BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012360
(465 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 278/462 (60%), Positives = 357/462 (77%), Gaps = 2/462 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HAHVTKT LDSD+YVGN+L+H YG TDAR LFD MP RD+ SWNTL+ YND
Sbjct: 93 GKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTLLGAYND 152
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
++ EVL+LFK++++EGI D I++VI+FSAC ++ +GK VH Y KVG+ L++
Sbjct: 153 --NAVEVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPALSL 210
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL +Y KC EMD A LF EM + R++VS IL NGY+DM +DLAR +FD++ KD
Sbjct: 211 SNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKD 270
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W SM+H VKAK P++A+ELF+KM +E V PDE MVSVL+AC+SL++LQ GRL HR
Sbjct: 271 LVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEPDETTMVSVLAACASLADLQNGRLAHR 330
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
FI+QNN QD FV TALIDMY+KCGSLEEA+VTFYK D +DV TWTT IEGLAN+G G++
Sbjct: 331 FIIQNNPRQDLFVGTALIDMYAKCGSLEEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDK 390
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F +ME++GIKPN+ATFVSVL AC SGL+ EGC LF+RM Y++QP IEH CL+
Sbjct: 391 ALSLFTEMEKQGIKPNQATFVSVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEHLGCLL 450
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+LSRAGLL+QAEEFIK+MP ++K I+ K LLSAC+ + E+DLG+K+AN + +L +QSH
Sbjct: 451 DILSRAGLLHQAEEFIKLMPPKEKIIANKTLLSACMNHLEYDLGEKIANGLTELSSQSHA 510
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++LLSNFYAL G W EVA+ RR MKE+ RK PG S +D+K
Sbjct: 511 THILLSNFYALAGQWAEVAKTRRVMKEIDIRKVPGISSVDIK 552
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 173/407 (42%), Gaps = 73/407 (17%)
Query: 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCY 109
+WN L+ ++ ++++ I V DK T + AC R+ L GK VH +
Sbjct: 40 TWNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTYPAMLKACWRMGSLSKGKEVHAH 99
Query: 110 ATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169
TK GL+ + + NALL +Y ++ +A RLFD M R++ S N L+ Y D +
Sbjct: 100 VTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGM-PHRDLASWNTLLGAYNDNAV--- 155
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
E L LFK+M+ EG+ D MV V SAC
Sbjct: 156 ------------------------------EVLVLFKRMMYEGIGGDHISMVIVFSACGK 185
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY------------- 276
+ ++G+ VH ++++ I + AL+ +Y+KCG ++ A F
Sbjct: 186 IGGTEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTI 245
Query: 277 -------------------KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
+ KD+V+W +MI +A+ +F +ME + ++P+
Sbjct: 246 LFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEPD 305
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEE 375
E T VSVLAAC + G +L R + + P + FV L+D+ ++ G L +A
Sbjct: 306 ETTMVSVLAACASLADLQNG-RLAHRF--IIQNNPRQDLFVGTALIDMYAKCGSLEEAMV 362
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
M + D F ++ + + D + M K G + ++A
Sbjct: 363 TFYKMDSRDVF-TWTTAIEGLANHGHGDKALSLFTEMEKQGIKPNQA 408
>gi|224056823|ref|XP_002299041.1| predicted protein [Populus trichocarpa]
gi|222846299|gb|EEE83846.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/463 (61%), Positives = 351/463 (75%), Gaps = 3/463 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H HV KT LDSDIYV N+L+HFYG + TDA LFD+MP RDV SWN+LM IYN
Sbjct: 95 GKQVHTHVIKTGLDSDIYVQNALVHFYGSVGNSTDACFLFDRMPDRDVASWNSLMGIYNT 154
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACAR--LEKLHYGKTVHCYATKVGLEYML 119
+ EV++LFK+L+ + ADKI+LVI+ SACA+ +E L YG++VH Y KVG L
Sbjct: 155 NNSFTEVMVLFKKLMCGCVKADKISLVIVLSACAQAQMEGLEYGRSVHGYVIKVGFGCFL 214
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N++NALL Y KCKE+D+A ++FDE ++VS ILIN Y++M L+DLAR+VFDEIVD
Sbjct: 215 NVDNALLNFYIKCKEIDDASKMFDEFVHEGDVVSYTILINAYVEMGLIDLARDVFDEIVD 274
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KD VLW M+H VKA+ P EAL+LF+KM GV PDE MVSVL AC+S+S+LQ RL+
Sbjct: 275 KDRVLWNLMVHAYVKARCPNEALDLFEKMDSAGVIPDENTMVSVLLACASISDLQCARLL 334
Query: 240 HRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
HRFI +N N+ QD F+KTALI MYSKCGS+EEALVTFYK + DV TWT MIEGLAN G
Sbjct: 335 HRFINRNSNVRQDVFLKTALITMYSKCGSVEEALVTFYKMEYTDVFTWTAMIEGLANNGY 394
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
GNEAL +F +ME +GI+PNE+T VSVL AC HSGL+ EGCQLF+ M Y++Q +EHF
Sbjct: 395 GNEALSMFNRMENQGIRPNESTLVSVLTACIHSGLVKEGCQLFKSMVSDYKMQLKMEHFG 454
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
CL+DLLSRAGLL+QAEEFI+++ E++ I+YK LLSAC+ YSEFD GKKVAN M KL +
Sbjct: 455 CLIDLLSRAGLLHQAEEFIQLLLPEERLIAYKTLLSACMKYSEFDFGKKVANEMSKLSSN 514
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
SHE +LLSNFYAL G W +VAE R+ +KE TRK PG S +D
Sbjct: 515 SHETRILLSNFYALAGQWAQVAETRKFIKEFDTRKAPGMSFVD 557
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 130/314 (41%), Gaps = 68/314 (21%)
Query: 51 SWNTLMSIYNDFSDSGEVLILFKQLIFE--GIVADKITLVILFSACARLEKLHYGKTVHC 108
+WN L+ Y+ + IL + D T L AC+RL GK VH
Sbjct: 41 TWNCLIRAYSRSPTAPIKAILVYNFFIKTCSTRPDNYTYPCLLKACSRLFTDSNGKQVHT 100
Query: 109 YATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168
+ K GL+ + ++NAL+ Y +A LFD M R++ S N L+ Y
Sbjct: 101 HVIKTGLDSDIYVQNALVHFYGSVGNSTDACFLFDRMPD-RDVASWNSLMGIYN------ 153
Query: 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC- 227
F E+ +VL++ +M GCVKA D+ +V VLSAC
Sbjct: 154 -TNNSFTEV----MVLFKKLMCGCVKA--------------------DKISLVIVLSACA 188
Query: 228 -SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF----YKTDC-- 280
+ + L+YGR VH ++++ V AL++ Y KC +++A F ++ D
Sbjct: 189 QAQMEGLEYGRSVHGYVIKVGFGCFLNVDNALLNFYIKCKEIDDASKMFDEFVHEGDVVS 248
Query: 281 --------------------------KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
KD V W M+ NEAL +F +M+ G+
Sbjct: 249 YTILINAYVEMGLIDLARDVFDEIVDKDRVLWNLMVHAYVKARCPNEALDLFEKMDSAGV 308
Query: 315 KPNEATFVSVLAAC 328
P+E T VSVL AC
Sbjct: 309 IPDENTMVSVLLAC 322
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 101/230 (43%), Gaps = 9/230 (3%)
Query: 185 WRSMMHGCVKAKQ-PEEALELFKKMIDEGVT-PDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W ++ ++ P +A+ ++ I T PD +L ACS L G+ VH
Sbjct: 42 WNCLIRAYSRSPTAPIKAILVYNFFIKTCSTRPDNYTYPCLLKACSRLFTDSNGKQVHTH 101
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+++ + D +V+ AL+ Y G+ +A F + +DV +W +++ E
Sbjct: 102 VIKTGLDSDIYVQNALVHFYGSVGNSTDACFLFDRMPDRDVASWNSLMGIYNTNNSFTEV 161
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV---- 358
+ +F ++ +K ++ + V VL+AC + + EG + R + G Y ++ F+
Sbjct: 162 MVLFKKLMCGCVKADKISLVIVLSACAQAQM--EGLEYGRSVHG-YVIKVGFGCFLNVDN 218
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
L++ + + A + E +SY L++A + DL + V
Sbjct: 219 ALLNFYIKCKEIDDASKMFDEFVHEGDVVSYTILINAYVEMGLIDLARDV 268
>gi|255564351|ref|XP_002523172.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537579|gb|EEF39203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 278/462 (60%), Positives = 348/462 (75%), Gaps = 4/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +H H+ K LDSDIYV N+L+HFYG + AR+LFDKM RD+ SWNT M
Sbjct: 102 MGQLVHTHLIKIGLDSDIYVQNALLHFYGSIKQLNYARLLFDKMYERDITSWNTFMGASY 161
Query: 61 DFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARL---EKLHYGKTVHCYATKVGLE 116
S+S +++ LFK+LI EG+ ADKITLVILFSA A+ E L YG VH A K+GL
Sbjct: 162 ASSNSVIDLMDLFKRLISEGVGADKITLVILFSAFAQAQCDESLEYGTAVHSCAIKMGLV 221
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
MLN+ NALL MY K ++MD A R+FDEMGS+++ VS ILINGY++ L+DLA ++F +
Sbjct: 222 SMLNVSNALLNMYTKYRQMDAASRVFDEMGSKKDAVSHAILINGYVEKGLIDLASDIFYQ 281
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
I DKD+VLW M+HG +KAK+P +ALELFKKM +EG+ PDE MV +L+AC+SLS+LQYG
Sbjct: 282 IFDKDLVLWNVMLHGYIKAKRPIDALELFKKMDNEGLIPDENTMVGILAACASLSDLQYG 341
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
R+VH FI +N+I QD FVKTALIDMY KCGS EEALVTFYK + KDV TWT +IEGLAN
Sbjct: 342 RVVHMFINRNDIKQDIFVKTALIDMYFKCGSPEEALVTFYKMEYKDVFTWTAVIEGLANN 401
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G GN AL +F QME +GI+PNEATFVS L +CRHSGL+ EGCQ+FR+M VY++QP EH
Sbjct: 402 GYGNVALNLFKQMEEQGIQPNEATFVSALTSCRHSGLVKEGCQMFRKMVEVYKLQPRFEH 461
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
F CL+D+LSRAGLL QA EF+K++ E++ +YK +LSACI Y EFD+G+K A M +L
Sbjct: 462 FGCLIDVLSRAGLLAQAYEFVKLLRPEERLAAYKIVLSACIKYLEFDVGEKAALEMAELS 521
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNS 458
QS E ++LLSNFYAL G W VA+ RR MK L TRK+PG S
Sbjct: 522 PQSCEMHILLSNFYALAGQWERVAKTRRTMKRLNTRKEPGIS 563
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 137/317 (43%), Gaps = 69/317 (21%)
Query: 49 VGSWNTLMSIYNDFSDSGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVH 107
+WN L+ Y+ + +++ I G D+ T +L +AC+RL G+ VH
Sbjct: 48 TSTWNCLIRAYSKTHTPIKSILVSNYFIELGSFYPDRYTYPLLLNACSRLSFASMGQLVH 107
Query: 108 CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
+ K+GL+ + ++NALL Y K+++ A LFD+M
Sbjct: 108 THLIKIGLDSDIYVQNALLHFYGSIKQLNYARLLFDKM---------------------- 145
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE-EALELFKKMIDEGVTPDEEVMVSVLSA 226
++DI W + M + + ++LFK++I EGV D+ +V + SA
Sbjct: 146 ----------YERDITSWNTFMGASYASSNSVIDLMDLFKRLISEGVGADKITLVILFSA 195
Query: 227 CSSLS---NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC------------------ 265
+ +L+YG VH ++ + V AL++MY+K
Sbjct: 196 FAQAQCDESLEYGTAVHSCAIKMGLVSMLNVSNALLNMYTKYRQMDAASRVFDEMGSKKD 255
Query: 266 ---------GSLEEALV-----TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
G +E+ L+ FY+ KD+V W M+ G +AL +F +M+
Sbjct: 256 AVSHAILINGYVEKGLIDLASDIFYQIFDKDLVLWNVMLHGYIKAKRPIDALELFKKMDN 315
Query: 312 KGIKPNEATFVSVLAAC 328
+G+ P+E T V +LAAC
Sbjct: 316 EGLIPDENTMVGILAAC 332
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 353 bits (906), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 186/464 (40%), Positives = 292/464 (62%), Gaps = 10/464 (2%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY---ND 61
L VTKT L+ D YV NSLI Y ++AL ++LFD+MP RDV SWN ++S Y
Sbjct: 159 LRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRR 218
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
F D+ V ++ G++ D+ T+V SAC L++L GK +H Y + +++ +
Sbjct: 219 FEDAINVFCRMQEE--SGLMPDEATVVSTLSACTALKRLELGKKIHHY-VRDNVKFTPII 275
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL MY KC + A +F+EM S+ N++ +++GY + ++ ARE+F+ +D
Sbjct: 276 GNALLDMYCKCGCLSIARAVFEEMPSK-NVICWTTMVSGYANCGELEEARELFEGSPIRD 334
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V+W +M++G V+ + +EA+ LF++M V PD+ ++VS+L+ C+ ++ G+ +H
Sbjct: 335 VVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHE 394
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
FI +N I DA V TALI+MY+KCG +E+AL FY KD +WT++I GLA G ++
Sbjct: 395 FIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSK 454
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F +M++ G++P++ TF+ VL+AC H GL+ EG + F M Y+++P +EH+ CLV
Sbjct: 455 ALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLV 514
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFIS---YKALLSACITYSEFDLGKKVANNMMKLGNQ 418
DLL RAGLL +AEE IK +P E+K I+ Y +LLSAC Y ++G++VA ++K +
Sbjct: 515 DLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESS 574
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ LL+N YA W +V + RR MK+L +K PG S I++
Sbjct: 575 DSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEV 618
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 172/375 (45%), Gaps = 79/375 (21%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD--------ARVLFDKMPFRDVGSWNT 54
K +HA + + L DI N L MA TD A +F + + + +N
Sbjct: 54 KQIHAQIFRVGLHQDIVSLNKL------MAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNL 107
Query: 55 LMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG 114
++ + + L+LF +L +G+ D T +F A L ++ + + TK G
Sbjct: 108 IIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTG 167
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF 174
LE+ + N+L+ MYA+ D LFDEM R+++S N++I+GY
Sbjct: 168 LEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPD-RDVISWNVMISGY------------- 213
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNL 233
VK ++ E+A+ +F +M +E G+ PDE +VS LSAC++L L
Sbjct: 214 ------------------VKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRL 255
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
+ G+ +H ++ ++N+ + AL+DMY KCG L A F + K+V+ WTTM+ G
Sbjct: 256 ELGKKIHHYV-RDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGY 314
Query: 294 ANYG-------------------------------LGNEALRVFYQMERKGIKPNEATFV 322
AN G +EA+ +F +M+ + +KP++ V
Sbjct: 315 ANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVV 374
Query: 323 SVLAACRHSGLITEG 337
S+L C +G I +G
Sbjct: 375 SLLTGCAQTGAIEQG 389
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 131/283 (46%), Gaps = 9/283 (3%)
Query: 132 CKEMDEALRLFDEM---GSRRNIVSLNILINGYIDMELVDL--AREVFDEIVDKDIVLWR 186
CK M ++ ++ G ++IVSLN L+ D +L A ++F I ++++
Sbjct: 47 CKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYN 106
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
++ K + L LF K+ ++G+ PD V A L + + + +
Sbjct: 107 LIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKT 166
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ D +V+ +LIDMY++ + + F + +DV++W MI G +A+ VF
Sbjct: 167 GLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVF 226
Query: 307 YQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
+M E G+ P+EAT VS L+AC + G ++ + + P I + L+D+
Sbjct: 227 CRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGN--ALLDMYC 284
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
+ G L A + MP+++ I + ++S E + +++
Sbjct: 285 KCGCLSIARAVFEEMPSKN-VICWTTMVSGYANCGELEEAREL 326
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 181/461 (39%), Positives = 275/461 (59%), Gaps = 1/461 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH HV K L +++V +L+ Y AR +FD P DV +WN ++S YN
Sbjct: 137 GRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNK 196
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E LF + + ++ +TLV++ SAC++L+ L GK VH Y +E L +
Sbjct: 197 VGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVL 256
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENA++ MYA C EMD AL +F M +R +I+S +++G+ ++ +D+AR FD++ +KD
Sbjct: 257 ENAMIDMYADCGEMDSALGIFRSMNNR-DIISWTTIVSGFTNLGEIDVARNYFDKMPEKD 315
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G +++ + +EALELF+ M V PDE MVSVL+AC+ L L+ G +
Sbjct: 316 YVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRT 375
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +N I D FV+ ALIDMY KCG +++A F + +D TWT MI GLA G G +
Sbjct: 376 YIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEK 435
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M + I P+E T++ VL+AC H+GL+ +G + F RM + ++P I H+ CLV
Sbjct: 436 ALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLV 495
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL+RAG L +A E I+ MP + I + ALL+ C Y E D+ + V +++L +
Sbjct: 496 DLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGA 555
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL N YA W ++ E R+ M + +K PG S+I++
Sbjct: 556 VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEM 596
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 118/448 (26%), Positives = 206/448 (45%), Gaps = 77/448 (17%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHF-----YGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+H K L+++ + N ++ F YG F AR LFD++P ++ WNT++ Y
Sbjct: 37 VHCQAIKKGLNANPVLQNRVMTFCCTHEYGD---FQYARRLFDEIPEPNLFIWNTMIRGY 93
Query: 60 N--DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ DF G + L+ +++ G+ D+ T LF R L YG+ +H + K GL+Y
Sbjct: 94 SRLDFPQLG--VSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQY 151
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + AL+ MY C ++D A +FD + + ++++ N++I+ Y
Sbjct: 152 NVFVHTALVQMYLLCGQLDTARGVFD-VCPKADVITWNMIISAY---------------- 194
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
K + EE+ LF M D+ V P +V VLSACS L +L+ G+
Sbjct: 195 ---------------NKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGK 239
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH ++ + + ++ A+IDMY+ CG ++ AL F + +D+++WTT++ G N G
Sbjct: 240 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 299
Query: 298 -------------------------------LGNEALRVFYQMERKGIKPNEATFVSVLA 326
EAL +F M+ +KP+E T VSVL
Sbjct: 300 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 359
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC H G + G + R +++ + L+D+ + G + +AE + M DKF
Sbjct: 360 ACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKF 418
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMK 414
++ A++ + + +NM+K
Sbjct: 419 -TWTAMIVGLAVNGHGEKALDMFSNMLK 445
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 157/351 (44%), Gaps = 12/351 (3%)
Query: 110 ATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNILINGYIDMEL 166
AT L+ + L+ + C+ MD+ ++ + G N V N ++ E
Sbjct: 6 ATSSALKSFSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEY 65
Query: 167 VDL--AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
D AR +FDEI + ++ +W +M+ G + P+ + L+ +M+ GV PD +
Sbjct: 66 GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
+ L+YGR +H +L++ + + FV TAL+ MY CG L+ A F DV+
Sbjct: 126 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 185
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
TW +I G E+ R+F ME K + P T V VL+AC + G ++ +
Sbjct: 186 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV 245
Query: 345 GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDL 404
+V+ + ++D+ + G + A + M D IS+ ++S E D+
Sbjct: 246 KNC-KVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRD-IISWTTIVSGFTNLGEIDV 303
Query: 405 GKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKP 455
+ N K+ + + ++ + + Y + E E RNM+ T KP
Sbjct: 304 AR---NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQ--ATNVKP 349
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 104/225 (46%), Gaps = 14/225 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + ++ + + +D++V N+LI Y + A +F +M RD +W T M +
Sbjct: 369 LGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTW-TAMIVGL 427
Query: 61 DFSDSGE-VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT-KVGLEYM 118
+ GE L +F ++ I+ D+IT + + SAC + G+ T + G+E
Sbjct: 428 AVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPN 487
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ L+ + A+ + EA + + M + N + L+ G D+A V +I+
Sbjct: 488 IAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQIL 547
Query: 179 DKD------IVLWRSMMHGCVKAKQPEEALELFKKMIDEGV--TP 215
+ + VL ++ C K+ + EL + M+D+G+ TP
Sbjct: 548 ELEPDNGAVYVLLCNIYAAC---KRWNDLRELRQMMMDKGIKKTP 589
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 184/465 (39%), Positives = 291/465 (62%), Gaps = 6/465 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ + + KT +D D YV NSLI Y ++ +A+ LFD+M RD SWN ++S Y
Sbjct: 262 GEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVR 321
Query: 62 FSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + F+++ EG D+ T+V SAC L+ L G +H Y K L +
Sbjct: 322 CRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRK-ELGFTTR 380
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++NALL MYAKC ++ A +FDEM S +N++ +I+GYI+ + AR++FD+ +
Sbjct: 381 IDNALLDMYAKCGCLNIARNIFDEM-SMKNVICWTSMISGYINCGDLREARDLFDKSPVR 439
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VLW +M++G V+ ++A+ LF++M + V PD+ +V++L+ C+ L L+ G+ +H
Sbjct: 440 DVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIH 499
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ +N IT D V TALI+MYSKCG ++++L FY+ + KD +WT++I GLA G +
Sbjct: 500 GYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTS 559
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EALR+F +MER G KP++ TF+ VL+AC H GL+ EG + F M V+R++P +EH+ C+
Sbjct: 560 EALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCV 619
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFIS---YKALLSACITYSEFDLGKKVANNMMKLGN 417
+DLL RAGLL +AEE I+ +P E+ I Y ALLSAC ++ D+G+++A + + +
Sbjct: 620 IDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIES 679
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ LL+N YA W + + RR MKEL +K PG S+I++
Sbjct: 680 CDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEV 724
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 171/368 (46%), Gaps = 65/368 (17%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL--FTDARVLFDKMPFRDVGSWNTLMSIYN 60
K + + + + L+ D N L+ F +L A +F+ + + +N ++ +Y
Sbjct: 160 KQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYA 219
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+VL+LF+QL +G+ D T + A L + G+ V + K G++
Sbjct: 220 KRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNY 279
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ MY + ++ A +LFDEM + R+ VS N++I+GY
Sbjct: 280 VYNSLIDMYYELSNVENAKKLFDEM-TTRDSVSWNVMISGY------------------- 319
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLV 239
V+ ++ E+A+ F++M EG PDE +VS LSAC++L NL+ G +
Sbjct: 320 ------------VRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEI 367
Query: 240 HRFILQN---------------------NITQDAFVK---------TALIDMYSKCGSLE 269
H ++ + NI ++ F + T++I Y CG L
Sbjct: 368 HNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLR 427
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
EA F K+ +DVV WT MI G + ++A+ +F +M+ + +KP++ T V++L C
Sbjct: 428 EARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCA 487
Query: 330 HSGLITEG 337
G + +G
Sbjct: 488 QLGALEQG 495
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 106/203 (52%), Gaps = 6/203 (2%)
Query: 132 CKEMDEALRLFDEM---GSRRNIVSLNILINGYIDMELVDL--AREVFDEIVDKDIVLWR 186
CK MD+ ++ ++ G + ++N L+ D L +L A ++F+ + D + ++
Sbjct: 153 CKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYN 212
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
M+ K + L LF+++ ++G+ PD VL A L +++ G V FI++
Sbjct: 213 VMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKT 272
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ D +V +LIDMY + ++E A F + +D V+W MI G +A+ F
Sbjct: 273 GMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTF 332
Query: 307 YQMERKGI-KPNEATFVSVLAAC 328
+M+++G KP+EAT VS L+AC
Sbjct: 333 REMQQEGNEKPDEATVVSTLSAC 355
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 181/461 (39%), Positives = 275/461 (59%), Gaps = 1/461 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH HV K L +++V +L+ Y AR +FD P DV +WN ++S YN
Sbjct: 158 GRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNK 217
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E LF + + ++ +TLV++ SAC++L+ L GK VH Y +E L +
Sbjct: 218 VGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVL 277
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENA++ MYA C EMD AL +F M +R +I+S +++G+ ++ +D+AR FD++ +KD
Sbjct: 278 ENAMIDMYADCGEMDSALGIFRSMNNR-DIISWTTIVSGFTNLGEIDVARNYFDKMPEKD 336
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G +++ + +EALELF+ M V PDE MVSVL+AC+ L L+ G +
Sbjct: 337 YVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRT 396
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +N I D FV+ ALIDMY KCG +++A F + +D TWT MI GLA G G +
Sbjct: 397 YIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEK 456
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M + I P+E T++ VL+AC H+GL+ +G + F RM + ++P I H+ CLV
Sbjct: 457 ALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLV 516
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL+RAG L +A E I+ MP + I + ALL+ C Y E D+ + V +++L +
Sbjct: 517 DLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGA 576
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL N YA W ++ E R+ M + +K PG S+I++
Sbjct: 577 VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEM 617
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 118/448 (26%), Positives = 206/448 (45%), Gaps = 77/448 (17%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHF-----YGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+H K L+++ + N ++ F YG F AR LFD++P ++ WNT++ Y
Sbjct: 58 VHCQAIKKGLNANPVLQNRVMTFCCTHEYGD---FQYARRLFDEIPEPNLFIWNTMIRGY 114
Query: 60 N--DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ DF G + L+ +++ G+ D+ T LF R L YG+ +H + K GL+Y
Sbjct: 115 SRLDFPQLG--VSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQY 172
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + AL+ MY C ++D A +FD + + ++++ N++I+ Y
Sbjct: 173 NVFVHTALVQMYLLCGQLDTARGVFD-VCPKADVITWNMIISAY---------------- 215
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
K + EE+ LF M D+ V P +V VLSACS L +L+ G+
Sbjct: 216 ---------------NKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGK 260
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH ++ + + ++ A+IDMY+ CG ++ AL F + +D+++WTT++ G N G
Sbjct: 261 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 320
Query: 298 -------------------------------LGNEALRVFYQMERKGIKPNEATFVSVLA 326
EAL +F M+ +KP+E T VSVL
Sbjct: 321 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 380
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC H G + G + R +++ + L+D+ + G + +AE + M DKF
Sbjct: 381 ACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKF 439
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMK 414
++ A++ + + +NM+K
Sbjct: 440 -TWTAMIVGLAVNGHGEKALDMFSNMLK 466
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 157/351 (44%), Gaps = 12/351 (3%)
Query: 110 ATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNILINGYIDMEL 166
AT L+ + L+ + C+ MD+ ++ + G N V N ++ E
Sbjct: 27 ATSSALKSFSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEY 86
Query: 167 VDL--AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
D AR +FDEI + ++ +W +M+ G + P+ + L+ +M+ GV PD +
Sbjct: 87 GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
+ L+YGR +H +L++ + + FV TAL+ MY CG L+ A F DV+
Sbjct: 147 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 206
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
TW +I G E+ R+F ME K + P T V VL+AC + G ++ +
Sbjct: 207 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV 266
Query: 345 GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDL 404
+V+ + ++D+ + G + A + M D IS+ ++S E D+
Sbjct: 267 KNC-KVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRD-IISWTTIVSGFTNLGEIDV 324
Query: 405 GKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKP 455
+ N K+ + + ++ + + Y + E E RNM+ T KP
Sbjct: 325 AR---NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQ--ATNVKP 370
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 12/221 (5%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + ++ + + +D++V N+LI Y + A +F +M RD +W T M +
Sbjct: 390 LGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTW-TAMIVGL 448
Query: 61 DFSDSGE-VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT-KVGLEYM 118
+ GE L +F ++ I+ D+IT + + SAC + G+ T + G+E
Sbjct: 449 AVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPN 508
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ L+ + A+ + EA + + M + N + L+ G D+A V +I+
Sbjct: 509 IAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQIL 568
Query: 179 DKD------IVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
+ + VL ++ C K+ + EL + M+D+G+
Sbjct: 569 ELEPDNGAVYVLLCNIYAAC---KRWNDLRELRQMMMDKGI 606
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 183/465 (39%), Positives = 291/465 (62%), Gaps = 6/465 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ + + KT +D D YV NSLI Y ++ +A+ LFD+M RD SWN ++S Y
Sbjct: 216 GEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVR 275
Query: 62 FSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + F+++ EG D+ T+V SAC L+ L G +H Y K L +
Sbjct: 276 CRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRK-ELGFTTR 334
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++NALL MYAKC ++ A +FDEM S +N++ +I+GYI+ + AR++FD+ +
Sbjct: 335 IDNALLDMYAKCGCLNIARNIFDEM-SMKNVICWTSMISGYINCGDLREARDLFDKSPVR 393
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VLW +M++G V+ ++A+ LF++M + + PD+ +V++L+ C+ L L+ G+ +H
Sbjct: 394 DVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIH 453
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ +N IT D V TALI+MYSKCG ++++L FY+ + KD +WT++I GLA G +
Sbjct: 454 GYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTS 513
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EALR+F +MER G KP++ TF+ VL+AC H GL+ EG + F M V+R++P +EH+ C+
Sbjct: 514 EALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCV 573
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFIS---YKALLSACITYSEFDLGKKVANNMMKLGN 417
+DLL RAGLL +AEE I+ +P E+ I Y ALLSAC ++ D+G+++A + + +
Sbjct: 574 IDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIES 633
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ LL+N YA W + + RR MKEL +K PG S+I++
Sbjct: 634 CDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEV 678
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 171/368 (46%), Gaps = 65/368 (17%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL--FTDARVLFDKMPFRDVGSWNTLMSIYN 60
K + + + + L+ D N L+ F +L A +F+ + + +N ++ IY
Sbjct: 114 KQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYA 173
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+VL+LF+QL +G+ D T + A L + G+ V + K G++
Sbjct: 174 KRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNY 233
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ MY + ++ A +LFDEM + R+ VS N++I+GY
Sbjct: 234 VYNSLIDMYYELSNVENAKKLFDEM-TTRDSVSWNVMISGY------------------- 273
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLV 239
V+ ++ E+A+ F++M EG PDE +VS LSAC++L NL+ G +
Sbjct: 274 ------------VRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEI 321
Query: 240 HRFILQN---------------------NITQDAFVK---------TALIDMYSKCGSLE 269
H ++ + NI ++ F + T++I Y CG L
Sbjct: 322 HNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLR 381
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
EA F K+ +DVV WT MI G + ++A+ +F +M+ + IKP++ T V++L C
Sbjct: 382 EARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCA 441
Query: 330 HSGLITEG 337
G + +G
Sbjct: 442 QLGALEQG 449
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 106/203 (52%), Gaps = 6/203 (2%)
Query: 132 CKEMDEALRLFDEM---GSRRNIVSLNILINGYIDMELVDL--AREVFDEIVDKDIVLWR 186
CK MD+ ++ ++ G + ++N L+ D L +L A ++F+ + D + ++
Sbjct: 107 CKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYN 166
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
M+ K + L LF+++ ++G+ PD VL A L +++ G V FI++
Sbjct: 167 VMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKT 226
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ D +V +LIDMY + ++E A F + +D V+W MI G +A+ F
Sbjct: 227 GMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTF 286
Query: 307 YQMERKGI-KPNEATFVSVLAAC 328
+M+++G KP+EAT VS L+AC
Sbjct: 287 REMQQEGNEKPDEATVVSTLSAC 309
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 174/463 (37%), Positives = 276/463 (59%), Gaps = 1/463 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG + HV DSDI+V N++IH AR +FDK RD+ SWN++++ Y
Sbjct: 125 MGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYV 184
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L ++++ EGI D++T++ + S+CA+LE L G+ HCY + GL+ +
Sbjct: 185 RRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVP 244
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MY KC ++ A +LFD M + + +VS ++ GY L+D+A ++FDE+ DK
Sbjct: 245 LANALMDMYMKCGNLESARKLFDSM-TNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDK 303
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ G V A + +EAL LF +M + PDE MVS LSACS L L G +H
Sbjct: 304 DVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIH 363
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I ++ ++ + + TALIDMY+KCG + +A+ F + ++ +TWT +I GLA +G +
Sbjct: 364 HYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAH 423
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ F +M + P+E TF+ +L+AC H GL+ EG + F +M + + P ++H+ C+
Sbjct: 424 GAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCM 483
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +AEE IK MP E + + AL AC + +G++ A+ ++++
Sbjct: 484 VDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDS 543
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVLL+N Y W E +AR+ M++ K PG S I++
Sbjct: 544 GIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVN 586
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 112/430 (26%), Positives = 198/430 (46%), Gaps = 74/430 (17%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD----ARVLFD-KMPFRDVGSWNTLMS 57
K + + + T L D + + LI F ++ + D +LF+ + P + SWN +
Sbjct: 23 KQIQSQMVLTGLIEDGFASSRLIAFCA-ISEWRDLDYCTNILFNTRNP--NTFSWNVAIR 79
Query: 58 IYNDFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
+ D + E ++L+K+++ +G D T +LF ACARL + G + + +G +
Sbjct: 80 GFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFD 139
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + NA++ + C ++D A ++FD+ R++VS N +INGY
Sbjct: 140 SDIFVSNAVIHLLVSCGDLDGARKMFDK-SCVRDLVSWNSMINGY--------------- 183
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
V+ EAL +++M EG+ PDE M+ V+S+C+ L +L G
Sbjct: 184 ----------------VRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLG 227
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
R H +I +N + + AL+DMY KCG+LE A F K +V+WTTM+ G A
Sbjct: 228 RESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQS 287
Query: 297 GL-------------------------------GNEALRVFYQMERKGIKPNEATFVSVL 325
GL G EAL +F +M+ I P+E T VS L
Sbjct: 288 GLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCL 347
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+AC G + G + + + + + L+D+ ++ G + +A + + +P +
Sbjct: 348 SACSQLGALDVGIWIHHYIEK-HELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNS 406
Query: 386 FISYKALLSA 395
+++ A++S
Sbjct: 407 -LTWTAIISG 415
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 105/222 (47%), Gaps = 18/222 (8%)
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV----------- 167
L + N L + KCK + + ++ +M V ++ +G+ L+
Sbjct: 3 LQLINPFLSLLEKCKSISQLKQIQSQM------VLTGLIEDGFASSRLIAFCAISEWRDL 56
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSA 226
D + + + W + G + ++ P EA+ L+K+++ +G PD + A
Sbjct: 57 DYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKA 116
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C+ LS ++ G + +L D FV A+I + CG L+ A F K+ +D+V+W
Sbjct: 117 CARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSW 176
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
+MI G G EAL + +M+ +GIKP+E T + V+++C
Sbjct: 177 NSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSC 218
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 175/461 (37%), Positives = 277/461 (60%), Gaps = 1/461 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH H+ K S+++V N+LIH Y + AR +FD+ DV +WN ++S YN
Sbjct: 138 GRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNR 197
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + LF ++ ++ ITLV + SAC++L+ L+ GK VH Y + +E + +
Sbjct: 198 SKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVL 257
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENAL+ MYA C +MD AL +FD M SR +++S ++ G+ ++ V LAR FD++ ++D
Sbjct: 258 ENALIDMYAACGDMDTALGIFDNMKSR-DVISWTAIVTGFTNLGQVGLARNYFDKMPERD 316
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G ++ + +E L LF++M + PDE MVS+L+AC+ L L+ G +
Sbjct: 317 FVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKA 376
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +N I D+FV ALIDMY CG++E+A+ F +D ++WT +I GLA G G E
Sbjct: 377 YIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEE 436
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F QM + I P+E T + VL AC HSG++ +G + F RM + ++P + H+ C+V
Sbjct: 437 ALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMV 496
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +A E IK MP + I + +LL AC + + ++ + A +++L ++
Sbjct: 497 DLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGA 556
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL N YA W ++ E R+ M + +K PG S+I++
Sbjct: 557 VYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEM 597
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 114/426 (26%), Positives = 195/426 (45%), Gaps = 71/426 (16%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL--FTDARVLFDKMPFRDVGSWNTLMSIYN 60
K +H+ T L S+ V +I F + L AR++FD MP + WN ++ Y+
Sbjct: 36 KQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYS 95
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ ++ +++ G++ D+ T L R + G+ +H + K+G +
Sbjct: 96 RVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVF 155
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++NAL+ +Y+ E+ A +FD S+ ++V+ N++I+GY
Sbjct: 156 VQNALIHLYSLSGEVSVARGVFDR-SSKGDVVTWNVMISGY------------------- 195
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++KQ +E+++LF +M V P +VSVLSACS L +L G+ VH
Sbjct: 196 ------------NRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVH 243
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG-LG 299
R++ I ++ ALIDMY+ CG ++ AL F +DV++WT ++ G N G +G
Sbjct: 244 RYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVG 303
Query: 300 ------------------------------NEALRVFYQMERKGIKPNEATFVSVLAACR 329
E L +F +M+ IKP+E T VS+L AC
Sbjct: 304 LARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACA 363
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
H G + G + + + + I+ FV L+D+ G + +A MP DK I
Sbjct: 364 HLGALELGEWI---KAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDK-I 419
Query: 388 SYKALL 393
S+ A++
Sbjct: 420 SWTAVI 425
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 125/250 (50%), Gaps = 5/250 (2%)
Query: 163 DMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS 222
DME AR VFD + + +W +M+ G + P A+ ++ +M++ GV PDE
Sbjct: 68 DMEY---ARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPF 124
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
+L + + ++ GR +H I++ + + FV+ ALI +YS G + A F ++ D
Sbjct: 125 LLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGD 184
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
VVTW MI G +E++++F +MER + P+ T VSVL+AC + G ++ R
Sbjct: 185 VVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHR 244
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
+ + +++P L+D+ + G + A M + D IS+ A+++ +
Sbjct: 245 YVKDL-KIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRD-VISWTAIVTGFTNLGQV 302
Query: 403 DLGKKVANNM 412
L + + M
Sbjct: 303 GLARNYFDKM 312
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 98/221 (44%), Gaps = 6/221 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + A++ K + D +VGN+LI Y A +F+ MP RD SW ++
Sbjct: 370 LGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLA 429
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHC-YATKVGLEYML 119
E L +F Q++ I D++T + + AC + GK T+ G+E +
Sbjct: 430 INGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNV 489
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAREVFDE 176
++ + + + EA + M + N + L+ + D E+ ++A + E
Sbjct: 490 AHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILE 549
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV--TP 215
+ ++ ++ + + + E+ E+ K M+D G+ TP
Sbjct: 550 LEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTP 590
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/462 (37%), Positives = 274/462 (59%), Gaps = 2/462 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK H V K L SD+++ NSLIHFY + +F +P RDV SWN++++ +
Sbjct: 155 GKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQ 214
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF+++ + + + IT+V + SACA+ +G+ VH Y + + L +
Sbjct: 215 GGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTL 274
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NA+L MY KC +++A RLFD+M ++IVS ++ GY + D A+ +FD + ++D
Sbjct: 275 SNAMLDMYTKCGSVEDAKRLFDKM-PEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQD 333
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
I W +++ + +P+EALELF ++ + + PDE +VS LSAC+ L + G +H
Sbjct: 334 IAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIH 393
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I + + + + T+LIDMY KCG L++AL+ F+ + KDV W+ MI GLA +G G
Sbjct: 394 VYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGK 453
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+A+ +F +M+ +KPN TF ++L AC H GL+ EG F +M VY V P ++H+ C+
Sbjct: 454 DAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACM 513
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L RAGLL +A E I+ MP + ALL AC + L ++ + +++L +H
Sbjct: 514 VDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNH 573
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
AYVLLSN YA G W V+ R+ M+++ +K+PG S I++
Sbjct: 574 GAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEV 615
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 116/371 (31%), Positives = 181/371 (48%), Gaps = 69/371 (18%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIY 59
K +HA + +T L D + + LI ++ F A+ +FD++P ++ +WNTL+ Y
Sbjct: 52 KQIHAQMLRTGLFFDPFSASRLI-TAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAY 110
Query: 60 NDFSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
S+ + L++F +++ + DK T L A + LE+L GK H KV L
Sbjct: 111 ASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSD 170
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + N+L+ YAKC E+ R+F + RR++VS N +I ++
Sbjct: 171 VFILNSLIHFYAKCGELGLGYRVFVNI-PRRDVVSWNSMITAFVQ--------------- 214
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
GC PEEALELF++M + V P+ MV VLSAC+ S+ ++GR
Sbjct: 215 -----------GGC-----PEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRW 258
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY-- 296
VH +I +N I + + A++DMY+KCGS+E+A F K KD+V+WTTM+ G A
Sbjct: 259 VHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGE 318
Query: 297 -----------------------------GLGNEALRVFYQME-RKGIKPNEATFVSVLA 326
G EAL +F++++ K KP+E T VS L+
Sbjct: 319 YDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLS 378
Query: 327 ACRHSGLITEG 337
AC G + G
Sbjct: 379 ACAQLGAMDLG 389
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 134/293 (45%), Gaps = 14/293 (4%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT-PDEEVMVSVLS 225
+D A++VFD+I ++ W +++ + P ++L +F +M+ + PD+ ++
Sbjct: 85 LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
A S L L G+ H +++ + D F+ +LI Y+KCG L F +DVV+
Sbjct: 145 AASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVS 204
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
W +MI G EAL +F +ME + +KPN T V VL+AC F R
Sbjct: 205 WNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFE-----FGRWV 259
Query: 346 GVY----RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
Y R+ ++ ++D+ ++ G + A+ MP +D +S+ +L E
Sbjct: 260 HSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKD-IVSWTTMLVGYAKIGE 318
Query: 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK 454
+D + + + M NQ A+ L + Y G E E ++ +T K
Sbjct: 319 YDAAQGIFDAM---PNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKP 368
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 48/260 (18%), Positives = 105/260 (40%), Gaps = 33/260 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H ++ K + + ++ SLI Y + A ++F + +DV W+ +++
Sbjct: 388 LGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLA 447
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH-----CYATKVGL 115
+ + LF ++ + + + +T + AC+ + + G+T Y G+
Sbjct: 448 MHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGV 507
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
++ M + L + ++EA+ L ++M L+ E V LA +
Sbjct: 508 KHYACMVDIL----GRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACS 563
Query: 176 EIVDKDIVLWRSMMHGC--------VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227
++++ + HG KA + + L K M D G+ + C
Sbjct: 564 QLIELE-----PGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKE--------PGC 610
Query: 228 SSLSNLQYGRLVHRFILQNN 247
SS ++ +VH F++ +N
Sbjct: 611 SS---IEVDGIVHEFLVGDN 627
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 173/462 (37%), Positives = 274/462 (59%), Gaps = 2/462 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V K + SD+++ NSLIHFY + A ++F K+ +D+ SWN+++S +
Sbjct: 150 GQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQ 209
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LFK++ E +++T+V + SACA+ L +G+ Y + G++ L +
Sbjct: 210 GGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLIL 269
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NA+L MY KC +++A RLFD+M ++IVS +I+GY + D AR VFD + +D
Sbjct: 270 SNAMLDMYVKCGSLEDARRLFDKM-EEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPRED 328
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
I W +++ + +P+EAL +F+++ +++ P+E + S L+AC+ L + G +H
Sbjct: 329 ITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIH 388
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I + I + + T+LIDMYSKCG LE+AL FY + +DV W+ MI GLA +G G
Sbjct: 389 VYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGR 448
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ +F +M+ +KPN TF ++L AC HSGL+ EG F +M VY V P +H+ C+
Sbjct: 449 AAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACM 508
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L RAG L +A E I+ MP + ALL AC Y +L + + +++ + +H
Sbjct: 509 VDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNH 568
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
AYVLLSN YA G W V+ R++MK K+PG S I++
Sbjct: 569 GAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEV 610
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 189/426 (44%), Gaps = 80/426 (18%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARV-----LFDKMPFRDVGSWNTLMS 57
K LHAH+ +T L + S + AL + + + +FD++P ++ +WNTL+
Sbjct: 47 KQLHAHMLRTGL---FFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIR 103
Query: 58 IYNDFSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
+ + L++F Q++ E + T + A + L G+ +H K
Sbjct: 104 AFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFG 163
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
L + N+L+ Y+ ++D A +F ++ ++IVS N +I+G+
Sbjct: 164 SDLFISNSLIHFYSSLGDLDSAYLVFSKI-VEKDIVSWNSMISGF--------------- 207
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
V+ PEEAL+LFK+M E P+ MV VLSAC+ +L++G
Sbjct: 208 ----------------VQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFG 251
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
R +I +N I + + A++DMY KCGSLE+A F K + KD+V+WTTMI+G A
Sbjct: 252 RWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKV 311
Query: 297 GLGNEALRVFYQMER--------------------------------KGIKPNEATFVSV 324
G + A RVF M R K KPNE T S
Sbjct: 312 GDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLAST 371
Query: 325 LAACRHSGLITEGCQL---FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
LAAC G + G + ++ G ++ L+D+ S+ G L +A E +
Sbjct: 372 LAACAQLGAMDLGGWIHVYIKKQG----IKLNFHITTSLIDMYSKCGHLEKALEVFYSVE 427
Query: 382 AEDKFI 387
D F+
Sbjct: 428 RRDVFV 433
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 139/295 (47%), Gaps = 17/295 (5%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT-PDEEVMVSVLS 225
+D A +VFD+I ++ W +++ + +P + L +F +M+ E P+ V+
Sbjct: 80 LDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIK 139
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
A + +S+L G+ +H +++ + D F+ +LI YS G L+ A + F K KD+V+
Sbjct: 140 AATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVS 199
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG---CQLFR 342
W +MI G G EAL++F +M+ + +PN T V VL+AC + G C
Sbjct: 200 WNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIE 259
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
R G + + ++D+ + G L A M +D +S+ ++ ++
Sbjct: 260 RNG----IDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKD-IVSWTTMIDGYAKVGDY 314
Query: 403 DLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRK--KP 455
D ++V + M + + A+ L + Y G + EA +ELQ K KP
Sbjct: 315 DAARRVFDVMPR---EDITAWNALISSYQQNG---KPKEALAIFRELQLNKNTKP 363
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 175/461 (37%), Positives = 267/461 (57%), Gaps = 5/461 (1%)
Query: 6 HAHVTKTALDSDIYVGNSLI---HFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
HAH+ K+ L + + LI A +F ++P + WNT++ Y +
Sbjct: 27 HAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANS 86
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
L +F Q++ ++ DK T +C + G+ +H + K GL L ++
Sbjct: 87 PTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQ 146
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLA-REVFDEIVDKD 181
N L+ +YA C +++A L D M R++VS N L++ Y + L++LA R VF E K+
Sbjct: 147 NTLIHLYASCGCIEDARHLLDRM-LERDVVSWNALLSAYAERGLMELASRRVFGETPVKN 205
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ G A + E L LF+ M GV PD +VSVLSAC+ + L G VH
Sbjct: 206 VVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHA 265
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +N I+ D FV TAL+DMYSKCGS+E+AL F KD+ TW ++I GL+ +G G
Sbjct: 266 YIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQH 325
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL++F +M +G KPNE TFV VL+AC +GL+ EG ++F M V+ +QPTIEH+ C+V
Sbjct: 326 ALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMV 385
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R GLL +AEE ++ MP ++ + +++LL AC + +L ++VA +++L Q
Sbjct: 386 DLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESS 445
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++V LSN YA G W +V E R+ M+ RK PG S+I++
Sbjct: 446 SFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEV 486
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 157/357 (43%), Gaps = 76/357 (21%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H HV KT L D+++ N+LIH Y DAR L D+M RDV SWN L+S Y +
Sbjct: 127 GRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAE 186
Query: 62 -----------------------------FSDSG---EVLILFKQLIFEGIVADKITLVI 89
+S +G EVL+LF+ + G+ D TLV
Sbjct: 187 RGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVS 246
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA + L G+ VH Y K G+ + AL+ MY+KC +++AL +
Sbjct: 247 VLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEV-------- 298
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
F+ + KDI W S++ G + AL++F +M+
Sbjct: 299 ------------------------FNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEML 334
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQNNITQDAFVKTALIDMYSK 264
EG P+E V VLSACS L GR +VH +Q I ++D+ +
Sbjct: 335 VEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYG----CMVDLLGR 390
Query: 265 CGSLEEALVTFYKTDCKDV-VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
G LEEA K K+ V W +++ N+G A RV ++ + P E++
Sbjct: 391 VGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLE--LSPQESS 445
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 333 bits (855), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 176/463 (38%), Positives = 269/463 (58%), Gaps = 3/463 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G AHV + LDSD++V N+ HF DAR LFD+ P RD+ SWNTL+ Y
Sbjct: 144 GDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVR 203
Query: 62 FSDSGEVLILFKQLIFEGIV--ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ E L LF +++ E V D++T++ S C ++ L G+ +H + G+ +
Sbjct: 204 RGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTV 263
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NAL+ MY KC ++ A +F+ + R +VS +I G+ L+D AR+VFDE+ +
Sbjct: 264 RLMNALMDMYIKCGSLEMAKSVFERI-EHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPE 322
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D+ W ++M G V+ KQ +EAL LF +M + V PDE MV++L+ACS L L+ G V
Sbjct: 323 RDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWV 382
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
HR+I ++ + + T+LIDMY+KCG++E+A+ F + K+ +TWT MI GLAN+G
Sbjct: 383 HRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHA 442
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
NEA+ F M G KP+E TF+ VL+AC H+GL+ EG + F M Y ++ ++H+ C
Sbjct: 443 NEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSC 502
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
++DLL RAG L +AE+ + MP E + + A+ AC LG+K A ++++
Sbjct: 503 MIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSD 562
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL+N YA + + R M+ L K PG S I+L
Sbjct: 563 SGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIEL 605
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/424 (26%), Positives = 188/424 (44%), Gaps = 73/424 (17%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGE-----VLILFKQLIFEGIV-ADKITLVIL 90
A L +P + +S+ +D G L L++ L+ G D +T L
Sbjct: 72 ALALLSSLPASAYNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDHLTFPFL 131
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
ACARL + YG + ++GL+ + + NA + M++A RLFD R+
Sbjct: 132 LKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDR-SPVRD 190
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI- 209
+VS N LI GY V+ P EALELF +M+
Sbjct: 191 LVSWNTLIGGY-------------------------------VRRGNPAEALELFWRMVA 219
Query: 210 -DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
D V PDE M++ +S C + +L+ GR +H F+ + ++ + AL+DMY KCGSL
Sbjct: 220 EDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSL 279
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGN---------------------------- 300
E A F + + + VV+WTTMI G A +GL +
Sbjct: 280 EMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCK 339
Query: 301 ---EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F++M+ + P+E T V++L AC G + G + R + +R+ ++
Sbjct: 340 QCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEK-HRLVFSVALG 398
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
L+D+ ++ G + +A K +P E +++ A++ + + + M++LG
Sbjct: 399 TSLIDMYAKCGNIEKAIHIFKEIP-EKNALTWTAMICGLANHGHANEAIEHFRTMIELGQ 457
Query: 418 QSHE 421
+ E
Sbjct: 458 KPDE 461
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG +H ++ K L + +G SLI Y + A +F ++P ++ +W ++
Sbjct: 378 MGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLA 437
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCY-ATKVGLEYML 119
+ + E + F+ +I G D+IT + + SAC + G+ TK LE +
Sbjct: 438 NHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKM 497
Query: 120 NMENALLLMYAKCKEMDEALRLFDEM 145
+ ++ + + +DEA +L + M
Sbjct: 498 KHYSCMIDLLGRAGHLDEAEQLVNTM 523
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 176/490 (35%), Positives = 268/490 (54%), Gaps = 33/490 (6%)
Query: 6 HAHVTKTALDSDIYVGNSLI---HFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
HAH+ K+ L + + LI A +F ++P + WNT++ Y +
Sbjct: 27 HAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANS 86
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
L +F Q++ ++ DK T +C + G+ +H + K GL L ++
Sbjct: 87 PTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQ 146
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSR------------------------------RNIV 152
N L+ +YA C +++A L D M R RN+
Sbjct: 147 NTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVE 206
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
S N +I+GY+ + L++ AR VF E K++V W +M+ G A + E L LF+ M G
Sbjct: 207 SWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAG 266
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
V PD +VSVLSAC+ + L G VH +I +N I+ D FV TAL+DMYSKCGS+E+AL
Sbjct: 267 VKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKAL 326
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F KD+ TW ++I GL+ +G G AL++F +M +G KPNE TFV VL+AC +G
Sbjct: 327 EVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAG 386
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392
L+ EG ++F M V+ +QPTIEH+ C+VDLL R GLL +AEE ++ MP ++ + +++L
Sbjct: 387 LLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESL 446
Query: 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
L AC + +L ++VA +++L Q ++V LSN YA G W +V E R+ M+ R
Sbjct: 447 LGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVR 506
Query: 453 KKPGNSIIDL 462
K PG S+I++
Sbjct: 507 KDPGCSMIEV 516
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 146/322 (45%), Gaps = 44/322 (13%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
L H+ + ++ N +I Y + L +AR +F + P ++V SWN +++ Y+
Sbjct: 192 LACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGR 251
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
EVL+LF+ + G+ D TLV + SACA + L G+ VH Y K G+ + A
Sbjct: 252 FSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATA 311
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MY+KC +++AL + F+ + KDI
Sbjct: 312 LVDMYSKCGSIEKALEV--------------------------------FNSCLRKDIST 339
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-----LV 239
W S++ G + AL++F +M+ EG P+E V VLSACS L GR +V
Sbjct: 340 WNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMV 399
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV-VTWTTMIEGLANYGL 298
H +Q I ++D+ + G LEEA K K+ V W +++ N+G
Sbjct: 400 HVHGIQPTIEHYG----CMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGN 455
Query: 299 GNEALRVFYQMERKGIKPNEAT 320
A RV ++ + P E++
Sbjct: 456 VELAERVAQKLLE--LSPQESS 475
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 85/179 (47%), Gaps = 1/179 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA++ K + D +V +L+ Y + A +F+ +D+ +WN+++S +
Sbjct: 290 GEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLST 349
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYMLN 120
L +F +++ EG +++T V + SAC+R L G+ + V G++ +
Sbjct: 350 HGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIE 409
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ + + ++EA L +M + V L+ + V+LA V ++++
Sbjct: 410 HYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLE 468
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 171/464 (36%), Positives = 277/464 (59%), Gaps = 1/464 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH HV K L S++YV N+L+ Y L AR +FD+ DV SWN ++S YN
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNR 213
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + L ++ + +TL+++ SAC++++ K VH Y ++ E L +
Sbjct: 214 MKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRL 273
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENAL+ YA C EMD A+R+F M +R +++S ++ GY++ + LAR FD++ +D
Sbjct: 274 ENALVNAYAACGEMDIAVRIFRSMKAR-DVISWTSIVKGYVERGNLKLARTYFDQMPVRD 332
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W M+ G ++A E+LE+F++M G+ PDE MVSVL+AC+ L +L+ G +
Sbjct: 333 RISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKT 392
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +N I D V ALIDMY KCG E+A F+ D +D TWT M+ GLAN G G E
Sbjct: 393 YIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQE 452
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A++VF+QM+ I+P++ T++ VL+AC HSG++ + + F +M +R++P++ H+ C+V
Sbjct: 453 AIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMV 512
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L RAGL+ +A E ++ MP I + ALL A +++ + + A +++L +
Sbjct: 513 DMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGA 572
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
Y LL N YA W ++ E RR + ++ +K PG S+I++ +
Sbjct: 573 VYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGF 616
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 106/418 (25%), Positives = 183/418 (43%), Gaps = 67/418 (16%)
Query: 3 KGLHAH-VTKTALDSDIYVGNSLIHFYGRMALFTD-ARVLFDKMPFRDVGSWNTLMSIYN 60
K LH+ +T+ + + + + R+ A LF K+P DV WN ++ ++
Sbjct: 51 KQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWS 110
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR-LEKLHYGKTVHCYATKVGLEYML 119
GE + L+ ++ EG+ D T L + R L GK +HC+ K GL L
Sbjct: 111 KVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNL 170
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++NAL+ MY+ C MD A +FD + ++ S N++I+GY M
Sbjct: 171 YVQNALVKMYSLCGLMDMARGVFDRR-CKEDVFSWNLMISGYNRM--------------- 214
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K+ EE++EL +M V+P ++ VLSACS + + + V
Sbjct: 215 ----------------KEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRV 258
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT----------- 288
H ++ + ++ AL++ Y+ CG ++ A+ F +DV++WT+
Sbjct: 259 HEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNL 318
Query: 289 --------------------MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
MI+G G NE+L +F +M+ G+ P+E T VSVL AC
Sbjct: 319 KLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTAC 378
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
H G + G + + +++ + L+D+ + G +A++ M DKF
Sbjct: 379 AHLGSLEIG-EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKF 435
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 128/282 (45%), Gaps = 6/282 (2%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
V A ++F +I + D+V+W +M+ G K E + L+ M+ EGVTPD +L+
Sbjct: 84 VSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNG 143
Query: 227 CSSLSN-LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
L G+ +H +++ + + +V+ AL+ MYS CG ++ A F + +DV +
Sbjct: 144 LKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFS 203
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
W MI G E++ + +MER + P T + VL+AC + C+
Sbjct: 204 WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVK-DKDLCKRVHEYV 262
Query: 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
+ +P++ LV+ + G + A + M A D IS+ +++ + L
Sbjct: 263 SECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARD-VISWTSIVKGYVERGNLKLA 321
Query: 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
+ + M + ++ ++ + Y G + E E R M+
Sbjct: 322 RTYFDQM---PVRDRISWTIMIDGYLRAGCFNESLEIFREMQ 360
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 202 LELFKKM----IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
L +FK + I E ++ D +S+L C + Q+ +L + I + F K
Sbjct: 15 LSIFKALLMSTITESISNDYSRFISILGVCKTTD--QFKQLHSQSITRGVAPNPTFQKKL 72
Query: 258 LIDMYSKCGS-LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
+ S+ G + A F K DVV W MI+G + E +R++ M ++G+ P
Sbjct: 73 FVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTP 132
Query: 317 NEATFVSVLAACRHSG 332
+ TF +L + G
Sbjct: 133 DSHTFPFLLNGLKRDG 148
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + ++ K + +D+ VGN+LI Y + A+ +F M RD +W ++
Sbjct: 386 IGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLA 445
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSAC 94
+ E + +F Q+ I D IT + + SAC
Sbjct: 446 NNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSAC 479
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 180/466 (38%), Positives = 281/466 (60%), Gaps = 8/466 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA V KT L+ D YV NS + Y + L +F++MP RD SWN ++S Y
Sbjct: 127 GEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVR 186
Query: 62 FSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCY-ATKVGLEYML 119
E + +++++ E ++ T+V SACA L L GK +H Y A+++ L +
Sbjct: 187 CKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTI- 245
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
M NALL MY KC + A +FD M + +N+ ++ GY+ +D AR +F+
Sbjct: 246 -MGNALLDMYCKCGHVSVAREIFDAM-TVKNVNCWTSMVTGYVICGQLDQARNLFERSPS 303
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+DIVLW +M++G V+ + EE + LF +M GV PD+ ++V++L+ C+ L+ G+ +
Sbjct: 304 RDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWI 363
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I +N I DA V TALI+MY+KCG +E++ F KD +WT++I GLA G
Sbjct: 364 HNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKP 423
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+EAL +F M+ G+KP++ TFV+VL+AC H+GL+ EG +LF M +Y ++P +EH+ C
Sbjct: 424 SEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGC 483
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFIS---YKALLSACITYSEFDLGKKVANNMMKLG 416
+DLL RAGLL +AEE +K +PA++ I Y ALLSAC TY D+G+++A + K+
Sbjct: 484 FIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVK 543
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ + LL++ YA W +V + R MK+L +K PG S I++
Sbjct: 544 SSDSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAIEV 589
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/369 (25%), Positives = 165/369 (44%), Gaps = 67/369 (18%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL--FTDARVLFDKMPFRDVGSWNTLMSIYN 60
K + AH+ L D N L+ F +L F A +F+ + + +N ++ +
Sbjct: 25 KQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIHDPSLFIYNLMIKAFV 84
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ LF+QL G+ D T + + ++ G+ VH + K GLE+
Sbjct: 85 KSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLEFDPY 144
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+ + MYA+ ++ ++F+EM R+ VS NI+I+GY
Sbjct: 145 VCNSFMDMYAELGLVEGFTQVFEEM-PDRDAVSWNIMISGY------------------- 184
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLV 239
V+ K+ EEA++++++M E P+E +VS LSAC+ L NL+ G+ +
Sbjct: 185 ------------VRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEI 232
Query: 240 HRFILQNNITQDAFVKTALIDMYSK-------------------------------CGSL 268
H +I + + + AL+DMY K CG L
Sbjct: 233 HDYI-ASELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQL 291
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
++A F ++ +D+V WT MI G + E + +F +M+ +G+KP++ V++L C
Sbjct: 292 DQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGC 351
Query: 329 RHSGLITEG 337
SG + +G
Sbjct: 352 AQSGALEQG 360
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 6/214 (2%)
Query: 121 MENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNILINGYIDMELVDL--AREVFD 175
M+ + + CK M + ++ + G +++ +LN L+ +D L D A +F+
Sbjct: 7 MKGTYISLLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFN 66
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
I D + ++ M+ VK+ A+ LF+++ + GV PD VL + ++
Sbjct: 67 YIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVRE 126
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G VH F+++ + D +V + +DMY++ G +E F + +D V+W MI G
Sbjct: 127 GEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVR 186
Query: 296 YGLGNEALRVFYQM-ERKGIKPNEATFVSVLAAC 328
EA+ V+ +M KPNEAT VS L+AC
Sbjct: 187 CKRFEEAVDVYRRMWTESNEKPNEATVVSTLSAC 220
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 171/464 (36%), Positives = 277/464 (59%), Gaps = 1/464 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH HV K L S++YV N+L+ Y L AR +FD+ DV SWN ++S YN
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNR 213
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + L ++ + +TL+++ SAC++++ K VH Y ++ E L +
Sbjct: 214 MKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRL 273
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENAL+ YA C EMD A+R+F M +R +++S ++ GY++ + LAR FD++ +D
Sbjct: 274 ENALVNAYAACGEMDIAVRIFRSMKAR-DVISWTSIVKGYVERGNLKLARTYFDQMPVRD 332
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W M+ G ++A E+LE+F++M G+ PDE MVSVL+AC+ L +L+ G +
