BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012359
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 171/392 (43%), Gaps = 61/392 (15%)
Query: 104 FILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCR 163
++D G +W C +Y +SS+ R + C+ +CS SI C
Sbjct: 37 LVVDLGGRFLWVDCDQNY----------------VSSTYRPVRCRTSQCSL--SGSIACG 78
Query: 164 DCNDEPLATSKNCT-QICPSYLVL---YGSGLTEGIALSETLN--LPNRII--PNFLVGC 215
DC + P N T + P V+ G + E + E+ + R++ P F+ C
Sbjct: 79 DCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSC 138
Query: 216 SVLSSRQ-----PAGIAGFGRGKTSLPSQLN-----LDKFSYCLLSHKFDDTTRTSSLIL 265
+ S Q G+AG GR + +LPSQ KF+ CL +T ++S+I+
Sbjct: 139 APTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCL-----SGSTSSNSVII 193
Query: 266 DNGSSH--------SDKKTTGLTYTPFVNNP----SVAERNAFSVYYYVGLRRITVGGQR 313
+ SDK LTYTP + NP + + + SV Y++G++ I + +
Sbjct: 194 FGNDPYTFLPNIIVSDKT---LTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKI 250
Query: 314 VRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEAL 373
V + L++ G GGT + + +T + +++ + + F+ + RN TR
Sbjct: 251 VALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAA-RNITRVASVAPF 309
Query: 374 TGLRPCFDVPGEKTG-SFPELKLHFKGGAEV-TLPVENYFAVVGEGSAVCLTVVTDREAS 431
++ + G S P + L + + V T+ N + + + VCL VV D ++
Sbjct: 310 GACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIND-NVVCLGVV-DGGSN 367
Query: 432 GGPSIILGNFQMQNYYVEYDLRNQRLGFKQQL 463
SI++G Q+++ V++DL R+GF L
Sbjct: 368 LRTSIVIGGHQLEDNLVQFDLATSRVGFSGTL 399
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 171/392 (43%), Gaps = 61/392 (15%)
Query: 104 FILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCR 163
++D G +W C +Y +SS+ R + C+ +CS SI C
Sbjct: 37 LVVDLGGRFLWVDCDQNY----------------VSSTYRPVRCRTSQCSL--SGSIACG 78
Query: 164 DCNDEPLATSKNCT-QICPSYLVL---YGSGLTEGIALSETLN--LPNRII--PNFLVGC 215
DC + P N T + P V+ G + E + E+ + R++ P F+ C
Sbjct: 79 DCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSC 138
Query: 216 SVLSSRQ-----PAGIAGFGRGKTSLPSQLN-----LDKFSYCLLSHKFDDTTRTSSLIL 265
+ S Q G+AG GR + +LPSQ KF+ CL +T ++S+I+
Sbjct: 139 APTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCL-----SGSTSSNSVII 193
Query: 266 DNGSSH--------SDKKTTGLTYTPFVNNP----SVAERNAFSVYYYVGLRRITVGGQR 313
+ SDK LTYTP + NP + + + SV Y++G++ I + +
Sbjct: 194 FGNDPYTFLPNIIVSDKT---LTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKI 250
Query: 314 VRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEAL 373
V + L++ G GGT + + +T + +++ + + F+ + RN TR
Sbjct: 251 VALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAA-RNITRVASVAPF 309
Query: 374 TGLRPCFDVPGEKTG-SFPELKLHFKGGAEV-TLPVENYFAVVGEGSAVCLTVVTDREAS 431
++ + G S P + L + + V T+ N + + + VCL VV D ++
Sbjct: 310 GACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIND-NVVCLGVV-DGGSN 367
Query: 432 GGPSIILGNFQMQNYYVEYDLRNQRLGFKQQL 463
SI++G Q+++ V++DL R+GF L
Sbjct: 368 LRTSIVIGGHQLEDNLVQFDLATSRVGFSGTL 399
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 158/388 (40%), Gaps = 72/388 (18%)
Query: 104 FILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLL-------GCQNPKCSWIH 156
+LD LVW C + P+ IP SS + LL GC P C
Sbjct: 26 LVLDVAGPLVW---------STCDGGQPPAEIP-CSSPTCLLANAYPAPGCPAPSCGSDK 75
Query: 157 HESIQCRDCNDEPL-ATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGC 215
H+ + C P S C S+ + + T+G +N+ L C
Sbjct: 76 HD----KPCTAYPYNPVSGACAAGSLSH-TRFVANTTDGSKPVSKVNV------GVLAAC 124
Query: 216 S---VLSS--RQPAGIAGFGRGKTSLPSQLN-----LDKFSYCLLSHKFDDTTRTSSLIL 265
+ +L+S R G+AG +LP+Q+ ++F CL T I
Sbjct: 125 APSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCL------PTGGPGVAIF 178
Query: 266 DNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDR 325
G + T + YTP V S +Y+ R I VG RV V L
Sbjct: 179 GGGPVPWPQFTQSMPYTPLVTK-------GGSPAHYISARSIVVGDTRVPVPEGALA--- 228
Query: 326 DGNGGTIVDSGTTFTFMAPELFEPLADEF----VSQMVKNRNYTRALGAEALTGLRPCFD 381
GG ++ + + + P+++ PL D F +Q RA+ A A G+ C+D
Sbjct: 229 --TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGV--CYD 284
Query: 382 VP--GEKTGSF--PELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGG---- 433
G G + P ++L GG++ T+ +N V +G+A C+ V + + G
Sbjct: 285 TKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTA-CVAFVEMKGVAAGDGRA 343
Query: 434 PSIILGNFQMQNYYVEYDLRNQRLGFKQ 461
P++ILG QM+++ +++D+ +RLGF +
Sbjct: 344 PAVILGGAQMEDFVLDFDMEKKRLGFSR 371
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 97/396 (24%), Positives = 156/396 (39%), Gaps = 88/396 (22%)
Query: 104 FILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLL-------GCQNPKCSWIH 156
+LD LVW C + P+ IP SS + LL GC P C
Sbjct: 26 LVLDVAGPLVW---------STCKGGQPPAEIP-CSSPTCLLANAYPAPGCPAPSCGSDK 75
Query: 157 HESIQCRDCNDEPL-ATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGC 215
H+ + C P S C S+ + + T+G +N+ L C
Sbjct: 76 HD----KPCTAYPYNPVSGACAAGSLSH-TRFVANTTDGSKPVSKVNV------GVLAAC 124
Query: 216 S---VLSS--RQPAGIAGFGRGKTSLPSQLN-----LDKFSYCLLSHKFDDTTRTSSLIL 265
+ +L+S R G+AG +LP+Q+ ++F CL T I
Sbjct: 125 APSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCL------PTGGPGVAIF 178
Query: 266 DNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDR 325
G + T + YTP V S +Y+ R I VG RV V L
Sbjct: 179 GGGPVPWPQFTQSMPYTPLVTK-------GGSPAHYISARSIVVGDTRVPVPEGALA--- 228
Query: 326 DGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRP------- 378
GG ++ + + + P+++ PL D F T+AL A+ G
Sbjct: 229 --TGGVMLSTRLPYVLLRPDVYRPLMDAF----------TKALAAQHANGAPVARAVVAV 276
Query: 379 -----CFDVP--GEKTGSF--PELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDRE 429
C+D G G + P ++L GG++ T+ +N V +G+A C+ V +
Sbjct: 277 APFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTA-CVAFVEMKG 335
Query: 430 ASGG----PSIILGNFQMQNYYVEYDLRNQRLGFKQ 461
+ G P++ILG QM+++ +++D+ +RLGF +
Sbjct: 336 VAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR 371
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/383 (23%), Positives = 150/383 (39%), Gaps = 66/383 (17%)
Query: 104 FILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCR 163
+LD LVW C + S P+ + L+++ GC P C H+ +
Sbjct: 28 LVLDVAGLLVWSTCEGGQSPAEIACSS-PTCL--LANAYPAPGCPAPSCGSDRHD----K 80
Query: 164 DCNDEPLATSKNCTQICPS---YLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCS---V 217
C P S T C + + + + T+G +N+ L C+ +
Sbjct: 81 PCTAYP---SNPVTGACAAGSLFHTRFAANTTDGNKPVSEVNV------RVLAACAPSKL 131
Query: 218 LSS--RQPAGIAGFGRGKTSLPSQLN-----LDKFSYCLLSHKFDDTTRTSSLILDNGSS 270
L+S R G+AG +LPSQ+ +KF CL T I G
Sbjct: 132 LASLPRGSTGVAGLAGSGLALPSQVASAQKVPNKFLLCL------PTGGPGVAIFGGGPL 185
Query: 271 HSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGG 330
+ T + YTP V S +Y+ R I V RV + + L GG
Sbjct: 186 PWPQFTQSMDYTPLV-------AKGGSPAHYISARSIKVENTRVPISERALA-----TGG 233
