Query 012359
Match_columns 465
No_of_seqs 273 out of 1709
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 01:48:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2.4E-63 5.2E-68 501.8 42.9 391 24-465 20-429 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 1.7E-59 3.7E-64 475.6 35.7 310 75-465 107-449 (482)
3 cd05478 pepsin_A Pepsin A, asp 100.0 6.9E-57 1.5E-61 440.8 27.6 298 80-461 2-317 (317)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 1.8E-56 4E-61 439.5 29.6 301 84-461 2-325 (325)
5 KOG1339 Aspartyl protease [Pos 100.0 1.9E-55 4.2E-60 442.1 35.4 343 78-465 36-397 (398)
6 cd05486 Cathespin_E Cathepsin 100.0 2.3E-56 5E-61 436.9 27.4 295 89-461 1-316 (316)
7 cd05487 renin_like Renin stimu 100.0 5.1E-56 1.1E-60 436.1 28.3 303 81-462 1-326 (326)
8 PTZ00147 plasmepsin-1; Provisi 100.0 4.2E-55 9E-60 440.4 35.4 306 73-463 124-450 (453)
9 cd06098 phytepsin Phytepsin, a 100.0 2.1E-55 4.5E-60 430.0 30.4 293 79-461 1-317 (317)
10 cd05488 Proteinase_A_fungi Fun 100.0 1.3E-55 2.9E-60 432.1 28.5 300 79-461 1-320 (320)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 2.3E-54 5E-59 434.0 35.8 307 72-463 122-449 (450)
12 cd05477 gastricsin Gastricsins 100.0 3.8E-55 8.2E-60 428.8 28.5 297 86-462 1-318 (318)
13 cd05485 Cathepsin_D_like Cathe 100.0 4.9E-55 1.1E-59 429.3 28.3 305 79-461 2-329 (329)
14 cd05472 cnd41_like Chloroplast 100.0 3.6E-54 7.8E-59 418.4 30.9 290 88-464 1-299 (299)
15 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.1E-53 2.3E-58 419.6 29.3 290 87-465 2-326 (326)
16 cd05473 beta_secretase_like Be 100.0 1.5E-51 3.2E-56 410.5 29.6 315 87-465 2-348 (364)
17 cd05489 xylanase_inhibitor_I_l 100.0 1.1E-49 2.3E-54 394.0 31.8 326 95-462 2-361 (362)
18 cd06097 Aspergillopepsin_like 100.0 1.5E-50 3.3E-55 388.7 23.0 258 89-461 1-278 (278)
19 cd05476 pepsin_A_like_plant Ch 100.0 8.6E-50 1.9E-54 380.7 27.5 256 88-464 1-265 (265)
20 cd05475 nucellin_like Nucellin 100.0 1.1E-48 2.3E-53 374.5 28.1 253 87-464 1-273 (273)
21 PF00026 Asp: Eukaryotic aspar 100.0 3.1E-49 6.7E-54 387.5 18.2 295 88-462 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 2.6E-48 5.7E-53 377.0 23.3 273 88-462 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 1.1E-44 2.3E-49 349.4 24.9 264 89-461 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 2.5E-28 5.4E-33 214.7 11.5 152 89-268 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 1.6E-24 3.4E-29 190.4 15.1 157 299-461 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 1.2E-22 2.6E-27 166.7 12.0 102 91-229 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.1 6.2E-06 1.3E-10 65.2 6.5 93 87-231 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.6 0.0094 2E-07 49.3 7.8 99 81-231 4-103 (121)
29 PF13650 Asp_protease_2: Aspar 95.8 0.038 8.2E-07 42.6 6.9 38 192-230 52-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.1 0.11 2.3E-06 43.3 7.6 92 85-231 13-107 (124)
31 cd05479 RP_DDI RP_DDI; retrope 95.1 0.1 2.2E-06 43.4 7.4 25 435-459 100-124 (124)
32 PF08284 RVP_2: Retroviral asp 94.5 0.16 3.5E-06 42.8 7.3 28 435-462 105-132 (135)
33 PF11925 DUF3443: Protein of u 94.1 0.68 1.5E-05 45.2 11.4 47 186-232 83-149 (370)
34 cd05484 retropepsin_like_LTR_2 93.2 0.45 9.7E-06 37.0 7.2 28 89-118 1-28 (91)
35 TIGR03698 clan_AA_DTGF clan AA 90.5 1.2 2.6E-05 35.9 7.0 23 435-457 85-107 (107)
36 TIGR02281 clan_AA_DTGA clan AA 87.7 1.2 2.6E-05 36.8 5.1 36 297-350 9-44 (121)
37 PF13975 gag-asp_proteas: gag- 85.4 1.5 3.2E-05 32.4 4.1 32 85-118 5-36 (72)
38 PF13650 Asp_protease_2: Aspar 84.7 1.4 3E-05 33.7 3.9 21 330-350 11-31 (90)
39 COG3577 Predicted aspartyl pro 83.3 4.8 0.0001 36.0 7.0 87 78-215 95-182 (215)
40 cd05484 retropepsin_like_LTR_2 81.2 2.6 5.7E-05 32.6 4.2 30 306-350 4-33 (91)
41 PF13975 gag-asp_proteas: gag- 79.7 3.4 7.4E-05 30.5 4.2 29 307-350 13-41 (72)
42 cd05483 retropepsin_like_bacte 77.4 4.4 9.4E-05 31.2 4.5 21 330-350 15-35 (96)
43 PF12384 Peptidase_A2B: Ty3 tr 77.4 5.4 0.00012 34.4 5.1 22 329-350 46-67 (177)
44 PF00077 RVP: Retroviral aspar 76.7 3.7 8.1E-05 32.2 3.9 27 90-118 7-33 (100)
45 cd06095 RP_RTVL_H_like Retrope 76.0 3.7 8E-05 31.4 3.6 21 330-350 11-31 (86)
46 PF09668 Asp_protease: Asparty 75.6 5.7 0.00012 32.8 4.7 30 306-350 28-57 (124)
47 cd06094 RP_Saci_like RP_Saci_l 75.1 17 0.00037 28.0 6.9 21 326-346 7-27 (89)
48 PF07172 GRP: Glycine rich pro 73.2 2.7 5.8E-05 33.0 2.2 21 1-22 1-21 (95)
49 PF02160 Peptidase_A3: Caulifl 69.3 9.5 0.00021 34.3 5.0 26 434-460 91-116 (201)
50 PF09668 Asp_protease: Asparty 68.3 14 0.0003 30.6 5.4 30 87-118 23-52 (124)
51 PF00077 RVP: Retroviral aspar 67.7 7 0.00015 30.6 3.5 26 306-346 9-34 (100)
52 COG3577 Predicted aspartyl pro 62.8 17 0.00036 32.7 5.1 35 297-349 103-137 (215)
53 cd05482 HIV_retropepsin_like R 60.0 12 0.00026 28.8 3.4 25 92-118 2-26 (87)
54 cd06095 RP_RTVL_H_like Retrope 59.9 11 0.00025 28.7 3.3 25 92-118 2-26 (86)
55 PF12384 Peptidase_A2B: Ty3 tr 59.0 12 0.00027 32.2 3.5 29 90-118 34-62 (177)
56 cd05481 retropepsin_like_LTR_1 58.8 12 0.00027 29.1 3.4 21 330-350 12-32 (93)
57 COG5550 Predicted aspartyl pro 53.8 8.8 0.00019 31.4 1.8 20 331-350 29-49 (125)
58 cd05470 pepsin_retropepsin_lik 37.0 21 0.00045 28.2 1.6 18 329-346 12-29 (109)
59 TIGR03698 clan_AA_DTGF clan AA 30.8 62 0.0014 25.8 3.4 27 91-117 2-33 (107)
60 cd06098 phytepsin Phytepsin, a 29.3 47 0.001 32.2 3.0 18 329-346 24-41 (317)
61 KOG0012 DNA damage inducible p 28.5 1.6E+02 0.0035 29.0 6.1 40 420-462 307-346 (380)
62 cd05478 pepsin_A Pepsin A, asp 23.6 65 0.0014 31.2 2.8 17 329-345 24-40 (317)
63 cd06097 Aspergillopepsin_like 23.4 76 0.0017 30.0 3.1 18 329-346 14-31 (278)
64 cd05471 pepsin_like Pepsin-lik 23.1 83 0.0018 29.4 3.4 42 77-118 170-219 (283)
65 PF08284 RVP_2: Retroviral asp 23.0 1.1E+02 0.0025 25.5 3.7 30 87-118 20-49 (135)
66 cd05490 Cathepsin_D2 Cathepsin 22.9 69 0.0015 31.1 2.8 17 329-345 20-36 (325)
67 cd05488 Proteinase_A_fungi Fun 22.7 65 0.0014 31.2 2.6 17 329-345 24-40 (320)
68 cd05487 renin_like Renin stimu 21.1 79 0.0017 30.8 2.8 18 329-346 22-39 (326)
69 PTZ00147 plasmepsin-1; Provisi 20.9 85 0.0018 32.4 3.0 18 329-346 153-170 (453)
70 cd05480 NRIP_C NRIP_C; putativ 20.9 4.3E+02 0.0094 21.0 6.8 32 420-454 72-103 (103)
71 cd06096 Plasmepsin_5 Plasmepsi 20.8 71 0.0015 31.1 2.4 18 329-346 17-34 (326)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.4e-63 Score=501.78 Aligned_cols=391 Identities=29% Similarity=0.527 Sum_probs=308.8
Q ss_pred cCcceEEEEEeecCC--C----CCCChHHHHHHHHhhchhhHhhhcCCCCCCccccccceeeecccCCcccEEEEEeeCC
Q 012359 24 SSITSLTFSLSRFHT--N----PSQDSYQNLNSLVSSSLTRALHIKNPQTKTTTTTTTTTTTNISSHSYGGYSISLSFGT 97 (465)
Q Consensus 24 ~~~~~~~~pl~~~~~--~----~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~~~i~iGt 97 (465)
+....+++||.|++. . +.....++++++++++.+|.+++..+... ...+..++.. .++.|+++|.|||
T Consensus 20 ~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-----~~~~~~~~~~-~~~~Y~v~i~iGT 93 (431)
T PLN03146 20 APKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS-----PNDPQSDLIS-NGGEYLMNISIGT 93 (431)
T ss_pred ccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc-----CCccccCccc-CCccEEEEEEcCC
Confidence 345689999999842 2 24455688999999999999888644321 1233334433 4579999999999
Q ss_pred CCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCCCCCCCCCCCCccCCCCCc
Q 012359 98 PPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCNDEPLATSKNCT 177 (465)
Q Consensus 98 P~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~c~~~~~~~~~~c~ 177 (465)
|||++.|+|||||+++||+|. +|..|..+.++.|||++|+||+.+.|.++.|+..... ..| .. +
T Consensus 94 Ppq~~~vi~DTGS~l~Wv~C~---~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~-~~c---~~-----~---- 157 (431)
T PLN03146 94 PPVPILAIADTGSDLIWTQCK---PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQ-ASC---SD-----E---- 157 (431)
T ss_pred CCceEEEEECCCCCcceEcCC---CCcccccCCCCcccCCCCCCCcccCCCCcccccCCCC-CCC---CC-----C----
Confidence 999999999999999999999 9999998889999999999999999999999865432 122 21 1
Q ss_pred cCCCceeEecCCce-EEEeEEEEEEEcCC-----cccccEEEeceecCCC----CCCcccccCCCCCCcccccCC---Ce
Q 012359 178 QICPSYLVLYGSGL-TEGIALSETLNLPN-----RIIPNFLVGCSVLSSR----QPAGIAGFGRGKTSLPSQLNL---DK 244 (465)
Q Consensus 178 ~~C~~~~~~Yg~g~-~~G~~~~D~v~~~~-----~~i~~~~fg~~~~~~~----~~~GilGLg~~~~sl~~ql~~---~~ 244 (465)
+.| .|.+.||+|+ +.|.+++|+|+|++ ..++++.|||++.... ..+||||||++..|+++|+.. ++
T Consensus 158 ~~c-~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~ 236 (431)
T PLN03146 158 NTC-TYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGK 236 (431)
T ss_pred CCC-eeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCc
Confidence 246 9999999998 78999999999987 3589999999986532 359999999999999999764 68
Q ss_pred eeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeEEEEeeEEEECCEEEEeeccceecc
Q 012359 245 FSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLD 324 (465)
Q Consensus 245 Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 324 (465)
||+||.+.. ......|.|+||+. .++..+.+.|+|++.... ..+|.|+|++|+||++.+.++...+.
T Consensus 237 FSycL~~~~--~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~-------~~~y~V~L~gIsVgg~~l~~~~~~~~-- 303 (431)
T PLN03146 237 FSYCLVPLS--SDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDP-------DTFYYLTLEAISVGSKKLPYTGSSKN-- 303 (431)
T ss_pred EEEECCCCC--CCCCCcceEEeCCc--cccCCCCceEcccccCCC-------CCeEEEeEEEEEECCEECcCCccccc--
Confidence 999997631 22234799999984 331234589999986421 46899999999999999887666553
Q ss_pred cCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCccccCCCCCccCCeEEEEEcCCcEEE
Q 012359 325 RDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFKGGAEVT 404 (465)
Q Consensus 325 ~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~ 404 (465)
..+...+||||||++++||+++|++|.++|.+.+.. .. .......+.+|+..... ..+|.|+|+| +|+++.
T Consensus 304 ~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~---~~---~~~~~~~~~~C~~~~~~--~~~P~i~~~F-~Ga~~~ 374 (431)
T PLN03146 304 GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGG---ER---VSDPQGLLSLCYSSTSD--IKLPIITAHF-TGADVK 374 (431)
T ss_pred cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhcc---cc---CCCCCCCCCccccCCCC--CCCCeEEEEE-CCCeee
Confidence 234467999999999999999999999999988762 11 11222346789975322 4789999999 689999
Q ss_pred ecCCCeEEEecCCCeEEEEEEecCCCCCCCceeecccceeeeEEEEeCCCCEEEEecCCCC
Q 012359 405 LPVENYFAVVGEGSAVCLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLCK 465 (465)
Q Consensus 405 l~~~~yi~~~~~~~~~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfA~~~C~ 465 (465)
|++++|+++... +..|+.++.. .+.||||+.|||++|+|||++++|||||+++|+
T Consensus 375 l~~~~~~~~~~~-~~~Cl~~~~~-----~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~ 429 (431)
T PLN03146 375 LQPLNTFVKVSE-DLVCFAMIPT-----SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT 429 (431)
T ss_pred cCcceeEEEcCC-CcEEEEEecC-----CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence 999999998765 6789987643 235999999999999999999999999999995
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.7e-59 Score=475.65 Aligned_cols=310 Identities=19% Similarity=0.334 Sum_probs=255.1
Q ss_pred cceeeecccCCcccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCC
Q 012359 75 TTTTTNISSHSYGGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSW 154 (465)
Q Consensus 75 ~~~~~~l~~~~~~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~ 154 (465)
.....+|.|+.+.+|+++|+||||||+|.|+|||||+++||+|. .|..|.|+.++.|||++|+||+.+.+..
T Consensus 107 ~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~---~C~~~~C~~~~~yd~s~SSTy~~~~~~~----- 178 (482)
T PTZ00165 107 QYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK---ECKSGGCAPHRKFDPKKSSTYTKLKLGD----- 178 (482)
T ss_pred cccceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch---hcCcccccccCCCCccccCCcEecCCCC-----
Confidence 34788999999999999999999999999999999999999999 9988766778999999999999843110
Q ss_pred CccCCCCCCCCCCCCccCCCCCccCCCceeEecCCceEEEeEEEEEEEcCCcccccEEEeceecCCC------CCCcccc
Q 012359 155 IHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSSR------QPAGIAG 228 (465)
Q Consensus 155 ~~~~~~~c~~c~~~~~~~~~~c~~~C~~~~~~Yg~g~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~~------~~~GilG 228 (465)
. .+ .+.+.||+|++.|.+++|+|++++..++++.||+++.... ..|||||
T Consensus 179 --------------------~---~~-~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DGILG 234 (482)
T PTZ00165 179 --------------------E---SA-ETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVG 234 (482)
T ss_pred --------------------c---cc-eEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEeccccccccccccceee
Confidence 0 00 4779999999999999999999999999999999985422 2499999
Q ss_pred cCCCCCCc---------c----cc--cCCCeeeeecCCCCCCCCCCccceEEecCCCCCCcC--CCCeeeeccccCCccc
Q 012359 229 FGRGKTSL---------P----SQ--LNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKK--TTGLTYTPFVNNPSVA 291 (465)
Q Consensus 229 Lg~~~~sl---------~----~q--l~~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~--~g~l~~~p~~~~~~~~ 291 (465)
||++..+. + +| +..++||+||.+. ...+|+|+|||+|+.+ + .+++.|+|+..
T Consensus 235 Lg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~-----~~~~G~l~fGGiD~~~-~~~~g~i~~~Pv~~----- 303 (482)
T PTZ00165 235 LGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKD-----LNQPGSISFGSADPKY-TLEGHKIWWFPVIS----- 303 (482)
T ss_pred cCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccC-----CCCCCEEEeCCcCHHH-cCCCCceEEEEccc-----
Confidence 99987532 2 22 3458999999753 2247999999999975 5 57899999987
Q ss_pred ccCCcceeEEEEeeEEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccc
Q 012359 292 ERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAE 371 (465)
Q Consensus 292 ~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 371 (465)
..||.|++++|+|+++.+... .....+|+||||+++++|++++++|.+++..
