.|+ .++.+++|+++..++++ ..|.|++. +|+ ++.||.||+|+|.++
T Consensus 97 ~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~-~~w~V~~~---~G~--~i~ad~lV~AtG~~s 159 (549)
T 4ap3_A 97 TQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEG-LRWTVRTD---RGD--EVSARFLVVAAGPLS 159 (549)
T ss_dssp BHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTT-TEEEEEET---TCC--EEEEEEEEECCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCC-CEEEEEEC---CCC--EEEeCEEEECcCCCC
Confidence 445566666667788898 88999999999876543 45667664 465 699999999999875
No 116
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=90.52 E-value=0.69 Score=44.92 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhc
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLAD 142 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g 142 (465)
.+...+.+...+.|++++.+++|+++..++ + ++.+|.+.. .+|+..++.+|.||.|+|...+ .+.+..+
T Consensus 203 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~-~-~v~~v~~~~-~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~ 272 (360)
T 3ab1_A 203 KTAHEVERARANGTIDVYLETEVASIEESN-G-VLTRVHLRS-SDGSKWTVEADRLLILIGFKSNLGPLARWD 272 (360)
T ss_dssp HHHHSSHHHHHHTSEEEESSEEEEEEEEET-T-EEEEEEEEE-TTCCEEEEECSEEEECCCBCCSCGGGGGSS
T ss_pred HHHHHHHHHhhcCceEEEcCcCHHHhccCC-C-ceEEEEEEe-cCCCeEEEeCCEEEECCCCCCCHHHHHhhc
Confidence 345556666778899999999999998765 3 677787762 2465557999999999997654 3444444
No 117
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=90.51 E-value=1.2 Score=42.46 Aligned_cols=70 Identities=17% Similarity=0.022 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcC
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQ 143 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~ 143 (465)
.+...+.+...+.|++++.+++|+.+..+ + ++.+|.+.+..+|+..++.+|.||.|+|.-.+ .+.+.++.
T Consensus 192 ~~~~~l~~~l~~~gv~v~~~~~v~~i~~~--~-~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~ 262 (335)
T 2zbw_A 192 ASVKELMKAHEEGRLEVLTPYELRRVEGD--E-RVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGL 262 (335)
T ss_dssp HHHHHHHHHHHTTSSEEETTEEEEEEEES--S-SEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCC
T ss_pred HHHHHHHhccccCCeEEecCCcceeEccC--C-CeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcce
Confidence 44555666667789999999999999874 3 56678876433465557999999999998754 34444443
No 118
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=90.43 E-value=1.1 Score=45.68 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEE--cCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIK--DEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~--~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+...+.|++++.+++|+++.. ++ ..+.|.+.+..+|+..++.+|.||+|+|...+
T Consensus 224 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~---~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~ 288 (478)
T 1v59_A 224 GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDK---NVVEIVVEDTKTNKQENLEAEVLLVAVGRRPY 288 (478)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTT---TEEEEEEEETTTTEEEEEEESEEEECSCEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCC---CeEEEEEEEcCCCCceEEECCEEEECCCCCcC
Confidence 45666777778889999999999999986 33 34556665322344457999999999998754
No 119
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=90.43 E-value=0.39 Score=49.15 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+..+...+.+.+.+.|++++.+++|+++..+++ ++ .|.+. +|+ ++.||.||+|+|....
T Consensus 231 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~--~v-~v~~~---~g~--~i~aD~Vi~A~G~~p~ 289 (484)
T 3o0h_A 231 DYDLRQLLNDAMVAKGISIIYEATVSQVQSTEN--CY-NVVLT---NGQ--TICADRVMLATGRVPN 289 (484)
T ss_dssp CHHHHHHHHHHHHHHTCEEESSCCEEEEEECSS--SE-EEEET---TSC--EEEESEEEECCCEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCC--EE-EEEEC---CCc--EEEcCEEEEeeCCCcC
Confidence 456777888888899999999999999988653 33 45553 354 6999999999998754
No 120
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=90.41 E-value=0.89 Score=46.22 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+..+...+.+...+.|++++.+++|+++..+++ ..+.|.+.+..+++..++.+|.||+|+|...+
T Consensus 219 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~ 283 (474)
T 1zmd_A 219 DMEISKNFQRILQKQGFKFKLNTKVTGATKKSD--GKIDVSIEAASGGKAEVITCDVLLVCIGRRPF 283 (474)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSEEEEEEEECTT--SCEEEEEEETTSCCCEEEEESEEEECSCEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCC--ceEEEEEEecCCCCceEEEcCEEEECcCCCcC
Confidence 345667777788899999999999999987653 32345543211233347999999999998754
No 121
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=90.35 E-value=0.5 Score=48.02 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+..+...+.+...++|++++.+++|+++..++ ..+.|.+ ++. ++.||.||+|+|.|..
T Consensus 215 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~---~~~~v~~----~~~--~i~aD~Vv~a~G~~p~ 272 (467)
T 1zk7_A 215 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHMD---GEFVLTT----THG--ELRADKLLVATGRTPN 272 (467)
T ss_dssp CHHHHHHHHHHHHHTTCEEETTCCEEEEEEET---TEEEEEE----TTE--EEEESEEEECSCEEES
T ss_pred CHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC---CEEEEEE----CCc--EEEcCEEEECCCCCcC
Confidence 45677888888899999999999999998754 2344443 232 7999999999999865
No 122
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=90.27 E-value=0.5 Score=45.93 Aligned_cols=61 Identities=20% Similarity=0.119 Sum_probs=47.4
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+++..+...+.+.+.+.|++++.+++|+.+...+++ .+.|.+. +|+ ++.+|.||+|+|..+
T Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~v~~~---~g~--~~~~~~li~AtG~~~ 131 (360)
T 3ab1_A 71 VPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDG--TFETRTN---TGN--VYRSRAVLIAAGLGA 131 (360)
T ss_dssp EEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTTS--CEEEEET---TSC--EEEEEEEEECCTTCS
T ss_pred CCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCc--eEEEEEC---CCc--EEEeeEEEEccCCCc
Confidence 567788888888888899999999999999876532 3445543 353 699999999999853
No 123
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=90.07 E-value=1 Score=42.94 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=42.8
Q ss_pred HHHHHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 76 LALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 76 l~~~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+.+...+ .|++++.+++|+.+..+ + ++.+|.+.+..+|+..++.+|.||.|+|.-.+
T Consensus 193 ~~~~l~~~~gv~i~~~~~v~~i~~~--~-~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 250 (325)
T 2q7v_A 193 AQARAFANPKMKFIWDTAVEEIQGA--D-SVSGVKLRNLKTGEVSELATDGVFIFIGHVPN 250 (325)
T ss_dssp HHHHHHTCTTEEEECSEEEEEEEES--S-SEEEEEEEETTTCCEEEEECSEEEECSCEEES
T ss_pred HHHHHHhcCCceEecCCceEEEccC--C-cEEEEEEEECCCCcEEEEEcCEEEEccCCCCC
Confidence 3444444 59999999999999864 3 56788887533576567999999999997543
No 124
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=90.03 E-value=0.98 Score=45.82 Aligned_cols=63 Identities=10% Similarity=0.089 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHH-HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTA-ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A-~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+..+...+.+.. .+.|++++.+++|+++..+++ . +.|.+.+ .+|+..++.+|.||+|+|....
T Consensus 214 d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~--~-~~v~~~~-~~g~~~~i~~D~vv~a~G~~p~ 277 (468)
T 2qae_A 214 DEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGD--S-VSLEVEG-KNGKRETVTCEALLVSVGRRPF 277 (468)
T ss_dssp CHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSS--S-EEEEEEC-C---EEEEEESEEEECSCEEEC
T ss_pred CHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCC--e-EEEEEEc-CCCceEEEECCEEEECCCcccC
Confidence 345666777777 889999999999999987653 3 3455541 1253347999999999998754
No 125
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=89.61 E-value=1.2 Score=45.51 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+..+...+.+...+.|++++.++.|..+...+++ . ..|.+.+..+|+..++.+|.||.|+|.-
T Consensus 224 d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~-~-~~v~~~~~~~g~~~~~~~D~vi~a~G~~ 286 (488)
T 3dgz_A 224 DQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTN-Q-LQVTWEDHASGKEDTGTFDTVLWAIGRV 286 (488)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTS-C-EEEEEEETTTTEEEEEEESEEEECSCEE
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCC-c-EEEEEEeCCCCeeEEEECCEEEEcccCC
Confidence 3456677777788999999999999999875433 2 4466665434655568999999999964
No 126
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=89.55 E-value=0.44 Score=45.62 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=44.8
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+++..+...+.+.+.+.|++++.++ |+++..+++ . +.|.+ +|. +++++.||+|+|.|.
T Consensus 67 ~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~--~-~~v~~----~~~--~~~~~~vv~A~G~~~ 124 (333)
T 1vdc_A 67 ILGVELTDKFRKQSERFGTTIFTET-VTKVDFSSK--P-FKLFT----DSK--AILADAVILAIGAVA 124 (333)
T ss_dssp EEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSSS--S-EEEEC----SSE--EEEEEEEEECCCEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcCC--E-EEEEE----CCc--EEEcCEEEECCCCCc
Confidence 5667788888888889999999886 999977543 2 33443 243 699999999999985
No 127
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=89.55 E-value=0.32 Score=49.41 Aligned_cols=57 Identities=23% Similarity=0.119 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..++.+|++.. |++|+.+++|++|..+++ + +.|++.+..+|+ ++.||.||+|+++|.
T Consensus 238 ~~l~~~l~~~l---g~~i~~~~~V~~i~~~~~--~-~~v~~~~~~~g~--~~~ad~vV~a~~~~~ 294 (478)
T 2ivd_A 238 QVLIDALAASL---GDAAHVGARVEGLAREDG--G-WRLIIEEHGRRA--ELSVAQVVLAAPAHA 294 (478)
T ss_dssp HHHHHHHHHHH---GGGEESSEEEEEEECC----C-CEEEEEETTEEE--EEECSEEEECSCHHH
T ss_pred HHHHHHHHHHh---hhhEEcCCEEEEEEecCC--e-EEEEEeecCCCc--eEEcCEEEECCCHHH
Confidence 35666676654 789999999999987653 3 556653211233 699999999999985
No 128
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=89.49 E-value=1.3 Score=41.81 Aligned_cols=57 Identities=12% Similarity=-0.010 Sum_probs=42.8
Q ss_pred HHHHHH-hCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 76 LALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 76 l~~~A~-~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+.+... +.|++++.+++|+.+..+++ ++.+|.+.+..+|+..++.+|.||.|+|.-.
T Consensus 184 ~~~~l~~~~gv~v~~~~~v~~i~~~~~--~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p 241 (311)
T 2q0l_A 184 TLEHAKNNDKIEFLTPYVVEEIKGDAS--GVSSLSIKNTATNEKRELVVPGFFIFVGYDV 241 (311)
T ss_dssp HHHHHHTCTTEEEETTEEEEEEEEETT--EEEEEEEEETTTCCEEEEECSEEEECSCEEE
T ss_pred HHHHHhhCCCeEEEeCCEEEEEECCCC--cEeEEEEEecCCCceEEEecCEEEEEecCcc
Confidence 344444 37999999999999987643 6667888753356656799999999999754
No 129
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=89.31 E-value=0.55 Score=48.26 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+...+.|++|+.+++|+++..+++ +...|.+. +|+ ++.||.||+|+|....
T Consensus 235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~~~~v~~~---~G~--~i~~D~vv~a~G~~p~ 293 (495)
T 2wpf_A 235 ETIREEVTKQLTANGIEIMTNENPAKVSLNTD--GSKHVTFE---SGK--TLDVDVVMMAIGRIPR 293 (495)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECTT--SCEEEEET---TSC--EEEESEEEECSCEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--ceEEEEEC---CCc--EEEcCEEEECCCCccc
Confidence 45667777788899999999999999987643 23456553 354 6999999999998754
No 130
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=89.30 E-value=1.3 Score=45.03 Aligned_cols=65 Identities=15% Similarity=0.026 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcE--EEEEccEEEEccCCCh
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKE--FDTYAKVVVNAAGPFC 134 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~--~~i~a~~VVnAaG~wa 134 (465)
+..+...+.+...+.|++++.+++|+.+...+++ ....|.+.+..+|+. .++.+|.||.|+|.-.
T Consensus 227 d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p 293 (478)
T 3dk9_A 227 DSMISTNCTEELENAGVEVLKFSQVKEVKKTLSG-LEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVP 293 (478)
T ss_dssp CHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSS-EEEEEEECCTTSCCEEEEEEEESEEEECSCEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCC-cEEEEEEccCCCCcccceEEEcCEEEEeecccc
Confidence 4456667777788899999999999999876543 233455543222332 4799999999999754
No 131
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=89.25 E-value=0.44 Score=45.11 Aligned_cols=59 Identities=17% Similarity=0.031 Sum_probs=44.8
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+++..+...+.+.+.+.|++++. ++|+++..+++ . +.|.+. +|+ ++.+|.||+|+|.+.
T Consensus 56 ~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~--~-~~v~~~---~g~--~~~~~~vv~AtG~~~ 114 (311)
T 2q0l_A 56 VSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDS--H-FVILAE---DGK--TFEAKSVIIATGGSP 114 (311)
T ss_dssp BCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETT--E-EEEEET---TSC--EEEEEEEEECCCEEE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCC--E-EEEEEc---CCC--EEECCEEEECCCCCC
Confidence 56677888888888889999987 78999987653 2 334442 344 699999999999764
No 132
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=89.23 E-value=0.81 Score=43.08 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=41.3
Q ss_pred HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 81 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 81 ~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.+.|++++.+++|+++..++ + ++.+|.+. ..+|+..++.+|.||.|+|.-.
T Consensus 194 ~~~gv~~~~~~~v~~i~~~~-~-~~~~v~~~-~~~g~~~~~~~D~vv~a~G~~p 244 (315)
T 3r9u_A 194 KNEKIELITSASVDEVYGDK-M-GVAGVKVK-LKDGSIRDLNVPGIFTFVGLNV 244 (315)
T ss_dssp HCTTEEEECSCEEEEEEEET-T-EEEEEEEE-CTTSCEEEECCSCEEECSCEEE
T ss_pred hcCCeEEEeCcEEEEEEcCC-C-cEEEEEEE-cCCCCeEEeecCeEEEEEcCCC
Confidence 47899999999999998765 3 77888887 2357666899999999999753
No 133
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=89.06 E-value=0.96 Score=42.93 Aligned_cols=63 Identities=11% Similarity=-0.036 Sum_probs=46.1
Q ss_pred HHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhc
Q 012358 77 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLAD 142 (465)
Q Consensus 77 ~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g 142 (465)
.+.+.+.|++++.+++|..+..++ .+.+|.+.+..+|+..++.+|.||.|+|.-.. .+.+..+
T Consensus 196 ~~~l~~~gv~~~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~ 259 (332)
T 3lzw_A 196 VENLHASKVNVLTPFVPAELIGED---KIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWG 259 (332)
T ss_dssp HHHHHHSSCEEETTEEEEEEECSS---SCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSS
T ss_pred HHHHhcCCeEEEeCceeeEEecCC---ceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcC
Confidence 344678999999999999997653 34678887755566668999999999997542 3444333
No 134
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=88.97 E-value=0.21 Score=52.50 Aligned_cols=69 Identities=20% Similarity=0.189 Sum_probs=51.5
Q ss_pred HHHHHHH-HhCCCEEEcceeEEEEEEc----CCCCeEEEEEEEECCCC-cEEEEEc-cEEEEccCCC-hHHHhhhhcCC
Q 012358 74 VGLALTA-ALAGAAVLNHAEVISLIKD----EASNRIIGARIRNNLSG-KEFDTYA-KVVVNAAGPF-CDSVRKLADQN 144 (465)
Q Consensus 74 ~~l~~~A-~~~Ga~i~~~t~V~~i~~~----~~g~~v~gV~~~d~~tg-~~~~i~a-~~VVnAaG~w-a~~l~~~~g~~ 144 (465)
.+++..+ .+.+.+|+.++.|+.|..+ +++ +++||++.+. .| ...+|+| +-||+|||+. +++|+..-|+-
T Consensus 211 ~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~-rA~GVe~~~~-~g~~~~~v~A~kEVILsAGai~SPqlL~lSGIG 287 (566)
T 3fim_B 211 TAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLP-AFRCVEYAEQ-EGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIG 287 (566)
T ss_dssp HHTHHHHTTCTTEEEESSCEEEEEECCEEETTEE-ECCEEEEESS-TTSCCEEEEEEEEEEECCHHHHHHHHHHHTTEE
T ss_pred HHHhhhhccCCCeEEECCCEEEEEEeecCCCCCC-EEEEEEEEEC-CCceEEEEEeeeEEEEecCCcCChHHHHhcCCC
Confidence 3455544 4568999999999999876 313 7889998752 24 5678999 7799999986 78888776653
No 135
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=88.95 E-value=0.58 Score=44.48 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=46.6
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+.+..+...+.+.+.+.|++++.+++|+++...++ ..+.|.+. +| ++.+|.||+|+|.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~v~~~---~g---~~~~d~vVlAtG~~ 122 (332)
T 3lzw_A 64 IRAQELINNLKEQMAKFDQTICLEQAVESVEKQAD--GVFKLVTN---EE---THYSKTVIITAGNG 122 (332)
T ss_dssp EEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTT--SCEEEEES---SE---EEEEEEEEECCTTS
T ss_pred CCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCC--CcEEEEEC---CC---EEEeCEEEECCCCC
Confidence 45677888888888889999999999999988654 23556653 23 49999999999994
No 136
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=88.86 E-value=0.56 Score=47.92 Aligned_cols=70 Identities=9% Similarity=0.069 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HH-hhhhcC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SV-RKLADQ 143 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l-~~~~g~ 143 (465)
+..+...+.+...+.|++++.+++|+++..++++ .+..|.+. +|+ .++.||.||.|+|...+ .+ ++.+|.