Query: 331 TIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRP------CFDVP- 383
++ + + + +++ PL D F + A GA ++P C+D
Sbjct: 234 VMLSTRLPYVLLRRDVYRPLVDAFTKALAAQP----ANGAPVARAVKPVAPFELCYDTKT 289
Query: 384 -GEKTGSF--PELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGG----PSI 436
G G + P + L GG++ + +N V G+A C+ V + G P++
Sbjct: 290 LGNNPGGYWVPNVLLELDGGSDWAMTGKNSMVDVKPGTA-CVAFVEMKGVDAGDGSAPAV 348
Query: 437 ILGNFQMQNYYVEYDLRNQRLGF 459
ILG QM+++ +++D+ +RLGF
Sbjct: 349 ILGGAQMEDFVLDFDMEKKRLGF 371
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 348 EPLADEFVSQMV----KNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGAEV 403
E + D S MV + R +A+GA L ++ + +P EK + P + L GG
Sbjct: 122 EAIVDTGTSLMVGPVDEVRELQKAIGAVPL--IQGEYMIPCEKVSTLPAITLKL-GGKGY 178
Query: 404 TLPVENY-FAVVGEGSAVCLT--VVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFK 460
L E+Y V G +CL+ + D GP ILG+ + YY +D N R+GF
Sbjct: 179 KLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFA 238
Query: 461 Q 461
+
Sbjct: 239 E 239
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/391 (20%), Positives = 143/391 (36%), Gaps = 67/391 (17%)
Query: 97 TPPQIIPFILDTGSHLVWFPCTNHY-----QCKYCSSSKIPSFIPKLSSSSRLLGCQNPK 151
TP +P ++D + +W C Y Q +C S++ +++ + L C
Sbjct: 31 TPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQC-----SRANTHQCLSCPAAS 85
Query: 152 CSWIHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGS-GLTEGIALSETLNLPNRIIPN 210
H + C + P+ ++ L ++ + G T+ + P +P
Sbjct: 86 RPGCHKNT--CGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLG-------PLVTVPQ 136
Query: 211 FLVGC--SVLSS----RQPAGIAGFGRGKTSLPSQLN-----LDKFSYCLLSHKFDDTTR 259
FL C S L R G+AG G SLP+QL +F+ CL + T
Sbjct: 137 FLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYP----TS 192
Query: 260 TSSLILDNGSSHSDKKTT-----GLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRV 314
++I + ++ + L +TP Y V + I + V
Sbjct: 193 KGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTI--------TLQGEYNVRVNSIRINQHSV 244
Query: 315 RVWHKYL-TLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEAL 373
+K T+ +GGT++ + T + +++ F Q+ K + + A
Sbjct: 245 FPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQ----VKSVAP 300
Query: 374 TGLRPCFDVPGEKTGSFPELKLHF-KGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASG 432
GL CF+ K ++P + L K V V + CL V+ +G
Sbjct: 301 FGL--CFN--SNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVM-----NG 351
Query: 433 G----PSIILGNFQMQNYYVEYDLRNQRLGF 459
G I LG Q++ V +DL R+GF
Sbjct: 352 GMQPRAEITLGARQLEENLVVFDLARSRVGF 382
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 117/300 (39%), Gaps = 56/300 (18%)
Query: 185 VLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSSRQPA-----GIAGFG--------- 230
V YGSG G ++T+ L + IP +G ++SR GI G G
Sbjct: 61 VTYGSGSFSGTEYTDTVTLGSLTIPKQSIG---VASRDSGFDGVDGILGVGPVDLTVGTL 117
Query: 231 --RGKTSLPSQLNLDKFSYC-----LLSHKFDDTTRTSSL--ILDNGSSHSDKKTTGLTY 281
TS+P+ + + FS LL+ F+ TT SS L G++ S K T +TY
Sbjct: 118 SPHTSTSIPTVTD-NLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITY 176
Query: 282 TPFVN-NPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFT 340
TP + +P+ A Y G+ Q +R L IVD+GTT T
Sbjct: 177 TPITSTSPASA---------YWGIN------QSIRYGSSTSILSSTAG---IVDTGTTLT 218
Query: 341 FMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGG 400
+A + F + N R A+ L+ F G +T
Sbjct: 219 LIASDAFAKYKKATGAVADNNTGLLRLTTAQ-YANLQSLFFTIGGQT-------FELTAN 270
Query: 401 AEVTLPVENYFAVVGEGSAVCLTVVTDREASG-GPSIILGNFQMQNYYVEYDLRNQRLGF 459
A++ P A+ G S+V L V SG G I G ++ +Y YD N+RLG
Sbjct: 271 AQI-WPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGL 329
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 91/390 (23%), Positives = 136/390 (34%), Gaps = 111/390 (28%)
Query: 96 GTPPQIIPFILDTGSHLVWFP--------CTNHYQCKYCSSSKIPSFIPKLSSSSRLLGC 147
GTPPQ + DTGS +W P C NH++ F P+ SS+ R LG
Sbjct: 20 GTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHR-----------FDPRKSSTFRNLG- 67
Query: 148 QNPKCSWIHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRI 207
+PL+ + YG+G EG +T+ + N +
Sbjct: 68 --------------------KPLS-------------IHYGTGSMEGFLGYDTVTVSNIV 94
Query: 208 IPNFLVGCSVLSSRQPAGIAGF-------GRGKTSLPSQLNLDKFSYCLLSHKFDDTTRT 260
PN VG LS+ QP + + G SL S+ ++ F + H
Sbjct: 95 DPNQTVG---LSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHL------- 144
Query: 261 SSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSV------YYYVGLRRITVGGQRV 314
+ D S + D+ G T +PS + V Y+ + +T+ G V
Sbjct: 145 --VARDLFSVYMDRNGQGSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTINGVAV 202
Query: 315 RVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGA-EAL 373
G I+D+GT+ LF P +D QM A+GA E
Sbjct: 203 ACV---------GGCQAILDTGTSV------LFGPSSDILKIQM--------AIGATENR 239
Query: 374 TGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGG 433
G FDV S P + G P A + C + S
Sbjct: 240 YGE---FDVNCGNLRSMPTVVFEINGRDYPLSPS----AYTSKDQGFCTSGFQGDNNS-- 290
Query: 434 PSIILGNFQMQNYYVEYDLRNQRLGFKQQL 463
ILG+ ++ YY +D N R+G + +
Sbjct: 291 ELWILGDVFIREYYSVFDRANNRVGLAKAI 320
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 388 GSFPELKLHFKGGAEVTLPVENYFAVVGEGSAV-CLTVVT--DREASGGPSIILGNFQMQ 444
GS P+++ GG + L E Y VGEG+A C++ T D GP ILG+ M
Sbjct: 401 GSMPDIEFTI-GGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMG 459
Query: 445 NYYVEYDLRNQRLGFKQ 461
Y+ +D R+GF +
Sbjct: 460 PYHTVFDYGKLRIGFAK 476
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 96 GTPPQIIPFILDTGSHLVWFPCTNHYQCKYC 126
GTPPQ I DTGS +W P Y C
Sbjct: 61 GTPPQKFTVIFDTGSSNLWVPSAKCYFSIAC 91
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 371 EALTGLRPCFD--VPGEKTGSFPELKLHFKGGAEVTLPVENY-FAVVGEGSAVCLTVV-- 425
EAL + FD V + + P++ H GG E TL +Y F +C +
Sbjct: 287 EALGAKKRLFDYVVKCNEGPTLPDISFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHA 345
Query: 426 TDREASGGPSIILGNFQMQNYYVEYDLRNQRLGF 459
D GP+ LG ++ +Y E+D RN R+GF
Sbjct: 346 MDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGF 379
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 96 GTPPQIIPFILDTGSHLVWFP---CTNHY-QCKY 125
GTPPQ + DTGS VW P C+ Y C Y
Sbjct: 70 GTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVY 103
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 371 EALTGLRPCFD--VPGEKTGSFPELKLHFKGGAEVTLPVENY-FAVVGEGSAVCLTVV-- 425
EAL + FD V + + P++ H GG E TL +Y F +C +
Sbjct: 74 EALGAKKRLFDYVVKCNEGPTLPDISFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHA 132
Query: 426 TDREASGGPSIILGNFQMQNYYVEYDLRNQRLGF 459
D GP+ LG ++ +Y E+D RN R+GF
Sbjct: 133 MDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGF 166
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 371 EALTGLRPCFD--VPGEKTGSFPELKLHFKGGAEVTLPVENY-FAVVGEGSAVCLTVV-- 425
EAL + FD V + + P++ H GG E TL +Y F +C +