T Consensus 304 -----~~yW~i~l~~i~vgg~~~~~~--------~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~--------------- 355 (482)
T PTZ00165 304 -----TDYWEIEVVDILIDGKSLGFC--------DRKCKAAIDTGSSLITGPSSVINPLLEKIPL--------------- 355 (482)
T ss_pred -----cceEEEEeCeEEECCEEeeec--------CCceEEEEcCCCccEeCCHHHHHHHHHHcCC---------------
Confidence 579999999999999887642 1236799999999999999999988876532
Q ss_pred cCCCCCCccccCCCCCccCCeEEEEEcCCc-----EEEecCCCeEEEe---cCCCeEEEEEEecCCC--CCCCceeeccc
Q 012359 372 ALTGLRPCFDVPGEKTGSFPELKLHFKGGA-----EVTLPVENYFAVV---GEGSAVCLTVVTDREA--SGGPSIILGNF 441 (465)
Q Consensus 372 ~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~-----~~~l~~~~yi~~~---~~~~~~C~~~i~~~~~--~~~~~~ILG~~ 441 (465)
..+|+.. ..+|+|+|+| +|. +|.|+|++|+++. ..++..|+..+...+. ..++.||||++
T Consensus 356 ----~~~C~~~-----~~lP~itf~f-~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~ 425 (482)
T PTZ00165 356 ----EEDCSNK-----DSLPRISFVL-EDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNN 425 (482)
T ss_pred ----ccccccc-----ccCCceEEEE-CCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchh
Confidence 1368766 6899999999 654 8999999999974 2346789887765331 23568999999
Q ss_pred ceeeeEEEEeCCCCEEEEecCCCC
Q 012359 442 QMQNYYVEYDLRNQRLGFKQQLCK 465 (465)
Q Consensus 442 fl~~~y~vfD~~~~~iGfA~~~C~ 465 (465)
|||++|+|||.+++|||||+++|+
T Consensus 426 Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 426 FIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred hheeEEEEEeCCCCEEEEEeeccC
Confidence 999999999999999999999985
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=6.9e-57 Score=440.80 Aligned_cols=298 Identities=24% Similarity=0.380 Sum_probs=253.9
Q ss_pred ecccCCcccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCC
Q 012359 80 NISSHSYGGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHES 159 (465)
Q Consensus 80 ~l~~~~~~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~ 159 (465)
||.|..+..|+++|.||||||++.|+|||||+++||+|. .|..|.++.++.|||++|+|++...
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~---~C~~~~c~~~~~f~~~~Sst~~~~~------------- 65 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV---YCSSQACSNHNRFNPRQSSTYQSTG------------- 65 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecC---CCCcccccccCcCCCCCCcceeeCC-------------
Confidence 678888899999999999999999999999999999999 9998777778999999999998764
Q ss_pred CCCCCCCCCCccCCCCCccCCCceeEecCCceEEEeEEEEEEEcCCcccccEEEeceecCCC------CCCcccccCCCC
Q 012359 160 IQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSSR------QPAGIAGFGRGK 233 (465)
Q Consensus 160 ~~c~~c~~~~~~~~~~c~~~C~~~~~~Yg~g~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~~------~~~GilGLg~~~ 233 (465)
. .+.+.||+|++.|.+++|+|++++..++++.|||++.... ..+||||||++.
T Consensus 66 -------~--------------~~~~~yg~gs~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~ 124 (317)
T cd05478 66 -------Q--------------PLSIQYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPS 124 (317)
T ss_pred -------c--------------EEEEEECCceEEEEEeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccch
Confidence 1 8999999999999999999999999999999999985431 249999999875
Q ss_pred CC------ccccc------CCCeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeEE
Q 012359 234 TS------LPSQL------NLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYY 301 (465)
Q Consensus 234 ~s------l~~ql------~~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w~ 301 (465)
.+ ++.|| ..++||+||.+. ...+|+|+|||+|+++ +.|++.|+|+.. ..+|.
T Consensus 125 ~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~-----~~~~g~l~~Gg~d~~~-~~g~l~~~p~~~----------~~~w~ 188 (317)
T cd05478 125 IASSGATPVFDNMMSQGLVSQDLFSVYLSSN-----GQQGSVVTFGGIDPSY-YTGSLNWVPVTA----------ETYWQ 188 (317)
T ss_pred hcccCCCCHHHHHHhCCCCCCCEEEEEeCCC-----CCCCeEEEEcccCHHH-ccCceEEEECCC----------CcEEE
Confidence 43 33333 348999999864 2247899999999998 899999999975 57999
Q ss_pred EEeeEEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCccc
Q 012359 302 VGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFD 381 (465)
Q Consensus 302 v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~ 381 (465)
|.+++|+|+++.+.. ..+..++|||||+++++|++++++|++++..... ..+.+.++|+.
T Consensus 189 v~l~~v~v~g~~~~~---------~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~-----------~~~~~~~~C~~ 248 (317)
T cd05478 189 ITVDSVTINGQVVAC---------SGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQN-----------QNGEMVVNCSS 248 (317)
T ss_pred EEeeEEEECCEEEcc---------CCCCEEEECCCchhhhCCHHHHHHHHHHhCCccc-----------cCCcEEeCCcC
Confidence 999999999998753 2236799999999999999999999988754321 23456778986
Q ss_pred cCCCCCccCCeEEEEEcCCcEEEecCCCeEEEecCCCeEEEEEEecCCCCCCCceeecccceeeeEEEEeCCCCEEEEec
Q 012359 382 VPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQ 461 (465)
Q Consensus 382 ~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~~~~~~~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfA~ 461 (465)
. ..+|.|+|+| +|+.|+|+|++|+.+. ...|++.+...+ ..+.||||++|||++|+|||++++|||||+
T Consensus 249 ~-----~~~P~~~f~f-~g~~~~i~~~~y~~~~---~~~C~~~~~~~~--~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 249 I-----SSMPDVVFTI-NGVQYPLPPSAYILQD---QGSCTSGFQSMG--LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred c-----ccCCcEEEEE-CCEEEEECHHHheecC---CCEEeEEEEeCC--CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 5 6789999999 8999999999999865 568998887643 235799999999999999999999999996
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.8e-56 Score=439.49 Aligned_cols=301 Identities=23% Similarity=0.402 Sum_probs=246.3
Q ss_pred CCcccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCC--CCCCCCCCCCCCCCCcccccCCCccCCCCccCCCC
Q 012359 84 HSYGGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYC--SSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQ 161 (465)
Q Consensus 84 ~~~~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C--~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~ 161 (465)
+.+.+|+++|.||||||++.|+|||||+++||+|. .|..| .|..++.|||++|+||+...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~---~C~~~~~~C~~~~~y~~~~SsT~~~~~--------------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSV---HCSLLDIACWLHHKYNSSKSSTYVKNG--------------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcC---CCCCCCccccCcCcCCcccCcceeeCC---------------
Confidence 45689999999999999999999999999999999 89742 23347899999999998633
Q ss_pred CCCCCCCCccCCCCCccCCCceeEecCCceEEEeEEEEEEEcCCcccccEEEeceecCCC------CCCcccccCCCCCC
Q 012359 162 CRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSSR------QPAGIAGFGRGKTS 235 (465)
Q Consensus 162 c~~c~~~~~~~~~~c~~~C~~~~~~Yg~g~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~~------~~~GilGLg~~~~s 235 (465)
| .|.+.||+|++.|.+++|+|+|++..++++.||+++.... ..+||||||++..+
T Consensus 64 ------------------~-~~~i~Yg~G~~~G~~~~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s 124 (325)
T cd05490 64 ------------------T-EFAIQYGSGSLSGYLSQDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRIS 124 (325)
T ss_pred ------------------c-EEEEEECCcEEEEEEeeeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCcccc
Confidence 1 8999999999999999999999999999999999875432 23999999998765
Q ss_pred cc------cc------cCCCeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeEEEE
Q 012359 236 LP------SQ------LNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVG 303 (465)
Q Consensus 236 l~------~q------l~~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w~v~ 303 (465)
.. .+ +..++||+||.+. .....+|+|+|||+|+++ +.|++.|+|+.. ..+|.|+
T Consensus 125 ~~~~~~~~~~l~~~g~i~~~~FS~~L~~~---~~~~~~G~l~~Gg~d~~~-~~g~l~~~~~~~----------~~~w~v~ 190 (325)
T cd05490 125 VDGVTPVFDNIMAQKLVEQNVFSFYLNRD---PDAQPGGELMLGGTDPKY-YTGDLHYVNVTR----------KAYWQIH 190 (325)
T ss_pred ccCCCCHHHHHHhcCCCCCCEEEEEEeCC---CCCCCCCEEEECccCHHH-cCCceEEEEcCc----------ceEEEEE
Confidence 32 22 2348999999753 222347899999999998 899999999975 5799999
Q ss_pred eeEEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCccccC
Q 012359 304 LRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVP 383 (465)
Q Consensus 304 l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 383 (465)
+++|+|++..... .....++|||||+++++|++++++|.+++.+. . ...+.+.++|+..
T Consensus 191 l~~i~vg~~~~~~---------~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~-~----------~~~~~~~~~C~~~- 249 (325)
T cd05490 191 MDQVDVGSGLTLC---------KGGCEAIVDTGTSLITGPVEEVRALQKAIGAV-P----------LIQGEYMIDCEKI- 249 (325)
T ss_pred eeEEEECCeeeec---------CCCCEEEECCCCccccCCHHHHHHHHHHhCCc-c----------ccCCCEEeccccc-
Confidence 9999998864321 22367999999999999999999998877542 1 1234567899865
Q ss_pred CCCCccCCeEEEEEcCCcEEEecCCCeEEEecC-CCeEEEEEEecCC--CCCCCceeecccceeeeEEEEeCCCCEEEEe
Q 012359 384 GEKTGSFPELKLHFKGGAEVTLPVENYFAVVGE-GSAVCLTVVTDRE--ASGGPSIILGNFQMQNYYVEYDLRNQRLGFK 460 (465)
Q Consensus 384 ~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~~~-~~~~C~~~i~~~~--~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfA 460 (465)
..+|+|+|+| +|+.|+|+|++|+++... +...|++.+...+ ...++.||||+.|||++|+|||++++|||||
T Consensus 250 ----~~~P~i~f~f-gg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA 324 (325)
T cd05490 250 ----PTLPVISFSL-GGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFA 324 (325)
T ss_pred ----ccCCCEEEEE-CCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeecc
Confidence 6789999999 899999999999987643 3468998775432 1234579999999999999999999999999
Q ss_pred c
Q 012359 461 Q 461 (465)
Q Consensus 461 ~ 461 (465)
+
T Consensus 325 ~ 325 (325)
T cd05490 325 K 325 (325)
T ss_pred C
Confidence 6
No 5
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-55 Score=442.10 Aligned_cols=343 Identities=36% Similarity=0.694 Sum_probs=282.8
Q ss_pred eeecccCCcccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCC-CCCCCCCCCCCCCCCCCcccccCCCccCCCCc
Q 012359 78 TTNISSHSYGGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCK-YCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIH 156 (465)
Q Consensus 78 ~~~l~~~~~~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~-~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~ 156 (465)
...+....++.|+++|.||||||+|.|+|||||+++||+|. .|. .|..+..+.|||++|+||+.+.|.+..|....
T Consensus 36 ~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~---~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 36 PESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCA---PCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred ccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccc---cccccccccCCCccCccccccccccCCCCccccccc
Confidence 44455566789999999999999999999999999999999 999 78876556699999999999999999998876
Q ss_pred cCCCCCCCCCCCCccCCCCCccCCCceeEecCCc-eEEEeEEEEEEEcCC---cccccEEEeceecCC------CCCCcc
Q 012359 157 HESIQCRDCNDEPLATSKNCTQICPSYLVLYGSG-LTEGIALSETLNLPN---RIIPNFLVGCSVLSS------RQPAGI 226 (465)
Q Consensus 157 ~~~~~c~~c~~~~~~~~~~c~~~C~~~~~~Yg~g-~~~G~~~~D~v~~~~---~~i~~~~fg~~~~~~------~~~~Gi 226 (465)
.. |.. ++.| .|.+.||+| ++.|++++|+|+|++ ..++++.|||+.... ...+||
T Consensus 113 ~~------~~~---------~~~C-~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGI 176 (398)
T KOG1339|consen 113 QS------CSP---------NSSC-PYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGI 176 (398)
T ss_pred cC------ccc---------CCcC-ceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceE
Confidence 42 111 2456 999999995 599999999999998 788889999998663 235999
Q ss_pred cccCCCCCCcccccCC-----CeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeEE
Q 012359 227 AGFGRGKTSLPSQLNL-----DKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYY 301 (465)
Q Consensus 227 lGLg~~~~sl~~ql~~-----~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w~ 301 (465)
||||++.++++.|+.. ++||+||.+... ....+|.|+||++|+.+ +.+.+.|+|+...+ ..||.
T Consensus 177 lGLg~~~~S~~~q~~~~~~~~~~FS~cL~~~~~--~~~~~G~i~fG~~d~~~-~~~~l~~tPl~~~~--------~~~y~ 245 (398)
T KOG1339|consen 177 LGLGRGSLSVPSQLPSFYNAINVFSYCLSSNGS--PSSGGGSIIFGGVDSSH-YTGSLTYTPLLSNP--------STYYQ 245 (398)
T ss_pred eecCCCCccceeecccccCCceeEEEEeCCCCC--CCCCCcEEEECCCcccC-cCCceEEEeeccCC--------CccEE
Confidence 9999999999999865 459999998631 11358999999999998 89999999999953 24999
Q ss_pred EEeeEEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCccc
Q 012359 302 VGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFD 381 (465)
Q Consensus 302 v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~ 381 (465)
|.+++|+|+++. .++...+.. ...++|+||||++++||.++|++|.+++.+... . ....+.+.++|+.
T Consensus 246 v~l~~I~vgg~~-~~~~~~~~~---~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~---~-----~~~~~~~~~~C~~ 313 (398)
T KOG1339|consen 246 VNLDGISVGGKR-PIGSSLFCT---DGGGAIIDSGTSLTYLPTSAYNALREAIGAEVS---V-----VGTDGEYFVPCFS 313 (398)
T ss_pred EEEeEEEECCcc-CCCcceEec---CCCCEEEECCcceeeccHHHHHHHHHHHHhhee---c-----cccCCceeeeccc
Confidence 999999999977 555555442 147899999999999999999999999998741 0 1234567889998
Q ss_pred cCCCCCccCCeEEEEEcCCcEEEecCCCeEEEecCCCeEEEEEEecCCCCCCCceeecccceeeeEEEEeCC-CCEEEEe
Q 012359 382 VPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPSIILGNFQMQNYYVEYDLR-NQRLGFK 460 (465)
Q Consensus 382 ~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~~~~~~~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD~~-~~~iGfA 460 (465)
..... ..+|.|+|+|.+|+.|.|++++|+++...+...|++++...... ..||||+.|||+++++||.. ++|||||
T Consensus 314 ~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~~--~~~ilG~~~~~~~~~~~D~~~~~riGfa 390 (398)
T KOG1339|consen 314 ISTSG-VKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGVCLAFFNGMDSG--PLWILGDVFQQNYLVVFDLGENSRVGFA 390 (398)
T ss_pred CCCCc-ccCCcEEEEECCCcEEEeCccceEEEECCCCCceeeEEecCCCC--ceEEEchHHhCCEEEEEeCCCCCEEEec
Confidence 74322 34999999994489999999999998775222399988764322 57999999999999999999 9999999
Q ss_pred c--CCCC
Q 012359 461 Q--QLCK 465 (465)
Q Consensus 461 ~--~~C~ 465 (465)
+ .+|+
T Consensus 391 ~~~~~c~ 397 (398)
T KOG1339|consen 391 PALTNCS 397 (398)
T ss_pred cccccCC
Confidence 9 7884
No 6
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=2.3e-56 Score=436.88 Aligned_cols=295 Identities=24% Similarity=0.374 Sum_probs=243.9
Q ss_pred EEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCCCCCCCCCCC
Q 012359 89 YSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCNDE 168 (465)
Q Consensus 89 y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~c~~~ 168 (465)
|+++|.||||||+++|+|||||+++||+|. .|..+.|..++.|||++|+|++...
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~---~C~~~~C~~~~~y~~~~SsT~~~~~---------------------- 55 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI---YCTSQACTKHNRFQPSESSTYVSNG---------------------- 55 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC---CCCCcccCccceECCCCCcccccCC----------------------
Confidence 899999999999999999999999999999 8986444457899999999998754
Q ss_pred CccCCCCCccCCCceeEecCCceEEEeEEEEEEEcCCcccccEEEeceecCC------CCCCcccccCCCCCCc------
Q 012359 169 PLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSS------RQPAGIAGFGRGKTSL------ 236 (465)
Q Consensus 169 ~~~~~~~c~~~C~~~~~~Yg~g~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~------~~~~GilGLg~~~~sl------ 236 (465)
| .|.+.|++|++.|.+++|+|++++..++++.||++.... ...+||||||++..+.
T Consensus 56 -----------~-~~~i~Yg~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~ 123 (316)
T cd05486 56 -----------E-AFSIQYGTGSLTGIIGIDQVTVEGITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPV 123 (316)
T ss_pred -----------c-EEEEEeCCcEEEEEeeecEEEECCEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCH
Confidence 1 899999999999999999999999999999999976432 2349999999977653
Q ss_pred ----ccc--cCCCeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeEEEEeeEEEEC
Q 012359 237 ----PSQ--LNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVG 310 (465)
Q Consensus 237 ----~~q--l~~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w~v~l~~i~v~ 310 (465)
.+| +..++||+||.+. ......|.|+|||+|+++ +.|++.|+|+.. ..+|.|++++|+|+
T Consensus 124 ~~~l~~qg~i~~~~FS~~L~~~---~~~~~~g~l~fGg~d~~~-~~g~l~~~pi~~----------~~~w~v~l~~i~v~ 189 (316)
T cd05486 124 FDNMMAQNLVELPMFSVYMSRN---PNSADGGELVFGGFDTSR-FSGQLNWVPVTV----------QGYWQIQLDNIQVG 189 (316)
T ss_pred HHHHHhcCCCCCCEEEEEEccC---CCCCCCcEEEEcccCHHH-cccceEEEECCC----------ceEEEEEeeEEEEe
Confidence 223 3458999999863 122357999999999998 899999999976 57999999999999
Q ss_pred CEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCccccCCCCCccC
Q 012359 311 GQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGSF 390 (465)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 390 (465)
++.+.. .....++|||||+++++|++++++|.+++.+.. ..+.|.++|+.. ..+
T Consensus 190 g~~~~~---------~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~------------~~~~~~~~C~~~-----~~~ 243 (316)
T cd05486 190 GTVIFC---------SDGCQAIVDTGTSLITGPSGDIKQLQNYIGATA------------TDGEYGVDCSTL-----SLM 243 (316)
T ss_pred cceEec---------CCCCEEEECCCcchhhcCHHHHHHHHHHhCCcc------------cCCcEEEecccc-----ccC
Confidence 987643 123679999999999999999999877664321 124567899765 679
Q ss_pred CeEEEEEcCCcEEEecCCCeEEEec-CCCeEEEEEEecCC--CCCCCceeecccceeeeEEEEeCCCCEEEEec
Q 012359 391 PELKLHFKGGAEVTLPVENYFAVVG-EGSAVCLTVVTDRE--ASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQ 461 (465)
Q Consensus 391 p~i~f~f~gg~~~~l~~~~yi~~~~-~~~~~C~~~i~~~~--~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfA~ 461 (465)
|+|+|+| +|+.++|+|++|++... ++...|+..++..+ ...++.||||+.|||++|+|||.+++|||||+
T Consensus 244 p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 244 PSVTFTI-NGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCEEEEE-CCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 9999999 89999999999998752 23578998776532 12345799999999999999999999999996
No 7
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=5.1e-56 Score=436.13 Aligned_cols=303 Identities=21% Similarity=0.389 Sum_probs=250.5
Q ss_pred cccCCcccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCC--CCCCCCCCCCCCCCCcccccCCCccCCCCccC
Q 012359 81 ISSHSYGGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYC--SSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHE 158 (465)
Q Consensus 81 l~~~~~~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C--~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~ 158 (465)
|.|+.+..|+++|.||||+|+++|+|||||+++||++. .|..| .|..++.|||++|+|++...