T Consensus 225 d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~~v~~~---~G~-~~i~~D~vv~a~G~~p~~~l~l~~~gl 296 (479)
T 2hqm_A 225 DECIQNTITDHYVKEGINVHKLSKIVKVEKNVET-DKLKIHMN---DSK-SIDDVDELIWTIGRKSHLGMGSENVGI 296 (479)
T ss_dssp CHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-C-CCEEEEET---TSC-EEEEESEEEECSCEEECCCSSGGGGTC
T ss_pred CHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCC-cEEEEEEC---CCc-EEEEcCEEEECCCCCCccccChhhcCc
Confidence 3456667777778899999999999999875432 24456553 352 37999999999996543 23 344444
No 137
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=88.86 E-value=1.1 Score=44.27 Aligned_cols=61 Identities=21% Similarity=0.175 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhc
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 142 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g 142 (465)
.+...|.+.+ .|++|+.+++|+++..+++ + +.|++. +|+ ++.||.||.|.|.++. +++.++
T Consensus 100 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~--~-v~v~~~---~g~--~~~ad~vV~AdG~~S~-vr~~~~ 160 (397)
T 2vou_A 100 SIYGGLYELF--GPERYHTSKCLVGLSQDSE--T-VQMRFS---DGT--KAEANWVIGADGGASV-VRKRLL 160 (397)
T ss_dssp HHHHHHHHHH--CSTTEETTCCEEEEEECSS--C-EEEEET---TSC--EEEESEEEECCCTTCH-HHHHHH
T ss_pred HHHHHHHHhC--CCcEEEcCCEEEEEEecCC--E-EEEEEC---CCC--EEECCEEEECCCcchh-HHHHhc
Confidence 4444444433 6999999999999988764 3 335543 354 6999999999999974 556555
No 138
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=88.77 E-value=1.1 Score=45.40 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+..+...+.+...+.|++++.+++|+++..+++ . +.|.+.+..+|+..++.+|.||.|+|...+
T Consensus 217 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~--~-~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~ 280 (470)
T 1dxl_A 217 DAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGD--G-VKLTVEPSAGGEQTIIEADVVLVSAGRTPF 280 (470)
T ss_dssp CHHHHHHHHHHHHHSSCCEECSEEEEEEECSSS--S-EEEEEEESSSCCCEEEEESEEECCCCEEEC
T ss_pred cHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCC--e-EEEEEEecCCCcceEEECCEEEECCCCCcC
Confidence 445667777778899999999999999986543 3 345554321243347999999999998754
No 139
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=88.74 E-value=0.4 Score=48.54 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
+..+...+.+...++|++++.+++|+++..+++ . +.+.+. +|+ ++.+|.||+|+|.+...
T Consensus 207 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~--~-v~v~~~---~g~--~i~~D~vv~A~G~~p~~ 266 (455)
T 2yqu_A 207 DLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAK--G-ARVELE---GGE--VLEADRVLVAVGRRPYT 266 (455)
T ss_dssp CHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT--E-EEEEET---TSC--EEEESEEEECSCEEECC
T ss_pred CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC--E-EEEEEC---CCe--EEEcCEEEECcCCCcCC
Confidence 445677777888889999999999999987653 2 234432 344 69999999999998653
No 140
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=88.64 E-value=0.67 Score=43.77 Aligned_cols=58 Identities=12% Similarity=0.008 Sum_probs=45.2
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+.+..+...+.+.+.+.|++++. ++|+++..+++ . +.|.+. +|. ++.+|.||+|+|.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~--~-~~v~~~---~g~--~~~~d~lvlAtG~~ 124 (323)
T 3f8d_A 67 IQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRGD--E-FVVKTK---RKG--EFKADSVILGIGVK 124 (323)
T ss_dssp EEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC----C-EEEEES---SSC--EEEEEEEEECCCCE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecCC--E-EEEEEC---CCC--EEEcCEEEECcCCC
Confidence 56778888888889999999998 89999987653 2 445543 244 79999999999998
No 141
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=88.52 E-value=0.25 Score=50.35 Aligned_cols=56 Identities=11% Similarity=-0.077 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhC--------CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALA--------GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~--------Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.++.+|++..... |++|+.+++|++|...++ ++. |++. +|+ ++.||.||.|++++.
T Consensus 207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~--~v~-v~~~---~g~--~~~ad~vI~a~~~~~ 270 (472)
T 1b37_A 207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPG--GVT-VKTE---DNS--VYSADYVMVSASLGV 270 (472)
T ss_dssp HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSS--CEE-EEET---TSC--EEEESEEEECSCHHH
T ss_pred HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCC--cEE-EEEC---CCC--EEEcCEEEEecCHHH
Confidence 5666676665544 789999999999998764 433 5543 354 689999999999864
No 142
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=88.44 E-value=0.45 Score=49.68 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=45.3
Q ss_pred chhHHHHHHHHHHHhCCC--EEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 68 NDSRLNVGLALTAALAGA--AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga--~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+...+...+...+.+.|. .+..+++|+++..++++ ..|.|++. +|+ ++.||.||+|+|.++.
T Consensus 85 ~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~-~~w~V~~~---~G~--~~~ad~lV~AtG~~s~ 148 (545)
T 3uox_A 85 SQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVEND-RLWEVTLD---NEE--VVTCRFLISATGPLSA 148 (545)
T ss_dssp BHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGG-TEEEEEET---TTE--EEEEEEEEECCCSCBC
T ss_pred CHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCC-CEEEEEEC---CCC--EEEeCEEEECcCCCCC
Confidence 445555556666777787 78889999999875532 45667664 364 6999999999998864
No 143
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=88.41 E-value=0.33 Score=48.15 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=44.1
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhc
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 142 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g 142 (465)
++...+...|.+.+. +++|+.+++|+++..+++ . +.|++. +|+ +++||.||.|.|.++. +++.++
T Consensus 125 i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~--~-v~v~~~---~g~--~~~ad~vV~AdG~~S~-vR~~l~ 189 (398)
T 2xdo_A 125 INRNDLRAILLNSLE--NDTVIWDRKLVMLEPGKK--K-WTLTFE---NKP--SETADLVILANGGMSK-VRKFVT 189 (398)
T ss_dssp ECHHHHHHHHHHTSC--TTSEEESCCEEEEEECSS--S-EEEEET---TSC--CEEESEEEECSCTTCS-CCTTTC
T ss_pred ECHHHHHHHHHhhcC--CCEEEECCEEEEEEECCC--E-EEEEEC---CCc--EEecCEEEECCCcchh-HHhhcc
Confidence 344456666665443 368889999999988764 3 335543 354 6999999999999974 444444
No 144
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=88.41 E-value=0.62 Score=44.57 Aligned_cols=60 Identities=20% Similarity=0.132 Sum_probs=45.8
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+++..+...+.+.+.+.|++++.+++|+.+..+++ .+.|.+. +|+ ++.+|.||+|+|..+
T Consensus 62 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~---~~~v~~~---~g~--~~~~~~lv~AtG~~~ 121 (335)
T 2zbw_A 62 VYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGD---LFKVTTS---QGN--AYTAKAVIIAAGVGA 121 (335)
T ss_dssp EEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEETT---EEEEEET---TSC--EEEEEEEEECCTTSE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECCC---EEEEEEC---CCC--EEEeCEEEECCCCCC
Confidence 56677888888888888999998999999987652 2344432 343 699999999999863
No 145
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=88.38 E-value=1.3 Score=44.81 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+..+...+.+...+.|++++.+++|+++..+++ . +.|.+.+..+|+..++.+|.||+|+|....
T Consensus 209 ~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~-~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~ 272 (464)
T 2eq6_A 209 DPETAALLRRALEKEGIRVRTKTKAVGYEKKKD--G-LHVRLEPAEGGEGEEVVVDKVLVAVGRKPR 272 (464)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSEEEEEEEEETT--E-EEEEEEETTCCSCEEEEESEEEECSCEEES
T ss_pred CHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCC--E-EEEEEeecCCCceeEEEcCEEEECCCcccC
Confidence 345666777778889999999999999987653 3 345554211254447999999999997653
No 146
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=88.25 E-value=0.25 Score=50.86 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=45.4
Q ss_pred HHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcCC
Q 012358 78 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 144 (465)
Q Consensus 78 ~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~~ 144 (465)
+.+.++|++|+.+++|+++..++ ++.+|.+. +|+ ++.||.||+|+|.+.+ ++++.+|.+
T Consensus 265 ~~l~~~GV~v~~~~~v~~i~~~~---~v~~v~~~---~g~--~i~aD~Vv~a~G~~p~~~l~~~~g~~ 324 (493)
T 1y56_A 265 QELERWGIDYVHIPNVKRVEGNE---KVERVIDM---NNH--EYKVDALIFADGRRPDINPITQAGGK 324 (493)
T ss_dssp HHHHHHTCEEEECSSEEEEECSS---SCCEEEET---TCC--EEECSEEEECCCEEECCHHHHHTTCC
T ss_pred HHHHhCCcEEEeCCeeEEEecCC---ceEEEEeC---CCe--EEEeCEEEECCCcCcCchHHHhcCCC
Confidence 56678899999999999997543 45556543 354 7999999999999966 477777764
No 147
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=88.18 E-value=0.7 Score=48.03 Aligned_cols=60 Identities=17% Similarity=0.173 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCC--CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 71 RLNVGLALTAALAG--AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 71 rl~~~l~~~A~~~G--a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
.+...+...+.+.| ..++.+++|+++..++++ ..|.|++. +|+ ++.||.||+|+|.|+..
T Consensus 95 ~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~-~~w~V~~~---~G~--~~~ad~vV~AtG~~s~p 156 (542)
T 1w4x_A 95 EILRYINFVADKFDLRSGITFHTTVTAAAFDEAT-NTWTVDTN---HGD--RIRARYLIMASGQLSVP 156 (542)
T ss_dssp HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTT-TEEEEEET---TCC--EEEEEEEEECCCSCCCC
T ss_pred HHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCC-CeEEEEEC---CCC--EEEeCEEEECcCCCCCC
Confidence 34433444455655 678899999999876532 34666653 364 69999999999998643
No 148
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=88.14 E-value=0.64 Score=43.94 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=45.9
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCC-CCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA-SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~-g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.++..+...+.+.+.+.|++++.+++|+.+..+.+ + ..+.|.+. +|+ ++.++.||+|+|.+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~-~~~~v~~~---~g~--~~~~~~lv~AtG~~~ 115 (310)
T 1fl2_A 53 TEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEG-GLHQIETA---SGA--VLKARSIIVATGAKW 115 (310)
T ss_dssp EEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTT-CCEEEEET---TSC--EEEEEEEEECCCEEE
T ss_pred CCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCC-ceEEEEEC---CCC--EEEeCEEEECcCCCc
Confidence 45567777777788889999999999999975421 1 23556553 354 689999999999864
No 149
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=88.12 E-value=0.66 Score=46.93 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH--H-hhhhcCC
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS--V-RKLADQN 144 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~--l-~~~~g~~ 144 (465)
..+...+.+...+.|++++.+++|+++..+++ ..+.|.+. +|+ ++.+|.||+|+|..... + .+.+|..
T Consensus 208 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~~~~v~~~---~g~--~i~~D~vv~a~G~~p~~~~l~~~~~gl~ 278 (450)
T 1ges_A 208 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTD--GSLTLELE---DGR--SETVDCLIWAIGREPANDNINLEAAGVK 278 (450)
T ss_dssp HHHHHHHHHHHHHHSCEEECSCCEEEEEECTT--SCEEEEET---TSC--EEEESEEEECSCEEESCTTSCHHHHTCC
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC--cEEEEEEC---CCc--EEEcCEEEECCCCCcCCCCCCchhcCce
Confidence 45667777778889999999999999987543 22345553 354 69999999999986543 3 3444543
No 150
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=88.09 E-value=1.3 Score=45.55 Aligned_cols=58 Identities=22% Similarity=0.191 Sum_probs=43.9
Q ss_pred HHHH-HHHhCCCEEEcceeEEEEEEcCCCC-----eEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 75 GLAL-TAALAGAAVLNHAEVISLIKDEASN-----RIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 75 ~l~~-~A~~~Ga~i~~~t~V~~i~~~~~g~-----~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
.+++ .|.+.+-.|..+++|+++.....+. ..|.|++.+..+|+..++.|+.||+|+|.
T Consensus 149 ~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~ 212 (501)
T 4b63_A 149 DYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGG 212 (501)
T ss_dssp HHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred HHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCC
Confidence 3444 4456677789999999998643210 25889998877888888999999999994
No 151
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=88.07 E-value=0.79 Score=46.34 Aligned_cols=57 Identities=7% Similarity=-0.022 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+..+...+.+...+.|++++.+++|+++...++ ++ .|.+. .| ++.||.||.|+|...
T Consensus 188 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~v-~v~~~---~g---~i~aD~Vv~A~G~~p 244 (452)
T 3oc4_A 188 DKEMVAEVQKSLEKQAVIFHFEETVLGIEETAN--GI-VLETS---EQ---EISCDSGIFALNLHP 244 (452)
T ss_dssp CHHHHHHHHHHHHTTTEEEEETCCEEEEEECSS--CE-EEEES---SC---EEEESEEEECSCCBC
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCC--eE-EEEEC---CC---EEEeCEEEECcCCCC
Confidence 456777788888899999999999999986553 44 55542 23 699999999999864
No 152
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=87.92 E-value=0.99 Score=45.57 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+..+...+.+...+.|++++.+++|+++..++ + ++..|.+ +|+ ++.||.||.|+|....
T Consensus 190 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~-~v~~v~~----~g~--~i~~D~vv~a~G~~p~ 248 (452)
T 2cdu_A 190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEVD-D-EIITKTL----DGK--EIKSDIAILCIGFRPN 248 (452)
T ss_dssp CHHHHHHHHHHHHHTTCEEEESSCEEEEEEET-T-EEEEEET----TSC--EEEESEEEECCCEEEC
T ss_pred hhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCC-C-eEEEEEe----CCC--EEECCEEEECcCCCCC
Confidence 34567777888889999999999999998644 3 5555543 354 6999999999997643
No 153
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=87.84 E-value=1.3 Score=45.05 Aligned_cols=66 Identities=12% Similarity=0.081 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQ 143 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~ 143 (465)
+..+...+.+.+.+.|++++.+++|+++..+ + +++.|.+ ++. ++.||.||+|+|.... .+.+..|.
T Consensus 226 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~-~v~~v~~----~~~--~i~~D~vi~a~G~~p~~~~l~~~g~ 292 (480)
T 3cgb_A 226 DGDMAEYIYKEADKHHIEILTNENVKAFKGN--E-RVEAVET----DKG--TYKADLVLVSVGVKPNTDFLEGTNI 292 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEES--S-BEEEEEE----TTE--EEECSEEEECSCEEESCGGGTTSCC
T ss_pred CHHHHHHHHHHHHHcCcEEEcCCEEEEEEcC--C-cEEEEEE----CCC--EEEcCEEEECcCCCcChHHHHhCCc
Confidence 4556777888888999999999999999764 2 5555554 232 7999999999998754 35444443
No 154
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=87.55 E-value=0.29 Score=40.73 Aligned_cols=54 Identities=6% Similarity=-0.146 Sum_probs=42.4
Q ss_pred ccCCCCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHH-----HhhhhHHHHH
Q 012358 367 NEGLGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDA-----AGRALPRIIE 424 (465)
Q Consensus 367 ~~~~~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~-----~~~~~~~v~~ 424 (465)
+++....||.|..+|+.+|+.|++ ++|.| | |.+.|++|-...|. |.-|.+.|.+
T Consensus 67 ~~~~~~~VC~C~gVT~~~I~eAv~-~Ga~t--~-I~~~tgag~~CgC~~~NP~G~CC~~~i~~ 125 (130)
T 2hu9_A 67 EREEPKPVCYCNRVTEKMLLEAAE-KFGKE--K-AVEITGAGKGKWCVVTNPSGRCCHWHLER 125 (130)
T ss_dssp CSSSCCEEETTTTEEHHHHHHHHH-HHCHH--H-HHHHHCTTCCSCHHHHSTTSSCTHHHHHH
T ss_pred CCCCCCEEEEccCCcHHHHHHHHH-cCCHH--H-HHHHhccCCCCCCCccCCCCCccchhHHh
Confidence 444457899999999999999998 58888 7 58899999855566 5567766544
No 155
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=87.31 E-value=1.5 Score=41.74 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=41.0
Q ss_pred HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 81 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 81 ~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.+.|++++.+++|+.+..++++.++.+|.+.+..+|+..++.+|.||.|+|.-.+
T Consensus 206 ~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 260 (333)
T 1vdc_A 206 SNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPA 260 (333)
T ss_dssp TCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEES
T ss_pred hCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccc
Confidence 4689999999999999875421135668877543565568999999999997543
No 156
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=87.23 E-value=1.9 Score=43.52 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+..+...+.+...+.|++++.+++|+++..+++ . +.|.+.+ +|+..++.+|.||.|+|....