Sbjct: 333 RISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKT 392
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +N I D V ALIDMY KCG E+A F+ D +D TWT M+ GLAN G G E
Sbjct: 393 YIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQE 452
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A++VF+QM+ I+P++ T++ VL+AC HSG++ + + F +M +R++P++ H+ C+V
Sbjct: 453 AIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMV 512
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L RAGL+ +A E ++ MP I + ALL A +++ + + A +++L +
Sbjct: 513 DMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGA 572
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
Y LL N YA W ++ E RR + ++ +K PG S+I++ +
Sbjct: 573 VYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGF 616
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 169/379 (44%), Gaps = 65/379 (17%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR-LE 98
LF K+P DV WN ++ ++ GE + L+ ++ EG+ D T L + R
Sbjct: 90 LFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGG 149
Query: 99 KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
L GK +HC+ K GL L ++NAL+ MY+ C MD A +FD + ++ S N++I
Sbjct: 150 ALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRR-CKEDVFSWNLMI 208
Query: 159 NGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE 218
+GY M K+ EE++EL +M V+P
Sbjct: 209 SGYNRM-------------------------------KEYEESIELLVEMERNLVSPTSV 237
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
++ VLSACS + + + VH ++ + ++ AL++ Y+ CG ++ A+ F
Sbjct: 238 TLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSM 297
Query: 279 DCKDVVTWTT-------------------------------MIEGLANYGLGNEALRVFY 307
+DV++WT+ MI+G G NE+L +F
Sbjct: 298 KARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFR 357
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367
+M+ G+ P+E T VSVL AC H G + G + + +++ + L+D+ +
Sbjct: 358 EMQSAGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVVGNALIDMYFKC 416
Query: 368 GLLYQAEEFIKIMPAEDKF 386
G +A++ M DKF
Sbjct: 417 GCSEKAQKVFHDMDQRDKF 435
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 128/282 (45%), Gaps = 6/282 (2%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
V A ++F +I + D+V+W +M+ G K E + L+ M+ EGVTPD +L+
Sbjct: 84 VSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNG 143
Query: 227 CSSLSN-LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
L G+ +H +++ + + +V+ AL+ MYS CG ++ A F + +DV +
Sbjct: 144 LKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFS 203
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
W MI G E++ + +MER + P T + VL+AC + C+
Sbjct: 204 WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVK-DKDLCKRVHEYV 262
Query: 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
+ +P++ LV+ + G + A + M A D IS+ +++ + L
Sbjct: 263 SECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARD-VISWTSIVKGYVERGNLKLA 321
Query: 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
+ + M + ++ ++ + Y G + E E R M+
Sbjct: 322 RTYFDQMPV---RDRISWTIMIDGYLRAGCFNESLEIFREMQ 360
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Query: 196 KQP-EEALELFKKM----IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
K P L +FK + I E ++ D +S+L C + Q+ +L + I +
Sbjct: 8 KSPFNSELSIFKALLMSTITESISNDYSRFISILGVCKTTD--QFKQLHSQSITRGVAPN 65
Query: 251 DAFVKTALIDMYSKCGS-LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
F K + S+ G + A F K DVV W MI+G + E +R++ M
Sbjct: 66 PTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNM 125
Query: 310 ERKGIKPNEATFVSVLAACRHSG 332
++G+ P+ TF +L + G
Sbjct: 126 LKEGVTPDSHTFPFLLNGLKRDG 148
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + ++ K + +D+ VGN+LI Y + A+ +F M RD +W ++
Sbjct: 386 IGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLA 445
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSAC 94
+ E + +F Q+ I D IT + + SAC
Sbjct: 446 NNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSAC 479
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 171/462 (37%), Positives = 274/462 (59%), Gaps = 2/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H K + D+Y+ NSL+ FYG + A LF + +DV SWN+++S +
Sbjct: 144 VGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFA 203
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + L LF ++ E ++ + +T+V + SACA+ L +G+ V Y + G++ L
Sbjct: 204 QGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLT 263
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NA+L MY KC +D+A +LFDEM R++ S I+++GY M D AR VF+ + K
Sbjct: 264 LCNAMLDMYTKCGSVDDAQKLFDEM-PERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVK 322
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+I W ++ + +P+EAL +F ++ + + PDE +VS LSAC+ L + G +
Sbjct: 323 EIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWI 382
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I + I + + ++L+DMY+KCGSLE+AL FY + +DV W+ MI GL +G G
Sbjct: 383 HVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRG 442
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
A+ +F++M+ +KPN TF +VL AC H+GL+ EG F M VY V P ++H+ C
Sbjct: 443 KAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYAC 502
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VD+L RAG L +A E I M + ALL AC + +LG+ ++ ++KL ++
Sbjct: 503 MVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRN 562
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
H A VLLSN YA G W +V+E R+ M++ + +K+PG S I+
Sbjct: 563 HGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIE 604
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 119/424 (28%), Positives = 188/424 (44%), Gaps = 76/424 (17%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFT--DARVLFDKMPFRDVGSWNTLMSIYN 60
K +HA + +T L D + + L + T AR LFD++P ++ +WNTL+ Y
Sbjct: 42 KEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYA 101
Query: 61 DFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
SD + ++F L+ + + +K T + A + L+ G VH A K+ L
Sbjct: 102 SSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDL 161
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ N+L+ Y C ++ A RLF + +
Sbjct: 162 YILNSLVRFYGACGDLSMAERLFKGISCK------------------------------- 190
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W SM+ + PE+ALELF KM E V P+ MV VLSAC+ +L++GR V
Sbjct: 191 -DVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWV 249
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY--- 296
+I + I D + A++DMY+KCGS+++A F + +DV +WT M++G A
Sbjct: 250 CSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDY 309
Query: 297 ----------------------------GLGNEALRVFYQMERKGI-KPNEATFVSVLAA 327
G EAL +F +++ I KP+E T VS L+A
Sbjct: 310 DAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSA 369
Query: 328 CRHSGLITEGCQL---FRRMGGVYRVQPTIEHFV-CLVDLLSRAGLLYQAEEFIKIMPAE 383
C G I G + +R G V H + LVD+ ++ G L +A E +
Sbjct: 370 CAQLGAIDLGGWIHVYIKREGIVLNC-----HLISSLVDMYAKCGSLEKALEVFYSVEER 424
Query: 384 DKFI 387
D ++
Sbjct: 425 DVYV 428
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 119/250 (47%), Gaps = 9/250 (3%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT-PDEEVMVSVLS 225
+D AR +FD+I ++ W +++ + P ++ +F ++D+ P++ V+
Sbjct: 75 LDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIK 134
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
A S L + G VH ++ + D ++ +L+ Y CG L A F CKDVV+
Sbjct: 135 AASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVS 194
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG---CQLFR 342
W +MI A +AL +F +MER+ + PN T V VL+AC + G C
Sbjct: 195 WNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIE 254
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
R G +V T+ + ++D+ ++ G + A++ MP D F S+ +L ++
Sbjct: 255 RKG--IKVDLTLCN--AMLDMYTKCGSVDDAQKLFDEMPERDVF-SWTIMLDGYAKMGDY 309
Query: 403 DLGKKVANNM 412
D + V N M
Sbjct: 310 DAARLVFNAM 319
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 174/466 (37%), Positives = 277/466 (59%), Gaps = 5/466 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H+H+ K +SD++V N+LIH Y AR LFD+ RD+ S+NT++ Y +
Sbjct: 130 GHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAE 189
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHC--YATKVGLEYML 119
+ L LF ++ GI+ D+ T V LFS C+ L + + GK +H Y ++ +
Sbjct: 190 VNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNI 249
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+++A++ MYAKC ++ A R+F MG+ ++ + + ++ GY +++AR++F+ + +
Sbjct: 250 LLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHE 309
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RL 238
+D++ W +M+ G +A Q EALELFK+M G+ PDE +V+VLSAC+ L G RL
Sbjct: 310 RDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRL 369
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT--DCKDVVTWTTMIEGLANY 296
H++I Q+ + A++DMY+KCGS++ AL F + + K + +MI GLA +
Sbjct: 370 YHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQH 429
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
GLG A+ VF ++ G+KP+E TFV VL AC HSGLI EG +LF M Y ++P +EH
Sbjct: 430 GLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEH 489
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL R G L +A + ++ MP E + ++ALLSAC T+ +G+ ++++
Sbjct: 490 YGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEME 549
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Q YVLLSN A W E + R+ M++ RK PG S I+L
Sbjct: 550 AQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIEL 595
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/417 (27%), Positives = 190/417 (45%), Gaps = 74/417 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY---GRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
G +HA L I+ + LI F+ G +R+LF ++ ++ WNT++
Sbjct: 25 GLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRG 84
Query: 59 YNDFSDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y+ + E ++L+ +I +GI + T L ++CARL L G VH + K G E
Sbjct: 85 YSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFES 144
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L + NAL+ +Y+ ++ A LFDE R++VS N +I GY ++
Sbjct: 145 DLFVRNALIHLYSVFGNLNLARTLFDE-SLVRDLVSYNTMIKGYAEV------------- 190
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
QPE AL LF +M + G+ PDE V++ S CS L+ G+
Sbjct: 191 ------------------NQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGK 232
Query: 238 LVHRFILQN--NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--------------- 280
+H + +N +I + +K+A++DMY+KCG + A F
Sbjct: 233 QIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYA 292
Query: 281 -----------------KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
+DV++WT MI G + G +EAL +F +ME GIKP+E T V+
Sbjct: 293 RCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVA 352
Query: 324 VLAACRHSGLITEGCQLFRRM--GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
VL+AC G G +L+ + GV+ + ++D+ ++ G + A E +
Sbjct: 353 VLSACARLGAFDLGKRLYHQYIENGVFNQNTILT--AAVMDMYAKCGSIDSALEIFR 407
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 176/351 (50%), Gaps = 26/351 (7%)
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNILINGYI---DMELVDLA 170
++L ++L L+ + CK + L++ + G I S++ LI+ + + +D +
Sbjct: 5 FLLENPSSLCLLES-CKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHS 63
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS-VLSACSS 229
R +F +I ++ +W +M+ G ++ P EA+ L+ MI +G+ P +L++C+
Sbjct: 64 RLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCAR 123
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
LS+L+ G VH I+++ D FV+ ALI +YS G+L A F ++ +D+V++ TM
Sbjct: 124 LSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTM 183
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I+G A AL +F +M+ GI P+E TFV++ + C G Q+ + VY+
Sbjct: 184 IKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQ---VYK 240
Query: 350 VQPTIEHFVCL----VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
+I+ + L VD+ ++ GL+ AE M ++ +++ E ++
Sbjct: 241 NLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVA 300
Query: 406 KKVANNMMKLGNQSHE----AYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
+K+ N+M HE ++ + + Y+ G +E E + M+ L +
Sbjct: 301 RKLFNHM-------HERDVISWTAMISGYSQAGQCSEALELFKEMEALGIK 344
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 330 bits (846), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 180/465 (38%), Positives = 275/465 (59%), Gaps = 6/465 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + KT L+SD YV NSL+ Y + +FD+MP RDV SWN L+S Y
Sbjct: 49 GEKVHGYAVKTGLESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVG 108
Query: 62 FSDSGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + +F+++ E + AD+ T+V SAC+ L+ L G+ ++ Y E +
Sbjct: 109 HGRFEDAISVFQRMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVV-TEFEMSVR 167
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
NAL+ M+ KC +D+A +FD M +N+ +++GY+ D ARE+F+ K
Sbjct: 168 TGNALVDMFCKCGCLDKARAIFDSM-RDKNVKCWTSMVSGYVSNGRTDEARELFERSPVK 226
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VLW +MM+G V+ + +EALELF+ M + PD V+VS+L+ C+ L+ G+ +H
Sbjct: 227 DVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIH 286
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I +N +T D V TAL+DMY+KCG +E AL FY+ +D +WT++I GLA G+
Sbjct: 287 GYIRENRVTVDKVVGTALVDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSG 346
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL ++Y+ME G++ ++ TFV+VL AC H G + EG ++F M +++QP EH+ CL
Sbjct: 347 RALDLYYEMENVGVRLDDITFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSCL 406
Query: 361 VDLLSRAGLLYQAEEFIKIMPAE-DKFI--SYKALLSACITYSEFDLGKKVANNMMKLGN 417
+DLL RAGLL +AEE I M E DK + Y +LLSA Y + ++VA + K+
Sbjct: 407 IDLLCRAGLLDEAEELIDKMHGERDKTLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEV 466
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A+ LL++ YA W +V RR MK+L RK PG S I++
Sbjct: 467 SDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEV 511
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 158/341 (46%), Gaps = 70/341 (20%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
+VL LF +L +G+ D TL ++ + RL K+ G+ VH YA K GLE + N+L+
Sbjct: 13 KVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTGLESDSYVCNSLM 72
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
MYA +M+ ++FDEM R++VS N LI+ Y+
Sbjct: 73 GMYAALGKMEITHKVFDEM-PERDVVSWNGLISSYVG----------------------- 108
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
HG + E+A+ +F++M E + DE +VS LSACS L NL+ G ++R+++
Sbjct: 109 ---HG-----RFEDAISVFQRMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVV- 159
Query: 246 NNITQDAFVKTALIDMYSKCGSL-------------------------------EEALVT 274
AL+DM+ KCG L +EA
Sbjct: 160 TEFEMSVRTGNALVDMFCKCGCLDKARAIFDSMRDKNVKCWTSMVSGYVSNGRTDEAREL 219
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F ++ KDVV WT M+ G + +EAL +F M+ I+P+ VS+L C +G +
Sbjct: 220 FERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQTGAL 279
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQA 373
+G + G + + T++ V LVD+ ++ G + A
Sbjct: 280 EQGKWIH---GYIRENRVTVDKVVGTALVDMYAKCGCIETA 317
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 109/223 (48%), Gaps = 6/223 (2%)
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247
M+ ++K + L LF ++ +G+ PD + VL + L + G VH + ++
Sbjct: 1 MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
+ D++V +L+ MY+ G +E F + +DVV+W +I +G +A+ VF
Sbjct: 61 LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQ 120
Query: 308 QMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366
+M R+ +K +E T VS L+AC + G +++R + V + ++ LVD+ +
Sbjct: 121 RMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYV--VTEFEMSVRTGNALVDMFCK 178
Query: 367 AGLLYQAEEFIKIMPAEDKFIS-YKALLSACITYSEFDLGKKV 408
G L +A M DK + + +++S ++ D +++
Sbjct: 179 CGCLDKARAIFDSM--RDKNVKCWTSMVSGYVSNGRTDEAREL 219
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 179/465 (38%), Positives = 277/465 (59%), Gaps = 6/465 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA V KT L+ D YV NSL+ Y + L +F++MP RD SWN ++S Y
Sbjct: 127 GEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVR 186
Query: 62 FSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E + +++++ E ++ T+V SACA L L GK +H Y L+
Sbjct: 187 CKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIAN-ELDLTPI 245
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
M NALL MY KC + A +FD M +N+ ++ GY+ +D AR +F+ +
Sbjct: 246 MGNALLDMYCKCGCVSVAREIFDAM-IVKNVNCWTSMVTGYVICGQLDQARYLFERSPSR 304
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VLW +M++G V+ E+A+ LF +M GV PD+ ++V++L+ C+ L L+ G+ +H
Sbjct: 305 DVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIH 364
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I +N I DA V TALI+MY+KCG +E++L F D +WT++I GLA G +
Sbjct: 365 NYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTS 424
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F M+ G+KP++ TFV+VL+AC H+GL+ EG +LF M +Y ++P +EH+ C
Sbjct: 425 EALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCF 484
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFIS---YKALLSACITYSEFDLGKKVANNMMKLGN 417
+DLL RAGLL +AEE +K +P ++ I Y ALLSAC TY D+G+++A + K+ +
Sbjct: 485 IDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKS 544
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ LL++ YA W +V + R MK+L +K PG S I++
Sbjct: 545 SDSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEV 589
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 168/369 (45%), Gaps = 67/369 (18%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL--FTDARVLFDKMPFRDVGSWNTLMSIYN 60
K + AH+ L D + N L+ F +L F A +F+ + + +N ++ +
Sbjct: 25 KQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFV 84
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ LF+QL G+ D T + + ++ G+ +H + K GLE+
Sbjct: 85 KRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPY 144
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ MYA+ ++ ++F+EM R+ VS NI+I+GY
Sbjct: 145 VCNSLMDMYAELGLVEGFTQVFEEM-PERDAVSWNIMISGY------------------- 184
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
V+ K+ EEA++++++M ++ P+E +VS LSAC+ L NL+ G+ +
Sbjct: 185 ------------VRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEI 232
Query: 240 HRFILQNNITQDAFVKTALIDMYSK-------------------------------CGSL 268
H +I N + + AL+DMY K CG L
Sbjct: 233 HDYI-ANELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQL 291
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
++A F ++ +DVV WT MI G + +A+ +F +M+ +G++P++ V++L C
Sbjct: 292 DQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGC 351
Query: 329 RHSGLITEG 337
G + +G
Sbjct: 352 AQLGALEQG 360
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 5/230 (2%)
Query: 154 LNILINGYIDMELVDL--AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
LN L+ +D L D A +F+ I + ++ M+ VK A+ LF+++ +
Sbjct: 43 LNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRER 102
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
GV PD VL + ++ G +H F+++ + D +V +L+DMY++ G +E
Sbjct: 103 GVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGF 162
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME-RKGIKPNEATFVSVLAACRH 330
F + +D V+W MI G EA+ V+ +M+ KPNEAT VS L+AC
Sbjct: 163 TQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAV 222
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
+ G ++ + + P + + L+D+ + G + A E M
Sbjct: 223 LRNLELGKEIHDYIANELDLTPIMGN--ALLDMYCKCGCVSVAREIFDAM 270
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 175/448 (39%), Positives = 276/448 (61%), Gaps = 3/448 (0%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ ++ NS+I +G+ +A LF++M +D+ SW+ L+S Y E LILFK+
Sbjct: 220 ERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKE 279
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+ GI+ D++ ++ + SAC+RL + GK VH KVG+E +N++NAL+ MY+ C+E
Sbjct: 280 MNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEE 339
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+ A +LF E I S N +I+GY+ ++ AR +FD + DKD V W +M+ G +
Sbjct: 340 VVTAQKLFSESCCLDQI-SWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQ 398
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+ E L LF++M EG PDE ++VSV+SAC+ L+ L G+ +H +I +N + + +
Sbjct: 399 QDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIIL 458
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
T LI+MY K G +E+AL F + K V TW +I GLA GL +++L+ F +M+ G+
Sbjct: 459 GTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGV 518
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
PNE TFV+VL ACRH GL+ EG + F M +++ P I+H+ C+VDLL RAG+L +AE
Sbjct: 519 TPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAE 578
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY-VLLSNFYALE 433
E I+ MP ++ ALL AC Y + + G+++ +++L + H+ + VLLSN YA +
Sbjct: 579 ELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVEL-HPDHDGFNVLLSNIYASK 637
Query: 434 GHWTEVAEARRNMKELQTRKKPGNSIID 461
G+W +V E R M++ K PG S+I+
Sbjct: 638 GNWVDVLEVRGMMRQHGVVKTPGCSMIE 665
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 134/482 (27%), Positives = 218/482 (45%), Gaps = 84/482 (17%)
Query: 53 NTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA-RLEKLHYGKTVHCYAT 111
NT+M Y + + + ++K ++ + AD T ILF +C+ RL + GK + +
Sbjct: 95 NTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFD-GKCIQDHVL 153
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
KVG + + ++N L+ MYA C + +A ++FD S ++VS N ++ GY+ + V+ A+
Sbjct: 154 KVGFDSDVYIQNTLINMYAVCGNLSDARKVFDG-SSVLDMVSWNSMLAGYVLVGNVEEAK 212
Query: 172 EVFD-------------------------------EIVDKDIVLWRSMMHGCVKAKQPEE 200
+V+D E+ KD+V W +++ + + EE
Sbjct: 213 DVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEE 272
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
AL LFK+M G+ DE V++SVLSACS L + G+LVH +++ I ++ ALI
Sbjct: 273 ALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIH 332
Query: 261 MYS-------------------------------KCGSLEEALVTFYKTDCKDVVTWTTM 289
MYS KCG +E+A F KD V+W+ M
Sbjct: 333 MYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAM 392
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG--CQLFRRMGGV 347
I G A E L +F +M+ +G KP+E VSV++AC H + +G + R G
Sbjct: 393 ISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNG- 451
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS-YKALLSACITYSEFDLGK 406
++ I L+++ + G + A E K + E+K +S + AL+ D
Sbjct: 452 --LKINIILGTTLINMYMKLGCVEDALEVFKGL--EEKGVSTWNALILGLAMNGLVDKSL 507
Query: 407 KVANNMMKLGNQSHEAYVLLSNFYALEG---HWTEVAEARRNMKELQTRKKPGNSIIDLK 463
K + M + G +E F A+ G H V E R+ + K G +I K
Sbjct: 508 KTFSEMKEHGVTPNEI-----TFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNI---K 559
Query: 464 HY 465
HY
Sbjct: 560 HY 561
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 119/266 (44%), Gaps = 17/266 (6%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
++ + ++F I + + + +MM G ++ P +A+ ++K M++ V D + +
Sbjct: 76 INQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQS 135
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
CS G+ + +L+ D +++ LI+MY+ CG+L +A F + D+V+W
Sbjct: 136 CSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSW 195
Query: 287 TTMIEGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
+M+ G G EA V+ +M ER I N S++ G + E C+LF M
Sbjct: 196 NSMLAGYVLVGNVEEAKDVYDRMPERNVIASN-----SMIVLFGKKGNVEEACKLFNEMK 250
Query: 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS---YKALLSACITYSEF 402
Q + + L+ + + +A K M A + ++LSAC
Sbjct: 251 -----QKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVV 305
Query: 403 DLGKKVANNMMKLGNQSHEAYVLLSN 428
GK V ++K+G E YV L N
Sbjct: 306 ITGKLVHGLVVKVGI---ETYVNLQN 328
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/465 (36%), Positives = 269/465 (57%), Gaps = 3/465 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ HA KT D Y G+SL+ Y + AR +FD+MP R + WN ++ Y
Sbjct: 68 GRKAHAAAIKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIR 127
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L +Q+ G+ D++TLV +AC+R L G+ +H Y V + L +
Sbjct: 128 CGRYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV-FGFNLPV 186
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL MY K ++EA++LF++M +R NI+S IL++GY +D AR +F++ +KD
Sbjct: 187 ANALLDMYTKNDCLEEAVKLFEQMPAR-NIISWTILVSGYGLAGQLDKARVLFNQCKEKD 245
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++LW +M++ CV+ EEAL LF+ M + V PD +V++L+ C++L L G +H+
Sbjct: 246 LILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQ 305
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ Q + DA + TALIDMYSKCG +E++L F++ +D WT +I GLA G
Sbjct: 306 YAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGR 365
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M+R +KP+ TF+ VL+AC H GL+ EG + F M VY+++P +EH+ CLV
Sbjct: 366 ALELFQDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLV 425
Query: 362 DLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+LL RAGLL +AE I +P +D + ALL+AC + ++ +++ + + +Q
Sbjct: 426 NLLGRAGLLDEAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQIT 485
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+ +L+SN YA W +V R M +K G S+I++K Y
Sbjct: 486 DVNLLMSNVYATASRWEDVIRVRGKMAHPTVKKTAGCSLIEVKGY 530
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 141/322 (43%), Gaps = 38/322 (11%)
Query: 53 NTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK 112
N L+ V+ ++ L G+VAD T + A L+ G+ H A K
Sbjct: 18 NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAIK 77
Query: 113 VGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLARE 172
G + ++L+ MY +D A ++FDEM SR
Sbjct: 78 TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSR------------------------ 113
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
+VLW M+ ++ + A+ L ++M GVTPD +V+ ++ACS +
Sbjct: 114 --------ALVLWNMMVRCYIRCGRYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARD 165
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L GR +H + + N + V AL+DMY+K LEEA+ F + +++++WT ++ G
Sbjct: 166 LSLGRRIHVY-MDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSG 224
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
G ++A +F Q + K + + +++ AC G E LFR M + RV+P
Sbjct: 225 YGLAGQLDKARVLFNQCKEKDL----ILWTAMINACVQHGCFEEALTLFRDM-QMQRVEP 279
Query: 353 TIEHFVCLVDLLSRAGLLYQAE 374
V L+ + G L Q E
Sbjct: 280 DRFTVVTLLTCCANLGALDQGE 301
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 91/201 (45%), Gaps = 3/201 (1%)
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ D VL A L GR H ++ DA+ ++L++MY+ G ++
Sbjct: 43 RGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAIKTGFRWDAYTGSSLMEMYTMLGRVDI 102
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F + + +V W M+ G + A+ + QMER G+ P+ T V+ + AC
Sbjct: 103 ARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQMERSGVTPDRVTLVTAVTACSR 162
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+ ++ G ++ M V+ + + L+D+ ++ L +A + + MPA + IS+
Sbjct: 163 ARDLSLGRRIHVYMDNVFGFNLPVAN--ALLDMYTKNDCLEEAVKLFEQMPARN-IISWT 219
Query: 391 ALLSACITYSEFDLGKKVANN 411
L+S + D + + N
Sbjct: 220 ILVSGYGLAGQLDKARVLFNQ 240
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/465 (36%), Positives = 269/465 (57%), Gaps = 3/465 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ HA KT D Y G+SL+ Y + AR +FD+MP R + WN ++ Y
Sbjct: 68 GRKAHAAAVKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIR 127
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L +Q+ G+ D++TLV +AC+R L G+ +H Y V + L +
Sbjct: 128 CGWYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV-FGFNLPV 186
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL MY K ++EA++LF++M +R NI+S IL++GY +D AR +F++ +KD
Sbjct: 187 ANALLDMYTKNDCLEEAVKLFEQMPAR-NIISWTILVSGYGLAGQLDKARVLFNQCKEKD 245
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++LW +M++ CV+ EEAL LF+ M + V PD +V++L+ C++L L G +H+
Sbjct: 246 LILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQ 305
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ Q + DA + TALIDMYSKCG +E++L F++ +D WT +I GLA G
Sbjct: 306 YAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGR 365
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M+R +KP+ TF+ VL+AC H GL+ EG + F M VY+++P +EH+ CLV
Sbjct: 366 ALELFQDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLV 425
Query: 362 DLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+LL RAGLL +AE I +P +D + ALL+AC + ++ +++ + + +Q
Sbjct: 426 NLLGRAGLLDEAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQIT 485
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+ +L+SN YA W +V R M +K G S+I++K Y
Sbjct: 486 DVNLLMSNVYATASRWEDVIRVRGKMAHPTVKKNAGCSLIEVKGY 530
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 140/322 (43%), Gaps = 38/322 (11%)
Query: 53 NTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK 112
N L+ V+ ++ L G+VAD T + A L+ G+ H A K
Sbjct: 18 NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAVK 77
Query: 113 VGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLARE 172
G + ++L+ MY +D A ++FDEM SR
Sbjct: 78 TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSR------------------------ 113
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
+VLW M+ ++ A+ L ++M GVTPD +V+ ++ACS +
Sbjct: 114 --------ALVLWNMMVRCYIRCGWYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARD 165
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L GR +H + + N + V AL+DMY+K LEEA+ F + +++++WT ++ G
Sbjct: 166 LSLGRRIHVY-MDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSG 224
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
G ++A +F Q + K + + +++ AC G E LFR M + RV+P
Sbjct: 225 YGLAGQLDKARVLFNQCKEKDL----ILWTAMINACVQHGCFEEALTLFRDM-QMQRVEP 279
Query: 353 TIEHFVCLVDLLSRAGLLYQAE 374
V L+ + G L Q E
Sbjct: 280 DRFTVVTLLTCCANLGALDQGE 301
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 91/201 (45%), Gaps = 3/201 (1%)
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ D VL A L GR H ++ DA+ ++L++MY+ G ++
Sbjct: 43 RGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAVKTGFRWDAYTGSSLMEMYTMLGRVDI 102
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F + + +V W M+ G + A+ + QMER G+ P+ T V+ + AC
Sbjct: 103 ARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQMERSGVTPDRVTLVTAVTACSR 162
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+ ++ G ++ M V+ + + L+D+ ++ L +A + + MPA + IS+
Sbjct: 163 ARDLSLGRRIHVYMDNVFGFNLPVAN--ALLDMYTKNDCLEEAVKLFEQMPARN-IISWT 219
Query: 391 ALLSACITYSEFDLGKKVANN 411
L+S + D + + N
Sbjct: 220 ILVSGYGLAGQLDKARVLFNQ 240
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 172/462 (37%), Positives = 271/462 (58%), Gaps = 1/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG + V K D D+Y+ N +IH + A +FD+ RD+ SWN+L++ Y
Sbjct: 172 MGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYV 231
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E + +++Q+I E + D++T++ + SACA+LE L G+ +H Y + GL ++
Sbjct: 232 RRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKIS 291
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MY KC +++ LFD M ++ +VS +I GY L+D+A ++F ++ +K
Sbjct: 292 LVNALMDMYVKCGDLEAGKVLFDNM-RKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEK 350
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++V W +M+ CV+A EALELF++M + PD+ M+ LSACS L L G H
Sbjct: 351 NVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTH 410
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I ++N++ D + TALIDMY+KCG++ +AL F + ++ +TWT +I GLA YG N
Sbjct: 411 NYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVN 470
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+A+ F +M G+ P+E TF+ VL AC H GL+ EG + F +M + + P +H+ C+
Sbjct: 471 DAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCM 530
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
V+LL RAGLL +AEE IK MP E + + AL AC + +G++ A+ ++ L
Sbjct: 531 VNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDPHDS 590
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL+N Y G W E R+ M E K PG+S I++
Sbjct: 591 GIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEV 632
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 168/349 (48%), Gaps = 47/349 (13%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVL------FDKMPFRDVGSWNTLM 56
K + A + T L D + + LI F +++R L + + +V SWN ++
Sbjct: 70 KQIQAQMILTGLILDGFASSRLISF----CAISESRNLDYCIKILNNLQNPNVFSWNAVI 125
Query: 57 SIYNDFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
+ + + L+L+K+++ G D T LF CA L + G + K+G
Sbjct: 126 RGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGF 185
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ + + N ++ M E A ++FDE G R++VS N LINGY
Sbjct: 186 DKDMYLYNGIIHMLVSVGESGLAHKVFDE-GCVRDLVSWNSLINGY-------------- 230
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
V+ +QP EA+ ++++MI E V PDE M+ V+SAC+ L +L+
Sbjct: 231 -----------------VRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKL 273
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
GR +HR+I ++ + + AL+DMY KCG LE V F K VV+WTTMI G A
Sbjct: 274 GREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAK 333
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
GL + A ++F+ M K N + +++ +C + L E +LFR M
Sbjct: 334 NGLLDMAGKLFHDMPEK----NVVAWNAMIGSCVQANLSFEALELFREM 378
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 111/250 (44%), Gaps = 19/250 (7%)
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
F +C L H T T + + N LL + CK + ++ +M
Sbjct: 23 FFSCLSLHS-HSFSTHKSNPTSWNTTHTYVLSNPLLSLLENCKSFSQLKQIQAQM----- 76
Query: 151 IVSLNILINGYIDMELV-----------DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
+ ++++G+ L+ D ++ + + + ++ W +++ GCV+++ P+
Sbjct: 77 -ILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQ 135
Query: 200 EALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTAL 258
+ L L+K+M+ G PD + C++L G + +L+ +D ++ +
Sbjct: 136 KGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGI 195
Query: 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
I M G A F + +D+V+W ++I G EA+ ++ QM + +KP+E
Sbjct: 196 IHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDE 255
Query: 319 ATFVSVLAAC 328
T + V++AC
Sbjct: 256 VTMIGVVSAC 265
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 168/463 (36%), Positives = 273/463 (58%), Gaps = 2/463 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH K+A+ SD++V NSLIH Y A +F + +DV SWN++++ +
Sbjct: 151 LGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFV 210
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L LFK++ E + A +T+V + SACA++ L +G+ V Y + + L
Sbjct: 211 QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLT 270
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NA+L MY KC +++A RLFD M + N V+ +++GY E + AREV + + K
Sbjct: 271 LANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAISEDYEAAREVLNAMPKK 329
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
DIV W +++ + +P EAL +F ++ + + + ++ +VS LSAC+ + L+ GR +
Sbjct: 330 DIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWI 389
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I +N I + +V +ALI MYSKCG LE+A F + +DV W+ MI GLA +G G
Sbjct: 390 HSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCG 449
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+EA+ +FY+M+ +KPN TF +V AC H+GL+ E LF +M Y + P +H+ C
Sbjct: 450 SEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYAC 509
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VD+L R+G L +A +FI+ MP + ALL AC ++ L + +++L ++
Sbjct: 510 IVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRN 569
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A+VLLSN YA G W V+E R++M+ +K+PG S I++
Sbjct: 570 DGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEI 612
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 193/424 (45%), Gaps = 75/424 (17%)
Query: 3 KGLHAHVTKTALDSDIYVGNSL--IHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K HAH+ +T + SD Y + L I A AR +FD++P + +WNTL+ Y
Sbjct: 48 KQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYA 107
Query: 61 DFSDSGEVLILFKQLIF--EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
D + F ++ +K T L A A + L G+++H A K +
Sbjct: 108 SGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSD 167
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + N+L+ Y C ++D A ++F + +++VS N +ING+
Sbjct: 168 VFVANSLIHCYFSCGDLDSACKVFTTI-KEKDVVSWNSMINGF----------------- 209
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
V+ P++ALELFKKM E V MV VLSAC+ + +L++GR
Sbjct: 210 --------------VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRR 255
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA---- 294
V +I +N + + + A++DMY+KCGS+E+A F + KD VTWTTM++G A
Sbjct: 256 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 315
Query: 295 ---------------------------NYGLGNEALRVFYQME-RKGIKPNEATFVSVLA 326
G NEAL VF++++ +K IK N+ T VS L+
Sbjct: 316 YEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLS 375
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHF---VCLVDLLSRAGLLYQAEEFIKIMPAE 383
AC G + +L R + + +F L+ + S+ G L +A E +
Sbjct: 376 ACAQVGAL----ELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKR 431
Query: 384 DKFI 387
D F+
Sbjct: 432 DVFV 435
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 119/253 (47%), Gaps = 10/253 (3%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI--DEGVTPDEEVMVSVL 224
++ AR+VFDEI + W +++ P ++ F M+ + P++ ++
Sbjct: 81 LEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLI 140
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
A + +S+L G+ +H +++ + D FV +LI Y CG L+ A F KDVV
Sbjct: 141 KAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVV 200
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
+W +MI G G ++AL +F +ME + +K + T V VL+AC + RR+
Sbjct: 201 SWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAK----IRDLEFGRRV 256
Query: 345 GGVY---RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
RV + ++D+ ++ G + A+ M +D +++ +L +
Sbjct: 257 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAISED 315
Query: 402 FDLGKKVANNMMK 414
++ ++V N M K
Sbjct: 316 YEAAREVLNAMPK 328
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 180/488 (36%), Positives = 268/488 (54%), Gaps = 32/488 (6%)
Query: 5 LHAHVTKTALDSDI-YVGNSLIHFYGRMALFTDARVLFDKM------------------- 44
LHA +T L S +V NSLIH Y R+ L DAR FD++
Sbjct: 128 LHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMG 187
Query: 45 ------------PFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFS 92
P RDV SW +L++ Y+ + + E + FK ++ GI D++T++ + S
Sbjct: 188 MLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLS 247
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
ACA+L+ L G+++H + G+ N+ AL+ MYAKC + A ++FD +G
Sbjct: 248 ACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ 307
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
S N +I+GY VD+AR +FDE+ +DI+ + SMM G + + Q EAL LF M
Sbjct: 308 SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHD 367
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ D +V++L+AC+SL LQ GR +H I Q + D ++ TAL+DMY KCG ++EA
Sbjct: 368 LRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEAT 427
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
+ F + +DV TWT MI GLA G+G AL FYQM G +PN ++++VL AC HS
Sbjct: 428 IVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSC 487
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392
L+ EG F M +Y + P IEH+ C++DLL R+GLL +A + +K MP + + + ++
Sbjct: 488 LLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASI 547
Query: 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
LSAC + DL + A +++KL YV L N Y W ++ R M+E Q +
Sbjct: 548 LSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVK 607
Query: 453 KKPGNSII 460
K G S I
Sbjct: 608 KTAGYSSI 615
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 152/334 (45%), Gaps = 37/334 (11%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99
LFD+MP L + SD +LF+++ G+ D T LF + +
Sbjct: 59 LFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSR 118
Query: 100 LH---YGKTVHCYATKVGLEYMLN-MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLN 155
H +H + L + N+L+ MY + +A R FDE+ + + V+
Sbjct: 119 PHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVK-DAVAWT 177
Query: 156 ILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215
+LI+G M ++ + + + +D++ W S++ +A + EA+ FK M+ G+ P
Sbjct: 178 MLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAP 237
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS-------- 267
DE +++VLSAC+ L +L+ GR +H + + + + ALIDMY+KCG
Sbjct: 238 DEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVF 297
Query: 268 ------------------------LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++ A F + + +D++T+ +M+ G + G EAL
Sbjct: 298 DALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREAL 357
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+F M R ++ + T V++L AC G + +G
Sbjct: 358 LLFMSMRRHDLRVDNFTVVNLLTACASLGALQQG 391
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 142/361 (39%), Gaps = 97/361 (26%)
Query: 1 MGKGLHAHVTKTALDS---------DIYVG-----------------------NSLIHFY 28
+G+ LH V + + + D+Y N++I Y
Sbjct: 257 LGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGY 316
Query: 29 GRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLV 88
+ AR LFD+M RD+ ++N++M+ Y E L+LF + + D T+V
Sbjct: 317 CKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVV 376
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
L +ACA L L G+ +H + +E + + ALL MY KC +DEA +F MG R
Sbjct: 377 NLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKR 436
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
D+ W +M+ G + ALE F +M
Sbjct: 437 --------------------------------DVHTWTAMIAGLAFNGMGKAALEHFYQM 464
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+G P+ ++VL+ACS L GRL + + I +Y+ +
Sbjct: 465 RCDGFQPNSVSYIAVLTACSHSCLLNEGRL---YFDEMRI------------LYNIHPQI 509
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E + MI+ L GL +EA+ + M I+PN + S+L+AC
Sbjct: 510 EH---------------YGCMIDLLGRSGLLDEAMDLVKTMP---IQPNAVIWASILSAC 551
Query: 329 R 329
R
Sbjct: 552 R 552
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IY 59
G+ LHA + + +++DIY+G +L+ Y + +A ++F +M RDV +W +++ +
Sbjct: 391 GRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAF 450
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N + L F Q+ +G + ++ + + +AC+ L+ G+ Y ++ + Y +
Sbjct: 451 NGMGKAA--LEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRL---YFDEMRILYNI 505
Query: 120 NME----NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
+ + ++ + + +DEA+ L M + N V +++ + +DLA+
Sbjct: 506 HPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQ 561
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 180/488 (36%), Positives = 268/488 (54%), Gaps = 32/488 (6%)
Query: 5 LHAHVTKTALDSDI-YVGNSLIHFYGRMALFTDARVLFDKM------------------- 44
LHA +T L S +V NSLIH Y R+ L DAR FD++
Sbjct: 128 LHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMG 187
Query: 45 ------------PFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFS 92
P RDV SW +L++ Y+ + + E + FK ++ GI D++T++ + S
Sbjct: 188 MLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLS 247
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
ACA+L+ L G+++H + G+ N+ AL+ MYAKC + A ++FD +G
Sbjct: 248 ACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ 307
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
S N +I+GY VD+AR +FDE+ +DI+ + SMM G + + Q EAL LF M
Sbjct: 308 SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHD 367
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ D +V++L+AC+SL LQ GR +H I Q + D ++ TAL+DMY KCG ++EA
Sbjct: 368 LRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEAT 427
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
+ F + +DV TWT MI GLA G+G AL FYQM G +PN ++++VL AC HS
Sbjct: 428 IVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSC 487
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392
L+ EG F M +Y + P IEH+ C++DLL R+GLL +A + +K MP + + + ++
Sbjct: 488 LLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASI 547
Query: 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
LSAC + DL + A +++KL YV L N Y W ++ R M+E Q +
Sbjct: 548 LSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVK 607
Query: 453 KKPGNSII 460
K G S I
Sbjct: 608 KTAGYSSI 615
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 152/334 (45%), Gaps = 37/334 (11%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99
LFD+MP L + SD +LF+++ G+ D T LF + +
Sbjct: 59 LFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSR 118
Query: 100 LH---YGKTVHCYATKVGLEYMLN-MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLN 155
H +H + L + N+L+ MY + +A R FDE+ + + V+
Sbjct: 119 PHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVK-DAVAWT 177
Query: 156 ILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215
+LI+G M ++ + + + +D++ W S++ +A + EA+ FK M+ G+ P
Sbjct: 178 MLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAP 237
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS-------- 267
DE +++VLSAC+ L +L+ GR +H + + + + ALIDMY+KCG
Sbjct: 238 DEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVF 297
Query: 268 ------------------------LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++ A F + + +D++T+ +M+ G + G EAL
Sbjct: 298 DALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREAL 357
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+F M R ++ + T V++L AC G + +G
Sbjct: 358 LLFMSMRRHDLRVDNFTVVNLLTACASLGALQQG 391
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 142/361 (39%), Gaps = 97/361 (26%)
Query: 1 MGKGLHAHVTKTALDS---------DIYVG-----------------------NSLIHFY 28
+G+ LH V + + + D+Y N++I Y
Sbjct: 257 LGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGY 316
Query: 29 GRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLV 88
+ AR LFD+M RD+ ++N++M+ Y E L+LF + + D T+V
Sbjct: 317 CKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVV 376
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
L +ACA L L G+ +H + +E + + ALL MY KC +DEA +F MG R
Sbjct: 377 NLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKR 436
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
D+ W +M+ G + ALE F +M
Sbjct: 437 --------------------------------DVHTWTAMIAGLAFNGMGKAALEHFYQM 464
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+G P+ ++VL+ACS L GRL + + I +Y+ +
Sbjct: 465 RCDGFQPNSVSYIAVLTACSHSCLLNEGRL---YFDEMRI------------LYNIHPQI 509
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E + MI+ L GL +EA+ + M I+PN + S+L+AC
Sbjct: 510 EH---------------YGCMIDLLGRSGLLDEAMDLVKTMP---IQPNAVIWASILSAC 551
Query: 329 R 329
R
Sbjct: 552 R 552
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IY 59
G+ LHA + + +++DIY+G +L+ Y + +A ++F +M RDV +W +++ +
Sbjct: 391 GRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAF 450
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N + L F Q+ +G + ++ + + +AC+ L+ G+ Y ++ + Y +
Sbjct: 451 NGMGKAA--LEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRL---YFDEMRILYNI 505
Query: 120 NME----NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
+ + ++ + + +DEA+ L M + N V +++ + +DLA+
Sbjct: 506 HPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQ 561
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 176/464 (37%), Positives = 264/464 (56%), Gaps = 37/464 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K L SD+YV N+L+ Y + AR +FD P RD+ SW T++ Y
Sbjct: 144 GEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVK 203
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK---VGLEYM 118
+ E + LF ++ E + AD +TLVI+ S+CARL L G+ +H Y + V L+
Sbjct: 204 MGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVF 263
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ NAL+ MY KC + + AR+VF E+
Sbjct: 264 VG--NALVDMYLKCGD--------------------------------ANFARKVFQEMP 289
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K++V W SM+ G + Q +E+L +F+KM GV PD+ +V+VL++C++L L+ G+
Sbjct: 290 VKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKW 349
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH ++ +N I D F+ AL+DMY+KCGS+++A F + KDV ++T MI GLA +G
Sbjct: 350 VHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQ 409
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G +AL +F +M + GI+P+E TFV VL AC H GL+ EG + F M +Y ++P +EH+
Sbjct: 410 GGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYG 469
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDLL RAGL+ +AEEFI+ MP E ALL AC + + +LG+ V + K+ +
Sbjct: 470 CMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPR 529
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
AYVL+SN Y+ W + + R+ MKE K PG S I+L
Sbjct: 530 KDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIEL 573
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 225/458 (49%), Gaps = 48/458 (10%)
Query: 3 KGLHAHVTKT--ALDSDIYVGNSLIHFYGRMALFTDAR---VLFDKMPFRDVGSWNTLM- 56
K +HA + KT + D+ + + L + +L D R L ++ ++ +N ++
Sbjct: 39 KQIHASIIKTMPSPDAQLTISTRLSALCAQ-SLPIDPRYALSLLAQLRTPNLPLYNAIIR 97
Query: 57 SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
+ +DS E L+++KQ++ +GIV D T+ + ACA + G+ VH A K+GL
Sbjct: 98 GLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLA 157
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + N L+ MYA C + A ++FD +R++VS +I GY+ M AR
Sbjct: 158 SDVYVSNTLMRMYAVCDVIRSARKVFDT-SPQRDLVSWTTMIQGYVKM---GFAR----- 208
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
E + LF +M E + D +V VLS+C+ L +L+ G
Sbjct: 209 -----------------------EGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLG 245
Query: 237 RLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
R +HR+I++N N+ D FV AL+DMY KCG A F + K+VV+W +MI GLA
Sbjct: 246 RKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQ 305
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
G E+L +F +M+R G+KP++ T V+VL +C + G++ G + + R Q +
Sbjct: 306 KGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLD---RNQIRAD 362
Query: 356 HFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
F+ LVD+ ++ G + QA + M +D + SY A++ + + + + M
Sbjct: 363 GFIGNALVDMYAKCGSIDQACWVFQAMNRKDVY-SYTAMIVGLAMHGQGGKALDLFSEMP 421
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451
K+G + E V H V E R+ +++ T
Sbjct: 422 KMGIEPDE--VTFVGVLTACSHVGLVEEGRKYFEDMST 457
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 146/302 (48%), Gaps = 15/302 (4%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPE-EALELFKKMIDEGVTPDEEVMVSVLSACS 228
A + ++ ++ L+ +++ G + E L ++K+M+ +G+ PD + VL AC+
Sbjct: 77 ALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACA 136
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
++ G VH ++ + D +V L+ MY+ C + A F + +D+V+WTT
Sbjct: 137 ESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTT 196
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
MI+G G E + +F++M + ++ + T V VL++C G + G +L R + +
Sbjct: 197 MIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYI--IR 254
Query: 349 RVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406
++ FV LVD+ + G A + + MP ++ +S+ +++S +F
Sbjct: 255 NSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKN-VVSWNSMISGLAQKGQFKESL 313
Query: 407 KVANNMMKLGNQSHEAYVL-----LSNFYALE-GHWTEVAEARRNMKELQTRKKPGNSII 460
+ M +LG + + ++ +N LE G W A RN +++ GN+++
Sbjct: 314 YMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVH-AYLDRN--QIRADGFIGNALV 370
Query: 461 DL 462
D+
Sbjct: 371 DM 372
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 55/104 (52%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA++ + + +D ++GN+L+ Y + A +F M +DV S+ ++
Sbjct: 346 LGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLA 405
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
G+ L LF ++ GI D++T V + +AC+ + + G+
Sbjct: 406 MHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGR 449
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 173/464 (37%), Positives = 267/464 (57%), Gaps = 10/464 (2%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHF-----YGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+HA T + SD +V + ++ F +G + AR LF ++ D+ NTL+ Y
Sbjct: 54 IHAQTITTGIFSDNFVASRILSFAALSPHGSIPY---ARFLFYRIRKPDIFIANTLIRAY 110
Query: 60 NDFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ + ++ + ++ +V D T +L AC+ + L G+ +H + K+G
Sbjct: 111 AFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSE 170
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+++ N L+ MYA C ++ A +FD + S NI+I GY+ + AR +F+ +
Sbjct: 171 VSVSNFLVQMYASCGLIESAGLVFDRT-PECDGASWNIMIGGYLKCGVFKSARRMFEAMP 229
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D+D+V W M++G V+ + +E L LF+ M+ E + P+E V+V+ LSAC+ L ++ G+
Sbjct: 230 DRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQW 289
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+ R++ + N+ + TALIDMYSKCGS+E AL F+K K+V+ W+ MI GLA G
Sbjct: 290 IERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQ 349
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G +AL +F QME +G+KPNE TF+ +L AC HS L+ EGC F M +Y ++P H
Sbjct: 350 GKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHC 409
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDL RAG+L QA+ IK MP + + ALL+AC + + +LG++V +++L
Sbjct: 410 CMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPN 469
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA G W VAE RR M+E Q K PG S IDL
Sbjct: 470 HGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDL 513
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 110/501 (21%), Positives = 194/501 (38%), Gaps = 133/501 (26%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMAL--------------------------- 33
+G+ +H+HV K S++ V N L+ Y L
Sbjct: 154 LGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYL 213
Query: 34 ----FTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
F AR +F+ MP RDV SW+ +++ Y S E L LF+ ++ E I ++ LV
Sbjct: 214 KCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVN 273
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
SACA L + G+ + Y + + + + AL+ MY+KC ++ AL +F +M
Sbjct: 274 ALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMK--- 330
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+K+++ W +M++G Q ++AL LF +M
Sbjct: 331 -----------------------------EKNVLAWSAMINGLAINGQGKDALNLFSQME 361
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+GV P+E + +L+ACS + G H + +A ++D+Y + G L
Sbjct: 362 MQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGML 421
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
++A T+I+ + KPN A + ++L AC
Sbjct: 422 DQA---------------QTVIKSMP-------------------FKPNSAIWGALLNAC 447
Query: 329 RHSGLITEGCQLFRRM-------GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
R G G Q+ +R+ GG Y V L ++ + G + E ++M
Sbjct: 448 RIHGDTELGEQVGKRLLELDPNHGGRY---------VLLSNIYAACGRWDRVAELRRMM- 497
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
E + K + + LG+ HE S+ LE + ++ E
Sbjct: 498 ------------------RERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGE 539
Query: 442 ARRNMKELQTRKKPGNSIIDL 462
+ +K + G ++D+
Sbjct: 540 MSQELKAAGYKPDTGQVLLDM 560
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 168/463 (36%), Positives = 266/463 (57%), Gaps = 16/463 (3%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG + HV DSDI+V N++IH AR +FDK RD+ SWN++++ Y
Sbjct: 97 MGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYV 156
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L ++++ EGI D++T++ + S+CA+LE L G+ HCY + GL+ +
Sbjct: 157 RRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVP 216
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MY KC ++ A +LFD M + + +VS ++ FDE+ DK
Sbjct: 217 LANALMDMYMKCGNLESARKLFDSM-TNKTMVSWTTML---------------FDEMPDK 260
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ G V A + +EAL LF +M + PDE MVS LSACS L L G +H
Sbjct: 261 DVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIH 320
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I ++ ++ + + TALIDMY+KCG + +A+ F + ++ +TWT +I GLA +G +
Sbjct: 321 HYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAH 380
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ F +M + P+E TF+ +L+AC H GL+ EG + F +M + + P ++H+ C+
Sbjct: 381 GAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCM 440
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +AEE IK MP E + + AL AC + +G++ A+ ++++
Sbjct: 441 VDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDS 500
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVLL+N Y W E + R+ M++ K PG S I++
Sbjct: 501 GIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVN 543
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 173/362 (47%), Gaps = 51/362 (14%)
Query: 51 SWNTLMSIYNDFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCY 109
SWN + + D + E ++L+K+++ +G D T +LF ACARL + G + +
Sbjct: 45 SWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGH 104
Query: 110 ATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169
+G + + + NA++ + C ++D A ++FD+ R++VS N +INGY
Sbjct: 105 VLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDK-SCVRDLVSWNSMINGY-------- 155
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
V+ EAL +++M EG+ PDE M+ V+S+C+
Sbjct: 156 -----------------------VRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQ 192
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA----------------LV 273
L +L GR H +I +N + + AL+DMY KCG+LE A +
Sbjct: 193 LEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTM 252
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F + KDVV W MI G + G EAL +F +M+ I P+E T VS L+AC G
Sbjct: 253 LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGA 312
Query: 334 ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
+ G + + + + + L+D+ ++ G + +A + + +P + +++ A++
Sbjct: 313 LDVGIWIHHYIEK-HELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNS-LTWTAII 370
Query: 394 SA 395
S
Sbjct: 371 SG 372
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 171/467 (36%), Positives = 285/467 (61%), Gaps = 10/467 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ ++ V K+ L+ D YV NSL+ Y + + R +F++MP RDV SWN L+S Y
Sbjct: 151 GEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVK 210
Query: 60 -NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ D+ +V +Q + ++ T+V SAC L+ L GK +H Y + L +
Sbjct: 211 CRRYEDAVDVFRRMQQQ--SSLRPNEATVVSTLSACIALKMLELGKEIHRY-VREQLGFT 267
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + NAL+ MY KC + A +F++M + ++ +++GY++ +D ARE+F+
Sbjct: 268 IKIGNALVDMYCKCGHLSIAREIFNDM-PIKTVICWTSMVSGYVNCGQLDEARELFERSP 326
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+D+VLW +M++G V+ + ++A+ LF++M + V+PD +V++L+ C+ L L+ G+
Sbjct: 327 VRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKW 386
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H +I +N I DA V TALI+MY+KCG +E++L F KD +WT++I GLA G
Sbjct: 387 IHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGK 446
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
++AL +F +M + G+KP++ TF+ VL+AC H GL+ EG + FR M VY+++P +EH+
Sbjct: 447 TSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYG 506
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFIS---YKALLSACITYSEFDLGKKVANNMMKL 415
CL+DLL RAG L +AEE I+ P + + Y ALLSAC T+ ++G++VA ++ +
Sbjct: 507 CLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGI 566
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ + LL+N YA W +V + RR MK+L +K PG S +++
Sbjct: 567 ESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEV 613
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 166/353 (47%), Gaps = 74/353 (20%)
Query: 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL 75
+D +GN +H+ R+ + D LF +N ++ + + ++LF+QL
Sbjct: 75 TDPSIGN--LHYAERIFNYIDIPGLF---------IYNLVIKAFTKNGSFRKAVLLFRQL 123
Query: 76 IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135
EG+ D T +F A L ++ G+ V+ + K GLE+ + N+L+ MYA+ +
Sbjct: 124 REEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRV 183
Query: 136 DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195
++F+EM +R++VS N+LI+GY VK
Sbjct: 184 QNLRQVFEEM-PQRDVVSWNVLISGY-------------------------------VKC 211
Query: 196 KQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-------- 246
++ E+A+++F++M + + P+E +VS LSAC +L L+ G+ +HR++ +
Sbjct: 212 RRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIKIG 271
Query: 247 NITQDAFVK----------------------TALIDMYSKCGSLEEALVTFYKTDCKDVV 284
N D + K T+++ Y CG L+EA F ++ +DVV
Sbjct: 272 NALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVV 331
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
WT MI G + ++A+ +F +M+ K + P+ T V++L C G + +G
Sbjct: 332 LWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQG 384
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 124/240 (51%), Gaps = 4/240 (1%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A +F+ I + ++ ++ K +A+ LF+++ +EG++PD V A
Sbjct: 85 AERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGC 144
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
L ++ G V+ F++++ + D +V +L+DMY++ G ++ F + +DVV+W +
Sbjct: 145 LGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVL 204
Query: 290 IEGLANYGLGNEALRVFYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
I G +A+ VF +M+++ ++PNEAT VS L+AC ++ G ++ R +
Sbjct: 205 ISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVR--E 262
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
++ TI+ LVD+ + G L A E MP + I + +++S + + D +++
Sbjct: 263 QLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIK-TVICWTSMVSGYVNCGQLDEAREL 321
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 166/462 (35%), Positives = 273/462 (59%), Gaps = 1/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G + HV K L+ +V N+ IH + +AR +FD+ P RD+ SWN L++ Y
Sbjct: 174 LGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYK 233
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ + + ++K + EG+ D +T++ L S+C+ L L+ GK + Y + GL +
Sbjct: 234 KIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIP 293
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ M++KC ++ EA R+FD + +R IVS +I+GY L+D++R++FD++ +K
Sbjct: 294 LVNALMDMFSKCGDIHEARRIFDNL-EKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEK 352
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VLW +M+ G V+AK+ ++AL LF++M PDE M+ LSACS L L G +H
Sbjct: 353 DVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIH 412
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
R+I + +++ + + T+L+DMY+KCG++ EAL F+ ++ +T+T +I GLA +G +
Sbjct: 413 RYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDAS 472
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ F +M GI P+E TF+ +L+AC H G+I G F +M + + P ++H+ +
Sbjct: 473 TAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIM 532
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A+ ++ MP E + ALL C + +LG+K A +++L
Sbjct: 533 VDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDS 592
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL Y W + ARR M E K PG S I++
Sbjct: 593 GIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEV 634
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/403 (25%), Positives = 180/403 (44%), Gaps = 68/403 (16%)
Query: 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV---ADKITLVILFSACARLEKLHYGK 104
++ SWN + +++ + E +L+KQ++ G D T +LF CA L G
Sbjct: 117 NIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGH 176
Query: 105 TVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM 164
+ + K+ LE + ++ NA + M+A C +M+ A ++FDE R++VS N LINGY
Sbjct: 177 MILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDE-SPVRDLVSWNCLINGY--- 232
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
K + E+A+ ++K M EGV PD+ M+ ++
Sbjct: 233 ----------------------------KKIGEAEKAIYVYKLMESEGVKPDDVTMIGLV 264
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
S+CS L +L G+ + ++ +N + + AL+DM+SKCG + EA F + + +V
Sbjct: 265 SSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIV 324
Query: 285 TWTTMIEGLANYGL-------------------------------GNEALRVFYQMERKG 313
+WTTMI G A GL G +AL +F +M+
Sbjct: 325 SWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSN 384
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
KP+E T + L+AC G + G + R + Y + + LVD+ ++ G + +A
Sbjct: 385 TKPDEITMIHCLSACSQLGALDVGIWIHRYIEK-YSLSLNVALGTSLVDMYAKCGNISEA 443
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ + ++Y A++ + + N M+ G
Sbjct: 444 LSVFHGIQTRNS-LTYTAIIGGLALHGDASTAISYFNEMIDAG 485
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 140/307 (45%), Gaps = 24/307 (7%)
Query: 121 MENALLLMYAKCK----------EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLA 170
+ N LL + KCK +M + D S R I + + Y+D +
Sbjct: 52 LHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSV---- 107
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT---PDEEVMVSVLSAC 227
++ I + +I W + G +++ P+E+ L+K+M+ G PD + C
Sbjct: 108 -KILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVC 166
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+ L G ++ +L+ + + V A I M++ CG +E A F ++ +D+V+W
Sbjct: 167 ADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWN 226
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR--RMG 345
+I G G +A+ V+ ME +G+KP++ T + ++++C G + G + + +
Sbjct: 227 CLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKEN 286
Query: 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
G+ P + L+D+ S+ G +++A + + +S+ ++S D+
Sbjct: 287 GLRMTIPLVN---ALMDMFSKCGDIHEARRIFDNL-EKRTIVSWTTMISGYARCGLLDVS 342
Query: 406 KKVANNM 412
+K+ ++M
Sbjct: 343 RKLFDDM 349
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 171/454 (37%), Positives = 267/454 (58%), Gaps = 1/454 (0%)
Query: 8 HVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGE 67
H+ + I NS+I +G L +A LFD+M +D+ +W+ L++ + E
Sbjct: 300 HIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEE 359
Query: 68 VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLL 127
+ F + G++ D++ V SACA L ++ GK +H + K+G E +N++NAL+
Sbjct: 360 AIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIY 419
Query: 128 MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRS 187
MY+KC ++ A +LFDE +++S N +I+GY+ LVD A+ +FD + +KD+V W S
Sbjct: 420 MYSKCGDIMVARKLFDE-AYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSS 478
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247
M+ G + +E L LF++M G PDE +VSV+SAC+ L+ L+ G+ VH +I +N
Sbjct: 479 MISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNG 538
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
+T + + T LIDMY KCG +E AL FY K + TW +I GLA GL +L +F
Sbjct: 539 LTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFS 598
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367
M++ + PNE TF+ VL ACRH GL+ EG F M +++QP ++H+ C+VDLL RA
Sbjct: 599 NMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRA 658
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427
G L +AEE + MP ++ ALL AC + + ++G++V +++L +VLLS
Sbjct: 659 GKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLS 718
Query: 428 NFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
N YA +G W +V E R M + + K PG S+I+
Sbjct: 719 NIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIE 752
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 151/329 (45%), Gaps = 63/329 (19%)