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~---~C~~~~~~c~~~~~y~~~~SsT~~~~~------------ 65 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSS---KCSPLYTACVTHNLYDASDSSTYKENG------------ 65 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccC---CCcCcchhhcccCcCCCCCCeeeeECC------------
Confidence 34667889999999999999999999999999999998 89763 34457899999999998754
Q ss_pred CCCCCCCCCCCccCCCCCccCCCceeEecCCceEEEeEEEEEEEcCCcccccEEEeceecCC------CCCCcccccCCC
Q 012359 159 SIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSS------RQPAGIAGFGRG 232 (465)
Q Consensus 159 ~~~c~~c~~~~~~~~~~c~~~C~~~~~~Yg~g~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~------~~~~GilGLg~~ 232 (465)
| .|.+.||+|++.|.+++|+|++++..+. +.||++.... ...+||||||++
T Consensus 66 ---------------------~-~~~~~Yg~g~~~G~~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~ 122 (326)
T cd05487 66 ---------------------T-EFTIHYASGTVKGFLSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYP 122 (326)
T ss_pred ---------------------E-EEEEEeCCceEEEEEeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCCh
Confidence 2 8999999999999999999999998875 7899987532 134999999987
Q ss_pred CCC----------cccc--cCCCeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeE
Q 012359 233 KTS----------LPSQ--LNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYY 300 (465)
Q Consensus 233 ~~s----------l~~q--l~~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w 300 (465)
..+ +.+| +..++||+||.+. ......|.|+|||+|+++ +.|+++|+|+.. ..+|
T Consensus 123 ~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~---~~~~~~G~l~fGg~d~~~-y~g~l~~~~~~~----------~~~w 188 (326)
T cd05487 123 KQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRD---SSHSLGGEIVLGGSDPQH-YQGDFHYINTSK----------TGFW 188 (326)
T ss_pred hhcccCCCCHHHHHHhcCCCCCCEEEEEEeCC---CCCCCCcEEEECCcChhh-ccCceEEEECCc----------CceE
Confidence 654 3444 4458999999863 223357999999999998 999999999865 5799
Q ss_pred EEEeeEEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCcc
Q 012359 301 YVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCF 380 (465)
Q Consensus 301 ~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~ 380 (465)
.|++++|+|+++.+.. .....++|||||+++++|++++++|++++.+... .+.|.++|+
T Consensus 189 ~v~l~~i~vg~~~~~~---------~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~------------~~~y~~~C~ 247 (326)
T cd05487 189 QIQMKGVSVGSSTLLC---------EDGCTAVVDTGASFISGPTSSISKLMEALGAKER------------LGDYVVKCN 247 (326)
T ss_pred EEEecEEEECCEEEec---------CCCCEEEECCCccchhCcHHHHHHHHHHhCCccc------------CCCEEEecc
Confidence 9999999999987643 2236799999999999999999999888754311 345678898
Q ss_pred ccCCCCCccCCeEEEEEcCCcEEEecCCCeEEEecC-CCeEEEEEEecCCC--CCCCceeecccceeeeEEEEeCCCCEE
Q 012359 381 DVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGE-GSAVCLTVVTDREA--SGGPSIILGNFQMQNYYVEYDLRNQRL 457 (465)
Q Consensus 381 ~~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~~~-~~~~C~~~i~~~~~--~~~~~~ILG~~fl~~~y~vfD~~~~~i 457 (465)
.. ..+|.|+|+| +++.++|++++|+++..+ ++..|++.+...+. ..++.||||++|||++|+|||++++||
T Consensus 248 ~~-----~~~P~i~f~f-gg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~I 321 (326)
T cd05487 248 EV-----PTLPDISFHL-GGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRI 321 (326)
T ss_pred cc-----CCCCCEEEEE-CCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEE
Confidence 65 6789999999 899999999999987643 35789987765321 234579999999999999999999999
Q ss_pred EEecC
Q 012359 458 GFKQQ 462 (465)
Q Consensus 458 GfA~~ 462 (465)
|||++
T Consensus 322 GfA~a 326 (326)
T cd05487 322 GFALA 326 (326)
T ss_pred eeeeC
Confidence 99986
No 8
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=4.2e-55 Score=440.37 Aligned_cols=306 Identities=20% Similarity=0.307 Sum_probs=250.5
Q ss_pred cccceeeecccCCcccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccC
Q 012359 73 TTTTTTTNISSHSYGGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKC 152 (465)
Q Consensus 73 ~~~~~~~~l~~~~~~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c 152 (465)
.......+|.+..+.+|+++|+||||||++.|+|||||+++||+|. .|..|.|+.++.|||++|+||+..+
T Consensus 124 ~~~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~---~C~~~~C~~~~~yd~s~SsT~~~~~------ 194 (453)
T PTZ00147 124 GSEFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI---KCTTEGCETKNLYDSSKSKTYEKDG------ 194 (453)
T ss_pred cCCCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec---CCCcccccCCCccCCccCcceEECC------
Confidence 3456678899999999999999999999999999999999999999 9998777778999999999998764
Q ss_pred CCCccCCCCCCCCCCCCccCCCCCccCCCceeEecCCceEEEeEEEEEEEcCCcccccEEEeceecCC--------CCCC
Q 012359 153 SWIHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSS--------RQPA 224 (465)
Q Consensus 153 ~~~~~~~~~c~~c~~~~~~~~~~c~~~C~~~~~~Yg~g~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~--------~~~~ 224 (465)
. .+.+.||+|++.|.+++|+|++++..++ ..|+++.... ...|
T Consensus 195 --------------~--------------~f~i~Yg~GsvsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~D 245 (453)
T PTZ00147 195 --------------T--------------KVEMNYVSGTVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFD 245 (453)
T ss_pred --------------C--------------EEEEEeCCCCEEEEEEEEEEEECCEEEE-EEEEEEEeccCccccccccccc
Confidence 1 8999999999999999999999999988 5788876432 1349
Q ss_pred cccccCCCCCCcc------cc------cCCCeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccc
Q 012359 225 GIAGFGRGKTSLP------SQ------LNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAE 292 (465)
Q Consensus 225 GilGLg~~~~sl~------~q------l~~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~ 292 (465)
||||||++..+.. .+ +..++||+||.+. ....|.|+|||+|+++ +.|++.|+|+.+
T Consensus 246 GILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~-----~~~~G~L~fGGiD~~k-y~G~l~y~pl~~------ 313 (453)
T PTZ00147 246 GIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPE-----DKHKGYLTIGGIEERF-YEGPLTYEKLNH------ 313 (453)
T ss_pred ceecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCC-----CCCCeEEEECCcChhh-cCCceEEEEcCC------
Confidence 9999999876532 22 3347999999763 2247999999999998 899999999965
Q ss_pred cCCcceeEEEEeeEEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhccccccccccccc
Q 012359 293 RNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEA 372 (465)
Q Consensus 293 ~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 372 (465)
..+|.|.++ +.+++... ....++|||||+++++|+++++++.+++.+... ...
T Consensus 314 ----~~~W~V~l~-~~vg~~~~------------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~----------~~~ 366 (453)
T PTZ00147 314 ----DLYWQVDLD-VHFGNVSS------------EKANVIVDSGTSVITVPTEFLNKFVESLDVFKV----------PFL 366 (453)
T ss_pred ----CceEEEEEE-EEECCEec------------CceeEEECCCCchhcCCHHHHHHHHHHhCCeec----------CCC
Confidence 579999998 47776432 236799999999999999999999888744211 112
Q ss_pred CCCCCCccccCCCCCccCCeEEEEEcCCcEEEecCCCeEEEecC-CCeEEEEEEecCCCCCCCceeecccceeeeEEEEe
Q 012359 373 LTGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGE-GSAVCLTVVTDREASGGPSIILGNFQMQNYYVEYD 451 (465)
Q Consensus 373 ~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~~~-~~~~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD 451 (465)
+.+.++|+. ..+|+|+|.| +|..++|+|++|+.+..+ +...|++.+...+ ...+.||||++|||++|+|||
T Consensus 367 ~~y~~~C~~------~~lP~~~f~f-~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~-~~~~~~ILGd~FLr~~YtVFD 438 (453)
T PTZ00147 367 PLYVTTCNN------TKLPTLEFRS-PNKVYTLEPEYYLQPIEDIGSALCMLNIIPID-LEKNTFILGDPFMRKYFTVFD 438 (453)
T ss_pred CeEEEeCCC------CCCCeEEEEE-CCEEEEECHHHheeccccCCCcEEEEEEEECC-CCCCCEEECHHHhccEEEEEE
Confidence 345678974 4689999999 899999999999976433 3568988776543 223579999999999999999
Q ss_pred CCCCEEEEecCC
Q 012359 452 LRNQRLGFKQQL 463 (465)
Q Consensus 452 ~~~~~iGfA~~~ 463 (465)
++++|||||+++
T Consensus 439 ~~n~rIGfA~a~ 450 (453)
T PTZ00147 439 YDNHTVGFALAK 450 (453)
T ss_pred CCCCEEEEEEec
Confidence 999999999985
No 9
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.1e-55 Score=429.98 Aligned_cols=293 Identities=25% Similarity=0.424 Sum_probs=243.6
Q ss_pred eecccCCcccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCC---CCCCCCCCCCCCCCCCCcccccCCCccCCCC
Q 012359 79 TNISSHSYGGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCK---YCSSSKIPSFIPKLSSSSRLLGCQNPKCSWI 155 (465)
Q Consensus 79 ~~l~~~~~~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~---~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~ 155 (465)
++|.|+.+.+|+++|.||||||++.|+|||||+++||+|. .|. .|.. ++.|||++|+|++..+
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~---~C~~~~~C~~--~~~y~~~~SsT~~~~~--------- 66 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS---KCYFSIACYF--HSKYKSSKSSTYKKNG--------- 66 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecC---CCCCCccccc--cCcCCcccCCCcccCC---------
Confidence 3577888899999999999999999999999999999999 896 4653 7899999999998754
Q ss_pred ccCCCCCCCCCCCCccCCCCCccCCCceeEecCCceEEEeEEEEEEEcCCcccccEEEeceecCC------CCCCccccc
Q 012359 156 HHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSS------RQPAGIAGF 229 (465)
Q Consensus 156 ~~~~~~c~~c~~~~~~~~~~c~~~C~~~~~~Yg~g~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~------~~~~GilGL 229 (465)
. .+.+.||+|++.|.+++|+|++++..++++.||+++... ...+|||||
T Consensus 67 -----------~--------------~~~i~Yg~G~~~G~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGL 121 (317)
T cd06098 67 -----------T--------------SASIQYGTGSISGFFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGL 121 (317)
T ss_pred -----------C--------------EEEEEcCCceEEEEEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccc
Confidence 2 789999999999999999999999999999999987532 234999999
Q ss_pred CCCCCCc----------ccc--cCCCeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcc
Q 012359 230 GRGKTSL----------PSQ--LNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFS 297 (465)
Q Consensus 230 g~~~~sl----------~~q--l~~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~ 297 (465)
|++..+. .+| +..++||+||.+. ......|.|+|||+|+++ +.|+++|+|+.. .
T Consensus 122 g~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~---~~~~~~G~l~fGg~d~~~-~~g~l~~~pv~~----------~ 187 (317)
T cd06098 122 GFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRN---PDEEEGGELVFGGVDPKH-FKGEHTYVPVTR----------K 187 (317)
T ss_pred cccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecC---CCCCCCcEEEECccChhh-cccceEEEecCc----------C
Confidence 9976553 223 3457999999753 122357999999999998 999999999975 5
Q ss_pred eeEEEEeeEEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCC
Q 012359 298 VYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLR 377 (465)
Q Consensus 298 ~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (465)
.||.|++++|+|+++.+.... ....++|||||+++++|++++++|. +.+
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~--------~~~~aivDTGTs~~~lP~~~~~~i~-----------------------~~~ 236 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCA--------GGCAAIADSGTSLLAGPTTIVTQIN-----------------------SAV 236 (317)
T ss_pred cEEEEEeCeEEECCEEeeecC--------CCcEEEEecCCcceeCCHHHHHhhh-----------------------ccC
Confidence 799999999999998875421 2367999999999999998665432 346
Q ss_pred CccccCCCCCccCCeEEEEEcCCcEEEecCCCeEEEecC-CCeEEEEEEecCC--CCCCCceeecccceeeeEEEEeCCC
Q 012359 378 PCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGE-GSAVCLTVVTDRE--ASGGPSIILGNFQMQNYYVEYDLRN 454 (465)
Q Consensus 378 ~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~~~-~~~~C~~~i~~~~--~~~~~~~ILG~~fl~~~y~vfD~~~ 454 (465)
+|+.. ..+|+|+|+| +|+.|+|+|++|+++... ....|++.+...+ ...++.||||+.|||++|+|||+++
T Consensus 237 ~C~~~-----~~~P~i~f~f-~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~ 310 (317)
T cd06098 237 DCNSL-----SSMPNVSFTI-GGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGN 310 (317)
T ss_pred Ccccc-----ccCCcEEEEE-CCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCC
Confidence 89865 6789999999 899999999999987644 3468998776432 1234579999999999999999999
Q ss_pred CEEEEec
Q 012359 455 QRLGFKQ 461 (465)
Q Consensus 455 ~~iGfA~ 461 (465)
+|||||+
T Consensus 311 ~~iGfA~ 317 (317)
T cd06098 311 LRVGFAE 317 (317)
T ss_pred CEEeecC
Confidence 9999996
No 10
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.3e-55 Score=432.06 Aligned_cols=300 Identities=27% Similarity=0.417 Sum_probs=251.0
Q ss_pred eecccCCcccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccC
Q 012359 79 TNISSHSYGGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHE 158 (465)
Q Consensus 79 ~~l~~~~~~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~ 158 (465)
+||.|+.+..|+++|.||||+|++.|+|||||+++||+|. .|..+.|..++.|+|++|+|++...
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~---~C~~~~C~~~~~y~~~~Sst~~~~~------------ 65 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV---KCGSIACFLHSKYDSSASSTYKANG------------ 65 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC---CCCCcccCCcceECCCCCcceeeCC------------
Confidence 3677888899999999999999999999999999999999 9986444457899999999998643
Q ss_pred CCCCCCCCCCCccCCCCCccCCCceeEecCCceEEEeEEEEEEEcCCcccccEEEeceecCCC------CCCcccccCCC
Q 012359 159 SIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSSR------QPAGIAGFGRG 232 (465)
Q Consensus 159 ~~~c~~c~~~~~~~~~~c~~~C~~~~~~Yg~g~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~~------~~~GilGLg~~ 232 (465)
| .+.+.|++|++.|.+++|+|++++..++++.|||++.... ..+||||||++
T Consensus 66 ---------------------~-~~~~~y~~g~~~G~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~ 123 (320)
T cd05488 66 ---------------------T-EFKIQYGSGSLEGFVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYD 123 (320)
T ss_pred ---------------------C-EEEEEECCceEEEEEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCc
Confidence 2 8999999999999999999999999999999999975431 23999999998
Q ss_pred CCCccc----------c--cCCCeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeE
Q 012359 233 KTSLPS----------Q--LNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYY 300 (465)
Q Consensus 233 ~~sl~~----------q--l~~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w 300 (465)
..+... | +..++||+||.+. ....|.|+|||+|+++ +.++++|+|+.. ..+|
T Consensus 124 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~-----~~~~G~l~fGg~d~~~-~~g~l~~~p~~~----------~~~w 187 (320)
T cd05488 124 TISVNKIVPPFYNMINQGLLDEPVFSFYLGSS-----EEDGGEATFGGIDESR-FTGKITWLPVRR----------KAYW 187 (320)
T ss_pred cccccCCCCHHHHHHhcCCCCCCEEEEEecCC-----CCCCcEEEECCcCHHH-cCCceEEEeCCc----------CcEE
Confidence 766432 1 3458999999864 1357999999999998 899999999976 5799
Q ss_pred EEEeeEEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCcc
Q 012359 301 YVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCF 380 (465)
Q Consensus 301 ~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~ 380 (465)
.|++++|+||++.+..+ +..++|||||+++++|++++++|.+++.+... ..+.|.++|+
T Consensus 188 ~v~l~~i~vg~~~~~~~----------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~-----------~~~~~~~~C~ 246 (320)
T cd05488 188 EVELEKIGLGDEELELE----------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKS-----------WNGQYTVDCS 246 (320)
T ss_pred EEEeCeEEECCEEeccC----------CCeEEEcCCcccccCCHHHHHHHHHHhCCccc-----------cCCcEEeecc
Confidence 99999999999877531 35799999999999999999998887743221 2345667887
Q ss_pred ccCCCCCccCCeEEEEEcCCcEEEecCCCeEEEecCCCeEEEEEEecCCC--CCCCceeecccceeeeEEEEeCCCCEEE
Q 012359 381 DVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREA--SGGPSIILGNFQMQNYYVEYDLRNQRLG 458 (465)
Q Consensus 381 ~~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~~~~~~~C~~~i~~~~~--~~~~~~ILG~~fl~~~y~vfD~~~~~iG 458 (465)
.. ..+|.|+|+| +|++|.|+|++|+++. .+.|++.+...+. ..++.||||+.|||++|+|||++++|||
T Consensus 247 ~~-----~~~P~i~f~f-~g~~~~i~~~~y~~~~---~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG 317 (320)
T cd05488 247 KV-----DSLPDLTFNF-DGYNFTLGPFDYTLEV---SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVG 317 (320)
T ss_pred cc-----ccCCCEEEEE-CCEEEEECHHHheecC---CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEe
Confidence 65 6789999999 8999999999999854 4589988865321 1235799999999999999999999999
Q ss_pred Eec
Q 012359 459 FKQ 461 (465)
Q Consensus 459 fA~ 461 (465)
||+
T Consensus 318 ~a~ 320 (320)
T cd05488 318 LAK 320 (320)
T ss_pred ecC
Confidence 996
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=2.3e-54 Score=434.03 Aligned_cols=307 Identities=20% Similarity=0.297 Sum_probs=248.6
Q ss_pred ccccceeeecccCCcccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCcc
Q 012359 72 TTTTTTTTNISSHSYGGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPK 151 (465)
Q Consensus 72 ~~~~~~~~~l~~~~~~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~ 151 (465)
........++.+..+.+|+++|.||||+|++.|+|||||+++||+|. .|..+.|+.++.|||++|+|++..+
T Consensus 122 ~~~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~---~C~~~~C~~~~~yd~s~SsT~~~~~----- 193 (450)
T PTZ00013 122 LGSENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK---KCDSIGCSIKNLYDSSKSKSYEKDG----- 193 (450)
T ss_pred cccCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc---cCCccccccCCCccCccCcccccCC-----
Confidence 34456677888888899999999999999999999999999999999 9986555568899999999998754
Q ss_pred CCCCccCCCCCCCCCCCCccCCCCCccCCCceeEecCCceEEEeEEEEEEEcCCcccccEEEeceecCC--------CCC
Q 012359 152 CSWIHHESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSS--------RQP 223 (465)
Q Consensus 152 c~~~~~~~~~c~~c~~~~~~~~~~c~~~C~~~~~~Yg~g~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~--------~~~ 223 (465)
| .+.+.||+|++.|.+++|+|++++..++ +.|+++.... ...