T Consensus 210 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~--~-~~v~~~~--~g~~~~~~~D~vv~a~G~~p~ 271 (455)
T 1ebd_A 210 EKQMAAIIKKRLKKKGVEVVTNALAKGAEERED--G-VTVTYEA--NGETKTIDADYVLVTVGRRPN 271 (455)
T ss_dssp CHHHHHHHHHHHHHTTCEEEESEEEEEEEEETT--E-EEEEEEE--TTEEEEEEESEEEECSCEEES
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC--e-EEEEEEe--CCceeEEEcCEEEECcCCCcc
Confidence 345666677778889999999999999987653 3 3355442 344447999999999998653
No 157
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=87.18 E-value=0.73 Score=47.45 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=47.0
Q ss_pred hCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC-hHHHhhhhcC
Q 012358 82 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKLADQ 143 (465)
Q Consensus 82 ~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w-a~~l~~~~g~ 143 (465)
+.+.+++.++.|+.+..+++ +++||.+.+ .+....+.|+.||+|||+. +.+|+..-|+
T Consensus 223 r~nl~v~~~~~v~~i~~~~~--~a~gv~~~~--~~~~~~~~a~~VILsAGai~SP~LLl~SGi 281 (526)
T 3t37_A 223 RKNLTILTGSRVRRLKLEGN--QVRSLEVVG--RQGSAEVFADQIVLCAGALESPALLMRSGI 281 (526)
T ss_dssp CTTEEEECSCEEEEEEEETT--EEEEEEEEE--TTEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred CCCeEEEeCCEEEEEEecCC--eEEEEEEEe--cCceEEEeecceEEcccccCCcchhhhccC
Confidence 45689999999999998764 899999886 4556689999999999986 7788765554
No 158
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=87.10 E-value=0.82 Score=44.10 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
.++..+++. .|++|+.+++|++|..+++ + +.|.+. +|+ ++.+|.||+|+.+
T Consensus 113 ~l~~~l~~~---~g~~i~~~~~V~~i~~~~~--~-~~v~~~---~g~--~~~ad~vV~A~p~ 163 (342)
T 3qj4_A 113 SIIKHYLKE---SGAEVYFRHRVTQINLRDD--K-WEVSKQ---TGS--PEQFDLIVLTMPV 163 (342)
T ss_dssp HHHHHHHHH---HTCEEESSCCEEEEEECSS--S-EEEEES---SSC--CEEESEEEECSCH
T ss_pred HHHHHHHHh---cCCEEEeCCEEEEEEEcCC--E-EEEEEC---CCC--EEEcCEEEECCCH
Confidence 344555443 3999999999999998764 3 445543 354 4799999999975
No 159
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=86.74 E-value=1.8 Score=43.71 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+...++|++++.+++|+++..+++ . ..+.+.+ +|+..++.+|.||.|+|...+
T Consensus 212 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~--~-~~v~~~~--~g~~~~~~~D~vv~a~G~~p~ 272 (464)
T 2a8x_A 212 ADVSKEIEKQFKKLGVTILTATKVESIADGGS--Q-VTVTVTK--DGVAQELKAEKVLQAIGFAPN 272 (464)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCEEEEEEECSS--C-EEEEEES--SSCEEEEEESEEEECSCEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCC--e-EEEEEEc--CCceEEEEcCEEEECCCCCcc
Confidence 45666677777889999999999999987653 3 3355441 354457999999999997643
No 160
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=86.62 E-value=1.3 Score=44.98 Aligned_cols=59 Identities=19% Similarity=0.081 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+...+.|++++.+++|+++..+++ . ..|.+. +|+. ++.+|.||+|+|....
T Consensus 207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~--~-~~v~~~---~G~~-~i~~D~vv~a~G~~p~ 265 (463)
T 2r9z_A 207 PLLSATLAENMHAQGIETHLEFAVAALERDAQ--G-TTLVAQ---DGTR-LEGFDSVIWAVGRAPN 265 (463)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCEEEEEEETT--E-EEEEET---TCCE-EEEESEEEECSCEEES
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC--e-EEEEEe---CCcE-EEEcCEEEECCCCCcC
Confidence 35666777778899999999999999987653 3 345543 3543 6999999999998754
No 161
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=86.45 E-value=1 Score=44.84 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 144 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~~ 144 (465)
|..+...+.+...++|++++.+++|+++. + + .|.+. +|+ ++.||.||.|+|...+ .+.+..|..
T Consensus 186 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~--~-~----~v~~~---~g~--~i~~D~vi~a~G~~p~~~l~~~~gl~ 250 (408)
T 2gqw_A 186 PATLADFVARYHAAQGVDLRFERSVTGSV--D-G----VVLLD---DGT--RIAADMVVVGIGVLANDALARAAGLA 250 (408)
T ss_dssp CHHHHHHHHHHHHHTTCEEEESCCEEEEE--T-T----EEEET---TSC--EEECSEEEECSCEEECCHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHcCcEEEeCCEEEEEE--C-C----EEEEC---CCC--EEEcCEEEECcCCCccHHHHHhCCCC
Confidence 45677777788889999999999999997 3 2 35553 354 6999999999998754 566666654
No 162
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=86.43 E-value=1.7 Score=44.88 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=42.3
Q ss_pred HHHh-CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 79 TAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 79 ~A~~-~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
...+ .|++++.++.|+.+..++ + ++.+|.+.+..+|+..++.+|.||.|+|.-
T Consensus 399 ~l~~~~gV~v~~~~~v~~i~~~~-~-~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 452 (521)
T 1hyu_A 399 KVRSLKNVDIILNAQTTEVKGDG-S-KVVGLEYRDRVSGDIHSVALAGIFVQIGLL 452 (521)
T ss_dssp HHTTCTTEEEECSEEEEEEEECS-S-SEEEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred HHhcCCCcEEEeCCEEEEEEcCC-C-cEEEEEEEeCCCCceEEEEcCEEEECcCCC
Confidence 3344 599999999999998754 3 677888887556776789999999999953
No 163
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=86.43 E-value=1.5 Score=44.12 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCCEEEcceeEEEEEEcCC-CCeEEE--EEEEECCCCcEEEEEccEEEEccCC
Q 012358 72 LNVGLALTAALAGAAVLNHAEVISLIKDEA-SNRIIG--ARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 72 l~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~-g~~v~g--V~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
+...+...+.+.|+.++.+++|+++..+++ + +.|. |.+.+. +|+..++.+|.||+|+|.
T Consensus 129 ~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~-~~~~~~V~~~~g-~g~~~~~~~d~lVlAtG~ 190 (463)
T 3s5w_A 129 FNDYLRWVASHFQEQSRYGEEVLRIEPMLSAG-QVEALRVISRNA-DGEELVRTTRALVVSPGG 190 (463)
T ss_dssp HHHHHHHHHTTCTTTEEESEEEEEEEEEEETT-EEEEEEEEEEET-TSCEEEEEESEEEECCCC
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEecCCC-ceEEEEEEEecC-CCceEEEEeCEEEECCCC
Confidence 434444455667999999999999987521 2 5554 444442 244557999999999996
No 164
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=86.36 E-value=0.64 Score=46.33 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=35.7
Q ss_pred HHHHHH-HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 75 GLALTA-ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 75 ~l~~~A-~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.+++.. .+.| +|+.+++|++|..+++ ++ .|.+. +|+ ++.||.||+|+|+..
T Consensus 208 ~l~~~~~~~~g-~i~~~~~V~~i~~~~~--~v-~v~~~---~g~--~~~ad~vi~a~~~~~ 259 (431)
T 3k7m_X 208 DLVDAMSQEIP-EIRLQTVVTGIDQSGD--VV-NVTVK---DGH--AFQAHSVIVATPMNT 259 (431)
T ss_dssp HHHHHHHTTCS-CEESSCCEEEEECSSS--SE-EEEET---TSC--CEEEEEEEECSCGGG
T ss_pred HHHHHHHhhCC-ceEeCCEEEEEEEcCC--eE-EEEEC---CCC--EEEeCEEEEecCcch
Confidence 344443 3456 9999999999987654 33 34443 354 599999999999753
No 165
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=86.20 E-value=1.1 Score=42.58 Aligned_cols=60 Identities=22% Similarity=0.066 Sum_probs=44.6
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEc--CCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKD--EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~--~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+++..+...+.+.+.+.|++++. ++|+++..+ ++ ..+.|.+. +|+ ++.+|.||+|+|.+.
T Consensus 62 ~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~--~~~~v~~~---~g~--~~~~~~vv~AtG~~~ 123 (325)
T 2q7v_A 62 IAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSH--PYPFTVRG---YNG--EYRAKAVILATGADP 123 (325)
T ss_dssp BCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSS--SCCEEEEE---SSC--EEEEEEEEECCCEEE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCC--ceEEEEEC---CCC--EEEeCEEEECcCCCc
Confidence 45667777788888899999986 689999876 42 22345554 354 699999999999864
No 166
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=86.10 E-value=2.1 Score=43.38 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+..+...+.+...+.|++++.+++|+++..+++ . ..|.+.+. +| ..++.+|.||+|+|.-
T Consensus 220 ~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~--~-~~v~~~~~-~g-~~~~~~D~vi~a~G~~ 279 (476)
T 3lad_A 220 DEQVAKEAQKILTKQGLKILLGARVTGTEVKNK--Q-VTVKFVDA-EG-EKSQAFDKLIVAVGRR 279 (476)
T ss_dssp CHHHHHHHHHHHHHTTEEEEETCEEEEEEECSS--C-EEEEEESS-SE-EEEEEESEEEECSCEE
T ss_pred CHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCC--E-EEEEEEeC-CC-cEEEECCEEEEeeCCc
Confidence 445677777778899999999999999987653 3 34555531 12 2479999999999975
No 167
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=85.94 E-value=1.2 Score=47.67 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+.+.++|++|+.+++|++|..+ ++.+....+++..++.||.||+|+|...+
T Consensus 567 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~-------~~~v~~~~~~~~~~i~aD~VV~A~G~~p~ 625 (690)
T 3k30_A 567 TFEVNRIQRRLIENGVARVTDHAVVAVGAG-------GVTVRDTYASIERELECDAVVMVTARLPR 625 (690)
T ss_dssp GTCHHHHHHHHHHTTCEEEESEEEEEEETT-------EEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred chhHHHHHHHHHHCCCEEEcCcEEEEEECC-------eEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence 445667777888999999999999999642 13333323455557999999999998643
No 168
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=85.31 E-value=0.9 Score=47.64 Aligned_cols=66 Identities=18% Similarity=0.120 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 144 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~~ 144 (465)
+..+...+.+...+.|++++.+++|+.+..+++ +|.+. +|+ ++.||.||.|+|.+.+ .+.+.+|..
T Consensus 227 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-----~v~~~---~g~--~i~~D~Vi~a~G~~p~~~~l~~~g~~ 293 (588)
T 3ics_A 227 DYEMAAYVHEHMKNHDVELVFEDGVDALEENGA-----VVRLK---SGS--VIQTDMLILAIGVQPESSLAKGAGLA 293 (588)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGT-----EEEET---TSC--EEECSEEEECSCEEECCHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHcCCEEEECCeEEEEecCCC-----EEEEC---CCC--EEEcCEEEEccCCCCChHHHHhcCce
Confidence 356777788888899999999999999976532 35553 354 6999999999998754 355555554
No 169
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=85.29 E-value=0.81 Score=47.07 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.++.++++. .|++|+.+++|++|..+++ ++. |.+. +|+ ++.||.||+|++++.
T Consensus 216 ~l~~~l~~~---lg~~i~~~~~V~~i~~~~~--~v~-v~~~---~g~--~~~ad~VI~a~p~~~ 268 (520)
T 1s3e_A 216 QVSERIMDL---LGDRVKLERPVIYIDQTRE--NVL-VETL---NHE--MYEAKYVISAIPPTL 268 (520)
T ss_dssp HHHHHHHHH---HGGGEESSCCEEEEECSSS--SEE-EEET---TSC--EEEESEEEECSCGGG
T ss_pred HHHHHHHHH---cCCcEEcCCeeEEEEECCC--eEE-EEEC---CCe--EEEeCEEEECCCHHH
Confidence 455555543 3889999999999987654 433 5443 354 689999999999985
No 170
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=84.98 E-value=0.87 Score=43.49 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=33.2
Q ss_pred CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 83 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 83 ~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.|++|+.+++|++|..+++ . +.|++. +|+ ....|+.||.|+|+++
T Consensus 118 ~g~~i~~~~~v~~i~~~~~--~-~~v~~~---~g~-~~~~a~~vV~a~g~~~ 162 (336)
T 1yvv_A 118 GDMPVSFSCRITEVFRGEE--H-WNLLDA---EGQ-NHGPFSHVIIATPAPQ 162 (336)
T ss_dssp TTCCEECSCCEEEEEECSS--C-EEEEET---TSC-EEEEESEEEECSCHHH
T ss_pred ccCcEEecCEEEEEEEeCC--E-EEEEeC---CCc-CccccCEEEEcCCHHH
Confidence 3999999999999998764 2 335432 354 2345999999999875
No 171
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=84.95 E-value=1.2 Score=44.70 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.++.++++ ..|++|+.+++|++|..+++ +. |.+.. +|+ ++.||.||+|++++.
T Consensus 216 ~l~~~l~~---~lg~~i~~~~~V~~i~~~~~--~~--v~v~~--~~~--~~~ad~VI~a~p~~~ 268 (453)
T 2yg5_A 216 QVSIRMAE---ALGDDVFLNAPVRTVKWNES--GA--TVLAD--GDI--RVEASRVILAVPPNL 268 (453)
T ss_dssp HHHHHHHH---HHGGGEECSCCEEEEEEETT--EE--EEEET--TTE--EEEEEEEEECSCGGG
T ss_pred HHHHHHHH---hcCCcEEcCCceEEEEEeCC--ce--EEEEE--CCe--EEEcCEEEEcCCHHH
Confidence 35555544 34899999999999988653 31 33332 343 799999999999974
No 172
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=84.90 E-value=1.4 Score=45.13 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..+...+.+...++|++++.+++|+++..++++ ...|.+. +|+. ++.+|.||.|+|.-..
T Consensus 217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~~v~~~---~g~~-~~~~D~vi~a~G~~p~ 276 (500)
T 1onf_A 217 ESVINVLENDMKKNNINIVTFADVVEIKKVSDK--NLSIHLS---DGRI-YEHFDHVIYCVGRSPD 276 (500)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTT--CEEEEET---TSCE-EEEESEEEECCCBCCT
T ss_pred hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCc--eEEEEEC---CCcE-EEECCEEEECCCCCcC
Confidence 456667777888999999999999999875432 2345543 3652 3999999999997644
No 173
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=84.82 E-value=1 Score=46.59 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=46.4
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCC-CCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA-SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~-g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.++..+...+.+.+.+.|++++.+++|+.+..+.+ + ..+.|.+. +|. ++.++.||+|+|.+.
T Consensus 264 ~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~-~~~~V~~~---~g~--~~~~d~vVlAtG~~~ 326 (521)
T 1hyu_A 264 TEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEG-GLHQIETA---SGA--VLKARSIIIATGAKW 326 (521)
T ss_dssp BCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTT-SCEEEEET---TSC--EEEEEEEEECCCEEE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCC-ceEEEEEC---CCC--EEEcCEEEECCCCCc
Confidence 45667888888888899999999999999975321 1 23556553 354 699999999999864
No 174
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=84.03 E-value=1.7 Score=45.01 Aligned_cols=69 Identities=9% Similarity=0.020 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEc------------------CCCCeEEEEEEEECCCCcEEEEEccEEEEcc
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKD------------------EASNRIIGARIRNNLSGKEFDTYAKVVVNAA 130 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~------------------~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAa 130 (465)
+..+...+.+...+.|++++.+++|+++..+ .++ ++ .+.+. +|+ ++.||.||.|+
T Consensus 191 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~---~g~--~i~~D~vi~a~ 263 (565)
T 3ntd_A 191 DREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKG-HL-SLTLS---NGE--LLETDLLIMAI 263 (565)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTC-EE-EEEET---TSC--EEEESEEEECS
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCC-cE-EEEEc---CCC--EEEcCEEEECc
Confidence 3566777777888999999999999999873 222 32 23332 354 79999999999
Q ss_pred CCChH-HHhhhhcCC
Q 012358 131 GPFCD-SVRKLADQN 144 (465)
Q Consensus 131 G~wa~-~l~~~~g~~ 144 (465)
|.+.+ .+.+.+|..
T Consensus 264 G~~p~~~l~~~~g~~ 278 (565)
T 3ntd_A 264 GVRPETQLARDAGLA 278 (565)
T ss_dssp CEEECCHHHHHHTCC
T ss_pred CCccchHHHHhCCcc
Confidence 99865 465655654
No 175
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=83.67 E-value=1.8 Score=40.99 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=45.2
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+.+..+...+.+.+.+.|++++.++ |+++..+++ . +.+.+.+..++ .++.+|.||+|+|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~--~-~~v~~~~~~~~--~~~~~d~vvlAtG~~~ 142 (338)
T 3itj_A 81 LTGSELMDRMREQSTKFGTEIITET-VSKVDLSSK--P-FKLWTEFNEDA--EPVTTDAIILATGASA 142 (338)
T ss_dssp EEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSSS--S-EEEEETTCSSS--CCEEEEEEEECCCEEE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcCC--E-EEEEEEecCCC--cEEEeCEEEECcCCCc
Confidence 5667788888888999999999988 999987653 2 33443211123 3689999999999853
No 176
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=82.69 E-value=2.5 Score=39.95 Aligned_cols=58 Identities=22% Similarity=0.102 Sum_probs=43.6
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+++..+...+.+.+.+.|++++. ++|+++..+++ . +.|.+ ++. ++.+|.||+|+|.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~--~-~~v~~----~~~--~~~~~~li~AtG~~~ 126 (319)
T 3cty_A 69 IVGSELAKLFADHAANYAKIREG-VEVRSIKKTQG--G-FDIET----NDD--TYHAKYVIITTGTTH 126 (319)
T ss_dssp BCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEETT--E-EEEEE----SSS--EEEEEEEEECCCEEE
T ss_pred cCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEeCC--E-EEEEE----CCC--EEEeCEEEECCCCCc
Confidence 55667777788888889999987 78999987653 2 33443 243 699999999999864
No 177
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=81.18 E-value=2.6 Score=42.75 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.++.+|++...+ ++|+.+++|++|...++ ++. |.+.+ .++..++.||.||+|+.++.