Sbjct: 244 EALGAKKRLFDYVVKCNEGPTLPDISFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHA 302
Query: 426 TDREASGGPSIILGNFQMQNYYVEYDLRNQRLGF 459
D GP+ LG ++ +Y E+D RN R+GF
Sbjct: 303 MDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGF 336
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 96 GTPPQIIPFILDTGSHLVWFP---CTNHY-QCKY 125
GTPPQ + DTGS VW P C+ Y C Y
Sbjct: 27 GTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVY 60
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 371 EALTGLRPCFD--VPGEKTGSFPELKLHFKGGAEVTLPVENY-FAVVGEGSAVCLTVV-- 425
EAL + FD V + + P++ H GG E TL +Y F +C +
Sbjct: 244 EALGAKKRLFDYVVKCNEGPTLPDISFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHA 302
Query: 426 TDREASGGPSIILGNFQMQNYYVEYDLRNQRLGF 459
D GP+ LG ++ +Y E+D RN R+GF
Sbjct: 303 MDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGF 336
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 96 GTPPQIIPFILDTGSHLVWFP---CTNHY-QCKY 125
GTPPQ + DTGS VW P C+ Y C Y
Sbjct: 27 GTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVY 60
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 371 EALTGLRPCFD--VPGEKTGSFPELKLHFKGGAEVTLPVENY-FAVVGEGSAVCLTVV-- 425
EAL + FD V + + P++ H GG E TL +Y F +C +
Sbjct: 240 EALGAKKRLFDYVVKCNEGPTLPDISFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHA 298
Query: 426 TDREASGGPSIILGNFQMQNYYVEYDLRNQRLGF 459
D GP+ LG ++ +Y E+D RN R+GF
Sbjct: 299 MDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGF 332
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 96 GTPPQIIPFILDTGSHLVWFP---CTNHY-QCKY 125
GTPPQ + DTGS VW P C+ Y C Y
Sbjct: 23 GTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVY 56
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 371 EALTGLRPCFD--VPGEKTGSFPELKLHFKGGAEVTLPVENY-FAVVGEGSAVCLTVV-- 425
EAL + FD V + + P++ H GG E TL +Y F +C +
Sbjct: 241 EALGAKKRLFDYVVKCNEGPTLPDISFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHA 299
Query: 426 TDREASGGPSIILGNFQMQNYYVEYDLRNQRLGF 459
D GP+ LG ++ +Y E+D RN R+GF
Sbjct: 300 MDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGF 333
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 96 GTPPQIIPFILDTGSHLVWFP---CTNHY-QCKY 125
GTPPQ + DTGS VW P C+ Y C Y
Sbjct: 24 GTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVY 57
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 371 EALTGLRPCFD--VPGEKTGSFPELKLHFKGGAEVTLPVENY-FAVVGEGSAVCLTVV-- 425
EAL + FD V + + P++ H GG E TL +Y F +C +
Sbjct: 237 EALGAKKRLFDYVVKCNEGPTLPDISFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHA 295
Query: 426 TDREASGGPSIILGNFQMQNYYVEYDLRNQRLGF 459
D GP+ LG ++ +Y E+D RN R+GF
Sbjct: 296 MDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGF 329
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 96 GTPPQIIPFILDTGSHLVWFP---CTNHY-QCKY 125
GTPPQ + DTGS VW P C+ Y C Y
Sbjct: 20 GTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVY 53
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 371 EALTGLRPCFD--VPGEKTGSFPELKLHFKGGAEVTLPVENY-FAVVGEGSAVCLTVV-- 425
EAL + FD V + + P++ H GG E TL +Y F +C +
Sbjct: 239 EALGAKKRLFDYVVKCNEGPTLPDISFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHA 297
Query: 426 TDREASGGPSIILGNFQMQNYYVEYDLRNQRLGF 459
D GP+ LG ++ +Y E+D RN R+GF
Sbjct: 298 MDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGF 331
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 96 GTPPQIIPFILDTGSHLVWFP---CTNHY-QCKY 125
GTPPQ + DTGS VW P C+ Y C Y
Sbjct: 27 GTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVY 60
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 272
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 273 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 328
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 329 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 217 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 271
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 272 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 327
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 328 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 205 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 259
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 260 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 315
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 316 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 366
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 221 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 275
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 276 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 331
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 332 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 382
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 202 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 256
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 257 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 312
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 313 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 217 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 271
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 272 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 327
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 328 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 204 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 258
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 259 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 314
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 315 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 201 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 255
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 256 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 311
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 312 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 362
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 217 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 271
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 272 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 327
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 328 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 190 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 244
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 245 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 300
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 301 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 351
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 203 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 257