T Consensus 194 ----------------------------~-~~~i~YG~Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~ 243 (450)
T PTZ00013 194 ----------------------------T-KVDITYGSGTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEF 243 (450)
T ss_pred ----------------------------c-EEEEEECCceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccc
Confidence 1 8999999999999999999999999887 5788775431 234
Q ss_pred CcccccCCCCCCc------ccc------cCCCeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCccc
Q 012359 224 AGIAGFGRGKTSL------PSQ------LNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVA 291 (465)
Q Consensus 224 ~GilGLg~~~~sl------~~q------l~~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~ 291 (465)
+||||||++..+. +.| +..++||+||.+. ....|.|+|||+|+++ +.|++.|+|+..
T Consensus 244 dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~-----~~~~G~L~fGGiD~~~-y~G~L~y~pv~~----- 312 (450)
T PTZ00013 244 DGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVH-----DVHAGYLTIGGIEEKF-YEGNITYEKLNH----- 312 (450)
T ss_pred cceecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCC-----CCCCCEEEECCcCccc-cccceEEEEcCc-----
Confidence 9999999987653 223 3347999999753 2247999999999998 999999999965
Q ss_pred ccCCcceeEEEEeeEEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccc
Q 012359 292 ERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAE 371 (465)
Q Consensus 292 ~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 371 (465)
..+|.|.++ +.++.... .+..++|||||+++++|+++++++.+++..... ..
T Consensus 313 -----~~yW~I~l~-v~~G~~~~------------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~----------~~ 364 (450)
T PTZ00013 313 -----DLYWQIDLD-VHFGKQTM------------QKANVIVDSGTTTITAPSEFLNKFFANLNVIKV----------PF 364 (450)
T ss_pred -----CceEEEEEE-EEECceec------------cccceEECCCCccccCCHHHHHHHHHHhCCeec----------CC
Confidence 579999998 66664432 236799999999999999999998887743211 12
Q ss_pred cCCCCCCccccCCCCCccCCeEEEEEcCCcEEEecCCCeEEEec-CCCeEEEEEEecCCCCCCCceeecccceeeeEEEE
Q 012359 372 ALTGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVG-EGSAVCLTVVTDREASGGPSIILGNFQMQNYYVEY 450 (465)
Q Consensus 372 ~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~~-~~~~~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vf 450 (465)
.+.+.++|+. ..+|+|+|+| +|..++|+|++|+.+.. .++..|+..+...+ ...+.||||++|||++|+||
T Consensus 365 ~~~y~~~C~~------~~lP~i~F~~-~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~-~~~~~~ILGd~FLr~~Y~VF 436 (450)
T PTZ00013 365 LPFYVTTCDN------KEMPTLEFKS-ANNTYTLEPEYYMNPLLDVDDTLCMITMLPVD-IDDNTFILGDPFMRKYFTVF 436 (450)
T ss_pred CCeEEeecCC------CCCCeEEEEE-CCEEEEECHHHheehhccCCCCeeEEEEEECC-CCCCCEEECHHHhccEEEEE
Confidence 2346778964 4689999999 88999999999997532 23568998776543 23357999999999999999
Q ss_pred eCCCCEEEEecCC
Q 012359 451 DLRNQRLGFKQQL 463 (465)
Q Consensus 451 D~~~~~iGfA~~~ 463 (465)
|++++|||||+++
T Consensus 437 D~~n~rIGfA~a~ 449 (450)
T PTZ00013 437 DYDKESVGFAIAK 449 (450)
T ss_pred ECCCCEEEEEEeC
Confidence 9999999999975
No 12
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=3.8e-55 Score=428.85 Aligned_cols=297 Identities=25% Similarity=0.411 Sum_probs=247.8
Q ss_pred cccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCCCCCCCC
Q 012359 86 YGGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDC 165 (465)
Q Consensus 86 ~~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~c 165 (465)
|..|+++|.||||||++.|+|||||+++||+|. .|..+.|..++.|||++|+||+...
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~---~C~~~~C~~~~~f~~~~SsT~~~~~------------------- 58 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV---LCQSQACTNHTKFNPSQSSTYSTNG------------------- 58 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccC---CCCCccccccCCCCcccCCCceECC-------------------
Confidence 368999999999999999999999999999999 9987555568899999999998654
Q ss_pred CCCCccCCCCCccCCCceeEecCCceEEEeEEEEEEEcCCcccccEEEeceecCC------CCCCcccccCCCCC-----
Q 012359 166 NDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSS------RQPAGIAGFGRGKT----- 234 (465)
Q Consensus 166 ~~~~~~~~~~c~~~C~~~~~~Yg~g~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~------~~~~GilGLg~~~~----- 234 (465)
| .|.+.|++|++.|.+++|+|++++..++++.|||++... ...+||||||++..
T Consensus 59 --------------~-~~~~~Yg~Gs~~G~~~~D~i~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 123 (318)
T cd05477 59 --------------E-TFSLQYGSGSLTGIFGYDTVTVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGA 123 (318)
T ss_pred --------------c-EEEEEECCcEEEEEEEeeEEEECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCC
Confidence 1 899999999999999999999999999999999998642 22499999998643
Q ss_pred -Cccccc------CCCeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeEEEEeeEE
Q 012359 235 -SLPSQL------NLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRI 307 (465)
Q Consensus 235 -sl~~ql------~~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w~v~l~~i 307 (465)
+++.|| ..++||+||.+. .....|.|+|||+|+++ +.+++.|+|+.. ..+|.|++++|
T Consensus 124 ~~~~~~L~~~g~i~~~~FS~~L~~~----~~~~~g~l~fGg~d~~~-~~g~l~~~pv~~----------~~~w~v~l~~i 188 (318)
T cd05477 124 TTVMQGMMQQNLLQAPIFSFYLSGQ----QGQQGGELVFGGVDNNL-YTGQIYWTPVTS----------ETYWQIGIQGF 188 (318)
T ss_pred CCHHHHHHhcCCcCCCEEEEEEcCC----CCCCCCEEEEcccCHHH-cCCceEEEecCC----------ceEEEEEeeEE
Confidence 344443 348999999863 12346899999999998 899999999976 57999999999
Q ss_pred EECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCccccCCCCC
Q 012359 308 TVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKT 387 (465)
Q Consensus 308 ~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 387 (465)
+|+++.+... .....+||||||+++++|++++++|++++.+... ..+.|.++|+..
T Consensus 189 ~v~g~~~~~~--------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~-----------~~~~~~~~C~~~----- 244 (318)
T cd05477 189 QINGQATGWC--------SQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQD-----------QYGQYVVNCNNI----- 244 (318)
T ss_pred EECCEEeccc--------CCCceeeECCCCccEECCHHHHHHHHHHhCCccc-----------cCCCEEEeCCcc-----
Confidence 9999887532 2235799999999999999999999988865432 234567889865
Q ss_pred ccCCeEEEEEcCCcEEEecCCCeEEEecCCCeEEEEEEecCC---CCCCCceeecccceeeeEEEEeCCCCEEEEecC
Q 012359 388 GSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDRE---ASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQ 462 (465)
Q Consensus 388 ~~~p~i~f~f~gg~~~~l~~~~yi~~~~~~~~~C~~~i~~~~---~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfA~~ 462 (465)
..+|.|+|+| +|+++.|++++|+.+. ...|++.+.... ..+.+.||||++|||++|+|||++++|||||++
T Consensus 245 ~~~p~l~~~f-~g~~~~v~~~~y~~~~---~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 245 QNLPTLTFTI-NGVSFPLPPSAYILQN---NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ccCCcEEEEE-CCEEEEECHHHeEecC---CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 6789999999 8999999999999875 468987775421 112346999999999999999999999999986
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=4.9e-55 Score=429.32 Aligned_cols=305 Identities=24% Similarity=0.434 Sum_probs=250.8
Q ss_pred eecccCCcccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCC--CCCCCCCCCCCCCCCcccccCCCccCCCCc
Q 012359 79 TNISSHSYGGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYC--SSSKIPSFIPKLSSSSRLLGCQNPKCSWIH 156 (465)
Q Consensus 79 ~~l~~~~~~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C--~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~ 156 (465)
.+|.|+.+..|+++|+||||+|++.|+|||||+++||+|. .|..| .+..++.|||++|+|++...
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~---~C~~~~~~c~~~~~y~~~~Sst~~~~~---------- 68 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSK---KCSWTNIACLLHNKYDSTKSSTYKKNG---------- 68 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecC---CCCCCCccccCCCeECCcCCCCeEECC----------
Confidence 4678888999999999999999999999999999999999 89743 22346889999999998754
Q ss_pred cCCCCCCCCCCCCccCCCCCccCCCceeEecCCceEEEeEEEEEEEcCCcccccEEEeceecCC------CCCCcccccC
Q 012359 157 HESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSS------RQPAGIAGFG 230 (465)
Q Consensus 157 ~~~~~c~~c~~~~~~~~~~c~~~C~~~~~~Yg~g~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~------~~~~GilGLg 230 (465)
| .|.+.|++|++.|.+++|+|++++..++++.||++.... ...+||||||
T Consensus 69 -----------------------~-~~~i~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg 124 (329)
T cd05485 69 -----------------------T-EFAIQYGSGSLSGFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMG 124 (329)
T ss_pred -----------------------e-EEEEEECCceEEEEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcC
Confidence 1 899999999999999999999999999999999986432 1239999999
Q ss_pred CCCCCc----------ccc--cCCCeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcce
Q 012359 231 RGKTSL----------PSQ--LNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSV 298 (465)
Q Consensus 231 ~~~~sl----------~~q--l~~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~ 298 (465)
++..+. .+| +..+.||+||.+. ......|+|+|||+|+++ +.|+++|+|+.. ..
T Consensus 125 ~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~---~~~~~~G~l~fGg~d~~~-~~g~l~~~p~~~----------~~ 190 (329)
T cd05485 125 YSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRD---PSAKEGGELILGGSDPKH-YTGNFTYLPVTR----------KG 190 (329)
T ss_pred CccccccCCCCHHHHHHhCCCCCCCEEEEEecCC---CCCCCCcEEEEcccCHHH-cccceEEEEcCC----------ce
Confidence 987653 222 2348999999863 222357999999999998 899999999975 57
Q ss_pred eEEEEeeEEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCC
Q 012359 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRP 378 (465)
Q Consensus 299 ~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 378 (465)
+|.|++++|+|+++.+. ..+..+||||||+++++|++++++|.+++.... ...+.|.++
T Consensus 191 ~~~v~~~~i~v~~~~~~----------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~-----------~~~~~~~~~ 249 (329)
T cd05485 191 YWQFKMDSVSVGEGEFC----------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP-----------IIGGEYMVN 249 (329)
T ss_pred EEEEEeeEEEECCeeec----------CCCcEEEEccCCcceeCCHHHHHHHHHHhCCcc-----------ccCCcEEEe
Confidence 99999999999998753 233679999999999999999999888775421 123456788
Q ss_pred ccccCCCCCccCCeEEEEEcCCcEEEecCCCeEEEecC-CCeEEEEEEecCC--CCCCCceeecccceeeeEEEEeCCCC
Q 012359 379 CFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGE-GSAVCLTVVTDRE--ASGGPSIILGNFQMQNYYVEYDLRNQ 455 (465)
Q Consensus 379 C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~~~-~~~~C~~~i~~~~--~~~~~~~ILG~~fl~~~y~vfD~~~~ 455 (465)
|+.. ..+|.|+|+| ||+.+.|++++|+++... +...|++.+...+ ...++.||||+.|||++|+|||++++
T Consensus 250 C~~~-----~~~p~i~f~f-gg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~ 323 (329)
T cd05485 250 CSAI-----PSLPDITFVL-GGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNN 323 (329)
T ss_pred cccc-----ccCCcEEEEE-CCEEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCC
Confidence 9765 6789999999 899999999999988654 3568998766421 12345799999999999999999999
Q ss_pred EEEEec
Q 012359 456 RLGFKQ 461 (465)
Q Consensus 456 ~iGfA~ 461 (465)
|||||+
T Consensus 324 ~ig~a~ 329 (329)
T cd05485 324 RVGFAT 329 (329)
T ss_pred EEeecC
Confidence 999985
No 14
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=3.6e-54 Score=418.44 Aligned_cols=290 Identities=38% Similarity=0.710 Sum_probs=238.7
Q ss_pred cEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCCCCCCCCCC
Q 012359 88 GYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCND 167 (465)
Q Consensus 88 ~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~c~~ 167 (465)
+|+++|.||||||++.|+|||||+++||+|. +| |
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~---~c-----------------------~-------------------- 34 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ---PC-----------------------C-------------------- 34 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC---CC-----------------------C--------------------
Confidence 5999999999999999999999999999887 55 1
Q ss_pred CCccCCCCCccCCCceeEecCCce-EEEeEEEEEEEcCCc-ccccEEEeceecCCC---CCCcccccCCCCCCcccccCC
Q 012359 168 EPLATSKNCTQICPSYLVLYGSGL-TEGIALSETLNLPNR-IIPNFLVGCSVLSSR---QPAGIAGFGRGKTSLPSQLNL 242 (465)
Q Consensus 168 ~~~~~~~~c~~~C~~~~~~Yg~g~-~~G~~~~D~v~~~~~-~i~~~~fg~~~~~~~---~~~GilGLg~~~~sl~~ql~~ 242 (465)
.|.+.|++|+ +.|.+++|+|+|++. .++++.|||+..... ..+||||||++..+++.|+..
T Consensus 35 --------------~~~i~Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~ 100 (299)
T cd05472 35 --------------LYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTAS 100 (299)
T ss_pred --------------eeeeEeCCCceEEEEEEEEEEEeCCCCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhH
Confidence 7999999998 689999999999998 899999999986542 359999999999999988754
Q ss_pred ---CeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeEEEEeeEEEECCEEEEeecc
Q 012359 243 ---DKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHK 319 (465)
Q Consensus 243 ---~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~ 319 (465)
++||+||.+.. ....|+|+|||+|+. .+++.|+|+...+.. ..+|.|+|++|+|+++.+.+++.
T Consensus 101 ~~~~~FS~~L~~~~----~~~~G~l~fGg~d~~---~g~l~~~pv~~~~~~------~~~y~v~l~~i~vg~~~~~~~~~ 167 (299)
T cd05472 101 SYGGVFSYCLPDRS----SSSSGYLSFGAAASV---PAGASFTPMLSNPRV------PTFYYVGLTGISVGGRRLPIPPA 167 (299)
T ss_pred hhcCceEEEccCCC----CCCCceEEeCCcccc---CCCceECCCccCCCC------CCeEEEeeEEEEECCEECCCCcc
Confidence 79999998631 235799999999986 788999999876432 46899999999999998865321
Q ss_pred ceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCC-CccccCCCCCccCCeEEEEEc
Q 012359 320 YLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLR-PCFDVPGEKTGSFPELKLHFK 398 (465)
Q Consensus 320 ~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~p~i~f~f~ 398 (465)
. .....++|||||++++||++++++|.+++.+... .... ....+.+ .|+..++.....+|+|+|+|.
T Consensus 168 ~-----~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~---~~~~----~~~~~~~~~C~~~~~~~~~~~P~i~f~f~ 235 (299)
T cd05472 168 S-----FGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMA---AYPR----APGFSILDTCYDLSGFRSVSVPTVSLHFQ 235 (299)
T ss_pred c-----cCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhc---cCCC----CCCCCCCCccCcCCCCcCCccCCEEEEEC
Confidence 1 2346799999999999999999999999988764 1111 1122334 498776655568999999995
Q ss_pred CCcEEEecCCCeEEEecCCCeEEEEEEecCCCCCCCceeecccceeeeEEEEeCCCCEEEEecCCC
Q 012359 399 GGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464 (465)
Q Consensus 399 gg~~~~l~~~~yi~~~~~~~~~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfA~~~C 464 (465)
+++.+.|++++|+++....+..|+.++... ..++.||||+.|||++|+|||++++|||||+++|
T Consensus 236 ~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~--~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 236 GGADVELDASGVLYPVDDSSQVCLAFAGTS--DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCEEEeCcccEEEEecCCCCEEEEEeCCC--CCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 489999999999985444467898665432 1345799999999999999999999999999999
No 15
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.1e-53 Score=419.55 Aligned_cols=290 Identities=28% Similarity=0.518 Sum_probs=237.1
Q ss_pred ccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCCCCCCCCC
Q 012359 87 GGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCN 166 (465)
Q Consensus 87 ~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~c~ 166 (465)
+.|+++|.||||+|++.|+|||||+++||+|. +|..|..+.++.|||++|+|++.+.|.+..|.. |..|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~---~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-------~~~~~ 71 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCS---QCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-------CLSCL 71 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecC---CCCCcCCCCCCCcCcccccccccccCCCccccc-------cCcCC
Confidence 68999999999999999999999999999999 999998877899999999999999999998843 11121
Q ss_pred CCCccCCCCCccCCCceeEecCCce-EEEeEEEEEEEcCCcccc-------cEEEeceecCC-----CCCCcccccCCCC
Q 012359 167 DEPLATSKNCTQICPSYLVLYGSGL-TEGIALSETLNLPNRIIP-------NFLVGCSVLSS-----RQPAGIAGFGRGK 233 (465)
Q Consensus 167 ~~~~~~~~~c~~~C~~~~~~Yg~g~-~~G~~~~D~v~~~~~~i~-------~~~fg~~~~~~-----~~~~GilGLg~~~ 233 (465)
+ +.| .|.+.|++|+ +.|.+++|+|+|++..++ ++.|||+.... ...+||||||+..