T Consensus 240 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~--~v~-v~~~~--g~~~~~~~ad~vI~a~p~~~ 296 (489)
T 2jae_A 240 RIYYAFQDRIGT--DNIVFGAEVTSMKNVSE--GVT-VEYTA--GGSKKSITADYAICTIPPHL 296 (489)
T ss_dssp HHHHHHHHHHCG--GGEETTCEEEEEEEETT--EEE-EEEEE--TTEEEEEEESEEEECSCHHH
T ss_pred HHHHHHHHhcCC--CeEEECCEEEEEEEcCC--eEE-EEEec--CCeEEEEECCEEEECCCHHH
Confidence 466666664421 78999999999998764 433 55554 12223799999999998863
No 178
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=80.89 E-value=2.4 Score=42.58 Aligned_cols=58 Identities=17% Similarity=0.082 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+..+...+.+.+.+.|++++.+++|+++..+ + +++.|.+ +|. ++.||.||+|+|....
T Consensus 190 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~-~v~~v~~----~~~--~i~~d~vi~a~G~~p~ 247 (447)
T 1nhp_A 190 DKEFTDVLTEEMEANNITIATGETVERYEGD--G-RVQKVVT----DKN--AYDADLVVVAVGVRPN 247 (447)
T ss_dssp CHHHHHHHHHHHHTTTEEEEESCCEEEEECS--S-BCCEEEE----SSC--EEECSEEEECSCEEES
T ss_pred CHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc--C-cEEEEEE----CCC--EEECCEEEECcCCCCC
Confidence 3456777778888899999999999999764 2 4545554 243 6999999999997654
No 179
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=80.89 E-value=0.73 Score=45.71 Aligned_cols=56 Identities=11% Similarity=0.041 Sum_probs=40.2
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
.++..+.....+...++|++++.+++|+++..++. .|.+. +|+ ++.+|.||+|+|.
T Consensus 59 ~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id~~~~-----~v~~~---~g~--~~~yd~lvlAtG~ 114 (385)
T 3klj_A 59 KSIDDILIKKNDWYEKNNIKVITSEFATSIDPNNK-----LVTLK---SGE--KIKYEKLIIASGS 114 (385)
T ss_dssp CCGGGTBSSCHHHHHHTTCEEECSCCEEEEETTTT-----EEEET---TSC--EEECSEEEECCCE
T ss_pred CCHHHccCCCHHHHHHCCCEEEeCCEEEEEECCCC-----EEEEC---CCC--EEECCEEEEecCC
Confidence 34444444444555678999999999999987542 35553 354 6999999999996
No 180
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=80.50 E-value=1.8 Score=40.23 Aligned_cols=98 Identities=11% Similarity=0.008 Sum_probs=61.5
Q ss_pred HHHHHHHHhhCCCCCCCceeeCHHHHHHhCCCccccccccCceEEEEecC-eeEchhHHHHHHHHHHHhC-CCEEEccee
Q 012358 15 VGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD-GQMNDSRLNVGLALTAALA-GAAVLNHAE 92 (465)
Q Consensus 15 ~gl~lyd~l~~~~~~~~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~d-g~vdp~rl~~~l~~~A~~~-Ga~i~~~t~ 92 (465)
+||..--.|+.. + .++.++++......+|.... . ++. ...++..+...+.+.+.+. |+++++ ++
T Consensus 13 aGl~aA~~l~~~-g-~~v~lie~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~ 78 (297)
T 3fbs_A 13 AGLSAALQLGRA-R-KNILLVDAGERRNRFASHSH-----G------FLGQDGKAPGEIIAEARRQIERYPTIHWVE-GR 78 (297)
T ss_dssp HHHHHHHHHHHT-T-CCEEEEECCCCGGGGCSCCC-----S------STTCTTCCHHHHHHHHHHHHTTCTTEEEEE-SC
T ss_pred HHHHHHHHHHhC-C-CCEEEEeCCCcccccchhhc-----C------CcCCCCCCHHHHHHHHHHHHHhcCCeEEEE-eE
Confidence 466655555422 2 36778876543333332211 1 222 2456778888888888777 677765 58
Q ss_pred EEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 93 VISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 93 V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
|+.+..+++ . +.|.+. +|+ ++.+|.||+|+|.+.
T Consensus 79 v~~i~~~~~--~-~~v~~~---~g~--~~~~d~vviAtG~~~ 112 (297)
T 3fbs_A 79 VTDAKGSFG--E-FIVEID---GGR--RETAGRLILAMGVTD 112 (297)
T ss_dssp EEEEEEETT--E-EEEEET---TSC--EEEEEEEEECCCCEE
T ss_pred EEEEEEcCC--e-EEEEEC---CCC--EEEcCEEEECCCCCC
Confidence 999988653 2 455553 354 699999999999963
No 181
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=80.50 E-value=2.3 Score=43.36 Aligned_cols=56 Identities=13% Similarity=0.011 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..+...+.+...+.|++++.+++|+++.. + + ++..|.+ +|+ ++.||.||.|+|.-.
T Consensus 236 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~-~-~v~~v~~----~g~--~i~~D~Vi~a~G~~p 291 (490)
T 2bc0_A 236 RDLTDLMAKNMEEHGIQLAFGETVKEVAG-N-G-KVEKIIT----DKN--EYDVDMVILAVGFRP 291 (490)
T ss_dssp HHHHHHHHHHHHTTTCEEEETCCEEEEEC-S-S-SCCEEEE----SSC--EEECSEEEECCCEEE
T ss_pred HHHHHHHHHHHHhCCeEEEeCCEEEEEEc-C-C-cEEEEEE----CCc--EEECCEEEECCCCCc
Confidence 45666777778889999999999999975 3 3 4545554 254 699999999999754
No 182
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=80.29 E-value=1.7 Score=41.55 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=38.3
Q ss_pred HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 81 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 81 ~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.+.|++++.+++|+.+..++ ++.+|.+.+..+|+..++.+|.||.|+|.-.
T Consensus 202 ~~~gV~v~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p 252 (335)
T 2a87_A 202 NNDKIRFLTNHTVVAVDGDT---TVTGLRVRDTNTGAETTLPVTGVFVAIGHEP 252 (335)
T ss_dssp HCTTEEEECSEEEEEEECSS---SCCEEEEEEETTSCCEEECCSCEEECSCEEE
T ss_pred ccCCcEEEeCceeEEEecCC---cEeEEEEEEcCCCceEEeecCEEEEccCCcc
Confidence 46899999999999997643 4456777643345445799999999999753
No 183
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=77.15 E-value=4.8 Score=37.82 Aligned_cols=58 Identities=7% Similarity=0.010 Sum_probs=42.5
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+.+..+...+.+.+.+.|++++.++ |+.+..+++ . +.| +. +|. ++.+|.||+|+|.+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~--~-~~v-~~---~~~--~~~~~~lv~AtG~~~ 116 (320)
T 1trb_A 59 LTGPLLMERMHEHATKFETEIIFDH-INKVDLQNR--P-FRL-NG---DNG--EYTCDALIIATGASA 116 (320)
T ss_dssp CBHHHHHHHHHHHHHHTTCEEECCC-EEEEECSSS--S-EEE-EE---SSC--EEEEEEEEECCCEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEee-eeEEEecCC--E-EEE-Ee---CCC--EEEcCEEEECCCCCc
Confidence 4556677777778888999999876 988876543 2 334 33 344 699999999999863
No 184
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=77.08 E-value=8.9 Score=39.33 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCC---CCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEA---SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~---g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+..+...+.+...+.|++++.+++|+.+....+ + . ..|.+.+...++..++.+|.||.|+|.-
T Consensus 249 d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~-~-~~v~~~~~~g~~~~~~~~D~vi~a~G~~ 314 (519)
T 3qfa_A 249 DQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPG-R-LRVVAQSTNSEEIIEGEYNTVMLAIGRD 314 (519)
T ss_dssp CHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTC-E-EEEEEEESSSSCEEEEEESEEEECSCEE
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCc-e-EEEEEEECCCcEEEEEECCEEEEecCCc
Confidence 345667777778899999999988888865321 2 2 2344443222333578999999999964
No 185
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=77.03 E-value=1.7 Score=43.01 Aligned_cols=61 Identities=8% Similarity=0.011 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhh
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 141 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~ 141 (465)
+..+...+.+...+.|++++.+++|+++.. + +|.+. +|+ ++.+|.||.|+|.....+....
T Consensus 217 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~-----~v~~~---~g~--~~~~D~vi~a~G~~~~~~l~~~ 277 (409)
T 3h8l_A 217 SPNSRKAVASIYNQLGIKLVHNFKIKEIRE--H-----EIVDE---KGN--TIPADITILLPPYTGNPALKNS 277 (409)
T ss_dssp CHHHHHHHHHHHHHHTCEEECSCCEEEECS--S-----EEEET---TSC--EEECSEEEEECCEECCHHHHTS
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECC--C-----eEEEC---CCC--EEeeeEEEECCCCCccHHHHhc
Confidence 356777788888899999999999999842 2 25554 355 6999999999999887765544
No 186
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=76.99 E-value=2.1 Score=43.01 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=36.7
Q ss_pred HHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 78 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 78 ~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+...++|++++.+++|+.+..+++ .|.+.+..+|+..++.+|.||+|+|.+
T Consensus 64 ~~~~~~gv~~~~~~~v~~i~~~~~-----~v~~~~~~~g~~~~~~~d~lviAtG~~ 114 (447)
T 1nhp_A 64 EKMESRGVNVFSNTEITAIQPKEH-----QVTVKDLVSGEERVENYDKLIISPGAV 114 (447)
T ss_dssp HHHHHTTCEEEETEEEEEEETTTT-----EEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred HHHHHCCCEEEECCEEEEEeCCCC-----EEEEEecCCCceEEEeCCEEEEcCCCC
Confidence 344567999988999999976542 355554223554469999999999975
No 187
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=76.80 E-value=3.3 Score=42.12 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCC-CcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLS-GKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~t-g~~~~i~a~~VVnAaG~wa~ 135 (465)
+..+...+.+...+.|++++.+++|+++..+++ . ..|.+.+... |+ ++.+|.||.|+|....
T Consensus 225 ~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~-~~v~~~~~~~~g~--~~~~D~vv~a~G~~p~ 287 (482)
T 1ojt_A 225 DRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKED--G-VYVTFEGANAPKE--PQRYDAVLVAAGRAPN 287 (482)
T ss_dssp CHHHHHHHHHHHGGGEEEEECSCEEEEEEEETT--E-EEEEEESSSCCSS--CEEESCEEECCCEEEC
T ss_pred CHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCC--e-EEEEEeccCCCce--EEEcCEEEECcCCCcC
Confidence 345566667777789999999999999987643 2 4566553111 33 5889999999997643
No 188
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=76.03 E-value=2.6 Score=42.41 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+..+...+.+.+.+.|++++.+++|+.+..+++ .|.+.+..+|+..++.+|.||+|+|.+
T Consensus 57 ~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~-----~v~v~~~~~g~~~~~~~d~lviAtGs~ 116 (452)
T 2cdu_A 57 PRGLFYSSPEELSNLGANVQMRHQVTNVDPETK-----TIKVKDLITNEEKTEAYDKLIMTTGSK 116 (452)
T ss_dssp GGGGBSCCHHHHHHTTCEEEESEEEEEEEGGGT-----EEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred HHHhhhcCHHHHHHcCCEEEeCCEEEEEEcCCC-----EEEEEecCCCceEEEECCEEEEccCCC
Confidence 433333334445678999988999999976542 355554223434579999999999964
No 189
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=75.92 E-value=3.8 Score=38.54 Aligned_cols=60 Identities=10% Similarity=0.020 Sum_probs=40.4
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+.|..+.....+.+.+.+...+....|+.+...+++ .+.|.+. +|+ ++.+|.||+|+|..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~---~g~--~~~a~~liiATGs~ 116 (304)
T 4fk1_A 57 IKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTG--LFEIVTK---DHT--KYLAERVLLATGMQ 116 (304)
T ss_dssp BCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECTTS--CEEEEET---TCC--EEEEEEEEECCCCE
T ss_pred CCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCCC--cEEEEEC---CCC--EEEeCEEEEccCCc
Confidence 567777777777777777655555667777665543 3445443 354 79999999999974
No 190
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=75.25 E-value=9.9 Score=38.65 Aligned_cols=61 Identities=21% Similarity=0.104 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+..+...+.+...+. ++++.+++|+.+..+++ ++. |.+.+ .+|+..++.+|.||.|+|...
T Consensus 214 d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~--~v~-v~~~~-~~G~~~~i~~D~Vi~a~G~~p 274 (492)
T 3ic9_A 214 DEEMKRYAEKTFNEE-FYFDAKARVISTIEKED--AVE-VIYFD-KSGQKTTESFQYVLAATGRKA 274 (492)
T ss_dssp CHHHHHHHHHHHHTT-SEEETTCEEEEEEECSS--SEE-EEEEC-TTCCEEEEEESEEEECSCCEE
T ss_pred CHHHHHHHHHHHhhC-cEEEECCEEEEEEEcCC--EEE-EEEEe-CCCceEEEECCEEEEeeCCcc
Confidence 345555566665666 99999999999987653 333 55442 246445899999999999754
No 191
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=75.15 E-value=3.3 Score=39.49 Aligned_cols=58 Identities=19% Similarity=0.155 Sum_probs=42.1
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEE-EEEECCCCcEEEEEccEEEEccCCCh
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGA-RIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV-~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+++..+...+.+.+.+.|++++.++ |+++.. ++ . +.| .+. +|+ ++.+|.||+|+|.+.
T Consensus 68 ~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~~--~-~~v~~~~---~g~--~~~~d~lviAtG~~~ 126 (335)
T 2a87_A 68 ITGPELMDEMREQALRFGADLRMED-VESVSL-HG--P-LKSVVTA---DGQ--THRARAVILAMGAAA 126 (335)
T ss_dssp BCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-SS--S-SEEEEET---TSC--EEEEEEEEECCCEEE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-CC--c-EEEEEeC---CCC--EEEeCEEEECCCCCc
Confidence 4556677777777888999999886 888876 32 2 334 332 344 699999999999864
No 192
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=75.13 E-value=3.7 Score=42.18 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCc--EEEEEccEEEEccCCChHH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGK--EFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~--~~~i~a~~VVnAaG~wa~~ 136 (465)
|..+...+.+...++|++|+.+++|+++.. + .+. +.+.. .+|+ ..+|.||.||.|+|.-...
T Consensus 271 ~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~--~~~-~~~~~-~dg~~~~~~i~ad~viwa~Gv~~~~ 334 (502)
T 4g6h_A 271 EKKLSSYAQSHLENTSIKVHLRTAVAKVEE--K--QLL-AKTKH-EDGKITEETIPYGTLIWATGNKARP 334 (502)
T ss_dssp CHHHHHHHHHHHHHTTCEEETTEEEEEECS--S--EEE-EEEEC-TTSCEEEEEEECSEEEECCCEECCH
T ss_pred CHHHHHHHHHHHHhcceeeecCceEEEEeC--C--ceE-EEEEe-cCcccceeeeccCEEEEccCCcCCH
Confidence 456667777777899999999999999853 2 221 22221 1232 2369999999999975543
No 193
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=74.97 E-value=2.7 Score=41.67 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=33.4
Q ss_pred HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 81 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 81 ~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
...+.+|+.+++|++|..+++ ++. |++. +| ++.||.||+|++++.
T Consensus 214 ~~l~~~v~~~~~V~~i~~~~~--~v~-v~~~---~g---~~~ad~Vv~a~~~~~ 258 (424)
T 2b9w_A 214 ATLEHPAERNVDITRITREDG--KVH-IHTT---DW---DRESDVLVLTVPLEK 258 (424)
T ss_dssp HHSSSCCBCSCCEEEEECCTT--CEE-EEES---SC---EEEESEEEECSCHHH
T ss_pred HhhcceEEcCCEEEEEEEECC--EEE-EEEC---CC---eEEcCEEEECCCHHH
Confidence 345678899999999987653 433 5442 34 489999999999973
No 194
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=74.70 E-value=3.2 Score=42.19 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcE--EEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKE--FDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~--~~i~a~~VVnAaG~wa 134 (465)
.++.+|++... .+|+.+++|+.|..+++ + +.|.+.+ |+. .++.||.||+|++++.
T Consensus 242 ~l~~~l~~~l~---~~i~~~~~V~~I~~~~~--~-v~v~~~~---~~~~~~~~~ad~vI~t~p~~~ 298 (498)
T 2iid_A 242 KLPTAMYRDIQ---DKVHFNAQVIKIQQNDQ--K-VTVVYET---LSKETPSVTADYVIVCTTSRA 298 (498)
T ss_dssp HHHHHHHHHTG---GGEESSCEEEEEEECSS--C-EEEEEEC---SSSCCCEEEESEEEECSCHHH
T ss_pred HHHHHHHHhcc---cccccCCEEEEEEECCC--e-EEEEEec---CCcccceEEeCEEEECCChHH
Confidence 46666665433 38999999999998764 3 3565553 322 1589999999999863
No 195
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=74.18 E-value=2.7 Score=45.70 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=34.1
Q ss_pred HHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 80 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 80 A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+...|++|+.+++|++|..+++ + +.|++. +|+ ++.||.||+|+.+.