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
L+K ++ + AD T +L AC+ K VH + K+G + + + N L+ ++
Sbjct: 200 LYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFS 259
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV----------------- 173
C M +A R+F+E S + VS N ++ GYI++ V+ A+ +
Sbjct: 260 VCSNMTDACRVFNE-SSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIV 318
Query: 174 --------------FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
FDE+++KD+V W +++ + + EEA+ F M GV DE V
Sbjct: 319 LFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVV 378
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL----------- 268
VS LSAC++L + G+L+H L+ ++ ALI MYSKCG +
Sbjct: 379 AVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAY 438
Query: 269 --------------------EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
+ A F KDVV+W++MI G A L +E L +F +
Sbjct: 439 LLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQE 498
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEG 337
M+ G KP+E T VSV++AC + +G
Sbjct: 499 MQMSGFKPDETTLVSVISACARLAALEQG 527
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 140/344 (40%), Gaps = 77/344 (22%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
MGK +H+ K +S I + N+LI+ Y + AR LFD+ D+ SWN+++S Y
Sbjct: 394 MGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYL 453
Query: 60 --------------------------------NDFSDSGEVLILFKQLIFEGIVADKITL 87
ND D E L LF+++ G D+ TL
Sbjct: 454 KCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFD--ETLALFQEMQMSGFKPDETTL 511
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
V + SACARL L GK VH Y + GL + + L+ MY KC ++ AL
Sbjct: 512 VSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETAL-------- 563
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
EVF +++K I W +++ G E +L++F
Sbjct: 564 ------------------------EVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSN 599
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQNNITQDAFVKTALIDMY 262
M VTP+E + VL AC + + G+ ++H +Q N+ ++D+
Sbjct: 600 MKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYG----CMVDLL 655
Query: 263 SKCGSLEEALVTFYKTD-CKDVVTWTTMIEGLANYGLGNEALRV 305
+ G L+EA + DV TW ++ +G RV
Sbjct: 656 GRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRV 699
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 111/240 (46%), Gaps = 17/240 (7%)
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252
++ P A L+K M+ + D ++ ACS + + VH +L+ D
Sbjct: 189 IQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDV 248
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
+V+ LI+ +S C ++ +A F ++ D V+W +++ G G EA +++QM +
Sbjct: 249 YVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPER 308
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
I + + VL R GL+ E C+LF M ++ + + L+ + + +
Sbjct: 309 SIIASNSMI--VLFGMR--GLVVEACKLFDEM-----LEKDMVTWSALIACFQQNEMYEE 359
Query: 373 A-EEFI---KIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428
A F+ KI D+ ++ A LSAC ++GK + + +K+G E+Y+ L N
Sbjct: 360 AIRTFVGMHKIGVMVDEVVAVSA-LSACANLLVVNMGKLIHSLSLKIGT---ESYINLQN 415
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 178/465 (38%), Positives = 280/465 (60%), Gaps = 8/465 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H +V K+ D+ V NS++ YG + A+ +FD++P RDV SWN L+S Y
Sbjct: 135 GEKVHGYVVKSGFDA--CVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVG 192
Query: 62 FSDSGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + +F+++ E + AD+ T+V SAC+ L G+ +H Y LE
Sbjct: 193 HRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRY-VDAELEMTTK 251
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NALL MY KC +D+A +FDEMG++ N++ +++GY +D ARE+F+ +
Sbjct: 252 IGNALLDMYCKCGCVDKARAIFDEMGNK-NVICWTSMVSGYASNGSLDEARELFERSPVR 310
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIVLW +M++G V+ +EAL+LF+KM + + PD ++V++L C+ L+ G+ +H
Sbjct: 311 DIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLH 370
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I +N+IT D V TAL+D+Y+KCG +E+AL FY+ +D +WT++I GLA G+ +
Sbjct: 371 GYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTS 430
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL F QME G +P++ TF+ VL AC H GL+ EG + F M Y++QP EH+ CL
Sbjct: 431 KALDFFSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCL 490
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFIS---YKALLSACITYSEFDLGKKVANNMMKLGN 417
+DLL RAGLL +AE ++++P E I Y +LLSAC Y + ++V + ++
Sbjct: 491 IDLLCRAGLLDEAELLLEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVEV 550
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ + LL++ YA W +V RR MKEL RK PG S I++
Sbjct: 551 KDSSVHTLLASVYASANRWEDVTTVRRKMKELGIRKFPGCSSIEV 595
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 165/352 (46%), Gaps = 72/352 (20%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
+VL+LF +L +G+ D TL +F A L K+ G+ VH Y K G + + N+++
Sbjct: 99 KVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSGFDACVC--NSVM 156
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
MY +M+ A ++FDE+ R++VS N+LI+ Y
Sbjct: 157 GMYGALGKMEVAKKVFDEI-PERDVVSWNVLISSY------------------------- 190
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
V ++ E+A+ +F++M E + DE +VS LSACS L N + G +HR++
Sbjct: 191 ------VGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYV-D 243
Query: 246 NNITQDAFVKTALIDMYSKC-------------------------------GSLEEALVT 274
+ + AL+DMY KC GSL+EA
Sbjct: 244 AELEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEAREL 303
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F ++ +D+V WT MI G + L +EAL++F +M+ + ++P+ V++L C +G +
Sbjct: 304 FERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGAL 363
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAED 384
+G L G ++ T++ V LVD+ ++ G + +A E M D
Sbjct: 364 EQGKWLH---GYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERD 412
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 171/454 (37%), Positives = 267/454 (58%), Gaps = 1/454 (0%)
Query: 8 HVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGE 67
H+ + I NS+I +G L +A LFD+M +D+ +W+ L++ + E
Sbjct: 165 HIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEE 224
Query: 68 VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLL 127
+ F + G++ D++ V SACA L ++ GK +H + K+G E +N++NAL+
Sbjct: 225 AIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIY 284
Query: 128 MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRS 187
MY+KC ++ A +LFDE +++S N +I+GY+ LVD A+ +FD + +KD+V W S
Sbjct: 285 MYSKCGDIMVARKLFDE-AYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSS 343
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247
M+ G + +E L LF++M G PDE +VSV+SAC+ L+ L+ G+ VH +I +N
Sbjct: 344 MISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNG 403
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
+T + + T LIDMY KCG +E AL FY K + TW +I GLA GL +L +F
Sbjct: 404 LTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFS 463
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367
M++ + PNE TF+ VL ACRH GL+ EG F M +++QP ++H+ C+VDLL RA
Sbjct: 464 NMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRA 523
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427
G L +AEE + MP ++ ALL AC + + ++G++V +++L +VLLS
Sbjct: 524 GKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLS 583
Query: 428 NFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
N YA +G W +V E R M + + K PG S+I+
Sbjct: 584 NIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIE 617
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 170/390 (43%), Gaps = 65/390 (16%)
Query: 12 TALDSDIYVGNSLIHFYGRMALF--TDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVL 69
T + Y + LI F R +F+ + + WN ++ Y +
Sbjct: 4 TGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAF 63
Query: 70 ILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMY 129
L+K ++ + AD T +L AC+ K VH + K+G + + + N L+ +
Sbjct: 64 TLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCF 123
Query: 130 AKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV---------------- 173
+ C M +A R+F+E S + VS N ++ GYI++ V+ A+ +
Sbjct: 124 SVCSNMTDACRVFNE-SSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMI 182
Query: 174 ---------------FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE 218
FDE+++KD+V W +++ + + EEA+ F M GV DE
Sbjct: 183 VLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEV 242
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL---------- 268
V VS LSAC++L + G+L+H L+ ++ ALI MYSKCG +
Sbjct: 243 VAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEA 302
Query: 269 ---------------------EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
+ A F KDVV+W++MI G A L +E L +F
Sbjct: 303 YLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQ 362
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEG 337
+M+ G KP+E T VSV++AC + +G
Sbjct: 363 EMQMSGFKPDETTLVSVISACARLAALEQG 392
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 140/344 (40%), Gaps = 77/344 (22%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
MGK +H+ K +S I + N+LI+ Y + AR LFD+ D+ SWN+++S Y
Sbjct: 259 MGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYL 318
Query: 60 --------------------------------NDFSDSGEVLILFKQLIFEGIVADKITL 87
ND D E L LF+++ G D+ TL
Sbjct: 319 KCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFD--ETLALFQEMQMSGFKPDETTL 376
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
V + SACARL L GK VH Y + GL + + L+ MY KC ++ AL
Sbjct: 377 VSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETAL-------- 428
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
EVF +++K I W +++ G E +L++F
Sbjct: 429 ------------------------EVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSN 464
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQNNITQDAFVKTALIDMY 262
M VTP+E + VL AC + + G+ ++H +Q N+ ++D+
Sbjct: 465 MKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYG----CMVDLL 520
Query: 263 SKCGSLEEALVTFYKTD-CKDVVTWTTMIEGLANYGLGNEALRV 305
+ G L+EA + DV TW ++ +G RV
Sbjct: 521 GRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRV 564
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 124/266 (46%), Gaps = 17/266 (6%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
+D R +F+ I + + +W M+ ++ P A L+K M+ + D ++ A
Sbjct: 28 IDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQA 87
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
CS + + VH +L+ D +V+ LI+ +S C ++ +A F ++ D V+W
Sbjct: 88 CSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSW 147
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
+++ G G EA +++QM + I + + VL R GL+ E C+LF M
Sbjct: 148 NSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMI--VLFGMR--GLVVEACKLFDEM-- 201
Query: 347 VYRVQPTIEHFVCLVDLLSRAGLLYQA-EEFI---KIMPAEDKFISYKALLSACITYSEF 402
++ + + L+ + + +A F+ KI D+ ++ A LSAC
Sbjct: 202 ---LEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSA-LSACANLLVV 257
Query: 403 DLGKKVANNMMKLGNQSHEAYVLLSN 428
++GK + + +K+G E+Y+ L N
Sbjct: 258 NMGKLIHSLSLKIGT---ESYINLQN 280
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 167/463 (36%), Positives = 273/463 (58%), Gaps = 2/463 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH K+A+ SD++V NSLIH Y A +F + +DV SWN++++ +
Sbjct: 149 LGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFV 208
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L LFK++ E + A +T+V + SACA++ L +G+ V Y + + L
Sbjct: 209 QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLT 268
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NA+L MY KC +++A RLFD M + N V+ +++GY E + AREV + + K
Sbjct: 269 LANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAISEDYEAAREVLNSMPQK 327
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
DIV W +++ + +P EAL +F ++ + + + ++ +VS LSAC+ + L+ GR +
Sbjct: 328 DIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWI 387
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I ++ I + V +ALI MYSKCG LE++ F + +DV W+ MI GLA +G G
Sbjct: 388 HSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCG 447
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
NEA+ +FY+M+ +KPN TF +V AC H+GL+ E LF +M Y + P +H+ C
Sbjct: 448 NEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYAC 507
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VD+L R+G L +A +FI+ MP + ALL AC ++ +L + +++L ++
Sbjct: 508 IVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRN 567
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A+VLLSN YA G W V+E R++M+ +K+PG S I++
Sbjct: 568 DGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEI 610
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 190/420 (45%), Gaps = 68/420 (16%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG--RMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K H H+ +T SD Y + L A AR +FD++P + +WNTL+ Y
Sbjct: 47 KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYA 106
Query: 61 DFSDSGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
D + F ++ E +K T L A A + L G+++H A K + +
Sbjct: 107 SGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDV 166
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ N+L+ Y C ++D A ++F + +++VS N +ING+
Sbjct: 167 FVANSLIHCYFSCGDLDSACKVFTTI-KEKDVVSWNSMINGF------------------ 207
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
V+ P++ALELFKKM E V MV VLSAC+ + NL++GR V
Sbjct: 208 -------------VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQV 254
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA----- 294
+I +N + + + A++DMY+KCGS+E+A F + KD VTWTTM++G A
Sbjct: 255 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDY 314
Query: 295 --------------------------NYGLGNEALRVFYQME-RKGIKPNEATFVSVLAA 327
G NEAL VF++++ +K +K N+ T VS L+A
Sbjct: 315 EAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSA 374
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C G + G + + + ++ L+ + S+ G L ++ E + D F+
Sbjct: 375 CAQVGALELGRWIHSYIKK-HGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFV 433
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 120/247 (48%), Gaps = 3/247 (1%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLS 225
++ AR+VFDEI + W +++ P ++ F M+ E P++ ++
Sbjct: 80 LEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIK 139
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
A + +S+L G+ +H +++ + D FV +LI Y CG L+ A F KDVV+
Sbjct: 140 AAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVS 199
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
W +MI G G ++AL +F +ME + +K + T V VL+AC + G Q+ +
Sbjct: 200 WNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIE 259
Query: 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
RV + ++D+ ++ G + A+ M +D +++ +L +++
Sbjct: 260 E-NRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAISEDYEAA 317
Query: 406 KKVANNM 412
++V N+M
Sbjct: 318 REVLNSM 324
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 167/461 (36%), Positives = 263/461 (57%), Gaps = 1/461 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H K DSD +V L+ Y +AR++FDKM RDV +W+ ++ Y
Sbjct: 141 GLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQ 200
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L+LF+++ + D++ L + SAC R L YGK +H + + + ++
Sbjct: 201 SGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHL 260
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
++AL+ MYA C MD AL LF++M + +N+V+ ++ GY + ++ AR VF+++V KD
Sbjct: 261 QSALVTMYASCGSMDLALNLFEKM-TPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKD 319
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ G ++ P+EAL LF +M G+ PD+ M+SV++AC+ L L + +H
Sbjct: 320 LVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHL 379
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F+ +N + ALI+MY+KCGSLE A F K K+V++WT MI A +G
Sbjct: 380 FVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGS 439
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
ALR F+QME + I+PN TFV VL AC H+GL+ EG ++F M + + P H+ C+V
Sbjct: 440 ALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMV 499
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL RA LL +A E ++ MP I + +L++AC + E +LG+ A +++L
Sbjct: 500 DLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDG 559
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A+V LSN YA W +V + R+ MK K+ G S +L
Sbjct: 560 AHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFEL 600
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 114/427 (26%), Positives = 200/427 (46%), Gaps = 70/427 (16%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD-ARVLFDKMPFRDVGSWNTLMSIYND 61
K +HA + ++ LD + L+ ++ D A +F+ +P + N + +
Sbjct: 40 KQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSR 99
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + L++++++ +G+ D+ + L A +R++ L G +H A K+G + +
Sbjct: 100 SEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFV 159
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ L+ MYA C + EA +FD+M R++V+ +I+I+GY L +
Sbjct: 160 QTGLVRMYAACGRIAEARLMFDKM-FHRDVVTWSIMIDGYCQSGLFN------------- 205
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+AL LF++M + V PDE ++ +VLSAC NL YG+++H
Sbjct: 206 ------------------DALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHD 247
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--------------------- 280
FI++NNI D +++AL+ MY+ CGS++ AL F K
Sbjct: 248 FIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIEN 307
Query: 281 ----------KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
KD+V W+ MI G A EAL +F +M+ GIKP++ T +SV+ AC H
Sbjct: 308 ARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAH 367
Query: 331 SGLITEG--CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
G + + LF G P L+++ ++ G L +A MP ++ IS
Sbjct: 368 LGALDQAKWIHLFVDKNGFGGALPINN---ALIEMYAKCGSLERARRIFDKMPRKN-VIS 423
Query: 389 YKALLSA 395
+ ++SA
Sbjct: 424 WTCMISA 430
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/464 (35%), Positives = 273/464 (58%), Gaps = 3/464 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V K LD D++VGN+L+ YG A AR++FDKM RDV SW+T++ +
Sbjct: 142 LGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLS 201
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYM- 118
+ L L +++ F + ++ +V + + A + GK +H Y + E+M
Sbjct: 202 RNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMG 261
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ ALL MYAKC + A +LF+ + +++ +VS +I G I ++ AR +FD
Sbjct: 262 VPTTTALLDMYAKCGHLGLARQLFNGL-TQKTVVSWTAMIAGCIRSNRLEEARALFDSTQ 320
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++D+++W +M+ +A ++A LF +M GV P + +VS+LS C+ L G+
Sbjct: 321 NRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKW 380
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH +I + + D + TAL+DMY+KCG + A F + +D+ W +I G A +G
Sbjct: 381 VHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGY 440
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G EAL +F +MER+G+KPN+ TF+ +L AC H+GL+TEG +LF +M + + P IEH+
Sbjct: 441 GEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYG 500
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDLL RAGLL +A E IK MP + I + AL++AC + LG+ A ++++ +
Sbjct: 501 CMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPE 560
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ VL+SN YA W++ A R+ MK + +K+PG+S+I++
Sbjct: 561 NCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEV 604
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 158/370 (42%), Gaps = 86/370 (23%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIYN 60
K +HAH+ KT HF+ + ++ + P WN +++ Y
Sbjct: 60 KQIHAHIIKT-------------HFHHAL------QIPLNDFPSGLSPSAQWNFVITSYT 100
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L ++ QL D + AC ++ GK +H + K GL+ +
Sbjct: 101 KRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVF 160
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+LMY +C ++ A +FD+M +++
Sbjct: 161 VGNALMLMYGECACVEYARLVFDKM--------------------------------MER 188
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ + K+ + ALEL ++M V P E MVS+++ + +N++ G+ +H
Sbjct: 189 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 248
Query: 241 RFILQNNITQDAFVK--TALIDMYSKCG-------------------------------S 267
++++N+ + V TAL+DMY+KCG
Sbjct: 249 AYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNR 308
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
LEEA F T +DV+ WT M+ A ++A +F QM G++P + T VS+L+
Sbjct: 309 LEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSL 368
Query: 328 CRHSGLITEG 337
C +G + G
Sbjct: 369 CAVAGALDLG 378
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 106/223 (47%), Gaps = 8/223 (3%)
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W ++ K QP AL ++ ++ D + SVL AC +S Q G+ +H F+L
Sbjct: 92 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ + +D FV AL+ MY +C +E A + F K +DVV+W+TMI L+ + AL
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEG----CQLFRRMGGVYRVQPTIEHFVCL 360
+ +M ++P+E VS++ + + G + R + PT L
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTT---TAL 268
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
+D+ ++ G L A + + + +S+ A+++ CI + +
Sbjct: 269 LDMYAKCGHLGLARQLFNGL-TQKTVVSWTAMIAGCIRSNRLE 310
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 162/446 (36%), Positives = 264/446 (59%), Gaps = 3/446 (0%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ ++ N +++ Y + L AR LF+++P +DV SW T++ Y GE L +++
Sbjct: 247 ERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRS 306
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
++ G+ +++ +V L SAC R + G+ H + G + ++ ++ YA C E
Sbjct: 307 MLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGE 366
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
++ A F E+GS+ ++ S N LI+G++ +++ AR++FDE+ ++D+ W SM+ G +
Sbjct: 367 INLAFLQF-ELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQ 425
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+QP+ AL+LF +M+ GV P+E MVSV SA ++L L GR H +IL N+I + +
Sbjct: 426 NEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNL 485
Query: 255 KTALIDMYSKCGSLEEALVTFYKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
ALIDMY+KCGS+ AL FY+ V W +I GLA +G N +L++F Q++R
Sbjct: 486 NAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRV 545
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
IKPN TF+ VL+AC H+GL+ G + F+ M +Y ++P I+H+ C++DLL RAG L +
Sbjct: 546 RIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKE 605
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432
A E I+ MP + + + LL+AC T+ ++G++ A N+ KL VLLSN YA
Sbjct: 606 AAEMIRKMPMKADVVIWGTLLAACRTHGNVEIGERAAENLAKLDISHGAGRVLLSNIYAD 665
Query: 433 EGHWTEVAEARRNMKELQTRKKPGNS 458
G W + RR M+ + +K PG S
Sbjct: 666 AGRWDDAFLVRRAMQSQRMKKSPGCS 691
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 141/548 (25%), Positives = 245/548 (44%), Gaps = 106/548 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD------------------- 42
G+ +H+ V K+ L S+I+V NSLI FY + L ++AR LFD
Sbjct: 71 GQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDTCSVLDPVSCNIMLAGYVK 130
Query: 43 ------------KMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
KMP + S+ T++ + E + +FK + F G++ +++TL +
Sbjct: 131 SGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASV 190
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SA + + + + +H + K+GLE + + L+ MY C + A LFDE+ RN
Sbjct: 191 ISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCSSLGNARVLFDEI-PERN 249
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+V+ N+++NGY LVDLAR++F+ I KD+V W +++ G V+ ++ EAL +++ M+
Sbjct: 250 VVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLR 309
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS--- 267
GV P+E ++V ++SAC + G+ H I++ F++ +I Y+ CG
Sbjct: 310 TGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINL 369
Query: 268 ----------------------------LEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
+E+A F + +DV +W++MI G +
Sbjct: 370 AFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQP 429
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG---------------------- 337
+ AL++F++M G++PNE T VSV +A G + EG
Sbjct: 430 DLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAAL 489
Query: 338 CQLFRRMGGV-------YRVQPTIEH------FVCLVDLLSRAGL---LYQAEEFIKIMP 381
++ + G + Y +Q + +C + + A + L+ + ++I P
Sbjct: 490 IDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKP 549
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN--QSHEAYVLLSNFYALEGHWTEV 439
FI +LSAC D G+K M L N + + Y + + G E
Sbjct: 550 NSITFI---GVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEA 606
Query: 440 AEARRNMK 447
AE R M
Sbjct: 607 AEMIRKMP 614
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 117/426 (27%), Positives = 189/426 (44%), Gaps = 77/426 (18%)
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
++TLV +C+ L L G+ +H K GL + ++N+L+ Y KC+ + A LFD
Sbjct: 52 ELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFD 111
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
S + VS NI++ GY+ +D AR +F+++ K V + +M+ G + EA+
Sbjct: 112 TC-SVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIG 170
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
+FK M GV P+E + SV+SA S + + R++H + + V T L+ MY
Sbjct: 171 VFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYC 230
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN----------------------- 300
C SL A V F + ++VVTW M+ G + GL +
Sbjct: 231 VCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDG 290
Query: 301 --------EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR--- 349
EALR++ M R G+ PNE V +++AC + ++EG Q G + R
Sbjct: 291 YVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFH---GIIVRTGF 347
Query: 350 -----VQPTIEHF--VC-----------------------LVDLLSRAGLLYQAEEFIKI 379
+Q TI HF C L+ R G++ QA +
Sbjct: 348 DCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDE 407
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA-------L 432
MP D F S+ +++S + DL ++ + M+ G Q +E ++S F A +
Sbjct: 408 MPERDVF-SWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNE-ITMVSVFSAIATLGTLM 465
Query: 433 EGHWTE 438
EG W
Sbjct: 466 EGRWAH 471
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 170/460 (36%), Positives = 266/460 (57%), Gaps = 1/460 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H H+TK L SDI+V NSLIH Y AR +FD+M +DV SWN+L+ Y+
Sbjct: 106 GEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQ 165
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ ++L LFK + EG+ ADK+T++ + SAC RL + Y +E + +
Sbjct: 166 CNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYL 225
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L+ + + ++ A ++F M RNIV++N +I Y + + AR++FD+I KD
Sbjct: 226 GNTLVDYFGRRGQLQSAEKVFFNM-KVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKD 284
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W SM+ G +A +ALE+F++M V PD V+ SV+S+C+ L L G+ VH
Sbjct: 285 LISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHE 344
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ +NNI D ++ +LIDMY KCGS +EAL F + KD ++W ++I GLAN G E
Sbjct: 345 YVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKE 404
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
+L +F M +G +PN TF+ VL AC ++ L+ EG F M +Y ++P ++H+ C+V
Sbjct: 405 SLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVV 464
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +A FI MP + + ++ LL +C T+ + + + V + +L +
Sbjct: 465 DLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSG 524
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
Y LLSN YA W+E R+ M + RK PG S ++
Sbjct: 525 NYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 564
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/416 (24%), Positives = 180/416 (43%), Gaps = 69/416 (16%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL-FTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LHA+ + L + Y + ++ Y + A +FD++ WN L+
Sbjct: 5 KRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQ 64
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + +K+ G+V D +T + ACAR+ L+ G+ +H + TK+GL + +
Sbjct: 65 SDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFV 124
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ +YA C + A +FDEM V KD
Sbjct: 125 SNSLIHLYAACGNLCYARSVFDEM--------------------------------VVKD 152
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W S++ G + + ++ L LFK M +EGV D+ M+ V+SAC+ L + + R
Sbjct: 153 VVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVR 212
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--------------------- 280
+I I D ++ L+D + + G L+ A F+
Sbjct: 213 YIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVS 272
Query: 281 ----------KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
KD+++W++MI G + ++AL +F QM+R +KP+ SV+++C H
Sbjct: 273 ARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAH 332
Query: 331 SGLITEG--CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
G + G + R + + +E+ L+D+ + G +A + K M +D
Sbjct: 333 LGALDLGKWVHEYVRRNNI-KADTIMEN--SLIDMYMKCGSAKEALQVFKEMKEKD 385
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 7/292 (2%)
Query: 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS 228
A +VFD+I LW ++ G ++ P +A+ +KK G+ PD +L AC+
Sbjct: 39 FAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACA 98
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
++ L G +H I + + D FV +LI +Y+ CG+L A F + KDVV+W +
Sbjct: 99 RINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNS 158
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
+I G + + L +F M+ +G+K ++ T + V++AC G + + R + Y
Sbjct: 159 LICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIED-Y 217
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
++ + LVD R G L AE+ M + ++ A+++A + +K+
Sbjct: 218 CIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRN-IVTMNAMIAAYAKGQDIVSARKI 276
Query: 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
+ + K S + + + Y+ H+++ E R M+ + + KP +I
Sbjct: 277 FDQIPKKDLISWSSMI---SGYSQANHFSDALEIFRQMQ--RAKVKPDAIVI 323
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 102/218 (46%), Gaps = 6/218 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H +V + + +D + NSLI Y + +A +F +M +D SWN+++
Sbjct: 338 LGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLA 397
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYM 118
+ E L LF+ ++ EG + +T + + ACA + + G H + K LE
Sbjct: 398 NNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLD-HFESMKRLYSLEPQ 456
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI---NGYIDMELVDLAREVFD 175
+ ++ + + ++++ALR EM + V IL+ N + D+ + ++ + +
Sbjct: 457 MKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLN 516
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
E+ + + + + A + EA+ + + M D V
Sbjct: 517 ELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDV 554
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 170/466 (36%), Positives = 273/466 (58%), Gaps = 5/466 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSI 58
+GK +H KT+ D++V NSLIHFY A ++F+ + +D+ SWN++++
Sbjct: 258 VGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTG 317
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ + L LF+++ EG+ + +T+V + SACA+ L G+ V Y + +
Sbjct: 318 FVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMN 377
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
LN+ NA + M+ KC E++ A LFD M +R++VS +I+GY M +AR++FD +
Sbjct: 378 LNVCNATIDMFVKCGEVEIARGLFDNM-EKRDVVSWTTIIDGYAKMSEHGIARDIFDSMP 436
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFK--KMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
KDI W ++ G ++ +P+EAL +F+ ++ G PD+ ++S LSAC+ L + G
Sbjct: 437 RKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIG 496
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+H +I + I + + T+LIDMYSK G +E+A+ F+ KDV W+ MI GLA +
Sbjct: 497 EWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMH 556
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G G A+ +F M+ +KPN TF ++L AC HSGL+ EG +LF M VY V P +H
Sbjct: 557 GRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKH 616
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VD+L RAG L +A +FI+ MP + ALL AC + +L +K + ++++
Sbjct: 617 YSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIE 676
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+H AYVLLSN YA G W V+E R+ M++ +K+ G S I++
Sbjct: 677 PGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEI 722
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 124/485 (25%), Positives = 215/485 (44%), Gaps = 72/485 (14%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLI--HFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K +HA + +T D Y + L + + AR +FD++P ++ SWN L+
Sbjct: 156 KQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALA 215
Query: 61 DFSDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
SD + +++F +++ + +K T +L A A GK VH A K +
Sbjct: 216 TSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDV 275
Query: 120 NMENALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ N+L+ YA C +D A +F+ + G+ ++IVS N ++ G+
Sbjct: 276 FVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGF----------------- 318
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
V+ P++AL+LF++M +EGV P+ MVSV+SAC+ NL GR
Sbjct: 319 --------------VQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRK 364
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA---- 294
V +I +N + + V A IDM+ KCG +E A F + +DVV+WTT+I+G A
Sbjct: 365 VCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSE 424
Query: 295 ---------------------------NYGLGNEALRVF--YQMERKGIKPNEATFVSVL 325
G EAL +F Q+ + G +P++ T +S L
Sbjct: 425 HGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTL 484
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+AC G + G + R+Q L+D+ S++G + +A E + +D
Sbjct: 485 SACAQLGAMDIG-EWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDV 543
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
F+ + A+++ + + ++ +M + Q V +N H V E +R
Sbjct: 544 FV-WSAMIAGLAMHGRGEAAIELFLDMQE--TQVKPNSVTFTNLLCACSHSGLVDEGKRL 600
Query: 446 MKELQ 450
E++
Sbjct: 601 FDEME 605
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 140/294 (47%), Gaps = 12/294 (4%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI-DEGVTPDEEVMVSVLS 225
+D AR+VFD+I ++ W ++ + P +++ +F +M+ D P++ ++
Sbjct: 189 LDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIK 248
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF--YKTDCKDV 283
A + G+ VH ++ + D FV +LI Y+ CG L+ A + F + + KD+
Sbjct: 249 AVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDI 308
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
V+W +M+ G G ++AL +F +M +G+ PN T VSV++AC + +T G ++
Sbjct: 309 VSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDY 368
Query: 344 MGGVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
+ R + + VC +D+ + G + A M D +S+ ++ SE
Sbjct: 369 ---IDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRD-VVSWTTIIDGYAKMSE 424
Query: 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKP 455
+ + + ++M + + A+ +L + Y G E R ++ ++ +P
Sbjct: 425 HGIARDIFDSMPR---KDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARP 475
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/460 (36%), Positives = 267/460 (58%), Gaps = 1/460 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+HV K DI+V NSLIH Y AR +FD+M +DV SWN+L+ Y+
Sbjct: 429 GEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQ 488
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ EVL LF+ + E + ADK+T+V + SAC L + Y + +E + +
Sbjct: 489 RNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYL 548
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L+ Y + ++ A ++F +M +N V+LN +I+ Y + A+++FD+I +KD
Sbjct: 549 GNTLIDYYCRIGQLQSAEKVFSQM-KDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKD 607
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W SM+ +A ++LELF++M V PD V+ SVLSAC+ L L G+ +H
Sbjct: 608 LISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHD 667
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ +NNI D ++ +LIDM++KCG ++EAL F + + KD ++W ++I GLAN G +E
Sbjct: 668 YVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDE 727
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +FY M +G +PNE TF+ VL AC + L+ EG F RM V+ ++P ++H+ C+V
Sbjct: 728 ALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVV 787
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
+LSRAG L +A+ FI MP + ++ LL AC T+ + + + +L +
Sbjct: 788 GILSRAGQLEKAKNFINEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSG 847
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
Y+LLSN YA W++ R+ M + RK P S++D
Sbjct: 848 DYMLLSNIYASADRWSDALNVRQWMADTAVRKSPACSVVD 887
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 193/318 (60%), Gaps = 1/318 (0%)
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+N+VS N++I G+ ++ AR +FD++ +++V W ++ G +A EA+ LF+ M
Sbjct: 4 KNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHM 63
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+ G++P E +++V+ A S+L + G ++H + ++ I DA V +LID+Y+K GS+
Sbjct: 64 MAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSV 123
Query: 269 EEALVTFYKT-DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+ +L F + D +++V+WT++I G A +GL EAL +F +M R GI+PN TF+SV+ A
Sbjct: 124 QNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINA 183
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C H GL+ +G F+ M Y + P I+HF C++D+L RAG L +AE+ I+ +P E I
Sbjct: 184 CSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVI 243
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
++ LL C Y E ++GK+ + L +S + +LSN G +++ +AR+ +
Sbjct: 244 VWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLD 303
Query: 448 ELQTRKKPGNSIIDLKHY 465
E + K PG +++ + +
Sbjct: 304 ERKIVKVPGLALVVTRSF 321
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/425 (24%), Positives = 191/425 (44%), Gaps = 70/425 (16%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG-RMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LHAH+ + L + Y + +I Y + + A +F+++ WNTL+
Sbjct: 328 KKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQ 387
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ ++ +K+ +G+ D +T + ACA+ G+ +H + K+G + +
Sbjct: 388 SDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFV 447
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ +YA C ++ A +FDEM +++VS N LI GY R F E+
Sbjct: 448 SNSLIHLYAACGDLVCARSIFDEM-LVKDVVSWNSLIGGYSQ-------RNRFKEV---- 495
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
L LF+ M E V D+ MV V+SAC+ L + + R
Sbjct: 496 --------------------LALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVR 535
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEA---------------------------LVT 274
+I +N+I D ++ LID Y + G L+ A LV+
Sbjct: 536 YIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVS 595
Query: 275 ----FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
F + KD+++W++MI + +++L +F QM+R +KP+ SVL+AC H
Sbjct: 596 AKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAH 655
Query: 331 SGLITEGCQL--FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
G + G + + R + + +E+ L+D+ ++ G + +A + M +D +S
Sbjct: 656 LGALDLGKWIHDYVRRNNI-KTDTIMEN--SLIDMFAKCGCMQEALQVFTEMEEKDT-LS 711
Query: 389 YKALL 393
+ +++
Sbjct: 712 WNSII 716
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 133/281 (47%), Gaps = 36/281 (12%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR+LFD+MP R+V SW L+ Y E + LF+ ++ GI +IT++ + A +
Sbjct: 25 ARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVPAISN 84
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
L + G+ +H Y K G+ + N+L+ +YAK + +L++FDEM RRN+VS
Sbjct: 85 LGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTS 144
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
+I+G+ MHG EALELF +M G+ P+
Sbjct: 145 IISGF--------------------------AMHGL-----SVEALELFAEMRRAGIRPN 173
Query: 217 EEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
+SV++ACS ++ G + + NI + +IDM + G L EA
Sbjct: 174 RITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQII 233
Query: 276 YKTDCK-DVVTWTTMIEGLANYG---LGNEALRVFYQMERK 312
+ +V+ W ++ + YG +G A+++ +ER+
Sbjct: 234 EGLPVEVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERE 274
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 141/294 (47%), Gaps = 11/294 (3%)
Query: 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS 228
A +VF++I LW +++ G ++ P++A+ +KK ++G+ PD VL AC+
Sbjct: 362 FAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACA 421
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
+ G +H +++ D FV +LI +Y+ CG L A F + KDVV+W +
Sbjct: 422 KTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNS 481
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
+I G + E L +F M+ + ++ ++ T V V++AC H G + + R +
Sbjct: 482 LIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRY---IE 538
Query: 349 RVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406
R ++ ++ L+D R G L AE+ M ++ ++ A++ A K
Sbjct: 539 RNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNT-VTLNAMIHAYAKGGNLVSAK 597
Query: 407 KVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
K+ + ++ N+ ++ + Y+ H+++ E R M+ + + KP +I
Sbjct: 598 KIFD---QIPNKDLISWSSMICAYSQASHFSDSLELFRQMQ--RAKVKPDAVVI 646
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 97/428 (22%), Positives = 186/428 (43%), Gaps = 42/428 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM-PFRDVGSWNTLMSIY 59
MG+ LH + K + SD VGNSLI Y ++ ++ +FD+M R++ SW +++S +
Sbjct: 90 MGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGF 149
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
S E L LF ++ GI ++IT + + +AC+ H G A + Y
Sbjct: 150 AMHGLSVEALELFAEMRRAGIRPNRITFLSVINACS-----HGGLVEQGLAFFKSMVYEY 204
Query: 120 NME------NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
N++ ++ M + + EA ++ + + N++ IL+ V++ +
Sbjct: 205 NIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVEMGKRA 264
Query: 174 FDEIVD------KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV---- 223
I D D + ++++ + E+A +L DE +V V
Sbjct: 265 IKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLL----------DERKIVKVPGLA 314
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS-KCGSLEEALVTFYKTDCKD 282
L S ++ + +H ++ + + + + +I Y+ + L A F + +
Sbjct: 315 LVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPT 374
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
W T++ GLA +A+ + + + KG+KP+ TF VL AC + EG Q+
Sbjct: 375 TFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHS 434
Query: 343 RMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYS 400
V ++ ++ FV L+ L + G L A M +D +S+ +L+ YS
Sbjct: 435 H---VIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKD-VVSWNSLIGG---YS 487
Query: 401 EFDLGKKV 408
+ + K+V
Sbjct: 488 QRNRFKEV 495
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM--SI 58
+GK +H +V + + +D + NSLI + + +A +F +M +D SWN+++
Sbjct: 661 LGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLA 720
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-------KTVHCYAT 111
N F D E L +F ++ EG +++T + + ACA + G KTVH
Sbjct: 721 NNGFED--EALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVH---- 774
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
LE + ++ + ++ ++++A +EM + V IL+
Sbjct: 775 --NLEPQMKHYGCVVGILSRAGQLEKAKNFINEMPLAPDPVVWRILLGA 821
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 176/470 (37%), Positives = 262/470 (55%), Gaps = 7/470 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
M K +H V SD+Y+GN+LI Y R AR +F++MP RDV SWN+L+S YN
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192
Query: 61 DFSDSGEVLILFKQLI--FEGIV----ADKITLVILFSACARLEKLHYGKTVHCYATKVG 114
E L ++ Q I F +V D +T+ + AC L L +GK VH Y G
Sbjct: 193 ANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSG 252
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF 174
E N L+ MYAKC + + +F M + + VS N +IN YI + + +VF
Sbjct: 253 YECDTTASNILINMYAKCGNLLASQEVFSGMKCKDS-VSWNSMINVYIQNGKMGDSLKVF 311
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
+ + +DI+ W +++ CV ++ L + +M EGVTPD M+S+L CS L+ +
Sbjct: 312 ENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKR 371
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
G+ +H I + + D V LI+MYSKCGSL + F KDVVTWT +I
Sbjct: 372 QGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACG 431
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
YG G +A+R F +ME GI P+ FV+++ AC HSGL+ EG F RM Y+++P I
Sbjct: 432 MYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRI 491
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
EH+ C+VDLLSR+ LL +AE+FI MP + + ALLSAC + ++ ++V+ +++
Sbjct: 492 EHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIE 551
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
L YVL+SN YA G W +V R+++K +K PG S +++++
Sbjct: 552 LNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQN 601
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 114/442 (25%), Positives = 193/442 (43%), Gaps = 77/442 (17%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD-KMPFRDVGSWNTLMSIYNDFS 63
LH+ + L + LI Y T + +F P +V WN+++
Sbjct: 35 LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNG 94
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
E L L+ + + D T + +ACA L K++H +G L + N
Sbjct: 95 LFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGN 154
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ MY + ++D+A ++F+EM R++VS N LI+GY + A E++
Sbjct: 155 ALIDMYCRFNDLDKARKVFEEM-PLRDVVSWNSLISGYNANGYWNEALEIY--------- 204
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
++++LF +M+++ PD + S+L AC L +L++G+ VH ++
Sbjct: 205 ---------------YQSIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYM 248
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ + D LI+MY+KCG+L + F CKD V+W +MI G ++L
Sbjct: 249 ITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSL 308
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR---VQPTIEHF--- 357
+VF M+ + I T+ +++A+C HS E C L RM R V P +
Sbjct: 309 KVFENMKARDI----ITWNTIIASCVHS----EDCNLGLRMISRMRTEGVTPDMATMLSI 360
Query: 358 --VC------------------------------LVDLLSRAGLLYQAEEFIKIMPAEDK 385
VC L+++ S+ G L + + K+M +D
Sbjct: 361 LPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKD- 419
Query: 386 FISYKALLSACITYSEFDLGKK 407
+++ AL+SAC Y E GKK
Sbjct: 420 VVTWTALISACGMYGE---GKK 438
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 10/239 (4%)
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ LW S++ EAL L+ + + PD SV++AC+ L + + + +H
Sbjct: 79 NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+L D ++ ALIDMY + L++A F + +DVV+W ++I G G N
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 198
Query: 301 EALRVFYQ-----MER-KGIKPNEATFVSVLAACRHSGLITEGCQLFRRM-GGVYRVQPT 353
EAL ++YQ ME KP+ T S+L AC H G + G + M Y T
Sbjct: 199 EALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT 258
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
+ L+++ ++ G L ++E M +D +S+ ++++ I + KV NM
Sbjct: 259 ASNI--LINMYAKCGNLLASQEVFSGMKCKDS-VSWNSMINVYIQNGKMGDSLKVFENM 314
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 173/461 (37%), Positives = 265/461 (57%), Gaps = 1/461 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK L H K DS+++V + IH + L AR +FD +V +WN ++S YN
Sbjct: 126 GKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNR 185
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ +LF ++ G+ + +TLV++ SAC++L+ L GK ++ Y +E L +
Sbjct: 186 VKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLIL 245
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
EN L+ M+A C EMDEA +FD M R+++S ++ G+ ++ +DLAR+ FD+I ++D
Sbjct: 246 ENVLIDMFAACGEMDEAQSVFDNM-KNRDVISWTSIVTGFANIGQIDLARKYFDQIPERD 304
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G ++ + EAL LF++M V PDE MVS+L+AC+ L L+ G V
Sbjct: 305 YVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKT 364
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +N+I D FV ALIDMY KCG++ +A F + KD TWT MI GLA G G E
Sbjct: 365 YIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEE 424
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M I P+E T++ VL AC H+G++ +G F M + ++P + H+ C+V
Sbjct: 425 ALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMV 484
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +A E I MP + I + +LL AC + L + A +++L ++
Sbjct: 485 DLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGA 544
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL N YA W + + R+ M E +K PG S+++L
Sbjct: 545 VYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMEL 585
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 112/424 (26%), Positives = 197/424 (46%), Gaps = 80/424 (18%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF-----YGRMALFTDARVLFDKMPFRDVGSWNTLMS 57
K +H+H K L SD +I F G+M AR +FD +P + WNT++
Sbjct: 24 KQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIY---ARQVFDAIPQPTLFIWNTMIK 80
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y+ + + ++ ++ I D+ T L R L YGK + +A K G +
Sbjct: 81 GYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDS 140
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L ++ A + M++ C+ +D A ++FD MG +V+ NI+++GY
Sbjct: 141 NLFVQKAFIHMFSLCRLVDLARKVFD-MGDAWEVVTWNIMLSGY---------------- 183
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+ KQ +++ LF +M GV+P+ +V +LSACS L +L+ G+
Sbjct: 184 ---------------NRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGK 228
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
++++I + ++ ++ LIDM++ CG ++EA F +DV++WT+++ G AN G
Sbjct: 229 HIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIG 288
Query: 298 LGN-------------------------------EALRVFYQMERKGIKPNEATFVSVLA 326
+ EAL +F +M+ +KP+E T VS+L
Sbjct: 289 QIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILT 348
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEH--FV--CLVDLLSRAGLLYQAEEFIKIMPA 382
AC H G + G Y + +I++ FV L+D+ + G + +A++ K M
Sbjct: 349 ACAHLGALELG-----EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHH 403
Query: 383 EDKF 386
+DKF
Sbjct: 404 KDKF 407
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 117/239 (48%), Gaps = 4/239 (1%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
AR+VFD I + +W +M+ G + P+ + ++ M+ + PD +L +
Sbjct: 60 ARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTR 119
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
LQYG+++ +++ + FV+ A I M+S C ++ A F D +VVTW M
Sbjct: 120 NMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIM 179
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM-GGVY 348
+ G ++ +F +ME++G+ PN T V +L+AC + G +++ + GG+
Sbjct: 180 LSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIV 239
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
+E+ L+D+ + G + +A+ M D IS+ ++++ + DL +K
Sbjct: 240 ERNLILENV--LIDMFAACGEMDEAQSVFDNMKNRD-VISWTSIVTGFANIGQIDLARK 295
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/226 (19%), Positives = 104/226 (46%), Gaps = 6/226 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + ++ K ++ +D +VGN+LI Y + A+ +F +M +D +W ++
Sbjct: 358 LGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLA 417
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT-KVGLEYML 119
E L +F +I I D+IT + + AC + G++ T + G++ +
Sbjct: 418 INGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNV 477
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAREVFDE 176
++ + + ++EA + M + N + L+ + +++L ++A + E
Sbjct: 478 THYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILE 537
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV--TPDEEVM 220
+ ++ ++ + + K+ E ++ K M++ G+ TP +M
Sbjct: 538 LEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLM 583
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 170/460 (36%), Positives = 266/460 (57%), Gaps = 1/460 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H H+TK L SDI+V NSLIH Y AR +FD+M +DV SWN+L+ Y+
Sbjct: 571 GEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQ 630
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ ++L LFK + EG+ ADK+T++ + SAC RL + Y +E + +
Sbjct: 631 CNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYL 690
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L+ + + ++ A ++F M RNIV++N +I Y + + AR++FD+I KD
Sbjct: 691 GNTLVDYFGRRGQLQSAEKVFFNM-KVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKD 749
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W SM+ G +A +ALE+F++M V PD V+ SV+S+C+ L L G+ VH
Sbjct: 750 LISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHE 809
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ +NNI D ++ +LIDMY KCGS +EAL F + KD ++W ++I GLAN G E
Sbjct: 810 YVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKE 869
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
+L +F M +G +PN TF+ VL AC ++ L+ EG F M +Y ++P ++H+ C+V
Sbjct: 870 SLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVV 929
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +A FI MP + + ++ LL +C T+ + + + V + +L +
Sbjct: 930 DLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSG 989
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
Y LLSN YA W+E R+ M + RK PG S ++
Sbjct: 990 NYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 1029
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 214/393 (54%), Gaps = 7/393 (1%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
A +FD+ P W+ L+ Y+ + L LF+ + D ACA
Sbjct: 47 AHQVFDRRP----TPWHALLKAYSHGPHPQDALQLFRHARWHA-ADDTYAFTFALKACAG 101
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
L +H + G E+ + AL+ +Y C + ++ F+EM +N VS N+
Sbjct: 102 LGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEM-PVKNAVSWNV 160
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
+I G+ V+ AR +F+ + +++V W M+ G +A +P EA+ LF++M+ EG++P
Sbjct: 161 VITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPS 220
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
E +++V+ A S++ + G +H + + + D V +LID+Y+K GS++ +L F
Sbjct: 221 EITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFD 280
Query: 277 KT-DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335
+ D +++V+WT++I G A +GL +A+ +F M R GI+PN TF+SVL AC H GL+
Sbjct: 281 EMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVE 340
Query: 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+G F+ M Y + P ++HF C++D+L RAG L +AE+ I+ P E ++ LL
Sbjct: 341 QGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGC 400
Query: 396 CITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428
C Y E ++G++ ++ L + +V+LSN
Sbjct: 401 CSKYGEVEMGERTMKKILALEREFGGDFVVLSN 433
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 160/367 (43%), Gaps = 64/367 (17%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL-FTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LHA+ + L + Y + ++ Y + A +FD++ WN L+
Sbjct: 470 KRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQ 529
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + +K+ G+V D +T + ACAR+ L+ G+ +H + TK+GL + +
Sbjct: 530 SDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFV 589
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ +YA C + A +FDEM V KD
Sbjct: 590 SNSLIHLYAACGNLCYARSVFDEM--------------------------------VVKD 617
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W S++ G + + ++ L LFK M +EGV D+ M+ V+SAC+ L + + R
Sbjct: 618 VVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVR 677
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--------------------- 280
+I I D ++ L+D + + G L+ A F+
Sbjct: 678 YIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVS 737
Query: 281 ----------KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
KD+++W++MI G + ++AL +F QM+R +KP+ SV+++C H
Sbjct: 738 ARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAH 797
Query: 331 SGLITEG 337
G + G
Sbjct: 798 LGALDLG 804
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 151/345 (43%), Gaps = 69/345 (20%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTL--------- 55
LH V + + YV +L++ Y D+R+ F++MP ++ SWN +
Sbjct: 111 LHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGE 170
Query: 56 ----------MSIYNDFSDSG------------EVLILFKQLIFEGIVADKITLVILFSA 93
M N S SG E + LF++++ EGI +IT++ + A
Sbjct: 171 VEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPA 230
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
+ + K+ G+ +H Y K GL + + + N+L+ +YAK + +LR+FDEM RRN+VS
Sbjct: 231 LSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVS 290
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
+I+G+ MHG +A+ELF M G+
Sbjct: 291 WTSIISGF--------------------------AMHGL-----SVKAVELFADMRRAGI 319
Query: 214 TPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA- 271
P+ +SVL ACS ++ G I + NI D +IDM + G L EA
Sbjct: 320 RPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAE 379
Query: 272 -LVTFYKTDCKDVVTWTTMIEGLANYG---LGNEALRVFYQMERK 312
++ + + V W T++ + YG +G ++ +ER+
Sbjct: 380 QIIRDFPVEVNATV-WRTLLGCCSKYGEVEMGERTMKKILALERE 423
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 7/292 (2%)
Query: 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS 228
A +VFD+I LW ++ G ++ P +A+ +KK G+ PD +L AC+
Sbjct: 504 FAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACA 563
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
++ L G +H I + + D FV +LI +Y+ CG+L A F + KDVV+W +
Sbjct: 564 RINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNS 623
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
+I G + + L +F M+ +G+K ++ T + V++AC G + + R + Y
Sbjct: 624 LICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIED-Y 682
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
++ + LVD R G L AE+ M + ++ A+++A + +K+
Sbjct: 683 CIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRN-IVTMNAMIAAYAKGQDIVSARKI 741
Query: 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
+ + K S + + + Y+ H+++ E R M+ + + KP +I
Sbjct: 742 FDQIPKKDLISWSSMI---SGYSQANHFSDALEIFRQMQ--RAKVKPDAIVI 788
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/355 (20%), Positives = 150/355 (42%), Gaps = 34/355 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM-PFRDVGSWNTLMSIY 59
+G+ LH + K L D+ VGNSLI Y ++ ++ +FD+M R++ SW +++S +
Sbjct: 239 IGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGF 298
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
S + + LF + GI ++IT + + AC+ + G + + EY +
Sbjct: 299 AMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVA---FFKSMIYEYNI 355
Query: 120 NME----NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
N + ++ M + + EA ++ + N L+ V++
Sbjct: 356 NPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMK 415
Query: 176 EIV------DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
+I+ D V+ +M+ + ++ +A E+ +K++D+ + + + A
Sbjct: 416 KILALEREFGGDFVVLSNML---TELRRFSDA-EIVRKLVDQRNSVKSFFNIVRMEAIKR 471
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV----TFYKTDCKDVVT 285
L H + + + + + + ++ Y+ L+ LV F + +
Sbjct: 472 L---------HAYYIVSGLYNCHYAMSKVLRSYA---ILQPDLVFAHKVFDQIEAPTTFL 519
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
W +I GLA +A+ + + + G+ P+ TF +L AC + EG Q+
Sbjct: 520 WNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQM 574
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 102/218 (46%), Gaps = 6/218 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H +V + + +D + NSLI Y + +A +F +M +D SWN+++
Sbjct: 803 LGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLA 862
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYM 118
+ E L LF+ ++ EG + +T + + ACA + + G H + K LE
Sbjct: 863 NNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLD-HFESMKRLYSLEPQ 921
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI---NGYIDMELVDLAREVFD 175
+ ++ + + ++++ALR EM + V IL+ N + D+ + ++ + +
Sbjct: 922 MKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLN 981
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
E+ + + + + A + EA+ + + M D V
Sbjct: 982 ELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDV 1019
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 165/466 (35%), Positives = 267/466 (57%), Gaps = 6/466 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM----- 56
G+ +H+H+++ L++D+ V N+LI Y + DAR FD+M RDV SW+ ++
Sbjct: 299 GRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQ 358
Query: 57 SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
S Y D EV L +++ EG+ +K+T + + AC+ L G+ +H +KVG E
Sbjct: 359 SGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFE 418
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+++ A+ MYAKC + EA ++F +M +N+V+ L+ YI + A +VF E
Sbjct: 419 SDRSLQTAIFNMYAKCGSIYEAEQVFSKM-ENKNVVAWASLLTMYIKCGDLTSAEKVFSE 477
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ +++V W M+ G ++ + EL M EG PD ++S+L AC +LS L+ G
Sbjct: 478 MSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERG 537
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+LVH ++ + D V T+LI MYSKCG + EA F K +D V W M+ G +
Sbjct: 538 KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQH 597
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G+G EA+ +F +M ++ + PNE TF +V++AC +GL+ EG ++FR M +R++P +H
Sbjct: 598 GIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQH 657
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL RAG L +AEEFI+ MP E + ALL AC ++ L + A+++++L
Sbjct: 658 YGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLE 717
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ YV LSN YA G W + + R+ M + +K G S I++
Sbjct: 718 PSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEI 763
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 116/452 (25%), Positives = 224/452 (49%), Gaps = 44/452 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + + L DIY+GNSLI+FY + +F +M RDV +W+++++ Y
Sbjct: 97 GKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAG 156
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + F+++ I ++IT + + AC L + +H G+E + +
Sbjct: 157 NNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAV 216
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MY+KC E + LA E+F ++ +++
Sbjct: 217 ATALITMYSKCGE--------------------------------ISLACEIFQKMKERN 244
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ + ++ EA EL++KM+ G++P+ VS+L++C++ L GR +H
Sbjct: 245 VVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHS 304
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG-- 299
I + + D V ALI MY KC +++A TF + +DV++W+ MI G A G
Sbjct: 305 HISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDK 364
Query: 300 ---NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV-YRVQPTIE 355
+E ++ +M R+G+ PN+ TF+S+L AC G + +G Q+ + V + +++
Sbjct: 365 ESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQ 424
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
+ ++ ++ G +Y+AE+ M ++ +++ +LL+ I + +KV + M
Sbjct: 425 --TAIFNMYAKCGSIYEAEQVFSKMENKN-VVAWASLLTMYIKCGDLTSAEKVFSEM--- 478
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
++ ++ L+ YA G +V E +MK
Sbjct: 479 STRNVVSWNLMIAGYAQSGDIAKVFELLSSMK 510
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 35/271 (12%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
++L + KQ G++ + T + CA+L + GK VH
Sbjct: 64 QLLGIIKQ---RGLLVNSNTYGCIIEHCAKLRRFEDGKMVH------------------- 101
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
+ DE+G +I N LIN Y V +VF + +D+V W
Sbjct: 102 -------------KQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWS 148
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
SM+ P +A + F++M D + P+ +S+L AC++ S L+ R +H + +
Sbjct: 149 SMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKAS 208
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ D V TALI MYSKCG + A F K ++VV+WT +I+ A + NEA ++
Sbjct: 209 GMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELY 268
Query: 307 YQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+M + GI PN TFVS+L +C + G
Sbjct: 269 EKMLQAGISPNAVTFVSLLNSCNTPEALNRG 299
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 108/223 (48%), Gaps = 2/223 (0%)
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
KA + +EA++L + G+ + ++ C+ L + G++VH+ + + + D +
Sbjct: 55 KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
+ +LI+ YSK G + F + +DVVTW++MI A +A F +M+
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
I+PN TF+S+L AC + ++ E + + ++ + L+ + S+ G + A
Sbjct: 175 IEPNRITFLSILKACNNYSML-EKAREIHTVVKASGMETDVAVATALITMYSKCGEISLA 233
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
E + M E +S+ A++ A + + + ++ M++ G
Sbjct: 234 CEIFQKMK-ERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAG 275
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/462 (35%), Positives = 272/462 (58%), Gaps = 1/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G G+ HV K + DI+V N+ I + A +F+K RD+ +WN++++
Sbjct: 176 LGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCV 235
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E + ++K++ E + ++IT++ + S+C++++ L+ GK HCY + GLE+ +
Sbjct: 236 KRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIP 295
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MY KC E+ A LFD M +++ +VS ++ GY +D+ARE+ +I +K
Sbjct: 296 LTNALMDMYVKCGELLTARVLFDNM-AQKTLVSWTTMVLGYARFGFLDVAREILYKIPEK 354
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V W +++ GCV+AKQ +EAL LF +M + PD+ MV+ LSACS L L G +H
Sbjct: 355 SVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIH 414
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I ++ ++ D + TAL+DMY+KCG++ AL F + ++ +TWT +I GLA +G
Sbjct: 415 HYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQ 474
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL F +M GI P+E TF+ VL+AC H GL+ EG + F M + V P ++H+ C+
Sbjct: 475 DALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCM 534
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +AEE +K MP AL AC Y +G++ A ++++ Q
Sbjct: 535 VDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDS 594
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL++ Y+ W E AR+ M + K PG S++++
Sbjct: 595 GNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEI 636
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 121/516 (23%), Positives = 210/516 (40%), Gaps = 105/516 (20%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG---RMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
K + A + T L + + + L+ F L R+L+ ++ +V SWN + Y
Sbjct: 74 KQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILY-RIKELNVFSWNAAIRGY 132
Query: 60 NDFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ D +L+K+++ G + D T +L C G V + K G E
Sbjct: 133 VESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECD 192
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + NA + M C E+ A +F++ R
Sbjct: 193 IFVHNASITMLLSCGELSVAYDVFNKSRVR------------------------------ 222
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D+V W SM+ GCVK EA++++K+M E V P+E M+ ++S+CS + +L G+
Sbjct: 223 --DLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKE 280
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
H +I ++ + + AL+DMY KCG L A V F K +V+WTTM+ G A +G