T Consensus 72 ------~----~~~-~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~ 140 (326)
T cd06096 72 ------N----NKC-EYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTK 140 (326)
T ss_pred ------C----CcC-cEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCc
Confidence 1 235 9999999997 899999999999987653 47899987543 2349999999986
Q ss_pred CC-cc-------ccc--C--CCeeeeecCCCCCCCCCCccceEEecCCCCCCcCC----------CCeeeeccccCCccc
Q 012359 234 TS-LP-------SQL--N--LDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKT----------TGLTYTPFVNNPSVA 291 (465)
Q Consensus 234 ~s-l~-------~ql--~--~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~----------g~l~~~p~~~~~~~~ 291 (465)
.+ +. .|. . .++||+||.+ .+|.|+|||+|+++ +. +++.|+|+..
T Consensus 141 ~~~~~~~~~~l~~~~~~~~~~~~FS~~l~~--------~~G~l~~Gg~d~~~-~~~~~~~~~~~~~~~~~~p~~~----- 206 (326)
T cd06096 141 NNGLPTPIILLFTKRPKLKKDKIFSICLSE--------DGGELTIGGYDKDY-TVRNSSIGNNKVSKIVWTPITR----- 206 (326)
T ss_pred ccccCchhHHHHHhcccccCCceEEEEEcC--------CCeEEEECccChhh-hcccccccccccCCceEEeccC-----
Confidence 43 11 221 1 2899999975 36899999999987 55 7899999986
Q ss_pred ccCCcceeEEEEeeEEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccc
Q 012359 292 ERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAE 371 (465)
Q Consensus 292 ~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 371 (465)
..+|.|.+++|+|+++..... ......++|||||++++||++++++|.+++
T Consensus 207 -----~~~y~v~l~~i~vg~~~~~~~-------~~~~~~aivDSGTs~~~lp~~~~~~l~~~~----------------- 257 (326)
T cd06096 207 -----KYYYYVKLEGLSVYGTTSNSG-------NTKGLGMLVDSGSTLSHFPEDLYNKINNFF----------------- 257 (326)
T ss_pred -----CceEEEEEEEEEEccccccee-------cccCCCEEEeCCCCcccCCHHHHHHHHhhc-----------------
Confidence 478999999999998861110 123578999999999999999988876432
Q ss_pred cCCCCCCccccCCCCCccCCeEEEEEcCCcEEEecCCCeEEEecCCCeEEEEEEecCCCCCCCceeecccceeeeEEEEe
Q 012359 372 ALTGLRPCFDVPGEKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPSIILGNFQMQNYYVEYD 451 (465)
Q Consensus 372 ~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~~~~~~~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD 451 (465)
|+|+|+|++|++++|+|++|+++... ..|...+.. ..+.||||++|||++|+|||
T Consensus 258 -------------------P~i~~~f~~g~~~~i~p~~y~~~~~~--~~c~~~~~~----~~~~~ILG~~flr~~y~vFD 312 (326)
T cd06096 258 -------------------PTITIIFENNLKIDWKPSSYLYKKES--FWCKGGEKS----VSNKPILGASFFKNKQIIFD 312 (326)
T ss_pred -------------------CcEEEEEcCCcEEEECHHHhccccCC--ceEEEEEec----CCCceEEChHHhcCcEEEEE
Confidence 78999995489999999999987653 335555543 22479999999999999999
Q ss_pred CCCCEEEEecCCCC
Q 012359 452 LRNQRLGFKQQLCK 465 (465)
Q Consensus 452 ~~~~~iGfA~~~C~ 465 (465)
++++|||||+++|.
T Consensus 313 ~~~~riGfa~~~C~ 326 (326)
T cd06096 313 LDNNRIGFVESNCP 326 (326)
T ss_pred CcCCEEeeEcCCCC
Confidence 99999999999995
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.5e-51 Score=410.46 Aligned_cols=315 Identities=23% Similarity=0.332 Sum_probs=237.1
Q ss_pred ccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCCCCCCCCC
Q 012359 87 GGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCN 166 (465)
Q Consensus 87 ~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~c~ 166 (465)
..|+++|.||||+|++.|+|||||+++||+|. .|..| ++.|||++|+|++..+|
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~---~~~~~----~~~f~~~~SsT~~~~~~------------------- 55 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAA---PHPFI----HTYFHRELSSTYRDLGK------------------- 55 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcC---CCccc----cccCCchhCcCcccCCc-------------------
Confidence 36999999999999999999999999999998 77432 67899999999987652
Q ss_pred CCCccCCCCCccCCCceeEecCCceEEEeEEEEEEEcCCccccc--EEEeceecCC------CCCCcccccCCCCCC---
Q 012359 167 DEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPN--FLVGCSVLSS------RQPAGIAGFGRGKTS--- 235 (465)
Q Consensus 167 ~~~~~~~~~c~~~C~~~~~~Yg~g~~~G~~~~D~v~~~~~~i~~--~~fg~~~~~~------~~~~GilGLg~~~~s--- 235 (465)
.|.+.||+|++.|.+++|+|+|++..... +.|+++.... ...+||||||++.++
T Consensus 56 ---------------~~~i~Yg~Gs~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~ 120 (364)
T cd05473 56 ---------------GVTVPYTQGSWEGELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPD 120 (364)
T ss_pred ---------------eEEEEECcceEEEEEEEEEEEECCCCccceEEeeEEEeccccceecccccceeeeecccccccCC
Confidence 89999999999999999999998642111 2344544322 134999999998753
Q ss_pred ---------cccccCC-CeeeeecCCCCCC----CCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeEE
Q 012359 236 ---------LPSQLNL-DKFSYCLLSHKFD----DTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYY 301 (465)
Q Consensus 236 ---------l~~ql~~-~~Fs~~l~~~~~~----~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w~ 301 (465)
+.+|... ++||+||...... ......|.|+|||+|+++ +.|++.|+|+.. ..+|.
T Consensus 121 ~~~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~-~~g~l~~~p~~~----------~~~~~ 189 (364)
T cd05473 121 SSVEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSL-YKGDIWYTPIRE----------EWYYE 189 (364)
T ss_pred CCCCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhh-cCCCceEEecCc----------ceeEE
Confidence 3445433 5899988532100 122357999999999998 999999999976 57899
Q ss_pred EEeeEEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCccc
Q 012359 302 VGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFD 381 (465)
Q Consensus 302 v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~ 381 (465)
|.+++|+|+++.+.++...+ ....+||||||++++||++++++|++++.++... ..........+.++|+.
T Consensus 190 v~l~~i~vg~~~~~~~~~~~-----~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~----~~~~~~~~~~~~~~C~~ 260 (364)
T cd05473 190 VIILKLEVGGQSLNLDCKEY-----NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI----EDFPDGFWLGSQLACWQ 260 (364)
T ss_pred EEEEEEEECCEecccccccc-----cCccEEEeCCCcceeCCHHHHHHHHHHHHhhccc----ccCCccccCcceeeccc
Confidence 99999999999886543221 1246999999999999999999999999886531 00111111223468986
Q ss_pred cCCCCCccCCeEEEEEcCC-----cEEEecCCCeEEEecC--CCeEEEEEEecCCCCCCCceeecccceeeeEEEEeCCC
Q 012359 382 VPGEKTGSFPELKLHFKGG-----AEVTLPVENYFAVVGE--GSAVCLTVVTDREASGGPSIILGNFQMQNYYVEYDLRN 454 (465)
Q Consensus 382 ~~~~~~~~~p~i~f~f~gg-----~~~~l~~~~yi~~~~~--~~~~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD~~~ 454 (465)
........+|+|+|+|+|+ ..+.|+|++|+..... ....|+.+... ...+.||||+.|||++|+|||+++
T Consensus 261 ~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~---~~~~~~ILG~~flr~~yvvfD~~~ 337 (364)
T cd05473 261 KGTTPWEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAIS---QSTNGTVIGAVIMEGFYVVFDRAN 337 (364)
T ss_pred ccCchHhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeee---cCCCceEEeeeeEcceEEEEECCC
Confidence 5332224689999999542 4789999999976432 24689863222 123469999999999999999999
Q ss_pred CEEEEecCCCC
Q 012359 455 QRLGFKQQLCK 465 (465)
Q Consensus 455 ~~iGfA~~~C~ 465 (465)
+|||||+++|+
T Consensus 338 ~rIGfa~~~C~ 348 (364)
T cd05473 338 KRVGFAVSTCA 348 (364)
T ss_pred CEEeeEecccc
Confidence 99999999995
No 17
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.1e-49 Score=393.98 Aligned_cols=326 Identities=26% Similarity=0.470 Sum_probs=251.5
Q ss_pred eCCCCcE-EEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCCCCCC-CCCCCCccC
Q 012359 95 FGTPPQI-IPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCR-DCNDEPLAT 172 (465)
Q Consensus 95 iGtP~q~-~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~-~c~~~~~~~ 172 (465)
+|||-.+ +.|+|||||+++||+|. + .+|+||..+.|+++.|+..... .|. .|... .
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~---~--------------~~sst~~~~~C~s~~C~~~~~~--~~~~~~~~~---~ 59 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD---A--------------GHSSTYQTVPCSSSVCSLANRY--HCPGTCGGA---P 59 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC---C--------------CCcCCCCccCcCChhhcccccc--CCCccccCC---C
Confidence 5788777 99999999999999998 4 3588999999999999866532 122 11110 1
Q ss_pred CCCCc-cCCCceeEe-cCCce-EEEeEEEEEEEcCC--------cccccEEEeceecCC-----CCCCcccccCCCCCCc
Q 012359 173 SKNCT-QICPSYLVL-YGSGL-TEGIALSETLNLPN--------RIIPNFLVGCSVLSS-----RQPAGIAGFGRGKTSL 236 (465)
Q Consensus 173 ~~~c~-~~C~~~~~~-Yg~g~-~~G~~~~D~v~~~~--------~~i~~~~fg~~~~~~-----~~~~GilGLg~~~~sl 236 (465)
...|. +.| .|... |++|+ +.|++++|+|+|+. ..++++.|||+.... ...|||||||++++|+
T Consensus 60 ~~~c~~~~C-~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl 138 (362)
T cd05489 60 GPGCGNNTC-TAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSL 138 (362)
T ss_pred CCCCCCCcC-eeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccch
Confidence 22453 467 77654 77885 89999999999963 268899999997642 1249999999999999
Q ss_pred ccccCC-----CeeeeecCCCCCCCCCCccceEEecCCCCCCcC------CCCeeeeccccCCcccccCCcceeEEEEee
Q 012359 237 PSQLNL-----DKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKK------TTGLTYTPFVNNPSVAERNAFSVYYYVGLR 305 (465)
Q Consensus 237 ~~ql~~-----~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~------~g~l~~~p~~~~~~~~~~~~~~~~w~v~l~ 305 (465)
+.|+.. ++||+||.+. ....|.|+||+.++.+ + .+.+.|+|++.++.. ..+|.|+|+
T Consensus 139 ~sql~~~~~~~~~FS~CL~~~-----~~~~g~l~fG~~~~~~-~~~~~~~~~~~~~tPl~~~~~~------~~~Y~v~l~ 206 (362)
T cd05489 139 PAQLASAFGVARKFALCLPSS-----PGGPGVAIFGGGPYYL-FPPPIDLSKSLSYTPLLTNPRK------SGEYYIGVT 206 (362)
T ss_pred HHHhhhhcCCCcceEEEeCCC-----CCCCeeEEECCCchhc-ccccccccCCccccccccCCCC------CCceEEEEE
Confidence 999864 7899999863 1247999999998765 4 378999999986532 479999999
Q ss_pred EEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCccccCCC
Q 012359 306 RITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGE 385 (465)
Q Consensus 306 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 385 (465)
+|+||++++.+++..+.....+...+||||||++++||+++|++|.+++.+++.. +.... ........|+.....
T Consensus 207 ~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~---~~~~~--~~~~~~~~C~~~~~~ 281 (362)
T cd05489 207 SIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATAR---IPRVP--AAAVFPELCYPASAL 281 (362)
T ss_pred EEEECCEECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcc---cCcCC--CCCCCcCccccCCCc
Confidence 9999999998876665544445678999999999999999999999999987762 11111 111122578875421
Q ss_pred ----CCccCCeEEEEEcC-CcEEEecCCCeEEEecCCCeEEEEEEecCCCCCCCceeecccceeeeEEEEeCCCCEEEEe
Q 012359 386 ----KTGSFPELKLHFKG-GAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFK 460 (465)
Q Consensus 386 ----~~~~~p~i~f~f~g-g~~~~l~~~~yi~~~~~~~~~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfA 460 (465)
....+|.|+|+|+| |++|+|+|++|+++... +..|++++.... ..++.||||+.|||++|++||++++|||||
T Consensus 282 ~~~~~~~~~P~it~~f~g~g~~~~l~~~ny~~~~~~-~~~Cl~f~~~~~-~~~~~~IlG~~~~~~~~vvyD~~~~riGfa 359 (362)
T cd05489 282 GNTRLGYAVPAIDLVLDGGGVNWTIFGANSMVQVKG-GVACLAFVDGGS-EPRPAVVIGGHQMEDNLLVFDLEKSRLGFS 359 (362)
T ss_pred CCcccccccceEEEEEeCCCeEEEEcCCceEEEcCC-CcEEEEEeeCCC-CCCceEEEeeheecceEEEEECCCCEeecc
Confidence 13689999999965 69999999999998764 678987654321 124579999999999999999999999999
Q ss_pred cC
Q 012359 461 QQ 462 (465)
Q Consensus 461 ~~ 462 (465)
+.
T Consensus 360 ~~ 361 (362)
T cd05489 360 SS 361 (362)
T ss_pred cC
Confidence 74
No 18
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.5e-50 Score=388.73 Aligned_cols=258 Identities=24% Similarity=0.377 Sum_probs=217.6
Q ss_pred EEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCCCCCCCCCCC
Q 012359 89 YSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCNDE 168 (465)
Q Consensus 89 y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~c~~~ 168 (465)
|+++|+||||||++.|+|||||+++||+|. .|..|.++.++.||+++|+|++...
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~---~c~~~~~~~~~~y~~~~Sst~~~~~---------------------- 55 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSS---ETPAAQQGGHKLYDPSKSSTAKLLP---------------------- 55 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeC---CCCchhhccCCcCCCccCccceecC----------------------
Confidence 789999999999999999999999999999 9999988878889999999998653
Q ss_pred CccCCCCCccCCCceeEecCCce-EEEeEEEEEEEcCCcccccEEEeceecCC------CCCCcccccCCCCCCcc----
Q 012359 169 PLATSKNCTQICPSYLVLYGSGL-TEGIALSETLNLPNRIIPNFLVGCSVLSS------RQPAGIAGFGRGKTSLP---- 237 (465)
Q Consensus 169 ~~~~~~~c~~~C~~~~~~Yg~g~-~~G~~~~D~v~~~~~~i~~~~fg~~~~~~------~~~~GilGLg~~~~sl~---- 237 (465)
+ | .+.+.|++|+ +.|.+++|+|+|++..++++.||+++... ...+||||||++..+..
T Consensus 56 ------~----~-~~~i~Y~~G~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 56 ------G----A-TWSISYGDGSSASGIVYTDTVSIGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred ------C----c-EEEEEeCCCCeEEEEEEEEEEEECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCC
Confidence 1 2 8999999997 89999999999999999999999998643 23599999999765432
Q ss_pred ---------cccCCCeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeEEEEeeEEE
Q 012359 238 ---------SQLNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRIT 308 (465)
Q Consensus 238 ---------~ql~~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w~v~l~~i~ 308 (465)
.|+..+.||+||.+. ..|+|+|||+|+++ +.|++.|+|+... ..+|.|++++|+
T Consensus 125 ~~~~~~~l~~~~~~~~Fs~~l~~~-------~~G~l~fGg~D~~~-~~g~l~~~pi~~~---------~~~w~v~l~~i~ 187 (278)
T cd06097 125 QKTFFENALSSLDAPLFTADLRKA-------APGFYTFGYIDESK-YKGEISWTPVDNS---------SGFWQFTSTSYT 187 (278)
T ss_pred CCCHHHHHHHhccCceEEEEecCC-------CCcEEEEeccChHH-cCCceEEEEccCC---------CcEEEEEEeeEE
Confidence 233347999999752 47899999999998 9999999999763 468999999999
Q ss_pred ECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCccccCCCCCc
Q 012359 309 VGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTG 388 (465)
Q Consensus 309 v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 388 (465)
|+++.... .....++|||||+++++|++++++|.+++.+... ....+.|.++|..
T Consensus 188 v~~~~~~~---------~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~~---------~~~~~~~~~~C~~------- 242 (278)
T cd06097 188 VGGDAPWS---------RSGFSAIADTGTTLILLPDAIVEAYYSQVPGAYY---------DSEYGGWVFPCDT------- 242 (278)
T ss_pred ECCcceee---------cCCceEEeecCCchhcCCHHHHHHHHHhCcCCcc---------cCCCCEEEEECCC-------
Confidence 99884321 2347799999999999999999999888742211 1234557788963
Q ss_pred cCCeEEEEEcCCcEEEecCCCeEEEecCCCeEEEEEEecCCCCCCCceeecccceeeeEEEEeCCCCEEEEec
Q 012359 389 SFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQ 461 (465)
Q Consensus 389 ~~p~i~f~f~gg~~~~l~~~~yi~~~~~~~~~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfA~ 461 (465)
.+|+|+|+| .||||++|||++|+|||++++|||||+
T Consensus 243 ~~P~i~f~~-------------------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 243 TLPDLSFAV-------------------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred CCCCEEEEE-------------------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 389999998 499999999999999999999999996
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=8.6e-50 Score=380.75 Aligned_cols=256 Identities=46% Similarity=0.847 Sum_probs=217.6
Q ss_pred cEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCCCCCCCCCC
Q 012359 88 GYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCND 167 (465)
Q Consensus 88 ~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~c~~ 167 (465)
+|+++|+||||||++.|+|||||+++||+|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~------------------------------------------------- 31 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQCC------------------------------------------------- 31 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcCC-------------------------------------------------
Confidence 5999999999999999999999999999751
Q ss_pred CCccCCCCCccCCCceeEecCCce-EEEeEEEEEEEcCCc--ccccEEEeceecCC----CCCCcccccCCCCCCccccc
Q 012359 168 EPLATSKNCTQICPSYLVLYGSGL-TEGIALSETLNLPNR--IIPNFLVGCSVLSS----RQPAGIAGFGRGKTSLPSQL 240 (465)
Q Consensus 168 ~~~~~~~~c~~~C~~~~~~Yg~g~-~~G~~~~D~v~~~~~--~i~~~~fg~~~~~~----~~~~GilGLg~~~~sl~~ql 240 (465)
.|.+.|++|+ +.|.+++|+|+|++. .++++.|||+.... ...+||||||+...+++.||
T Consensus 32 --------------~~~~~Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql 97 (265)
T cd05476 32 --------------SYEYSYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQL 97 (265)
T ss_pred --------------ceEeEeCCCceeeeeEEEEEEEecCCCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHh
Confidence 7889999875 999999999999998 89999999998653 23499999999999999999
Q ss_pred CCC--eeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeEEEEeeEEEECCEEEEeec
Q 012359 241 NLD--KFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWH 318 (465)
Q Consensus 241 ~~~--~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 318 (465)
... +||+||.+.. .....|+|+|||+|++ +.+++.|+|+...+.. ..+|.|++++|+|+++.+.++.