T Consensus 539 aLa~gl~I~l~t~V~~I~~~~~--~-v~V~~~---~G~--~i~Ad~VIvA~P~~ 584 (776)
T 4gut_A 539 KLAEGLDIQLKSPVQCIDYSGD--E-VQVTTT---DGT--GYSAQKVLVTVPLA 584 (776)
T ss_dssp HHHTTSCEESSCCEEEEECSSS--S-EEEEET---TCC--EEEESEEEECCCHH
T ss_pred HHHhCCcEEcCCeeEEEEEcCC--E-EEEEEC---CCc--EEEcCEEEECCCHH
Confidence 3446899999999999988764 3 234443 354 69999999999764
No 196
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=72.89 E-value=1.5 Score=45.15 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=32.8
Q ss_pred CCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 84 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 84 Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+++|+.+++|+.|...++ ..+.|++. +|+ ++.||.||+|++++.-
T Consensus 214 ~~~i~~~~~V~~I~~~~~--~~v~v~~~---~g~--~~~ad~VI~t~p~~~l 258 (516)
T 1rsg_A 214 QNWLKLSCEVKSITREPS--KNVTVNCE---DGT--VYNADYVIITVPQSVL 258 (516)
T ss_dssp GGGEETTCCEEEEEECTT--SCEEEEET---TSC--EEEEEEEEECCCHHHH
T ss_pred CCEEEECCEEEEEEEcCC--CeEEEEEC---CCc--EEECCEEEECCCHHHh
Confidence 367999999999988532 22445543 354 6899999999987653
No 197
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=72.22 E-value=1.6 Score=44.42 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhh
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 141 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~ 141 (465)
..++.++++...+.|++|..+++|+.|..+++ + |++. +|+ ++.||.||.++-+ +.+.+++
T Consensus 222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~--~---v~~~---~G~--~~~ad~vI~t~P~--~~l~~~l 281 (513)
T 4gde_A 222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANNK--T---VTLQ---DGT--TIGYKKLVSTMAV--DFLAEAM 281 (513)
T ss_dssp HHHHHHHHHTSCGGGEEESGGGCEEEEETTTT--E---EEET---TSC--EEEEEEEEECSCH--HHHHHHT
T ss_pred HHHHHHHHHHHHhcCeeeecceEEEEEEccCC--E---EEEc---CCC--EEECCEEEECCCH--HHHHHhc
Confidence 35778888888888999999999999987652 2 4443 465 7999999887643 4454443
No 198
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=71.74 E-value=7.8 Score=40.01 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=36.2
Q ss_pred HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 81 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 81 ~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
.+.|++++.+++|+++..+++ .+.+.+..+|+..++.+|.||+|+|..
T Consensus 69 ~~~~i~~~~~~~V~~id~~~~-----~v~~~~~~~g~~~~~~~d~lviAtG~~ 116 (565)
T 3ntd_A 69 ARFNVEVRVKHEVVAIDRAAK-----LVTVRRLLDGSEYQESYDTLLLSPGAA 116 (565)
T ss_dssp HHHCCEEETTEEEEEEETTTT-----EEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred HhcCcEEEECCEEEEEECCCC-----EEEEEecCCCCeEEEECCEEEECCCCC
Confidence 457999999999999987542 345554334655679999999999983
No 199
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=71.24 E-value=6.4 Score=39.26 Aligned_cols=62 Identities=11% Similarity=-0.052 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 74 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 74 ~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
..+.+...++|++++.++.|++++ .+ ++.+.+. +|+..+|.+|.||.|+|.-...+....+.
T Consensus 204 ~~l~~~l~~~GV~~~~~~~v~~v~--~~-----~~~~~~~-~g~~~~i~~d~vi~~~G~~~~~~~~~~~~ 265 (430)
T 3hyw_A 204 RLVEDLFAERNIDWIANVAVKAIE--PD-----KVIYEDL-NGNTHEVPAKFTMFMPSFQGPEVVASAGD 265 (430)
T ss_dssp HHHHHHHHHTTCEEECSCEEEEEC--SS-----EEEEECT-TSCEEEEECSEEEEECEEECCHHHHTTCT
T ss_pred HHHHHHHHhCCeEEEeCceEEEEe--CC-----ceEEEee-CCCceEeecceEEEeccCCCchHHHhccc
Confidence 334455678999999999999984 22 2444442 45566899999999999877666655443
No 200
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=71.22 E-value=3.1 Score=40.65 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcCC
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 144 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~~ 144 (465)
..+...+.+...+.|++++.+++|+++. .+ +|.+. +| ++.+|.||.|+|.... .+.+.+|.+
T Consensus 183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~--~~-----~v~~~---~g---~i~~D~vi~a~G~~p~~~ll~~~gl~ 245 (367)
T 1xhc_A 183 EELSNMIKDMLEETGVKFFLNSELLEAN--EE-----GVLTN---SG---FIEGKVKICAIGIVPNVDLARRSGIH 245 (367)
T ss_dssp HHHHHHHHHHHHHTTEEEECSCCEEEEC--SS-----EEEET---TE---EEECSCEEEECCEEECCHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEE--ee-----EEEEC---CC---EEEcCEEEECcCCCcCHHHHHhCCCC
Confidence 4566667777888999999999999985 22 35553 24 2999999999998754 366665653
No 201
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=71.10 E-value=6.7 Score=39.56 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=33.1
Q ss_pred HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 81 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 81 ~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
.+.|++++.+++|+.+..+++ .+.+.+..+|+..++.+|.||+|+|.
T Consensus 77 ~~~gi~~~~~~~V~~id~~~~-----~v~~~~~~~g~~~~~~~d~lviAtG~ 123 (472)
T 3iwa_A 77 INKDVEALVETRAHAIDRAAH-----TVEIENLRTGERRTLKYDKLVLALGS 123 (472)
T ss_dssp ----CEEECSEEEEEEETTTT-----EEEEEETTTCCEEEEECSEEEECCCE
T ss_pred hhcCcEEEECCEEEEEECCCC-----EEEEeecCCCCEEEEECCEEEEeCCC
Confidence 357999999999999987542 34555433465567999999999996
No 202
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=70.64 E-value=5.3 Score=40.25 Aligned_cols=59 Identities=20% Similarity=0.077 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
+..+...+.+...+.|++++.+++|+++.. + + +.+.. .+|+..++.+|.||+|+|....
T Consensus 211 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~--~---v~v~~-~~G~~~~i~~D~vv~a~G~~p~ 269 (458)
T 1lvl_A 211 DSELTAPVAESLKKLGIALHLGHSVEGYEN--G--C---LLAND-GKGGQLRLEADRVLVAVGRRPR 269 (458)
T ss_dssp CHHHHHHHHHHHHHHTCEEETTCEEEEEET--T--E---EEEEC-SSSCCCEECCSCEEECCCEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEECCEEEEEEe--C--C---EEEEE-CCCceEEEECCEEEECcCCCcC
Confidence 345666677777889999999999999964 2 4 33332 2353237999999999997643
No 203
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=70.59 E-value=10 Score=39.48 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=37.7
Q ss_pred HHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 78 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 78 ~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
..+.+.|+.++.+++|+.+..+++ .+.+.+..+|+..++.+|.||+|+|.
T Consensus 101 ~~~~~~gi~v~~~~~V~~id~~~~-----~v~v~~~~~g~~~~~~~d~lviAtG~ 150 (588)
T 3ics_A 101 RMSKRFNLDIRVLSEVVKINKEEK-----TITIKNVTTNETYNEAYDVLILSPGA 150 (588)
T ss_dssp HHHHHTTCEEECSEEEEEEETTTT-----EEEEEETTTCCEEEEECSEEEECCCE
T ss_pred HHHHhcCcEEEECCEEEEEECCCC-----EEEEeecCCCCEEEEeCCEEEECCCC
Confidence 344578999999999999987653 34554433466567999999999996
No 204
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=70.53 E-value=5.2 Score=40.58 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=34.8
Q ss_pred HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 81 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 81 ~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
...|++++.+++|+.+..+++ .|.+.+..+|+..++.+|.||+|+|..
T Consensus 104 ~~~gv~~~~~~~v~~i~~~~~-----~v~v~~~~~g~~~~~~~d~lviAtG~~ 151 (480)
T 3cgb_A 104 DKYGIDAKVRHEVTKVDTEKK-----IVYAEHTKTKDVFEFSYDRLLIATGVR 151 (480)
T ss_dssp HTTCCEEESSEEEEEEETTTT-----EEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred hhcCCEEEeCCEEEEEECCCC-----EEEEEEcCCCceEEEEcCEEEECCCCc
Confidence 345999999999999976542 345543223554579999999999964
No 205
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=70.42 E-value=7.8 Score=38.78 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=37.1
Q ss_pred HHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 80 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 80 A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
..++|++++.+++|+.+..... .+.+.+..+++..++.+|++|+|+|..
T Consensus 67 ~~~~~i~~~~~~~V~~id~~~~-----~~~~~~~~~~~~~~~~yd~lVIATGs~ 115 (437)
T 4eqs_A 67 YDRKQITVKTYHEVIAINDERQ-----TVSVLNRKTNEQFEESYDKLILSPGAS 115 (437)
T ss_dssp HHHHCCEEEETEEEEEEETTTT-----EEEEEETTTTEEEEEECSEEEECCCEE
T ss_pred HHhcCCEEEeCCeEEEEEccCc-----EEEEEeccCCceEEEEcCEEEECCCCc
Confidence 3567999999999999987542 244444445666789999999999975
No 206
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=68.94 E-value=3.4 Score=41.89 Aligned_cols=55 Identities=24% Similarity=0.247 Sum_probs=38.6
Q ss_pred HHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC------C---------CCcEEEEEccEEEEccCCCh
Q 012358 77 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN------L---------SGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 77 ~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~------~---------tg~~~~i~a~~VVnAaG~wa 134 (465)
++.+.+.|++++.++.++.|..+ | ++.+|++.+. . +|++.++.||.||.|+|.-.
T Consensus 309 ~~~~~~~Gv~~~~~~~~~~i~~~--g-~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p 378 (456)
T 2vdc_G 309 VAHAEEEGVEFIWQAAPEGFTGD--T-VVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEP 378 (456)
T ss_dssp HHHHHHTTCEEECCSSSCCEEEE--E-EEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEEC
T ss_pred HHHHHHCCCEEEeCCCceEEeCC--C-cEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCC
Confidence 35677889999999999888753 3 5544444310 0 24446899999999999754
No 207
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=68.93 E-value=3 Score=42.53 Aligned_cols=50 Identities=20% Similarity=0.092 Sum_probs=35.6
Q ss_pred HHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 77 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 77 ~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
.+.+.+.|++++.+++|+.+..+++ .|.+.. +|+..++.+|.||+|+|.+
T Consensus 99 ~~~~~~~gv~v~~~~~v~~i~~~~~-----~v~v~~--~g~~~~~~~d~lviAtG~~ 148 (490)
T 2bc0_A 99 KEELESLGAKVYMESPVQSIDYDAK-----TVTALV--DGKNHVETYDKLIFATGSQ 148 (490)
T ss_dssp HHHHHHTTCEEETTCCEEEEETTTT-----EEEEEE--TTEEEEEECSEEEECCCEE
T ss_pred HHHHHhCCCEEEeCCEEEEEECCCC-----EEEEEe--CCcEEEEECCEEEECCCCC
Confidence 3445578999999999999976542 244431 1333479999999999965
No 208
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=66.90 E-value=8 Score=38.68 Aligned_cols=66 Identities=14% Similarity=0.066 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 144 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~~ 144 (465)
+..+...+.+...+. ++++.++.|..+..++ ++..+. . +|. ++.||.||+|+|.+.+ .+.+.+|.+
T Consensus 189 ~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~---~v~~v~-~---~g~--~i~~D~Vv~a~G~~p~~~l~~~~gl~ 255 (449)
T 3kd9_A 189 DKEVTDILEEKLKKH-VNLRLQEITMKIEGEE---RVEKVV-T---DAG--EYKAELVILATGIKPNIELAKQLGVR 255 (449)
T ss_dssp CHHHHHHHHHHHTTT-SEEEESCCEEEEECSS---SCCEEE-E---TTE--EEECSEEEECSCEEECCHHHHHTTCC
T ss_pred CHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC---cEEEEE-e---CCC--EEECCEEEEeeCCccCHHHHHhCCcc
Confidence 345666666666677 9999999999997543 333342 2 343 7999999999999843 555656654
No 209
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=66.86 E-value=12 Score=41.88 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=43.1
Q ss_pred HHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC---C-------CCcEEEEEccEEEEccCCC--hHHHhhh
Q 012358 78 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---L-------SGKEFDTYAKVVVNAAGPF--CDSVRKL 140 (465)
Q Consensus 78 ~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~---~-------tg~~~~i~a~~VVnAaG~w--a~~l~~~ 140 (465)
+.+.+.|++++.++.++.+..++ | ++.+|++.+. . +|++.++.||.||.|+|.- ...+...
T Consensus 378 ~~~~~~Gv~~~~~~~~~~i~~~~-g-~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~ 450 (1025)
T 1gte_A 378 ELAKEEKCEFLPFLSPRKVIVKG-G-RIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEA 450 (1025)
T ss_dssp HHHHHTTCEEECSEEEEEEEEET-T-EEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHH
T ss_pred HHHHHcCCEEEeCCCceEEEccC-C-eEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhc
Confidence 46678899999999999997654 4 7777766420 0 1334579999999999973 3455443
No 210
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=65.77 E-value=11 Score=39.93 Aligned_cols=49 Identities=10% Similarity=-0.025 Sum_probs=34.7
Q ss_pred CCCEEEcceeEEEEEEcCCCCeEEEEEEEEC-CCCcEEEEEccEEEEccCCCh
Q 012358 83 AGAAVLNHAEVISLIKDEASNRIIGARIRNN-LSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 83 ~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~-~tg~~~~i~a~~VVnAaG~wa 134 (465)
.|..|+.+++|+.|...++ . +.|++.+. .++...++.||+||+|..+..
T Consensus 409 ~~l~I~l~~~V~~I~~~~~--~-v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~v 458 (662)
T 2z3y_A 409 EGLDIKLNTAVRQVRYTAS--G-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 458 (662)
T ss_dssp TTCEEETTEEEEEEEEETT--E-EEEEEEESSCTTCEEEEEESEEEECCCHHH
T ss_pred hcCceecCCeEEEEEECCC--c-EEEEEeecccCCCCeEEEeCEEEECCCHHH
Confidence 4779999999999998764 3 34555541 112234799999999997653
No 211
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=65.70 E-value=11 Score=42.04 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=41.3
Q ss_pred HHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEE--CC--CCcEEEEEccEEEEccCCC
Q 012358 77 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRN--NL--SGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 77 ~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d--~~--tg~~~~i~a~~VVnAaG~w 133 (465)
.+.+.+.|++|+.++.|+.+..++++ ++.+|++.+ .. +|+..+|.||.||.|+|.-
T Consensus 323 ~~~l~~~GV~v~~~~~v~~i~~~~~~-~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~ 382 (965)
T 2gag_A 323 AAQAVADGVQVISGSVVVDTEADENG-ELSAIVVAELDEARELGGTQRFEADVLAVAGGFN 382 (965)
T ss_dssp HHHHHHTTCCEEETEEEEEEEECTTS-CEEEEEEEEECTTCCEEEEEEEECSEEEEECCEE
T ss_pred HHHHHhCCeEEEeCCEeEEEeccCCC-CEEEEEEEeccccCCCCceEEEEcCEEEECCCcC
Confidence 45567899999999999999864123 677888764 11 1433579999999999964
No 212
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=65.15 E-value=11 Score=37.95 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=37.6
Q ss_pred CCCEEEcceeEEEEEEcCCCCeEEEEEEEECC------------CCcEEEEEccEEEEccCCChHH
Q 012358 83 AGAAVLNHAEVISLIKDEASNRIIGARIRNNL------------SGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 83 ~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~------------tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
.|++|++++.++.|..+++++++.+|++.+.. +|+..++.||.||.|+|.-...
T Consensus 270 ~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~ 335 (460)
T 1cjc_A 270 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP 335 (460)
T ss_dssp EEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC
T ss_pred ceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC
Confidence 89999999999999765311046667664210 2444579999999999976544
No 213
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=64.79 E-value=11 Score=37.54 Aligned_cols=58 Identities=10% Similarity=-0.058 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHH
Q 012358 72 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 137 (465)
Q Consensus 72 l~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l 137 (465)
+...+.+...++|++++.+++|+++.. + ++.+.+. .++..++.+|.||.|+|......
T Consensus 202 ~~~~l~~~l~~~GV~i~~~~~v~~v~~--~-----~v~~~~~-~~~g~~i~~D~vv~a~G~~~~~~ 259 (430)
T 3h28_A 202 SKRLVEDLFAERNIDWIANVAVKAIEP--D-----KVIYEDL-NGNTHEVPAKFTMFMPSFQGPEV 259 (430)
T ss_dssp HHHHHHHHHHHTTCEEECSCEEEEECS--S-----EEEEECT-TSCEEEEECSEEEEECEEECCHH
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEeC--C-----eEEEEec-CCCceEEeeeEEEECCCCccchh
Confidence 555666777889999999999999842 2 2455532 23345799999999999765443
No 214
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=63.55 E-value=8.7 Score=38.77 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=36.8
Q ss_pred CCCEEEcceeEEEEEEcCCCCeEEEEEEEEC-------------CCCcEEEEEccEEEEccCCChHH
Q 012358 83 AGAAVLNHAEVISLIKDEASNRIIGARIRNN-------------LSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 83 ~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~-------------~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
.|+++++++.++.|..+ + ++.+|++.+. .+|+..++.||.||.|+|.-...
T Consensus 265 ~gv~i~~~~~~~~i~~~--~-~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~ 328 (456)
T 1lqt_A 265 RRMVFRFLTSPIEIKGK--R-KVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP 328 (456)
T ss_dssp EEEEEECSEEEEEEECS--S-SCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC
T ss_pred ceEEEEeCCCCeEEecC--C-cEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC
Confidence 79999999999999754 2 5556666421 13544579999999999976544
No 215
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=63.49 E-value=2.9 Score=41.85 Aligned_cols=59 Identities=8% Similarity=0.099 Sum_probs=41.6
Q ss_pred eEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 66 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 66 ~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
..++..+...+.+.+.+.|++++. ++|+.+..+++ .|.+. +|+ ++.+|.||+|+|....