Sbjct: 281 FHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGF 340
Query: 299 -------------------------------GNEALRVFYQMERKGIKPNEATFVSVLAA 327
G EAL +F++M+ + I+P++ T V+ L+A
Sbjct: 341 LDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSA 400
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP------ 381
C G + G + + +++ + LVD+ ++ G + +A + + +P
Sbjct: 401 CSQLGALDVGIWIHHYI-ERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLT 459
Query: 382 -------------AEDKF---------------ISYKALLSACITYSEFDLGKKVANNMM 413
A+D I++ +LSAC + G+K + M
Sbjct: 460 WTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMS 519
Query: 414 KLGNQSH--EAYVLLSNFYALEGHWTEVAEARRNMK 447
N S + Y + + GH E E +NM
Sbjct: 520 SKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMP 555
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 134/299 (44%), Gaps = 20/299 (6%)
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV-----------DLA 170
EN LL + +CK + + ++ +M VS ++ NG+ LV D
Sbjct: 57 ENPLLSILERCKSLVQLKQIQAQM------VSTGLIENGFAASRLVAFCALSESKELDYC 110
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSS 229
+ I + ++ W + + G V++ E L+K+M+ G + PD +L C
Sbjct: 111 TRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCG 170
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+ G V +L+ D FV A I M CG L A F K+ +D+VTW +M
Sbjct: 171 QYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSM 230
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I G GL EA++++ +ME + ++PNE T + ++++C + G + F +
Sbjct: 231 ITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLG-KEFHCYIKEHG 289
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
++ TI L+D+ + G L A M A+ +S+ ++ + D+ +++
Sbjct: 290 LEFTIPLTNALMDMYVKCGELLTARVLFDNM-AQKTLVSWTTMVLGYARFGFLDVAREI 347
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/462 (35%), Positives = 272/462 (58%), Gaps = 1/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G G+ HV K + DI+V N+ I + A +F+K RD+ +WN++++
Sbjct: 176 LGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCV 235
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E + ++K++ E + ++IT++ + S+C++++ L+ GK HCY + GLE+ +
Sbjct: 236 KRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIP 295
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MY KC E+ A LFD M +++ +VS ++ GY +D+ARE+ +I +K
Sbjct: 296 LTNALMDMYVKCGELLTARVLFDNM-AQKTLVSWTTMVLGYARFGFLDVAREILYKIPEK 354
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V W +++ GCV+AKQ +EAL LF +M + PD+ MV+ LSACS L L G +H
Sbjct: 355 SVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIH 414
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I ++ ++ D + TAL+DMY+KCG++ AL F + ++ +TWT +I GLA +G
Sbjct: 415 HYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQ 474
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL F +M GI P+E TF+ VL+AC H GL+ EG + F M + V P ++H+ C+
Sbjct: 475 DALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCM 534
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +AEE +K MP AL AC Y +G++ A ++++ Q
Sbjct: 535 VDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDS 594
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL++ Y+ W E AR+ M + K PG S++++
Sbjct: 595 GNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEI 636
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 121/516 (23%), Positives = 210/516 (40%), Gaps = 105/516 (20%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG---RMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
K + A + T L + + + L+ F L R+L+ ++ +V SWN + Y
Sbjct: 74 KQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILY-RIKELNVFSWNAAIRGY 132
Query: 60 NDFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ D +L+K+++ G + D T +L C G V + K G E
Sbjct: 133 VESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECD 192
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + NA + M C E+ A +F++ R
Sbjct: 193 IFVHNASITMLLSCGELSVAYDVFNKSRVR------------------------------ 222
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D+V W SM+ GCVK EA++++K+M E V P+E M+ ++S+CS + +L G+
Sbjct: 223 --DLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKE 280
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
H +I ++ + + AL+DMY KCG L A V F K +V+WTTM+ G A +G
Sbjct: 281 FHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGF 340
Query: 299 -------------------------------GNEALRVFYQMERKGIKPNEATFVSVLAA 327
G EAL +F++M+ + I+P++ T V+ L+A
Sbjct: 341 LDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSA 400
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP------ 381
C G + G + + +++ + LVD+ ++ G + +A + + +P
Sbjct: 401 CSQLGALDVGIWIHHYIER-HKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLT 459
Query: 382 -------------AEDKF---------------ISYKALLSACITYSEFDLGKKVANNMM 413
A+D I++ +LSAC + G+K + M
Sbjct: 460 WTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMS 519
Query: 414 KLGNQSH--EAYVLLSNFYALEGHWTEVAEARRNMK 447
N S + Y + + GH E E +NM
Sbjct: 520 SKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMP 555
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 134/299 (44%), Gaps = 20/299 (6%)
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV-----------DLA 170
EN LL + +CK + + ++ +M VS ++ NG+ LV D
Sbjct: 57 ENPLLSILERCKSLVQLKQIQAQM------VSTGLIENGFAASRLVAFCALSESKELDYC 110
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSS 229
+ I + ++ W + + G V++ E L+K+M+ G + PD +L C
Sbjct: 111 TRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCG 170
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+ G V +L+ D FV A I M CG L A F K+ +D+VTW +M
Sbjct: 171 QYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSM 230
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I G GL EA++++ +ME + ++PNE T + ++++C + G + F +
Sbjct: 231 ITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLG-KEFHCYIKEHG 289
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
++ TI L+D+ + G L A M A+ +S+ ++ + D+ +++
Sbjct: 290 LEFTIPLTNALMDMYVKCGELLTARVLFDNM-AQKTLVSWTTMVLGYARFGFLDVAREI 347
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 176/465 (37%), Positives = 267/465 (57%), Gaps = 6/465 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + K L+ D YV NSL+ Y + +FD+MP RDV SWN L+S Y
Sbjct: 65 GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124
Query: 62 FSDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + +FK++ E + D+ T+V SAC+ L+ L G+ ++ + E +
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVV-TEFEMSVR 183
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ M+ KC +D+A +FD M +N+ ++ GY+ +D AR +F+ K
Sbjct: 184 IGNALVDMFCKCGCLDKARAVFDSM-RDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVK 242
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VLW +MM+G V+ + +EALELF+ M G+ PD V+VS+L+ C+ L+ G+ +H
Sbjct: 243 DVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIH 302
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I +N +T D V TAL+DMY+KCG +E AL FY+ +D +WT++I GLA G+
Sbjct: 303 GYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSG 362
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL ++Y+ME G++ + TFV+VL AC H G + EG ++F M + VQP EH CL
Sbjct: 363 RALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCL 422
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDK---FISYKALLSACITYSEFDLGKKVANNMMKLGN 417
+DLL RAGLL +AEE I M E Y +LLSA Y + ++VA + K+
Sbjct: 423 IDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEV 482
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A+ LL++ YA W +V RR MK+L RK PG S I++
Sbjct: 483 SDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEI 527
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 168/358 (46%), Gaps = 70/358 (19%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
+N ++ D +VL LF +L +G+ D TL ++ + RL K+ G+ VH YA
Sbjct: 14 YNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAV 73
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K GLE+ + N+L+ MYA +++ ++FDEM +R++VS N LI+ Y
Sbjct: 74 KAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEM-PQRDVVSWNGLISSY---------- 122
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSL 230
V + E+A+ +FK+M E + DE +VS LSACS+L
Sbjct: 123 ---------------------VGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSAL 161
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL---------------------- 268
NL+ G ++RF++ + AL+DM+ KCG L
Sbjct: 162 KNLEIGERIYRFVV-TEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMV 220
Query: 269 ---------EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
+EA V F ++ KDVV WT M+ G + +EAL +F M+ GI+P+
Sbjct: 221 FGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNF 280
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEE 375
VS+L C +G + +G + G + + T++ V LVD+ ++ G + A E
Sbjct: 281 VLVSLLTGCAQTGALEQGKWIH---GYINENRVTVDKVVGTALVDMYAKCGCIETALE 335
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 96/200 (48%), Gaps = 3/200 (1%)
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++++ M+ K + L LF ++ +G+ PD + VL + L + G VH
Sbjct: 11 LLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHG 70
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ ++ + D++V +L+ MY+ G +E F + +DVV+W +I G +
Sbjct: 71 YAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFED 130
Query: 302 ALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ VF +M ++ +K +E T VS L+AC + G +++R + V + ++ L
Sbjct: 131 AIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFV--VTEFEMSVRIGNAL 188
Query: 361 VDLLSRAGLLYQAEEFIKIM 380
VD+ + G L +A M
Sbjct: 189 VDMFCKCGCLDKARAVFDSM 208
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 265/465 (56%), Gaps = 9/465 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF-----YGRMALFTDARVLFDKMPFRDVGSWNTLMS 57
+ +H + KT L D + L+ F G +A AR +FD++ + WNT++
Sbjct: 35 RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAY---ARTVFDRIFRPNTFMWNTMIR 91
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y++ + E L+L+ +++ + + T L AC+ + L + +H + K+G
Sbjct: 92 GYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGS 151
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ N+LL +Y+K ++ A LFD++ +R+ VS N +I+GY +++A E+F+ +
Sbjct: 152 EIYTTNSLLNVYSKSGDIKSARLLFDQV-DQRDTVSWNSMIDGYTKCGEIEMAYEIFNHM 210
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+++I+ W SM+ GCV A +P+EAL LF +M G+ D +VS L AC+ L L G+
Sbjct: 211 PERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGK 270
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H +I ++ I D + LIDMY+KCG LEEA+ F K + K V WT MI G A +G
Sbjct: 271 WIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 330
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G EAL F +M+ G++PN+ TF +L AC H+GL+ E LF M ++ +P+IEH+
Sbjct: 331 RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHY 390
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RAGLL +AEE I+ MP + + ALL+AC + +LGK++ ++++
Sbjct: 391 GCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDP 450
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+ L++ +A G W + A RR MKE K PG S+I +
Sbjct: 451 GHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISV 495
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 100/234 (42%), Gaps = 12/234 (5%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA++ K ++ D +G LI Y + +A +F KM + V W ++S Y
Sbjct: 269 GKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAI 328
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYMLN 120
E L F ++ G+ +++T + +AC+ +H K + ++ G + +
Sbjct: 329 HGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIE 388
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++ + + + EA L + M + N L+N ++L +++ ++
Sbjct: 389 HYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQV 448
Query: 181 DIVLWRSMMH-GCVKAKQPE--EALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
D +H + A E +A + ++M ++G VS L CS +S
Sbjct: 449 DPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQG--------VSKLPGCSVIS 494
>gi|125587880|gb|EAZ28544.1| hypothetical protein OsJ_12524 [Oryza sativa Japonica Group]
Length = 559
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 171/455 (37%), Positives = 260/455 (57%), Gaps = 3/455 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HAHV T L S +Y+ NSLI Y A +F P D S N ++S Y
Sbjct: 29 VGKQVHAHVVVTGLHSRVYLRNSLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYV 88
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH-CYATKVGL-EYM 118
SG+ L F+ + GI D+ T V L + C RL+K G++VH ++G+ +
Sbjct: 89 KGGCSGKALRFFRGMASRGIGVDQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRG 148
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L + NALL MYAKC EM+ A+R+FDE G R I S N ++ G+ + L+DLA + F E
Sbjct: 149 LILSNALLDMYAKCGEMNTAMRVFDEAGERDGI-SWNTMVAGFANAGLLDLASKYFGEAP 207
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+DI+ W +++ G + ++ + LF M+ V PD+ V+++SA + L R
Sbjct: 208 ARDIISWNALLAGYARYEEFSATMILFHDMLASSVIPDKVTAVTLISAVAGKGTLNSARS 267
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH ++++ + TQD+F+ +AL+DMY KCGS++ A F K KDV WT MI GLA +G
Sbjct: 268 VHGWVVKEHGTQDSFLASALVDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGH 327
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G+ AL +F++M+ +G +PN T V+VL+AC H+GL EGC++F + + ++P +EHF
Sbjct: 328 GDVALDLFWKMQAEGTEPNGVTLVAVLSACSHAGLFDEGCKIFDTLKQRFNIEPGVEHFG 387
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDLL+R+G L A + + MP + + ++LSA ++ + + ++ L
Sbjct: 388 CMVDLLARSGRLSDAVDLARRMPMKPSRSIWGSILSASSACQNTEVAEIASKELLCLEPA 447
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRK 453
YVLLSN YA EG W E R NM+ RK
Sbjct: 448 EEGGYVLLSNMYAAEGQWNYSNEVRENMERKGVRK 482
>gi|30017569|gb|AAP12991.1| hypothetical protein [Oryza sativa Japonica Group]
gi|40539031|gb|AAR87288.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711017|gb|ABF98812.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 676
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 171/456 (37%), Positives = 260/456 (57%), Gaps = 3/456 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HAHV T L S +Y+ NSLI Y A +F P D S N ++S Y
Sbjct: 146 VGKQVHAHVVVTGLHSRVYLRNSLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYV 205
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH-CYATKVGL-EYM 118
SG+ L F+ + GI D+ T V L + C RL+K G++VH ++G+ +
Sbjct: 206 KGGCSGKALRFFRGMASRGIGVDQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRG 265
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L + NALL MYAKC EM+ A+R+FDE G R I S N ++ G+ + L+DLA + F E
Sbjct: 266 LILSNALLDMYAKCGEMNTAMRVFDEAGERDGI-SWNTMVAGFANAGLLDLASKYFGEAP 324
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+DI+ W +++ G + ++ + LF M+ V PD+ V+++SA + L R
Sbjct: 325 ARDIISWNALLAGYARYEEFSATMILFHDMLASSVIPDKVTAVTLISAVAGKGTLNSARS 384
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH ++++ + TQD+F+ +AL+DMY KCGS++ A F K KDV WT MI GLA +G
Sbjct: 385 VHGWVVKEHGTQDSFLASALVDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGH 444
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G+ AL +F++M+ +G +PN T V+VL+AC H+GL EGC++F + + ++P +EHF
Sbjct: 445 GDVALDLFWKMQAEGTEPNGVTLVAVLSACSHAGLFDEGCKIFDTLKQRFNIEPGVEHFG 504
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDLL+R+G L A + + MP + + ++LSA ++ + + ++ L
Sbjct: 505 CMVDLLARSGRLSDAVDLARRMPMKPSRSIWGSILSASSACQNTEVAEIASKELLCLEPA 564
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK 454
YVLLSN YA EG W E R NM+ RK
Sbjct: 565 EEGGYVLLSNMYAAEGQWNYSNEVRENMERKGVRKS 600
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 107/246 (43%), Gaps = 35/246 (14%)
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
L+ ++ I D+ T + L + E+ GK VH + GL + + N+L+ MY
Sbjct: 116 LYMSMLASSIHPDEQTFLSLLKS-VDAERRSVGKQVHAHVVVTGLHSRVYLRNSLIKMYL 174
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
+++ A +F + VS NI+++GY
Sbjct: 175 DAGDVEAAEAMF-RCAPTADAVSCNIMLSGY----------------------------- 204
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
VK +AL F+ M G+ D+ V++L+ C L GR VH +++
Sbjct: 205 --VKGGCSGKALRFFRGMASRGIGVDQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVA 262
Query: 251 DA--FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
D + AL+DMY+KCG + A+ F + +D ++W TM+ G AN GL + A + F +
Sbjct: 263 DRGLILSNALLDMYAKCGEMNTAMRVFDEAGERDGISWNTMVAGFANAGLLDLASKYFGE 322
Query: 309 MERKGI 314
+ I
Sbjct: 323 APARDI 328
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 170/465 (36%), Positives = 264/465 (56%), Gaps = 3/465 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ HA KT D Y +SL+ Y + AR +FD+MP R V WN ++ Y
Sbjct: 65 GRKAHAATLKTGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVR 124
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + L +++ + D++TL+ +AC+R L G+ +H Y V + L +
Sbjct: 125 CGRNTEAVALAEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGV-TGFSLPV 183
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL MY K ++EA+ LF++M SR N+VS L++GY VD AR +F + +KD
Sbjct: 184 ANALLDMYVKNGCLEEAVNLFEKMPSR-NVVSWTTLVSGYAFAGQVDKARLLFHQCTEKD 242
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+++W +M++ V+ EAL LF+ M + PD +V++L+ C++L L G+L+H+
Sbjct: 243 LIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQ 302
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F N+ DA + TALIDMY+KCG +E+++ F + + +D WT +I GLA G
Sbjct: 303 FAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGR 362
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F MER KP+ TF+ VL+AC H GL+ EG + FR M VYR++P +EH+ CLV
Sbjct: 363 ALELFEDMERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLV 422
Query: 362 DLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+LL RAG L +AE+ IK +P +D + AL++AC + +++ + K G Q
Sbjct: 423 NLLGRAGQLDEAEKLIKSIPINKDAMPLFGALITACKAQGNVKMSERLTKRIGKQGYQIP 482
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+ +L+SN YA W +V R M +K G S+I++K Y
Sbjct: 483 DVNLLMSNVYATASRWEDVVRVRSKMAHPSVKKNAGCSLIEVKGY 527
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 43/332 (12%)
Query: 44 MPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG 103
MP R+ N L+ S +V+ ++ L G+VAD T + A L+ G
Sbjct: 9 MPLREC---NLLIRTLARRSSHADVMAVYYDLRERGLVADSFTYPFVLRAIGALQISVEG 65
Query: 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
+ H K G + ++L+ MY ++ A ++FDEM R
Sbjct: 66 RKAHAATLKTGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQR--------------- 110
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223
+V+W M+ V+ + EA+ L ++M +TPD +++
Sbjct: 111 -----------------AVVVWNMMLRCYVRCGRNTEAVALAEEMERGRLTPDRVTLLTA 153
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAF-VKTALIDMYSKCGSLEEALVTFYKTDCKD 282
L+ACS +L GR +H ++ + +T + V AL+DMY K G LEEA+ F K ++
Sbjct: 154 LTACSRAGDLSLGRKIHAYM--DGVTGFSLPVANALLDMYVKNGCLEEAVNLFEKMPSRN 211
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
VV+WTT++ G A G ++A +F+Q K + + +++ A G E LFR
Sbjct: 212 VVSWTTLVSGYAFAGQVDKARLLFHQCTEKDL----IMWTAMINAYVQHGCFIEALSLFR 267
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
M +++++P V L+ + G L Q +
Sbjct: 268 DM-QMHQIEPDRFTVVTLLTCCANLGALDQGQ 298
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 3/196 (1%)
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
+ + ++ + + G+ D VL A +L GR H L+ DA+ ++L+
Sbjct: 29 DVMAVYYDLRERGLVADSFTYPFVLRAIGALQISVEGRKAHAATLKTGFRWDAYTASSLM 88
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
DMY+ G LE A F + + VV W M+ G EA+ + +MER + P+
Sbjct: 89 DMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEMERGRLTPDRV 148
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
T ++ L AC +G ++ G ++ M GV + + L+D+ + G L +A +
Sbjct: 149 TLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVAN--ALLDMYVKNGCLEEAVNLFEK 206
Query: 380 MPAEDKFISYKALLSA 395
MP+ + +S+ L+S
Sbjct: 207 MPSRN-VVSWTTLVSG 221
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/466 (36%), Positives = 266/466 (57%), Gaps = 4/466 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA KT D Y +SL+ Y + AR +FD+MP R + WN +M Y
Sbjct: 65 GRKVHAAAVKTGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYIR 124
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L +++ G D++TLV +AC+R L G+ + Y V + L +
Sbjct: 125 CGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGV-FGFSLPV 183
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL MY K ++EA+++F +M RNI+S IL++GY +D AR +F + KD
Sbjct: 184 ANALLDMYTKNGYLEEAVKMFQQM-PERNIISWTILVSGYAVAGQLDKARMLFYQCTQKD 242
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++LW +M++ CV+ EEAL LF+ M + V PD+ +V++L+ C+++ L G +H+
Sbjct: 243 LILWTAMINACVQHGSFEEALTLFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQ 302
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ N+ DA + TALI+MYSKCG ++++L F + +D WT +I GLA G ++
Sbjct: 303 YAEGRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASK 362
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F +M+R KP+ TF+ VL AC H GL+ EG + F+ M +Y+++P IEH+ CLV
Sbjct: 363 ALELFEEMQRSKTKPDGITFIGVLNACCHGGLVDEGRRHFQAMKEIYQIEPRIEHYSCLV 422
Query: 362 DLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMKLG-NQS 419
+LL AGLLY+AE+ I+ MP D + ALL+AC Y ++ +++ + K +Q+
Sbjct: 423 NLLGHAGLLYEAEKLIRDMPVNNDTMPLFGALLTACKAYGNVEMSERLTKRIAKEDCSQN 482
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+ VL+SN YA W E R M +K G S+I++K Y
Sbjct: 483 PDVNVLMSNVYATASRWEESIRVRSKMTHPAVKKTAGCSMIEVKEY 528
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 146/338 (43%), Gaps = 41/338 (12%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
A + MP RD N L+ V+ ++ L G+VAD T + A
Sbjct: 2 ATACYHAMPLRDC---NVLIRTLARRGSFARVMAVYYDLRARGLVADSYTYPFVLRAIGV 58
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
++ G+ VH A K G + ++LL MY +D A ++FDEM R
Sbjct: 59 MKLSVEGRKVHAAAVKTGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRF------- 111
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
+VLW MM ++ + A+ L ++M G TPD
Sbjct: 112 -------------------------LVLWNMMMRCYIRCGRFTAAVALAEEMERSGATPD 146
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
+V+ ++ACS +L GR + R + V AL+DMY+K G LEEA+ F
Sbjct: 147 RVTLVTAVTACSRAGDLSLGRRI-RAYMDGVFGFSLPVANALLDMYTKNGYLEEAVKMFQ 205
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
+ +++++WT ++ G A G ++A +FYQ +K + + +++ AC G E
Sbjct: 206 QMPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKDL----ILWTAMINACVQHGSFEE 261
Query: 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
LFR M + RV+P V L+ + G L Q E
Sbjct: 262 ALTLFRDM-QLQRVEPDKFTVVTLLTCCANIGALDQGE 298
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ D VL A + GR VH ++ DA+ ++L++MY+ G ++
Sbjct: 40 RGLVADSYTYPFVLRAIGVMKLSVEGRKVHAAAVKTGFRWDAYTASSLLEMYTMLGRVDF 99
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F + + +V W M+ G A+ + +MER G P+ T V+ + AC
Sbjct: 100 ARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAEEMERSGATPDRVTLVTAVTACSR 159
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+G ++ G ++ M GV+ + + L+D+ ++ G L +A + + MP E IS+
Sbjct: 160 AGDLSLGRRIRAYMDGVFGFSLPVAN--ALLDMYTKNGYLEEAVKMFQQMP-ERNIISWT 216
Query: 391 ALLSACITYSEFDLGK 406
L+S + D +
Sbjct: 217 ILVSGYAVAGQLDKAR 232
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/445 (37%), Positives = 264/445 (59%), Gaps = 1/445 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ + +L+ Y + AR LFDKM R + SW T+MS Y E L LF+Q+
Sbjct: 301 DVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMR 360
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
FE ++ D++ LV + SAC LE G++VH + G+ + NALL +YAKC ++D
Sbjct: 361 FENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLD 420
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
EALR F+++ + + S N +++G+ VD AR+ F++I +KDIV W +M++ VK
Sbjct: 421 EALRTFEQLPCK-SAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHD 479
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
E+ E+F KM V PD+ ++S+LS+C+ + L +G V+ +I +N I DA + T
Sbjct: 480 LFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGT 539
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
ALIDMY KCG +E A F + K+V WT M+ A G EA+ ++ +ME +G+KP
Sbjct: 540 ALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKP 599
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
+ TF+++LAAC H GL+ EG + F ++ Y + PTI H+ C+VDLL R G L + +F
Sbjct: 600 DHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKF 659
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436
I+ MP E + +L+ AC ++ +L ++ ++++ ++ A+VLLSN YA G W
Sbjct: 660 IERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRW 719
Query: 437 TEVAEARRNMKELQTRKKPGNSIID 461
+V++ R + E K+PG ++I+
Sbjct: 720 DDVSKVRTKLHETGVPKQPGFTMIE 744
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 197/369 (53%), Gaps = 32/369 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + K + + N+L+ Y + + LF+KM RDV SWNT++S Y
Sbjct: 151 LGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYV 210
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF +++ G++ D+IT+V L S CA+L+ L GK +H Y L +
Sbjct: 211 LKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGS 270
Query: 121 MENALLLMYAKCKEMDEALRLFDEMG-SRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ N L+ MY+KC +MDEA L S ++V L++GY+ +D AR++FD++ +
Sbjct: 271 LLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNE 330
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+ +V W +MM G V+ E+LELF++M E V PDE +V+VLSAC L + GR V
Sbjct: 331 RSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSV 390
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC------------------- 280
H FI+ + D F+ AL+D+Y+KCG L+EAL TF + C
Sbjct: 391 HAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGV 450
Query: 281 ------------KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
KD+V+W TM+ + L NE+ +F +M+ +KP++ T +S+L++C
Sbjct: 451 DKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSC 510
Query: 329 RHSGLITEG 337
G + G
Sbjct: 511 AKVGALNHG 519
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 114/462 (24%), Positives = 202/462 (43%), Gaps = 96/462 (20%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HAH+ L D + + ++ F + A + + WNTL+
Sbjct: 54 IHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGC 113
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
EVL + ++ +G++ D T L AC + + G VH K G ++ N
Sbjct: 114 PQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNN 173
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ +Y+KC ++ E +LF++M + R+++S N +I+ Y+ L + R
Sbjct: 174 LMGLYSKCGKLKEVCQLFEKM-THRDVISWNTMISCYV---LKGMYR------------- 216
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
EAL+LF +M+ GV PDE MVS++S C+ L +L+ G+ +H +I+
Sbjct: 217 ---------------EALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIV 261
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEA-------------------LVTFY--------- 276
N + + L+DMYSKCG ++EA LV+ Y
Sbjct: 262 DNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKA 321
Query: 277 -----KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH- 330
K + + +V+WTTM+ G G E+L +F QM + + P+E V+VL+AC H
Sbjct: 322 RQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHL 381
Query: 331 ---------------SGLITEG------CQLFRRMGGVYRVQPTIEHFVC--------LV 361
G++ +G L+ + G + T E C ++
Sbjct: 382 EDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSML 441
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
D R+G + +A +F +P +D +S+ +++A + + F+
Sbjct: 442 DGFCRSGGVDKARDFFNKIPEKD-IVSWNTMVNAYVKHDLFN 482
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 139/286 (48%), Gaps = 13/286 (4%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
+D A ++ + + ++W +++ +K P+E LE + M+ +GV D ++ A
Sbjct: 83 LDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHA 142
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C +++ G VH IL+ ++ + L+ +YSKCG L+E F K +DV++W
Sbjct: 143 CCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISW 202
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
TMI G+ EAL +F +M G+ P+E T VS+++ C + G +L
Sbjct: 203 NTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLH----- 257
Query: 347 VYRVQPTI----EHFVCLVDLLSRAGLLYQAEEFI-KIMPAEDKFISYKALLSACITYSE 401
+Y V + CLVD+ S+ G + +A + + +E + + L+S + ++
Sbjct: 258 LYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNK 317
Query: 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
D +++ + K+ +S ++ + + Y G++ E E + M+
Sbjct: 318 IDKARQLFD---KMNERSLVSWTTMMSGYVQGGYYCESLELFQQMR 360
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/465 (35%), Positives = 264/465 (56%), Gaps = 9/465 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF-----YGRMALFTDARVLFDKMPFRDVGSWNTLMS 57
+ +H + KT L D + L+ F G +A AR +FD++ + WNT++
Sbjct: 35 RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAY---ARTVFDRIFRPNTFMWNTMIR 91
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y++ + E L+L+ +++ + + T L AC+ + + +H + K+G
Sbjct: 92 GYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGS 151
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ N+LL +Y+K ++ A LFD++ +R+ VS N +I+GY +++A E+F+ +
Sbjct: 152 EIYTTNSLLNVYSKSGDIKSARLLFDQV-DQRDTVSWNSMIDGYTKCGEIEMAYEIFNHM 210
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+++I+ W SM+ GCV A +P+EAL LF +M G+ D +VS L AC+ L L G+
Sbjct: 211 PERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGK 270
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H +I ++ I D + LIDMY+KCG LEEA+ F K + K V WT MI G A +G
Sbjct: 271 WIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 330
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G EAL F +M+ G++PN+ TF +L AC H+GL+ E LF M ++ +P+IEH+
Sbjct: 331 RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHY 390
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RAGLL +AEE I+ MP + + ALL+AC + +LGK++ ++++
Sbjct: 391 GCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDP 450
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+ L++ +A G W + A RR MKE K PG S+I +
Sbjct: 451 GHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISV 495
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 100/234 (42%), Gaps = 12/234 (5%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA++ K ++ D +G LI Y + +A +F KM + V W ++S Y
Sbjct: 269 GKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAI 328
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYMLN 120
E L F ++ G+ +++T + +AC+ +H K + ++ G + +
Sbjct: 329 HGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIE 388
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++ + + + EA L + M + N L+N ++L +++ ++
Sbjct: 389 HYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQV 448
Query: 181 DIVLWRSMMH-GCVKAKQPE--EALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
D +H + A E +A + ++M ++G VS L CS +S
Sbjct: 449 DPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQG--------VSKLPGCSVIS 494
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 170/461 (36%), Positives = 266/461 (57%), Gaps = 1/461 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H H K +S ++V N+LIH Y A+ +FD M RD+ SWNTL+ Y+
Sbjct: 135 GRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQ 194
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
++ EVL LF + I AD +T+V + AC+ L + ++ Y + LE + +
Sbjct: 195 YNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYL 254
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L+ MY + + A +FD M RNIVS N L+ G+ + + AR++FD + +D
Sbjct: 255 GNTLIDMYGRRSLAELAQGVFDRM-RERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRD 313
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W SM+ G +A Q +A++LF++M+ V PD+ + SVLSAC+ L L G VH
Sbjct: 314 VISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHH 373
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I ++ + D +V +LIDMY KCG +E+AL F++ KD V+WT++I GLA G N
Sbjct: 374 YIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANS 433
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F QM R+G++P TFV +L AC H+GL+ +G + F M V+ + P ++H+ C+V
Sbjct: 434 ALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVV 493
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLLSR+G + +A EFIK MP + ++ LLSAC + L + +++L
Sbjct: 494 DLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSG 553
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA W + + R M++ +K G+S I++
Sbjct: 554 NYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEV 594
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 115/458 (25%), Positives = 211/458 (46%), Gaps = 73/458 (15%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL-FTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LHAH+ +T L +D ++ + +I Y + A ++F+++ + WN ++ +
Sbjct: 34 KELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQ 93
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + ++ ++ +GI + +TL+ LF ACAR+ + G+ +H +A K+G E L +
Sbjct: 94 SDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFV 153
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MYA C ++ A ++FD M R D
Sbjct: 154 SNALIHMYAMCGQLGFAQKMFDGMLDR--------------------------------D 181
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G + + +E L LF M + D MV ++ ACS L + ++ + +
Sbjct: 182 LVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVK 241
Query: 242 FILQNNITQDAFVKTALIDMY-------------------------------SKCGSLEE 270
+I +NN+ D ++ LIDMY +K G+L
Sbjct: 242 YIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTA 301
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F +DV++WT+MI G + ++A+++F +M +KP++ T SVL+AC H
Sbjct: 302 ARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAH 361
Query: 331 SGLITEGCQL---FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
G + G + RR G VQ I L+D+ + G++ +A E M +D +
Sbjct: 362 LGKLDVGWAVHHYIRRHG----VQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDS-V 416
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQ-SHEAYV 424
S+ +++S + + + M++ G Q +H +V
Sbjct: 417 SWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFV 454
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 36/195 (18%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G +H ++ + + +DIYVGNSLI Y + + A +F +M +D SW +++S
Sbjct: 367 VGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLA 426
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N F++S L LF Q++ EG+ T V + ACA H GLEY
Sbjct: 427 VNGFANSA--LDLFSQMLREGVQPTHGTFVGILLACA-----------HAGLVNKGLEYF 473
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI- 177
+ME+ L+ A K + L G+ +D A E ++
Sbjct: 474 ESMESVHGLVPA-MKHYGCVVDLLSRSGN-------------------IDKAYEFIKKMP 513
Query: 178 VDKDIVLWRSMMHGC 192
+ D+V+WR ++ C
Sbjct: 514 IVPDVVVWRILLSAC 528
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 166/463 (35%), Positives = 268/463 (57%), Gaps = 2/463 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH V K +L SD+++ NSLI+FYG A +F MP +DV SWN +++ +
Sbjct: 191 LGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFA 250
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L+LF+++ + + + IT+V + SACA+ L +G+ + Y G L
Sbjct: 251 LGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLI 310
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NA+L MY KC +++A LF++M S ++IVS +++G+ + D A +FD + K
Sbjct: 311 LNNAMLDMYVKCGCINDAKDLFNKM-SEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHK 369
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
W +++ + +P AL LF +M + + PDE ++ L A + L + +G +
Sbjct: 370 WTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWI 429
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I +++I + + T+L+DMY+KCG+L +A+ F+ + KDV W+ MI LA YG G
Sbjct: 430 HVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQG 489
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
AL +F M IKPN TF ++L AC H+GL+ EG QLF +M +Y + P I+H+VC
Sbjct: 490 KAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVC 549
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VD+ RAGLL +A FI+ MP + ALL AC + +L + N+++L +
Sbjct: 550 VVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCN 609
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
H A+VLLSN YA G W +V+ R+ M++ +K+P S ID+
Sbjct: 610 HGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDV 652
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 116/434 (26%), Positives = 193/434 (44%), Gaps = 69/434 (15%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG--RMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K +HAH+ +T+ D Y + L+ Y + A+ +F+++P ++ WNTL+ Y
Sbjct: 89 KQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYA 148
Query: 61 DFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
SD + ++F ++ +K T LF A +RL+ LH G +H K L L
Sbjct: 149 SSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDL 208
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ N+L+ Y D A R+F M +++VS N +IN + L D
Sbjct: 209 FILNSLINFYGSSGAPDLAHRVFTNMPG-KDVVSWNAMINAFALGGLPD----------- 256
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+AL LF++M + V P+ MVSVLSAC+ +L++GR +
Sbjct: 257 --------------------KALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWI 296
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG---LANY 296
+I N T+ + A++DMY KCG + +A F K KD+V+WTTM++G L NY
Sbjct: 297 CSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNY 356
Query: 297 ----------------------------GLGNEALRVFYQME-RKGIKPNEATFVSVLAA 327
G AL +F++M+ K KP+E T + L A
Sbjct: 357 DEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCA 416
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
G I G + + + + L+D+ ++ G L +A E + +D ++
Sbjct: 417 SAQLGAIDFGHWIHVYIKK-HDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYV 475
Query: 388 SYKALLSACITYSE 401
+ A++ A Y +
Sbjct: 476 -WSAMIGALAMYGQ 488
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 9/238 (3%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT-PDEEVMVSVLSACS 228
A+ VF++I ++ W +++ G + P ++ +F M+ P++ + A S
Sbjct: 125 AKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAAS 184
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
L L G ++H +++ +++ D F+ +LI+ Y G+ + A F KDVV+W
Sbjct: 185 RLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNA 244
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
MI A GL ++AL +F +ME K +KPN T VSVL+AC + G R +
Sbjct: 245 MINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFG----RWICSYI 300
Query: 349 RVQPTIEHFV---CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
EH + ++D+ + G + A++ M +E +S+ +L +D
Sbjct: 301 ENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKM-SEKDIVSWTTMLDGHAKLGNYD 357
>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Brachypodium distachyon]
Length = 527
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 169/465 (36%), Positives = 265/465 (56%), Gaps = 3/465 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ HA KT D Y +SL+ Y + AR LFD+MP R + WN ++ Y
Sbjct: 65 GRKAHAAAMKTGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVR 124
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L +++ G+ DK+TLV + C+R L G+ +H Y V + L +
Sbjct: 125 CGRYTAAIALAEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGV-FGFSLPV 183
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL MY K ++EA++LF++M SR NI+S IL++GY +D AR +F + +KD
Sbjct: 184 ANALLDMYMKNGCLEEAVKLFEQMPSR-NIISWTILVSGYAFAGQLDKARVLFYQCSEKD 242
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+++W +M++ CV+ EEAL LF++M + V PD +V++L+ C++L L G +H+
Sbjct: 243 LIMWTAMINACVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQ 302
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F + + DA + TALIDMY+KCG +++++ F + +D WT++I GLA G
Sbjct: 303 FAVDRKMKVDAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGR 362
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F MER +KP+ TF+ VL+AC H GL+ EG + F M VYR+ P IEH+ CLV
Sbjct: 363 ALELFEDMERSKVKPDSITFIGVLSACCHGGLVDEGRKQFHAMKDVYRIPPRIEHYSCLV 422
Query: 362 DLLSRAGLLYQAEEFIK-IMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+LL RAGLL +AE+ I+ I +D + ALL+AC ++ +++ + + G Q
Sbjct: 423 NLLGRAGLLDEAEKLIRDIQINKDAMPLFGALLTACKAQGNVEMSERLTKRIGEQGYQIP 482
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+ +L+SN YA W + R M +K G S+I++K +
Sbjct: 483 DVNLLMSNVYATASRWEDAIRVRSKMAHPTIKKTAGCSLIEVKGH 527
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 142/331 (42%), Gaps = 41/331 (12%)
Query: 44 MPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG 103
MP RD N L+ V+ ++ L G+VAD T + A L+ G
Sbjct: 9 MPLRDC---NLLIRTLARRGSFARVMAVYYDLRGRGLVADSFTYPFVLRAIGVLKLSVEG 65
Query: 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
+ H A K G + ++L+ MY D A +LFDEM R
Sbjct: 66 RKAHAAAMKTGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPHR--------------- 110
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223
+V+W M+ V+ + A+ L ++M G+TPD+ +V+
Sbjct: 111 -----------------ALVVWNMMIRCYVRCGRYTAAIALAEEMERSGLTPDKVTLVTS 153
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
++ CS +L GR +H + + V AL+DMY K G LEEA+ F + +++
Sbjct: 154 VTVCSRAGDLSLGRRIHAY-MDGVFGFSLPVANALLDMYMKNGCLEEAVKLFEQMPSRNI 212
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
++WT ++ G A G ++A +FYQ K + + +++ AC G E LFR
Sbjct: 213 ISWTILVSGYAFAGQLDKARVLFYQCSEKDL----IMWTAMINACVQHGCFEEALSLFRE 268
Query: 344 MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
M + RV+P V L+ + G L Q E
Sbjct: 269 M-QMQRVEPDRFTIVTLLTCCANLGALDQGE 298
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 3/193 (1%)
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ D VL A L GR H ++ DA+ ++L+DMY+ G +
Sbjct: 40 RGLVADSFTYPFVLRAIGVLKLSVEGRKAHAAAMKTGFWWDAYTASSLMDMYTLLGRADV 99
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F + + +V W MI G A+ + +MER G+ P++ T V+ + C
Sbjct: 100 ARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIALAEEMERSGLTPDKVTLVTSVTVCSR 159
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+G ++ G ++ M GV+ + + L+D+ + G L +A + + MP+ + IS+
Sbjct: 160 AGDLSLGRRIHAYMDGVFGFSLPVAN--ALLDMYMKNGCLEEAVKLFEQMPSRN-IISWT 216
Query: 391 ALLSACITYSEFD 403
L+S + D
Sbjct: 217 ILVSGYAFAGQLD 229
>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 164/439 (37%), Positives = 260/439 (59%), Gaps = 3/439 (0%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N +++ Y + L AR LF+++P +DV SW T++ Y + E L++++ ++ G+
Sbjct: 471 NVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLA 530
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
++I +V L SAC RL + G +H K G + ++ ++ YA C MD A
Sbjct: 531 LNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQ 590
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
F E+G++ ++ S N L++G+I +VD AR++FD++ ++D+ W +M+ G + Q A
Sbjct: 591 F-EVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIA 649
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
LELF KM+ G+ P+E MVSV SA ++L L+ GR H +I +I + ++ ALIDM
Sbjct: 650 LELFHKMVASGIKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRAALIDM 709
Query: 262 YSKCGSLEEALVTFYKTDCK--DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
Y+KCGS+ AL F + K V W +I GLA++G + L VF M+R IKPN
Sbjct: 710 YAKCGSINSALQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPI 769
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
TF+ VL+AC H+GL+ G ++FR M Y V+P I+H+ C+VDLL RAGLL +AEE I+
Sbjct: 770 TFIGVLSACCHAGLVEPGRRIFRIMKSAYNVEPDIKHYGCMVDLLGRAGLLEEAEEMIRS 829
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
MP + + + LL+AC T+ + ++G++ A ++ L VLLSN YA G W +V
Sbjct: 830 MPMKADIVIWGTLLAACRTHGDVNIGERAAESLAGLAPSHGGGKVLLSNIYADAGRWEDV 889
Query: 440 AEARRNMKELQTRKKPGNS 458
+ RR ++ + + PG S
Sbjct: 890 SLVRRAIQNQRMERMPGCS 908
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/398 (28%), Positives = 194/398 (48%), Gaps = 63/398 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP-------------FRD 48
G+ LH+ V K L S+ ++ NSLI+ Y + DA++LFD P +
Sbjct: 288 GRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAK 347
Query: 49 VGSWNTLMSIYNDFSDSG------------------EVLILFKQLIFEGIVADKITLVIL 90
G + +++ D G E L +FK + +G+V + +TLV +
Sbjct: 348 AGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNV 407
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
AC+ ++ + +H A K+ +E ++ + L+ Y C + EA RLFD M N
Sbjct: 408 IYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRM-PEVN 466
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+VS N+++NGY LVD+ARE+F+ + DKD++ W +M+ G + + EAL +++ M+
Sbjct: 467 LVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLR 526
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE- 269
G+ +E ++V+++SAC L+ + G +H +++ F++T +I Y+ CG ++
Sbjct: 527 SGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDL 586
Query: 270 ----------------EALVT--------------FYKTDCKDVVTWTTMIEGLANYGLG 299
ALV+ F +DV +W+TMI G A
Sbjct: 587 ACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQS 646
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
AL +F++M GIKPNE T VSV +A G + EG
Sbjct: 647 RIALELFHKMVASGIKPNEVTMVSVFSAIATLGTLKEG 684
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 169/359 (47%), Gaps = 44/359 (12%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L SA G+ +H K+GL ++N+L+ MYAK + +A LFD +
Sbjct: 275 LVSALKYCSSSSQGRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPT-L 333
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N +S NI++ GY +D AR++FD + DK V + +M+ G V+ + EALE+FK M
Sbjct: 334 NPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMR 393
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+GV P++ +V+V+ ACS + R++H ++ + V T L+ Y C +
Sbjct: 394 SDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVG 453
Query: 270 EA-----------LVT--------------------FYKTDCKDVVTWTTMIEGLANYGL 298
EA LV+ F + KDV++W TMI+G
Sbjct: 454 EARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNR 513
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL----FRRMGGVYR-VQPT 353
+EAL ++ M R G+ NE V++++AC I +G QL ++ Y +Q T
Sbjct: 514 LHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTT 573
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
I HF ++ A L ++ + A+D S+ AL+S I D +K+ ++M
Sbjct: 574 IIHFYAACGMMDLACLQFE-------VGAKDHLESWNALVSGFIKNRMVDQARKIFDDM 625
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 44/227 (19%)
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV--- 273
E +VS L CSS S GR +H +L+ + + F++ +LI+MY+K GS+++A +
Sbjct: 272 ELALVSALKYCSSSSQ---GRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFD 328
Query: 274 ---TFYKTDC-------------------------KDVVTWTTMIEGLANYGLGNEALRV 305
T C K V++TTMI GL EAL V
Sbjct: 329 ACPTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEV 388
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F M G+ PN+ T V+V+ AC H G I L RM ++ +E V + L
Sbjct: 389 FKDMRSDGVVPNDLTLVNVIYACSHFGEI-----LNCRMIHAIAIKLFVEGLVLVSTNLM 443
Query: 366 RAGLLY----QAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
RA L +A MP E +S+ +L+ D+ +++
Sbjct: 444 RAYCLCSGVGEARRLFDRMP-EVNLVSWNVMLNGYAKAGLVDMAREL 489
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 168/463 (36%), Positives = 265/463 (57%), Gaps = 5/463 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL--FTDARVLFDKMPFRDVGSWNTLMSIYN 60
K + +H+T + D + +I F A + A +LF +P R WNT++ +
Sbjct: 5 KQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFT 64
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D + VL L+K ++ G + + T L ACA+L L +G +H A ++G E
Sbjct: 65 DKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDF 124
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGS-RRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++N LL +YA C MD A RLFD GS R++V+ +INGY V +AR++FDE+ +
Sbjct: 125 VQNGLLHLYASCNCMDSARRLFD--GSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPE 182
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K+ V W +M+ G + EALELF M G P+ +V L+AC+ L L GR +
Sbjct: 183 KNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWI 242
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ +N + D + TALIDMY+KCG +E A F + +DV +T++I GLAN+G
Sbjct: 243 HAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHS 302
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
A+ +F +M+ +G+ PNE TF+ +L+AC GL+ EG ++F+ M +Y ++P ++H+ C
Sbjct: 303 ATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGC 362
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
LVDLL RAG+L A+ ++ MP E ALL+AC + + +LGK+ + +
Sbjct: 363 LVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDH 422
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+VLLSN YA W +VA+ R+ M+E + +K PG S+I++
Sbjct: 423 GGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEV 465
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 109/237 (45%), Gaps = 24/237 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA+V + + D +G +LI Y + A +FD+M RDV ++ +L+S +
Sbjct: 239 GRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLAN 298
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYMLN 120
S + +F ++ EG+ +++T + L SAC+R+ + G + T + G+E ++
Sbjct: 299 HGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQ 358
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
L+ + + +++A R+ EM + L L+N V+L +E + + +
Sbjct: 359 HYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAE- 417
Query: 181 DIVLWRSMMHGCV---------KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS 228
RS+ HG V A Q E+ ++ K M EE V + CS
Sbjct: 418 -----RSLDHGGVHVLLSNMYASANQWEDVAKVRKGM--------EEKKVKKVPGCS 461
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 168/463 (36%), Positives = 265/463 (57%), Gaps = 5/463 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL--FTDARVLFDKMPFRDVGSWNTLMSIYN 60
K + +H+T + D + +I F A + A +LF +P R WNT++ +
Sbjct: 30 KQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFT 89
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D + VL L+K ++ G + + T L ACA+L L +G +H A ++G E
Sbjct: 90 DKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDF 149
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGS-RRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++N LL +YA C MD A RLFD GS R++V+ +INGY V +AR++FDE+ +
Sbjct: 150 VQNGLLHLYASCNCMDSARRLFD--GSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPE 207
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K+ V W +M+ G + EALELF M G P+ +V L+AC+ L L GR +
Sbjct: 208 KNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWI 267
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ +N + D + TALIDMY+KCG +E A F + +DV +T++I GLAN+G
Sbjct: 268 HAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHS 327
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
A+ +F +M+ +G+ PNE TF+ +L+AC GL+ EG ++F+ M +Y ++P ++H+ C
Sbjct: 328 ATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGC 387
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
LVDLL RAG+L A+ ++ MP E ALL+AC + + +LGK+ + +
Sbjct: 388 LVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDH 447
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+VLLSN YA W +VA+ R+ M+E + +K PG S+I++
Sbjct: 448 GGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEV 490
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 109/237 (45%), Gaps = 24/237 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA+V + + D +G +LI Y + A +FD+M RDV ++ +L+S +
Sbjct: 264 GRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLAN 323
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYMLN 120
S + +F ++ EG+ +++T + L SAC+R+ + G + T + G+E ++
Sbjct: 324 HGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQ 383
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
L+ + + +++A R+ EM + L L+N V+L +E + + +
Sbjct: 384 HYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAE- 442
Query: 181 DIVLWRSMMHGCV---------KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS 228
RS+ HG V A Q E+ ++ K M EE V + CS
Sbjct: 443 -----RSLDHGGVHVLLSNMYASANQWEDVAKVRKGM--------EEKKVKKVPGCS 486
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 165/441 (37%), Positives = 253/441 (57%), Gaps = 2/441 (0%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
+S++ +GR + +AR +FD + +DV +W ++S + E L LF + EG
Sbjct: 204 SSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWP 263
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
D+ +V + +ACARLE G+ H A + GL LN++NAL+ MY+ + A RL
Sbjct: 264 VDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRL 323
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
FD G + S N +I GY+ V A+E+F + DKD V W +M+ GCV+ Q EA
Sbjct: 324 FDS-GQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEA 382
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L +F M +G+ PDE +VSV+SAC+++S+L+ G+ +H +I ++ T + T+LIDM
Sbjct: 383 LTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDM 442
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNEAT 320
Y KCG LE AL F + + W +I GLA GL ++L +F +ME PNE T
Sbjct: 443 YMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEIT 502
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
F VL+ACRH+GL+ EG F+ M Y + P I H+ C+VDLL RAG + +AE I+ M
Sbjct: 503 FTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESM 562
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440
P ++ ALL +C + + ++G++V ++ L + +LSN YA EG W V
Sbjct: 563 PMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVK 622
Query: 441 EARRNMKELQTRKKPGNSIID 461
+ R +MK+ K PG+S+++
Sbjct: 623 DLRGSMKQWHVPKIPGSSVVE 643
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 121/450 (26%), Positives = 188/450 (41%), Gaps = 87/450 (19%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR------------DVGSW 52
+HA + L +D + + LI F T R+L +PF + S
Sbjct: 23 IHAQFVASGLLADAFAASRLILFT------TSTRLL--PLPFHHSLRLLHVVHRPNAFSC 74
Query: 53 NTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK 112
N ++ + L L+ + D T IL +ACA + G+ VHC+A +
Sbjct: 75 NMVLKAAREHGLPHLCLPLYASM---SAAPDCYTHTILAAACATRRAIEEGRQVHCHAVR 131
Query: 113 VGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME------- 165
G L + NAL+ MY+ C + +A ++FD G + VS N ++ Y+ E
Sbjct: 132 HGFGRNLYLANALMSMYSACGCLGDARKVFDA-GPVWDAVSWNTILAAYVQAEDVDQAVG 190
Query: 166 ------------------------LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
+VD AR+VFD + KD+ W +M+ + + EA
Sbjct: 191 VFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEA 250
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L LF M EG DE VMV V++AC+ L + G + H + + V+ ALI M
Sbjct: 251 LALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHM 310
Query: 262 YS-------------------------------KCGSLEEALVTFYKTDCKDVVTWTTMI 290
YS K GS+++A F KD V+WTTMI
Sbjct: 311 YSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMI 370
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
G +EAL +F M+ +GIKP+E T VSV++AC + + +G + + ++
Sbjct: 371 SGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIRE-HQY 429
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
T+ L+D+ + G L A E M
Sbjct: 430 TITVILGTSLIDMYMKCGCLESALEVFDTM 459
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 10/199 (5%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IYNDFSDSGEVLILFKQ 74
D + NS+I Y + DA+ LF MP +D SW T++S + ND S E L +F
Sbjct: 331 DQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQND--QSSEALTIFNN 388
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+ +GI D++TLV + SAC + L GK++H Y + + + +L+ MY KC
Sbjct: 389 MQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGC 448
Query: 135 MDEALRLFDEMGSRR----NIVSLNILINGYIDMELVDLAREV-FDEIVDKDIVLWRSMM 189
++ AL +FD M R N V + + +NG + M+ +D+ E+ + + + ++
Sbjct: 449 LESALEVFDTMEERGTPCWNAVIVGLAMNGLV-MKSLDMFSEMESSSTATPNEITFTGVL 507
Query: 190 HGCVKAKQPEEALELFKKM 208
C A EE FK M
Sbjct: 508 SACRHAGLVEEGQHFFKLM 526
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/463 (35%), Positives = 271/463 (58%), Gaps = 3/463 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G + HV K +D++V N+ +HF+ AR LFD+ P RDV SWNTL+ Y
Sbjct: 140 GAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVR 199
Query: 62 FSDSGEVLILFKQLIFEG--IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L LF +L+ +G + D++T++ S CA++ L GK +H + G+ +
Sbjct: 200 SGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTV 259
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NA++ MY KC ++ A +F+ + + +VS +I G+ + +++ AR +FDE+ +
Sbjct: 260 RLMNAVMDMYVKCGSLELAKSVFERI-DNKTVVSWTTMIVGHARLGMMEDARMLFDEMPE 318
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D+ W ++M G V+ KQ +EA+ LF +M + V P+E MV++LSACS L L+ G V
Sbjct: 319 RDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWV 378
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I ++ + + T+L+DMY+KCG++++A+ F + K+ +TWT MI GLAN+G
Sbjct: 379 HHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHA 438
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+EA+ F +M G++P+E TF+ VL+AC H+GL+ EG Q F M Y ++ ++H+ C
Sbjct: 439 DEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSC 498
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
++DLL RAG L +AE+ + MP + + + AL AC + LG+K A +++L
Sbjct: 499 MIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSD 558
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL+N YA + + R M+ L K PG S I+L
Sbjct: 559 SGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIEL 601
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/387 (27%), Positives = 176/387 (45%), Gaps = 68/387 (17%)
Query: 69 LILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLL 127
L L++ L+ D +T L ACARL+ YG V + K+G + + NA +
Sbjct: 105 LPLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVH 164
Query: 128 MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRS 187
++ M A RLFDE R++VS N LI GY
Sbjct: 165 FWSVSGSMVLARRLFDE-SPARDVVSWNTLIGGY-------------------------- 197
Query: 188 MMHGCVKAKQPEEALELFKKMIDEG--VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
V++ P EALELF +++++G V PDE M+ +S C+ + +L+ G+ +H F+
Sbjct: 198 -----VRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDS 252
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL------- 298
+ + A++DMY KCGSLE A F + D K VV+WTTMI G A G+
Sbjct: 253 KGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARML 312
Query: 299 ------------------------GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
G EA+ +F++M+ + PNE T V++L+AC G +
Sbjct: 313 FDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGAL 372
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
G + + +++ ++ LVD+ ++ G + +A K +P ++ +++ A++
Sbjct: 373 EMGMWVHHYIDR-HQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNA-LTWTAMIC 430
Query: 395 ACITYSEFDLGKKVANNMMKLGNQSHE 421
+ D + M+ LG Q E
Sbjct: 431 GLANHGHADEAIEYFQRMIDLGLQPDE 457
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 148/343 (43%), Gaps = 78/343 (22%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFY-------------------------------G 29
+GK LH V + + + N+++ Y
Sbjct: 242 LGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHA 301
Query: 30 RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
R+ + DAR+LFD+MP RDV WN LM+ Y E + LF ++ + ++IT+V
Sbjct: 302 RLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVN 361
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L SAC++L L G VH Y + L + + +L+ MYAKC + +A+
Sbjct: 362 LLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAIC--------- 412
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+F EI DK+ + W +M+ G +EA+E F++MI
Sbjct: 413 -----------------------IFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMI 449
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGR----LVH-RFILQNNITQDAFVKTALIDMYSK 264
D G+ PDE + VLSAC ++ GR L+H ++ L+ + + +ID+ +
Sbjct: 450 DLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKH----YSCMIDLLGR 505
Query: 265 CGSLEEA--LVTFYKTDCKDVVTWTTMIEGLANYG---LGNEA 302
G L+EA LV D D V W + +G LG +A
Sbjct: 506 AGHLDEAEQLVNTMPMD-PDAVVWGALFFACRMHGNITLGEKA 547
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 179/492 (36%), Positives = 267/492 (54%), Gaps = 34/492 (6%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIYND 61
+HA + KT+LD + +V L+ + D AR +FD++P D WNT++ Y +
Sbjct: 22 IHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLN 81
Query: 62 FSDSGEVLILFKQLIF-EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E + LF Q+ E I D +L ++ AC RL+ G+ +H K+GL L
Sbjct: 82 SQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLF 141
Query: 121 MENALLLMYAKCKEMDEALRLFDEMG------------------------------SRRN 150
+E AL+ MYAK +++ A + DEM R+
Sbjct: 142 VETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERD 201
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+VS N +I+G+ + V A+++FD ++D++ W SM+ KA+Q EAL LF +M
Sbjct: 202 LVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQL 261
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
V PD+ MVSVLSAC + L G+++H I +N I D + T+L+DMY+KCG ++
Sbjct: 262 ANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDN 321
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
+L F + +DV W+ MI GLAN+G G AL F +M + IKPN+ TF+ VL+AC H
Sbjct: 322 SLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSH 381
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
GL+ EG F M VY V P IEH+ C+VD+L RAG L +A E IK MP I ++
Sbjct: 382 IGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWR 441
Query: 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450
ALL AC Y ++ ++ N+++L YVLLSN Y+ W +V RR MK +
Sbjct: 442 ALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNIN 501
Query: 451 TRKKPGNSIIDL 462
+K PG+S I++
Sbjct: 502 IQKVPGSSSIEV 513
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 136/356 (38%), Gaps = 102/356 (28%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARV---------------------- 39
G+ LH V K L SD++V +LI Y + AR
Sbjct: 124 GQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVR 183
Query: 40 ---------LFDKMPFRDVGSWNTLMSIYNDFSDSG------------------------ 66
LFD+MP RD+ SWNT++ + D G
Sbjct: 184 VGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAY 243
Query: 67 -------EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L LF ++ ++ DK+T+V + SAC + L GK +H + +E L
Sbjct: 244 AKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDL 303
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ +L+ MYAKC ++D +LR+F+ M +R
Sbjct: 304 KLGTSLVDMYAKCGDIDNSLRVFNGMNNR------------------------------- 332
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+ W +M+ G E AL+ F KMI E + P++ + VLSACS + + G
Sbjct: 333 -DVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEG--- 388
Query: 240 HRFILQNNITQDAFVKT----ALIDMYSKCGSLEEALVTFYKTD-CKDVVTWTTMI 290
+ + D K ++D+ + G L+EA+ D + W ++
Sbjct: 389 WTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALL 444
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 56/113 (49%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MGK +H + + ++ D+ +G SL+ Y + ++ +F+ M RDV +W+ ++
Sbjct: 286 MGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLA 345
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV 113
+ L F ++I E I + +T + + SAC+ + + G T +KV
Sbjct: 346 NHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKV 398
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/462 (35%), Positives = 267/462 (57%), Gaps = 2/462 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ ++ V K D ++ V N LIHFY L +AR +FD+ +DV +W T++ Y
Sbjct: 276 GESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAA 335
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E + +F+ ++ + +++TL+ + SAC+ + L GK VH + + L++
Sbjct: 336 HDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSL 395
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL MY KC + +A LFD M ++ ++ S ++NGY ++ AR FD+ K+
Sbjct: 396 HNALLDMYVKCDCLVDARELFDRMATK-DVYSWTSMVNGYAKCGDLESARRFFDQTPRKN 454
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G + +P+E+L+LF +M++ GV P E +VSVLSAC L+ L G +H+
Sbjct: 455 AVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQ 514
Query: 242 -FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
F++ I ++ A++DMY+KCGS++ A F +++++W TMI G A G
Sbjct: 515 YFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAK 574
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+A+ VF QM G +PN TFVS+L AC H GLI+EG + F M Y ++P H+ C+
Sbjct: 575 QAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACM 634
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL R GLL +A + I MP + ++ ALL+AC + +L + A+N+++L +
Sbjct: 635 VDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPEDS 694
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL+N A + W++V R MK+ +K PG S+I++
Sbjct: 695 GIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEI 736
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 112/456 (24%), Positives = 205/456 (44%), Gaps = 75/456 (16%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIY 59
K + A +T T + + + + +I F +A D A +F+++ + WNT++ Y
Sbjct: 174 KQIQARMTLTGIITHAFPVSRVIAFCA-LAHSGDLHYAHTIFNRVEQPNTFMWNTMIRGY 232
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ F + + D + V AC + E + G++V+C K+G + L
Sbjct: 233 QNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCEL 292
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ N L+ YA+ + A ++FDE S +++V+ +I+GY
Sbjct: 293 LVRNGLIHFYAERGLLKNARQVFDE-SSDKDVVTWTTMIDGY------------------ 333
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
H C EEA+E+F+ M+ V P+E +++V+SACS + NL+ G+ V
Sbjct: 334 --------AAHDC-----SEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRV 380
Query: 240 HRFILQNNI-------------------------------TQDAFVKTALIDMYSKCGSL 268
H + + N+ T+D + T++++ Y+KCG L
Sbjct: 381 HEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDL 440
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E A F +T K+ V W+ MI G + E+L++F++M +G+ P E T VSVL+AC
Sbjct: 441 ESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSAC 500
Query: 329 RHSGLITEGCQLFRR--MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
+ G + + +G + + T+E+ +VD+ ++ G + A E MP E
Sbjct: 501 GQLTCLNLGDWIHQYFVVGKIIPLSVTLEN--AIVDMYAKCGSIDAATEVFSTMP-ERNL 557
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
IS+ +++ Y+ K+ N ++ N E
Sbjct: 558 ISWNTMIAG---YAANGRAKQAINVFDQMRNMGFEP 590
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 132/305 (43%), Gaps = 67/305 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MGK +H V + + + + N+L+ Y + DAR LFD+M +DV SW ++++ Y
Sbjct: 376 MGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYA 435
Query: 61 DFSD-------------------------------SGEVLILFKQLIFEGIVADKITLVI 89
D E L LF +++ G+V + TLV
Sbjct: 436 KCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVS 495
Query: 90 LFSACARLEKLHYGKTVHCYATKVG--LEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ SAC +L L+ G +H Y VG + + +ENA++ MYAKC +D A +F M
Sbjct: 496 VLSACGQLTCLNLGDWIHQYFV-VGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTM-P 553
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
RN++S N +I GY +G +AKQ A+ +F +
Sbjct: 554 ERNLISWNTMIAGY--------------------------AANG--RAKQ---AINVFDQ 582
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCG 266
M + G P+ VS+L+ACS + GR + I + ++D+ + G
Sbjct: 583 MRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTG 642
Query: 267 SLEEA 271
LEEA
Sbjct: 643 LLEEA 647
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 178/462 (38%), Positives = 256/462 (55%), Gaps = 36/462 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K D+YV NSL+HFY + A +FD+M RDV SW L+S Y