T Consensus 98 ~~~~~~Fs~~l~~~~---~~~~~G~l~fGg~d~~--~~~~l~~~p~~~~~~~------~~~~~v~l~~i~v~~~~~~~~~ 166 (265)
T cd05476 98 GSTGNKFSYCLVPHD---DTGGSSPLILGDAADL--GGSGVVYTPLVKNPAN------PTYYYVNLEGISVGGKRLPIPP 166 (265)
T ss_pred hcccCeeEEEccCCC---CCCCCCeEEECCcccc--cCCCceEeecccCCCC------CCceEeeeEEEEECCEEecCCc
Confidence 875 9999998631 2336899999999997 7899999999875422 5789999999999999987554
Q ss_pred cceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCccccCCCCCccCCeEEEEEc
Q 012359 319 KYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGSFPELKLHFK 398 (465)
Q Consensus 319 ~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~ 398 (465)
..+.........++|||||++++||++++ |.|+|+|.
T Consensus 167 ~~~~~~~~~~~~ai~DTGTs~~~lp~~~~-------------------------------------------P~i~~~f~ 203 (265)
T cd05476 167 SVFAIDSDGSGGTIIDSGTTLTYLPDPAY-------------------------------------------PDLTLHFD 203 (265)
T ss_pred hhcccccCCCCcEEEeCCCcceEcCcccc-------------------------------------------CCEEEEEC
Confidence 43332224457899999999999998653 78999994
Q ss_pred CCcEEEecCCCeEEEecCCCeEEEEEEecCCCCCCCceeecccceeeeEEEEeCCCCEEEEecCCC
Q 012359 399 GGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464 (465)
Q Consensus 399 gg~~~~l~~~~yi~~~~~~~~~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfA~~~C 464 (465)
+++.|.|++++|+.+... +..|+.++... ..+.||||++|||++|+|||.+++|||||+++|
T Consensus 204 ~~~~~~i~~~~y~~~~~~-~~~C~~~~~~~---~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 204 GGADLELPPENYFVDVGE-GVVCLAILSSS---SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCCEEEeCcccEEEECCC-CCEEEEEecCC---CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 489999999999996544 77998776542 456799999999999999999999999999999
No 20
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.1e-48 Score=374.48 Aligned_cols=253 Identities=30% Similarity=0.605 Sum_probs=208.0
Q ss_pred ccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCCCCCCCCC
Q 012359 87 GGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCN 166 (465)
Q Consensus 87 ~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~c~ 166 (465)
+.|+++|.||||||++.|+|||||+++||+|.. +|..|.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~--~c~~c~--------------------------------------- 39 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDA--PCTGCQ--------------------------------------- 39 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCC--CCCCCc---------------------------------------
Confidence 479999999999999999999999999999841 565551
Q ss_pred CCCccCCCCCccCCCceeEecCCc-eEEEeEEEEEEEcCC----cccccEEEeceecCC-------CCCCcccccCCCCC
Q 012359 167 DEPLATSKNCTQICPSYLVLYGSG-LTEGIALSETLNLPN----RIIPNFLVGCSVLSS-------RQPAGIAGFGRGKT 234 (465)
Q Consensus 167 ~~~~~~~~~c~~~C~~~~~~Yg~g-~~~G~~~~D~v~~~~----~~i~~~~fg~~~~~~-------~~~~GilGLg~~~~ 234 (465)
| .|.+.|++| ++.|.+++|+|+|+. ..++++.|||+.... ...+||||||++..
T Consensus 40 -------------c-~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~ 105 (273)
T cd05475 40 -------------C-DYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKI 105 (273)
T ss_pred -------------C-ccEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCC
Confidence 2 899999976 599999999999953 477899999997432 13499999999999
Q ss_pred CcccccCC-----CeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeEEEEeeEEEE
Q 012359 235 SLPSQLNL-----DKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITV 309 (465)
Q Consensus 235 sl~~ql~~-----~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w~v~l~~i~v 309 (465)
++++||.. ++||+||.+. .+|.|+||+ ..+ +.+++.|+|+...+. ..+|.|++.+|+|
T Consensus 106 s~~~ql~~~~~i~~~Fs~~l~~~-------~~g~l~~G~--~~~-~~g~i~ytpl~~~~~-------~~~y~v~l~~i~v 168 (273)
T cd05475 106 SLPSQLASQGIIKNVIGHCLSSN-------GGGFLFFGD--DLV-PSSGVTWTPMRRESQ-------KKHYSPGPASLLF 168 (273)
T ss_pred CHHHHHHhcCCcCceEEEEccCC-------CCeEEEECC--CCC-CCCCeeecccccCCC-------CCeEEEeEeEEEE
Confidence 99998764 6899999752 368899984 444 678899999987532 3689999999999
Q ss_pred CCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCccccCCCCCcc
Q 012359 310 GGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGS 389 (465)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 389 (465)
+++.+. .....++|||||+++++|+++|
T Consensus 169 g~~~~~----------~~~~~~ivDTGTt~t~lp~~~y------------------------------------------ 196 (273)
T cd05475 169 NGQPTG----------GKGLEVVFDSGSSYTYFNAQAY------------------------------------------ 196 (273)
T ss_pred CCEECc----------CCCceEEEECCCceEEcCCccc------------------------------------------
Confidence 998532 2346799999999999999653
Q ss_pred CCeEEEEEcCC---cEEEecCCCeEEEecCCCeEEEEEEecCCCCCCCceeecccceeeeEEEEeCCCCEEEEecCCC
Q 012359 390 FPELKLHFKGG---AEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQLC 464 (465)
Q Consensus 390 ~p~i~f~f~gg---~~~~l~~~~yi~~~~~~~~~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfA~~~C 464 (465)
+|+|+|+|+++ ++++|+|++|+.+... +..|+.++...+...++.||||+.|||++|+|||++++|||||+++|
T Consensus 197 ~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~-~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 197 FKPLTLKFGKGWRTRLLEIPPENYLIISEK-GNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred cccEEEEECCCCceeEEEeCCCceEEEcCC-CCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 37899999433 7999999999987654 66899888654322345799999999999999999999999999999
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=3.1e-49 Score=387.47 Aligned_cols=295 Identities=28% Similarity=0.506 Sum_probs=247.4
Q ss_pred cEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCC-CCCCCCCCCCCCCCCcccccCCCccCCCCccCCCCCCCCC
Q 012359 88 GYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYC-SSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCN 166 (465)
Q Consensus 88 ~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C-~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~c~ 166 (465)
+|+++|.||||+|+++|++||||+++||++. .|..| .+.....|++++|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~---~c~~~~~~~~~~~y~~~~S~t~~~~~-------------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSS---NCNSCSSCASSGFYNPSKSSTFSNQG-------------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBT---TECSHTHHCTSC-BBGGGSTTEEEEE--------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeecee---ccccccccccccccccccccccccce--------------------
Confidence 5999999999999999999999999999999 89887 55567899999999998765
Q ss_pred CCCccCCCCCccCCCceeEecCCceEEEeEEEEEEEcCCcccccEEEeceecCC------CCCCcccccCCCCC------
Q 012359 167 DEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSS------RQPAGIAGFGRGKT------ 234 (465)
Q Consensus 167 ~~~~~~~~~c~~~C~~~~~~Yg~g~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~------~~~~GilGLg~~~~------ 234 (465)
. .+.+.|++|++.|.+++|+|+|++..++++.||++.... ...+||||||++..
T Consensus 58 ~--------------~~~~~y~~g~~~G~~~~D~v~ig~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~ 123 (317)
T PF00026_consen 58 K--------------PFSISYGDGSVSGNLVSDTVSIGGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTY 123 (317)
T ss_dssp E--------------EEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS
T ss_pred e--------------eeeeeccCcccccccccceEeeeeccccccceeccccccccccccccccccccccCCcccccccC
Confidence 2 899999999999999999999999999999999998732 23499999997543
Q ss_pred -Ccccc------cCCCeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeEEEEeeEE
Q 012359 235 -SLPSQ------LNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRI 307 (465)
Q Consensus 235 -sl~~q------l~~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w~v~l~~i 307 (465)
+++.| +..++||++|.+.. ...|.|+|||+|+++ +.++++|+|+.. ..+|.+.+++|
T Consensus 124 ~~~~~~l~~~g~i~~~~fsl~l~~~~-----~~~g~l~~Gg~d~~~-~~g~~~~~~~~~----------~~~w~v~~~~i 187 (317)
T PF00026_consen 124 PTFLDQLVQQGLISSNVFSLYLNPSD-----SQNGSLTFGGYDPSK-YDGDLVWVPLVS----------SGYWSVPLDSI 187 (317)
T ss_dssp -SHHHHHHHTTSSSSSEEEEEEESTT-----SSEEEEEESSEEGGG-EESEEEEEEBSS----------TTTTEEEEEEE
T ss_pred Ccceecchhhccccccccceeeeecc-----cccchheeecccccc-ccCceeccCccc----------ccccccccccc
Confidence 33333 34589999998752 467999999999998 899999999994 67999999999
Q ss_pred EECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCccccCCCCC
Q 012359 308 TVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKT 387 (465)
Q Consensus 308 ~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 387 (465)
.+++...... ....++||||+++++||++++++|++++..... .+.+.++|...
T Consensus 188 ~i~~~~~~~~---------~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~------------~~~~~~~c~~~----- 241 (317)
T PF00026_consen 188 SIGGESVFSS---------SGQQAILDTGTSYIYLPRSIFDAIIKALGGSYS------------DGVYSVPCNST----- 241 (317)
T ss_dssp EETTEEEEEE---------EEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEE------------CSEEEEETTGG-----
T ss_pred cccccccccc---------cceeeecccccccccccchhhHHHHhhhccccc------------ceeEEEecccc-----
Confidence 9999933221 125699999999999999999999998876544 15567888766
Q ss_pred ccCCeEEEEEcCCcEEEecCCCeEEEecC-CCeEEEEEEecCC-CCCCCceeecccceeeeEEEEeCCCCEEEEecC
Q 012359 388 GSFPELKLHFKGGAEVTLPVENYFAVVGE-GSAVCLTVVTDRE-ASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQ 462 (465)
Q Consensus 388 ~~~p~i~f~f~gg~~~~l~~~~yi~~~~~-~~~~C~~~i~~~~-~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfA~~ 462 (465)
..+|.|+|+| ++.+|.|+|++|+.+... ....|+..+...+ ......+|||.+|||++|+|||++++|||||+|
T Consensus 242 ~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 242 DSLPDLTFTF-GGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp GGSEEEEEEE-TTEEEEEEHHHHEEEESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccceEEEee-CCEEEEecchHhcccccccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 6789999999 899999999999998766 2348998887632 134568999999999999999999999999986
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.6e-48 Score=376.97 Aligned_cols=273 Identities=25% Similarity=0.419 Sum_probs=226.6
Q ss_pred cEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCCCCCCCCCC
Q 012359 88 GYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCND 167 (465)
Q Consensus 88 ~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~c~~ 167 (465)
.|+++|.||||+|++.|+|||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 59999999999999999999999999997
Q ss_pred CCccCCCCCccCCCceeEecCCc-eEEEeEEEEEEEcCCcccccEEEeceecCCCCCCcccccCCCCC-----------C
Q 012359 168 EPLATSKNCTQICPSYLVLYGSG-LTEGIALSETLNLPNRIIPNFLVGCSVLSSRQPAGIAGFGRGKT-----------S 235 (465)
Q Consensus 168 ~~~~~~~~c~~~C~~~~~~Yg~g-~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~~~~~GilGLg~~~~-----------s 235 (465)
.|.+.|++| ++.|.+++|+|++++..++++.|||++... ..+||||||++.. +
T Consensus 31 --------------~~~~~Y~~g~~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~-~~~GilGLg~~~~~~~~~~~~~~~s 95 (295)
T cd05474 31 --------------DFSISYGDGTSASGTWGTDTVSIGGATVKNLQFAVANSTS-SDVGVLGIGLPGNEATYGTGYTYPN 95 (295)
T ss_pred --------------eeEEEeccCCcEEEEEEEEEEEECCeEecceEEEEEecCC-CCcceeeECCCCCcccccCCCcCCC
Confidence 266789996 599999999999999999999999999854 3499999999876 4
Q ss_pred cccccC------CCeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeEEEEeeEEEE
Q 012359 236 LPSQLN------LDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITV 309 (465)
Q Consensus 236 l~~ql~------~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w~v~l~~i~v 309 (465)
++.||. .+.||+||.+. ....|.|+|||+|+++ +.+++.|+|+...+.. ....+|.|.+++|+|
T Consensus 96 ~~~~L~~~g~i~~~~Fsl~l~~~-----~~~~g~l~~Gg~d~~~-~~g~~~~~p~~~~~~~----~~~~~~~v~l~~i~v 165 (295)
T cd05474 96 FPIALKKQGLIKKNAYSLYLNDL-----DASTGSILFGGVDTAK-YSGDLVTLPIVNDNGG----SEPSELSVTLSSISV 165 (295)
T ss_pred HHHHHHHCCcccceEEEEEeCCC-----CCCceeEEEeeeccce-eeceeEEEeCcCcCCC----CCceEEEEEEEEEEE
Confidence 666553 37899999863 1357899999999988 8999999999875421 013789999999999
Q ss_pred CCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCccccCCCCCcc
Q 012359 310 GGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGS 389 (465)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 389 (465)
+++.+..+.. .....++|||||++++||++++++|.+++.+... ...+.+.++|+.. ..
T Consensus 166 ~~~~~~~~~~------~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~----------~~~~~~~~~C~~~-----~~ 224 (295)
T cd05474 166 NGSSGNTTLL------SKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYD----------SDEGLYVVDCDAK-----DD 224 (295)
T ss_pred EcCCCccccc------CCCccEEECCCCccEeCCHHHHHHHHHHhCCEEc----------CCCcEEEEeCCCC-----CC
Confidence 9988653211 3457899999999999999999999998876543 1234577899875 34
Q ss_pred CCeEEEEEcCCcEEEecCCCeEEEecC---CCeEEEEEEecCCCCCCCceeecccceeeeEEEEeCCCCEEEEecC
Q 012359 390 FPELKLHFKGGAEVTLPVENYFAVVGE---GSAVCLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQ 462 (465)
Q Consensus 390 ~p~i~f~f~gg~~~~l~~~~yi~~~~~---~~~~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfA~~ 462 (465)
|.|+|+| +|++++||+++|+++... .+..|+..+...+ .+.||||++|||++|++||.+++|||||+|
T Consensus 225 -p~i~f~f-~g~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~---~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 225 -GSLTFNF-GGATISVPLSDLVLPASTDDGGDGACYLGIQPST---SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred -CEEEEEE-CCeEEEEEHHHhEeccccCCCCCCCeEEEEEeCC---CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9999999 889999999999987642 3678987776533 257999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.1e-44 Score=349.40 Aligned_cols=264 Identities=33% Similarity=0.571 Sum_probs=219.9
Q ss_pred EEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCC--CCCCCCCCcccccCCCccCCCCccCCCCCCCCC
Q 012359 89 YSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPS--FIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCN 166 (465)
Q Consensus 89 y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~--y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~c~ 166 (465)
|+++|.||+|+|++.|+|||||+++||+|. .|..|.++.... |++..|+++....
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~---~c~~~~~~~~~~~~~~~~~s~~~~~~~-------------------- 57 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSS---NCTSCSCQKHPRFKYDSSKSSTYKDTG-------------------- 57 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecC---CCCccccccCCCCccCccCCceeecCC--------------------
Confidence 789999999999999999999999999999 999887765554 6777776665432
Q ss_pred CCCccCCCCCccCCCceeEecCCceEEEeEEEEEEEcCCcccccEEEeceecCC-----CCCCcccccCCCC------CC
Q 012359 167 DEPLATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSS-----RQPAGIAGFGRGK------TS 235 (465)
Q Consensus 167 ~~~~~~~~~c~~~C~~~~~~Yg~g~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~-----~~~~GilGLg~~~------~s 235 (465)
| .+.+.|++|++.|.+++|+|+|++..++++.|||++... ...+||||||+.. .+
T Consensus 58 -------------~-~~~~~Y~~g~~~g~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 58 -------------C-TFSITYGDGSVTGGLGTDTVTIGGLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred -------------C-EEEEEECCCeEEEEEEEeEEEECCEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCC
Confidence 3 899999999999999999999999999999999999654 2449999999988 67
Q ss_pred cccccC------CCeeeeecCCCCCCCCCCccceEEecCCCCCCcCCCCeeeeccccCCcccccCCcceeEEEEeeEEEE
Q 012359 236 LPSQLN------LDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITV 309 (465)
Q Consensus 236 l~~ql~------~~~Fs~~l~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~~w~v~l~~i~v 309 (465)
++.||. .++||+||.+.. .....|.|+|||+|+++ +.+++.|+|+.... ..+|.|.+++|.|
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~---~~~~~g~l~~Gg~d~~~-~~~~~~~~p~~~~~--------~~~~~v~l~~i~v 191 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDG---DGGNGGELTFGGIDPSK-YTGDLTYTPVVSNG--------PGYWQVPLDGISV 191 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCC---CCCCCCEEEEcccCccc-cCCceEEEecCCCC--------CCEEEEEeCeEEE
Confidence 777754 389999998741 23468999999999998 89999999998852 4799999999999
Q ss_pred CCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCCccccCCCCCcc
Q 012359 310 GGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTGS 389 (465)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 389 (465)
++..... ......++|||||++++||++++++|++++..... .....+...|... ..