T Consensus 55 ~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~id~~~~-----~V~~~---~g~--~i~~d~lviAtG~~~~ 113 (437)
T 3sx6_A 55 WKERDDIAFPIRHYVERKGIHFIA-QSAEQIDAEAQ-----NITLA---DGN--TVHYDYLMIATGPKLA 113 (437)
T ss_dssp SSCHHHHEEECHHHHHTTTCEEEC-SCEEEEETTTT-----EEEET---TSC--EEECSEEEECCCCEEC
T ss_pred ccCHHHHHHHHHHHHHHCCCEEEE-eEEEEEEcCCC-----EEEEC---CCC--EEECCEEEECCCCCcC
Confidence 345555555566677789999985 68999976542 35543 354 6999999999998643
No 216
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=63.12 E-value=20 Score=36.98 Aligned_cols=57 Identities=19% Similarity=0.127 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+..+...+.+...+.|+.+++++.|..+...++ . ..|.+. ++. ++.+|.|++|+|--
T Consensus 262 D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~--~-~~v~~~---~~~--~~~~D~vLvAvGR~ 318 (542)
T 4b1b_A 262 DQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDD--K-ILVEFS---DKT--SELYDTVLYAIGRK 318 (542)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETCCEEEEEEETT--E-EEEEET---TSC--EEEESEEEECSCEE
T ss_pred chhHHHHHHHHHHhhcceeecceEEEEEEecCC--e-EEEEEc---CCC--eEEEEEEEEccccc
Confidence 445777788888999999999999999988763 3 224432 233 68899999999953
No 217
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=62.01 E-value=12 Score=36.80 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=40.0
Q ss_pred chhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 68 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 68 dp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
++..+...+.+.+.+.|++++.+ +|+.+..+++ .|.+.+. +++..++.+|.||+|+|...
T Consensus 54 ~~~~~~~~~~~~~~~~gv~~~~~-~v~~i~~~~~-----~V~~~~g-~~~~~~~~~d~lViAtG~~~ 113 (409)
T 3h8l_A 54 DVDELKVDLSEALPEKGIQFQEG-TVEKIDAKSS-----MVYYTKP-DGSMAEEEYDYVIVGIGAHL 113 (409)
T ss_dssp CCCCEEEEHHHHTGGGTCEEEEC-EEEEEETTTT-----EEEEECT-TSCEEEEECSEEEECCCCEE
T ss_pred CHHHHHHHHHHHHhhCCeEEEEe-eEEEEeCCCC-----EEEEccC-CcccceeeCCEEEECCCCCc
Confidence 33333344455556789999876 8999976542 3566542 23345699999999999853
No 218
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=61.88 E-value=14 Score=34.16 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=42.3
Q ss_pred eEchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcC--CCCeEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 66 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE--ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 66 ~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~--~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
.+.+..+...+...+.+.|++++.+ +|+++ .++ + . +.|.+. ++. ++.+|.||+|+|.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~--~-~~v~~~---~~~--~~~~d~lvlAtG~ 116 (315)
T 3r9u_A 58 VMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNSDG--S-FTIKLE---GGK--TELAKAVIVCTGS 116 (315)
T ss_dssp CBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECTTS--C-EEEEET---TSC--EEEEEEEEECCCE
T ss_pred CCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCCCC--c-EEEEEe---cCC--EEEeCEEEEeeCC
Confidence 3566778888888888899999887 89998 554 3 2 333232 233 7999999999997
No 219
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=60.07 E-value=5.7 Score=40.25 Aligned_cols=59 Identities=8% Similarity=-0.062 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCe----EEEEEEEECCCCcE-EEEEccEEEEccCCCh
Q 012358 71 RLNVGLALTAALAG-AAVLNHAEVISLIKDEASNR----IIGARIRNNLSGKE-FDTYAKVVVNAAGPFC 134 (465)
Q Consensus 71 rl~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~----v~gV~~~d~~tg~~-~~i~a~~VVnAaG~wa 134 (465)
.++.+|++ ..| ++|+.+++|++|..++++ . .+.|++.+. +|.. .++.||.||.|+.++.
T Consensus 244 ~l~~~l~~---~l~~~~i~~~~~V~~I~~~~~~-~~~~~~~~v~~~~~-~g~~~~~~~ad~VI~a~p~~~ 308 (504)
T 1sez_A 244 TLTDAICK---DLREDELRLNSRVLELSCSCTE-DSAIDSWSIISASP-HKRQSEEESFDAVIMTAPLCD 308 (504)
T ss_dssp HHHHHHHT---TSCTTTEETTCCEEEEEEECSS-SSSSCEEEEEEBCS-SSSCBCCCEESEEEECSCHHH
T ss_pred HHHHHHHh---hcccceEEcCCeEEEEEecCCC-CcccceEEEEEcCC-CCccceeEECCEEEECCCHHH
Confidence 45555554 346 789999999999887642 1 256766431 2311 2689999999998864
No 220
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=59.84 E-value=4.2 Score=39.76 Aligned_cols=45 Identities=11% Similarity=-0.047 Sum_probs=33.0
Q ss_pred HHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 78 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 78 ~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+...+.|++++.+++|+.+.... + .|. . +|+ ++.+|.||+|+|..
T Consensus 68 ~~~~~~~v~~~~g~~v~~id~~~---~--~V~-~---~g~--~~~~d~lViATGs~ 112 (367)
T 1xhc_A 68 DWYRKRGIEIRLAEEAKLIDRGR---K--VVI-T---EKG--EVPYDTLVLATGAR 112 (367)
T ss_dssp HHHHHHTEEEECSCCEEEEETTT---T--EEE-E---SSC--EEECSEEEECCCEE
T ss_pred HHHHhCCcEEEECCEEEEEECCC---C--EEE-E---CCc--EEECCEEEECCCCC
Confidence 34456799999999999987643 1 243 3 354 69999999999963
No 221
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=58.14 E-value=1.6 Score=43.84 Aligned_cols=43 Identities=23% Similarity=0.214 Sum_probs=32.0
Q ss_pred HHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 80 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 80 A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
..++|++++.. +|++|+.+++ .|++. +|+ +|..|++|+|+|+-
T Consensus 66 ~~~~gv~~i~~-~v~~Id~~~~-----~V~~~---~g~--~i~YD~LViAtG~~ 108 (430)
T 3hyw_A 66 LPKFNIEFINE-KAESIDPDAN-----TVTTQ---SGK--KIEYDYLVIATGPK 108 (430)
T ss_dssp GGGGTEEEECS-CEEEEETTTT-----EEEET---TCC--EEECSEEEECCCCE
T ss_pred HHHCCcEEEEe-EEEEEECCCC-----EEEEC---CCC--EEECCEEEEeCCCC
Confidence 34679998865 7999987653 35553 465 69999999999974
No 222
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=58.00 E-value=7.9 Score=37.58 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=39.3
Q ss_pred CCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcCC
Q 012358 83 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 144 (465)
Q Consensus 83 ~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 144 (465)
.+..|..+++|+++...+++ . +.|++. +|+ +++||.||-|-|.+|. +++.++..
T Consensus 122 ~~~~v~~~~~v~~~~~~~~~-~-v~v~~~---dG~--~~~adlvVgADG~~S~-vR~~l~~~ 175 (412)
T 4hb9_A 122 LANTIQWNKTFVRYEHIENG-G-IKIFFA---DGS--HENVDVLVGADGSNSK-VRKQYLPF 175 (412)
T ss_dssp CTTTEECSCCEEEEEECTTS-C-EEEEET---TSC--EEEESEEEECCCTTCH-HHHHHSTT
T ss_pred ccceEEEEEEEEeeeEcCCC-e-EEEEEC---CCC--EEEeeEEEECCCCCcc-hHHHhCCC
Confidence 46678899999999876554 3 335544 365 6899999999999974 56666554
No 223
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=57.30 E-value=9.9 Score=37.88 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 78 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 78 ~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+.+.+.|++++.+++|+.+..++. .|.+. +|+ ++.+|.||+|+|...
T Consensus 68 ~~~~~~gv~~~~~~~v~~i~~~~~-----~v~~~---~g~--~~~~d~lviAtG~~p 114 (431)
T 1q1r_A 68 DAYAAQNIQLLGGTQVTAINRDRQ-----QVILS---DGR--ALDYDRLVLATGGRP 114 (431)
T ss_dssp HHHHHTTEEEECSCCEEEEETTTT-----EEEET---TSC--EEECSEEEECCCEEE
T ss_pred HHHHhCCCEEEeCCEEEEEECCCC-----EEEEC---CCC--EEECCEEEEcCCCCc
Confidence 344678999999999999976542 35553 354 699999999999853
No 224
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=56.39 E-value=23 Score=35.35 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=36.4
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+.+...+.|++++.+++|+++..+++ .+.+. . .++..++.+|.||+|+|..
T Consensus 64 ~~~~~~~~gi~~~~~~~V~~id~~~~---~v~v~--~--~~~~~~~~~d~lviAtG~~ 114 (452)
T 3oc4_A 64 TEEELRRQKIQLLLNREVVAMDVENQ---LIAWT--R--KEEQQWYSYDKLILATGAS 114 (452)
T ss_dssp CHHHHHHTTEEEECSCEEEEEETTTT---EEEEE--E--TTEEEEEECSEEEECCCCC
T ss_pred CHHHHHHCCCEEEECCEEEEEECCCC---EEEEE--e--cCceEEEEcCEEEECCCcc
Confidence 34455678999999999999987642 23333 1 1234579999999999984
No 225
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=55.92 E-value=39 Score=35.07 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHhCCCEEEcceeEEEEEEc-----CC---CCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 70 SRLNVGLALTAALAGAAVLNHAEVISLIKD-----EA---SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 70 ~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~-----~~---g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
..+...+.+...+.|++++.++.++.+... .+ + ++ .+.+.. .+|++.++.+|.||.|+|.-.
T Consensus 326 ~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~-~~-~v~~~~-~~g~~~~~~~D~vi~a~G~~p 395 (598)
T 2x8g_A 326 QQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPG-LL-LVKGHY-TDGKKFEEEFETVIFAVGREP 395 (598)
T ss_dssp HHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCC-EE-EEEEEE-TTSCEEEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCc-eE-EEEEEe-CCCcEEeccCCEEEEEeCCcc
Confidence 345556666677899999999988887542 11 2 22 233322 246655567999999999653
No 226
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=55.73 E-value=8.3 Score=38.58 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQ 143 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~ 143 (465)
+..+...+.+...++|++++.+++|+++. ++ .|.+. +|+ ++.+|.||.|+|.-.+ .+.+..|.
T Consensus 187 d~~~~~~~~~~l~~~gV~i~~~~~v~~~~--~~-----~v~~~---~g~--~~~~D~vl~a~G~~Pn~~~~~~~gl 250 (437)
T 4eqs_A 187 DADMNQPILDELDKREIPYRLNEEINAIN--GN-----EITFK---SGK--VEHYDMIIEGVGTHPNSKFIESSNI 250 (437)
T ss_dssp CGGGGHHHHHHHHHTTCCEEESCCEEEEE--TT-----EEEET---TSC--EEECSEEEECCCEEESCGGGTTSSC
T ss_pred cchhHHHHHHHhhccceEEEeccEEEEec--CC-----eeeec---CCe--EEeeeeEEEEeceecCcHHHHhhhh
Confidence 34566667777889999999999999874 22 35553 355 6999999999996432 34444444
No 227
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=55.40 E-value=13 Score=35.65 Aligned_cols=58 Identities=12% Similarity=0.004 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCC-CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 72 LNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 72 l~~~l~~~A~~~G-a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
+...+.+...+.| ++++.+++|..+..+++ . +.|.+. +|+. ...+|.||.|+|.-.+.
T Consensus 216 ~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~--~-~~v~~~---~g~~-~~~~d~vi~a~G~~~~~ 274 (369)
T 3d1c_A 216 TRQRLGNVIKQGARIEMNVHYTVKDIDFNNG--Q-YHISFD---SGQS-VHTPHEPILATGFDATK 274 (369)
T ss_dssp HHHHHHHHHHTTCCEEEECSCCEEEEEEETT--E-EEEEES---SSCC-EEESSCCEECCCBCGGG
T ss_pred HHHHHHHHHhhCCcEEEecCcEEEEEEecCC--c-eEEEec---CCeE-eccCCceEEeeccCCcc
Confidence 3344455556776 99999999999976542 2 345553 3542 23469999999986543
No 228
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=55.21 E-value=23 Score=37.47 Aligned_cols=51 Identities=14% Similarity=-0.015 Sum_probs=37.1
Q ss_pred HHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 75 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 75 ~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.+.+...+.|++++.+++|+.+. ++ . +.+.. +|+..++.+|.||.|+|.-.
T Consensus 578 ~~~~~l~~~GV~v~~~~~v~~i~--~~--~---v~~~~--~G~~~~i~~D~Vi~a~G~~p 628 (671)
T 1ps9_A 578 IHRTTLLSRGVKMIPGVSYQKID--DD--G---LHVVI--NGETQVLAVDNVVICAGQEP 628 (671)
T ss_dssp HHHHHHHHTTCEEECSCEEEEEE--TT--E---EEEEE--TTEEEEECCSEEEECCCEEE
T ss_pred HHHHHHHhcCCEEEeCcEEEEEe--CC--e---EEEec--CCeEEEEeCCEEEECCCccc
Confidence 34455678999999999999986 22 2 33322 46555799999999999754
No 229
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=54.46 E-value=37 Score=31.32 Aligned_cols=52 Identities=23% Similarity=0.183 Sum_probs=39.1
Q ss_pred HHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 80 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 80 A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
....+...+..+.+..+...++ ...++.+.+..+++..++.+|.||.|+|.-
T Consensus 198 ~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~ 249 (314)
T 4a5l_A 198 LNHPKIEVIWNSELVELEGDGD--LLNGAKIHNLVSGEYKVVPVAGLFYAIGHS 249 (314)
T ss_dssp HTCTTEEEECSEEEEEEEESSS--SEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred hcccceeeEeeeeeEEEEeeee--ccceeEEeecccccceeeccccceEecccc
Confidence 3455777777788888876553 567788877666666789999999999964
No 230
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=53.31 E-value=6.6 Score=39.96 Aligned_cols=54 Identities=6% Similarity=-0.026 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHhCCCEEEcc--eeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 69 DSRLNVGLALTAALAGAAVLNH--AEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~--t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
...++.+|++...+. +|+.+ ++|++|..+++ +|++. +|+ ++.||.||+|+.++.
T Consensus 215 ~~~l~~~la~~l~~~--~i~~~~~~~V~~I~~~~~-----~v~~~---~G~--~~~ad~VI~a~p~~~ 270 (484)
T 4dsg_A 215 TGIIYQAIKEKLPSE--KLTFNSGFQAIAIDADAK-----TITFS---NGE--VVSYDYLISTVPFDN 270 (484)
T ss_dssp THHHHHHHHHHSCGG--GEEECGGGCEEEEETTTT-----EEEET---TSC--EEECSEEEECSCHHH
T ss_pred HHHHHHHHHhhhhhC--eEEECCCceeEEEEecCC-----EEEEC---CCC--EEECCEEEECCCHHH
Confidence 445677777654322 67777 57999987653 34443 465 699999999997764
No 231
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=52.46 E-value=3.3 Score=40.52 Aligned_cols=50 Identities=16% Similarity=0.022 Sum_probs=40.4
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
++...+...|.+.+.+.|++++.+++|+++.. . . ++.||.||.|.|.+|.
T Consensus 95 ~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~--------------~---~~~ad~vV~AdG~~S~ 144 (381)
T 3c4a_A 95 VERRGLVHALRDKCRSQGIAIRFESPLLEHGE--L--------------P---LADYDLVVLANGVNHK 144 (381)
T ss_dssp EEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--C--------------C---GGGCSEEEECCGGGGG
T ss_pred ecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--c--------------c---cccCCEEEECCCCCch
Confidence 56667888899999889999999999987631 0 0 2579999999999987
No 232
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=52.22 E-value=29 Score=38.01 Aligned_cols=49 Identities=10% Similarity=-0.025 Sum_probs=34.2
Q ss_pred CCCEEEcceeEEEEEEcCCCCeEEEEEEEECC-CCcEEEEEccEEEEccCCCh
Q 012358 83 AGAAVLNHAEVISLIKDEASNRIIGARIRNNL-SGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 83 ~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~-tg~~~~i~a~~VVnAaG~wa 134 (465)
.+..|+.+++|+.|...++ . +.|++.+.. ++...++.||+||+|.-++.
T Consensus 580 ~~l~I~Lnt~V~~I~~~~~--g-V~V~~~~~~~~~~g~~i~AD~VIvTvPl~v 629 (852)
T 2xag_A 580 EGLDIKLNTAVRQVRYTAS--G-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 629 (852)
T ss_dssp TTCCEECSEEEEEEEEETT--E-EEEEEEESSSTTCEEEEEESEEEECCCHHH
T ss_pred hCCCEEeCCeEEEEEEcCC--c-EEEEEeecccCCCCeEEECCEEEECCCHHH
Confidence 3568999999999998764 3 345555411 12234799999999997653
No 233
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=52.10 E-value=1.3e+02 Score=28.79 Aligned_cols=94 Identities=10% Similarity=0.073 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHhCccHHHHHHHHhccCCCCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhH
Q 012358 341 VMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALP 420 (465)
Q Consensus 341 ~~~~~~~~~l~~~yG~~a~~v~~~~~~~~~~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~ 420 (465)
++-++.+-.|+..||+ ...|++.+.+ ....+....+ -.+++...-+.-+....+ ..+.+.. --.+
T Consensus 239 GiG~KtA~kll~~~gs-le~i~~~~~~--~k~~~~~~~~--~~~~r~l~l~~~V~~~~~-----~~l~~~~-----pd~~ 303 (341)
T 3q8k_A 239 GIGPKRAVDLIQKHKS-IEEIVRRLDP--NKYPVPENWL--HKEAHQLFLEPEVLDPES-----VELKWSE-----PNEE 303 (341)
T ss_dssp TCCHHHHHHHHHHHCS-HHHHHHHSCT--TTSCCCTTCC--HHHHHHHHHSCCCCCTTT-----SCCCCCC-----CCHH
T ss_pred CccHHHHHHHHHHcCC-HHHHHHHHHh--cCCCCCcccc--hHHHHHHhCCCCCCCCcc-----cccCCCC-----CCHH
Confidence 4888999999999998 4555554322 1112333333 345666665544432212 2233322 2344
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 012358 421 RIIEIMATEHKWDKSRRKQELQKAKEFLE 449 (465)
Q Consensus 421 ~v~~~~a~~lgw~~~~~~~e~~~~~~~~~ 449 (465)
.+.+.+.++++|++++++.-++.+.+.+.