Sbjct: 124 GEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVR 183
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + LF ++ +V + T V + AC R+ L GK VH K L +
Sbjct: 184 TGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVV 240
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC+ + EA R++FDE+ D+D
Sbjct: 241 GNALVDMYVKCECLCEA--------------------------------RKLFDELPDRD 268
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W S++ G V+ KQP+++LELF M GV PD ++ SVLSAC+SL L YGR V
Sbjct: 269 IVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQE 328
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I + I D + TAL+DMY+KCG +E AL F +++ TW ++ GLA +G G+E
Sbjct: 329 YIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHE 388
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM-GGVYRVQPTIEHFVCL 360
AL+ F M GI+PNE TF+++L AC HSGL+ EG F +M + P +EH+ C+
Sbjct: 389 ALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCM 448
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLL RAGLL +A +FI+ MP + + ALLSAC +L +++ +++++L +Q
Sbjct: 449 IDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKSQDS 508
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA W +V RR MK+ RK PG+S+I++
Sbjct: 509 GVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEV 550
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 139/294 (47%), Gaps = 35/294 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MGKG+H V K A + VGN+L+ Y + +AR LFD++P RD+ SW +++S
Sbjct: 221 MGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLV 280
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L LF + G+ D+I L + SACA L L YG+ V Y + G+E+ ++
Sbjct: 281 QCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIH 340
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAKC ++ AL +F+ + RNI + N L+ G
Sbjct: 341 IGTALVDMYAKCGCIEMALHIFNGI-PNRNIFTWNALLGGL------------------- 380
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-LV 239
MHG EAL+ F+ MI G+ P+E +++L+AC + GR
Sbjct: 381 -------AMHG-----HGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYF 428
Query: 240 HRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-KDVVTWTTMIE 291
++ I Q N + +ID+ + G L+EA DV+ W ++
Sbjct: 429 YQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLS 482
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 9/202 (4%)
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
P+ A ++ +++ G PD VL AC+ +Q G VH ++ D +V+ +
Sbjct: 86 PKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNS 145
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
L+ YS CG A F + +DVV+WT +I G GL +EA+ +F +M+ + PN
Sbjct: 146 LLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMD---VVPN 202
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEE 375
ATFVSVL AC G ++ G + G VY+ I V LVD+ + L +A +
Sbjct: 203 VATFVSVLVACGRMGYLSMGKGVH---GLVYKRAFGIGLVVGNALVDMYVKCECLCEARK 259
Query: 376 FIKIMPAEDKFISYKALLSACI 397
+P D +S+ +++S +
Sbjct: 260 LFDELPDRD-IVSWTSIISGLV 280
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 270/462 (58%), Gaps = 2/462 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HAH+ + + +I V L+H Y A+ +F++M R+ SWN+++ Y
Sbjct: 498 GRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQ 557
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
++ E L LFKQ+ GI D +L + S+C L G+ +H + + +E +
Sbjct: 558 NGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGIL 617
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ L+ MYAKC MD A +++D+ +++++ N++++ +++ + A+ +FD++ ++
Sbjct: 618 QVVLVDMYAKCGSMDYAWKVYDQT-IKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRN 676
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
LW S++ G +E+ F +M++ + D MV++++ CSSL L++G +H
Sbjct: 677 TALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHS 736
Query: 242 FILQNNITQDAFV-KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I++ + V +TAL+DMYSKCG++ +A F + K++V+W MI G + +G
Sbjct: 737 LIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSK 796
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL ++ +M +KG+ PNE TF+++L+AC H+GL+ EG ++F M Y ++ EH+ C+
Sbjct: 797 EALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCM 856
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L A+EF++ MP E + ++ ALL AC + + D+G+ A + +L Q+
Sbjct: 857 VDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNP 916
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YV++SN YA G W EV + R+ MK +K PG S I++
Sbjct: 917 GPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEI 958
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/399 (29%), Positives = 182/399 (45%), Gaps = 41/399 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSI 58
GK +H + + D Y+ ++ Y R D AR LF++MP R++ +WNT++
Sbjct: 90 GKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILA 149
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y D EVL L+ ++ G +DK T + AC +E + + + K GL
Sbjct: 150 YARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCN 209
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L + AL+ YA+ MD+A + SL DEI
Sbjct: 210 LFVGGALVDGYARFGWMDDA------------VTSL--------------------DEIE 237
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+V W +++ G VK EEA +F +M+ GV PD S L C +L + G+
Sbjct: 238 GTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQ 297
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH ++ D FV ALIDMY+KC E L F + ++ VTW ++I A +G
Sbjct: 298 VHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGH 357
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR--VQPTIEH 356
N+AL +F +M+ G K N S+L A I +G +L G + R + I
Sbjct: 358 FNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELH---GHLVRNLLNSDIIL 414
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
LVD+ S+ G++ +A + + + E +SY ALL+
Sbjct: 415 GSALVDMYSKCGMVEEAHQVFRSL-LERNEVSYNALLAG 452
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 198/441 (44%), Gaps = 81/441 (18%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ L + V K L+ +++VG +L+ Y R DA D++ V +WN +++ Y
Sbjct: 195 RQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKI 254
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
E +F +++ G+ D T C L GK VH G + +
Sbjct: 255 LSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVG 314
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN----------------------- 159
NAL+ MYAKC + + L++FDEMG RN V+ N +I+
Sbjct: 315 NALIDMYAKCDDEESCLKVFDEMG-ERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGY 373
Query: 160 -------GYIDMELVDLA-----REVFDEIV----DKDIVL------------------- 184
G I M LA RE+ +V + DI+L
Sbjct: 374 KSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQ 433
Query: 185 -WRSMMH-----------GCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLS 231
+RS++ G V+ + EEALEL+ M E G+ PD+ ++L+ C++
Sbjct: 434 VFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQR 493
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
N GR +H +++ NIT++ V+T L+ MYS+CG L A F + ++ +W +MIE
Sbjct: 494 NDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIE 553
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
G G EALR+F QM+ GIKP+ + S+L++C +G +L + V+
Sbjct: 554 GYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHN-----FIVR 608
Query: 352 PTIEH----FVCLVDLLSRAG 368
T+E V LVD+ ++ G
Sbjct: 609 NTMEEEGILQVVLVDMYAKCG 629
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/441 (37%), Positives = 253/441 (57%), Gaps = 2/441 (0%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
+S++ +GR + +AR +FD + +DV +W ++S + E L LF + EG
Sbjct: 204 SSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWP 263
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
D+ +V + +ACARLE G+ H A + GL LN++NAL+ MY+ + A RL
Sbjct: 264 VDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRL 323
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
FD G + S N +I GY+ V A+E+F + DKD V W +M+ GCV+ Q EA
Sbjct: 324 FDS-GQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEA 382
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L +F M +G+ PDE +VSV+SAC+++S+L+ G+ +H +I ++ T + T+LIDM
Sbjct: 383 LTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDM 442
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNEAT 320
Y KCG LE AL F + + W +I GLA GL ++L +F +ME PNE T
Sbjct: 443 YMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEIT 502
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
F VL+ACRH+GL+ EG F+ M Y + P I H+ C+VDLL RAG + +AE I+ M
Sbjct: 503 FTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESM 562
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440
P ++ ALL +C + + ++G++V ++ L + +LSN YA EG W V
Sbjct: 563 PMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVK 622
Query: 441 EARRNMKELQTRKKPGNSIID 461
+ R +MK+ K PG+S+++
Sbjct: 623 DLRGSMKQWHVPKIPGSSVVE 643
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 121/450 (26%), Positives = 188/450 (41%), Gaps = 87/450 (19%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR------------DVGSW 52
+HA + L +D + + LI F T R+L +PF + S
Sbjct: 23 IHAQFVASGLLADAFAASRLILFT------TSTRLL--PLPFHHSLRLLHVVHRPNAFSC 74
Query: 53 NTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK 112
N ++ + L L+ + D T IL +ACA + G+ VHC+A +
Sbjct: 75 NMVLKAAREHGLPHLCLPLYASM---SAAPDCYTHTILAAACATRRAIEEGRQVHCHAVR 131
Query: 113 VGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME------- 165
G L + NAL+ MY+ C + +A ++FD G + VS N ++ Y+ E
Sbjct: 132 HGFGRNLYLANALMSMYSACGCLGDARKVFDA-GPVWDAVSWNTILAAYVQAEDVDQAVG 190
Query: 166 ------------------------LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
+VD AR+VFD + KD+ W +M+ + + EA
Sbjct: 191 VFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEA 250
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L LF M EG DE VMV V++AC+ L + G + H + + V+ ALI M
Sbjct: 251 LALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHM 310
Query: 262 YS-------------------------------KCGSLEEALVTFYKTDCKDVVTWTTMI 290
YS K GS+++A F KD V+WTTMI
Sbjct: 311 YSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMI 370
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
G +EAL +F M+ +GIKP+E T VSV++AC + + +G + + ++
Sbjct: 371 SGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIRE-HQY 429
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
T+ L+D+ + G L A E M
Sbjct: 430 TITVILGTSLIDMYMKCGCLESALEVFDTM 459
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 10/199 (5%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IYNDFSDSGEVLILFKQ 74
D + NS+I Y + DA+ LF MP +D SW T++S + ND S E L +F
Sbjct: 331 DQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQND--QSSEALTIFNN 388
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+ +GI D++TLV + SAC + L GK++H Y + + + +L+ MY KC
Sbjct: 389 MQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGC 448
Query: 135 MDEALRLFDEMGSRR----NIVSLNILINGYIDMELVDLAREV-FDEIVDKDIVLWRSMM 189
++ AL +FD M R N V + + +NG + M+ +D+ E+ + + + ++
Sbjct: 449 LESALEVFDTMEERGTPCWNAVIVGLAMNGLV-MKSLDMFSEMESSSTATPNEITFTGVL 507
Query: 190 HGCVKAKQPEEALELFKKM 208
C A EE FK M
Sbjct: 508 SACRHAGLVEEGQHFFKLM 526
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 172/466 (36%), Positives = 262/466 (56%), Gaps = 4/466 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA KT D Y SL+ Y + AR +FD+MP R + WN +M Y
Sbjct: 65 GRKVHAAAVKTGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIR 124
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L Q+ G D++TLV +AC+R L+ G+ +H Y V + L +
Sbjct: 125 CGRFTAAVALAVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGV-FGFSLPV 183
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL MY K ++EA+++F++M RNI+S IL++GY +D AR F + KD
Sbjct: 184 ANALLDMYTKNGYLEEAVKMFEQM-PERNIISWTILVSGYGIAGQLDKARVFFYQCTQKD 242
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++LW SM++ CV+ EEAL LF+ M + V PD+ +V++L+ C+++ L G +H+
Sbjct: 243 LILWTSMINACVQHGSFEEALILFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQ 302
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ N+ DA + TALI+MYSKCG ++++L F + KD WT +I GLA G ++
Sbjct: 303 YAESRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQASK 362
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F +M+R KP+ TF+ VL+AC H GL+ EG + F+ M VY ++P IEH+ CLV
Sbjct: 363 ALELFEEMQRSKTKPDGITFIGVLSACCHGGLVDEGQRYFQAMKEVYHIEPRIEHYSCLV 422
Query: 362 DLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMKLG-NQS 419
+LL AGLLY+AE+ I MP D + ALL+AC ++ + + + K + +
Sbjct: 423 NLLGHAGLLYEAEKLITDMPVNNDTMPLFGALLTACKANGNVEMSEWLTKRIAKEDCSPN 482
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+ VL+SN YA W E R M +K G S+I++K Y
Sbjct: 483 PDVNVLMSNVYATASRWEEAIRVRSKMTNPAVKKTAGCSMIEVKEY 528
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 139/331 (41%), Gaps = 41/331 (12%)
Query: 44 MPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG 103
MP RD N L+ V+ ++ L G+ AD T + A ++ G
Sbjct: 9 MPLRDC---NVLIRTLARRGSFSRVMAVYYDLRARGLAADSYTYPFVLRAIGTMKLSVEG 65
Query: 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
+ VH A K G + +L+ MY D A R+FDEM R
Sbjct: 66 RKVHAAAVKTGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQRF-------------- 111
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223
+VLW MM ++ + A+ L +M G TPD +V+
Sbjct: 112 ------------------LVLWNMMMRCYIRCGRFTAAVALAVQMESGGATPDRVTLVTA 153
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
++ACS +L GR +H + + V AL+DMY+K G LEEA+ F + +++
Sbjct: 154 VTACSRAGDLNLGRRIHSY-MDGVFGFSLPVANALLDMYTKNGYLEEAVKMFEQMPERNI 212
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
++WT ++ G G ++A FYQ +K + + S++ AC G E LFR
Sbjct: 213 ISWTILVSGYGIAGQLDKARVFFYQCTQKDL----ILWTSMINACVQHGSFEEALILFRD 268
Query: 344 MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
M + RV+P V L+ + G L Q E
Sbjct: 269 M-QLQRVEPDKFTVVTLLTCCANIGALDQGE 298
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 3/185 (1%)
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ D VL A ++ GR VH ++ DA+ +L++MY+ G +
Sbjct: 40 RGLAADSYTYPFVLRAIGTMKLSVEGRKVHAAAVKTGFRWDAYTACSLMEMYTMLGRADS 99
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F + + +V W M+ G A+ + QME G P+ T V+ + AC
Sbjct: 100 ARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAVQMESGGATPDRVTLVTAVTACSR 159
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+G + G ++ M GV+ + + L+D+ ++ G L +A + + MP E IS+
Sbjct: 160 AGDLNLGRRIHSYMDGVFGFSLPVAN--ALLDMYTKNGYLEEAVKMFEQMP-ERNIISWT 216
Query: 391 ALLSA 395
L+S
Sbjct: 217 ILVSG 221
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 269/464 (57%), Gaps = 3/464 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G + HV K +D++V N+ +HF+ AR LFD+ P RDV SWNTL+ Y
Sbjct: 140 GAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVR 199
Query: 62 FSDSGEVLILFKQLIFEG--IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L LF +L +G + D++T++ S CA++ L GK +H + G+ +
Sbjct: 200 SGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTV 259
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NA++ MY KC ++ A +F+ + S R VS +I G+ + +++ AR +FDE+ +
Sbjct: 260 RLMNAVMDMYVKCGSLELANSVFERI-SNRTAVSWTTMIVGHARLGMMEDARMLFDEMPE 318
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D+ W ++M G V+ KQ +EA+ LF +M V P+E MV++LSACS L L+ G V
Sbjct: 319 RDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWV 378
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I ++ + + T+L+DMY+KCG++++A+ F + ++ +TWT+MI GLAN+G
Sbjct: 379 HHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHA 438
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+EA+ F +M G++P+E TF+ VL+AC H+GL+ G Q F M Y ++ ++H+ C
Sbjct: 439 DEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSC 498
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
++DLL RAG L +AE+ + MP + + + AL AC + LG+K A +++L
Sbjct: 499 MIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSD 558
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVLL+N YA + + R M+ L K PG S I+L
Sbjct: 559 SGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELN 602
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 174/387 (44%), Gaps = 68/387 (17%)
Query: 69 LILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLL 127
L L++ L+ G D +T L ACARL+ YG V + K+G + + NA +
Sbjct: 105 LPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMH 164
Query: 128 MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRS 187
++ M A RLFDE R++VS N LI GY
Sbjct: 165 FWSVRGPMAFARRLFDE-SPVRDVVSWNTLIGGY-------------------------- 197
Query: 188 MMHGCVKAKQPEEALELFKKMIDEG--VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
V++ P EALELF ++ ++G V PDE ++ +S C+ + +L+ G+ +H F+
Sbjct: 198 -----VRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDN 252
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL------- 298
+ + A++DMY KCGSLE A F + + V+WTTMI G A G+
Sbjct: 253 KGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARML 312
Query: 299 ------------------------GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
G EA+ +F++M++ + PNE T V++L+AC G +
Sbjct: 313 FDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGAL 372
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
G + + +++ ++ LVD+ ++ G + +A +P ++ +++ +++
Sbjct: 373 EMGMWVHHYIDR-HKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNA-LTWTSMIC 430
Query: 395 ACITYSEFDLGKKVANNMMKLGNQSHE 421
+ D + M+ LG Q E
Sbjct: 431 GLANHGHADEAIEYFQRMIDLGLQPDE 457
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 148/343 (43%), Gaps = 78/343 (22%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFY-------------------------------G 29
+GK LH V + + + N+++ Y
Sbjct: 242 LGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHA 301
Query: 30 RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
R+ + DAR+LFD+MP RDV WN LM+ Y E + LF ++ + ++IT+V
Sbjct: 302 RLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVN 361
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L SAC++L L G VH Y + L + + +L+ MYAKC + +A+
Sbjct: 362 LLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAIC--------- 412
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
VF+EI ++ + W SM+ G +EA+E F++MI
Sbjct: 413 -----------------------VFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMI 449
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGR----LVH-RFILQNNITQDAFVKTALIDMYSK 264
D G+ PDE + VLSAC ++ GR L+H ++ L+ + + +ID+ +
Sbjct: 450 DLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKH----YSCMIDLLGR 505
Query: 265 CGSLEEA--LVTFYKTDCKDVVTWTTMIEGLANYG---LGNEA 302
G L+EA LV D D V W + +G LG +A
Sbjct: 506 AGHLDEAEQLVNAMPMD-PDAVVWGALFFACRMHGNITLGEKA 547
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/462 (35%), Positives = 267/462 (57%), Gaps = 2/462 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G + +V +D++V N+ +HF + +AR LFD RD+ SWNTL+ Y
Sbjct: 139 GNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVR 198
Query: 62 FSDSGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L +F +++ +G + D++T++ + S A+L L G+ +H Y G+ +
Sbjct: 199 RGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVR 258
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N ++ MY KC +++ A +F+ + ++ IVS +I GY L+D AR+VFDE+ ++
Sbjct: 259 LMNVVMDMYIKCGDLERAKSVFEGI-DKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPER 317
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+ W ++M G V+ K+ +EAL LF M + V PD+ MV++LSACS L L+ G VH
Sbjct: 318 DVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVH 377
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I + ++ + T L+DMYSKCG++E+A+ F + K+ +TWT MI GLAN+G +
Sbjct: 378 HYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHAD 437
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A++ F +M G++P+E TF+ VL+AC H+GL+ EG + F M Y ++ ++H+ C+
Sbjct: 438 VAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCM 497
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +AE + MP E + + AL AC + LG+K A +++L
Sbjct: 498 VDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPGDS 557
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL+N YA + + R M+ L K PG S I+L
Sbjct: 558 GIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIEL 599
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 186/413 (45%), Gaps = 72/413 (17%)
Query: 45 PFRDVGSWNTLMSIYNDFSDSGEV---LILFKQLIFEGIVADKITLVILFSACARLEKLH 101
P +N + + +D G V L L+ L+ D +T L ACARL++ +
Sbjct: 79 PPDSASPYNAALRALSLCTDRGLVTRCLPLYCSLL-RSARPDHLTFPFLLKACARLQERN 137
Query: 102 YGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR-RNIVSLNILING 160
YG V +G + + NA + A C M EA +LFD GS R++VS N LI G
Sbjct: 138 YGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFD--GSHVRDLVSWNTLIGG 195
Query: 161 YIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEV 219
Y V+ P EALE+F +M+ +G VTPDE
Sbjct: 196 Y-------------------------------VRRGVPREALEMFWRMVGDGAVTPDEVT 224
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279
M+ V+S + L +L+ GR +H ++ + + + ++DMY KCG LE A F D
Sbjct: 225 MIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGID 284
Query: 280 CKDVVTWTTMIEGLANYGL-------------------------------GNEALRVFYQ 308
K +V+WTTMI G A +GL G EALR+F+
Sbjct: 285 KKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHD 344
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
M+ ++P++ T V++L+AC G + G + + RV ++ LVD+ S+ G
Sbjct: 345 MQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDR-RRVSLSVMLGTNLVDMYSKCG 403
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
+ +A K +P E +++ A++S + D+ K M++LG Q E
Sbjct: 404 NIEKAIRVFKEIP-EKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDE 455
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 68/146 (46%), Gaps = 1/146 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG +H ++ + + + +G +L+ Y + A +F ++P ++ +W ++S
Sbjct: 372 MGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLA 431
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-VHCYATKVGLEYML 119
+ + + F+++I G+ D+IT + + SAC + G+ +K LE +
Sbjct: 432 NHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKM 491
Query: 120 NMENALLLMYAKCKEMDEALRLFDEM 145
+ ++ + + +DEA L + M
Sbjct: 492 KHYSCMVDLLGRAGYLDEAEHLVNTM 517
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 162/460 (35%), Positives = 258/460 (56%), Gaps = 3/460 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDA--RVLFDKMPFRDVGSWNTLMSIYNDF 62
+H + K + ++L+ Y R+ L A RV+FD + + WNT++ Y++
Sbjct: 29 IHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSNS 88
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+D L+L+ Q++ + + T L AC+ L + +H + K G +
Sbjct: 89 NDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYAT 148
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N+LL +YA + A LF+++ +R +IVS NI+I+GYI +D+A ++F + +K++
Sbjct: 149 NSLLRVYAISGNIQSAHVLFNQLPTR-DIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNV 207
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
+ W +M+ G V+ +EAL L ++M+ G+ PD + LSAC+ L L+ G+ +H +
Sbjct: 208 ISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTY 267
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
I +N I D + L DMY KCG +E+AL+ F K + K V WT +I GLA +G G EA
Sbjct: 268 IEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREA 327
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L F QM++ GI PN TF ++L AC H+GL EG LF M VY ++P++EH+ C+VD
Sbjct: 328 LDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVD 387
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
L+ RAGLL +A EFI+ MP + + ALL+AC + F+LGK++ +++L
Sbjct: 388 LMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKILIELDPDHSGR 447
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+ L++ YA G W +V R +K PG S I L
Sbjct: 448 YIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITL 487
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 36/243 (14%)
Query: 131 KCKEMDEALRLFDEM---GSRRNIVSLNILINGYIDMELVDLA--REVFDEIVDKDIVLW 185
+C M E +++ ++ G+ RN ++++ L+ Y +ELV+LA R VFD I + V+W
Sbjct: 19 RCSNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIW 78
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+M+ + PE AL L+ +M+ V + +L ACS+LS + + +H I++
Sbjct: 79 NTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIK 138
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD----------------------- 282
+ + +L+ +Y+ G+++ A V F + +D
Sbjct: 139 RGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKI 198
Query: 283 --------VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
V++WTTMI G G+ EAL + QM GIKP+ T L+AC G +
Sbjct: 199 FQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGAL 258
Query: 335 TEG 337
+G
Sbjct: 259 EQG 261
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 74/185 (40%), Gaps = 9/185 (4%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H ++ K + D +G L Y + A ++F K+ + V +W ++
Sbjct: 261 GKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAI 320
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-----HCYATKVGLE 116
E L F Q+ GI + IT + +AC+ GK++ Y K +E
Sbjct: 321 HGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSME 380
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ ++ + + + EA + M + N L+N + +L +E+
Sbjct: 381 HY----GCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKI 436
Query: 177 IVDKD 181
+++ D
Sbjct: 437 LIELD 441
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 173/465 (37%), Positives = 261/465 (56%), Gaps = 4/465 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGS---WNTLMS 57
+G +HAHV K ++ + +V +SL+ Y AR L D P R + WN L+S
Sbjct: 37 VGDAVHAHVVKFGMELNAHVASSLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALIS 96
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ F ++ G+V +T + + SAC + + + G VH G+
Sbjct: 97 GHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLP 156
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L + NAL+ MYA+C EMD A LF+ M RN VS +I+G++ + VD AR +FD +
Sbjct: 157 DLKVGNALIDMYAECSEMDAAWELFEGM-EVRNTVSWTSVISGFLRLGQVDQARTLFDCM 215
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
++D V W +M+ G V+A Q EALE+F++M V DE MVSV++AC+ L L+ G
Sbjct: 216 PERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGE 275
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
++ ++ I D FV AL+DMYSKCGS+++AL F + +D TWT +I GLA G
Sbjct: 276 WARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNG 335
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G EA+ +FY+M R P+E TF+ VL AC H+GL+ +G F M G Y + P + HF
Sbjct: 336 HGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHF 395
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
CL+DLL RAG L +A E I MP + LL+AC + ++G+ A ++++L
Sbjct: 396 GCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDT 455
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ Y+LLSN YA W +V R+ + E +K+PG S+I++
Sbjct: 456 ENGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEM 500
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 149/366 (40%), Gaps = 70/366 (19%)
Query: 68 VLILFKQLIFEGIVADKITLVILFSA-CARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
+L ++ ++ G D T L A A E+ G VH + K G+E ++ ++L+
Sbjct: 2 LLRVYVGMLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLV 61
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
LMYA + A L D +R V+W
Sbjct: 62 LMYAARGDGAVARTLLDAWPARGGDTP-----------------------------VVWN 92
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
+++ G +++Q + F M+ GV P ++VLSAC + G VH+ ++ +
Sbjct: 93 ALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVAS 152
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKT---------------------------- 278
+ D V ALIDMY++C ++ A F
Sbjct: 153 GVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLF 212
Query: 279 DC---KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335
DC +D V+WT MI+G G EAL +F +M+ ++ +E T VSV+ AC G +
Sbjct: 213 DCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALE 272
Query: 336 EG--CQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKA 391
G +++ G+ ++ FV LVD+ S+ G + QA K M DKF
Sbjct: 273 TGEWARIYMSRHGI-----KMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAV 327
Query: 392 LLSACI 397
+L +
Sbjct: 328 ILGLAV 333
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 161/457 (35%), Positives = 271/457 (59%), Gaps = 1/457 (0%)
Query: 7 AHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSG 66
HV + DSD++V N++IH AR LFD+ RD+ SWN++++ Y +
Sbjct: 179 GHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLAD 238
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
E L+ ++ ++ D++T++ + SA A+LE L G+ +H ++GL + + NAL+
Sbjct: 239 EAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALM 298
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
MY KCK ++ A LF+ M +++ +VS ++ GY L++ A +F+E+ +KD+VLW
Sbjct: 299 DMYIKCKNIEAAKILFENM-TKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWN 357
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
+++ G V+AK+ +EAL LF +M V PD+ +V+ LSACS L L G +H ++ ++
Sbjct: 358 ALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKH 417
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
N+T + + TAL+DMY+KCG++++A+ F + ++ +TWT +I GLA +G + A+ F
Sbjct: 418 NLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYF 477
Query: 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366
+M G+ P+E TF+ VL+AC H GL+ +G F +M Y + P ++H+ CLVDLL R
Sbjct: 478 SEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGR 537
Query: 367 AGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLL 426
AG L +AEE I+ MP E + + AL + +G++ A+ +++L YVLL
Sbjct: 538 AGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLL 597
Query: 427 SNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+N Y W + + R+ M+E K PG S I++
Sbjct: 598 ANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMN 634
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 108/450 (24%), Positives = 195/450 (43%), Gaps = 72/450 (16%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG----RMALFTDARVLFDKMPFRDVGSWNTLMSI 58
K +HA + T L SD + + L+ F R + D + + + SWN +
Sbjct: 71 KEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDK--ILNNAANLNXFSWNMAIRG 128
Query: 59 YNDFSDSGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y + + ++L++ ++ +G + D T +LF CA + + ++G +
Sbjct: 129 YVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDS 188
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L + NA++ + C E+ A +LFDE R++VS N +INGY+ L D
Sbjct: 189 DLFVHNAIIHVLVSCGELLAARKLFDE-SCVRDLVSWNSIINGYVRCGLAD--------- 238
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
EA +L+ KM + V PDE M+ V+SA + L NL GR
Sbjct: 239 ----------------------EAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGR 276
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H+ I + + + AL+DMY KC ++E A + F K VV+WTTM+ G A +G
Sbjct: 277 KLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFG 336
Query: 298 L-------------------------------GNEALRVFYQMERKGIKPNEATFVSVLA 326
L EAL +F++M+ + P++ T V+ L+
Sbjct: 337 LLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLS 396
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC G + G + + + + + LVD+ ++ G + +A + + MP +
Sbjct: 397 ACSQLGALDVGIWMHHYVDK-HNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNS- 454
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLG 416
+++ A++ + + + M+ +G
Sbjct: 455 LTWTAIICGLALHGQPHAAISYFSEMISIG 484
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 136/331 (41%), Gaps = 67/331 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH + + L+ + + N+L+ Y + A++LF+ M + V SW T++ Y
Sbjct: 274 LGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYA 333
Query: 61 DFS-------------------------------DSGEVLILFKQLIFEGIVADKITLVI 89
F S E L LF ++ + DKIT+V
Sbjct: 334 KFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVN 393
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
SAC++L L G +H Y K L + + AL+ MYAKC + +A+++F+EM R
Sbjct: 394 CLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRN 453
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
++ W +++ G QP A+ F +MI
Sbjct: 454 SLT--------------------------------WTAIICGLALHGQPHAAISYFSEMI 481
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
G+ PDE + VLSAC + GR ++ + I+ + L+D+ + G L
Sbjct: 482 SIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFL 541
Query: 269 EEA--LVTFYKTDCKDVVTWTTMIEGLANYG 297
EEA L+ + D V W + G +G
Sbjct: 542 EEAEELIRSMPFE-PDAVVWGALFFGSRIHG 571
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 112/254 (44%), Gaps = 23/254 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H +V K L ++ +G +L+ Y + A +F++MP R+ +W ++
Sbjct: 406 VGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLA 465
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-VHCYATKVGLEYML 119
+ F ++I G+V D+IT + + SAC + G+ + +K G+ L
Sbjct: 466 LHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKL 525
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNIL-----INGYIDMELVDLAREVF 174
+ L+ + + ++EA L M + V L I+G + M ++ +
Sbjct: 526 KHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLE 585
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV--TPDEEVMVSVLSACSSLSN 232
+ D I + + M+G A E+A ++ K M + GV TP CSS
Sbjct: 586 LDPHDGGIYVLLANMYG--DANMWEQARKVRKMMEERGVEKTP----------GCSS--- 630
Query: 233 LQYGRLVHRFILQN 246
++ LV+ FI+++
Sbjct: 631 IEMNGLVYDFIIRD 644
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 161/457 (35%), Positives = 271/457 (59%), Gaps = 1/457 (0%)
Query: 7 AHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSG 66
HV + DSD++V N++IH AR LFD+ RD+ SWN++++ Y +
Sbjct: 179 GHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLAD 238
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
E L+ ++ ++ D++T++ + SA A+LE L G+ +H ++GL + + NAL+
Sbjct: 239 EAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALM 298
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
MY KCK ++ A LF+ M +++ +VS ++ GY L++ A +F+E+ +KD+VLW
Sbjct: 299 DMYIKCKNIEAAKILFENM-TKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWN 357
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
+++ G V+AK+ +EAL LF +M V PD+ +V+ LSACS L L G +H ++ ++
Sbjct: 358 ALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKH 417
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
N+T + + TAL+DMY+KCG++++A+ F + ++ +TWT +I GLA +G + A+ F
Sbjct: 418 NLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYF 477
Query: 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366
+M G+ P+E TF+ VL+AC H GL+ +G F +M Y + P ++H+ CLVDLL R
Sbjct: 478 SEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGR 537
Query: 367 AGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLL 426
AG L +AEE I+ MP E + + AL + +G++ A+ +++L YVLL
Sbjct: 538 AGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLL 597
Query: 427 SNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+N Y W + + R+ M+E K PG S I++
Sbjct: 598 ANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMN 634
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/450 (24%), Positives = 196/450 (43%), Gaps = 72/450 (16%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG----RMALFTDARVLFDKMPFRDVGSWNTLMSI 58
K +HA + T L SD + + L+ F R + D + + +V SWN +
Sbjct: 71 KEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDK--ILNNAANLNVFSWNMAIRG 128
Query: 59 YNDFSDSGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y + + ++L++ ++ +G + D T +LF CA + + ++G +
Sbjct: 129 YVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDS 188
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L + NA++ + C E+ A +LFDE R++VS N +INGY+ L D
Sbjct: 189 DLFVHNAIIHVLVSCGELLAARKLFDE-SCVRDLVSWNSIINGYVRCGLAD--------- 238
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
EA +L+ KM + V PDE M+ V+SA + L NL GR
Sbjct: 239 ----------------------EAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGR 276
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H+ I + + + AL+DMY KC ++E A + F K VV+WTTM+ G A +G
Sbjct: 277 KLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFG 336
Query: 298 L-------------------------------GNEALRVFYQMERKGIKPNEATFVSVLA 326
L EAL +F++M+ + P++ T V+ L+
Sbjct: 337 LLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLS 396
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC G + G + + + + + LVD+ ++ G + +A + + MP +
Sbjct: 397 ACSQLGALDVGIWMHHYVDK-HNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNS- 454
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLG 416
+++ A++ + + + M+ +G
Sbjct: 455 LTWTAIICGLALHGQPHAAISYFSEMISIG 484
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 136/331 (41%), Gaps = 67/331 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH + + L+ + + N+L+ Y + A++LF+ M + V SW T++ Y
Sbjct: 274 LGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYA 333
Query: 61 DFS-------------------------------DSGEVLILFKQLIFEGIVADKITLVI 89
F S E L LF ++ + DKIT+V
Sbjct: 334 KFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVN 393
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
SAC++L L G +H Y K L + + AL+ MYAKC + +A+++F+EM R
Sbjct: 394 CLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRN 453
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
++ W +++ G QP A+ F +MI
Sbjct: 454 SLT--------------------------------WTAIICGLALHGQPHAAISYFSEMI 481
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
G+ PDE + VLSAC + GR ++ + I+ + L+D+ + G L
Sbjct: 482 SIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFL 541
Query: 269 EEA--LVTFYKTDCKDVVTWTTMIEGLANYG 297
EEA L+ + D V W + G +G
Sbjct: 542 EEAEELIRSMPFE-PDAVVWGALFFGSRIHG 571
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 112/254 (44%), Gaps = 23/254 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H +V K L ++ +G +L+ Y + A +F++MP R+ +W ++
Sbjct: 406 VGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLA 465
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-VHCYATKVGLEYML 119
+ F ++I G+V D+IT + + SAC + G+ + +K G+ L
Sbjct: 466 LHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKL 525
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNIL-----INGYIDMELVDLAREVF 174
+ L+ + + ++EA L M + V L I+G + M ++ +
Sbjct: 526 KHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLE 585
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV--TPDEEVMVSVLSACSSLSN 232
+ D I + + M+G A E+A ++ K M + GV TP CSS
Sbjct: 586 LDPHDGGIYVLLANMYG--DANMWEQARKVRKMMEERGVEKTP----------GCSS--- 630
Query: 233 LQYGRLVHRFILQN 246
++ LV+ FI+++
Sbjct: 631 IEMNGLVYDFIIRD 644
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 178/500 (35%), Positives = 280/500 (56%), Gaps = 42/500 (8%)
Query: 3 KGLHAHVTKT--ALDSDIYVGNSLIHFYGRMALFTDAR---VLFDKMPFRDVGSWNTLM- 56
K +HA + KT + D+ + + L + +L D R L ++ ++ +N ++
Sbjct: 54 KQIHASIIKTMPSPDAQLTISTRLSALCAQ-SLPIDPRYALSLLAQLRTPNLPLYNAIIR 112
Query: 57 SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
+ +DS E L+++KQ++ +GIV D T+ + ACA + G+ VH A K+GL
Sbjct: 113 GLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLA 172
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM------------ 164
+ + N L+ MYA C + A ++FD +R++VS +I GY+ M
Sbjct: 173 SDVYVSNTLMRMYAVCDVIRSARKVFDT-SPQRDLVSWTTMIQGYVKMGFAREGVGLYII 231
Query: 165 -------------ELVDL---------AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
LVD+ AR+VF E+ K++V W SM+ G + Q +E+L
Sbjct: 232 RNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESL 291
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
+F+KM GV PD+ +V+VL++C++L L+ G+ VH ++ +N I D F+ AL+DMY
Sbjct: 292 YMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMY 351
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
+KCGS+++A F + KDV ++T MI GLA +G G +AL +F +M + GI+P+E TFV
Sbjct: 352 AKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFV 411
Query: 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382
VL AC H GL+ EG + F M +Y ++P +EH+ C+VDLL RAGL+ +AEEFI+ MP
Sbjct: 412 GVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPI 471
Query: 383 EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442
E ALL AC + + +LG+ V + K+ + AYVL+SN Y+ W + +
Sbjct: 472 EPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKL 531
Query: 443 RRNMKELQTRKKPGNSIIDL 462
R+ MKE K PG S I+L
Sbjct: 532 RKTMKERNLEKTPGCSSIEL 551
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 168/380 (44%), Gaps = 70/380 (18%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G GL+ + + ++ D++VGN+L+ Y + AR +F +MP ++V SWN+++S
Sbjct: 225 GVGLYI-IRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQ 283
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L +F+++ G+ D +TLV + ++CA L L GK VH Y + + +
Sbjct: 284 KGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFI 343
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MYAKC +D+A +F M +R+++ S +I G
Sbjct: 344 GNALVDMYAKCGSIDQACWVFQAM-NRKDVYSYTAMIVGL-------------------- 382
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
MHG Q +AL+LF +M G+ PDE V VL+ACS + ++ GR
Sbjct: 383 ------AMHG-----QGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGR---- 427
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
E + T Y + + M++ L GL NE
Sbjct: 428 -------------------------KYFEDMSTIYNLR-PQLEHYGCMVDLLGRAGLINE 461
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE-HFVCL 360
A M I+P+ ++L AC+ G + G + ++ + +++P + +V +
Sbjct: 462 AEEFIRNMP---IEPDAFVLGALLGACKIHGKVELGESVMKK---IEKIEPRKDGAYVLM 515
Query: 361 VDLLSRAGLLYQAEEFIKIM 380
++ S A A + K M
Sbjct: 516 SNIYSSANRWRDALKLRKTM 535
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 55/104 (52%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA++ + + +D ++GN+L+ Y + A +F M +DV S+ ++
Sbjct: 324 LGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLA 383
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
G+ L LF ++ GI D++T V + +AC+ + + G+
Sbjct: 384 MHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGR 427
>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
Length = 1287
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 172/488 (35%), Positives = 261/488 (53%), Gaps = 32/488 (6%)
Query: 5 LHAHVTKTALDSDI-YVGNSLIHFY-------------------------------GRMA 32
LHA +T L S +V NSLIH Y +M
Sbjct: 67 LHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMG 126
Query: 33 LFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFS 92
+ +DAR+L + P RDV SW +L++ Y+ + E + FK ++ EGI D +T++ + S
Sbjct: 127 MLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLS 186
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
AC++L+ L G ++H + G+ N+ AL+ MYAKC + A +FD +G R
Sbjct: 187 ACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQ 246
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
S N +I+GY VD+AR +FD++ +DI+ + SM+ G + + Q EAL LF M
Sbjct: 247 SWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHD 306
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ D +VS+LSAC+SL L GR +H I + D ++ TAL+DMY KCG + EA
Sbjct: 307 LRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEAT 366
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
+ F + +DV WT MI GLA G+G L FYQM G +PN ++++VL AC HS
Sbjct: 367 IVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSC 426
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392
L+ EG F M +Y + P IEH+ C++DLL R+GLL +A + +K MP + + + ++
Sbjct: 427 LLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASI 486
Query: 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
LSAC + DL + A +++K+ YV L N W + ++ R M+E Q +
Sbjct: 487 LSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVK 546
Query: 453 KKPGNSII 460
K G S +
Sbjct: 547 KTAGYSSV 554
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 128/470 (27%), Positives = 221/470 (47%), Gaps = 43/470 (9%)
Query: 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ LH V K + S+I++ NSL+ Y + D + + DV SWN+++S+Y
Sbjct: 852 GRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYA 911
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE-YML 119
D E + KQ+++ G + + V L + + G +H K+G +
Sbjct: 912 DRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSV 971
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+++ L+ MY KC D +L +F+E+ S +A E + ++
Sbjct: 972 HVQTTLIDMYGKCCCFDHSLAIFNEIPS---------------------IALECCNSLIT 1010
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV-----LSACSSLSNLQ 234
+ GC + ALE+ MI EGVTPD+ + LSA SL++ Q
Sbjct: 1011 SSL--------GC---NMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQ 1059
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
++H +++ D V ++LI Y+ G L + + F +V+ +T +I A
Sbjct: 1060 ---MLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACA 1116
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
YG G A+ +F QM G+KP+ TF+ +A C +G+ EG + M + P
Sbjct: 1117 RYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDE 1176
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
HF C+V+LLSR G + +A E ++ P ++ +LL +C + E LGK+ AN ++
Sbjct: 1177 RHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLID 1236
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+G + + +SNF+ G E A + M ++ KK G+S+I++ H
Sbjct: 1237 VGRKDPATTLQVSNFFNDIGD-RETALRIKEMTNVKEVKKSGHSLIEVSH 1285
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 124/255 (48%), Gaps = 27/255 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IY 59
G+ LHA + +++DIY+G +L+ Y + +A ++F +M RDV +W +++ +
Sbjct: 330 GRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAF 389
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N +G L F Q+ +G + ++ + + +AC+ L+ G+ Y ++ + Y +
Sbjct: 390 NGMGKAG--LEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRL---YFDEMRILYNI 444
Query: 120 NME----NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ + ++ + + +DEA+ L M + N V +++ + +DLA+ +
Sbjct: 445 HPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAE 504
Query: 176 EIV----DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
++ D+D V + + + C+ +++ E+A ++ M EE V + SS++
Sbjct: 505 HLLKIEPDEDAV-YVQLYNICIDSRKWEDASKIRMLM--------EERQVKKTAGYSSVT 555
Query: 232 NLQYGRLVHRFILQN 246
VH+F++ +
Sbjct: 556 ---VAGQVHKFVVSD 567
>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
Length = 1349
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 172/488 (35%), Positives = 261/488 (53%), Gaps = 32/488 (6%)
Query: 5 LHAHVTKTALDSDI-YVGNSLIHFY-------------------------------GRMA 32
LHA +T L S +V NSLIH Y +M
Sbjct: 129 LHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMG 188
Query: 33 LFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFS 92
+ +DAR+L + P RDV SW +L++ Y+ + E + FK ++ EGI D +T++ + S
Sbjct: 189 MLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLS 248
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
AC++L+ L G ++H + G+ N+ AL+ MYAKC + A +FD +G R
Sbjct: 249 ACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQ 308
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
S N +I+GY VD+AR +FD++ +DI+ + SM+ G + + Q EAL LF M
Sbjct: 309 SWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHD 368
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ D +VS+LSAC+SL L GR +H I + D ++ TAL+DMY KCG + EA
Sbjct: 369 LRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEAT 428
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
+ F + +DV WT MI GLA G+G L FYQM G +PN ++++VL AC HS
Sbjct: 429 IVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSC 488
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392
L+ EG F M +Y + P IEH+ C++DLL R+GLL +A + +K MP + + + ++
Sbjct: 489 LLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASI 548
Query: 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
LSAC + DL + A +++K+ YV L N W + ++ R M+E Q +
Sbjct: 549 LSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVK 608
Query: 453 KKPGNSII 460
K G S +
Sbjct: 609 KTAGYSSV 616
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 127/470 (27%), Positives = 221/470 (47%), Gaps = 43/470 (9%)
Query: 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ LH V K + S+I++ NSL+ Y + D + + DV SWN+++S+Y
Sbjct: 914 GRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYA 973
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE-YML 119
D E + KQ+++ G + + V L + + G +H K+G +
Sbjct: 974 DRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSV 1033
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+++ L+ MY KC D +L +F+E+ S I +E +
Sbjct: 1034 HVQTTLIDMYGKCCCFDHSLAIFNEIPS--------------IALECCN----------- 1068
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV-----LSACSSLSNLQ 234
S++ ++ + ALE+ MI EGVTPD+ + LSA SL++ Q
Sbjct: 1069 -------SLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQ 1121
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
++H +++ D V ++LI Y+ G L + + F +V+ +T +I A
Sbjct: 1122 ---MLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACA 1178
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
YG G A+ +F QM G+KP+ TF+ +A C +G+ EG + M + P
Sbjct: 1179 RYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDE 1238
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
HF C+V+LLSR G + +A E ++ P ++ +LL +C + E LGK+ AN ++
Sbjct: 1239 RHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLID 1298
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+G + + +SNF+ G E A + M ++ KK G+S+I++ H
Sbjct: 1299 VGRKDPATTLQVSNFFNDIGD-RETALRIKEMTNVKEVKKSGHSLIEVSH 1347
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 100/382 (26%), Positives = 178/382 (46%), Gaps = 56/382 (14%)
Query: 5 LHAHVTKTA----LDSDIYVGNSLIH-------FYGRMALFTDARVLFDKMPFRDVGSWN 53
LHAH+T + S ++ NSL++ + R AL LFD+MP
Sbjct: 18 LHAHLTTSGRLLHPPSAHHLLNSLVNCLPPSDPLHLRYALH-----LFDRMPASTFLFDT 72
Query: 54 TLMSIYNDFSDSGEV---LILFKQLIFEGIVADKITLVILF--SACARLEKLHYGKTVHC 108
L + + + SG+ +LF+++ + D T LF S+ +R L +H
Sbjct: 73 ALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRAL-LCTMLHA 131
Query: 109 YATKVGLEYMLN-MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
+ L + N+L+ MY + + R FDE+ ++ VS ++I+G M ++
Sbjct: 132 ACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEI-PVKDAVSWTMVISGLAKMGML 190
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227
AR + + +D++ W S++ +A + +EA++ FK M+ EG+ PD+ ++ VLSAC
Sbjct: 191 SDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSAC 250
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS-------------------- 267
S L +L+ G +H + + ++ + ALIDMY+KCG
Sbjct: 251 SQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSW 310
Query: 268 ------------LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
++ A F + + +D++T+ +MI G + G EAL +F M R ++
Sbjct: 311 NAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLR 370
Query: 316 PNEATFVSVLAACRHSGLITEG 337
+ T VS+L+AC G + +G
Sbjct: 371 VDNFTVVSLLSACASLGALPQG 392
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 124/255 (48%), Gaps = 27/255 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IY 59
G+ LHA + +++DIY+G +L+ Y + +A ++F +M RDV +W +++ +
Sbjct: 392 GRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAF 451
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N +G L F Q+ +G + ++ + + +AC+ L+ G+ Y ++ + Y +
Sbjct: 452 NGMGKAG--LEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRL---YFDEMRILYNI 506
Query: 120 NME----NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ + ++ + + +DEA+ L M + N V +++ + +DLA+ +
Sbjct: 507 HPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAE 566
Query: 176 EIV----DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
++ D+D V + + + C+ +++ E+A ++ M EE V + SS++
Sbjct: 567 HLLKIEPDEDAV-YVQLYNICIDSRKWEDASKIRMLM--------EERQVKKTAGYSSVT 617
Query: 232 NLQYGRLVHRFILQN 246
VH+F++ +
Sbjct: 618 ---VAGQVHKFVVSD 629
>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
Length = 723
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 162/488 (33%), Positives = 267/488 (54%), Gaps = 32/488 (6%)
Query: 5 LHAHVTKTALDSDI-YVGNSLIHFYGRMALFTDARVLFDKMPFRD--------------- 48
LHA +T L S V N LIH Y + L DAR FD++P +D
Sbjct: 124 LHAACLRTMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWG 183
Query: 49 ----------------VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFS 92
V SW +L++ Y+ + + F ++ +G+ D++ ++ S
Sbjct: 184 LLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALS 243
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
AC++L+ L +G+ +H K ++ + L+ MYAKC ++ +A +FD +G +
Sbjct: 244 ACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPE 303
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
N++I+GY + VD+AR +FD++ +D++ + SM+ G + + + +AL+LF ++ G
Sbjct: 304 PWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHG 363
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ D +VS+L+AC+SL L GR +H I Q + +D ++ TAL+DMY KCG ++EA
Sbjct: 364 MRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEAT 423
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F++ +DV TW+ MI GLA G+G +AL F QM+R G +P T+++VL AC HS
Sbjct: 424 AVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSS 483
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392
L+ EG Q F M ++++ P IEH+ C++DLL+R+GLL +A ++ MP + + + ++
Sbjct: 484 LLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWASI 543
Query: 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
LSAC + DL + A +++KL + YV L N Y W E R M+E +
Sbjct: 544 LSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWVEAKRIRMLMEEQGVK 603
Query: 453 KKPGNSII 460
K G S I
Sbjct: 604 KTAGYSSI 611
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 89/222 (40%), Gaps = 33/222 (14%)
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDA-FVKTALIDMYSKCGSLEEALVTFYKTDCK 281
V C++ + R++H L+ + A V LI MY+ G ++A F + K
Sbjct: 108 VFRCCAAGAGAGLCRMLHAACLRTMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVK 167
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERK----------------------------- 312
D V W T+I GL +GL +EA R+ Q +
Sbjct: 168 DAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCML 227
Query: 313 --GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370
G++P+E + L+AC + G +L + G R+Q T + V L+D+ ++ G +
Sbjct: 228 SDGVEPDEVAVIGALSACSKLKNLEFG-RLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDI 286
Query: 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
QA+ + K + ++ D+ + + + M
Sbjct: 287 AQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQM 328
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 86/180 (47%), Gaps = 5/180 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHA + + ++ D+Y+ +L+ Y + +A +F +M RDV +W+ +++
Sbjct: 387 GRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLA- 445
Query: 62 FSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV--GLEYM 118
F+ G + L F Q+ +G +T + + +AC+ L+ G+ H + L
Sbjct: 446 FNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQ-HFNEMRSLHKLHPQ 504
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ ++ + A+ +DEA+ L M + N V +++ + +DLAR + ++
Sbjct: 505 IEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLL 564
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 182/468 (38%), Positives = 271/468 (57%), Gaps = 11/468 (2%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP-FRDVGSWNTLMSIYND 61
K +HA V L + + LIH Y + AR++FD+ P WN ++ Y+
Sbjct: 72 KQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSK 131
Query: 62 FSDSGEVLILFKQLIFEG--IVADKITLVILFSACARLEKLH-YGKTVHCYATKVGLEYM 118
S E L LF Q++ G ADK T +F+AC+R L YG+ VH K G E
Sbjct: 132 TPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESD 191
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY-IDMELVDLAREVFDEI 177
+ + N+L+ MY+ M +A R+FDEM +R++++ ++ GY + ELV ARE+FD +
Sbjct: 192 IFVGNSLVNMYSIFSRMVDAKRVFDEM-PQRDVITWTSVVKGYAMRGELVR-ARELFDMM 249
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMI--DEGVTPDEEVMVSVLSACSSLSNLQY 235
++ V W M+ G V + EAL+ F M+ DE V P+E V+VS+LSAC+ L L
Sbjct: 250 PGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDE-VKPNEAVLVSILSACAHLGALDQ 308
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G+ +H +I +N I + + TALIDMY+KCG ++ A F +D++TWT+MI GL+
Sbjct: 309 GKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSM 368
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
+GLG E L F +M +G KP++ T + VL C HSGL+ EG +F M ++ + P +E
Sbjct: 369 HGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLE 428
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
H+ CL+DLL RAG L A E IK MP E ++++ALLSAC + + DLG+++ N++ +L
Sbjct: 429 HYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAEL 488
Query: 416 GNQSH-EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
SH YVLLSN YA G W V + R+ M + + PG S I++
Sbjct: 489 CPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEI 536
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 137/330 (41%), Gaps = 66/330 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ +H V K +SDI+VGNSL++ Y + DA+ +FD+MP RDV +W +++ Y
Sbjct: 176 GENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAM 235
Query: 60 -----------------NDFSDS------------GEVLILFKQLI-FEGIVADKITLVI 89
ND S + E L F ++ + + ++ LV
Sbjct: 236 RGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVS 295
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA L L GK +H Y K + N+ AL+ MYAKC +D A R+FD + R
Sbjct: 296 ILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKR- 354
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D++ W SM+ G E L F +M+
Sbjct: 355 -------------------------------DLLTWTSMISGLSMHGLGAECLWTFSEML 383
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
EG PD+ ++ VL+ CS ++ G + H I I LID+ + G L
Sbjct: 384 AEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRL 443
Query: 269 EEALVTFYKTDCK-DVVTWTTMIEGLANYG 297
E A + DVV W ++ +G
Sbjct: 444 ESAFEAIKSMPMEPDVVAWRALLSACRIHG 473
>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 887
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/462 (33%), Positives = 256/462 (55%), Gaps = 31/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H K L +++ G SL Y + A++ F ++ D+ SWN +++ + D
Sbjct: 381 GKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFAD 440
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D+ E + F+Q+I G+ D IT + L C +L+ G+ +H Y K+G + + +
Sbjct: 441 NGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITV 500
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+LL MY KC + +AL +F ++ N+VS
Sbjct: 501 CNSLLTMYTKCSHLHDALNVFRDISRNANLVS---------------------------- 532
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
W +++ C++ KQ E L+K+M G PD + ++L C+ L++L G VH
Sbjct: 533 ---WNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHC 589
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ +++ + D V LIDMY+KCGSL+ A F T D+V+W+++I G A GLG+E
Sbjct: 590 YSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHE 649
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M G++PNE T++ L+AC H GL+ EG +L++ M + + PT EHF C+V
Sbjct: 650 ALNLFRIMTNLGVQPNEVTYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCIV 709
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL+RAG L++AE FI+ + ++K LL+AC T++ D+ ++ A N++KL +
Sbjct: 710 DLLARAGCLHEAETFIQKSGLDADITAWKTLLAACKTHNNVDIAERGAGNILKLDPSNSA 769
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A V+L N +A G+W EVA+ R+ MK++ +K PG S I++K
Sbjct: 770 AMVMLCNIHASAGNWEEVAKLRKLMKQMGVQKVPGQSWIEVK 811
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 190/399 (47%), Gaps = 38/399 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +H HV K+ I + N +I+ YG+ DAR +FD M +V SW +++S Y+
Sbjct: 178 AKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQ 237
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + +I++ Q+ G D++T + AC + G+ +H + K + L
Sbjct: 238 NGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTS 297
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+NAL+ MY +++ A VF I KD
Sbjct: 298 QNALISMYTNFGQIEH--------------------------------ASNVFTRIPTKD 325
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ W +M+ G ++ EAL LF+ ++ +G P+E + SV SACSSL L+YG+ VH
Sbjct: 326 LISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVH 385
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ + ++ F +L DMY+K G L A + F + D+V+W +I A+ G N
Sbjct: 386 GMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDAN 445
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC- 359
EA+ F QM G+ P+ T++S+L C + +G Q+ + ++ E VC
Sbjct: 446 EAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSY---IVKIGFDKEITVCN 502
Query: 360 -LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
L+ + ++ L+ A + + +S+ A+LSAC+
Sbjct: 503 SLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACL 541
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 113/434 (26%), Positives = 193/434 (44%), Gaps = 50/434 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LHAHV K+ + N+LI Y A +F ++P +D+ SW T+++ Y
Sbjct: 278 LGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYI 337
Query: 61 DFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L LF+ L+ +G ++ +FSAC+ L +L YGK VH K GL
Sbjct: 338 QLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGL---- 393
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
RRN+ + L + Y + A+ F +I +
Sbjct: 394 ----------------------------RRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKN 425
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
DIV W +++ EA++ F++MI G+TPD +S+L C S L GR +
Sbjct: 426 PDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQI 485
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK-TDCKDVVTWTTMIEGLANYGL 298
H +I++ ++ V +L+ MY+KC L +AL F + ++V+W ++
Sbjct: 486 HSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQ 545
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP--TIEH 356
E R++ +M G KP+ T ++L C + G Q+ Y ++ ++
Sbjct: 546 EGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVH-----CYSIKSGLILDV 600
Query: 357 FVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN---N 411
VC L+D+ ++ G L A + D +S+ +L+ + Y++ LG + N
Sbjct: 601 SVCNGLIDMYAKCGSLKHARDVFDSTQNLD-IVSWSSLI---VGYAQCGLGHEALNLFRI 656
Query: 412 MMKLGNQSHEAYVL 425
M LG Q +E L
Sbjct: 657 MTNLGVQPNEVTYL 670
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 153/365 (41%), Gaps = 66/365 (18%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T L ACA L Y K +H + K + + ++N ++ MY KC M +A
Sbjct: 161 TYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDA------- 213
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
R+VFD + ++V W SM+ G + Q +A+ ++
Sbjct: 214 -------------------------RKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMY 248
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+M G PD+ SV+ AC ++ GR +H ++++ + ALI MY+
Sbjct: 249 IQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNF 308
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNEATFVSV 324
G +E A F + KD+++W TMI G G EAL +F + R+G +PNE F SV
Sbjct: 309 GQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSV 368
Query: 325 LAACR-----------HSGLITEG-----------CQLFRRMGGVYRVQ--------PTI 354
+AC H + G C ++ + G + + P I
Sbjct: 369 FSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDI 428
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIM---PAEDKFISYKALLSACITYSEFDLGKKVANN 411
+ ++ + G +A +F + M I+Y +LL C + + G+++ +
Sbjct: 429 VSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSY 488
Query: 412 MMKLG 416
++K+G
Sbjct: 489 IVKIG 493
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 11/209 (5%)
Query: 194 KAKQPEEALELFK-KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252
K +EALE F + + + S++ AC++ +L Y + +H +L++N
Sbjct: 135 KQHHYKEALEAFDFHLKNSNSHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSI 194
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
++ +I+MY KCGS+++A F +VV+WT+MI G + G N+A+ ++ QM R
Sbjct: 195 ILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRS 254
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAG 368
G P++ TF SV+ AC +G I G QL + ++ H + L+ + + G
Sbjct: 255 GQFPDQLTFGSVIKACYIAGDIDLGRQLHAHV-----IKSWFGHHLTSQNALISMYTNFG 309
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACI 397
+ A +P +D IS+ +++ I
Sbjct: 310 QIEHASNVFTRIPTKD-LISWGTMITGYI 337
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 4/217 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + K+ L D+ V N LI Y + AR +FD D+ SW++L+ Y
Sbjct: 583 VGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYA 642
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH-CYATKVGLEYML 119
E L LF+ + G+ +++T + SAC+ + + G ++ T+ G+
Sbjct: 643 QCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTR 702
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ ++ + A+ + EA + G +I + L+ VD+A I+
Sbjct: 703 EHFSCIVDLLARAGCLHEAETFIQKSGLDADITAWKTLLAACKTHNNVDIAERGAGNILK 762
Query: 180 KDIVLWRSMMHGC---VKAKQPEEALELFKKMIDEGV 213
D +M+ C A EE +L K M GV
Sbjct: 763 LDPSNSAAMVMLCNIHASAGNWEEVAKLRKLMKQMGV 799
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 175/465 (37%), Positives = 265/465 (56%), Gaps = 5/465 (1%)
Query: 2 GKGLHAH-VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
GK L H V LDS+++V IH + L AR +FD +V +WN ++S YN
Sbjct: 154 GKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYN 213
Query: 61 DFSDSGEVLILFKQL--IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL-EY 117
F E LF ++ E + + +TLV++ SAC++L+ L GK ++ K G+ E
Sbjct: 214 RFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEP 273
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L +ENAL+ M+A C EMD A +FDEM +R +++S ++ G+ + +DLAR+ FD++
Sbjct: 274 NLILENALIDMFASCGEMDAARGVFDEMKTR-DVISWTSIVTGFANTCRIDLARKYFDQM 332
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
++D V W +M+ G ++ + +E L LF+ M V PDE MVS+L+AC+ L L+ G
Sbjct: 333 PERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGE 392
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+I +N I D F+ ALIDMY KCG++E+A F + KD TWT MI GLAN G
Sbjct: 393 WAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNG 452
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G EAL +F M + P+E T++ V+ AC H GL+ +G F M + ++P + H+
Sbjct: 453 HGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHY 512
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RAG L +A E I MP + I + +LL AC + L + AN +++L
Sbjct: 513 GCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEP 572
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ YVLL N YA W + R+ M E +K PG S++++
Sbjct: 573 ENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEM 617
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/421 (24%), Positives = 189/421 (44%), Gaps = 74/421 (17%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHF--YGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+H+ KT L S+ +I F AR +FD++P V WNT++ Y+
Sbjct: 54 IHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRI 113
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLNM 121
+ S + L+K ++ I D T L + L YGK + +A G L+ L +
Sbjct: 114 NCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFV 173
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ + +++ C ++ A ++FD MG +V+ N++++GY + + ++ +F E+ K
Sbjct: 174 QKGFIHLFSLCGLVNYARKIFD-MGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKK- 231
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH- 240
C E V+P+ +V +LSACS L +L G+ ++
Sbjct: 232 ----------C------------------ECVSPNSVTLVLMLSACSKLKDLVGGKCIYN 263