T Consensus 192 ~~~~~~~--------~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~-----~~ 248 (283)
T cd05471 192 GGKSVIS--------SSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVS----------SSDGGYGVDCSPC-----DT 248 (283)
T ss_pred CCceeee--------cCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCccc----------ccCCcEEEeCccc-----Cc
Confidence 9975111 13457899999999999999999999998877654 0122233444443 78
Q ss_pred CCeEEEEEcCCcEEEecCCCeEEEecCCCeEEEEEEecCCCCCCCceeecccceeeeEEEEeCCCCEEEEec
Q 012359 390 FPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQ 461 (465)
Q Consensus 390 ~p~i~f~f~gg~~~~l~~~~yi~~~~~~~~~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfA~ 461 (465)
+|.|+|+| .+|||++|||++|++||+++++||||+
T Consensus 249 ~p~i~f~f-------------------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 249 LPDITFTF-------------------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred CCCEEEEE-------------------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 99999999 489999999999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.95 E-value=2.5e-28 Score=214.66 Aligned_cols=152 Identities=40% Similarity=0.754 Sum_probs=118.6
Q ss_pred EEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCCCCCCCCCCC
Q 012359 89 YSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCNDE 168 (465)
Q Consensus 89 y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~c~~~ 168 (465)
|+++|.||||+|++.|+|||||+++|++|. .+.|+|++|+||+.+.|.++.|...... +..|..
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~------------~~~f~~~~Sst~~~v~C~s~~C~~~~~~---~~~~~~- 64 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP------------DPPFDPSKSSTYRPVPCSSPQCSSAPSF---CPCCCC- 64 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----------------STT-TTSSBEC-BTTSHHHHHCTSS---BTCCTC-
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC------------CcccCCccCCcccccCCCCcchhhcccc---cccCCC-
Confidence 899999999999999999999999999984 7899999999999999999999877653 111111
Q ss_pred CccCCCCCccCCCceeEecCCce-EEEeEEEEEEEcCCc-----ccccEEEeceecCCC---CCCcccccCCCCCCcccc
Q 012359 169 PLATSKNCTQICPSYLVLYGSGL-TEGIALSETLNLPNR-----IIPNFLVGCSVLSSR---QPAGIAGFGRGKTSLPSQ 239 (465)
Q Consensus 169 ~~~~~~~c~~~C~~~~~~Yg~g~-~~G~~~~D~v~~~~~-----~i~~~~fg~~~~~~~---~~~GilGLg~~~~sl~~q 239 (465)
. .+.| .|.+.|++++ +.|.+++|+|+++.. .++++.|||++.... ..+||||||+.++||+.|
T Consensus 65 ---~----~~~C-~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQ 136 (164)
T PF14543_consen 65 ---S----NNSC-PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQ 136 (164)
T ss_dssp ---E----SSEE-EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHH
T ss_pred ---C----cCcc-cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHH
Confidence 1 2466 9999999987 899999999999653 588999999986653 349999999999999999
Q ss_pred c---CCCeeeeecCCCCCCCCCCccceEEecC
Q 012359 240 L---NLDKFSYCLLSHKFDDTTRTSSLILDNG 268 (465)
Q Consensus 240 l---~~~~Fs~~l~~~~~~~~~~~~g~l~~Gg 268 (465)
| ..++|||||.+ ......|.|+||+
T Consensus 137 l~~~~~~~FSyCL~~----~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 137 LASSSGNKFSYCLPS----SSPSSSGFLSFGD 164 (164)
T ss_dssp HHHH--SEEEEEB-S-----SSSSEEEEEECS
T ss_pred HHHhcCCeEEEECCC----CCCCCCEEEEeCc
Confidence 9 77999999987 2344789999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.92 E-value=1.6e-24 Score=190.44 Aligned_cols=157 Identities=39% Similarity=0.767 Sum_probs=122.5
Q ss_pred eEEEEeeEEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHHHHHHHHHhhcccccccccccccCCCCCC
Q 012359 299 YYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRP 378 (465)
Q Consensus 299 ~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 378 (465)
+|.|+|.+|+||++++.+++..++. ..+...++|||||++++||+++|++|++++.+.+.. ...............
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~---~~~~~~~~~~~~~~~ 76 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGA---PGVSREAPPFSGFDL 76 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHT---CT--CEE---TT-S-
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhh---cccccccccCCCCCc
Confidence 5899999999999999999998876 677789999999999999999999999999999883 111111233456778
Q ss_pred ccccCC----CCCccCCeEEEEEcCCcEEEecCCCeEEEecCCCeEEEEEEecCCCCCCCceeecccceeeeEEEEeCCC
Q 012359 379 CFDVPG----EKTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTVVTDREASGGPSIILGNFQMQNYYVEYDLRN 454 (465)
Q Consensus 379 C~~~~~----~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~~~~~~~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD~~~ 454 (465)
||+.+. .....+|+|+|+|+||..++|++++|++.... +..|+++..... ...+..|||..+|++++++||+++
T Consensus 77 Cy~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~-~~~Cla~~~~~~-~~~~~~viG~~~~~~~~v~fDl~~ 154 (161)
T PF14541_consen 77 CYNLSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSP-GVFCLAFVPSDA-DDDGVSVIGNFQQQNYHVVFDLEN 154 (161)
T ss_dssp EEEGGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECT-TEEEESEEEETS-TTSSSEEE-HHHCCTEEEEEETTT
T ss_pred eeeccccccccccccCCeEEEEEeCCcceeeeccceeeeccC-CCEEEEEEccCC-CCCCcEEECHHHhcCcEEEEECCC
Confidence 999877 45678999999998899999999999999875 789999887622 344679999999999999999999
Q ss_pred CEEEEec
Q 012359 455 QRLGFKQ 461 (465)
Q Consensus 455 ~~iGfA~ 461 (465)
+||||+|
T Consensus 155 ~~igF~~ 161 (161)
T PF14541_consen 155 GRIGFAP 161 (161)
T ss_dssp TEEEEEE
T ss_pred CEEEEeC
Confidence 9999996
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=1.2e-22 Score=166.69 Aligned_cols=102 Identities=29% Similarity=0.545 Sum_probs=90.6
Q ss_pred EEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCC-CCCCCCCcccccCCCccCCCCccCCCCCCCCCCCC
Q 012359 91 ISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSF-IPKLSSSSRLLGCQNPKCSWIHHESIQCRDCNDEP 169 (465)
Q Consensus 91 ~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y-~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~c~~~~ 169 (465)
++|.||||||++.|+|||||+++||+|. .|..|.++.++.| +|+.|++++...
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~---~c~~~~~~~~~~~~~~~~sst~~~~~----------------------- 54 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSV---DCQSLAIYSHSSYDDPSASSTYSDNG----------------------- 54 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCC---CCCCcccccccccCCcCCCCCCCCCC-----------------------
Confidence 4799999999999999999999999999 9998877766777 999999987654
Q ss_pred ccCCCCCccCCCceeEecCCceEEEeEEEEEEEcCCcccccEEEeceecCCC------CCCccccc
Q 012359 170 LATSKNCTQICPSYLVLYGSGLTEGIALSETLNLPNRIIPNFLVGCSVLSSR------QPAGIAGF 229 (465)
Q Consensus 170 ~~~~~~c~~~C~~~~~~Yg~g~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~~------~~~GilGL 229 (465)
| .|.+.|++|++.|.++.|+|+|++..++++.|||++.... ..+|||||
T Consensus 55 ----------~-~~~~~Y~~g~~~g~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 55 ----------C-TFSITYGTGSLSGGLSTDTVSIGDIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred ----------c-EEEEEeCCCeEEEEEEEEEEEECCEEECCEEEEEEEecCCccccccccccccCC
Confidence 2 8999999999999999999999999999999999986632 34999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.13 E-value=6.2e-06 Score=65.25 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=66.2
Q ss_pred ccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCCCCCCCCC
Q 012359 87 GGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRDCN 166 (465)
Q Consensus 87 ~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~c~ 166 (465)
+.|++++.|+ .+++.++||||++.+|+... ....+.. .....
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~---~~~~l~~------------~~~~~--------------------- 42 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEE---LAERLGL------------PLTLG--------------------- 42 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHH---HHHHcCC------------CccCC---------------------
Confidence 3589999999 59999999999999999876 2211110 00000
Q ss_pred CCCccCCCCCccCCCceeEecCCce-EEEeEEEEEEEcCCcccccEEEeceecCCCCCCcccccCC
Q 012359 167 DEPLATSKNCTQICPSYLVLYGSGL-TEGIALSETLNLPNRIIPNFLVGCSVLSSRQPAGIAGFGR 231 (465)
Q Consensus 167 ~~~~~~~~~c~~~C~~~~~~Yg~g~-~~G~~~~D~v~~~~~~i~~~~fg~~~~~~~~~~GilGLg~ 231 (465)
. ...+...+|. .......+.+++++..++++.+..........+||||+.+
T Consensus 43 ~--------------~~~~~~~~G~~~~~~~~~~~i~ig~~~~~~~~~~v~d~~~~~~~gIlG~d~ 94 (96)
T cd05483 43 G--------------KVTVQTANGRVRAARVRLDSLQIGGITLRNVPAVVLPGDALGVDGLLGMDF 94 (96)
T ss_pred C--------------cEEEEecCCCccceEEEcceEEECCcEEeccEEEEeCCcccCCceEeChHH
Confidence 1 5666777776 4555568999999999998888887655434699999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.64 E-value=0.0094 Score=49.33 Aligned_cols=99 Identities=11% Similarity=0.121 Sum_probs=64.1
Q ss_pred cccCCcccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCCC
Q 012359 81 ISSHSYGGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESI 160 (465)
Q Consensus 81 l~~~~~~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~ 160 (465)
+.-..+|.|++++.|.. +++.+++|||++.+-+... .-... ..++.. ..
T Consensus 4 i~~~~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~---~A~~L------gl~~~~------~~-------------- 52 (121)
T TIGR02281 4 LAKDGDGHFYATGRVNG--RNVRFLVDTGATSVALNEE---DAQRL------GLDLNR------LG-------------- 52 (121)
T ss_pred EEEcCCCeEEEEEEECC--EEEEEEEECCCCcEEcCHH---HHHHc------CCCccc------CC--------------
Confidence 33345789999999975 7999999999999988765 11000 001100 00
Q ss_pred CCCCCCCCCccCCCCCccCCCceeEecCCceE-EEeEEEEEEEcCCcccccEEEeceecCCCCCCcccccCC
Q 012359 161 QCRDCNDEPLATSKNCTQICPSYLVLYGSGLT-EGIALSETLNLPNRIIPNFLVGCSVLSSRQPAGIAGFGR 231 (465)
Q Consensus 161 ~c~~c~~~~~~~~~~c~~~C~~~~~~Yg~g~~-~G~~~~D~v~~~~~~i~~~~fg~~~~~~~~~~GilGLg~ 231 (465)
. ...+.=..|.+ ...+.-|.+++|+..+.++.+.++..... .+|+||+.+
T Consensus 53 ------~--------------~~~~~ta~G~~~~~~~~l~~l~iG~~~~~nv~~~v~~~~~~-~~~LLGm~f 103 (121)
T TIGR02281 53 ------Y--------------TVTVSTANGQIKAARVTLDRVAIGGIVVNDVDAMVAEGGAL-SESLLGMSF 103 (121)
T ss_pred ------c--------------eEEEEeCCCcEEEEEEEeCEEEECCEEEeCcEEEEeCCCcC-CceEcCHHH
Confidence 0 23333334553 34557899999999999999887654322 389999885
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.80 E-value=0.038 Score=42.62 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=27.0
Q ss_pred EEEeEEEEEEEcCCcccccEEEeceecCCCCCCcccccC
Q 012359 192 TEGIALSETLNLPNRIIPNFLVGCSVLSSRQPAGIAGFG 230 (465)
Q Consensus 192 ~~G~~~~D~v~~~~~~i~~~~fg~~~~~~~~~~GilGLg 230 (465)
......-+.+++++..+.++.|-... .....+||||+-
T Consensus 52 ~~~~~~~~~i~ig~~~~~~~~~~v~~-~~~~~~~iLG~d 89 (90)
T PF13650_consen 52 TVYRGRVDSITIGGITLKNVPFLVVD-LGDPIDGILGMD 89 (90)
T ss_pred EEEEEEEEEEEECCEEEEeEEEEEEC-CCCCCEEEeCCc
Confidence 33445566899999988888887766 233448999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.10 E-value=0.11 Score=43.28 Aligned_cols=92 Identities=11% Similarity=0.138 Sum_probs=60.6
Q ss_pred CcccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCccCCCCCCC
Q 012359 85 SYGGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHHESIQCRD 164 (465)
Q Consensus 85 ~~~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~~~~~c~~ 164 (465)
....+++++.|+. +++.+++|||++..++... .+..+... ....
T Consensus 13 ~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~---~a~~lgl~------~~~~------------------------- 56 (124)
T cd05479 13 KVPMLYINVEING--VPVKAFVDSGAQMTIMSKA---CAEKCGLM------RLID------------------------- 56 (124)
T ss_pred eeeEEEEEEEECC--EEEEEEEeCCCceEEeCHH---HHHHcCCc------cccC-------------------------
Confidence 3457899999985 8999999999999998766 33222210 0000
Q ss_pred CCCCCccCCCCCccCCCcee-EecCCc--eEEEeEEEEEEEcCCcccccEEEeceecCCCCCCcccccCC
Q 012359 165 CNDEPLATSKNCTQICPSYL-VLYGSG--LTEGIALSETLNLPNRIIPNFLVGCSVLSSRQPAGIAGFGR 231 (465)
Q Consensus 165 c~~~~~~~~~~c~~~C~~~~-~~Yg~g--~~~G~~~~D~v~~~~~~i~~~~fg~~~~~~~~~~GilGLg~ 231 (465)
. .+. ...|.| ...|....+.+.+++...+ ..|.+.... ..|+|||+-+
T Consensus 57 --~--------------~~~~~~~g~g~~~~~g~~~~~~l~i~~~~~~-~~~~Vl~~~--~~d~ILG~d~ 107 (124)
T cd05479 57 --K--------------RFQGIAKGVGTQKILGRIHLAQVKIGNLFLP-CSFTVLEDD--DVDFLIGLDM 107 (124)
T ss_pred --c--------------ceEEEEecCCCcEEEeEEEEEEEEECCEEee-eEEEEECCC--CcCEEecHHH
Confidence 0 222 233433 2567777889999998775 677765433 4499999874
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.09 E-value=0.1 Score=43.41 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.6
Q ss_pred ceeecccceeeeEEEEeCCCCEEEE
Q 012359 435 SIILGNFQMQNYYVEYDLRNQRLGF 459 (465)
Q Consensus 435 ~~ILG~~fl~~~y~vfD~~~~~iGf 459 (465)
..|||..||+.+-.+.|+.+++|-|
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 4799999999999999999998854
No 32
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=94.49 E-value=0.16 Score=42.80 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=25.4
Q ss_pred ceeecccceeeeEEEEeCCCCEEEEecC
Q 012359 435 SIILGNFQMQNYYVEYDLRNQRLGFKQQ 462 (465)
Q Consensus 435 ~~ILG~~fl~~~y~vfD~~~~~iGfA~~ 462 (465)
..|||..+|+.+..+-|..+++|-|-..
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 4899999999999999999999998753
No 33
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=94.14 E-value=0.68 Score=45.15 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=31.6
Q ss_pred ecCCceEEEeEEEEEEEcCCcc---cccEEEecee----------cC-------CCCCCcccccCCC
Q 012359 186 LYGSGLTEGIALSETLNLPNRI---IPNFLVGCSV----------LS-------SRQPAGIAGFGRG 232 (465)
Q Consensus 186 ~Yg~g~~~G~~~~D~v~~~~~~---i~~~~fg~~~----------~~-------~~~~~GilGLg~~ 232 (465)
.|++|...|.+.+-+|+|++.. +|=|.++-.. .. .....||||+|.-
T Consensus 83 ~F~sgytWGsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 83 QFASGYTWGSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hccCcccccceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 4788889999999999999873 4444443321 00 1123999999963
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.24 E-value=0.45 Score=36.97 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=25.0
Q ss_pred EEEEEeeCCCCcEEEEEEEcCCCceeEeCC
Q 012359 89 YSISLSFGTPPQIIPFILDTGSHLVWFPCT 118 (465)
Q Consensus 89 y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~ 118 (465)
|++++.|+. +++.+++||||+..++...
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHH
Confidence 578899985 9999999999999999876
No 35
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=90.53 E-value=1.2 Score=35.85 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.2
Q ss_pred ceeecccceeeeEEEEeCCCCEE
Q 012359 435 SIILGNFQMQNYYVEYDLRNQRL 457 (465)
Q Consensus 435 ~~ILG~~fl~~~y~vfD~~~~~i 457 (465)
..+||..||+.+-++.|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 57999999999999999987753
No 36
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=87.69 E-value=1.2 Score=36.77 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=27.0
Q ss_pred ceeEEEEeeEEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHH
Q 012359 297 SVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPL 350 (465)
Q Consensus 297 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i 350 (465)
.++|.++ +.|+|+.+ .++||||++.+.+++++.+++
T Consensus 9 ~g~~~v~---~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 4556555 56788754 399999999999999876553
No 37
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=85.42 E-value=1.5 Score=32.41 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=28.8
Q ss_pred CcccEEEEEeeCCCCcEEEEEEEcCCCceeEeCC
Q 012359 85 SYGGYSISLSFGTPPQIIPFILDTGSHLVWFPCT 118 (465)
Q Consensus 85 ~~~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~ 118 (465)
..+.+++.+.||. +.+.+++|||++...+..+
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISES 36 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHH
Confidence 4578999999996 9999999999999998876
No 38
>PF13650 Asp_protease_2: Aspartyl protease
Probab=84.68 E-value=1.4 Score=33.65 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=17.9
Q ss_pred ceEEccccceeecChhhhHHH
Q 012359 330 GTIVDSGTTFTFMAPELFEPL 350 (465)
Q Consensus 330 ~~iiDSGt~~~~lp~~~~~~i 350 (465)
.++||||++.+.+.++.++++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 499999999999999876654
No 39
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=83.35 E-value=4.8 Score=36.01 Aligned_cols=87 Identities=10% Similarity=0.080 Sum_probs=59.3
Q ss_pred eeecccCCcccEEEEEeeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCcc
Q 012359 78 TTNISSHSYGGYSISLSFGTPPQIIPFILDTGSHLVWFPCTNHYQCKYCSSSKIPSFIPKLSSSSRLLGCQNPKCSWIHH 157 (465)
Q Consensus 78 ~~~l~~~~~~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~~~~~C~~C~~~~~~~y~p~~SsT~~~~~c~~~~c~~~~~ 157 (465)
...+.-..+|.|.++..|-- |++.+++|||-+.+-+... .-. .-.||.+.. .