T Consensus 304 ~l~~fl~~~~~f~~~rv~~~~~~l~~~~~ 332 (341)
T 3q8k_A 304 ELIKFMCGEKQFSEERIRSGVKRLSKSRQ 332 (341)
T ss_dssp HHHHHHTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 66788889999999999999888876665
No 234
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=50.71 E-value=15 Score=33.72 Aligned_cols=58 Identities=7% Similarity=-0.042 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH-HHhhhhcC
Q 012358 74 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQ 143 (465)
Q Consensus 74 ~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~-~l~~~~g~ 143 (465)
..+.+...+.|+++++ ++|+++.. + . .|.+. +|+ ++.+|.||.|+|.... .+.+..|.
T Consensus 178 ~~~~~~l~~~gv~i~~-~~v~~i~~--~--~--~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~~~~g~ 236 (297)
T 3fbs_A 178 ADQHALLAARGVRVET-TRIREIAG--H--A--DVVLA---DGR--SIALAGLFTQPKLRITVDWIEKLGC 236 (297)
T ss_dssp HHHHHHHHHTTCEEEC-SCEEEEET--T--E--EEEET---TSC--EEEESEEEECCEEECCCSCHHHHTC
T ss_pred HHHHHHHHHCCcEEEc-ceeeeeec--C--C--eEEeC---CCC--EEEEEEEEEccCcccCchhHHhcCC
Confidence 4455666789999996 88998853 2 2 45554 354 6999999999997632 45555554
No 235
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=49.11 E-value=14 Score=36.52 Aligned_cols=45 Identities=22% Similarity=0.161 Sum_probs=34.3
Q ss_pred HHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 79 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 79 ~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
...+.|++++.+++|+.+..... .|.+. +|+ ++.+|.||+|+|..
T Consensus 66 ~~~~~~i~~~~~~~v~~id~~~~-----~v~~~---~g~--~~~~d~lvlAtG~~ 110 (410)
T 3ef6_A 66 WYGEARIDMLTGPEVTALDVQTR-----TISLD---DGT--TLSADAIVIATGSR 110 (410)
T ss_dssp HHHHTTCEEEESCCEEEEETTTT-----EEEET---TSC--EEECSEEEECCCEE
T ss_pred HHHHCCCEEEeCCEEEEEECCCC-----EEEEC---CCC--EEECCEEEEccCCc
Confidence 34568999999999999976542 34543 354 69999999999975
No 236
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=48.65 E-value=24 Score=35.57 Aligned_cols=53 Identities=19% Similarity=0.105 Sum_probs=32.7
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC-------CCCcEEEEEccEEEEccCCCh
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN-------LSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~-------~tg~~~~i~a~~VVnAaG~wa 134 (465)
+...+.++|++++.++.+. .+.+ . +.|.+.+. .+|+..++++|.||+|+|.+.
T Consensus 101 ~~~~~~~~gv~~~~g~~~~---~~~~--~-v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p 160 (482)
T 1ojt_A 101 LAGMAKSRKVDVIQGDGQF---LDPH--H-LEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRV 160 (482)
T ss_dssp HHHHHHHTTCEEEEEEEEE---EETT--E-EEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEE
T ss_pred HHHHHHhCCcEEEeeEEEE---ccCC--E-EEEEecCCcccccccccCcceEEEcCEEEECCCCCC
Confidence 4445567899999887654 2232 2 33433220 012234799999999999974
No 237
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=48.38 E-value=36 Score=31.43 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=40.6
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+++..+...+...+.+.|.++...+ |.......+ . ..+.+. .+. ++.++.||+|+|..
T Consensus 63 i~~~~l~~~~~~~~~~~~~~~~~~~-v~~~~~~~~--~-~~~~~~---~~~--~~~~~~liiATG~~ 120 (314)
T 4a5l_A 63 IDGNELMMNMRTQSEKYGTTIITET-IDHVDFSTQ--P-FKLFTE---EGK--EVLTKSVIIATGAT 120 (314)
T ss_dssp EEHHHHHHHHHHHHHHTTCEEECCC-EEEEECSSS--S-EEEEET---TCC--EEEEEEEEECCCEE
T ss_pred CCHHHHHHHHHHHHhhcCcEEEEeE-EEEeecCCC--c-eEEEEC---CCe--EEEEeEEEEccccc
Confidence 5677888888888999999987654 666655443 2 223322 233 79999999999963
No 238
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=47.92 E-value=14 Score=39.58 Aligned_cols=61 Identities=13% Similarity=-0.058 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCCCEEEcceeEE--EEEEcCCCC--eEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 71 RLNVGLALTAALAGAAVLNHAEVI--SLIKDEASN--RIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 71 rl~~~l~~~A~~~Ga~i~~~t~V~--~i~~~~~g~--~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
.+..+|++.... |..|+.+++|+ .|...++|+ ....|++....+|+..++.||.||+|+-+
T Consensus 348 ~L~~aLa~~l~~-g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~ 412 (721)
T 3ayj_A 348 EFIRNLFLKAQN-VGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVPH 412 (721)
T ss_dssp HHHHHHHHHHHH-HTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECSCH
T ss_pred HHHHHHHHhccc-CCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECCCH
Confidence 566777766543 66677889999 998764320 01124442112465557999999998854
No 239
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=47.88 E-value=6.1 Score=39.10 Aligned_cols=54 Identities=19% Similarity=0.077 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 69 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 69 p~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
+..+.........+.|++++.+++|+.+...+. .|.+. +|+ ++.+|.+|+|+|.
T Consensus 64 ~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~-----~v~~~---~g~--~~~~d~lvlAtG~ 117 (415)
T 3lxd_A 64 FERICIRPAQFWEDKAVEMKLGAEVVSLDPAAH-----TVKLG---DGS--AIEYGKLIWATGG 117 (415)
T ss_dssp SGGGBSSCHHHHHHTTEEEEETCCEEEEETTTT-----EEEET---TSC--EEEEEEEEECCCE
T ss_pred HHHhccCCHHHHHHCCcEEEeCCEEEEEECCCC-----EEEEC---CCC--EEEeeEEEEccCC
Confidence 333333334455678999999999999976542 34443 354 6999999999995
No 240
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=46.82 E-value=31 Score=34.49 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=37.2
Q ss_pred CEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH-H-hhhhcC
Q 012358 85 AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS-V-RKLADQ 143 (465)
Q Consensus 85 a~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~-l-~~~~g~ 143 (465)
++++.+++|+++..++++ ++. |.+.+ .+|+..++.+|.||.|+|...+. + .+.+|.
T Consensus 226 v~i~~~~~v~~i~~~~~~-~v~-v~~~~-~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl 283 (466)
T 3l8k_A 226 LNIKFNSPVTEVKKIKDD-EYE-VIYST-KDGSKKSIFTNSVVLAAGRRPVIPEGAREIGL 283 (466)
T ss_dssp CCEECSCCEEEEEEEETT-EEE-EEECC-TTSCCEEEEESCEEECCCEEECCCTTTGGGTC
T ss_pred EEEEECCEEEEEEEcCCC-cEE-EEEEe-cCCceEEEEcCEEEECcCCCcccccchhhcCc
Confidence 999999999999875412 332 44431 13554579999999999986443 2 344444
No 241
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=45.25 E-value=17 Score=36.17 Aligned_cols=57 Identities=21% Similarity=0.079 Sum_probs=33.1
Q ss_pred chhHHHHHHHHHH-HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 68 NDSRLNVGLALTA-ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 68 dp~rl~~~l~~~A-~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
++..+.....+.. .+.|++++.+++|+.+...+ +.|.+ ++...++.+|.||+|+|..
T Consensus 56 ~~~~~~~~~~~~~~~~~gi~v~~~~~v~~i~~~~-----~~v~~----~~g~~~~~~d~lviAtG~~ 113 (449)
T 3kd9_A 56 TPDKLMYYPPEVFIKKRGIDLHLNAEVIEVDTGY-----VRVRE----NGGEKSYEWDYLVFANGAS 113 (449)
T ss_dssp ----------CTHHHHTTCEEETTCEEEEECSSE-----EEEEC----SSSEEEEECSEEEECCCEE
T ss_pred CHHHhhhcCHHHHHHhcCcEEEecCEEEEEecCC-----CEEEE----CCceEEEEcCEEEECCCCC
Confidence 3344443333333 57899999999999985421 23432 2333479999999999963
No 242
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=45.13 E-value=14 Score=36.30 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=33.4
Q ss_pred HHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 80 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 80 A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+.+.|++++.+++|+.+..++. .|.+. +|+ ++.+|.||+|+|..
T Consensus 69 ~~~~~v~~~~~~~v~~i~~~~~-----~v~~~---~g~--~~~~d~lviAtG~~ 112 (408)
T 2gqw_A 69 KRAPEVEWLLGVTAQSFDPQAH-----TVALS---DGR--TLPYGTLVLATGAA 112 (408)
T ss_dssp TTSCSCEEEETCCEEEEETTTT-----EEEET---TSC--EEECSEEEECCCEE
T ss_pred HHHCCCEEEcCCEEEEEECCCC-----EEEEC---CCC--EEECCEEEECCCCC
Confidence 3567999999999999976432 35553 354 69999999999984
No 243
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=42.21 E-value=6.6 Score=38.45 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=40.8
Q ss_pred HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHHHhhhhcC
Q 012358 81 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 143 (465)
Q Consensus 81 ~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~l~~~~g~ 143 (465)
.+.|++++.+++|..+..++++ ..|.+. +|+ ++.+|.||.|+|.-++.+.+..+.
T Consensus 213 ~~~gi~v~~~~~v~~v~~~~~~---~~v~~~---~g~--~i~~D~vi~~~g~~~~~~~~~~gl 267 (401)
T 3vrd_B 213 ENALIEWHPGPDAAVVKTDTEA---MTVETS---FGE--TFKAAVINLIPPQRAGKIAQSASL 267 (401)
T ss_dssp TTCSEEEECTTTTCEEEEETTT---TEEEET---TSC--EEECSEEEECCCEEECHHHHHTTC
T ss_pred HhcCcEEEeCceEEEEEecccc---eEEEcC---CCc--EEEeeEEEEecCcCCchhHhhccc
Confidence 4679999999999988776542 235543 365 699999999999877777666554
No 244
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=41.08 E-value=34 Score=36.64 Aligned_cols=54 Identities=11% Similarity=-0.071 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCC------------------CcEEEEEccEEEEccCCCh
Q 012358 74 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLS------------------GKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 74 ~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~t------------------g~~~~i~a~~VVnAaG~wa 134 (465)
..+.+...+.|++++.+++|++|.. + . +.+....+ |++.++.||.||.|+|.-.
T Consensus 575 ~~~~~~l~~~GV~i~~~~~v~~i~~--~--~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p 646 (729)
T 1o94_A 575 PNMMRRLHELHVEELGDHFCSRIEP--G--R---MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHS 646 (729)
T ss_dssp HHHHHHHHHTTCEEECSEEEEEEET--T--E---EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEE
T ss_pred HHHHHHHHhCCCEEEcCcEEEEEEC--C--e---EEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCC
Confidence 3455556789999999999999863 2 2 22221111 1223499999999999754
No 245
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=40.69 E-value=10 Score=37.23 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=33.7
Q ss_pred HHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCC
Q 012358 77 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 132 (465)
Q Consensus 77 ~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~ 132 (465)
.....+.|++++. ++|+.+..++. .|.+. +|+ ++.+|.+|+|+|.
T Consensus 64 ~~~~~~~~i~~~~-~~v~~id~~~~-----~v~~~---~g~--~~~~d~lvlAtG~ 108 (404)
T 3fg2_P 64 EKFFQDQAIELIS-DRMVSIDREGR-----KLLLA---SGT--AIEYGHLVLATGA 108 (404)
T ss_dssp HHHHHHTTEEEEC-CCEEEEETTTT-----EEEES---SSC--EEECSEEEECCCE
T ss_pred HHHHHhCCCEEEE-EEEEEEECCCC-----EEEEC---CCC--EEECCEEEEeeCC
Confidence 3445678999998 99999976542 35553 354 6899999999996
No 246
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=39.87 E-value=14 Score=37.51 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=33.3
Q ss_pred HhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 81 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 81 ~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.+.|++++.+++|+++...+. .|.+. +|+ ++.+|.||+|+|...
T Consensus 101 ~~~gv~~~~g~~v~~id~~~~-----~V~~~---~g~--~i~yd~lviATGs~p 144 (493)
T 1m6i_A 101 ENGGVAVLTGKKVVQLDVRDN-----MVKLN---DGS--QITYEKCLIATGGTP 144 (493)
T ss_dssp TTCEEEEEETCCEEEEEGGGT-----EEEET---TSC--EEEEEEEEECCCEEE
T ss_pred hcCCeEEEcCCEEEEEECCCC-----EEEEC---CCC--EEECCEEEECCCCCC
Confidence 357999999999999986542 35553 354 699999999999743
No 247
>4evu_A Putative periplasmic protein YDGH; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MSE; 1.45A {Salmonella enterica subsp}
Probab=39.60 E-value=45 Score=24.37 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=38.6
Q ss_pred CceeeCHHHHHHhCCCccccccccCceEEEEecCeeEchhHHHHHHHHHHHhCCCEEEcceeEEEE
Q 012358 31 LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISL 96 (465)
Q Consensus 31 ~~~~l~~~el~~~~P~l~~~~~~~~l~ga~~~~dg~vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i 96 (465)
.++.|+++|+..+.|. |.+.+..-.-.|..+..+|.+.|.+.||..+. |++.
T Consensus 5 ~v~ei~~~qA~~lq~~-----------gtVsvsg~~~sp~D~~~~lskkAdekGA~~y~---Ii~~ 56 (72)
T 4evu_A 5 KVEELNKATAAMMVPF-----------DSVKFTGNYGNMTEISYQVAKRAAKKGAKYYH---ITRQ 56 (72)
T ss_dssp CCEECCHHHHTTSCCS-----------EEEEEEECCSSHHHHHHHHHHHHHHTTCSEEE---EEEE
T ss_pred EeEEeCHHHHhhCeec-----------cEEEECCccCChHHHHHHHHHHHHHcCCCEEE---EEEe
Confidence 5788999999877663 44554433347889999999999999999663 5544
No 248
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=38.58 E-value=39 Score=33.44 Aligned_cols=55 Identities=11% Similarity=-0.019 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEEC-CCCc---EEEEEccEEEEccCCC
Q 012358 72 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN-LSGK---EFDTYAKVVVNAAGPF 133 (465)
Q Consensus 72 l~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~-~tg~---~~~i~a~~VVnAaG~w 133 (465)
+...+.+...++|++++.+++|+++.. + . +.+.+. .+|+ ..++.+|.||.|+|.-
T Consensus 210 ~~~~~~~~l~~~gI~~~~~~~v~~v~~--~--~---v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~ 268 (437)
T 3sx6_A 210 SKGILTKGLKEEGIEAYTNCKVTKVED--N--K---MYVTQVDEKGETIKEMVLPVKFGMMIPAFK 268 (437)
T ss_dssp HHHHHHHHHHHTTCEEECSEEEEEEET--T--E---EEEEEECTTSCEEEEEEEECSEEEEECCEE
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEC--C--e---EEEEecccCCccccceEEEEeEEEEcCCCc
Confidence 445555666789999999999999853 2 2 333221 1232 3579999999998854
No 249
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=37.85 E-value=18 Score=36.43 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=32.1
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEE------EEccEEEEccCCCh
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFD------TYAKVVVNAAGPFC 134 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~------i~a~~VVnAaG~wa 134 (465)
+...+.+.|++++.++.+.. +. .-+.|.+. +|+..+ +.+|.||+|+|.+.
T Consensus 102 ~~~~~~~~gv~~~~g~~~~~---~~---~~v~V~~~---~G~~~~~~~~~~i~~d~lViAtGs~p 157 (478)
T 1v59_A 102 IELLFKKNKVTYYKGNGSFE---DE---TKIRVTPV---DGLEGTVKEDHILDVKNIIVATGSEV 157 (478)
T ss_dssp HHHHHHHTTCEEEESEEEES---SS---SEEEEECC---TTCTTCCSSCEEEEEEEEEECCCEEE
T ss_pred HHHHHHhCCCEEEEEEEEEc---cC---CeEEEEec---CCCcccccccceEEeCEEEECcCCCC
Confidence 44556678999998887642 32 22334332 241124 99999999999876
No 250
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=37.22 E-value=18 Score=37.40 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=32.2
Q ss_pred HHHHHhCCCEEEc--ceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 77 ALTAALAGAAVLN--HAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 77 ~~~A~~~Ga~i~~--~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.++..+.+++++. .+.|..|.. + ||.+.| | ++.+|.||.|||.-+
T Consensus 345 ~~al~~~nV~lv~~~~~~I~~it~--~-----gv~~~d---G---~~~~D~IV~ATGf~~ 391 (545)
T 3uox_A 345 YETYNRDNVHLVDIREAPIQEVTP--E-----GIKTAD---A---AYDLDVIIYATGFDA 391 (545)
T ss_dssp HHHTTSTTEEEEETTTSCEEEEET--T-----EEEESS---C---EEECSEEEECCCCBS
T ss_pred HHHhcCCCEEEEecCCCCceEEcc--C-----eEEeCC---C---eeecCEEEECCcccc
Confidence 4444556888885 678888753 2 466643 5 689999999999864
No 251
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=36.98 E-value=43 Score=33.35 Aligned_cols=51 Identities=10% Similarity=0.074 Sum_probs=32.6
Q ss_pred HHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 75 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 75 ~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
.+...+.+.|++++.++.+. .+.+ . +.|.+. +|+..++.+|.||.|+|...