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 258 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 313
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 314 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 364
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 202 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 256
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 257 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 312
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 313 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 199 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 253
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 254 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 309
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 310 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 360
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 202 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 256
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 257 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 312
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 313 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 202 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 256
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 257 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 312
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 313 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 219 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 273
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 274 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 329
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 330 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 380
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 272
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 273 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 328
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 329 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 202 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 256
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 257 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 312
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 313 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 204 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 258
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 259 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 314
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 315 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 207 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 261
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 262 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 317
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 318 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 368
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 214 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 268
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 269 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 324
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 325 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 216 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 270
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 271 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 326
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 327 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 377
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 214 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 268
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 269 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 324
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 325 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 204 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 258
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 259 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 314
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 315 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 272
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 273 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 328
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 329 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 215 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 269
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 270 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 325
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 326 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 376
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 238 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 292
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 293 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 348
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 349 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 399
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 214 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 268
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 269 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 324
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 325 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 272
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 273 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 328
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 329 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 272
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 273 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 328
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 329 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 214 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 268
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 269 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 324
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 325 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 207 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 261
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 262 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 317
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 318 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 368
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 224 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 278
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 279 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 334
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 335 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 385
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 219 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 273
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 274 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 329
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 330 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 380
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 261 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 315
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 316 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 371
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 372 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 261 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 315
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 316 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 371
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 372 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 260 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 314
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 315 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 370
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 371 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 421
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 201 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 255
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 256 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTQQSFRITILPQQYLRP 311
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 312 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 362
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 238 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 292
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 293 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 348
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 349 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 399
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 199 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 253
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 254 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTQQSFRITILPQQYLRP 309
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 310 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 360
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 198 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 252
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 253 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTQQSFRITILPQQYLRP 308
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 309 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 359
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 214 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVASIKAAS 268
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 269 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 324
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 325 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 68/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 272
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 273 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 328
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + + G ++G M+ +YV +D +R+GF C
Sbjct: 329 VEDVATSQDDCYKFAISQSSCG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 81/384 (21%), Positives = 142/384 (36%), Gaps = 101/384 (26%)
Query: 96 GTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWI 155
G+ Q + I+DTGS +W P +N C IPK W
Sbjct: 21 GSDNQKLNVIVDTGSSDLWIPDSNVI----C--------IPK----------------WR 52
Query: 156 HHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSG-LTEGIALSETLNLPNRIIPNFLVG 214
+ C+ A+S+ + + + YG G +G +T+ + + + L
Sbjct: 53 GDKGDFCKSAGSYSPASSRTSQNLNTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLF- 111
Query: 215 CSVLSSRQPAGIAGFG--RGKT----------SLPSQLNLDKFSYCLLSHKFDDTTRTSS 262
+V S+ GI G G G+ SL +Q + K +Y L + + T
Sbjct: 112 ANVWSTSARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAE--ASTGQ 169
Query: 263 LILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLT 322
+I G K + L P + + VGLR + V G+ V
Sbjct: 170 IIF--GGIDKAKYSGSLVDLPITSEKKLT----------VGLRSVNVRGRNV-------- 209
Query: 323 LDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDV 382
D N ++DSGTT ++ F +V+N Y A+GA+ FD
Sbjct: 210 ---DANTNVLLDSGTTISY------------FTRSIVRNILY--AIGAQM------KFDS 246
Query: 383 PGEKT-----GSFPELKLHFKGGAEVTLPVENY----FAVVGEGSAVCLTVVTDREASGG 433
G K + + F ++++PV + + G+ C + + E +
Sbjct: 247 AGNKVYVADCKTSGTIDFQFGNNLKISVPVSEFLFQTYYTSGKPFPKCEVRIRESEDN-- 304
Query: 434 PSIILGNFQMQNYYVEYDLRNQRL 457
ILG+ +++ YV Y+L ++++
Sbjct: 305 ---ILGDNFLRSAYVVYNLDDKKI 325
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 83/381 (21%), Positives = 131/381 (34%), Gaps = 91/381 (23%)
Query: 96 GTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWI 155
GTPPQ + DTGS +W P YC S +S SR NP S
Sbjct: 21 GTPPQNFLVLFDTGSSNLWVPSV------YCQSQAC-------TSHSRF----NPSESST 63
Query: 156 HHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGC 215
+ + Q ++ + YGSG G +TL + + +PN G
Sbjct: 64 YSTNGQ--------------------TFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFG- 102
Query: 216 SVLSSRQPA---------GIAGFG-------RGKTSLPSQLNLDKFSYCLLSHKFDDTTR 259
LS +P GI G T++ + + + S +
Sbjct: 103 --LSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQG 160
Query: 260 TSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHK 319
+S + G S T + + P +Y+ +G+ +GGQ +
Sbjct: 161 SSGGAVVFGGVDSSLYTGQIYWAPVTQE----------LYWQIGIEEFLIGGQASGWCSE 210
Query: 320 YLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPC 379
IVD+GT+ P+ +++S +++ T A E L C
Sbjct: 211 GCQ--------AIVDTGTSL-LTVPQ-------QYMSALLQA---TGAQEDEYGQFLVNC 251
Query: 380 FDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPSIILG 439
+ + P L G E LP +Y V + +G P ILG
Sbjct: 252 NSIQ-----NLPSLTFIING-VEFPLPPSSYILSNNGYCTVGVEPTYLSSQNGQPLWILG 305
Query: 440 NFQMQNYYVEYDLRNQRLGFK 460
+ +++YY YDL N R+GF
Sbjct: 306 DVFLRSYYSVYDLGNNRVGFA 326
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 82/393 (20%), Positives = 128/393 (32%), Gaps = 108/393 (27%)
Query: 95 FGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSW 154
GTPPQ ILDTGS +W P C S L C +
Sbjct: 21 LGTPPQNFKVILDTGSSNLWVPSNE------CGS----------------LAC------F 52
Query: 155 IH----HESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIP- 209