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN----- 295
++I + + + ++ ALIDM++ CG ++ A F + +DV++WT+++ G AN
Sbjct: 264 KYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRID 323
Query: 296 -----------------------YGLGN---EALRVFYQMERKGIKPNEATFVSVLAACR 329
Y N E L +F M+ +KP+E T VS+L AC
Sbjct: 324 LARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACA 383
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEH--FV--CLVDLLSRAGLLYQAEEFIKIMPAEDK 385
H G + G Y + I++ F+ L+D+ + G + +A++ M +DK
Sbjct: 384 HLGALELG-----EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDK 438
Query: 386 F 386
F
Sbjct: 439 F 439
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 4/246 (1%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
AR+VFDEI + +W +M+ G + E + L+K M+ + PD +L +
Sbjct: 88 ARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTK 147
Query: 230 LSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
L+YG+ L++ ++ + + FV+ I ++S CG + A F D +VVTW
Sbjct: 148 DMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNV 207
Query: 289 MIEGLANYGLGNEALRVFYQMERK--GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
++ G + E+ R+F +ME+K + PN T V +L+AC + G ++ +
Sbjct: 208 VLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIK 267
Query: 347 VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406
V+P + L+D+ + G + A M D IS+ ++++ DL +
Sbjct: 268 EGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRD-VISWTSIVTGFANTCRIDLAR 326
Query: 407 KVANNM 412
K + M
Sbjct: 327 KYFDQM 332
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 81/180 (45%), Gaps = 1/180 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ ++ K + +D ++GN+LI Y + A+ +F++M +D +W ++
Sbjct: 390 LGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLA 449
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHC-YATKVGLEYML 119
+ E L +F ++ + D+IT + + AC + + GK A + G++ L
Sbjct: 450 NNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNL 509
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ + + + EAL + M + N + L+ + V LA +EI++
Sbjct: 510 THYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILE 569
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 159/466 (34%), Positives = 265/466 (56%), Gaps = 6/466 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM----- 56
G+ +H+H+++ L++D+ V N+LI Y + +AR +FD+M RDV SW+ ++
Sbjct: 277 GRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQ 336
Query: 57 SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
S Y D EV L +++ EG+ +K+T + + AC L G+ +H +KVG E
Sbjct: 337 SGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFE 396
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+++ A+ MYAKC + EA ++F +M ++ N+V+ ++ YI + A +VF E
Sbjct: 397 LDRSLQTAIFNMYAKCGSIYEAEQVFSKMANK-NVVAWTSFLSMYIKCGDLSSAEKVFSE 455
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ +++V W M+ G + + EL M EG PD ++++L AC +L+ L+ G
Sbjct: 456 MPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERG 515
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+LVH ++ + D V T+LI MYSKCG + EA F K +D V W M+ G +
Sbjct: 516 KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQH 575
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G G EA+ +F +M ++ + PNE T +V++AC +GL+ EG ++FR M +++ P +H
Sbjct: 576 GDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQH 635
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL RAG L +AEEFI+ MP E + ALL AC +++ L ++ A+++++L
Sbjct: 636 YGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELE 695
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+ LSN YA G W + + RR M + +K G S I++
Sbjct: 696 PSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEI 741
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 118/452 (26%), Positives = 227/452 (50%), Gaps = 44/452 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + + ++ DIY+GNSLI+FY + A +F +M RDV +W+++++ Y
Sbjct: 75 GKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAG 134
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + F+++ I ++IT + + AC L G+ +H +G+E + +
Sbjct: 135 NNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAV 194
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MY+KC E + +A EVF ++ +++
Sbjct: 195 ATALITMYSKCGE--------------------------------ISVACEVFHKMTERN 222
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ + ++ EA EL+++M+ G++P+ VS+L++C++ L GR +H
Sbjct: 223 VVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHS 282
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG-- 299
I + + D V ALI MY KC S++EA F + +DV++W+ MI G A G
Sbjct: 283 HISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDK 342
Query: 300 ---NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV-YRVQPTIE 355
+E ++ +M R+G+ PN+ TF+S+L AC G + +G Q+ + V + + +++
Sbjct: 343 ESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQ 402
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
+ ++ ++ G +Y+AE+ M A +++ + LS I + +KV + M
Sbjct: 403 --TAIFNMYAKCGSIYEAEQVFSKM-ANKNVVAWTSFLSMYIKCGDLSSAEKVFSEM--- 456
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
++ ++ L+ YA G +V E +MK
Sbjct: 457 PTRNVVSWNLMIAGYAQNGDIVKVFELLSSMK 488
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 132/271 (48%), Gaps = 35/271 (12%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
++L + KQ G++ + T + CA+ + GK VH ++G+E + + N+L+
Sbjct: 42 QLLGIIKQ---RGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLI 98
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
Y+K F+++ S A +VF + +D+V W
Sbjct: 99 NFYSK----------FEDVAS----------------------AEQVFRRMTLRDVVTWS 126
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
SM+ P +A + F++M D + P+ +S+L AC++ S L+ GR +H +
Sbjct: 127 SMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAM 186
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ D V TALI MYSKCG + A F+K ++VV+WT +I+ A + NEA ++
Sbjct: 187 GMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELY 246
Query: 307 YQMERKGIKPNEATFVSVLAACRHSGLITEG 337
QM + GI PN TFVS+L +C + G
Sbjct: 247 EQMLQAGISPNAVTFVSLLNSCNTPEALNRG 277
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 111/236 (47%), Gaps = 13/236 (5%)
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
+WR KA + EA++L + G+ + V+ C+ + G++VH+ +
Sbjct: 28 VWR-----LCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQL 82
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ + D ++ +LI+ YSK + A F + +DVVTW++MI A +A
Sbjct: 83 DELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAF 142
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ---LFRRMGGVYRVQPTIEHFVCL 360
F +M I+PN TF+S+L AC + ++ +G + + + MG ++ + L
Sbjct: 143 DTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMG----METDVAVATAL 198
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ + S+ G + A E M E +S+ A++ A + + + ++ M++ G
Sbjct: 199 ITMYSKCGEISVACEVFHKM-TERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAG 253
>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
Length = 531
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/461 (35%), Positives = 260/461 (56%), Gaps = 5/461 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA + + ++SD +VG++LI+ Y R + AR F+K+ + V W +LM+ Y
Sbjct: 74 GKAIHARIVSSNMESD-FVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQ 132
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L L+ ++ EG+ AD +T V ACA L L GK +H ++ G + ++ +
Sbjct: 133 TGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECGFQSLV-V 191
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ALL MYAKC E+D A +F+ + S N+ N L+ Y ++LA+ F+ KD
Sbjct: 192 HTALLTMYAKCGELDAARAVFNRLAS--NVAVQNALVTMYAKCGSLELAKSAFEASGRKD 249
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ + EAL+L++ M +GV PDE + S LSAC+ +LQ GR +H
Sbjct: 250 LVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHS 309
Query: 242 FILQNNITQDAF-VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+L+N Q + V+TAL++MY +CG LE A F +DV++WT M A G +
Sbjct: 310 RVLKNQSFQSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSVYAQQGHAD 369
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+ L ++ +M GI+PNE TF S+L C H+GL+ G + F M + V P EHF+C+
Sbjct: 370 QVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVPIREHFLCM 429
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL R+G L AE ++ MP + +++ +L +C T+S+ D K+ A + +L ++
Sbjct: 430 VDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVKELDPENT 489
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
Y LLS+ + G E E + +MKE+ +K PG S+I+
Sbjct: 490 SLYSLLSSIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLIE 530
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/399 (29%), Positives = 181/399 (45%), Gaps = 70/399 (17%)
Query: 27 FYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY--NDFSDSGEVLILFKQLIFEGIVADK 84
YG+ +AR +FD + RD SW +++S Y N F D E L L++Q+ +GI D
Sbjct: 1 MYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCD--EALDLYQQMDADGIQPDS 58
Query: 85 ITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE 144
IT AC +L GK +H +E + +AL+ MYA+C +
Sbjct: 59 ITFTSALLACTKLAD---GKAIHARIVSSNMESDF-VGSALINMYARCGD---------- 104
Query: 145 MGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
V AR+ F++I +K +V W S+M V+ EAL+L
Sbjct: 105 ----------------------VSSARQAFEKIQNKHVVCWTSLMTAYVQTGHYREALDL 142
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ------------------- 245
+ +M EGV D V+ L AC+SL L+ G+ +H + +
Sbjct: 143 YGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECGFQSLVVHTALLTMYAKC 202
Query: 246 ----------NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
N + + V+ AL+ MY+KCGSLE A F + KD+V+W MI A
Sbjct: 203 GELDAARAVFNRLASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQ 262
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
+GLG EAL ++ M +G+ P+E T S L+AC SG + G ++ R+ Q ++
Sbjct: 263 HGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFQSSLM 322
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
LV++ R G L A + M D +S+ A+ S
Sbjct: 323 VQTALVNMYGRCGRLETARSMFEDMGQRD-VLSWTAMTS 360
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 32/231 (13%)
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
MY KCGS+EEA F +D V+WT+MI AN G +EAL ++ QM+ GI+P+ T
Sbjct: 1 MYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSIT 60
Query: 321 FVSVLAACR--------HSGLITEGCQ----------LFRRMGGVYRVQPTIE-----HF 357
F S L AC H+ +++ + ++ R G V + E H
Sbjct: 61 FTSALLACTKLADGKAIHARIVSSNMESDFVGSALINMYARCGDVSSARQAFEKIQNKHV 120
Query: 358 VCLVDLLS---RAGLLYQAEEFIKIMPAED---KFISYKALLSACITYSEFDLGKKVANN 411
VC L++ + G +A + M E ++Y L AC + GK +
Sbjct: 121 VCWTSLMTAYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHLR 180
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ + G QS + L YA G E+ AR L + N+++ +
Sbjct: 181 VSECGFQSLVVHTALLTMYAKCG---ELDAARAVFNRLASNVAVQNALVTM 228
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/461 (35%), Positives = 262/461 (56%), Gaps = 32/461 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA + K S +V N+LIH Y AR +FD+M R+V +WN++ + Y
Sbjct: 143 GEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTK 202
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ EV+ LF +++ I D++TLV + +AC RL L G+ ++ Y + GL+ +
Sbjct: 203 SGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTL 262
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MYAKC + VD AR +FD++ +D
Sbjct: 263 ITSLVDMYAKCGQ--------------------------------VDTARRLFDQMDRRD 290
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ G +A + EAL+LF +M + P+E MVS+LS+C+ L L+ G+ VH
Sbjct: 291 VVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHF 350
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
FI + + + TAL+D Y+KCGS+E ++ F K K+V++WT +I+GLA+ G G +
Sbjct: 351 FIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKK 410
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL FY M K ++PN+ TF+ VL+AC H+GL+ EG LF M + ++P IEH+ C+V
Sbjct: 411 ALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMV 470
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L RAGL+ +A +FIK MP + + ++ LL++C + ++G++ ++ L
Sbjct: 471 DILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSG 530
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+LLSN YA G W + + R MKE +K PG S+I+L
Sbjct: 531 DYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIEL 571
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 200/408 (49%), Gaps = 45/408 (11%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIYND 61
+HAH+ KT L V +L+ + L T A +F ++ D ++N ++ +
Sbjct: 43 IHAHLIKTRLLLKPKVAENLLE-SAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTL 101
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E ++LFK++ + D+ T + C+RL+ L G+ +H K G +
Sbjct: 102 KQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFV 161
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+N L+ MYA C E++ A R+FDEM S RN+ +
Sbjct: 162 KNTLIHMYANCGEVEVARRVFDEM-SERNVRT---------------------------- 192
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
W SM G K+ EE ++LF +M++ + DE +VSVL+AC L++L+ G ++R
Sbjct: 193 ---WNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINR 249
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ + + + + T+L+DMY+KCG ++ A F + D +DVV W+ MI G + E
Sbjct: 250 YVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCRE 309
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG--CQLFRRMGGVYRVQPTIEHFVC 359
AL +F++M++ I PNE T VS+L++C G + G F + R++ T+
Sbjct: 310 ALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKK---RMKLTVTLGTA 366
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
L+D ++ G + + E MP ++ +S+ L+ + + GKK
Sbjct: 367 LMDFYAKCGSVESSIEVFGKMPVKN-VLSWTVLIQGLASNGQ---GKK 410
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 134/281 (47%), Gaps = 11/281 (3%)
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNI----VSLNILINGYIDMEL-VDLAREVFDE 176
EN L+ +CK + + + + R + V+ N+L + I + +D A +F +
Sbjct: 24 ENPKTLILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQ 83
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
I + D + M+ G + P EA+ LFK+M + V PDE +L CS L L G
Sbjct: 84 IDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEG 143
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+H I++ FVK LI MY+ CG +E A F + ++V TW +M G
Sbjct: 144 EQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKS 203
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAAC-RHSGL-ITEGCQLFRRMGGVYRVQPTI 354
G E +++F++M I+ +E T VSVL AC R + L + E + G+ + PT+
Sbjct: 204 GNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGL-KGNPTL 262
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
LVD+ ++ G + A M D +++ A++S
Sbjct: 263 --ITSLVDMYAKCGQVDTARRLFDQMDRRD-VVAWSAMISG 300
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 144/319 (45%), Gaps = 45/319 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ ++ +V + L + + SL+ Y + AR LFD+M RDV +W+ ++S Y+
Sbjct: 243 LGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYS 302
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E L LF ++ I ++IT+V + S+CA L L GK VH + K ++ +
Sbjct: 303 QASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVT 362
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ YAKC ++ ++ +F +M K
Sbjct: 363 LGTALMDFYAKCGSVESSIEVFGKMPV--------------------------------K 390
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR--- 237
+++ W ++ G Q ++ALE F M+++ V P++ + VLSACS + GR
Sbjct: 391 NVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLF 450
Query: 238 --LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL- 293
+ F ++ I ++D+ + G +EEA + + V W T++
Sbjct: 451 VSMSRDFGIEPRIEHYG----CMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCK 506
Query: 294 --ANYGLGNEALRVFYQME 310
N +G E+L+ +E
Sbjct: 507 VHKNVEIGEESLKQLIILE 525
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 163/463 (35%), Positives = 263/463 (56%), Gaps = 2/463 (0%)
Query: 1 MGKGLHAHVTKTAL-DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+G +H +K +D ++ ++LI Y DAR LFDKM RDV +WN ++ Y
Sbjct: 133 LGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGY 192
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ + VL L++++ G D I L + SACA L YGK +H + G
Sbjct: 193 SQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGS 252
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+++ +L+ MYA C M A ++D++ S+ +VS +L +GY + +V AR +FD +V+
Sbjct: 253 HIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAML-SGYAKLGMVQDARFIFDRMVE 311
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KD+V W +M+ G ++ QP EAL+LF +M + PD+ M+SV+SAC+++ L + +
Sbjct: 312 KDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWI 371
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + +N + + ALIDMY+KCG+L +A F K+V++W++MI A +G
Sbjct: 372 HTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDA 431
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+ A+ +F++M+ + I+PN TF+ VL AC H+GL+ EG + F M +R+ P EH+ C
Sbjct: 432 DSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGC 491
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDL RA L +A E I+ MP I + +L+SAC + E +LG+ A +++L
Sbjct: 492 MVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDH 551
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A V+LSN YA E W +V R+ MK K+ S I++
Sbjct: 552 DGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEV 594
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 170/457 (37%), Positives = 250/457 (54%), Gaps = 35/457 (7%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HA K + V N+L+ FYG DAR +FD+M RDV SW L+S F+
Sbjct: 141 HAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSA---FTRG 197
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
G + L + +++TL + AC L GK VH +
Sbjct: 198 GMFMEALGVLAEMDVTPNEVTLASVLVACGNLGTARAGKAVHGW---------------- 241
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+ + KE+ N++ N L++ Y+ E +DLAR VFD ++ +DIV W
Sbjct: 242 --YFRREKEL--------------NLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSW 285
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
M+ G V+ K+P EALE+F M GV PD+ V+ +VLSAC+SL L+ GR VH +I +
Sbjct: 286 TVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIER 345
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
I D V T+++DMY KCG L+ A+ F + K+V +W +I G A +G G EAL
Sbjct: 346 KGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDC 405
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F +M G+ PNE TF++VL AC HSGL+ EG QLF M Y++ P +H+ C+VDLL
Sbjct: 406 FDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLG 465
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
RAGL+ +A + IK MP ++ LLSAC + D +++ ++ +L + + YVL
Sbjct: 466 RAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAHGRMDFSQQILMHIHELESSGNGIYVL 525
Query: 426 LSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
LSN YA+ W +V +AR M E +K+PG+S+I++
Sbjct: 526 LSNMYAVSDRWADVGKARGFMNEKGMQKEPGSSVIEV 562
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 150/353 (42%), Gaps = 49/353 (13%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFE-----GIVADKITLVILFSACARLEK-LHYGKT 105
+N L+S D F L+ G D TL ACARL L G
Sbjct: 80 FNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGCQ 139
Query: 106 VHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME 165
H A K G + ++NAL+ Y C + +A ++FDEM R
Sbjct: 140 AHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAER----------------- 182
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS 225
D+V W +++ + EAL + +M VTP+E + SVL
Sbjct: 183 ---------------DVVSWTALLSAFTRGGMFMEALGVLAEM---DVTPNEVTLASVLV 224
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
AC +L + G+ VH + + + V AL+DMY KC L+ A F +D+V+
Sbjct: 225 ACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVS 284
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG---CQLFR 342
WT MI GL +EAL VF M+ G+KP++ +VL+AC G + G +
Sbjct: 285 WTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIE 344
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
R G ++ + +VD+ + G L A + MP ++ S+ AL++
Sbjct: 345 RKG----IEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKN-VSSWNALING 392
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 147/319 (46%), Gaps = 41/319 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + + ++ VGN+L+ Y + AR +FD + RD+ SW ++S
Sbjct: 235 GKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQ 294
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L +F + G+ DK+ L + SACA L L G+ VH Y + G+E+ +++
Sbjct: 295 CKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHV 354
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+++ MY KC +D A+ +F EM +N+ S N LING+
Sbjct: 355 GTSVVDMYVKCGCLDTAVSIFQEM-PLKNVSSWNALINGFA------------------- 394
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+HG + EAL+ F +M+ G+ P+E ++VL AC +Q GR +
Sbjct: 395 -------LHG-----RGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFE 442
Query: 242 FILQN---NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD-VVTWTTMIEGLANYG 297
+ ++ + +D + ++D+ + G ++EA + V TW T++ +G
Sbjct: 443 LMTKSYKLSPWEDHY--GCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAHG 500
Query: 298 ---LGNEALRVFYQMERKG 313
+ L +++E G
Sbjct: 501 RMDFSQQILMHIHELESSG 519
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 158/450 (35%), Positives = 258/450 (57%), Gaps = 3/450 (0%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ +I N +++ Y + ARV+F+++P +D+ +W T++ Y E L++++
Sbjct: 261 EKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRS 320
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+I G + + +V L S C R + G+ + K+G + +++ ++ +YA C
Sbjct: 321 MISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGR 380
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
++EA F +GS+ N+ S N LI GY+ ++D A E+F+E+ ++D+ W +M+ G +
Sbjct: 381 INEACLQF-RIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQ 439
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+QP ALELF KM+ G+ P+E MVSVLSA ++ L+ GR H ++ N+IT +
Sbjct: 440 NEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNL 499
Query: 255 KTALIDMYSKCGSLEEALVTFY--KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
A+IDMY+KCGS+ AL FY + V W +I GLA +G N +L++F +ER+
Sbjct: 500 SAAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERR 559
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
IK N TF+ VL AC H GL+ G + F M + + P I+H+ C+VDLL RAG L +
Sbjct: 560 HIKLNAITFIGVLTACCHVGLVESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEE 619
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432
AEE I+ MP + + + LL+AC T+ D+G++ A N+ +L + VLLSN YA
Sbjct: 620 AEEMIRSMPMKADVVIWGTLLAACRTHGNVDVGERAAENLARLEPSHGASRVLLSNMYAD 679
Query: 433 EGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
G W + RR M+ + ++ PG S + L
Sbjct: 680 AGKWEDAFLVRRAMQSHRMQRLPGYSGVAL 709
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 120/398 (30%), Positives = 194/398 (48%), Gaps = 63/398 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
GK +H V+K+ L S+ ++ NSLI+ YG+ L DA+ +FD P D S+N ++S Y
Sbjct: 85 GKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIFDVCPRSDPVSYNVMISGYVK 144
Query: 60 --------------------------NDFSDS---GEVLILFKQLIFEGIVADKITLVIL 90
FS + + + LFKQ+ G+V +++T+ L
Sbjct: 145 SGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATL 204
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SA + + + +H K+ E + + LL MY C + EA LFDEM +N
Sbjct: 205 VSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEM-PEKN 263
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
IVS N+++NGY VD AR VF+ I +KD+V W +++ G V+ ++ EAL +++ MI
Sbjct: 264 IVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMIS 323
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G P++ +MV ++S C + G+ + +++ F+++ +I +Y+ CG + E
Sbjct: 324 AGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINE 383
Query: 271 ALVTFY-------------------------------KTDCKDVVTWTTMIEGLANYGLG 299
A + F + +DV +W+TMI G
Sbjct: 384 ACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQP 443
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
N AL +F++M GIKPNE T VSVL+A SG + EG
Sbjct: 444 NLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEG 481
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 174/365 (47%), Gaps = 44/365 (12%)
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
++ LV C+ L GK +HC +K GL ++N+L+ MY KC + +A +FD
Sbjct: 66 ELVLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIFD 125
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
+ R + VS N++I+GY+ +D A E+FDE+ K V + +M+ G + + +A+E
Sbjct: 126 -VCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVE 184
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
LFK+M + GV P+E + +++SA S + R++H +++ + V T L+ MY
Sbjct: 185 LFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYC 244
Query: 264 KCGSLEE-------------------------------ALVTFYKTDCKDVVTWTTMIEG 292
C SL E A V F + KD+VTW T+I+G
Sbjct: 245 VCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDG 304
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMG-GVY 348
NEAL ++ M G +PN+ V +++ C + +TEG QL +MG Y
Sbjct: 305 YVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCY 364
Query: 349 R-VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
+Q TI H ++ A L ++ + +++ S+ AL++ + D +
Sbjct: 365 DFIQSTIIHLYAACGRINEACLQFR-------IGSKENVASWNALIAGYVRNRMIDRAME 417
Query: 408 VANNM 412
+ N M
Sbjct: 418 LFNEM 422
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 167/470 (35%), Positives = 266/470 (56%), Gaps = 8/470 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG +HA ++K+ D+Y+G++L+ Y + + A+ FD M R++ SWN+L++ Y
Sbjct: 169 MGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYE 228
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYML 119
+G+ L +F ++ G+ D+ITL + SACA + G +H K L
Sbjct: 229 QNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDL 288
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NAL+ MYAKC+ ++EA +FD M RN+VS ++ GY V AR +F +++
Sbjct: 289 VLGNALVDMYAKCRRVNEARLVFDRM-PLRNVVSETSMVCGYARAASVKAARLMFSNMME 347
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-- 237
K++V W +++ G + + EEA+ LF + E + P ++L+AC++L++L+ GR
Sbjct: 348 KNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQA 407
Query: 238 ----LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
L H F Q+ D FV +LIDMY KCG +E+ + F + +DVV+W MI G
Sbjct: 408 HTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGY 467
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A G G AL +F +M G KP+ T + VL+AC H+GL+ EG + F M + P
Sbjct: 468 AQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPM 527
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
+HF C+VDLL RAG L +A + I+ MP + + + +LL+AC + +LGK VA +M
Sbjct: 528 KDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKLM 587
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++ + YVLLSN YA G W +V R+ M++ K+PG S I+++
Sbjct: 588 EIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQ 637
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 171/393 (43%), Gaps = 101/393 (25%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
+ +HA + KT S+I++ N L+ YG+ F DAR +FD+MP R+ S+N ++S+
Sbjct: 38 ARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTK 97
Query: 62 FSDSGEVLILFKQLI-------------------------------FEGIVADKITLVIL 90
F E +FK + E V ++ +
Sbjct: 98 FGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSA 157
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLN--MENALLLMYAKCKEMDEALRLFDEMGSR 148
SACA L L+ G +H +K Y+L+ M +AL+ MY+KC + A R FD M
Sbjct: 158 LSACAGLTDLNMGIQIHALISKS--RYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAV- 214
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE-EALELFKK 207
RNIVS N LI C + P +ALE+F
Sbjct: 215 RNIVSWNSLIT--------------------------------CYEQNGPAGKALEVFVM 242
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCG 266
M+D GV PDE + SV+SAC+S S ++ G +H R + ++ D + AL+DMY+KC
Sbjct: 243 MMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCR 302
Query: 267 SLEEALVTFYKTD-----------C--------------------KDVVTWTTMIEGLAN 295
+ EA + F + C K+VV+W +I G
Sbjct: 303 RVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQ 362
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
G EA+R+F ++R+ I P TF ++L AC
Sbjct: 363 NGENEEAVRLFLLLKRESIWPTHYTFGNLLNAC 395
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 2/342 (0%)
Query: 73 KQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKC 132
++L+ E D L +C R + + +H K + ++N L+ Y KC
Sbjct: 8 QKLVGELCFLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKC 67
Query: 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC 192
++A ++FD M +RN S N +++ +D A VF + + D W +M+ G
Sbjct: 68 GYFEDARKVFDRM-PQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGF 126
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252
+ + EEAL F M E +E S LSAC+ L++L G +H I ++ D
Sbjct: 127 AQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDV 186
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
++ +AL+DMYSKCG + A F +++V+W ++I G +AL VF M
Sbjct: 187 YMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDN 246
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
G++P+E T SV++AC I EG Q+ R+ + + + LVD+ ++ + +
Sbjct: 247 GVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNE 306
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
A MP + +S +++ + + + +NMM+
Sbjct: 307 ARLVFDRMPLRN-VVSETSMVCGYARAASVKAARLMFSNMME 347
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 161/461 (34%), Positives = 258/461 (55%), Gaps = 1/461 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+G H + D D +VG +L+ Y +AR +FD MP RD+ +W ++ Y +
Sbjct: 13 RGTHGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNT 72
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ E L+L ++ +V D++ L + S C L GKT+H Y + +
Sbjct: 73 QNYRETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLS 132
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
+AL+ MYA C +M+ A +++ M R+++VS ++ GY +++AR +F+ + +KD+
Sbjct: 133 SALINMYASCMDMEMADKIYSGM-QRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDV 191
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +M+ + QP E L LF KM GV+PDE M+SV+SAC+++ +L R +H
Sbjct: 192 VSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSI 251
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+ + + + ALIDM+SKCGSL AL F K+V+TWT+MI A +G G A
Sbjct: 252 VGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSA 311
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F QM+ +G++PN TF+ +L AC H+GL+ EG LF M YR++P EH+ C+VD
Sbjct: 312 LTLFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVD 371
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
L+ RA L+ +A + I+ M + +LL+AC + + +LG+ A +++L A
Sbjct: 372 LMGRAKLMQEAVDLIESMHIRPNVAIWGSLLAACWMHGDIELGEFAAKKILELDPNHDGA 431
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVLLSN +A G+W + R MK K+ G S ++L
Sbjct: 432 YVLLSNIHAKSGNWNNAQKLRVMMKVHGVSKETGYSWLELN 472
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 142/336 (42%), Gaps = 69/336 (20%)
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
A AR + H A +VG + + AL+ YA C+ + EA R+FD M R
Sbjct: 2 AAARARWTDTVRGTHGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPER---- 57
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
D+V W M+ + E L L KM
Sbjct: 58 ----------------------------DLVAWGVMLDSYFNTQNYRETLLLLNKMKRSR 89
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC------- 265
V PD+ ++ +VLS C +L+ G+ +H +I ++I DA + +ALI+MY+ C
Sbjct: 90 VVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMDMEMAD 149
Query: 266 ------------------------GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
G +E A F KDVV+W+ MI A +E
Sbjct: 150 KIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSE 209
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG--GVYRVQPTIEHFVC 359
L +F +M+ G+ P+E T +SV++AC + G + + + +G G Y++
Sbjct: 210 VLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSICN---A 266
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
L+D+ S+ G L A MP ++ I++ ++++A
Sbjct: 267 LIDMFSKCGSLTLALNMFNAMPRKN-VITWTSMIAA 301
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 166/497 (33%), Positives = 274/497 (55%), Gaps = 34/497 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+ + K L ++ V NSL++ Y + A+V+FD+M +D+ SWN +++++
Sbjct: 165 GKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQ 224
Query: 62 FSDSGEVLILFKQLIFEGIV--------------------------------ADKITLVI 89
+ F+Q+ IV D+ TL
Sbjct: 225 VGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLAS 284
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA LEKL G+ +H + G + + NAL+ MY++C ++ A RL ++ G++
Sbjct: 285 VLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKD 344
Query: 150 -NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
I L++GYI + ++ A+ +FD + D+D+V W +M+ G + EA+ LF+ M
Sbjct: 345 LKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSM 404
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+ E P+ + ++LS SSL++L +G+ +H +++ V ALI MY+K GS+
Sbjct: 405 VGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSI 464
Query: 269 EEALVTFYKTDC-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
A F C +D V+WT+MI LA +G EAL +F M +G++P+ T+V V +A
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSA 524
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C H+GL+ +G Q F M V ++ PT+ H+ C+VDL RAGLL +A+EFI+ MP E +
Sbjct: 525 CTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVV 584
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
++ +LLSAC Y DLGK A ++ L ++ AY L+N Y+ G W E A+ R++MK
Sbjct: 585 TWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMK 644
Query: 448 ELQTRKKPGNSIIDLKH 464
+ + +K+ G S I++KH
Sbjct: 645 DGRVKKEQGFSWIEVKH 661
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 133/489 (27%), Positives = 218/489 (44%), Gaps = 74/489 (15%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY---ND 61
+H V K+ L +Y+ N+L++ Y + AR LFD+MP R SWNT++S Y D
Sbjct: 36 VHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGD 95
Query: 62 FSDSGE----------------------------VLILFKQLIFEGIVADKITLVILFSA 93
S E + + +++ EGI + TL + ++
Sbjct: 96 MDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLAS 155
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
A L GK VH + K+GL +++ N+LL MYAKC + A +FD M ++I S
Sbjct: 156 VAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRM-VVKDISS 214
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI-DEG 212
N +I ++ + +DLA F+++ ++DIV W SM+ G + AL++F KM+ D
Sbjct: 215 WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSM 274
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE--- 269
++PD + SVLSAC++L L G +H I+ V ALI MYS+CG +E
Sbjct: 275 LSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETAR 334
Query: 270 ------------------------------EALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
EA F +DVV WT MI G +GL
Sbjct: 335 RLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLY 394
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMGGVYRVQPTIEH 356
EA+ +F M + +PN T ++L+ + G Q+ + G +Y V +
Sbjct: 395 GEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVS--- 451
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L+ + ++AG + A ++ E +S+ +++ A + + ++ M+ G
Sbjct: 452 -NALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEG 510
Query: 417 -NQSHEAYV 424
H YV
Sbjct: 511 LRPDHITYV 519
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 138/335 (41%), Gaps = 74/335 (22%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGR------------------------------ 30
+G+ +H+H+ T D V N+LI Y R
Sbjct: 297 IGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDG 356
Query: 31 ---MALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87
+ +A+ +FD + RDV +W ++ Y GE + LF+ ++ E + TL
Sbjct: 357 YIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTL 416
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ S + L L +GK +H A K G Y +++ NAL+ MYAK + A R FD +
Sbjct: 417 AAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRC 476
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
R+ VS W SM+ + EEALELF+
Sbjct: 477 ERDTVS-------------------------------WTSMIIALAQHGHAEEALELFET 505
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT-----ALIDMY 262
M+ EG+ PD V V SAC+ + GR F + ++ D + T ++D++
Sbjct: 506 MLMEGLRPDHITYVGVFSACTHAGLVNQGR--QYFDMMKDV--DKIIPTLSHYACMVDLF 561
Query: 263 SKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANY 296
+ G L+EA K + DVVTW +++ Y
Sbjct: 562 GRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVY 596
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 165/442 (37%), Positives = 262/442 (59%), Gaps = 2/442 (0%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFR--DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG 79
NS+I +GR AR +F+ + R D+ SW+ ++S Y E L+LF ++ G
Sbjct: 206 NSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSG 265
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL 139
+ D++ +V SAC+R+ + G+ VH A KVG+E ++++NAL+ +Y+ C E+ +A
Sbjct: 266 VAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDAR 325
Query: 140 RLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
R+FD+ G +++S N +I+GY+ + A +F + +KD+V W +M+ G + +
Sbjct: 326 RIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFS 385
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
EAL LF++M GV PDE +VS +SAC+ L+ L G+ +H +I +N + + + T LI
Sbjct: 386 EALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLI 445
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
DMY KCG +E AL FY + K V TW +I GLA G ++L +F M++ G PNE
Sbjct: 446 DMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEI 505
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
TF+ VL ACRH GL+ +G F M ++++ I+H+ C+VDLL RAGLL +AEE I
Sbjct: 506 TFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDS 565
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
MP ++ ALL AC + + ++G+++ +++L +VLLSN YA +G+W V
Sbjct: 566 MPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNV 625
Query: 440 AEARRNMKELQTRKKPGNSIID 461
E R M + K PG S+I+
Sbjct: 626 LEIRGIMAQHGVVKTPGCSMIE 647
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 123/455 (27%), Positives = 205/455 (45%), Gaps = 73/455 (16%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGR---MALFTDARVLFDKMPFRDVGSWNTLMSIY 59
K L + T L +D Y + LI+F + F + +F+ + + +WNT+M +
Sbjct: 20 KQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTIMRAH 79
Query: 60 NDFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+S + L+ +K + D T IL CA G+ +H +A G +
Sbjct: 80 LYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGD 139
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + N L+ +YA C + A R+F+E ++VS N L+ GY+ V+ A VF+ +
Sbjct: 140 VYVRNTLMNLYAVCGSVGSARRVFEE-SPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMP 198
Query: 179 DKDIVLWRSMM-----HGCV-KAKQ---------------------------PEEALELF 205
+++ + SM+ GCV KA++ EEAL LF
Sbjct: 199 ERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLF 258
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS-- 263
+M GV DE V+VS LSACS + N++ GR VH ++ + +K ALI +YS
Sbjct: 259 VEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSC 318
Query: 264 ------------------------------KCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
+CGS+++A + FY KDVV+W+ MI G
Sbjct: 319 GEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGY 378
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A + +EAL +F +M+ G++P+E VS ++AC H + G + + ++Q
Sbjct: 379 AQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYI-SRNKLQVN 437
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
+ L+D+ + G + A E M E+K +S
Sbjct: 438 VILSTTLIDMYMKCGCVENALEVFYAM--EEKGVS 470
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 89/378 (23%), Positives = 153/378 (40%), Gaps = 66/378 (17%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ NS+I Y R DA +LF MP +DV SW+ ++S Y E L LF+++
Sbjct: 336 DLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQ 395
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
G+ D+ LV SAC L L GK +H Y ++ L+ + + L+ MY KC ++
Sbjct: 396 LHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVE 455
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
AL +F M +K + W +++ G
Sbjct: 456 NALEVFYAME--------------------------------EKGVSTWNAVILGLAMNG 483
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQNNITQD 251
E++L +F M G P+E + VL AC + + GR ++H ++ NI
Sbjct: 484 SVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHY 543
Query: 252 AFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLANYG---LGNEALRVF 306
++D+ + G L+EA L+ DV TW ++ + +G R
Sbjct: 544 G----CMVDLLGRAGLLKEAEELIDSMPM-APDVATWGALLGACRKHRDNEMGERLGRKL 598
Query: 307 YQMER---------KGIKPNEATFVSVLA----ACRHSGLITEGCQLFRRMGGVY----- 348
Q++ I ++ + +VL +H + T GC + G V+
Sbjct: 599 IQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAG 658
Query: 349 -RVQPTIEHFVCLVDLLS 365
+ P I ++D+++
Sbjct: 659 DKTHPQINDIEHMLDVVA 676
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 35/287 (12%)
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQ-PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
+F+ + + + W ++M + + P +AL +K + PD +L C++
Sbjct: 60 IFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARV 119
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
+ GR +H + + D +V+ L+++Y+ CGS+ A F ++ D+V+W T++
Sbjct: 120 SEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLA 179
Query: 292 GLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
G G EA RVF M ER I N S++A G + + ++F + G R
Sbjct: 180 GYVQAGEVEEAERVFEGMPERNTIASN-----SMIALFGRKGCVEKARRIFNGVRGRER- 233
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK------------ALLSACIT 398
D++S + ++ E+ A F+ K + LSAC
Sbjct: 234 -----------DMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSR 282
Query: 399 YSEFDLGKKVANNMMKLGNQSHEAYVLLSN-FYALEGHWTEVAEARR 444
++G+ V +K+G E YV L N L E+ +ARR
Sbjct: 283 VLNVEMGRWVHGLAVKVGV---EDYVSLKNALIHLYSSCGEIVDARR 326
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 53/273 (19%), Positives = 110/273 (40%), Gaps = 38/273 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA++++ L ++ + +LI Y + +A +F M + V +WN ++
Sbjct: 421 LGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLA 480
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L +F + G V ++IT + + AC + ++ G+ H + +
Sbjct: 481 MNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGR--HYFNS--------- 529
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI-VD 179
+ E NI +++ L+ A E+ D + +
Sbjct: 530 --------------------MIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMA 569
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+ W +++ C K + E L +K+I + PD + +LS + S +G ++
Sbjct: 570 PDVATWGALLGACRKHRDNEMGERLGRKLIQ--LQPDHDGFHVLLSNIYA-SKGNWGNVL 626
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
++ + Q VKT M G++ E L
Sbjct: 627 E---IRGIMAQHGVVKTPGCSMIEANGTVHEFL 656
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 171/458 (37%), Positives = 245/458 (53%), Gaps = 33/458 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H H +T L SD VG++ IH Y R DAR+LFDK+ R V +WN ++
Sbjct: 546 VHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRC 605
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E L LF Q+ EG + D T + + SA E L + K VH +AT GL L + NA
Sbjct: 606 GREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNA 664
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ Y+KC V A++VFD++V++++
Sbjct: 665 LVHTYSKCGN--------------------------------VKYAKQVFDDMVERNVTT 692
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W M+ G + +A F +M+ EG+ PD VS+LSAC+S L++ + VH +
Sbjct: 693 WTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAV 752
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ D V AL+ MY+KCGS+++A F +DV +WT MI GLA +G G EAL
Sbjct: 753 SAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALD 812
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
F +M+ +G KPN ++V+VL AC H+GL+ EG + F M Y ++PT+EH+ C+VDLL
Sbjct: 813 FFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLL 872
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
RAGLL +AE FI MP E + ALL AC+TY ++ + A +KL +S YV
Sbjct: 873 GRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYV 932
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
LLSN YA G W + R M+ RK+PG S I++
Sbjct: 933 LLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEV 970
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 160/327 (48%), Gaps = 34/327 (10%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H+H L D+ VGN+L+H Y + DARV+FD M RD+ SW ++
Sbjct: 340 KEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQH 399
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILF--SACARLEKLHYGKTVHCYATKVGLEYMLN 120
E LF Q+ G + + T + + SA A L + K VH +A + G L
Sbjct: 400 GRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLR 459
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC +D+A R VFD + D+
Sbjct: 460 IGNALIHMYAKCGSIDDA--------------------------------RLVFDGMCDR 487
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D++ W +MM G + EA +F +M EG+ PD +S+L+ S L++ VH
Sbjct: 488 DVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVH 547
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ ++ + D V +A I MY +CGS+++A + F K + V TW MI G A G
Sbjct: 548 KHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGR 607
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAA 327
EAL +F QM+R+G P+ TF+++L+A
Sbjct: 608 EALSLFLQMQREGFIPDATTFINILSA 634
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 168/327 (51%), Gaps = 32/327 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H + K+ ++ ++YV N L+ Y R AR +FDK+ +++ W T++ Y
Sbjct: 136 LAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYA 195
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ + + + ++ ++ E ++IT + + AC L +GK +H + + G + +
Sbjct: 196 EYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVR 255
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+E AL+ MY KC +++A + +FD++V++
Sbjct: 256 VETALVNMYVKCGSIEDA--------------------------------QLIFDKMVER 283
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+++ W M+ G + +EA LF +M EG P+ VS+L+A +S L++ + VH
Sbjct: 284 NVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVH 343
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + D V AL+ MY+K GS+++A V F +D+ +WT MI GLA +G G
Sbjct: 344 SHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQ 403
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAA 327
EA +F QM+R G PN T++S+L A
Sbjct: 404 EAFSLFLQMQRNGCLPNLTTYLSILNA 430
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 141/268 (52%), Gaps = 32/268 (11%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
+ + + K + +GI D + V + C + E + K VH K G+E L + N LL
Sbjct: 101 DAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLL 160
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
+Y +C + AR+VFD+++ K+I +W
Sbjct: 161 RVYIRCGRLQ--------------------------------CARQVFDKLLKKNIYIWT 188
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
+M+ G + E+A+ ++ KM E P+E +S+L AC NL++G+ +H I+Q+
Sbjct: 189 TMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQS 248
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
D V+TAL++MY KCGS+E+A + F K ++V++WT MI GLA+YG G EA +F
Sbjct: 249 GFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLF 308
Query: 307 YQMERKGIKPNEATFVSVLAACRHSGLI 334
QM+R+G PN T+VS+L A +G +
Sbjct: 309 LQMQREGFIPNSYTYVSILNANASAGAL 336
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 152/331 (45%), Gaps = 47/331 (14%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H+H T L D+ VGN+L+H Y + A+ +FD M R+V +W ++
Sbjct: 645 KEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQH 703
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ F Q++ EGIV D T V + SACA L + K VH +A GL L +
Sbjct: 704 GCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVG 763
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
NAL+ MYAKC +D+A +FD+M V++D+
Sbjct: 764 NALVHMYAKCGSIDDARSVFDDM--------------------------------VERDV 791
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W M+ G + + EAL+ F KM EG P+ V+VL+ACS + GR +F
Sbjct: 792 FSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGR--RQF 849
Query: 243 ILQNNITQDAFVK------TALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLAN 295
+ ++TQD ++ T ++D+ + G LEEA + + D W ++
Sbjct: 850 L---SMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVT 906
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
Y GN + F ER +KP A+ +L+
Sbjct: 907 Y--GNLEMAEFAAKERLKLKPKSASTYVLLS 935
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249
H + AK +A+ + K + +G+ D V++L C ++ + VH I+++ +
Sbjct: 94 HNVITAK---DAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGME 150
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
Q+ +V L+ +Y +CG L+ A F K K++ WTTMI G A YG +A+RV+ +M
Sbjct: 151 QNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKM 210
Query: 310 ERKGIKPNEATFVSVLAAC 328
++ +PNE T++S+L AC
Sbjct: 211 RQECGQPNEITYLSILKAC 229
>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 156/462 (33%), Positives = 251/462 (54%), Gaps = 31/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K L SD++ G SL Y + AR +F + D+ +WN +++ +
Sbjct: 320 GRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFAS 379
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S++ E F Q+ G+V + +T++ L AC+ L++G VH Y K+G + +
Sbjct: 380 VSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPV 439
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+LL MY+KC +++AL++F+++G++ D
Sbjct: 440 CNSLLSMYSKCSNLNDALQVFEDIGNK-------------------------------AD 468
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W +++ C++ Q E L L K M + PD + +VL + +++ + G +H
Sbjct: 469 IVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHC 528
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
FI+++ + D V ALI+MY+KCGSLE A F D+++W+++I G A G G E
Sbjct: 529 FIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKE 588
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A +F M G+KPNE TFV +L AC H G++ EG +L+R M YR+ PT EH C+V
Sbjct: 589 AFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMV 648
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL+RAG L AE+FIK MP + +K LL+AC + ++GK+ A N++K+ +
Sbjct: 649 DLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSA 708
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A V+L N +A GHW + A R +M+ + K PG S I++K
Sbjct: 709 AVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIK 750
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 189/403 (46%), Gaps = 38/403 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H H+ D+ + N ++ YG+ +AR +FD MP ++V SW +++S Y+
Sbjct: 117 GRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSR 176
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + + L+ Q++ G + D T + +C+ L+ + +H + K L
Sbjct: 177 YGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIA 236
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+NAL+ MY K +M +A+ VF I+ KD
Sbjct: 237 QNALISMYTKFSQMADAI--------------------------------NVFSRIIIKD 264
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ W SM+ G + EAL F++M+ + V P+E V S SACS L GR +H
Sbjct: 265 LISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIH 324
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ + D F +L DMY+KCG LE A FY + D+V W +I G A+
Sbjct: 325 GLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAK 384
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC- 359
E+ F QM G+ PN+ T +S+L AC ++ G Q+ + ++ ++ VC
Sbjct: 385 ESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSY---IVKMGFNLDIPVCN 441
Query: 360 -LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
L+ + S+ L A + + + + +S+ LL+AC+ ++
Sbjct: 442 SLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQ 484
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/422 (25%), Positives = 187/422 (44%), Gaps = 65/422 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ + LHAHV K+ +D+ N+LI Y + + DA +F ++ +D+ SW ++++ ++
Sbjct: 217 LARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFS 276
Query: 61 DFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L F++++ + + ++ FSAC++L + G+ +H K GL L
Sbjct: 277 QLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDL 336
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+L MYAKC G+++ AR VF I
Sbjct: 337 FAGCSLCDMYAKC---------------------------GFLES-----ARTVFYHIEK 364
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W +++ G +E+ F +M G+ P++ ++S+L ACS L +G V
Sbjct: 365 PDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQV 424
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGL 298
H +I++ D V +L+ MYSKC +L +AL F K D+V+W T++
Sbjct: 425 HSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQ 484
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
E LR+ M IKP+ T +VL + SG I Y V I F+
Sbjct: 485 AGEVLRLTKLMFASRIKPDHVTLTNVLVS---SGQIAS-----------YEVGSQIHCFI 530
Query: 359 -------------CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
L+++ ++ G L A + + D IS+ +L+ + Y++ G
Sbjct: 531 MKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPD-IISWSSLI---VGYAQAGCG 586
Query: 406 KK 407
K+
Sbjct: 587 KE 588
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 154/345 (44%), Gaps = 41/345 (11%)
Query: 85 ITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE 144
+T L +AC+ L L +G+ +H + + + ++N +L MY KC + EA
Sbjct: 99 VTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEA------ 152
Query: 145 MGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
R +FD + K++V W SM+ G + + + A+ L
Sbjct: 153 --------------------------RNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITL 186
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
+ +M+ G PD S++ +CS L + + R +H +L++ D + ALI MY+K
Sbjct: 187 YVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTK 246
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNEATFVS 323
+ +A+ F + KD+++W +MI G + G EAL F +M + + +PNE F S
Sbjct: 247 FSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGS 306
Query: 324 VLAACRHSGLITEGCQLFRRMGGV---YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
+AC S L+ C R++ G+ + + + L D+ ++ G L A +
Sbjct: 307 AFSAC--SKLLEPDCG--RQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHI 362
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
D +++ A+++ + S + M G ++ VL
Sbjct: 363 EKPD-LVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVL 406
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 11/156 (7%)
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS-VLSACSSLSNLQYGR 237
DK I L + +H ++ +A ++F+K +P + V + +++ACSSL +L++GR
Sbjct: 67 DKIISLCKKNLH-----REALKAFDIFQKC---SSSPLKSVTYTHLINACSSLRSLEHGR 118
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+HR +L N D ++ ++ MY KCGSL+EA F K+VV+WT+MI G + YG
Sbjct: 119 KIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYG 178
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
+ A+ ++ QM R G P+ TF S++ +C SGL
Sbjct: 179 EEDNAITLYVQMLRSGHIPDHFTFGSIVKSC--SGL 212
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + K+ L+ DI V N+LI+ Y + AR +FD + D+ SW++L+ Y
Sbjct: 522 VGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYA 581
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG 103
E LF+ + G+ ++IT V + +AC+ + + G
Sbjct: 582 QAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEG 624
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 170/488 (34%), Positives = 267/488 (54%), Gaps = 32/488 (6%)
Query: 5 LHAHVTKTALDSDI-YVGNSLIHFYGRMALFTDARVLFDKMPFRD--------------- 48
LHA +T L S + V N +IH Y + L DAR FD +P +D
Sbjct: 126 LHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLG 185
Query: 49 ----------------VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFS 92
V SW L+S Y+ + E + F ++ +GI D++T++ L S
Sbjct: 186 LLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLS 245
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
ACA+L+ L +G+++H + G+ + AL+ MYAKC ++ A +FD +G R
Sbjct: 246 ACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQ 305
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
S N +I+GY + VD+AR +FD++ D+D+V + S++ G + + EAL LF +M
Sbjct: 306 SWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHD 365
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ D MVS+L+AC+SL L GR +H I Q + D ++ TAL+DMY KCG +EEA
Sbjct: 366 LRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEAS 425
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
+ F +DV TW+ MI GLA G+G AL F+ M+ G +PN T++++L AC HS
Sbjct: 426 LVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSC 485
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392
L+ EG F M ++ ++P IEH+ C++DLL R+GLL +A + ++ MP + + + ++
Sbjct: 486 LLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASI 545
Query: 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
LSAC + + +L + A +++KL YV L N Y W + ++ RR M+E +
Sbjct: 546 LSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVK 605
Query: 453 KKPGNSII 460
K G S I
Sbjct: 606 KAAGYSSI 613
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/375 (25%), Positives = 168/375 (44%), Gaps = 50/375 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH L+S + + R AL LFD+MP L + +
Sbjct: 26 GRLLHPPSASHLLNSLVNCFTPTDPLHLRYAL-----CLFDRMPCSTFLFDTALRACFRA 80
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACAR-------LEKLHYGKTVHCYATKVG 114
S LIL++++ G+ D T LF CAR + LH C+ T +
Sbjct: 81 SSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAA----CFRTMLP 136
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF 174
L + N ++ MY + +A R FD++ + + V+ +I+G + L+D A +
Sbjct: 137 SAVPL-VSNPIIHMYVELGLAGDARRAFDDIPVK-DAVAWTTVISGLAKLGLLDDAWCLL 194
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
++++ W ++ G +A + EA++ F M+ +G+ PDE ++ +LSAC+ L +L
Sbjct: 195 RHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLV 254
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT-------------------- 274
+GR +H+ + + + + ALIDMY+KCG + A
Sbjct: 255 FGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGY 314
Query: 275 ------------FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
F + + +D+VT+ ++I G + G EAL +F QM R ++ + T V
Sbjct: 315 CKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMV 374
Query: 323 SVLAACRHSGLITEG 337
S+L AC G + +G
Sbjct: 375 SLLTACASLGALPQG 389
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/273 (19%), Positives = 125/273 (45%), Gaps = 27/273 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IY 59
G+ LHA + + ++ DIY+G +L+ Y + +A ++F M RDV +W+ +++ +
Sbjct: 389 GRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAF 448
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY-- 117
N + L F + +G + +T + + +AC+ L G+ Y ++ L +
Sbjct: 449 NGMGKAA--LEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRL---YFEEMRLLHNI 503
Query: 118 --MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
++ ++ + + +DEA+ L M + N V +++ + +LAR +
Sbjct: 504 RPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAE 563
Query: 176 EIV----DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
++ D+D V + + + + ++Q E+A ++ + M + GV + S
Sbjct: 564 HLLKLEPDEDAV-YVQLYNIYIDSRQWEDASQIRRLMEERGV-----------KKAAGYS 611
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
++ VH+FI+ + TA+++ ++
Sbjct: 612 SITVAGQVHKFIVCDRTHPQIMEITAMMEEITR 644
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 163/461 (35%), Positives = 268/461 (58%), Gaps = 4/461 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD-ARVLFDKMPFRDVGSWNTLMSIYNDFS 63
+HA + KT L D + ++ F A + A ++F ++ ++ WNT++ ++ S
Sbjct: 15 IHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIRGFSQSS 74
Query: 64 DSGEVLILFKQLIFEGIV--ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ LF ++F ++T +F A A+L H G +H K+GLE +
Sbjct: 75 TPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFI 134
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+N +L MY C + EA R+FD + ++V+ N +I G +D +R +FD+++ ++
Sbjct: 135 QNTILNMYVNCGFLGEAQRIFDG-ATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRN 193
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W SM+ G V+ + EA+ELF +M +EG+ P E MVS+L+AC+ L L+ G +H
Sbjct: 194 TVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHD 253
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I++NN ++ V TA+IDMYSKCGS+++AL F K + W ++I GLA G GNE
Sbjct: 254 YIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNE 313
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+R+F ++E +KP+ +F+ VL AC H+G++ F M Y+++P+I+H+ C+V
Sbjct: 314 AVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMV 373
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L RAGLL +AEE IK MP I + +LLS+C Y ++ K+ A + +L
Sbjct: 374 DVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNESS 433
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+++LLSN YA H+ E E R ++KE Q K+PG S+I++
Sbjct: 434 SFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEV 474
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 154/372 (41%), Gaps = 83/372 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM----- 56
G LH V K L++D ++ N++++ Y +A+ +FD DV +WNT++
Sbjct: 116 GAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAK 175
Query: 57 -----------------------SIYNDFSDSG---EVLILFKQLIFEGIVADKITLVIL 90
S+ + + G E + LF ++ EGI + T+V L
Sbjct: 176 CGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSL 235
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
+ACA L L G+ +H Y K + A++ MY+KC +D+AL
Sbjct: 236 LNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKAL----------- 284
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+VF K + W S++ G + + EA+ LF K+
Sbjct: 285 ---------------------QVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLES 323
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ-DAFVK--TALIDMYSKCGS 267
+ PD + VL+AC+ + R F+L + + + +K + ++D+ + G
Sbjct: 324 SNLKPDHVSFIGVLTACNHAGMVD--RAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGL 381
Query: 268 LEEA--LVTFYKTDCKDVVTWTTMIEGLANYG---LGNEALRVFYQMERKGIKPNEAT-- 320
LEEA L+ + D + W +++ YG + +A + +++ PNE++
Sbjct: 382 LEEAEELIKSMPVN-PDAIIWGSLLSSCREYGNIEMAKQAAKRVNELD-----PNESSSF 435
Query: 321 --FVSVLAACRH 330
+V AA H
Sbjct: 436 ILLSNVYAAHNH 447
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 169/461 (36%), Positives = 249/461 (54%), Gaps = 35/461 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA K + V N+L+ YG DAR +FD+M RDV SW L+S +
Sbjct: 132 GRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECGDARRVFDEMASRDVVSWTALVSAFVR 191
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L+L Q+ +V ++ TL + AC RL GK VH + + + L +
Sbjct: 192 GGRFAEALVLVGQM---DVVPNEGTLACVLVACGRLGAARAGKAVHGWYLRRESDLKLIV 248
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NA+L MY KC+++ DLAR VFD ++ +D
Sbjct: 249 GNAVLDMYVKCEKL--------------------------------DLARRVFDRLLVRD 276
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W M+ G V+ K P +ALE+F +M V PD+ V+ +VLSAC+SL L+ GR VH
Sbjct: 277 VISWTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHE 336
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I + I D V T+L+DMY+KCG LE +L F K K++ +W +I G A +G G E
Sbjct: 337 YIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFALHGHGRE 396
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL F +M G+ PNE +F+ VL AC HSGL+ EG QLF M Y++ P EH+ +V
Sbjct: 397 ALEHFDRMVASGLAPNEVSFIIVLGACCHSGLVQEGLQLFESMKNSYKLSPWEEHYGSVV 456
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAGL+++A K MP ++ ALLSAC + + D +++ ++ +L +
Sbjct: 457 DLLGRAGLIHEAYSVTKAMPMRPAVFTWGALLSACQAHRQVDFSQQILRHVHELESSESG 516
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y LLSN YA+ W +V R M E +K+PG+S+I++
Sbjct: 517 VYALLSNIYAVNHRWADVKRVRGLMSEKGLQKEPGSSVIEV 557
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 145/322 (45%), Gaps = 49/322 (15%)
Query: 83 DKITLVILFSACARLEKLHY------GKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
D TL ACARL G+ VH A K G L + NAL+ +Y C E
Sbjct: 106 DGYTLPATLKACARLGAGGDDGGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECG 165
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+A R+FDEM SR D+V W +++ V+
Sbjct: 166 DARRVFDEMASR--------------------------------DVVSWTALVSAFVRGG 193
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
+ EAL L +M V P+E + VL AC L + G+ VH + L+ V
Sbjct: 194 RFAEALVLVGQM---DVVPNEGTLACVLVACGRLGAARAGKAVHGWYLRRESDLKLIVGN 250
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
A++DMY KC L+ A F + +DV++WT MI GL L ++AL VF +M++ +KP
Sbjct: 251 AVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEVFNEMQKSRVKP 310
Query: 317 NEATFVSVLAACRHSGLITEG---CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
++ +VL+AC G + G + R G ++ + LVD+ ++ G L +
Sbjct: 311 DKVVLSTVLSACTSLGALESGRWVHEYIERKG----IEWDVHVGTSLVDMYAKCGCLETS 366
Query: 374 EEFIKIMPAEDKFISYKALLSA 395
+ MP ++ S+ AL++
Sbjct: 367 LSIFRKMPLKN-LSSWNALING 387
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 160/465 (34%), Positives = 263/465 (56%), Gaps = 5/465 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA + DSD+ V +LI+ YG+ +AR +FDKM RD+ SWN ++ Y
Sbjct: 226 GRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQ 285
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D E L L+++L EG K T V + AC+ ++ L G+ VH + + GL+ + +
Sbjct: 286 NGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAV 345
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM---ELVDLAREVFDEIV 178
AL+ MYAKC ++EA ++F+ M R+ V+ + LI Y + AR+VFD +
Sbjct: 346 ATALVNMYAKCGSLEEARKVFNAM-KNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLG 404
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGR 237
+D + W +M+ V+ A+++F++M G+ PD ++VL AC+SL L +
Sbjct: 405 SRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVK 464
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H I ++ + + V LI+MY++CGSLEEA F K VV+WT M+ + YG
Sbjct: 465 ALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYG 524
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F +M+ +G+KP++ T+ S+L C H G + +G + F M ++ + PT +HF
Sbjct: 525 RYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHF 584
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
+VDLL R+G L+ A+E ++ MP E +++ L+AC + + +LG+ A + +L
Sbjct: 585 AAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDP 644
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
S Y+ +SN YA G W +VA R+ M+E +K PG S I++
Sbjct: 645 SSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEV 689
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/436 (27%), Positives = 198/436 (45%), Gaps = 70/436 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V + LDS + N+L+ Y R DA+ +F + RD SWN ++ ++
Sbjct: 126 GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQ 185
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D L +FK++ + + + T + + S + E L G+ +H G + L +
Sbjct: 186 SGDWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVV 244
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MY KC EA +FD+M +R++VS N++I Y