T Consensus 96 ~l~~~~~~~gv~~~~g~~~~---id~~--~-v~V~~~---~G~~~~~~~d~lViAtG~~~ 146 (464)
T 2a8x_A 96 GVHFLMKKNKITEIHGYGTF---ADAN--T-LLVDLN---DGGTESVTFDNAIIATGSST 146 (464)
T ss_dssp HHHHHHHHTTCEEECEEEEE---SSSS--E-EEEEET---TSCCEEEEEEEEEECCCEEE
T ss_pred HHHHHHHhCCCEEEEeEEEE---ecCC--e-EEEEeC---CCceEEEEcCEEEECCCCCC
Confidence 34555667899999887653 2332 2 233332 35224799999999999864
No 252
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=33.96 E-value=52 Score=31.72 Aligned_cols=44 Identities=20% Similarity=0.155 Sum_probs=32.9
Q ss_pred HHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 79 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 79 ~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
.+.+.|++++.+++|+.+...+. .|.+. +. ++.+|.||+|+|..
T Consensus 69 ~~~~~~v~~~~~~~v~~i~~~~~-----~v~~~----~~--~~~~d~lviAtG~~ 112 (384)
T 2v3a_A 69 MAEQLNARILTHTRVTGIDPGHQ-----RIWIG----EE--EVRYRDLVLAWGAE 112 (384)
T ss_dssp HHHHTTCEEECSCCCCEEEGGGT-----EEEET----TE--EEECSEEEECCCEE
T ss_pred HHHhCCcEEEeCCEEEEEECCCC-----EEEEC----Cc--EEECCEEEEeCCCC
Confidence 34678999998999999876442 24442 32 69999999999974
No 253
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=33.93 E-value=40 Score=32.64 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=31.9
Q ss_pred HHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 80 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 80 A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
...+|++++. .+|++|..+++ .|.+. +|. ++..|.+|+|+|...
T Consensus 65 ~~~~gv~~i~-~~v~~id~~~~-----~v~~~---~g~--~i~yd~LviAtG~~~ 108 (401)
T 3vrd_B 65 LRAHGIQVVH-DSALGIDPDKK-----LVKTA---GGA--EFAYDRCVVAPGIDL 108 (401)
T ss_dssp HHHTTCEEEC-SCEEEEETTTT-----EEEET---TSC--EEECSEEEECCCEEE
T ss_pred HHHCCCEEEE-eEEEEEEccCc-----EEEec---ccc--eeecceeeeccCCcc
Confidence 3468999886 47999987542 24443 354 799999999999753
No 254
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=33.45 E-value=1.1e+02 Score=29.68 Aligned_cols=89 Identities=12% Similarity=0.138 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHhCccHHHHHHHHhccCCCCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhH
Q 012358 341 VMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALP 420 (465)
Q Consensus 341 ~~~~~~~~~l~~~yG~~a~~v~~~~~~~~~~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~ 420 (465)
++-++.+-.|+..||+-- .|++.+ +.. ..++.-.+|+.+-.++-+.. |. .+-|. .--.+
T Consensus 258 GIG~KtA~kLl~~~gsle-~il~~~---~~~-----~~~~~~~~~~~~f~~p~v~~--~~-----~~~w~-----~pd~~ 316 (363)
T 3ory_A 258 GIGPKKALQLVKAYGGIE-KIPKPI---LKS-----PIEVDVIAIKKYFLQPQVTD--NY-----RIEWH-----TPDPD 316 (363)
T ss_dssp TCCHHHHHHHHHHHTSST-TSCGGG---CCC-----SSCCCHHHHHHHHHSCCCCS--CC-----CCCCC-----CCCHH
T ss_pred CcCHHHHHHHHHHcCCHH-HHHHhc---ccc-----cCCCCHHHHHHHhcCCCCCC--CC-----CCCCC-----CCCHH
Confidence 488899999999999853 222211 100 11223468888888876654 32 23342 23355
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 012358 421 RIIEIMATEHKWDKSRRKQELQKAKEFLET 450 (465)
Q Consensus 421 ~v~~~~a~~lgw~~~~~~~e~~~~~~~~~~ 450 (465)
.+.+.|.+++|||++|+..-++.+.+.+..
T Consensus 317 ~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~ 346 (363)
T 3ory_A 317 AVKRILVDEHDFSIDRVSTALERYVKAFKE 346 (363)
T ss_dssp HHHHHHTTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHhcc
Confidence 677999999999999999999888777765
No 255
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=33.18 E-value=1.1e+02 Score=30.05 Aligned_cols=49 Identities=8% Similarity=-0.050 Sum_probs=31.3
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+...+.++|++++.++.+. + +.+ . +.|.+. +|. .++.+|.||+|+|...
T Consensus 97 ~~~~~~~~gv~~~~g~~~~-i--d~~--~-v~V~~~---~G~-~~i~~d~lViATGs~p 145 (455)
T 1ebd_A 97 VEGLLKGNKVEIVKGEAYF-V--DAN--T-VRVVNG---DSA-QTYTFKNAIIATGSRP 145 (455)
T ss_dssp HHHHHHTTTCEEEESEEEE-E--ETT--E-EEEEET---TEE-EEEECSEEEECCCEEE
T ss_pred HHHHHHhCCCEEEEEEEEE-c--cCC--e-EEEEeC---CCc-EEEEeCEEEEecCCCC
Confidence 4455667899999887653 3 232 2 233321 231 3799999999999753
No 256
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=32.81 E-value=1.7e+02 Score=27.91 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHhCccHHHHHHHHhccCCCCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhH
Q 012358 341 VMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALP 420 (465)
Q Consensus 341 ~~~~~~~~~l~~~yG~~a~~v~~~~~~~~~~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~ 420 (465)
++-++.+-.|+..||+-. .|++ .++ .+.-.+++.+..+..+....| +-+. ..-.+
T Consensus 244 GiG~ktA~kli~~~gsle-~il~---~~~---------~~~~~~~~~~~~~~~v~d~~~-------~~~~-----~pd~~ 298 (340)
T 1b43_A 244 GIGLKKALEIVRHSKDPL-AKFQ---KQS---------DVDLYAIKEFFLNPPVTDNYN-------LVWR-----DPDEE 298 (340)
T ss_dssp TCCHHHHHHHHHTCSSGG-GGTG---GGC---------SSCHHHHHHHHHSCCCCCCCC-------CCCC-----CCCHH
T ss_pred CccHHHHHHHHHHcCCHH-HHHc---CCC---------CccHHHHHHHHhCCCCCCccc-------CCCC-----CCCHH
Confidence 378899999999999842 2222 221 111235666777764443222 2221 12345
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccccccccc
Q 012358 421 RIIEIMATEHKWDKSRRKQELQKAKEFLETFKSSKNKQFH 460 (465)
Q Consensus 421 ~v~~~~a~~lgw~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 460 (465)
.+.+.+.++++|+++++...++.+.+..+...|++=.+|.
T Consensus 299 ~l~~~~~~~~~f~~~rv~~~~~~~~~~~~~~~q~~l~~~f 338 (340)
T 1b43_A 299 GILKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWF 338 (340)
T ss_dssp HHHHHHTTTTCCCHHHHHHHHHHHHHHHHHTTGGGCCSSC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCCCCHHHhh
Confidence 6678888999999999999998887776655555444443
No 257
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=32.65 E-value=6.9 Score=38.90 Aligned_cols=47 Identities=26% Similarity=0.213 Sum_probs=33.0
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+...+.+.|++++. .+|+.+..+++ .|.+. +|+ ++.+|.||+|+|..
T Consensus 62 ~~~~~~~~gv~~~~-~~v~~id~~~~-----~v~~~---~g~--~i~~d~liiAtG~~ 108 (430)
T 3h28_A 62 LAPLLPKFNIEFIN-EKAESIDPDAN-----TVTTQ---SGK--KIEYDYLVIATGPK 108 (430)
T ss_dssp STTTGGGGTEEEEC-SCEEEEETTTT-----EEEET---TCC--EEECSEEEECCCCE
T ss_pred HHHHHHhcCCEEEE-EEEEEEECCCC-----EEEEC---CCc--EEECCEEEEcCCcc
Confidence 33344568999986 58999876432 34443 344 69999999999986
No 258
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=30.56 E-value=13 Score=38.28 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=30.8
Q ss_pred hCCCEEEc--ceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChHH
Q 012358 82 LAGAAVLN--HAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 136 (465)
Q Consensus 82 ~~Ga~i~~--~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~~ 136 (465)
+.+++++. .+.|..|.. + ||.+. +|+ ++.+|.||.|||.-+..
T Consensus 342 ~~nV~lv~~~~~~I~~it~--~-----gv~~~---dG~--~~~~DvIV~ATGf~~~~ 386 (540)
T 3gwf_A 342 RPNVEAVAIKENPIREVTA--K-----GVVTE---DGV--LHELDVLVFATGFDAVD 386 (540)
T ss_dssp STTEEEEETTTSCEEEECS--S-----EEEET---TCC--EEECSEEEECCCBSCSS
T ss_pred CCCEEEEeCCCCCccEEec--C-----eEEcC---CCC--EEECCEEEECCccCccc
Confidence 45788774 567887742 2 46665 365 68999999999997654
No 259
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=27.03 E-value=40 Score=31.22 Aligned_cols=63 Identities=8% Similarity=-0.021 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh-HHHhhhhcCC
Q 012358 74 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC-DSVRKLADQN 144 (465)
Q Consensus 74 ~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa-~~l~~~~g~~ 144 (465)
..+.+...+.|..+++++ |..+..++ + ++.+|++. +|+ ++.++.||+++|... ..++..+|.+
T Consensus 184 ~~~~~~l~~~g~~~~~~~-v~~~~~~~-~-~~~~v~~~---~g~--~i~~~~~vi~~g~~~~~~~~~~~g~~ 247 (304)
T 4fk1_A 184 QTIMDELSNKNIPVITES-IRTLQGEG-G-YLKKVEFH---SGL--RIERAGGFIVPTFFRPNQFIEQLGCE 247 (304)
T ss_dssp HHHHHHHHTTTCCEECSC-EEEEESGG-G-CCCEEEET---TSC--EECCCEEEECCEEECSSCHHHHTTCC
T ss_pred hhhhhhhhccceeEeeee-EEEeecCC-C-eeeeeecc---ccc--eeeecceeeeeccccCChhhhhcCeE
Confidence 345566677899998764 77776554 3 66677764 355 688888888887543 2344555554
No 260
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=26.82 E-value=62 Score=32.16 Aligned_cols=50 Identities=8% Similarity=0.060 Sum_probs=31.5
Q ss_pred HHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCCh
Q 012358 76 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 134 (465)
Q Consensus 76 l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa 134 (465)
+...+.++|++++.++.+. + +.+ . +.+.. .+|+..++++|.||+|+|...
T Consensus 102 ~~~~~~~~gv~~~~g~~~~-~--~~~--~---~~v~~-~~G~~~~i~~d~lIiAtGs~p 151 (470)
T 1dxl_A 102 IEGLFKKNKVTYVKGYGKF-V--SPS--E---ISVDT-IEGENTVVKGKHIIIATGSDV 151 (470)
T ss_dssp HHHHHHHHTCEEEESCEEE-E--ETT--E---EEECC-SSSCCEEEECSEEEECCCEEE
T ss_pred HHHHHHhCCCEEEEeEEEE-e--cCC--E---EEEEe-CCCceEEEEcCEEEECCCCCC
Confidence 3445566799999887654 3 232 2 33321 134224799999999999853
No 261
>1iyr_A DFF45, DNA fragmentation factor alpha subunit; apoptosis, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; NMR {Homo sapiens} SCOP: a.164.1.1 PDB: 1koy_A*
Probab=26.53 E-value=88 Score=24.29 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhccc
Q 012358 423 IEIMATEHKWDKSRRKQELQKAKEFLETFKSS 454 (465)
Q Consensus 423 ~~~~a~~lgw~~~~~~~e~~~~~~~~~~~~~~ 454 (465)
.+.|+..|+|+.++...-..++.++|..-.++
T Consensus 48 pkALa~aL~Wd~~kt~avqqAC~qELs~RlQQ 79 (111)
T 1iyr_A 48 PKALAVALNWDIKKTETVQEACERELALRLQQ 79 (111)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999988777777777654443
No 262
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=25.85 E-value=1.4e+02 Score=27.35 Aligned_cols=57 Identities=23% Similarity=0.088 Sum_probs=38.0
Q ss_pred EchhHHHHHHHHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 67 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 67 vdp~rl~~~l~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
+.+..+.........+.+..+.....+....... . . + +.. +++ ++.+|.||+|+|..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~-~-~~~--~~~--~~~~d~liiAtGs~ 115 (312)
T 4gcm_A 59 ITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGE-Y---K-V-INF--GNK--ELTAKAVIIATGAE 115 (312)
T ss_dssp BCHHHHHHHHHHHHHHTTCEEEECCCCEEEECSS-C---E-E-EEC--SSC--EEEEEEEEECCCEE
T ss_pred cchHHHHHHHHHHHhhccccccceeeeeeeeeec-c---e-e-ecc--CCe--EEEeceeEEcccCc
Confidence 4566777777777888888887766665554432 1 1 2 221 243 79999999999963
No 263
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=24.31 E-value=1.9e+02 Score=28.12 Aligned_cols=93 Identities=10% Similarity=0.068 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHhCccHHHHHHHHhccCCCCccccCCCccHHHHHHHHHhcccCChhHHHHhhcccCcCChHHHhhhhH
Q 012358 341 VMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALP 420 (465)
Q Consensus 341 ~~~~~~~~~l~~~yG~~a~~v~~~~~~~~~~~~v~~~~~~~~aEi~~ai~~E~a~~l~D~l~RRt~~~~~~~~~~~~~~~ 420 (465)
++-++.+-.|+..||+ ...|++.+.+ ....+....+ ..+++..+-+.-+....|+ .+-+.. .-.+
T Consensus 239 GIG~KtA~kLl~~~gs-le~i~~~~~~--~k~~~~~~~~--~~~ar~l~l~~~v~~~~~~-----~l~~~~-----pd~~ 303 (379)
T 1ul1_X 239 GIGPKRAVDLIQKHKS-IEEIVRRLDP--NKYPVPENWL--HKEAHQLFLEPEVLDPESV-----ELKWSE-----PNEE 303 (379)
T ss_dssp TCCHHHHHHHHHHSSS-HHHHHTTCCC--TTSCCCSSCC--HHHHHHHHHSCCCCCGGGC-----CCCCCC-----CCHH
T ss_pred CcCHHHHHHHHHHcCC-HHHHHHHHHh--hcccCCCcCC--HHHHHHHhcCCeeCCCCCc-----cCCCCC-----CCHH
Confidence 4788999999999998 3455443221 1112222222 2245555554444333331 233311 2234
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 012358 421 RIIEIMATEHKWDKSRRKQELQKAKEFL 448 (465)
Q Consensus 421 ~v~~~~a~~lgw~~~~~~~e~~~~~~~~ 448 (465)
.+.+.+.++++|+++++..-++.+...+
T Consensus 304 ~l~~fl~~~~~f~~~rv~~~~~rl~~~~ 331 (379)
T 1ul1_X 304 ELIKFMCGEKQFSEERIRSGVKRLSKSR 331 (379)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 5667789999999999998888776554
No 264
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=23.89 E-value=84 Score=31.21 Aligned_cols=48 Identities=15% Similarity=0.033 Sum_probs=30.4
Q ss_pred HHHHHhCCCEEEcceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCC
Q 012358 77 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 133 (465)
Q Consensus 77 ~~~A~~~Ga~i~~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~w 133 (465)
...+.+.|++++..+.+ .+ +.+ . +.+.. .+|+..++.+|.||+|+|..
T Consensus 100 ~~~~~~~~v~~~~g~~~-~i--~~~--~---~~v~~-~~G~~~~~~~d~lviAtG~~ 147 (468)
T 2qae_A 100 EYLFKKNKVTYYKGEGS-FE--TAH--S---IRVNG-LDGKQEMLETKKTIIATGSE 147 (468)
T ss_dssp HHHHHHHTCEEEEEEEE-EE--ETT--E---EEEEE-TTSCEEEEEEEEEEECCCEE
T ss_pred HHHHHhCCCEEEEEEEE-Ee--eCC--E---EEEEe-cCCceEEEEcCEEEECCCCC
Confidence 44556779999887754 23 232 2 33332 13533479999999999974
No 265
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=22.10 E-value=31 Score=35.58 Aligned_cols=42 Identities=10% Similarity=0.095 Sum_probs=29.3
Q ss_pred HhCCCEEE--cceeEEEEEEcCCCCeEEEEEEEECCCCcEEEEEccEEEEccCCChH
Q 012358 81 ALAGAAVL--NHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 135 (465)
Q Consensus 81 ~~~Ga~i~--~~t~V~~i~~~~~g~~v~gV~~~d~~tg~~~~i~a~~VVnAaG~wa~ 135 (465)
.+.++++. ..+.|..|.. + ||.+.| | ++.+|.||+|||.-+.
T Consensus 354 ~~~~V~lvd~~~~~I~~it~--~-----gv~~~d---G---~~~~D~iI~ATGf~~~ 397 (549)
T 4ap3_A 354 NRDNVELVDLRSTPIVGMDE--T-----GIVTTG---A---HYDLDMIVLATGFDAM 397 (549)
T ss_dssp GSTTEEEEETTTSCEEEEET--T-----EEEESS---C---EEECSEEEECCCEEES
T ss_pred cCCCEEEEeCCCCCceEEeC--C-----cEEeCC---C---ceecCEEEECCccccc
Confidence 34478877 2467887753 2 466643 5 6899999999998654
Done!