+H HE+ N A + YG+G EG +TL++ + IP
Sbjct: 53 LHSKYDHEASSSYKANGTEFA-------------IQYGTGSLEGYISQDTLSIGDLTIPK 99
Query: 210 -NFLVGCS----VLSSRQPAGIAGFGRGKTSLP------------SQLNLDKFSYCLLSH 252
+F S + + GI G G S+ L+ +F++ L
Sbjct: 100 QDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 253 KFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQ 312
D + G K +T+ P R A Y+ V I +G +
Sbjct: 160 SKDTENGGEATF---GGIDESKFKGDITWLP-------VRRKA---YWEVKFEGIGLGDE 206
Query: 313 RVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEA 372
+ G +D+GT+ + L E + E ++ YT
Sbjct: 207 YAELESH----------GAAIDTGTSLITLPSGLAEMINAEIGAKKGSTGQYTLDCNTRD 256
Query: 373 LTGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVT--DREA 430
+ P+L +F G P + V G C++ +T D
Sbjct: 257 ----------------NLPDLIFNFNGYNFTIGPYDYTLEVSGS----CISAITPMDFPE 296
Query: 431 SGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQL 463
GP I+G+ ++ YY YDL N +G + +
Sbjct: 297 PVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 68/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSGTT + ++FE +
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGTTNLRLPKKVFEAAVKSIKAAS 272
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 273 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 328
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G +G M+ +YV +D +R+GF C
Sbjct: 329 VEDVATSQDDCYKFAISQSSTG---TCMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 35.4 bits (80), Expect = 0.062, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 399 GGAEVTLPVENYFAVVGEGSAV-CLTVVTDREASG-GPSIILGNFQMQNYYVEYDLRNQR 456
GG + L E Y VG+G A C++ T +A+ GP ILG+ M+ Y+ +D N
Sbjct: 21 GGKKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNLL 80
Query: 457 LGFKQ 461
+GF +
Sbjct: 81 VGFAE 85
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 20/174 (11%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY V + R+ + GQ +++ K D+ +IVDSG T + ++FE +
Sbjct: 218 YYEVIIVRVEINGQDLKMDCKEYNYDK-----SIVDSGCTNLRLPKKVFEAAVKSIKAAS 272
Query: 359 VKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAV 413
+ E L C+ FP + L+ G +T+ + Y
Sbjct: 273 STEKFPDGFWLGEQLV----CWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRP 328
Query: 414 VGEGSAV---CLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
V + + C + ++G ++G M+ +YV +D +R+GF C
Sbjct: 329 VEDVATSQDDCYKFAISQSSTG---TVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 130/393 (33%), Gaps = 108/393 (27%)
Query: 95 FGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSW 154
GTPPQ ILDTGS +W P C S L C +
Sbjct: 21 LGTPPQNFKVILDTGSSNLWVPSNE------CGS----------------LAC------F 52
Query: 155 IH----HESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIP- 209
+H HE+ N A + YG+G EG +TL++ + IP
Sbjct: 53 LHSKYDHEASSSYKANGTEFA-------------IQYGTGSLEGYISQDTLSIGDLTIPK 99
Query: 210 -NFLVGCS----VLSSRQPAGIAGFGRGKTSLP------------SQLNLDKFSYCLLSH 252
+F S + + GI G G S+ L+ +F++ L
Sbjct: 100 QDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 253 KFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQ 312
D + G K +T+ P R A Y+ V I +G
Sbjct: 160 SKDTENGGEATF---GGIDESKFKGDITWLP-------VRRKA---YWEVKFEGIGLG-- 204
Query: 313 RVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEA 372
+Y L+ G +D+GT+ + L E + E ++ YT
Sbjct: 205 -----DEYAELESH---GAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNTRD 256
Query: 373 LTGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVT--DREA 430
+ P+L +F G P + V G C++ +T D
Sbjct: 257 ----------------NLPDLIFNFNGYNFTIGPYDYTLEVSGS----CISAITPMDFPE 296
Query: 431 SGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQL 463
GP I+G+ ++ YY YDL N +G + +
Sbjct: 297 PVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 328 NGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKT 387
N ++DSGTT T+ + + A V +RN L P D+ G+
Sbjct: 212 NADVVLDSGTTITYFSQSTADKFA-RIVGATWDSRNEIYRL---------PSCDLSGDAV 261
Query: 388 GSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPSIILGNFQMQNYY 447
+F G ++T+P+ + S++C ++ +A+ ILG+ ++ Y
Sbjct: 262 -------FNFDQGVKITVPLSE-LILKDSDSSICYFGISRNDAN-----ILGDNFLRRAY 308
Query: 448 VEYDLRNQRLGFKQ 461
+ YDL ++ + Q
Sbjct: 309 IVYDLDDKTISLAQ 322
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 96 GTPPQIIPFILDTGSHLVWFP---CTNHYQCK 124
GTPPQ I DTGS ++W P C N C+
Sbjct: 22 GTPPQKFTVIFDTGSSVLWVPSSKCINSKACR 53
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 80/376 (21%), Positives = 131/376 (34%), Gaps = 88/376 (23%)
Query: 96 GTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWI 155
GT Q FI DTGS +W P N C + CS
Sbjct: 23 GTNKQPFMFIFDTGSANLWVPSVN---------------------------CDSIGCSTK 55
Query: 156 HHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGC 215
H + K+ T++ SY GSG G + ++L + +P +
Sbjct: 56 HLYDASASK------SYEKDGTKVEISY----GSGTVRGYFSKDVISLGDLSLPYKFIEV 105
Query: 216 SVLSSRQPA-------GIAGFGRGKTSL----PSQLNLDKFSYCLLSHKFDDTTRTSSLI 264
+ +P GI G G S+ P + L K +K D+ T L
Sbjct: 106 TDADDLEPIYSGSEFDGILGLGWKDLSIGSIDPVVVELKK------QNKIDNALFTFYLP 159
Query: 265 LDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLD 324
+ + H T G + F P E+ +Y+ + L I G KY+
Sbjct: 160 VHD--KHVGYLTIGGIESDFYEGPLTYEKLNHDLYWQIDLD-IHFG--------KYVM-- 206
Query: 325 RDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPG 384
+VDSGT+ T AP F+++ ++ N + P + V
Sbjct: 207 --QKANAVVDSGTS-TITAPT-------SFLNKFFRDMNVIKV-------PFLPLY-VTT 248
Query: 385 EKTGSFPELKLHFKGGAEVTLPVENYFAVVGE-GSAVCLTVVTDREASGGPSIILGNFQM 443
P L+ H + + TL E Y + + A+C+ + + + ILG+ M
Sbjct: 249 CDNDDLPTLEFHSRNN-KYTLEPEFYMDPLSDIDPALCMLYILPVDIDDN-TFILGDPFM 306
Query: 444 QNYYVEYDLRNQRLGF 459
+ Y+ +D + +GF
Sbjct: 307 RKYFTVFDYEKESVGF 322
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 83/393 (21%), Positives = 130/393 (33%), Gaps = 108/393 (27%)
Query: 95 FGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSW 154
GTPPQ ILDTGS +W P C S L C +
Sbjct: 21 LGTPPQNFKVILDTGSSNLWVPSNE------CGS----------------LAC------F 52
Query: 155 IH----HESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIP- 209
+H HE+ N A + YG+G EG +TL++ + IP
Sbjct: 53 LHSKYDHEASSSYKANGTEFA-------------IQYGTGSLEGYISQDTLSIGDLTIPK 99
Query: 210 -NFLVGCS----VLSSRQPAGIAGFGRGKTSLP------------SQLNLDKFSYCLLSH 252
+F S + + GI G G S+ L+ +F++ L
Sbjct: 100 QDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 253 KFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQ 312
D + G K +T+ P R A Y+ V I +G
Sbjct: 160 SKDTENGGEATF---GGIDESKFKGDITWLP-------VRRKA---YWEVKFEGIGLG-- 204
Query: 313 RVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEA 372
+Y L+ G +D+GT+ + L E + E ++ YT
Sbjct: 205 -----DEYAELESH---GAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNTRD 256