Sbjct: 245 ATALINMYGKCGSSHEAREVFDKM-KKRDMVSWNVMIGCY-------------------- 283
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V+ EALEL++K+ EG + VS+L ACSS+ L GRLVH
Sbjct: 284 -----------VQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHS 332
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
IL+ + + V TAL++MY+KCGSLEEA F +D V W+T+I A+ G G +
Sbjct: 333 HILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKD 392
Query: 302 ----------------------------------ALRVFYQME-RKGIKPNEATFVSVLA 326
A+++F +M G+KP+ TF++VL
Sbjct: 393 ARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLE 452
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC G ++E L ++ ++ + L+++ +R G L +AE E
Sbjct: 453 ACASLGRLSEVKALHAQI-SESELESNVVVTNTLINMYARCGSLEEAERLFAAAK-EKTV 510
Query: 387 ISYKALLSACITYSEF 402
+S+ A+++A Y +
Sbjct: 511 VSWTAMVAAFSQYGRY 526
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 189/396 (47%), Gaps = 40/396 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR--DVGSWNTLMSIY 59
G+ LH + + + D VGN+LI YG+ DAR +F+ M +R +V SWN +++ Y
Sbjct: 26 GRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAY 85
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
S E L+L+ ++ +G+ D +T V + AC+ L + G+ +H GL+
Sbjct: 86 AQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLDSFQ 142
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ NAL+ MYA+ + +A R+F + +
Sbjct: 143 SLANALVTMYARFGSVGDAKRMFQSLQT-------------------------------- 170
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D W +++ ++ AL +FK+M + + P+ ++V+S S+ L GR +
Sbjct: 171 RDETSWNAVILAHSQSGDWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKI 229
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H I+ N D V TALI+MY KCGS EA F K +D+V+W MI G
Sbjct: 230 HAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDF 289
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+EAL ++ +++ +G K +ATFVS+L AC + +G +L + +
Sbjct: 290 HEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEVAVATA 348
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
LV++ ++ G L +A + M D +++ L+ A
Sbjct: 349 LVNMYAKCGSLEEARKVFNAMKNRDA-VAWSTLIGA 383
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 139/321 (43%), Gaps = 38/321 (11%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D +T + + +C+ + G+ +H E + NAL+ MY KC + +A +F
Sbjct: 6 DNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVF 65
Query: 143 DEMGSR-RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
+ M R RN+VS W +M+ + EA
Sbjct: 66 ESMDWRQRNVVS-------------------------------WNAMIAAYAQNGHSTEA 94
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L L+ +M +G+ D VSVL ACSSL+ GR +H + + + + AL+ M
Sbjct: 95 LVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLDSFQSLANALVTM 151
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y++ GS+ +A F +D +W +I + G + ALR+F +M + +KPN T+
Sbjct: 152 YARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDMKPNSTTY 210
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
++V++ ++ EG ++ + + L+++ + G ++A E M
Sbjct: 211 INVISGFSTPEVLPEGRKIHAEI-VANGFDSDLVVATALINMYGKCGSSHEAREVFDKMK 269
Query: 382 AEDKFISYKALLSACITYSEF 402
D +S+ ++ + +F
Sbjct: 270 KRD-MVSWNVMIGCYVQNGDF 289
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 11/185 (5%)
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
PD ++VL +CSS ++ GR +H I + +D V ALI MY KC SL +A
Sbjct: 5 PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64
Query: 275 FYKTDC--KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F D ++VV+W MI A G EAL ++++M +G+ + TFVSVL AC
Sbjct: 65 FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS-- 122
Query: 333 LITEGCQLFRRM--GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+ +G ++ R+ G+ Q LV + +R G + A+ + + D+ S+
Sbjct: 123 -LAQGREIHNRVFYSGLDSFQSLAN---ALVTMYARFGSVGDAKRMFQSLQTRDE-TSWN 177
Query: 391 ALLSA 395
A++ A
Sbjct: 178 AVILA 182
>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 251/462 (54%), Gaps = 31/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K L SD++ G SL Y + AR +F + D+ +WN +++ +
Sbjct: 320 GRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFAS 379
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S++ E F Q+ G+V + +T++ L AC+ L++G VH Y K+G + +
Sbjct: 380 VSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPV 439
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+LL MY+KC +++AL++F+++G++ D
Sbjct: 440 CNSLLSMYSKCSNLNDALQVFEDIGNK-------------------------------AD 468
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W +++ C++ Q E L L K M + PD + +VL + +++ + G +H
Sbjct: 469 IVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHC 528
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
FI+++ + D V ALI+MY+KCGSLE A F D+++W+++I G A G G E
Sbjct: 529 FIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKE 588
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A +F M G+KPNE TFV +L AC H G++ EG +L+R M YR+ PT EH C+V
Sbjct: 589 AFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMV 648
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL+RAG L AE+FI+ MP + +K LL+AC + ++GK+ A N++K+ +
Sbjct: 649 DLLARAGCLDVAEDFIRQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSA 708
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A V+L N +A GHW + A R +M+ + K PG S I++K
Sbjct: 709 AVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIK 750
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 189/403 (46%), Gaps = 38/403 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H H+ D+ + N ++ YG+ +AR +FD MP ++V SW +++S Y+
Sbjct: 117 GRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSR 176
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + + L+ Q++ G + D T + +C+ L+ + +H + K L
Sbjct: 177 YGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIA 236
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+NAL+ MY K +M +A+ VF I+ KD
Sbjct: 237 QNALISMYTKFSQMADAI--------------------------------NVFSRIIIKD 264
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ W SM+ G + EAL F++M+ + V P+E V S SACS L GR +H
Sbjct: 265 LISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIH 324
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ + D F +L DMY+KCG LE A FY + D+V W +I G A+
Sbjct: 325 GLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAK 384
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC- 359
E+ F QM G+ PN+ T +S+L AC ++ G Q+ + ++ ++ VC
Sbjct: 385 ESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSY---IVKMGFNLDIPVCN 441
Query: 360 -LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
L+ + S+ L A + + + + +S+ LL+AC+ ++
Sbjct: 442 SLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQ 484
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/422 (25%), Positives = 187/422 (44%), Gaps = 65/422 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ + LHAHV K+ +D+ N+LI Y + + DA +F ++ +D+ SW ++++ ++
Sbjct: 217 LARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFS 276
Query: 61 DFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L F++++ + + ++ FSAC++L + G+ +H K GL L
Sbjct: 277 QLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDL 336
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+L MYAKC G+++ AR VF I
Sbjct: 337 FAGCSLCDMYAKC---------------------------GFLES-----ARTVFYHIEK 364
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W +++ G +E+ F +M G+ P++ ++S+L ACS L +G V
Sbjct: 365 PDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQV 424
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGL 298
H +I++ D V +L+ MYSKC +L +AL F K D+V+W T++
Sbjct: 425 HSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQ 484
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
E LR+ M IKP+ T +VL + SG I Y V I F+
Sbjct: 485 AGEVLRLTKLMFASRIKPDHVTLTNVLVS---SGQIAS-----------YEVGSQIHCFI 530
Query: 359 -------------CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
L+++ ++ G L A + + D IS+ +L+ + Y++ G
Sbjct: 531 MKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPD-IISWSSLI---VGYAQAGCG 586
Query: 406 KK 407
K+
Sbjct: 587 KE 588
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 154/346 (44%), Gaps = 41/346 (11%)
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
+T L +AC+ L L +G+ +H + + + ++N +L MY KC + EA
Sbjct: 98 SVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEA----- 152
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
R +FD + K++V W SM+ G + + + A+
Sbjct: 153 ---------------------------RNMFDSMPLKNVVSWTSMISGYSRYGEEDNAIT 185
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
L+ +M+ G PD S++ +CS L + + R +H +L++ D + ALI MY+
Sbjct: 186 LYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYT 245
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNEATFV 322
K + +A+ F + KD+++W +MI G + G EAL F +M + + +PNE F
Sbjct: 246 KFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFG 305
Query: 323 SVLAACRHSGLITEGCQLFRRMGGV---YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
S +AC S L+ C R++ G+ + + + L D+ ++ G L A
Sbjct: 306 SAFSAC--SKLLEPDCG--RQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYH 361
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
+ D +++ A+++ + S + M G ++ VL
Sbjct: 362 IEKPD-LVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVL 406
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 11/156 (7%)
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS-VLSACSSLSNLQYGR 237
DK I L + +H ++ +A ++F+K +P + V + +++ACSSL +L++GR
Sbjct: 67 DKIISLCKKNLH-----REALKAFDIFQKC---SSSPLKSVTYTHLINACSSLRSLEHGR 118
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+HR +L N D ++ ++ MY KCGSL+EA F K+VV+WT+MI G + YG
Sbjct: 119 KIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYG 178
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
+ A+ ++ QM R G P+ TF S++ +C SGL
Sbjct: 179 EEDNAITLYVQMLRSGHIPDHFTFGSIVKSC--SGL 212
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + K+ L+ DI V N+LI+ Y + AR +FD + D+ SW++L+ Y
Sbjct: 522 VGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYA 581
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG 103
E LF+ + G+ ++IT V + +AC+ + + G
Sbjct: 582 QAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEG 624
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 164/466 (35%), Positives = 262/466 (56%), Gaps = 5/466 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H + SD+ +GN+LI YG+ AR++F+ MPFRDV SW ++ S Y +
Sbjct: 98 KRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNC 157
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
E L F+++ G + +T+ + AC L+ L G+ VH + + G+ + +
Sbjct: 158 GLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVS 217
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
+AL+ MYA C + +A +FD M SRR+ VS N+LI Y + + VF ++ + +
Sbjct: 218 SALVNMYASCLSIRQAQLVFDSM-SRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGV 276
Query: 183 VL----WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
L W +++ GC++ + E+ALE+ +M + G P++ + SVL AC++L +L+ G+
Sbjct: 277 GLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQ 336
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H +I ++ QD TAL+ MY+KCG LE + F +D V+W TMI + +G
Sbjct: 337 IHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGN 396
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G EAL +F +M G++PN TF VL+ C HS L+ EG +F M + V+P +H
Sbjct: 397 GEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHS 456
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VD+LSRAG L +A EFIK MP E ++ ALL C Y +LG+ AN + ++ +
Sbjct: 457 CMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESD 516
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ YVLLSN W+E +E R+ M++ K PG S I +++
Sbjct: 517 NPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRN 562
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 148/349 (42%), Gaps = 72/349 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V + + +++V ++L++ Y A+++FD M RD SWN L++ Y
Sbjct: 198 GREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFL 257
Query: 62 FSDSGEVLILFKQLIFEGI-----------------------------------VADKIT 86
+ + L +F +++ EG+ ++IT
Sbjct: 258 NKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQIT 317
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+ + AC LE L GK +H Y + L AL+ MYAKC +++ + R+F M
Sbjct: 318 ITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMM- 376
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
++R+ VS N +I + MHG EEAL LF+
Sbjct: 377 TKRDTVSWNTMIIA--------------------------TSMHG-----NGEEALLLFR 405
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKC 265
+M+D GV P+ VLS CS + G L+ + ++ ++ DA + ++D+ S+
Sbjct: 406 EMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRA 465
Query: 266 GSLEEALVTFYKTDCKDVV-TWTTMIEGL---ANYGLGNEALRVFYQME 310
G LEEA K + W ++ G N LG A +++E
Sbjct: 466 GRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIE 514
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 116/253 (45%), Gaps = 13/253 (5%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACS 228
AR +FD+I D+ W ++ K + EA++ + + V PD+ +++SV AC+
Sbjct: 30 ARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACA 89
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
SL ++ + VH ++ D + ALIDMY KC E A + F +DV++WT+
Sbjct: 90 SLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTS 149
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR-----HSGLITEGCQLFRR 343
M N GL EAL F +M G +PN T S+L AC SG G +
Sbjct: 150 MASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNG 209
Query: 344 MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
MGG V LV++ + + QA+ M D +S+ L++A E +
Sbjct: 210 MGGNVFVSSA------LVNMYASCLSIRQAQLVFDSMSRRDT-VSWNVLITAYFLNKECE 262
Query: 404 LGKKVANNMMKLG 416
G V MM G
Sbjct: 263 KGLSVFGRMMSEG 275
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 105/247 (42%), Gaps = 15/247 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H ++ + D+ +L+ Y + +R +F M RD SWNT++ +
Sbjct: 334 GKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSM 393
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLN 120
+ E L+LF++++ G+ + +T + S C+ + G + + +E +
Sbjct: 394 HGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDAD 453
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAREVFDEI 177
+ ++ + ++ ++EA +M + L+ G Y ++EL +A EI
Sbjct: 454 HHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEI 513
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+ + + + V AK EA E K M D GVT + CS +Q
Sbjct: 514 ESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKN--------PGCSW---IQVRN 562
Query: 238 LVHRFIL 244
VH F++
Sbjct: 563 RVHTFVV 569
>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 990
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 169/464 (36%), Positives = 249/464 (53%), Gaps = 33/464 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H H K SD +V +LI Y R +A +LF++ F D+ +WN +M+ Y
Sbjct: 435 LSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYT 493
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D + L LF + +G +D TL +F C L ++ GK VH YA K G + L
Sbjct: 494 QSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLW 553
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ + +L MY KC +M A + FD I
Sbjct: 554 VSSGILDMYVKCGDMSAA--------------------------------QFAFDSIPVP 581
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V W +M+ GC++ + E A +F +M GV PDE + ++ A S L+ L+ GR +H
Sbjct: 582 DDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIH 641
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
L+ N T D FV T+L+DMY+KCGS+++A F + + ++ W M+ GLA +G G
Sbjct: 642 ANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGK 701
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
E L++F QM+ GIKP++ TF+ VL+AC HSGL++E + R M G Y ++P IEH+ CL
Sbjct: 702 ETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCL 761
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
D L RAGL+ QAE I+ M E Y+ LL+AC + + GK+VA +++L
Sbjct: 762 ADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDS 821
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
AYVLLSN YA W E+ AR MK + +K PG S I++K+
Sbjct: 822 SAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKN 865
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 118/488 (24%), Positives = 210/488 (43%), Gaps = 113/488 (23%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS----- 57
+ H + K LD D +V +L++ Y + + +VLF++MP+RDV WN ++
Sbjct: 165 ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEM 224
Query: 58 ------------------------------IYNDFSDSGEV------------------- 68
I D SD+G+V
Sbjct: 225 GFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRN 284
Query: 69 ---------------LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV 113
L F ++ + D++T +++ + +++ L G+ VHC A K+
Sbjct: 285 KGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKL 344
Query: 114 GLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
GL+ ML + N+L+ MY K LR F AR V
Sbjct: 345 GLDLMLTVSNSLINMYCK-------LRKFG-------------------------FARTV 372
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS-N 232
FD + ++D++ W S++ G + EA+ LF +++ G+ PD+ M SVL A SSL
Sbjct: 373 FDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEG 432
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L + VH ++ N D+FV TALID YS+ ++EA + F + + D+V W M+ G
Sbjct: 433 LSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAG 491
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
G++ L++F M ++G + ++ T +V C I +G Q+ Y ++
Sbjct: 492 YTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVH-----AYAIKS 546
Query: 353 --TIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
++ +V ++D+ + G + A+ +P D +++ ++S CI E + V
Sbjct: 547 GYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDD-VAWTTMISGCIENGEEERAFHV 605
Query: 409 ANNMMKLG 416
+ M +G
Sbjct: 606 FSQMRLMG 613
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 119/453 (26%), Positives = 198/453 (43%), Gaps = 42/453 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H K LD + V NSLI+ Y ++ F AR +FD M RD+ SWN++++
Sbjct: 333 LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIA 392
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL-EKLHYGKTVHCYATKVGLEYML 119
E + LF QL+ G+ D+ T+ + A + L E L K VH +A K+
Sbjct: 393 QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDS 452
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ AL+ Y++ + M EA LF+ R N
Sbjct: 453 FVSTALIDAYSRNRCMKEAEILFE----RHNF---------------------------- 480
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W +MM G ++ + L+LF M +G D+ + +V C L + G+ V
Sbjct: 481 -DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQV 539
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + +++ D +V + ++DMY KCG + A F D V WTTMI G G
Sbjct: 540 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEE 599
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV- 358
A VF QM G+ P+E T ++ A + +G Q+ ++ T + FV
Sbjct: 600 ERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIH---ANALKLNCTNDPFVG 656
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
LVD+ ++ G + A K + + ++ A+L + E ++ M LG
Sbjct: 657 TSLVDMYAKCGSIDDAYCLFKRIEMMN-ITAWNAMLVGLAQHGEGKETLQLFKQMKSLGI 715
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450
+ + V + H V+EA ++M+ +
Sbjct: 716 KPDK--VTFIGVLSACSHSGLVSEAYKHMRSMH 746
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 109/420 (25%), Positives = 195/420 (46%), Gaps = 50/420 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK HA + + + ++ N+LI Y + T AR +FDKMP RD+ SWN++++ Y
Sbjct: 57 LGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYA 116
Query: 61 DFSDS-----GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
S+ + +LF+ L + + ++TL + C + ++ H YA K+GL
Sbjct: 117 QSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGL 176
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM----ELVDLAR 171
+ + AL+ +Y K ++ E LF+EM R++V N+++ Y++M E +DL+
Sbjct: 177 DGDEFVAGALVNIYLKFGKVKEGKVLFEEM-PYRDVVLWNLMLKAYLEMGFKEEAIDLSS 235
Query: 172 EVF------DEIV----------DKDIVLWRSMMHGC------------------VKAKQ 197
+EI D D +S +G + + Q
Sbjct: 236 AFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQ 295
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
L+ F M++ V D+ + +L+ + +L G+ VH L+ + V +
Sbjct: 296 YSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNS 355
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LI+MY K A F +D+++W ++I G+A GL EA+ +F Q+ R G+KP+
Sbjct: 356 LINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPD 415
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMG-GVYRVQPTIEHFV--CLVDLLSRAGLLYQAE 374
+ T SVL A + + EG L +++ ++ + FV L+D SR + +AE
Sbjct: 416 QYTMTSVLKA---ASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAE 472
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 10/200 (5%)
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
LM KC + F+E R +N LI+ Y + AR VFD++ D+D+V W
Sbjct: 55 LMLGKCTH--ARILTFEENPER---FLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWN 109
Query: 187 SMMHGCVKAKQP-----EEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
S++ ++ + ++A LF+ + + V + +L C + H
Sbjct: 110 SILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHG 169
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + D FV AL+++Y K G ++E V F + +DVV W M++ G E
Sbjct: 170 YACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEE 229
Query: 302 ALRVFYQMERKGIKPNEATF 321
A+ + G+ PNE T
Sbjct: 230 AIDLSSAFHSSGLNPNEITL 249
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
S+L G+ H IL + F+ LI MYSKCGSL A F K +D+V+W ++
Sbjct: 53 SDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSI- 111
Query: 291 EGLANYGLGNE--------ALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
LA Y +E A +F + + + + T +L C HSG +
Sbjct: 112 --LAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161
>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 165/462 (35%), Positives = 250/462 (54%), Gaps = 31/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH K L D++ G SL Y + L + ARV+F ++ D+ +WN +++ +
Sbjct: 285 GRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAY 344
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D+ E + F Q+ +G++ D+IT+ L AC +L+ G VH Y K+GL+ + +
Sbjct: 345 GGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPV 404
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N LL MYAKC E+ +A+ F+EM + D
Sbjct: 405 CNTLLTMYAKCSELRDAIFFFEEMR-------------------------------CNAD 433
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ C++ Q EE L K M PD + +VL A + +++ G VH
Sbjct: 434 LVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHC 493
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ L+ + D V LID+Y+KCGSL+ A F DVV+W+++I G A +G G E
Sbjct: 494 YALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEE 553
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL++F M R +KPN TFV VL AC H GL+ EG +L+ M + + PT EH C+V
Sbjct: 554 ALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMV 613
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL+RAG L +AE FI M + + +K LL+AC T+ D+GK+ A N++K+ +
Sbjct: 614 DLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSA 673
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A+VLL N YA +G+W +VA R MK+ RK PG S I++K
Sbjct: 674 AHVLLCNIYASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVK 715
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/403 (29%), Positives = 200/403 (49%), Gaps = 38/403 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H H+ K+ D+ + N +++ YG+ DA+ +FD MP R+V SW ++++ Y+
Sbjct: 82 GKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQ 141
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
G L + Q++ G++ D+ T + AC+ L + G+ +H + K +
Sbjct: 142 NGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIA 201
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+NAL+ MY K + +AL +F M +R D
Sbjct: 202 QNALISMYTKSNLIIDALDVFSRMATR--------------------------------D 229
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ W SM+ G + EAL FK+M+ +GV P+E + SV SACSSL +YGR +H
Sbjct: 230 LISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLH 289
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ + +D F +L DMY+KCG L A V FY+ D+V W +I G A G
Sbjct: 290 GMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAK 349
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC- 359
EA+ F QM +G+ P+E T S+L AC + +G Q+ G + ++ ++ VC
Sbjct: 350 EAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVH---GYINKMGLDLDVPVCN 406
Query: 360 -LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
L+ + ++ L A F + M +S+ A+L+AC+ + +
Sbjct: 407 TLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQ 449
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 109/417 (26%), Positives = 191/417 (45%), Gaps = 53/417 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LHAHV K+ + I N+LI Y + L DA +F +M RD+ SW ++++ ++
Sbjct: 182 LGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFS 241
Query: 61 DFSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L FK+++ +G+ + ++ +FSAC+ L + YG+ +H + K GL +
Sbjct: 242 QLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDV 301
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+L MYAKC + A +F ++G
Sbjct: 302 FAGCSLCDMYAKCGLLSCARVVFYQIGR-------------------------------- 329
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W +++ G +EA+ F +M +G+ PDE + S+L AC+S S L G V
Sbjct: 330 PDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQV 389
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGL 298
H +I + + D V L+ MY+KC L +A+ F + C D+V+W ++ +
Sbjct: 390 HGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQ 449
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
E R+ M +P+ T +VL A + I G Q+ Y ++ +
Sbjct: 450 AEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVH-----CYALKTGLN--- 501
Query: 359 C-------LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
C L+DL ++ G L A + M D +S+ +L+ + Y++F G++
Sbjct: 502 CDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPD-VVSWSSLI---LGYAQFGYGEEA 554
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 165/369 (44%), Gaps = 74/369 (20%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T L SAC+ L L +GK +H + K L ++N +L MY KCK + +A
Sbjct: 65 TYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDA------- 117
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
++VFD + ++++V W S++ G + Q ALE +
Sbjct: 118 -------------------------QKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFY 152
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+M+ GV PD+ S++ ACSSL ++ GR +H +L++ + ALI MY+K
Sbjct: 153 FQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKS 212
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK-PNEATFVSV 324
+ +AL F + +D+++W +MI G + G EAL F +M +G+ PNE F SV
Sbjct: 213 NLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSV 272
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL-------YQ----- 372
+AC S L E + M + + + L D+ ++ GLL YQ
Sbjct: 273 FSACS-SLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPD 331
Query: 373 ----------------AEEFIK---------IMPAEDKFISYKALLSACITYSEFDLGKK 407
A+E I ++P E I+ ++LL AC + SE G +
Sbjct: 332 LVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDE---ITVRSLLCACTSPSELYQGMQ 388
Query: 408 VANNMMKLG 416
V + K+G
Sbjct: 389 VHGYINKMG 397
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 1/182 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + KT L+ D V N LI Y + A +FD M DV SW++L+ Y
Sbjct: 487 IGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYA 546
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYML 119
F E L LFK + + + +T V + +AC+ + + G ++ K G+
Sbjct: 547 QFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTR 606
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ ++ + A+ ++EA +M +IV L+ VD+ + + I+
Sbjct: 607 EHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILK 666
Query: 180 KD 181
D
Sbjct: 667 ID 668
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 165/468 (35%), Positives = 262/468 (55%), Gaps = 8/468 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V ++ D+++G +L+ Y + DAR +FD MP R+V SWN+L++ Y
Sbjct: 170 GEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQ 229
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLN 120
GE L+LF +++ G D++TL + SACA L G+ VH + K L +
Sbjct: 230 NGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMV 289
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC EA +FD M SR ++VS ++ GY V+ A+ VF ++V+K
Sbjct: 290 LNNALVDMYAKCGRTWEARCIFDSMPSR-SVVSETSILAGYAKSANVEDAQVVFSQMVEK 348
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+++ W ++ + + EEA+ LF ++ + + P +VL+AC +++ LQ G+ H
Sbjct: 349 NVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAH 408
Query: 241 RFILQNNIT------QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
+L+ D FV +L+DMY K GS+++ F + +D V+W MI G A
Sbjct: 409 VHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYA 468
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
G +AL +F +M P+ T + VL+AC HSGL+ EG + F M + + P+
Sbjct: 469 QNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSR 528
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+H+ C+VDLL RAG L +AEE IK MP E + + +LL AC + +LG++ A + +
Sbjct: 529 DHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFE 588
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
L ++ YVLLSN YA G W +V RR+MK+ K+PG S I++
Sbjct: 589 LDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEI 636
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 131/517 (25%), Positives = 216/517 (41%), Gaps = 111/517 (21%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
+ H V K+ + + ++ N+L+ Y R+ +AR +FD +P R+ S+N L+S Y
Sbjct: 36 ARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYAR 95
Query: 62 FSDSGEVLILFK------QLIFEGIVA---------------------------DKITLV 88
E LF+ Q + +VA + +
Sbjct: 96 LGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFA 155
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
SACA + L G+ VH + +++ AL+ MYAKC+ +A R+FD M
Sbjct: 156 SALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAM-PE 214
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP-EEALELFKK 207
RN+VS N LI C + P EAL LF +
Sbjct: 215 RNVVSWNSLIT--------------------------------CYEQNGPVGEALVLFVE 242
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCG 266
M+ G PDE + SV+SAC+ L+ + GR VH + ++ + D + AL+DMY+KCG
Sbjct: 243 MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 302
Query: 267 -------------------------------SLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
++E+A V F + K+V+ W +I A
Sbjct: 303 RTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ 362
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM---GGVYRVQP 352
G EA+R+F Q++R I P T+ +VL AC + ++ G Q + G + P
Sbjct: 363 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGP 422
Query: 353 TIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
+ FV LVD+ + G + + + M A D +S+ A++ + Y++ K +
Sbjct: 423 ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDN-VSWNAMI---VGYAQNGRAKDALH 478
Query: 411 --NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
M N++ ++ ++ A GH V E RR+
Sbjct: 479 LFERMLCSNENPDSVTMIGVLSAC-GHSGLVDEGRRH 514
>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
Length = 685
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 172/469 (36%), Positives = 263/469 (56%), Gaps = 10/469 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA VTK++ SD+Y+G +L+ Y + +A+ +FD MP R++ SWN+L++ Y
Sbjct: 166 GEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQ 225
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL--EYML 119
E L LF +++ +G V D++TL + SACA L G+ VH K E M+
Sbjct: 226 NGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMV 285
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NAL+ MYAKC EA +FD M + R++VS +I GY V A+ VF ++V+
Sbjct: 286 -LNNALVDMYAKCGRTWEAKCVFDRM-AIRSVVSETSMITGYAKSANVGDAQAVFLQMVE 343
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K++V W ++ + EEAL LF ++ E V P +VL+AC++L+NLQ G+
Sbjct: 344 KNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQA 403
Query: 240 HRFILQNNIT------QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
H +L+ D FV +L+DMY K GS+ + F + +D V+W MI G
Sbjct: 404 HVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGY 463
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A G +AL +F +M +P+ T + VL+AC HSGL+ EG + F+ M + + PT
Sbjct: 464 AQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPT 523
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
+H+ C++DLL RAG L + EE I+ MP E + + +LL AC + D+G+ A +
Sbjct: 524 RDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLF 583
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+L + YVLLSN YA G W +V RR+MK K+PG S I++
Sbjct: 584 ELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEI 632
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 134/503 (26%), Positives = 210/503 (41%), Gaps = 107/503 (21%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILF---- 72
+ ++ N+L+ Y R+ DAR +FD MP R+ S+N L+S + + L LF
Sbjct: 49 ETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIP 108
Query: 73 --KQLIFEGIVA-------------------------DKITLVILFSACARLEKLHYGKT 105
Q + +VA + + SACA + G+
Sbjct: 109 DPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQ 168
Query: 106 VHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME 165
VH TK + + AL+ MYAKC+ +EA ++FD M RNIVS N LI Y
Sbjct: 169 VHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAM-PERNIVSWNSLITCYEQNG 227
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS 225
VD EAL LF +M+ +G PDE + SV+S
Sbjct: 228 PVD-------------------------------EALALFVRMMKDGFVPDEVTLASVMS 256
Query: 226 ACSSLSNLQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
AC+ L+ + GR VH R + + +D + AL+DMY+KCG EA F + + VV
Sbjct: 257 ACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVV 316
Query: 285 TWTTMIEGL---ANYGLGN----------------------------EALRVFYQMERKG 313
+ T+MI G AN G EALR+F +++R+
Sbjct: 317 SETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRES 376
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRM---GGVYRVQPTIEHFV--CLVDLLSRAG 368
+ P T+ +VL AC + + G Q + G + P + FV LVD+ + G
Sbjct: 377 VWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTG 436
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK--VANNMMKLGNQSHEAYVLL 426
+ + + M A D +S+ A++ + Y++ K + M N+ ++ ++
Sbjct: 437 SISDGAKVFERMAARDN-VSWNAMI---VGYAQNGRAKDALLLFERMLCSNERPDSVTMI 492
Query: 427 SNFYALEGHWTEVAEARRNMKEL 449
A GH V E RR + +
Sbjct: 493 GVLSAC-GHSGLVKEGRRYFQSM 514
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 180/528 (34%), Positives = 269/528 (50%), Gaps = 68/528 (12%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H H K SD+ VGN+LIH Y + DAR++FD M RDV SWN ++
Sbjct: 254 KEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQN 313
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
E +F ++ EG V D T + L + + K VH +A +VGL L +
Sbjct: 314 GCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVG 373
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRR--------------------------------- 149
+A + MY +C +D+A +FD++ R
Sbjct: 374 SAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFF 433
Query: 150 -------NIVSLNI---------LINGY-IDMELVDL------------------AREVF 174
NI+S N+ ++ Y ID LVDL A++VF
Sbjct: 434 PDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVF 493
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
D++V++++ W M+ G + EA LF +M+ EG+ PD VS+LSAC+S L+
Sbjct: 494 DDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALE 553
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
+ + VH + + D V AL+ MY+KCGS+++A F +DV +WT MI GLA
Sbjct: 554 WVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLA 613
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
+G G +AL +F +M+ +G KPN +FV+VL+AC H+GL+ EG + F + Y ++PT+
Sbjct: 614 QHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTM 673
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
EH+ C+VDLL RAG L +A+ FI MP E + ALL AC+TY ++ + A +K
Sbjct: 674 EHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLK 733
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
L +S YVLLSN YA G+W + R M+ RK+PG S I++
Sbjct: 734 LKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEV 781
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 159/327 (48%), Gaps = 34/327 (10%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H+H L D+ VGN+L+H Y + DARV+FD M RD+ SW ++
Sbjct: 151 KEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQH 210
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACA--RLEKLHYGKTVHCYATKVGLEYMLN 120
E LF Q+ G + + T + + +A A L + K VH +A K G L
Sbjct: 211 GRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLR 270
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC +D+A +FD M D+
Sbjct: 271 VGNALIHMYAKCGSIDDARLVFDGM--------------------------------CDR 298
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D++ W +M+ G + EA +F KM EG PD +S+L+ S ++ + VH
Sbjct: 299 DVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVH 358
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ ++ + D V +A + MY +CGS+++A + F K ++V TW MI G+A G
Sbjct: 359 KHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGR 418
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAA 327
EAL +F QM R+G P+ TFV++L+A
Sbjct: 419 EALSLFLQMRREGFFPDATTFVNILSA 445
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 165/326 (50%), Gaps = 34/326 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HAH+ ++ SD+ V +L++ Y + DA+++FDKM R+V SW ++
Sbjct: 49 GKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAH 108
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E F Q+ EG + + T V + +A A L + K VH +A GL L +
Sbjct: 109 YGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRV 168
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MYAK +D+A R VFD +V++D
Sbjct: 169 GNALVHMYAKSGSIDDA--------------------------------RVVFDGMVERD 196
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL--SACSSLSNLQYGRLV 239
I W M+ G + + +EA LF +M G P+ +S+L SA +S L++ + V
Sbjct: 197 IFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEV 256
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H+ + D V ALI MY+KCGS+++A + F +DV++W MI GLA G G
Sbjct: 257 HKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCG 316
Query: 300 NEALRVFYQMERKGIKPNEATFVSVL 325
+EA +F +M+++G P+ T++S+L
Sbjct: 317 HEAFTIFLKMQQEGFVPDSTTYLSLL 342
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 136/269 (50%), Gaps = 32/269 (11%)
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y ++ + + + ++ Q+ EG ++IT + + AC L +GK +H + + G +
Sbjct: 5 YAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSD 64
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ +E AL+ MY KC +D+ A+ +FD++V
Sbjct: 65 VRVETALVNMYVKCGSIDD--------------------------------AQLIFDKMV 92
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+++++ W M+ G + +EA F +M EG P+ VS+L+A +S L++ +
Sbjct: 93 ERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKE 152
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH + + D V AL+ MY+K GS+++A V F +D+ +WT MI GLA +G
Sbjct: 153 VHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGR 212
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAA 327
G EA +F QMER G PN T++S+L A
Sbjct: 213 GQEAFSLFLQMERGGCLPNLTTYLSILNA 241
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 95/147 (64%)
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247
M+ G + E+A++++ +M EG P+E +S+L AC S +L++G+ +H I+Q+
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
D V+TAL++MY KCGS+++A + F K ++V++WT MI GLA+YG G EA F
Sbjct: 61 FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLI 334
QM+R+G PN T+VS+L A +G +
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGAL 147
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 167/463 (36%), Positives = 254/463 (54%), Gaps = 34/463 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+G+ A+ K L +D +V +SLIH Y AR++FD V WN +++ Y
Sbjct: 138 VGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYL 197
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D EV+ +FK ++ G+ D++TLV + +AC R+ GK V + + GL
Sbjct: 198 KNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPK 257
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAKC E+ +A R +FD + +
Sbjct: 258 LVTALMDMYAKCGEIGKA--------------------------------RRLFDGMQSR 285
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ G +A Q EAL LF +M V P++ MVSVLSAC+ L L+ G+ VH
Sbjct: 286 DVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVH 345
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ + ++ + TAL+D Y+KCG +++A+ F K+ TWT +I+G+A G G
Sbjct: 346 SYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGR 405
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F M GI+P + TF+ VL AC HS L+ EG + F M Y ++P +EH+ C+
Sbjct: 406 EALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCM 465
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGL+ +A +FI+ MP E + ++ALLS+C + +G++ ++ L N SH
Sbjct: 466 VDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISL-NPSH 524
Query: 421 EA-YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA G W + A R+ MK+ K PG S+I+L
Sbjct: 525 SGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIEL 567
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 165/359 (45%), Gaps = 42/359 (11%)
Query: 45 PFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIF--EGIVADKITLVILFSACARLEKLHY 102
P +N LM + + L LF +++ AD+ T +C+R+ L
Sbjct: 79 PPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDV 138
Query: 103 GKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI 162
G+ V YA K GL + ++L+ MYA C +
Sbjct: 139 GRGVQAYAVKRGLVADRFVLSSLIHMYASCGD---------------------------- 170
Query: 163 DMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS 222
V AR VFD + +V+W +++ +K E +E+FK M++ GV DE +VS
Sbjct: 171 ----VAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVS 226
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
V++AC + + + G+ V + + + ++ + TAL+DMY+KCG + +A F +D
Sbjct: 227 VVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRD 286
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL-- 340
VV W+ MI G EAL +F +M+ ++PN+ T VSVL+AC G + G +
Sbjct: 287 VVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHS 346
Query: 341 -FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT 398
RR R+ T LVD ++ G + A E + MP ++ + ++ AL+ T
Sbjct: 347 YVRRK----RLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSW-TWTALIKGMAT 400
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 15/225 (6%)
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMID--EGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
VL R+ +H A PE+AL LF +M+ D+ L +CS + L GR V
Sbjct: 88 VLMRAFLH----AGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQ 143
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ ++ + D FV ++LI MY+ CG + A + F + VV W ++ G
Sbjct: 144 AYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWM 203
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG--GVYRVQPTIEHFV 358
E + +F M G+ +E T VSV+ AC G G + + G+ R P +
Sbjct: 204 EVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLAR-NPKL--VT 260
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
L+D+ ++ G + +A M + D +++ A++S Y++ D
Sbjct: 261 ALMDMYAKCGEIGKARRLFDGMQSRD-VVAWSAMISG---YTQAD 301
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 263/462 (56%), Gaps = 1/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +HA K + S V N++++ Y L T AR +FD + R + SWN++++ Y+
Sbjct: 152 LGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYS 211
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E +++F+++ G+ D TLV L S + G+ VH + G+E
Sbjct: 212 KMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSI 271
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC + A +FD+M +++VS +IN Y + L+D A E F+++ K
Sbjct: 272 VTNALMDMYAKCGNLKCAKSVFDQM-LDKDVVSWTCMINAYANHGLIDCALEFFNQMPGK 330
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++V W S++ V+ EA++LF +M D GV ++ +V++LS+CS + +L G+ H
Sbjct: 331 NVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAH 390
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I NNIT A + A+IDMY+KCG+L+ A+ F+ K+ V+W +I LA +G G
Sbjct: 391 SYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGK 450
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EA+ +F +M+ G+ P+E TF +L+AC HSGL+ G F M + + P +EH+ C+
Sbjct: 451 EAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACM 510
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL R GLL +A IK MP + + + ALL AC TY +GK++ +++LG +
Sbjct: 511 VDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNS 570
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN Y+ W ++ + + + +K S I++
Sbjct: 571 GLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAISFIEI 612
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/426 (26%), Positives = 200/426 (46%), Gaps = 69/426 (16%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HA + L + + L+ ++ A LFD++P + +N L+ Y++
Sbjct: 53 KHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNS 112
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
SD + L+L+++++ +GI+ ++ T+ + ACA G VH + K+G+ ++
Sbjct: 113 SDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQ 172
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
NA+L +Y C + A R+FD++ S R +VS N +INGY M
Sbjct: 173 NAILNIYVACGLITSARRVFDDI-SERTLVSWNSMINGYSKM------------------ 213
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
+ EEA+ +F++M + G+ PD +V +LS + N GR VH
Sbjct: 214 -------------GRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLH 260
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN-- 300
++ I D+ V AL+DMY+KCG+L+ A F + KDVV+WT MI AN+GL +
Sbjct: 261 MVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCA 320
Query: 301 -----------------------------EALRVFYQMERKGIKPNEATFVSVLAACRHS 331
EA+ +FY+M G+ N+ T V++L++C H
Sbjct: 321 LEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHM 380
Query: 332 GLITEGCQLFRRMGGVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
G + G Q ++ T+ +C ++D+ ++ G L A + MP E +S+
Sbjct: 381 GDLALGKQAHSY---IFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMP-EKNAVSW 436
Query: 390 KALLSA 395
++ A
Sbjct: 437 NVIIGA 442
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 166/468 (35%), Positives = 261/468 (55%), Gaps = 8/468 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V ++ D+++ ++L+ Y + DAR +FD MP R+V SWN+L++ Y
Sbjct: 170 GEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQ 229
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLN 120
GE L+LF +++ G D++TL + SACA L G+ VH + K L +
Sbjct: 230 NGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMV 289
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC EA +FD M SR +IVS ++ GY V+ A+ VF ++V+K
Sbjct: 290 LNNALVDMYAKCGRTWEARCIFDSMPSR-SIVSETSILTGYAKSANVEDAQVVFSQMVEK 348
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+++ W ++ + + EEA+ LF ++ + + P +VL+AC ++++LQ G+ H
Sbjct: 349 NVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAH 408
Query: 241 RFILQNNIT------QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
+L+ D FV +L+DMY K GS+++ F + +D V+W MI G A
Sbjct: 409 VHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYA 468
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
G +AL +F +M P+ T + VL+AC HSGL+ EG + F M + + P+
Sbjct: 469 QNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSR 528
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+H+ C+VDLL RAG L +AEE I MP E + + +LL AC + +LG+ A + +
Sbjct: 529 DHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHKNVELGEWTAGRLFE 588
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
L Q+ YVLLSN YA G W EV RR+MK+ K+PG S I++
Sbjct: 589 LDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWIEI 636
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 131/516 (25%), Positives = 219/516 (42%), Gaps = 111/516 (21%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
+ HA + K+ + + ++ N+L+ Y R+ DAR +FD++P R+ S+N L+S Y
Sbjct: 36 ARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYAR 95
Query: 62 FSDSGEVLILFK------QLIFEGIVA---------------------------DKITLV 88
E LF+ Q + +VA + +
Sbjct: 96 LGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFA 155
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
SACA + G+ VH + +++ +AL+ MYAKC+ ++A R+FD M
Sbjct: 156 SALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAM-PE 214
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP-EEALELFKK 207
RN+VS N LI C + P EAL LF +
Sbjct: 215 RNVVSWNSLIT--------------------------------CYEQNGPVGEALMLFVE 242
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NNITQDAFVKTALIDMYSKCG 266
M+ G +PDE + SV+SAC+ L+ + GR VH +++ + + D + AL+DMY+KCG
Sbjct: 243 MMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCG 302
Query: 267 -------------------------------SLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
++E+A V F + K+V+ W +I A
Sbjct: 303 RTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ 362
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM---GGVYRVQP 352
G EA+R+F Q++R I P T+ +VL AC + + G Q + G + P
Sbjct: 363 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGP 422
Query: 353 TIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
+ FV LVD+ + G + + + M A D +S+ A++ + Y++ K +
Sbjct: 423 ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDN-VSWNAMI---VGYAQNGRAKDALH 478
Query: 411 --NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444
M N++ ++ ++ A GH V E RR
Sbjct: 479 LFERMLCSNENPDSVTMIGVLSAC-GHSGLVDEGRR 513
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 164/462 (35%), Positives = 260/462 (56%), Gaps = 3/462 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL--FTDARVLFDKMPFRDVGSWNTLMSIYN 60
K +H + K + L+ Y M T AR++FD++ + WNT++ Y+
Sbjct: 28 KQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYS 87
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ +D E L+L+ Q++ I + T L AC+ L L +H K G +
Sbjct: 88 NSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVY 147
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
N+LL +YA + A LFD + SR +IVS N +I+GYI V++A ++F + +K
Sbjct: 148 ATNSLLRVYAISGSIKSAHVLFDLLPSR-DIVSWNTMIDGYIKCGNVEMAYKIFQAMPEK 206
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+++ W SM+ G V+ +EAL L ++M+ G+ PD+ + LSAC+ L L+ G+ +H
Sbjct: 207 NVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIH 266
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I +N I D + ALIDMY KCG +++AL+ F K + K V TWT +I G A +G G+
Sbjct: 267 TYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGS 326
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL F QM++ GIKP TF +VL AC H+GL+ EG LF M Y ++P +EH+ C+
Sbjct: 327 EALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCM 386
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +A+EF++ MP + + +LL+AC + +LGK++ +++L +
Sbjct: 387 VDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEHD 446
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+ L++ +A G W E ++ R ++K PG S I L
Sbjct: 447 GRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGCSTITL 488
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 78/181 (43%), Gaps = 1/181 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H ++ K + D +G +LI Y + A ++F K+ + V +W ++ +
Sbjct: 262 GKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAV 321
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLN 120
E L F Q+ GI T + +AC+ + GK++ +T ++ ++
Sbjct: 322 HGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVME 381
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++ + + + EA + M + N L+N + ++L +E+ +++
Sbjct: 382 HYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIEL 441
Query: 181 D 181
D
Sbjct: 442 D 442
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 164/457 (35%), Positives = 255/457 (55%), Gaps = 1/457 (0%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HA +T D +VG +L Y D R +FD M RDV SW ++ Y +
Sbjct: 173 HALAVRTGALDDGFVGTALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNY 232
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
E L+LF ++ G+V D++ L + AC + L GK +H Y + ++ +AL
Sbjct: 233 KEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSAL 292
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+ +YA C M+ A +L++EM R+++VS +++GY V++AR +FD + +KD+V W
Sbjct: 293 ISLYASCANMEMAEKLYNEM-PRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSW 351
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+M+ G V + QP EAL LF M + G+ DE M+SV+SAC++L +L + +H FI
Sbjct: 352 SAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKN 411
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
+ + + + ALIDM++KCG + AL F + K+V+TWT+MI A +G G +LR+
Sbjct: 412 SGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRL 471
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F QM+ +G +PNE TF+S+L AC H+GL+ EG LF M Y ++P EH+ C+VDLL
Sbjct: 472 FEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEHYGCMVDLLG 531
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
RA L+ +A I+ M E + +LL+AC + + LG A +++L A VL
Sbjct: 532 RAKLMQEAVSLIESMHLEPNVPIWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGASVL 591
Query: 426 LSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
L Y + E R MK + K+ G S ++L
Sbjct: 592 LLKIYMKSDNLNNAQEVRGVMKLHRVSKETGLSWMEL 628
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 1/150 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HA + + L+ +++ N+LI + + A +F++MP ++V +W +++S +
Sbjct: 403 KWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMH 462
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLNM 121
D L LF+Q+ EG +++T + L AC +H G+ + + G+E
Sbjct: 463 GDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEH 522
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNI 151
++ + + K M EA+ L + M N+
Sbjct: 523 YGCMVDLLGRAKLMQEAVSLIESMHLEPNV 552
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%)
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
Y H ++ D FV TAL Y+ CG + + F +DVV+W M++
Sbjct: 168 YVAATHALAVRTGALDDGFVGTALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYC 227
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
EAL +F +M+ G+ P++ +VL AC H
Sbjct: 228 QTRNYKEALLLFAKMKNSGVVPDQLILATVLPACGH 263
>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 855
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 158/462 (34%), Positives = 246/462 (53%), Gaps = 31/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K L +++ G SL Y + A F ++ D+ SWN +++ ++D
Sbjct: 379 GRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSD 438
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D E + F Q++ G++ D IT + L AC ++ G +H Y K+GL+ +
Sbjct: 439 SGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAV 498
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+LL MY KC + +A +F ++ N+VS
Sbjct: 499 CNSLLTMYTKCSNLHDAFNVFKDVSENANLVS---------------------------- 530
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
W +++ C++ KQ E LFK M+ PD + ++L C+ L++L+ G VH
Sbjct: 531 ---WNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHC 587
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F +++ + D V LIDMY+KCGSL+ A F T D+V+W+++I G A +GLG+E
Sbjct: 588 FSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHE 647
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M+ G++PNE T++ VL+AC H GL+ EG + M + PT EH C+V
Sbjct: 648 ALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMV 707
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL+RAG LY+AE FIK M +K LL++C T+ D+ ++ A N++KL +
Sbjct: 708 DLLARAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSA 767
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A VLLSN +A G+W EVA R MK++ +K PG S I +K
Sbjct: 768 ALVLLSNIHASVGNWKEVARLRNLMKQMGVQKVPGQSWIAVK 809
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/403 (28%), Positives = 193/403 (47%), Gaps = 38/403 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H H+ K+ D+ + N +++ YG+ DAR FD M R+V SW ++S Y+
Sbjct: 176 GKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQ 235
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ +I++ Q++ G D +T + AC + G+ +H + K G ++ L
Sbjct: 236 NGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIA 295
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+NAL+ MY + ++ A +VF I KD
Sbjct: 296 QNALISMYTRFGQIVHA--------------------------------SDVFTMISTKD 323
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ W SM+ G + EAL LF+ M +G P+E + SV SAC SL ++GR +H
Sbjct: 324 LISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIH 383
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + ++ F +L DMY+K G L A+ FY+ + D+V+W +I ++ G N
Sbjct: 384 GMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVN 443
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC- 359
EA+ F QM G+ P+ TF+S+L AC I +G Q+ + ++ E VC
Sbjct: 444 EAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSY---IIKIGLDKEAAVCN 500
Query: 360 -LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
L+ + ++ L+ A K + +S+ A+LSAC+ + +
Sbjct: 501 SLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQ 543
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 106/432 (24%), Positives = 191/432 (44%), Gaps = 46/432 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH HV K+ D + N+LI Y R A +F + +D+ SW ++++ +
Sbjct: 276 LGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFT 335
Query: 61 DFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L LF+ + +G ++ +FSAC L + +G+ +H K GL +
Sbjct: 336 QLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNV 395
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+L MYAK + A+R F +I
Sbjct: 396 FAGCSLCDMYAKFGFLPSAIR--------------------------------AFYQIES 423
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W +++ + EA+ F +M+ G+ PD +S+L AC S + G +
Sbjct: 424 PDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQI 483
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK-TDCKDVVTWTTMIEGLANYGL 298
H +I++ + ++A V +L+ MY+KC +L +A F ++ ++V+W ++ +
Sbjct: 484 HSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQ 543
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL--FRRMGGVYRVQPTIEH 356
E R+F M KP+ T ++L C + G Q+ F G+ V ++ +
Sbjct: 544 AGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLV-VDVSVSN 602
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN--NMMK 414
L+D+ ++ G L A + D +S+ +L+ + Y++F LG + N MMK
Sbjct: 603 R--LIDMYAKCGSLKHARDVFGSTQNPD-IVSWSSLI---VGYAQFGLGHEALNLFRMMK 656
Query: 415 -LGNQSHEAYVL 425
LG Q +E L
Sbjct: 657 NLGVQPNEVTYL 668
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 139/307 (45%), Gaps = 35/307 (11%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L AC + L YGK +H + K + L ++N +L MY KC + +A + FD M R
Sbjct: 163 LILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTM-QLR 221
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N+VS I+I+GY + Q +A+ ++ +M+
Sbjct: 222 NVVSWTIMISGY-------------------------------SQNGQENDAIIMYIQML 250
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
G PD S++ AC ++ GR +H ++++ + ALI MY++ G +
Sbjct: 251 QSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIV 310
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNEATFVSVLAAC 328
A F KD+++W +MI G G EAL +F M R+G +PNE F SV +AC
Sbjct: 311 HASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSAC 370
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
R S L E + M + + + L D+ ++ G L A + + D +S
Sbjct: 371 R-SLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPD-LVS 428
Query: 389 YKALLSA 395
+ A+++A
Sbjct: 429 WNAIIAA 435
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 111/207 (53%), Gaps = 11/207 (5%)
Query: 194 KAKQPEEALELFK-KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252
K + EAL+ F + + + +++ AC+S+ +L+YG+ +H IL++N D
Sbjct: 133 KQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDL 192
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
++ +++MY KCGSL++A F ++VV+WT MI G + G N+A+ ++ QM +
Sbjct: 193 VLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQS 252
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAG 368
G P+ TF S++ AC +G I G QL + ++ +H + L+ + +R G
Sbjct: 253 GYFPDPLTFGSIIKACCIAGDIDLGRQLHGHV-----IKSGYDHHLIAQNALISMYTRFG 307
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSA 395
+ A + ++ +D IS+ ++++
Sbjct: 308 QIVHASDVFTMISTKD-LISWASMITG 333
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 5/184 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H K+ L D+ V N LI Y + AR +F D+ SW++L+ Y
Sbjct: 581 VGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYA 640
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT---KVGLEY 117
F E L LF+ + G+ +++T + + SAC+ + + G H Y T ++G+
Sbjct: 641 QFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEG--WHFYNTMEIELGIPP 698
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ ++ + A+ + EA +MG +I L+ VD+A + I
Sbjct: 699 TREHVSCMVDLLARAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDIAERAAENI 758
Query: 178 VDKD 181
+ D
Sbjct: 759 LKLD 762
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 166/470 (35%), Positives = 262/470 (55%), Gaps = 8/470 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H+ V ++ SD+Y+G++L+ Y + A+ +FD+M R SWN+L++ Y
Sbjct: 169 LGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYE 228
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYML 119
E L +F ++I G+ D++TL + SACA + + G+ +H K L
Sbjct: 229 QNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDL 288
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NALL MYAKC ++EA +FD M R++VS +++GY V +AR +F ++
Sbjct: 289 ILGNALLDMYAKCNRINEARIIFDMM-PIRSVVSETSMVSGYAKASKVKVARYMFSNMMV 347
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KD++ W +++ GC + + EEAL LF+ + E V P ++L+AC++L++LQ GR
Sbjct: 348 KDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQA 407
Query: 240 HRFILQNNIT------QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
H +L++ D FV +LIDMY KCGS+E F KD V+W MI G
Sbjct: 408 HSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGY 467
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A G GN+AL VF +M G P+ T + VL AC H+GL+ EG FR M + + P
Sbjct: 468 AQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPL 527
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
+H+ C+VDLL RAG L +A+ I+ M + I + +LL+AC + LG+ V ++
Sbjct: 528 KDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLL 587
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++ ++ YVLLSN YA W V R+ M++ K+PG S I+++
Sbjct: 588 EVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQ 637
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 168/343 (48%), Gaps = 2/343 (0%)
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
L K L + + D L + CAR VH K ++N L+ +Y
Sbjct: 6 LVKHLKGDLLFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYG 65
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
KC +D A +LFD M RNI S N +I + +D A +F+++ D W SM+
Sbjct: 66 KCGCVDVARKLFDRM-LERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMIS 124
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
G + + +EAL F +M G +E S LSAC+ L +L+ G +H + ++N
Sbjct: 125 GFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLS 184
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
D ++ +AL+DMYSKCG +E A F + + V+W ++I G +EAL++F +M
Sbjct: 185 DVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMI 244
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370
+ G++P+E T SV++AC I EG Q+ R+ + + L+D+ ++ +
Sbjct: 245 KCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRI 304
Query: 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
+A +MP +S +++S S+ + + + +NMM
Sbjct: 305 NEARIIFDMMPIR-SVVSETSMVSGYAKASKVKVARYMFSNMM 346
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 158/347 (45%), Gaps = 64/347 (18%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFK 73
L+ +I+ NS+I + + DA +F+KMP D SWN+++S + E L+ F
Sbjct: 81 LERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFA 140
Query: 74 QLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
Q+ G + ++ + SACA L+ L G +H + + M +AL+ MY+KC
Sbjct: 141 QMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCG 200
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
++ A +FDEM + R+ VS N LI Y VD
Sbjct: 201 RVEYAQSVFDEM-TVRSRVSWNSLITCYEQNGPVD------------------------- 234
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH-RFILQNNITQDA 252
EAL++F +MI GV PDE + SV+SAC+++S ++ G+ +H R + + D
Sbjct: 235 ------EALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDL 288
Query: 253 FVKTALIDMYSKCGSLEEALVT-------------------------------FYKTDCK 281
+ AL+DMY+KC + EA + F K
Sbjct: 289 ILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVK 348
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
DV+TW +I G G EAL +F ++R+ + P TF ++L AC
Sbjct: 349 DVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNAC 395
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 164/462 (35%), Positives = 251/462 (54%), Gaps = 33/462 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+H+++ SD+ +GN+LI Y R AR LF MP RD+ SWN +++ Y
Sbjct: 349 GKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYAR 408
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D GE + L+KQ+ EG+ ++T + L SACA GK +H + G++ ++
Sbjct: 409 REDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHL 468
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY +C + EA + VF+ +D
Sbjct: 469 ANALMNMYRRCGSLMEA--------------------------------QNVFEGTQARD 496
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W SM+ G + E A +LF++M +E + PD SVLS C + L+ G+ +H
Sbjct: 497 VISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHG 556
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I ++ + D + ALI+MY +CGSL++A F+ +DV++WT MI G A+ G +
Sbjct: 557 RITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMK 616
Query: 302 ALRVFYQMERKGIKPNE-ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ +F+QM+ +G +P + +TF S+L+AC H+GL+ EG Q+F M Y V PTIEH+ CL
Sbjct: 617 AIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCL 676
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
V LL RA +AE I MP ++ LL AC + L + ANN +KL ++
Sbjct: 677 VGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNP 736
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+LLSN YA G W +VA+ RR M+ RK+PG S I++
Sbjct: 737 AVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEV 778
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 113/414 (27%), Positives = 197/414 (47%), Gaps = 40/414 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+ + K D V NSL+ YG+ AR +F + RDV S+NT++ +Y
Sbjct: 147 GKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQ 206
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L LF Q+ EGI DK+T + L A L GK +H + GL + +
Sbjct: 207 KAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRV 266
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ M +C + VD A++ F I D+D