T Consensus 95 ~v~Lak~~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~---dA~------RlGid~~~l------~----------- 146 (215)
T COG3577 95 EVSLAKSRDGHFEANGRVNG--KKVDFLVDTGATSVALNEE---DAR------RLGIDLNSL------D----------- 146 (215)
T ss_pred EEEEEecCCCcEEEEEEECC--EEEEEEEecCcceeecCHH---HHH------HhCCCcccc------C-----------
Confidence 45566667899999999974 9999999999999888766 111 112333211 0
Q ss_pred CCCCCCCCCCCCccCCCCCccCCCceeEecCCceEE-EeEEEEEEEcCCcccccEEEec
Q 012359 158 ESIQCRDCNDEPLATSKNCTQICPSYLVLYGSGLTE-GIALSETLNLPNRIIPNFLVGC 215 (465)
Q Consensus 158 ~~~~c~~c~~~~~~~~~~c~~~C~~~~~~Yg~g~~~-G~~~~D~v~~~~~~i~~~~fg~ 215 (465)
- ++.+.-..|... -.+--|.|.||+..+.++.=-+
T Consensus 147 ---------y--------------~~~v~TANG~~~AA~V~Ld~v~IG~I~~~nV~A~V 182 (215)
T COG3577 147 ---------Y--------------TITVSTANGRARAAPVTLDRVQIGGIRVKNVDAMV 182 (215)
T ss_pred ---------C--------------ceEEEccCCccccceEEeeeEEEccEEEcCchhhe
Confidence 0 455555667744 4567899999998877665444
No 40
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=81.20 E-value=2.6 Score=32.57 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=24.3
Q ss_pred EEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHH
Q 012359 306 RITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPL 350 (465)
Q Consensus 306 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i 350 (465)
.+.|+|+.+. ++||||++.+.++.+.+..+
T Consensus 4 ~~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 3678888764 88999999999999876654
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=79.65 E-value=3.4 Score=30.45 Aligned_cols=29 Identities=34% Similarity=0.763 Sum_probs=23.5
Q ss_pred EEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHH
Q 012359 307 ITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPL 350 (465)
Q Consensus 307 i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i 350 (465)
+.+++..+. +++|||++...++.+..+.+
T Consensus 13 ~~I~g~~~~---------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK---------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE---------------EEEeCCCcceecCHHHHHHh
Confidence 567776653 99999999999999876664
No 42
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=77.41 E-value=4.4 Score=31.17 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=17.4
Q ss_pred ceEEccccceeecChhhhHHH
Q 012359 330 GTIVDSGTTFTFMAPELFEPL 350 (465)
Q Consensus 330 ~~iiDSGt~~~~lp~~~~~~i 350 (465)
.++||||++.+.++.+..+.+
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 389999999999999765543
No 43
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=77.41 E-value=5.4 Score=34.38 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=18.3
Q ss_pred CceEEccccceeecChhhhHHH
Q 012359 329 GGTIVDSGTTFTFMAPELFEPL 350 (465)
Q Consensus 329 ~~~iiDSGt~~~~lp~~~~~~i 350 (465)
..++||||++....-.++.+.|
T Consensus 46 i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEEeCCCccceeehhhHHhh
Confidence 4599999999999988876665
No 44
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=76.65 E-value=3.7 Score=32.19 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.9
Q ss_pred EEEEeeCCCCcEEEEEEEcCCCceeEeCC
Q 012359 90 SISLSFGTPPQIIPFILDTGSHLVWFPCT 118 (465)
Q Consensus 90 ~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~ 118 (465)
+.+|.|.. +++.+++||||+.+-++..
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSG
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccc
Confidence 56778875 8999999999999888766
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=76.04 E-value=3.7 Score=31.42 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=18.1
Q ss_pred ceEEccccceeecChhhhHHH
Q 012359 330 GTIVDSGTTFTFMAPELFEPL 350 (465)
Q Consensus 330 ~~iiDSGt~~~~lp~~~~~~i 350 (465)
.+++|||.+.+.++++..+.+
T Consensus 11 ~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 11 VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEECCCCeEEECHHHhhhc
Confidence 389999999999999877664
No 46
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=75.64 E-value=5.7 Score=32.82 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=22.8
Q ss_pred EEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHHH
Q 012359 306 RITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPL 350 (465)
Q Consensus 306 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i 350 (465)
.+++||+.+. |+||||+..+.++.+.++++
T Consensus 28 ~~~ing~~vk---------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK---------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE---------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE---------------EEEeCCCCccccCHHHHHHc
Confidence 4678888864 99999999999999876663
No 47
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=75.13 E-value=17 Score=27.99 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=17.5
Q ss_pred CCCCceEEccccceeecChhh
Q 012359 326 DGNGGTIVDSGTTFTFMAPEL 346 (465)
Q Consensus 326 ~~~~~~iiDSGt~~~~lp~~~ 346 (465)
..+...+||||+....+|...
T Consensus 7 ~s~~~fLVDTGA~vSviP~~~ 27 (89)
T cd06094 7 TSGLRFLVDTGAAVSVLPASS 27 (89)
T ss_pred CCCcEEEEeCCCceEeecccc
Confidence 445679999999999999864
No 48
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=73.23 E-value=2.7 Score=32.96 Aligned_cols=21 Identities=33% Similarity=0.240 Sum_probs=10.1
Q ss_pred CcchhhHHHHHHHHHHHHhhhc
Q 012359 1 MASYISALCLSFIFFFTLLSIF 22 (465)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (465)
|+|- .+|+|.|+|.++||+.+
T Consensus 1 MaSK-~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASK-AFLLLGLLLAALLLISS 21 (95)
T ss_pred Cchh-HHHHHHHHHHHHHHHHh
Confidence 8855 44444444444444333
No 49
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=69.26 E-value=9.5 Score=34.26 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=17.7
Q ss_pred CceeecccceeeeEEEEeCCCCEEEEe
Q 012359 434 PSIILGNFQMQNYYVEYDLRNQRLGFK 460 (465)
Q Consensus 434 ~~~ILG~~fl~~~y~vfD~~~~~iGfA 460 (465)
-..|||..|+|.++=....+ .+|-|-
T Consensus 91 ~d~IlG~NF~r~y~Pfiq~~-~~I~f~ 116 (201)
T PF02160_consen 91 IDIILGNNFLRLYEPFIQTE-DRIQFH 116 (201)
T ss_pred CCEEecchHHHhcCCcEEEc-cEEEEE
Confidence 45899999999877555544 345553
No 50
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=68.35 E-value=14 Score=30.58 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=22.8
Q ss_pred ccEEEEEeeCCCCcEEEEEEEcCCCceeEeCC
Q 012359 87 GGYSISLSFGTPPQIIPFILDTGSHLVWFPCT 118 (465)
Q Consensus 87 ~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~ 118 (465)
...|+++.|+. +++++++|||.-.+-+...
T Consensus 23 ~mLyI~~~ing--~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 23 SMLYINCKING--VPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp ---EEEEEETT--EEEEEEEETT-SS-EEEHH
T ss_pred ceEEEEEEECC--EEEEEEEeCCCCccccCHH
Confidence 57899999996 9999999999999888765
No 51
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=67.67 E-value=7 Score=30.60 Aligned_cols=26 Identities=12% Similarity=0.572 Sum_probs=21.2
Q ss_pred EEEECCEEEEeeccceecccCCCCceEEccccceeecChhh
Q 012359 306 RITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPEL 346 (465)
Q Consensus 306 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~ 346 (465)
.|.++|+.+. ++||||+..+.++.+.
T Consensus 9 ~v~i~g~~i~---------------~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKIK---------------ALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEEE---------------EEEETTBSSEEESSGG
T ss_pred EEeECCEEEE---------------EEEecCCCcceecccc
Confidence 4677887654 9999999999999864
No 52
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=62.75 E-value=17 Score=32.72 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=26.7
Q ss_pred ceeEEEEeeEEEECCEEEEeeccceecccCCCCceEEccccceeecChhhhHH
Q 012359 297 SVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEP 349 (465)
Q Consensus 297 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~ 349 (465)
.++|.+ ...|||+.+. .+||||.+.+.++++....
T Consensus 103 ~GHF~a---~~~VNGk~v~---------------fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 103 DGHFEA---NGRVNGKKVD---------------FLVDTGATSVALNEEDARR 137 (215)
T ss_pred CCcEEE---EEEECCEEEE---------------EEEecCcceeecCHHHHHH
Confidence 344444 4788998875 8999999999999976444
No 53
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=59.99 E-value=12 Score=28.78 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.0
Q ss_pred EEeeCCCCcEEEEEEEcCCCceeEeCC
Q 012359 92 SLSFGTPPQIIPFILDTGSHLVWFPCT 118 (465)
Q Consensus 92 ~i~iGtP~q~~~v~iDTGS~~~Wv~~~ 118 (465)
.+.|+ .|.+.+++|||++++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 59999999999999999865
No 54
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=59.92 E-value=11 Score=28.67 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.7
Q ss_pred EEeeCCCCcEEEEEEEcCCCceeEeCC
Q 012359 92 SLSFGTPPQIIPFILDTGSHLVWFPCT 118 (465)
Q Consensus 92 ~i~iGtP~q~~~v~iDTGS~~~Wv~~~ 118 (465)
.+.|. .+++.+++|||++.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 34555 48999999999999999876
No 55
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=58.98 E-value=12 Score=32.21 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=22.5
Q ss_pred EEEEeeCCCCcEEEEEEEcCCCceeEeCC
Q 012359 90 SISLSFGTPPQIIPFILDTGSHLVWFPCT 118 (465)
Q Consensus 90 ~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~ 118 (465)
...+.++....+++++|||||+..++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 33445555568999999999999998876
No 56
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=58.79 E-value=12 Score=29.08 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=17.9
Q ss_pred ceEEccccceeecChhhhHHH
Q 012359 330 GTIVDSGTTFTFMAPELFEPL 350 (465)
Q Consensus 330 ~~iiDSGt~~~~lp~~~~~~i 350 (465)
.+.+|||++...+|...+..+
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred EEEEecCCEEEeccHHHHhhh
Confidence 488999999999999876654
No 57
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=53.80 E-value=8.8 Score=31.41 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=17.7
Q ss_pred eEEccccc-eeecChhhhHHH
Q 012359 331 TIVDSGTT-FTFMAPELFEPL 350 (465)
Q Consensus 331 ~iiDSGt~-~~~lp~~~~~~i 350 (465)
.+||||.+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999987775
No 58
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=36.99 E-value=21 Score=28.23 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=15.6
Q ss_pred CceEEccccceeecChhh
Q 012359 329 GGTIVDSGTTFTFMAPEL 346 (465)
Q Consensus 329 ~~~iiDSGt~~~~lp~~~ 346 (465)
..++||||++.++++...
T Consensus 12 ~~~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 12 FNVLLDTGSSNLWVPSVD 29 (109)
T ss_pred EEEEEeCCCCCEEEeCCC
Confidence 568999999999999754
No 59
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=30.80 E-value=62 Score=25.82 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=20.1
Q ss_pred EEEeeCCCC----cEEEEEEEcCCCcee-EeC
Q 012359 91 ISLSFGTPP----QIIPFILDTGSHLVW-FPC 117 (465)
Q Consensus 91 ~~i~iGtP~----q~~~v~iDTGS~~~W-v~~ 117 (465)
++|.|..|. -++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 577888872 368999999999764 443
No 60
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=29.27 E-value=47 Score=32.20 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=15.3
Q ss_pred CceEEccccceeecChhh
Q 012359 329 GGTIVDSGTTFTFMAPEL 346 (465)
Q Consensus 329 ~~~iiDSGt~~~~lp~~~ 346 (465)
..++||||++.+++|...
T Consensus 24 ~~v~~DTGSs~lWv~~~~ 41 (317)
T cd06098 24 FTVIFDTGSSNLWVPSSK 41 (317)
T ss_pred EEEEECCCccceEEecCC
Confidence 459999999999999743
No 61
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=28.47 E-value=1.6e+02 Score=28.97 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=29.7
Q ss_pred EEEEEEecCCCCCCCceeecccceeeeEEEEeCCCCEEEEecC
Q 012359 420 VCLTVVTDREASGGPSIILGNFQMQNYYVEYDLRNQRLGFKQQ 462 (465)
Q Consensus 420 ~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfA~~ 462 (465)
.|-..+... ......||...||++--.-|++++++-|+..
T Consensus 307 ~c~ftV~d~---~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 307 PCSFTVLDR---RDMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred ccceEEecC---CCcchhhhHHHHHhccceeecccCeEEecCC
Confidence 475444432 2234789999999999999999998887653
No 62
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=23.61 E-value=65 Score=31.17 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=14.7
Q ss_pred CceEEccccceeecChh
Q 012359 329 GGTIVDSGTTFTFMAPE 345 (465)
Q Consensus 329 ~~~iiDSGt~~~~lp~~ 345 (465)
..++||||++.+++|..
T Consensus 24 ~~v~~DTGS~~~wv~~~ 40 (317)
T cd05478 24 FTVIFDTGSSNLWVPSV 40 (317)
T ss_pred EEEEEeCCCccEEEecC
Confidence 45999999999999964
No 63
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=23.45 E-value=76 Score=30.00 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=15.4
Q ss_pred CceEEccccceeecChhh
Q 012359 329 GGTIVDSGTTFTFMAPEL 346 (465)
Q Consensus 329 ~~~iiDSGt~~~~lp~~~ 346 (465)
..++||||++.+++|..-
T Consensus 14 ~~v~~DTGS~~~wv~~~~ 31 (278)
T cd06097 14 LNLDLDTGSSDLWVFSSE 31 (278)
T ss_pred EEEEEeCCCCceeEeeCC
Confidence 459999999999999753
No 64
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=23.06 E-value=83 Score=29.42 Aligned_cols=42 Identities=26% Similarity=0.439 Sum_probs=29.0
Q ss_pred eeeecccCCcccEEEE---EeeCC-----CCcEEEEEEEcCCCceeEeCC
Q 012359 77 TTTNISSHSYGGYSIS---LSFGT-----PPQIIPFILDTGSHLVWFPCT 118 (465)
Q Consensus 77 ~~~~l~~~~~~~y~~~---i~iGt-----P~q~~~v~iDTGS~~~Wv~~~ 118 (465)
...|+.......|.+. |.||. ......++||||++.+|++..
T Consensus 170 ~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~ 219 (283)
T cd05471 170 TYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSS 219 (283)
T ss_pred EEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHH
Confidence 3444444324566655 46665 246789999999999999977
No 65
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=23.04 E-value=1.1e+02 Score=25.50 Aligned_cols=30 Identities=7% Similarity=0.174 Sum_probs=25.5
Q ss_pred ccEEEEEeeCCCCcEEEEEEEcCCCceeEeCC
Q 012359 87 GGYSISLSFGTPPQIIPFILDTGSHLVWFPCT 118 (465)
Q Consensus 87 ~~y~~~i~iGtP~q~~~v~iDTGS~~~Wv~~~ 118 (465)
..-.+.+.|.+ ++..++||+|++..++...
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 35677888887 9999999999999998766
No 66
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=22.94 E-value=69 Score=31.13 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=14.8
Q ss_pred CceEEccccceeecChh
Q 012359 329 GGTIVDSGTTFTFMAPE 345 (465)
Q Consensus 329 ~~~iiDSGt~~~~lp~~ 345 (465)
..++||||++.+++|..
T Consensus 20 ~~v~~DTGSs~~Wv~~~ 36 (325)
T cd05490 20 FTVVFDTGSSNLWVPSV 36 (325)
T ss_pred EEEEEeCCCccEEEEcC
Confidence 45999999999999864
No 67
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=22.66 E-value=65 Score=31.25 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.7
Q ss_pred CceEEccccceeecChh
Q 012359 329 GGTIVDSGTTFTFMAPE 345 (465)
Q Consensus 329 ~~~iiDSGt~~~~lp~~ 345 (465)
..++||||++.+++|..
T Consensus 24 ~~v~~DTGSs~~wv~~~ 40 (320)
T cd05488 24 FKVILDTGSSNLWVPSV 40 (320)
T ss_pred EEEEEecCCcceEEEcC
Confidence 45999999999999964
No 68
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=21.12 E-value=79 Score=30.75 Aligned_cols=18 Identities=11% Similarity=0.230 Sum_probs=15.3
Q ss_pred CceEEccccceeecChhh
Q 012359 329 GGTIVDSGTTFTFMAPEL 346 (465)
Q Consensus 329 ~~~iiDSGt~~~~lp~~~ 346 (465)
..++||||++.+++|...
T Consensus 22 ~~v~~DTGSs~~Wv~~~~ 39 (326)
T cd05487 22 FKVVFDTGSSNLWVPSSK 39 (326)
T ss_pred EEEEEeCCccceEEccCC
Confidence 459999999999999743
No 69
>PTZ00147 plasmepsin-1; Provisional
Probab=20.92 E-value=85 Score=32.36 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.3
Q ss_pred CceEEccccceeecChhh
Q 012359 329 GGTIVDSGTTFTFMAPEL 346 (465)
Q Consensus 329 ~~~iiDSGt~~~~lp~~~ 346 (465)
..++||||++.+++|...
T Consensus 153 f~Vi~DTGSsdlWVps~~ 170 (453)
T PTZ00147 153 FNFIFDTGSANLWVPSIK 170 (453)
T ss_pred EEEEEeCCCCcEEEeecC
Confidence 459999999999999643
No 70
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=20.89 E-value=4.3e+02 Score=20.97 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=22.7
Q ss_pred EEEEEEecCCCCCCCceeecccceeeeEEEEeCCC
Q 012359 420 VCLTVVTDREASGGPSIILGNFQMQNYYVEYDLRN 454 (465)
Q Consensus 420 ~C~~~i~~~~~~~~~~~ILG~~fl~~~y~vfD~~~ 454 (465)
.|-..+... .....+||.-.||++--.-|+++
T Consensus 72 ~CSftVld~---~~~d~llGLdmLkrhqc~IdL~k 103 (103)
T cd05480 72 ECSAQVVDD---NEKNFSLGLQTLKSLKCVINLEK 103 (103)
T ss_pred eEEEEEEcC---CCcceEeeHHHHhhcceeeeccC
Confidence 475555442 23458999999999998888764
No 71
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=20.78 E-value=71 Score=31.13 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=15.3
Q ss_pred CceEEccccceeecChhh
Q 012359 329 GGTIVDSGTTFTFMAPEL 346 (465)
Q Consensus 329 ~~~iiDSGt~~~~lp~~~ 346 (465)
..++||||++.+++|-..
T Consensus 17 ~~v~~DTGS~~~wv~~~~ 34 (326)
T cd06096 17 QSLILDTGSSSLSFPCSQ 34 (326)
T ss_pred EEEEEeCCCCceEEecCC
Confidence 459999999999998753
Done!