Query: 373 LTGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVT--DREA 430
+ P+L +F G P + V G C++ +T D
Sbjct: 257 ----------------NLPDLIFNFNGYNFTIGPYDYTLEVSGS----CISAITPMDFPE 296
Query: 431 SGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQL 463
GP I+G+ ++ YY YD+ N +G + +
Sbjct: 297 PVGPLAIVGDAFLRKYYSIYDIGNNAVGLAKAI 329
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 306 RITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYT 365
RI++G V V K + D N ++DSGTT T++ +L + + F ++ ++ N
Sbjct: 195 RISLG--SVEVSGKTINTD---NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNG- 248
Query: 366 RALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVV----GEGSAVC 421
++V +G ++ +F A++++P ++ A G+ C
Sbjct: 249 -----------NSFYEVDCNLSG---DVVFNFSKNAKISVPASDFAASTQGDDGQPYDKC 294
Query: 422 LTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQ 461
+ +A+ ILG+ +++ Y+ YDL + + Q
Sbjct: 295 QLLFDVNKAN-----ILGDNFLRSAYIVYDLDDNEISIAQ 329
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 306 RITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYT 365
RI++G V V K + D N ++DSGTT T++ +L + + F ++ ++ N
Sbjct: 195 RISLG--SVEVSGKTINTD---NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNG- 248
Query: 366 RALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVV----GEGSAVC 421
++V +G ++ +F A++++P + A + G+ C
Sbjct: 249 -----------NSFYEVDCNLSG---DVVFNFSKNAKISVPASEFAASLQGDDGQPYDKC 294
Query: 422 LTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQ 461
+ +A+ ILG+ +++ Y+ YDL + + Q
Sbjct: 295 QLLFDVNDAN-----ILGDNFLRSAYIVYDLDDNEISLAQ 329
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 47/165 (28%)
Query: 95 FGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSW 154
GTPPQ + DTGS W P CK + F P+ SS+ + LG
Sbjct: 22 LGTPPQEFTVLFDTGSSDFWVPSI---YCKSNACKNHQRFDPRKSSTFQNLG-------- 70
Query: 155 IHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVG 214
+PL+ + YG+G +GI +T+ + N + VG
Sbjct: 71 -------------KPLS-------------IHYGTGSMQGILGYDTVTVSNIVDIQQTVG 104
Query: 215 CSVLSSRQPAGIAGF-------GRGKTSLPSQLNLDKFSYCLLSH 252
LS+++P + + G SL S+ ++ F + H
Sbjct: 105 ---LSTQEPGDVFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRH 146
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 402 EVTLPVENYFAVVGEGSAVCLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGF 459
E+++PV V + + C+ ++ GG I+GN ++ + YD N R+GF
Sbjct: 297 EISVPVSKMLLPVDQSNETCMFIIL---PDGGNQYIVGNLFLRFFVNVYDFGNNRIGF 351
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 64/140 (45%), Gaps = 24/140 (17%)
Query: 326 DGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGE 385
+GN ++DSGTT T++ ++ + + D F +++ + G F V
Sbjct: 209 NGNIDVLLDSGTTITYLQQDVAQDIIDAFQAELKSD-------------GQGHTFYVTDC 255
Query: 386 KTGSFPELKLHFKGGAEVTLPVENYFAVV----GEGSAVCLTVVTDREASGGPSIILGNF 441
+T + +F A++++P + A + G+ C ++ +A+ ILG+
Sbjct: 256 QTSG--TVDFNFDNNAKISVPASEFTAPLSYANGQPYPKCQLLLGISDAN-----ILGDN 308
Query: 442 QMQNYYVEYDLRNQRLGFKQ 461
+++ Y+ YDL + ++ Q
Sbjct: 309 FLRSAYLVYDLDDDKISLAQ 328
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 20/132 (15%)
Query: 330 GTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGS 389
G ++DSGTT T+ + LAD+ +++V+ + + C T +
Sbjct: 216 GALLDSGTTLTYFPSDFAAQLADKAGARLVQ-------VARDQYLYFIDC------NTDT 262
Query: 390 FPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPSIILGNFQMQNYYVE 449
+F GA++T+P Y G+G+ CL + + + ILG+ +++ Y+
Sbjct: 263 SGTTVFNFGNGAKITVPNTEYVYQNGDGT--CLWGIQPSDDT-----ILGDNFLRHAYLL 315
Query: 450 YDLRNQRLGFKQ 461
Y+L + Q
Sbjct: 316 YNLDANTISIAQ 327
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 96 GTPPQIIPFILDTGSHLVWFP---CTNHY-QCKY 125
GTPPQ + DTGS VW P C+ Y C Y
Sbjct: 27 GTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVY 60
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 95 FGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLG 146
GTPPQ + DTGS W P CK + F P+ SS+ + LG
Sbjct: 22 LGTPPQEFTVLFDTGSSDFWVPSI---YCKSNACKNHQRFDPRKSSTFQNLG 70
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 95 FGTPPQIIPFILDTGSHLVWFPCTN 119
GTPPQ I DTGS +W P T
Sbjct: 23 IGTPPQTFKVIFDTGSANLWVPSTK 47
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 433 GPSIILGNFQMQNYYVEYDLRNQRLGF 459
GP +LG ++ +Y E+D N R+GF
Sbjct: 305 GPVWVLGATFIRKFYTEFDRHNNRIGF 331
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 21/139 (15%)
Query: 326 DGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLR-PCFDVPG 384
DG +D+GT F F+AP F A++ V + + E+ G PC
Sbjct: 229 DGAQAFTIDTGTNF-FIAPSSF---AEKVVKAALPD-------ATESQQGYTVPCSKYQD 277
Query: 385 EKTGSFPELKLHFKGGA----EVTLPVENYFAVVGEGSAVCLTVVTDREASGGPSIILGN 440
KT +F L L G + +V++P+ V + C+ +V GG I+GN
Sbjct: 278 SKT-TF-SLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVL---PDGGNQFIVGN 332
Query: 441 FQMQNYYVEYDLRNQRLGF 459
++ + YD R+GF
Sbjct: 333 LFLRFFVNVYDFGKNRIGF 351
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 88/380 (23%), Positives = 138/380 (36%), Gaps = 94/380 (24%)
Query: 95 FGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSW 154
GTPP+ I DTGS +W ++H + CS+ F P+ SS+
Sbjct: 20 IGTPPESFKVIFDTGSSNLWV-SSSHCSAQACSNHN--KFKPRQSST------------- 63
Query: 155 IHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVG 214
+ E+ + D + YG+G GI +T+++ PN +G
Sbjct: 64 -YVETGKTVD--------------------LTYGTGGMRGILGQDTVSVGGGSDPNQELG 102
Query: 215 CSVLSSRQPAGIAGF----GRGKTSLPSQLNLDKFSYCLLSHKFDDTTRTSSLILDNGSS 270
S A F G S+ + + F + S + S + G++
Sbjct: 103 ESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDN-MGSQSLVEKDLFSFYLSGGGAN 161
Query: 271 HSDKKTTGLTYTPFVNN----PSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRD 326
S+ G+ + + + P AE+ Y+ V L ITV GQ
Sbjct: 162 GSEVMLGGVDNSHYTGSIHWIPVTAEK-----YWQVALDGITVNGQTAACEGCQ------ 210
Query: 327 GNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTG--LRPCFDVPG 384
IVD+GT+ +AP VS + N + +GA G + C V
Sbjct: 211 ----AIVDTGTS-KIVAP----------VSALA---NIMKDIGASENQGEMMGNCASVQ- 251
Query: 385 EKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPS-----IILG 439
S P++ G + LP Y EG T + +SG PS I G
Sbjct: 252 ----SLPDITFTIN-GVKQPLPPSAYI----EGDQAFCT--SGLGSSGVPSNTSELWIFG 300
Query: 440 NFQMQNYYVEYDLRNQRLGF 459
+ ++NYY YD N ++GF
Sbjct: 301 DVFLRNYYTIYDRTNNKVGF 320
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 35/110 (31%)
Query: 95 FGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSW 154
GTPPQ + DTGS +W P + CK + C W
Sbjct: 21 IGTPPQCFTVVFDTGSSNLWVPSIH---CKLLD-----------------IAC------W 54
Query: 155 IHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLP 204
IHH + +D+ KN T S+ + YGSG G +T+++P
Sbjct: 55 IHH-----KYNSDKSSTYVKNGT----SFDIHYGSGSLSGYLSQDTVSVP 95
>pdb|1JT2|A Chain A, Structural Basis For The Substrate Specificity Of The
Ferul Domain Of The Cellulosomal Xylanase Z From C.
Thermocellum
Length = 268
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 188 GSGLTEGIALSETLNLPNRIIPNFLVGCSVLSSRQPAGIAGF--GRGKTSLPSQLNLDKF 245
G G+ +G + T +L N +IP SV + R+ IAG G G++ NLDKF
Sbjct: 112 GPGIADGYE-NFTKDLLNSLIPYIESNYSVYTDREHRAIAGLAMGGGQSFNIGLTNLDKF 170
Query: 246 SYCLLSHKFDDTTRTSSLILDNGSSHSDK 274
+Y +T L D G + +K
Sbjct: 171 AYIGPISAAPNTYPNERLFPDGGKAAREK 199
>pdb|1JJF|A Chain A, Structural Basis For The Substrate Specificity Of The
Feruloyl Esterase Domain Of The Cellulosomal Xylanase Z
Of Clostridium Thermocellum
Length = 268
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 188 GSGLTEGIALSETLNLPNRIIPNFLVGCSVLSSRQPAGIAGF--GRGKTSLPSQLNLDKF 245
G G+ +G + T +L N +IP SV + R+ IAG G G++ NLDKF
Sbjct: 112 GPGIADGYE-NFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKF 170
Query: 246 SYCLLSHKFDDTTRTSSLILDNGSSHSDK 274
+Y +T L D G + +K
Sbjct: 171 AYIGPISAAPNTYPNERLFPDGGKAAREK 199
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 73/174 (41%), Gaps = 21/174 (12%)
Query: 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQM 358
YY + + ++ +GGQ + + + D+ IVDSGTT + ++F+ V +
Sbjct: 196 YYQIEILKLEIGGQSLNLDCREYNADK-----AIVDSGTTLLRLPQKVFDA-----VVEA 245
Query: 359 VKNRNYTRALGAEALTGLR-PCFDVPGEKTGSFPELKLHFKG-----GAEVTLPVENYFA 412
V + TG + C+ FP++ ++ + +T+ + Y
Sbjct: 246 VARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQ 305
Query: 413 -VVGEG-SAVCLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464
++G G + C + ++++G M+ +YV +D +R+GF C
Sbjct: 306 PMMGAGLNYECYRFGISPSTN---ALVIGATVMEGFYVIFDRAQKRVGFAASPC 356
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 14/66 (21%)
Query: 95 FGTPPQIIPFILDTGSHLVWFP--------CTNHYQ------CKYCSSSKIPSFIPKLSS 140
GTP Q + DTGS +W P CTNH + Y S+S+ S S
Sbjct: 20 IGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTYQSTSETVSITYGTGS 79
Query: 141 SSRLLG 146
+ +LG
Sbjct: 80 MTGILG 85
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 14/66 (21%)
Query: 95 FGTPPQIIPFILDTGSHLVWFP--------CTNHYQ------CKYCSSSKIPSFIPKLSS 140
GTP Q + DTGS +W P CTNH + Y S+S+ S S
Sbjct: 20 IGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTYQSTSETVSITYGTGS 79
Query: 141 SSRLLG 146
+ +LG
Sbjct: 80 MTGILG 85
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 95 FGTPPQIIPFILDTGSHLVWFP--------CTNHYQCKYCSSSKIPSFIPKLS 139
GTP Q I DTGS +W P C++H Q SS + +LS
Sbjct: 20 IGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATXQELS 72
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 95 FGTPPQIIPFILDTGSHLVWFP--------CTNHYQCKYCSSSKIPSFIPKLS 139
GTP Q I DTGS +W P C++H Q SS + +LS
Sbjct: 20 IGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATXQELS 72
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 95 FGTPPQIIPFILDTGSHLVWFP--------CTNHYQCKYCSSSKIPSFIPKLS 139
GTP Q I DTGS +W P C++H Q SS + +LS
Sbjct: 64 IGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATXQELS 116
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 95 FGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSS 128
GTP Q I DTGS +W P YCSS
Sbjct: 64 IGTPAQDFTVIFDTGSSNLWVPSV------YCSS 91
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 95 FGTPPQIIPFILDTGSHLVWFP--------CTNHYQCKYCSSSKIPSFIPKLS 139
GTP Q I DTGS +W P C++H Q SS + +LS
Sbjct: 20 IGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELS 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,016,678
Number of Sequences: 62578
Number of extensions: 526890
Number of successful extensions: 1212
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 1039
Number of HSP's gapped (non-prelim): 185
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)