Sbjct: 267 GTALVTMCVRCGD--------------------------------VDSAKQAFKGIADRD 294
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V++ +++ + EA E + +M +GV + +S+L+ACS+ L+ G+L+H
Sbjct: 295 VVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHS 354
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I ++ + D + ALI MY++CG L +A FY +D+++W +I G A E
Sbjct: 355 HISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGE 414
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMGGVYRVQPTIEHFV 358
A+R++ QM+ +G+KP TF+ +L+AC +S +G + R G ++
Sbjct: 415 AMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSG----IKSNGHLAN 470
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
L+++ R G L +A+ + A D IS+ ++++ + ++ K+ M
Sbjct: 471 ALMNMYRRCGSLMEAQNVFEGTQARD-VISWNSMIAGHAQHGSYETAYKLFQEM 523
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 189/393 (48%), Gaps = 34/393 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HA + + + DI++ N LI+ Y + DA +F +MP RDV SWN+L+S Y
Sbjct: 47 KRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQ 106
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ LF+++ G + +KIT + + +AC +L GK +H K G + ++
Sbjct: 107 GFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQ 166
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N+LL MY KC ++ A ++F + S R++VS N ++ Y V
Sbjct: 167 NSLLSMYGKCGDLPRARQVFAGI-SPRDVVSYNTMLGLYAQKAYV--------------- 210
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
+E L LF +M EG++PD+ +++L A ++ S L G+ +H+
Sbjct: 211 ----------------KECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKL 254
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
++ + D V TAL+ M +CG ++ A F +DVV + +I LA +G EA
Sbjct: 255 TVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEA 314
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
+Y+M G+ N T++S+L AC S + G +L ++ L+
Sbjct: 315 FEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALIS 373
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ +R G L +A E MP D IS+ A+++
Sbjct: 374 MYARCGDLPKARELFYTMPKRD-LISWNAIIAG 405
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 152/313 (48%), Gaps = 34/313 (10%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D+ T V L C R L K +H + G+ + + N L+ MY KC+ + +A ++F
Sbjct: 26 DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
EM RR+++S N LI+ Y A++ F ++A
Sbjct: 86 KEM-PRRDVISWNSLISCY--------AQQGFK-----------------------KKAF 113
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
+LF++M + G P++ +S+L+AC S + L+ G+ +H I++ +D V+ +L+ MY
Sbjct: 114 QLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMY 173
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
KCG L A F +DVV++ TM+ A E L +F QM +GI P++ T++
Sbjct: 174 GKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYI 233
Query: 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382
++L A ++ EG + ++ + I LV + R G + A++ K + A
Sbjct: 234 NLLDAFTTPSMLDEG-KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGI-A 291
Query: 383 EDKFISYKALLSA 395
+ + Y AL++A
Sbjct: 292 DRDVVVYNALIAA 304
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 12/152 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H +T++ L D+ +GN+LI+ Y R DAR +F + RDV SW ++
Sbjct: 550 LGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCA 609
Query: 61 DFSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYA------TKV 113
D + + + LF Q+ EG D T + SAC H G + Y ++
Sbjct: 610 DQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACN-----HAGLVLEGYQIFSSMESEY 664
Query: 114 GLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
G+ + L+ + + + EA L ++M
Sbjct: 665 GVLPTIEHYGCLVGLLGRARRFQEAETLINQM 696
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 168/462 (36%), Positives = 253/462 (54%), Gaps = 9/462 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ GLH H V + Y DAR LFD++P D+ S+ +LMS++
Sbjct: 38 IAHGLHPHQQS--------VSCKIFRCYADFGRVADARKLFDEIPNPDLISFTSLMSLHL 89
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E + LF +++ G D +V SA + G+ VH ++GL+ +
Sbjct: 90 QLDNQREAISLFARVVAAGHRPDGFAVVGALSASSGAGDQVVGRAVHGLIFRLGLDGEVV 149
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MY++C + + A+++FD M S ++ V+ +++GYI VD A FD++ +
Sbjct: 150 VGNALIDMYSQCGKFESAVKVFDRM-SLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVR 208
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V W +++ G V+ +QP ALELF +M+ EG P +V VLSAC+ + L GR++H
Sbjct: 209 SVVAWTALITGHVQGRQPVRALELFGRMVLEGHRPTHVTIVGVLSACADIGALDLGRVIH 268
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + N + + V AL+DMY+K G +E A F + KD TWTTMI G G
Sbjct: 269 GYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGK 328
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL +F M R G+ PN TFVSVL+AC HSGLI EG +LF RM +Y++ P +EH+ C+
Sbjct: 329 KALELFQDMLRAGVVPNSVTFVSVLSACSHSGLIEEGIELFDRMRQLYKIDPLLEHYGCM 388
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLL R GLL +AE I M E + +++LLSAC+ L + ++K
Sbjct: 389 IDLLGRGGLLEEAEALIADMNVEPDIVIWRSLLSACLVRGNNRLAEIAGKEIVKREPGDD 448
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL N YA W E E R+ M L+ KKPG S I++
Sbjct: 449 GVYVLLWNMYASSNKWREAREMRQQMLSLKIFKKPGCSWIEI 490
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 161/458 (35%), Positives = 261/458 (56%), Gaps = 1/458 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA K + V N+++ Y L AR +FD + R + SWN++++ Y+
Sbjct: 159 VHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGF 218
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E ++LF++++ G+ AD TLV L SA ++ L G+ VH Y G+E + NA
Sbjct: 219 CDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNA 278
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MYAKC + A +FD+M +++VS ++N Y + LV+ A ++F+ + K++V
Sbjct: 279 LIDMYAKCGHLQFAKHVFDQM-LDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVS 337
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W S++ V+ Q EA+ELF +M GV PD+ +VS+LS CS+ +L G+ H +I
Sbjct: 338 WNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYIC 397
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
N IT + +LIDMY+KCG+L+ A+ F+ K+VV+W +I LA +G G EA+
Sbjct: 398 DNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIE 457
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+F M+ G+ P+E TF +L+AC HSGL+ G F M +R+ P +EH+ C+VDLL
Sbjct: 458 MFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLL 517
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
R G L +A I+ MP + + + ALL AC Y ++ K++ +++LG + YV
Sbjct: 518 GRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYV 577
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
LLSN Y+ W ++ + R+ M + +K S I++
Sbjct: 578 LLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFIEI 615
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 120/425 (28%), Positives = 196/425 (46%), Gaps = 67/425 (15%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HA + L + + L+ + A +LFD++P + +N L+ Y++
Sbjct: 56 KLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNS 115
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+D + L+LF+Q++ G + ++ T + ACA VH A K+G+ ++
Sbjct: 116 NDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQ 175
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
NA+L Y C+ + A ++FD++ S R IVS N +I GY M D
Sbjct: 176 NAILTAYVACRLILSARQVFDDI-SDRTIVSWNSMIAGYSKMGFCD-------------- 220
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
EA+ LF++M+ GV D +VS+LSA S NL GR VH +
Sbjct: 221 -----------------EAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLY 263
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
I+ + D+ V ALIDMY+KCG L+ A F + KDVV+WT+M+ AN GL A
Sbjct: 264 IVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENA 323
Query: 303 LRVFYQMERK-------------------------------GIKPNEATFVSVLAACRHS 331
+++F M K G+ P++AT VS+L+ C ++
Sbjct: 324 VQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNT 383
Query: 332 GLITEGCQLFRRM-GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
G + G Q + + V T+ + L+D+ ++ G L A + MP E +S+
Sbjct: 384 GDLALGKQAHCYICDNIITVSVTLCN--SLIDMYAKCGALQTAIDIFFGMP-EKNVVSWN 440
Query: 391 ALLSA 395
++ A
Sbjct: 441 VIIGA 445
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 144/349 (41%), Gaps = 71/349 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H ++ T ++ D V N+LI Y + A+ +FD+M +DV SW +++ N
Sbjct: 256 LGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMV---N 312
Query: 61 DFSDSG----------------------------------EVLILFKQLIFEGIVADKIT 86
+++ G E + LF ++ G++ D T
Sbjct: 313 AYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDAT 372
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
LV + S C+ L GK HCY + + + N+L+ MYAKC + A+ +F M
Sbjct: 373 LVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGM- 431
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
+N+VS N++I LA F EEA+E+FK
Sbjct: 432 PEKNVVSWNVIIGA--------LALHGFG-----------------------EEAIEMFK 460
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKC 265
M G+ PDE +LSACS + GR ++ I+ ++D+ +
Sbjct: 461 SMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRG 520
Query: 266 GSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
G L EA+ K K DVV W ++ YG A ++ Q+ G
Sbjct: 521 GFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELG 569
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 140/305 (45%), Gaps = 13/305 (4%)
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
G +V+L L++ + + A +FD+I + ++ ++ G + P ++L LF
Sbjct: 66 GLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLF 125
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
++M+ G P++ VL AC++ +VH ++ + A V+ A++ Y C
Sbjct: 126 RQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVAC 185
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
+ A F + +V+W +MI G + G +EA+ +F +M + G++ + T VS+L
Sbjct: 186 RLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLL 245
Query: 326 -AACRHSGL-ITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMP 381
A+ +H L + L+ + GV I+ V L+D+ ++ G L A+ M
Sbjct: 246 SASSKHCNLDLGRFVHLYIVITGV-----EIDSIVTNALIDMYAKCGHLQFAKHVFDQML 300
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
+D +S+ ++++A + ++ N+M S + + EG +TE E
Sbjct: 301 DKD-VVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICC---LVQEGQYTEAVE 356
Query: 442 ARRNM 446
M
Sbjct: 357 LFHRM 361
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
+P + + +L CSS+ L +LVH I+ + + L+ + + G L A +
Sbjct: 36 SPTHQTLHHLLDQCSSMKRL---KLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHL 92
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
F + + + +I G +N ++L +F QM G PN+ TF VL AC
Sbjct: 93 LFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKAC 147
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 167/474 (35%), Positives = 262/474 (55%), Gaps = 10/474 (2%)
Query: 1 MGKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
M KG+ H + K+ SD+Y+G++L+ Y + DA+ +FD+M R+V SWN+L++
Sbjct: 168 MNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITC 227
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEY 117
+ + E L +F+ ++ + D++TL + SACA L + G+ VH K L
Sbjct: 228 FEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRN 287
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + NA + MYAKC + EA +FD M RN+++ +I+GY AR +F ++
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSM-PIRNVIAETSMISGYAMAASTKAARLMFTKM 346
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
++++V W +++ G + + EEAL LF + E V P ++L AC+ L+ L G
Sbjct: 347 AERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGM 406
Query: 238 ------LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L H F Q+ D FV +LIDMY KCG +EE + F K +D V+W MI
Sbjct: 407 QAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMII 466
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
G A G GNEAL +F +M G KP+ T + VL+AC H+G + EG F M + V
Sbjct: 467 GFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVA 526
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
P +H+ C+VDLL RAG L +A+ I+ MP + + + +LL+AC + LGK VA
Sbjct: 527 PLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEK 586
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
++++ + YVLLSN YA G W +V R++M++ K+PG S I ++ +
Sbjct: 587 LLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGH 640
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/388 (27%), Positives = 176/388 (45%), Gaps = 97/388 (25%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS-----IY 59
+HA V K+ ++I++ N LI Y + D R +FDKMP R++ +WN++++ +
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 60 NDFSDS--------------------------GEVLILFKQLIFEGIVADKITLVILFSA 93
D +DS E L F + EG V ++ + + SA
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
C+ L ++ G VH K + + +AL+ MY+KC +++A R+FDEMG RN+VS
Sbjct: 162 CSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGD-RNVVS 220
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE-EALELFKKMIDEG 212
N LI C + P EAL++F+ M++
Sbjct: 221 WNSLIT--------------------------------CFEQNGPAVEALDVFQMMLESR 248
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN-ITQDAFVKTALIDMYSKCGSLEE- 270
V PDE + SV+SAC+SLS ++ G+ VH +++N+ + D + A +DMY+KC ++E
Sbjct: 249 VEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEA 308
Query: 271 ------------------------------ALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
A + F K ++VV+W +I G G
Sbjct: 309 RFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENE 368
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAAC 328
EAL +F ++R+ + P +F ++L AC
Sbjct: 369 EALSLFCLLKRESVCPTHYSFANILKAC 396
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 154/299 (51%), Gaps = 6/299 (2%)
Query: 102 YGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY 161
Y + VH K G + ++N L+ Y+KC +++ ++FD+M +RNI + N ++ G
Sbjct: 38 YVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKM-PQRNIYTWNSVVTGL 96
Query: 162 IDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMV 221
+ +D A +F + ++D W SM+ G + + EEAL F M EG +E
Sbjct: 97 TKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFA 156
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK 281
SVLSACS L+++ G VH I ++ D ++ +AL+DMYSKCG++ +A F + +
Sbjct: 157 SVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDR 216
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
+VV+W ++I G EAL VF M ++P+E T SV++AC I G ++
Sbjct: 217 NVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVH 276
Query: 342 RRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP-----AEDKFISYKALLSA 395
R+ +++ I VD+ ++ + +A MP AE IS A+ ++
Sbjct: 277 GRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAAS 335
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 155/457 (33%), Positives = 265/457 (57%), Gaps = 1/457 (0%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
H + LD D + + I + + +F D+ +NT++ ++ +
Sbjct: 61 HCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELA 120
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
E ++L+ +++ + D +L + A RL +H G+ +HC A GL +++ AL
Sbjct: 121 TEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTAL 180
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+ MY+ C + EA +LFD + R++ N ++ GY + VD AR +F+ + +++++ W
Sbjct: 181 IQMYSSCGCVSEARQLFDGV-CFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISW 239
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+++ G + +P EA+ +F++M E V PDE M++ LSAC+ L L+ G +H +I +
Sbjct: 240 TAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDK 299
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
+ +++ + ALIDMY+KCG +E+AL F + K V+TWT+MI+GLA +GLG EAL +
Sbjct: 300 HGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEM 359
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F MER IKPNE TFV++L+AC H GL+ G F+ MG Y ++P I+H+ C++DLL
Sbjct: 360 FSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLG 419
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
RAG L +A+E ++ MP E + +LL+A + + +LGK+ +++K+ + Y L
Sbjct: 420 RAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTL 479
Query: 426 LSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
LSN YA + W E R+ M++ +K PG S I++
Sbjct: 480 LSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEV 516
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 149/347 (42%), Gaps = 70/347 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H T L SDI+V +LI Y ++AR LFD + FRDV WN +++ Y
Sbjct: 157 VGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYA 216
Query: 61 DFSD-------------------------------SGEVLILFKQLIFEGIVADKITLVI 89
D E + +F+++ E + D+I ++
Sbjct: 217 KVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLA 276
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
SACA L L G+ +H Y K GL ++ + NAL+ MYAKC ++++AL
Sbjct: 277 ALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKAL---------- 326
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
EVF + K ++ W SM+ G EALE+F M
Sbjct: 327 ----------------------EVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCME 364
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI-LQNNITQDAFVKTALIDMYSKCGSL 268
+ P+E V++LSAC + ++ GR + + + I +ID+ + G L
Sbjct: 365 RNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFL 424
Query: 269 EEA--LVTFYKTDCKDVVTWTTMIEGLANYG---LGNEALRVFYQME 310
+EA LV + + W +++ +G LG +AL+ ++E
Sbjct: 425 QEAQELVRGMPFE-ANAPIWGSLLAAARIHGDAELGKQALQHLIKVE 470
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 155/457 (33%), Positives = 265/457 (57%), Gaps = 1/457 (0%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
H + LD D + + I + + +F D+ +NT++ ++ +
Sbjct: 61 HCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELA 120
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
E ++L+ +++ + D +L + A RL +H G+ +HC A GL +++ AL
Sbjct: 121 TEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTAL 180
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+ MY+ C + EA +LFD + R++ N ++ GY + VD AR +F+ + +++++ W
Sbjct: 181 IQMYSSCGCVSEARQLFDGV-CFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISW 239
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+++ G + +P EA+ +F++M E V PDE M++ LSAC+ L L+ G +H +I +
Sbjct: 240 TAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDK 299
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
+ +++ + ALIDMY+KCG +E+AL F + K V+TWT+MI+GLA +GLG EAL +
Sbjct: 300 HGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEM 359
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F MER IKPNE TFV++L+AC H GL+ G F+ MG Y ++P I+H+ C++DLL
Sbjct: 360 FSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLG 419
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
RAG L +A+E ++ MP E + +LL+A + + +LGK+ +++K+ + Y L
Sbjct: 420 RAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTL 479
Query: 426 LSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
LSN YA + W E R+ M++ +K PG S I++
Sbjct: 480 LSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEV 516
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 149/347 (42%), Gaps = 70/347 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H T L SDI+V +LI Y ++AR LFD + FRDV WN +++ Y
Sbjct: 157 VGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYA 216
Query: 61 DFSD-------------------------------SGEVLILFKQLIFEGIVADKITLVI 89
D E + +F+++ E + D+I ++
Sbjct: 217 KVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLA 276
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
SACA L L G+ +H Y K GL ++ + NAL+ MYAKC ++++AL
Sbjct: 277 ALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKAL---------- 326
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
EVF + K ++ W SM+ G EALE+F M
Sbjct: 327 ----------------------EVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCME 364
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI-LQNNITQDAFVKTALIDMYSKCGSL 268
+ P+E V++LSAC + ++ GR + + + I +ID+ + G L
Sbjct: 365 RNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFL 424
Query: 269 EEA--LVTFYKTDCKDVVTWTTMIEGLANYG---LGNEALRVFYQME 310
+EA LV + + W +++ +G LG +AL+ ++E
Sbjct: 425 QEAQELVRGMPFEANAPI-WGSLLAAARIHGDAELGKQALQHLIKVE 470
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 269/465 (57%), Gaps = 4/465 (0%)
Query: 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +H K + + VGN+L+HFY DA +FD+MP RDV SW TL+ Y
Sbjct: 161 GEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYA 220
Query: 61 DFSDSGEVLILF-KQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ E LF + ++ G+ + +TLV SA ++ L +G +H Y T+ G+ +
Sbjct: 221 RAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSV 280
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N++NAL+ M+ KC + A +FD M +++ S ++N Y ++ A ++F ++
Sbjct: 281 NLDNALVDMFGKCGCVRYAREVFDGM-EVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPR 339
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+++V W M+ + QPEEA+ LF++MI GV P + +VSVLSAC+ L L GR +
Sbjct: 340 RNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWI 399
Query: 240 HR-FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+ +I+ N I + ALIDM++KCG + EA F + ++VV+W TMI A +G
Sbjct: 400 YENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQ 459
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EA+R+F Q++ + I P++ TF+ +LA+C HSGL++EG + F+ M YR++P +EH+
Sbjct: 460 SEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYA 519
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C++DLL + GLL +A E + MP E + ALL+AC + ++G VA+ +++L
Sbjct: 520 CMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPS 579
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVL+S YA + W +V R M++ +K PG S I+++
Sbjct: 580 DSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVE 624
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 123/238 (51%), Gaps = 14/238 (5%)
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY------GRLVH 240
+MM G ++A+ P AL LF++++ + + D V + A ++ + ++ G +H
Sbjct: 106 TMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIH 165
Query: 241 RFILQNN-ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
L+ + + V AL+ Y+ SL++A F + +DVV+WTT+++G A GL
Sbjct: 166 CAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLA 225
Query: 300 NEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM--GGVYRVQPTIEH 356
+EA R+F +M G++PN T V+ ++A GL+ G L + + GGV R ++
Sbjct: 226 DEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVAR---SVNL 282
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
LVD+ + G + A E M +D + S+ ++++A + + +++ +M +
Sbjct: 283 DNALVDMFGKCGCVRYAREVFDGMEVKDVY-SWTSMVNAYAKCGDLESAEQLFKDMPR 339
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 171/504 (33%), Positives = 272/504 (53%), Gaps = 44/504 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY--- 59
+ +H HV + +++VGN L+ YG++ DAR +F++M R SWNT++S Y
Sbjct: 993 RSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALN 1052
Query: 60 -----------------------------NDFSDSG---EVLILFKQLIFEGIVADKITL 87
+ + G E + LF ++ GI A L
Sbjct: 1053 YDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEAL 1112
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
++ S L GK +H Y K G E L ++N+L+ +Y K ++ A LF E+ +
Sbjct: 1113 AVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKT 1172
Query: 148 RRNIVSLNILINGYIDMELVDLAREVF------DE--IVDKDIVLWRSMMHGCVKAKQPE 199
+ NIVS N LI+ Y D+ D A +F DE +V ++V W +++ G Q E
Sbjct: 1173 K-NIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGE 1231
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
EALELF++M V + + SVLS C+ L+ L GR +H ++++ + + V LI
Sbjct: 1232 EALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLI 1291
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
+MY+K GS +E + F K + KD+++W TM+ G +GLG A+R F QM + G +P+
Sbjct: 1292 NMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGV 1351
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
TFV+VL+AC H+GL+ EG +LF +M +RV+P +EH+ C+VDLL RAGLL +A + +K
Sbjct: 1352 TFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKS 1411
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
MP E + ALL++C + ++ ++ A+ + L ++ +Y+LLSN YA G W +
Sbjct: 1412 MPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDS 1471
Query: 440 AEARRNMKELQTRKKPGNSIIDLK 463
A+ R + K +K PG S I +K
Sbjct: 1472 AKVRISAKTKGLKKTPGQSWIQVK 1495
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 179/355 (50%), Gaps = 12/355 (3%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMS 57
+ + +H+ + T ++ ++ Y L +DA+ +F+ P F ++ WN+++
Sbjct: 887 LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILR 946
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
E L ++ ++ G+ AD T ++ ACA + ++VH + ++G ++
Sbjct: 947 ANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW 1006
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L++ N L+ MY K MD+A ++F+ M + R+ VS N +++GY A E+F +
Sbjct: 1007 NLHVGNELMGMYGKIGRMDDARKVFERM-AVRSCVSWNTMVSGYALNYDCHGASEMFRMM 1065
Query: 178 ----VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
++ ++V W S++ + Q E +ELF +M G+ E + VLS L+
Sbjct: 1066 GSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAF 1125
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
G+++H ++++ FVK +LI +Y K G++ A + F + K++V+W +I
Sbjct: 1126 DEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSY 1185
Query: 294 ANYGLGNEALRVFYQMERKG----IKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
A+ G +EA +F Q+E+ ++PN ++ +V+ G E +LFRRM
Sbjct: 1186 ADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 1240
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 56/95 (58%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H HV ++ +D +I VGN LI+ Y + F + ++F+K+ +D+ SWNT+++ Y
Sbjct: 1267 LGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYG 1326
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
+ F Q+I +G D +T V + SAC+
Sbjct: 1327 IHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACS 1361
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 171/504 (33%), Positives = 272/504 (53%), Gaps = 44/504 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY--- 59
+ +H HV + +++VGN L+ YG++ DAR +F++M R SWNT++S Y
Sbjct: 155 RSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALN 214
Query: 60 -----------------------------NDFSDSG---EVLILFKQLIFEGIVADKITL 87
+ + G E + LF ++ GI A L
Sbjct: 215 YDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEAL 274
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
++ S L GK +H Y K G E L ++N+L+ +Y K ++ A LF E+ +
Sbjct: 275 AVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKT 334
Query: 148 RRNIVSLNILINGYIDMELVDLAREVF------DE--IVDKDIVLWRSMMHGCVKAKQPE 199
+ NIVS N LI+ Y D+ D A +F DE +V ++V W +++ G Q E
Sbjct: 335 K-NIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGE 393
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
EALELF++M V + + SVLS C+ L+ L GR +H ++++ + + V LI
Sbjct: 394 EALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLI 453
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
+MY+K GS +E + F K + KD+++W TM+ G +GLG A+R F QM + G +P+
Sbjct: 454 NMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGV 513
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
TFV+VL+AC H+GL+ EG +LF +M +RV+P +EH+ C+VDLL RAGLL +A + +K
Sbjct: 514 TFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKS 573
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
MP E + ALL++C + ++ ++ A+ + L ++ +Y+LLSN YA G W +
Sbjct: 574 MPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDS 633
Query: 440 AEARRNMKELQTRKKPGNSIIDLK 463
A+ R + K +K PG S I +K
Sbjct: 634 AKVRISAKTKGLKKTPGQSWIQVK 657
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 179/355 (50%), Gaps = 12/355 (3%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMS 57
+ + +H+ + T ++ ++ Y L +DA+ +F+ P F ++ WN+++
Sbjct: 49 LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILR 108
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
E L ++ ++ G+ AD T ++ ACA + ++VH + ++G ++
Sbjct: 109 ANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW 168
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L++ N L+ MY K MD+A ++F+ M + R+ VS N +++GY A E+F +
Sbjct: 169 NLHVGNELMGMYGKIGRMDDARKVFERM-AVRSCVSWNTMVSGYALNYDCHGASEMFRMM 227
Query: 178 ----VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
++ ++V W S++ + Q E +ELF +M G+ E + VLS L+
Sbjct: 228 GSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAF 287
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
G+++H ++++ FVK +LI +Y K G++ A + F + K++V+W +I
Sbjct: 288 DEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSY 347
Query: 294 ANYGLGNEALRVFYQMERKG----IKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
A+ G +EA +F Q+E+ ++PN ++ +V+ G E +LFRRM
Sbjct: 348 ADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 56/95 (58%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H HV ++ +D +I VGN LI+ Y + F + ++F+K+ +D+ SWNT+++ Y
Sbjct: 429 LGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYG 488
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
+ F Q+I +G D +T V + SAC+
Sbjct: 489 IHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACS 523
>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 997
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 170/464 (36%), Positives = 248/464 (53%), Gaps = 33/464 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H H KT +D +V +LI Y R +A VLF + F D+ +WN +MS Y
Sbjct: 442 LSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRNNF-DLVAWNAMMSGYT 500
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D + L LF + +G +D TL + C L ++ GK VH YA K G + L
Sbjct: 501 QSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLW 560
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ + +L MY KC +M A + FD I
Sbjct: 561 VSSGILDMYVKCGDMSAA--------------------------------QFAFDSIPVP 588
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V W +++ GC++ + E AL +F +M GV PDE + ++ A S L+ L+ GR +H
Sbjct: 589 DDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIH 648
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
L+ N T D FV T+L+DMY+KCGS+++A F + + ++ W M+ GLA +G G
Sbjct: 649 ANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGK 708
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL++F QME GIKP++ TF+ VL+AC HSGL++E + R M Y ++P IEH+ CL
Sbjct: 709 EALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCL 768
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
D L RAGL+ +AE I M E Y+ LL+AC + + GK+VA +++L
Sbjct: 769 ADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDS 828
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
AYVLLSN YA W E+ AR MK + +K PG S I++K+
Sbjct: 829 SAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKN 872
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 165/371 (44%), Gaps = 39/371 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H K LD + V NSLI+ Y ++ AR +F+ M RD+ SWN++++
Sbjct: 340 LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIA 399
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL-EKLHYGKTVHCYATKVGLEYML 119
E + LF QL+ G+ D T+ + A + L E L K +H +A K
Sbjct: 400 QSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADS 459
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ AL+ Y++ + M EA LF R N
Sbjct: 460 FVSTALIDAYSRNRCMKEAEVLF----GRNNF---------------------------- 487
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W +MM G ++ + LELF M +G D+ + +VL C L + G+ V
Sbjct: 488 -DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQV 546
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + +++ D +V + ++DMY KCG + A F D V WTT+I G G
Sbjct: 547 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEE 606
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV- 358
AL VF QM G+ P+E T ++ A + +G Q+ ++ T + FV
Sbjct: 607 ERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIH---ANALKLNCTSDPFVG 663
Query: 359 -CLVDLLSRAG 368
LVD+ ++ G
Sbjct: 664 TSLVDMYAKCG 674
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/420 (25%), Positives = 191/420 (45%), Gaps = 50/420 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK HA + + + ++ N+LI Y + T AR +FDKMP RD+ SWN++++ Y
Sbjct: 64 LGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYA 123
Query: 61 DFSDS-----GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
S+ E +LF+ L + + ++TL + C + ++ H YA K+GL
Sbjct: 124 QSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGL 183
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM----ELVDLAR 171
+ + AL+ +Y K ++ E LF+EM R++V N+++ Y++M E +DL+
Sbjct: 184 DGDDFVAGALVNIYLKFGKVKEGRVLFEEM-PYRDVVLWNLMLKAYLEMGFKEEAIDLSS 242
Query: 172 EVF----------------------------------DEIVDKDIVLWRSMMHGCVKAKQ 197
D +I+ ++ G + A Q
Sbjct: 243 AFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQ 302
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
L+ F M++ + D+ + VL+ L +L G+ VH L+ + V +
Sbjct: 303 YSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNS 362
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LI+MY K + A F +D+++W ++I G+A L EA+ +F Q+ R G+KP+
Sbjct: 363 LINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPD 422
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMG-GVYRVQPTIEHFV--CLVDLLSRAGLLYQAE 374
T SVL A + + EG L +++ + + FV L+D SR + +AE
Sbjct: 423 HYTMTSVLKA---ASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAE 479
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
S S+L G+ H IL + F+ LI MYSKCGSL A F K +D+V+W +
Sbjct: 58 STSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNS 117
Query: 289 MIEGLANYGLG-----NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
++ A G EA +F + + + + T +L C HSG +
Sbjct: 118 ILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 168
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 171/504 (33%), Positives = 272/504 (53%), Gaps = 44/504 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY--- 59
+ +H HV + +++VGN L+ YG++ DAR +F++M R SWNT++S Y
Sbjct: 155 RSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALN 214
Query: 60 -----------------------------NDFSDSG---EVLILFKQLIFEGIVADKITL 87
+ + G E + LF ++ GI A L
Sbjct: 215 YDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEAL 274
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
++ S L GK +H Y K G E L ++N+L+ +Y K ++ A LF E+ +
Sbjct: 275 AVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKT 334
Query: 148 RRNIVSLNILINGYIDMELVDLAREVF------DE--IVDKDIVLWRSMMHGCVKAKQPE 199
+ NIVS N LI+ Y D+ D A +F DE +V ++V W +++ G Q E
Sbjct: 335 K-NIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGE 393
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
EALELF++M V + + SVLS C+ L+ L GR +H ++++ + + V LI
Sbjct: 394 EALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLI 453
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
+MY+K GS +E + F K + KD+++W TM+ G +GLG A+R F QM + G +P+
Sbjct: 454 NMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGV 513
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
TFV+VL+AC H+GL+ EG +LF +M +RV+P +EH+ C+VDLL RAGLL +A + +K
Sbjct: 514 TFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKS 573
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
MP E + ALL++C + ++ ++ A+ + L ++ +Y+LLSN YA G W +
Sbjct: 574 MPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDS 633
Query: 440 AEARRNMKELQTRKKPGNSIIDLK 463
A+ R + K +K PG S I +K
Sbjct: 634 AKVRISAKTKGLKKTPGQSWIQVK 657
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 179/355 (50%), Gaps = 12/355 (3%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMS 57
+ + +H+ + T ++ ++ Y L +DA+ +F+ P F ++ WN+++
Sbjct: 49 LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILR 108
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
E L ++ ++ G+ AD T ++ ACA + ++VH + ++G ++
Sbjct: 109 ANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW 168
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L++ N L+ MY K MD+A ++F+ M + R+ VS N +++GY A E+F +
Sbjct: 169 NLHVGNELMGMYGKIGRMDDARKVFERM-AVRSCVSWNTMVSGYALNYDCHGASEMFRMM 227
Query: 178 ----VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
++ ++V W S++ + Q E +ELF +M G+ E + VLS L+
Sbjct: 228 GSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAF 287
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
G+++H ++++ FVK +LI +Y K G++ A + F + K++V+W +I
Sbjct: 288 DEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSY 347
Query: 294 ANYGLGNEALRVFYQMERKG----IKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
A+ G +EA +F Q+E+ ++PN ++ +V+ G E +LFRRM
Sbjct: 348 ADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 56/95 (58%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H HV ++ +D +I VGN LI+ Y + F + ++F+K+ +D+ SWNT+++ Y
Sbjct: 429 LGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYG 488
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
+ F Q+I +G D +T V + SAC+
Sbjct: 489 IHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACS 523
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 159/465 (34%), Positives = 263/465 (56%), Gaps = 5/465 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA + D+D+ V +LI+ YG+ +AR +FDKM RD+ SWN ++ Y
Sbjct: 226 GRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVL 285
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D E L L+++L EG K T V + AC+ ++ L G+ VH + + GL+ + +
Sbjct: 286 NGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAV 345
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM---ELVDLAREVFDEIV 178
AL+ MYAKC ++EA ++F+ M R+ V+ + LI Y + AR+VFD +
Sbjct: 346 ATALVNMYAKCGSLEEARKVFNAM-KNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLG 404
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGR 237
+D + W +M+ V+ A+++F++M G+ PD ++VL AC+SL L +
Sbjct: 405 SRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVK 464
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H I ++ + + V LI+MY++CGSLEEA F K VV+WT M+ + YG
Sbjct: 465 ALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYG 524
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F +M+ +G+KP++ T+ S+L C H G + +G + F M ++ + PT +HF
Sbjct: 525 RYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHF 584
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
+VDLL R+G L+ A+E ++ MP E +++ L+AC + + +LG+ A + +L
Sbjct: 585 AAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDP 644
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
S Y+ +SN YA G W +VA R+ M+E +K PG S I++
Sbjct: 645 SSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEV 689
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/436 (27%), Positives = 200/436 (45%), Gaps = 70/436 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V + LDS + N+L+ Y R DA+ +F + RD SWN ++ ++
Sbjct: 126 GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQ 185
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D L +FK++ + + + T + + S + E L G+ +H G + L +
Sbjct: 186 SGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVV 244
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MY KC EA +FD+M +R++VS N++I Y +++ D
Sbjct: 245 ATALINMYGKCGSSHEAREVFDKM-KKRDMVSWNVMIGCY---------------VLNGD 288
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
EALEL++K+ EG + VS+L ACSS+ L GRLVH
Sbjct: 289 F----------------HEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHS 332
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
IL+ + + V TAL++MY+KCGSLEEA F +D V W+T+I A+ G G +
Sbjct: 333 HILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKD 392
Query: 302 ----------------------------------ALRVFYQME-RKGIKPNEATFVSVLA 326
A+++F +M G+KP+ TF++VL
Sbjct: 393 ARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLE 452
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC G ++E L ++ ++ + L+++ +R G L +AE E
Sbjct: 453 ACASLGRLSEVKALHAQI-SESELESNVVVTNTLINMYARCGSLEEAERLFA-AAKEKTV 510
Query: 387 ISYKALLSACITYSEF 402
+S+ A+++A Y +
Sbjct: 511 VSWTAMVAAFSQYGRY 526
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 116/439 (26%), Positives = 206/439 (46%), Gaps = 48/439 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR--DVGSWNTLMSIY 59
G+ LH + + + D VGN+LI YG+ DAR +F+ M +R +V SWN +++ Y
Sbjct: 26 GRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAY 85
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
S E L+L+ ++ +G+ D +T V + AC+ L + G+ +H GL+
Sbjct: 86 AQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLDSFQ 142
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ NAL+ MYA+ + +A R+F + +
Sbjct: 143 SLANALVTMYARFGSVGDAKRMFQSLQT-------------------------------- 170
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D W +++ ++ AL +FK+M + V P+ ++V+S S+ L GR +
Sbjct: 171 RDETSWNAVILAHSQSGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKI 229
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H I+ N D V TALI+MY KCGS EA F K +D+V+W MI G
Sbjct: 230 HAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDF 289
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV- 358
+EAL ++ +++ +G K +ATFVS+L AC + +G R+ + ++ ++ V
Sbjct: 290 HEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG-----RLVHSHILERGLDSEVA 344
Query: 359 ---CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
LV++ ++ G L +A + M D +++ L+ A + +K +L
Sbjct: 345 VATALVNMYAKCGSLEEARKVFNAMKNRDA-VAWSTLIGAYASNGYGKDARKARKVFDRL 403
Query: 416 GNQSHEAYVLLSNFYALEG 434
G++ ++ + Y G
Sbjct: 404 GSRDTISWNAMITTYVQNG 422
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 11/185 (5%)
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
PD ++VL +CSS ++ GR +H I + +D V ALI MY KC SL +A
Sbjct: 5 PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64
Query: 275 FYKTDC--KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F D ++VV+W MI A G EAL ++++M +G+ + TFVSVL AC
Sbjct: 65 FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS-- 122
Query: 333 LITEGCQLFRRM--GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+ +G ++ R+ G+ Q LV + +R G + A+ + + D+ S+
Sbjct: 123 -LAQGREIHNRVFYSGLDSFQSLAN---ALVTMYARFGSVGDAKRMFQSLQTRDE-TSWN 177
Query: 391 ALLSA 395
A++ A
Sbjct: 178 AVILA 182
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 167/470 (35%), Positives = 266/470 (56%), Gaps = 9/470 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG +HA V+K+ +D+Y+G++LI Y + A +F M R++ +WN+L++ Y
Sbjct: 165 MGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYE 224
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYML 119
+ E L +F +++ G+ D++TL + SACA L L G +H K L
Sbjct: 225 QNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDL 284
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NAL+ MYAKC +++EA R+FD M S RN+VS +++GY V AR +F ++
Sbjct: 285 VLGNALVDMYAKCSKVNEARRVFDRM-SIRNVVSETSMVSGYARAASVKAARFMFSKMTQ 343
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+++V W +++ G + + EEAL LF+ + E + P ++LSAC++L++L GR
Sbjct: 344 RNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQA 403
Query: 240 HRFIL------QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
H +L Q+ D FV +LIDMY KCGS+E+ F K +D V+W +I G
Sbjct: 404 HTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGY 463
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A G G EAL++F +M G KP+ T + VL AC H+GL+ EG F M + + P
Sbjct: 464 AQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPL 522
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
+H+ C+VDLL RAG L +A+ I+ MP + + +LL+AC + ++GK A ++
Sbjct: 523 KDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLL 582
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++ + YVLLSN YA G W +V R+ M++ K+PG S I+++
Sbjct: 583 EIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVE 632
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 168/388 (43%), Gaps = 97/388 (25%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY--NDF 62
+HA + T +I++ N LI YG+ DAR LFD+MP R+ +WN+L+S+ + F
Sbjct: 37 VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGF 96
Query: 63 SDSG-----------------------------EVLILFKQLIFEGIVADKITLVILFSA 93
D E L F ++ E + ++ + SA
Sbjct: 97 LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
CA L L+ G VH +K + M +AL+ MY+KC + A +F M RN+V+
Sbjct: 157 CAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGM-IERNLVT 215
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP-EEALELFKKMIDEG 212
N LI C + P EALE+F +M+D G
Sbjct: 216 WNSLIT--------------------------------CYEQNGPASEALEVFVRMMDSG 243
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
+ PDE + SV+SAC+SL L+ G +H R + N D + AL+DMY+KC + EA
Sbjct: 244 LEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEA 303
Query: 272 -----------------LVT--------------FYKTDCKDVVTWTTMIEGLANYGLGN 300
+V+ F K ++VV+W +I G G
Sbjct: 304 RRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENE 363
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAAC 328
EALR+F ++R+ I P TF ++L+AC
Sbjct: 364 EALRLFRLLKRESIWPTHYTFGNLLSAC 391
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 145/291 (49%), Gaps = 1/291 (0%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L +C R + VH + ++N L+ +Y KC +D+A +LFD M +R
Sbjct: 21 LLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRM-PQR 79
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N + N LI+ +D A +F + + D W SM+ G + + EE+LE F KM
Sbjct: 80 NTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMH 139
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
E +E S LSAC+ L +L G VH + ++ + D ++ +ALIDMYSKCGS+
Sbjct: 140 REDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVA 199
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
A F +++VTW ++I G +EAL VF +M G++P+E T SV++AC
Sbjct: 200 CAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACA 259
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
+ EG Q+ R+ + + + LVD+ ++ + +A M
Sbjct: 260 SLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 33/211 (15%)
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC--------- 265
P+ +L +C + + RLVH IL + + F++ LID+Y KC
Sbjct: 13 PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72
Query: 266 ----------------------GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
G L+EA F D +W +M+ G A + E+L
Sbjct: 73 FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
F +M R+ NE +F S L+AC + G Q+ + R + L+D+
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQV-HALVSKSRYSTDVYMGSALIDM 191
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
S+ G + AEE M E +++ +L++
Sbjct: 192 YSKCGSVACAEEVFSGM-IERNLVTWNSLIT 221
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 168/461 (36%), Positives = 250/461 (54%), Gaps = 32/461 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA + L+SD+ VG +L+ YG+ +AR +FD + D+ SW ++ Y
Sbjct: 148 GKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQ 207
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L Q+ EG + IT V + +ACA L + K VH +A GLE + +
Sbjct: 208 SGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRV 267
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYAK +D+A R VFD + +D
Sbjct: 268 GTALVQMYAKSGSIDDA--------------------------------RVVFDRMKVRD 295
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W M+ + + EA +LF +M EG PD + +S+L+AC+S L++ + +HR
Sbjct: 296 VVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHR 355
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
L + + D V TAL+ MYSK GS+++A V F + ++VV+W MI GLA +GLG +
Sbjct: 356 HALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQD 415
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL VF +M G+KP+ TFV+VL+AC H+GL+ EG + M VY ++P + H C+V
Sbjct: 416 ALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMV 475
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +A+ FI M + ++ ALL +C TY +LG+ VA +KL ++
Sbjct: 476 DLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAA 535
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA G W V+ R M+E RK+PG S I++
Sbjct: 536 TYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEV 576
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 196/394 (49%), Gaps = 34/394 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +H + K+ ++ + +V N+L+H Y +AR +FD + + SWN +++ Y +
Sbjct: 47 AKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVE 106
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + + LF+++ EG+ + T +I+ ACA L L +GK VH GLE + +
Sbjct: 107 HKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRV 166
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ALL MY KC ++EA R+FD + ++ D
Sbjct: 167 GTALLRMYGKCGSINEARRIFDNL--------------------------------MNHD 194
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
I+ W M+ ++ +EA L +M EG P+ VS+L+AC+S L++ + VHR
Sbjct: 195 IISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHR 254
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
L + D V TAL+ MY+K GS+++A V F + +DVV+W MI A +G G+E
Sbjct: 255 HALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHE 314
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A +F QM+ +G KP+ F+S+L AC +G + E + R ++ + LV
Sbjct: 315 AYDLFLQMQTEGCKPDAIMFLSILNACASAGAL-EWVKKIHRHALDSGLEVDVRVGTALV 373
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ S++G + A M + +S+ A++S
Sbjct: 374 HMYSKSGSIDDARVVFDRMKVRN-VVSWNAMISG 406
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 130/268 (48%), Gaps = 32/268 (11%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
E +++ + G++ D V + C + + L K VH K +E ++ N LL
Sbjct: 11 EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
+Y +C + EA R VFD +V K W
Sbjct: 71 HVYIECGRLQEA--------------------------------RCVFDALVKKSGASWN 98
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
+M+ G V+ K E+A+ LF++M EGV P+ + +L AC+SLS L++G+ VH I
Sbjct: 99 AMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHG 158
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ D V TAL+ MY KCGS+ EA F D+++WT MI A G G EA R+
Sbjct: 159 GLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLM 218
Query: 307 YQMERKGIKPNEATFVSVLAACRHSGLI 334
QME++G KPN T+VS+L AC G +
Sbjct: 219 LQMEQEGFKPNAITYVSILNACASEGAL 246
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 116/257 (45%), Gaps = 13/257 (5%)
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
A EA+ + + G+ D + V VL C +L + VH I+++ + Q+A V
Sbjct: 6 ANTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHV 65
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
L+ +Y +CG L+EA F K +W MI G + +A+R+F +M +G+
Sbjct: 66 MNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGV 125
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFR--RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
+PN T++ +L AC + G ++ R GG ++ + L+ + + G + +
Sbjct: 126 QPNAGTYMIILKACASLSALKWGKEVHACIRHGG---LESDVRVGTALLRMYGKCGSINE 182
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA----YVLLSN 428
A + D IS+ ++ A Y++ GK+ M+++ + + YV + N
Sbjct: 183 ARRIFDNLMNHD-IISWTVMIGA---YAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILN 238
Query: 429 FYALEGHWTEVAEARRN 445
A EG V R+
Sbjct: 239 ACASEGALKWVKRVHRH 255
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 164/498 (32%), Positives = 272/498 (54%), Gaps = 34/498 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+GK +H+ V K L + + V NSL++ Y + A+V+FD+M R+ SWN ++S++
Sbjct: 125 IGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHM 184
Query: 60 ------------------------------NDFSDSGEVLILFKQLIFE-GIVADKITLV 88
N E L F ++ + + D+ +L
Sbjct: 185 NCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLA 244
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG-S 147
SACA LEKL +GK +H Y + + + NAL+ MYAK ++ A R+ ++ G S
Sbjct: 245 SALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGIS 304
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
++++ L+NGY+ + + AR++F+ + D D+V W +M+ G V+ +A+E+FK
Sbjct: 305 DLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKT 364
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M+ EG P+ + ++LSA SS+++L +G+ +H +++ V AL MY+K GS
Sbjct: 365 MVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGS 424
Query: 268 LEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+ A F +D V+WT+MI LA +GLG EA+ +F QM GIKP+ T+V VL+
Sbjct: 425 INGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLS 484
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC H GL+ +G F M V+++ PT+ H+ C+VDL RAGLL +A +F++ MP E
Sbjct: 485 ACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDV 544
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
I++ +LLS+C Y DL K A ++ + + AY L+N Y+ G W + A+ R+ M
Sbjct: 545 IAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLM 604
Query: 447 KELQTRKKPGNSIIDLKH 464
K +K+ G S + +++
Sbjct: 605 KARGVKKEQGLSWVQIQN 622
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 120/441 (27%), Positives = 204/441 (46%), Gaps = 43/441 (9%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N+++ Y + A +FD +P RD SW T++ YN + + +F ++ + ++
Sbjct: 45 NTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVL 104
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
+ TL + ++CA GK VH + K+GL + + N+LL MYAK ++ A +
Sbjct: 105 PTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVV 164
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
FD M RN S N +I+ +++ VDLA F+ + ++DIV W SM+ GC + EA
Sbjct: 165 FDRM-KLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEA 223
Query: 202 LELFKKMI-DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
L+ F ++ D + PD + S LSAC++L L +G+ +H +I++ V ALI
Sbjct: 224 LQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALIS 283
Query: 261 MYSKCGSLE---------------------------------EALVTFYKTDCKDVVTWT 287
MY+K G +E A F DVV WT
Sbjct: 284 MYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWT 343
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RM 344
MI G GL N+A+ VF M +G +PN T ++L+A + G Q+ R
Sbjct: 344 AMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRS 403
Query: 345 GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDL 404
G + P++ + L + ++AG + A + ++ +S+ +++ A + +
Sbjct: 404 GEA--LSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEE 459
Query: 405 GKKVANNMMKLG-NQSHEAYV 424
++ M+ LG H YV
Sbjct: 460 AIELFEQMLTLGIKPDHITYV 480
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 164/336 (48%), Gaps = 39/336 (11%)
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K+GL + + + N L+ +YAK +A LF+EM + S N +++GY ++ A
Sbjct: 3 KLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEM-PVKTTFSWNTILSGYAKQGKLEKAH 61
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
+VFD I +D V W +++ G + + E+A+++F M+ + V P + + +VL++C++
Sbjct: 62 QVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATG 121
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK-------------- 277
+ G+ VH F+++ + V +L++MY+K G L+ A V F +
Sbjct: 122 SRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMIS 181
Query: 278 --TDC---------------KDVVTWTTMIEGLANYGLGNEALRVFYQ-MERKGIKPNEA 319
+C +D+V+W +MI G +G NEAL+ F ++ +KP+
Sbjct: 182 LHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRF 241
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFI 377
+ S L+AC + ++ G Q+ G + R V L+ + +++G + A I
Sbjct: 242 SLASALSACANLEKLSFGKQIH---GYIVRTMFDASGAVGNALISMYAKSGGVEIARRII 298
Query: 378 KIMPAED-KFISYKALLSACITYSEFDLGKKVANNM 412
+ D I++ ALL+ + + +++ N++
Sbjct: 299 EQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSL 334
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 164/463 (35%), Positives = 261/463 (56%), Gaps = 4/463 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMA---LFTDARVLFDKMPFRDVGSWNTLMSIY 59
K + H+T + D Y +I F + + A LF + R WNT++ +
Sbjct: 27 KQIQTHLTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLFLGLRHRSTFIWNTVIRAF 86
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ ++ + ++LFK +++ + + T LF AC L L+ G HC + K+G E+
Sbjct: 87 AEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACHCQSIKLGWEFYD 146
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++N L+ M+A MD A +LFD + S R++++ LINGY+ V + RE+FD++ +
Sbjct: 147 FVQNGLVHMFAIFGCMDSARKLFD-LSSNRDVITWTALINGYVRAGQVLIGRELFDKMPE 205
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
++ V W +M+ G V+ EEALELF M+ G P+ +V ++AC+SL L GR +
Sbjct: 206 RNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASLGALDQGRWI 265
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I +N + D + ALIDMY+KCG +E A F + +DV +T +I GLAN+G
Sbjct: 266 HCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANHGQS 325
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
A+ +F +M +G+ PNE TFVSVL AC GL+ +G ++F M +Y +P ++H+ C
Sbjct: 326 ATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQHYGC 385
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
LVDLL RAG L +A++ +K MP + ALL+A Y + +LG++ ++ +L
Sbjct: 386 LVDLLGRAGKLEEAKKLVKEMPMKPDSYVLGALLNASRVYGDVELGEETVESLAQLSLDH 445
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+V+LSN YA W EVA RR M + + RK PG S+I +
Sbjct: 446 SGVHVVLSNMYASANKWDEVARVRRGMGDKKVRKVPGCSLIKV 488
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 86/169 (50%), Gaps = 4/169 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H ++ + +D D +G +LI Y + A +F ++ RDV + L+S +
Sbjct: 262 GRWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLAN 321
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYMLN 120
S + LF+++ EG+V +++T V + +AC+R+ + G + +K+ G E +
Sbjct: 322 HGQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQ 381
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMEL 166
L+ + + +++EA +L EM + + L L+N Y D+EL
Sbjct: 382 HYGCLVDLLGRAGKLEEAKKLVKEMPMKPDSYVLGALLNASRVYGDVEL 430
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 165/444 (37%), Positives = 251/444 (56%), Gaps = 3/444 (0%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
+S++ + R + +AR +FD RD +W ++S + E L +F + EG
Sbjct: 207 SSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERNDLFVEALAVFSDMREEGWP 266
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
D+ +V + +ACA+ E + G+ H + GL +N++NAL+ MY+ C ++ A RL
Sbjct: 267 VDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHMYSSCLDVVAARRL 326
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
FD S + S N +I+GY+ V+ A+ +F+ + DKD V W +M+ GCV+ Q EA
Sbjct: 327 FDSSESLDHF-SWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEA 385
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L +F M + PDE +VSV+SAC++L L+ G+LVH +I Q + T+LIDM
Sbjct: 386 LTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQYQYNITIVLGTSLIDM 445
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK-PNEAT 320
Y KCG +E AL F + K W +I GLA GL +L +F +ME GI P+E T
Sbjct: 446 YMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMETSGIAVPSEIT 505
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
F VL+ACRH GL+ EG Q F+ M Y++ P I H+ C+VDLL RAG + +AE+ I+ M
Sbjct: 506 FTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHYGCMVDLLGRAGYVREAEDLIQSM 565
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440
P ++ ALL AC +S+ ++G++V ++KL +LSN YA EG W V
Sbjct: 566 PMSPDVPAWGALLGACWKHSDSEVGERVGKKLVKLDPHHDGFQTMLSNIYASEGMWQCVK 625
Query: 441 EARRNMKELQTRKKPGNSIIDLKH 464
+ R +MK+ K G S+++ H
Sbjct: 626 DLRGSMKQ-HVAKVAGCSVVESSH 648
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 122/445 (27%), Positives = 183/445 (41%), Gaps = 74/445 (16%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP-----FRDVGSWN--TLMS 57
+HA + L +D Y + L+ F T AR+L + FR V S N T +
Sbjct: 23 IHAQFLASGLLADAYAASRLLLFTTSA---TAARLLPQPLHHSLQLFRLVRSPNAFTCNT 79
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ G + F D T +L +ACA G+ VH +A K G
Sbjct: 80 LIRAALRQGLPHLCFPLYASMPAAPDTYTHPLLAAACAARGDAREGRQVHSHAVKHGFGD 139
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI---DME--------- 165
L + NAL+ MY+ C + A R+FD G + VS N ++ Y+ D+E
Sbjct: 140 NLYLRNALMHMYSACGCVAGARRVFDA-GPVWDAVSWNTILATYVRDGDVEQAVGVFARM 198
Query: 166 -------------------LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
+V+ AR VFD +D W +M+ + EAL +F
Sbjct: 199 PERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERNDLFVEALAVFS 258
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC- 265
M +EG DE VMVSV++AC+ +Q G + H +++ + V+ ALI MYS C
Sbjct: 259 DMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHMYSSCL 318
Query: 266 ------------------------------GSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G +E+A F KD V+W+ MI G
Sbjct: 319 DVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQ 378
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
+EAL VF M IKP+E T VSV++AC + + +G +L Y+ TI
Sbjct: 379 NNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQG-KLVHEYIRQYQYNITIV 437
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIM 380
L+D+ + G + A E ++
Sbjct: 438 LGTSLIDMYMKCGCMEAALEVFDMV 462
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 111/258 (43%), Gaps = 36/258 (13%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D + NS+I Y + DA+ LF+ MP +D SW+ +++ + S E L +F +
Sbjct: 334 DHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMR 393
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
I D++TLV + SAC L L GK VH Y + + + +L+ MY KC M+
Sbjct: 394 AHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQYQYNITIVLGTSLIDMYMKCGCME 453
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
AL EVFD + +K W +++ G
Sbjct: 454 AAL--------------------------------EVFDMVEEKGTPCWNAVIVGLAMNG 481
Query: 197 QPEEALELFKKMIDEGVT-PDEEVMVSVLSACSSLSNLQYGRLVHRFILQN--NITQDAF 253
+L++F +M G+ P E VLSAC ++ GR + ++QN I +
Sbjct: 482 LVTRSLDMFSEMETSGIAVPSEITFTGVLSACRHGGLVEEGRQFFK-LMQNKYQIIPNIR 540
Query: 254 VKTALIDMYSKCGSLEEA 271
++D+ + G + EA
Sbjct: 541 HYGCMVDLLGRAGYVREA 558
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 165/446 (36%), Positives = 264/446 (59%), Gaps = 3/446 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
+I NS+I G+M +A LF++M +D+ SW+ L+S Y E L++F ++
Sbjct: 237 NIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN 296
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
G+ D++ +V + SACA L + GK +H ++G+E +N++NAL+ MY+ E+
Sbjct: 297 ANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIM 356
Query: 137 EALRLFDEMGSRR-NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195
+A +LF+ GS + +S N +I+G + V+ AR +FD + +KDIV W +++ G +
Sbjct: 357 DAQKLFN--GSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQH 414
Query: 196 KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK 255
E L LF +M + PDE ++VSV+SAC+ L+ L G+ VH +I +N + + +
Sbjct: 415 DCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILG 474
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
T L+DMY KCG +E AL F + K V +W +I GLA GL +L +F +M+ G+
Sbjct: 475 TTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVI 534
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
PNE TF+ VL ACRH GL+ EG F M + ++P ++H+ C+VDLL RAGLL +AE+
Sbjct: 535 PNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEK 594
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
I+ MP ++ ALL AC + + ++G++V +++L +VLLSN +A +G
Sbjct: 595 LIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGD 654
Query: 436 WTEVAEARRNMKELQTRKKPGNSIID 461
W +V E R MK+ K PG S+I+
Sbjct: 655 WEDVLEVRGMMKQQGVVKTPGCSLIE 680
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 178/360 (49%), Gaps = 63/360 (17%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA-RLE 98
+FD++ + WNT+M Y + + + L+L+K ++ + D T ++ ACA RL
Sbjct: 97 IFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLL 156
Query: 99 KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG------------ 146
+ GK +H + KVG + + ++N L+ MYA C M +A +LFDE
Sbjct: 157 EFG-GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILA 215
Query: 147 ------------------SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
+RNIV+ N +I M V A ++F+E+ +KD+V W ++
Sbjct: 216 GYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSAL 275
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ G + EEAL +F +M G+ DE V+VSVLSAC+ LS ++ G+++H +++ I
Sbjct: 276 ISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGI 335
Query: 249 TQDAFVKTALIDMYS-------------------------------KCGSLEEALVTFYK 277
++ ALI MYS KCGS+E+A F
Sbjct: 336 ESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDV 395
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
KD+V+W+ +I G A + +E L +F++M+ I+P+E VSV++AC H + +G
Sbjct: 396 MPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQG 455
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 130/267 (48%), Gaps = 19/267 (7%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
+D + ++FD I + + +W +MM +++ E+AL L+K M+ V PD V+ A
Sbjct: 91 LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150
Query: 227 CSSLSNLQY-GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
C ++ L++ G+ +H +L+ D +V+ LI+MY+ CG++ +A F ++ D V+
Sbjct: 151 C-AVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS 209
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
W +++ G G EA +F QM ++ I + S++ G + E +LF M
Sbjct: 210 WNSILAGYVKKGDVEEAKLIFDQMPQRNIVASN----SMIVLLGKMGQVMEAWKLFNEMD 265
Query: 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE----DKFISYKALLSACITYSE 401
+ + + L+ + G+ +A M A D+ + ++LSAC S
Sbjct: 266 -----EKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVV-SVLSACAHLSI 319
Query: 402 FDLGKKVANNMMKLGNQSHEAYVLLSN 428
GK + ++++G E+YV L N
Sbjct: 320 VKTGKMIHGLVIRMGI---ESYVNLQN 343
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 160/461 (34%), Positives = 259/461 (56%), Gaps = 1/461 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H +K D ++ LI Y DAR+LFDKM D +WN ++ Y
Sbjct: 140 GLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQ 199
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L LF+ + + D + L + SAC L YG+T+H + G ++
Sbjct: 200 NGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHL 259
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ AL+ MYA C MD A +++D + S+ IVS +L +GY + +V AR +FD+++++D
Sbjct: 260 QTALINMYANCGAMDLARKIYDGLSSKHLIVSTAML-SGYAKLGMVKDARFIFDQMIERD 318
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ G ++ QP+EAL+LF +M+ + PD+ M+SV+SACS + L +H
Sbjct: 319 LVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHT 378
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ ++ + V ALIDMY+KCG+L +A F K+V++W++MI A +G +
Sbjct: 379 YVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADS 438
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+++F +M+ I+PN TF+ VL AC H+GL+ EG +LF M + + PT EH+ C+V
Sbjct: 439 AIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMV 498
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL RA L +A E I+ MP I + +L+SAC + E +LG+ A +++L
Sbjct: 499 DLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDG 558
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A V+LSN YA E W +V R++M K+ +S I++
Sbjct: 559 ALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEI 599
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 105/439 (23%), Positives = 189/439 (43%), Gaps = 72/439 (16%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL-IFEGIVADKITLVILFSACARLE 98
+F ++P N L+ + S + + L+ L D+ + L A +++
Sbjct: 76 VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135
Query: 99 KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
++G +H A+K+G ++ L+ MYA C+ + +A LFD+M + V+ N++I
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKM-CHPDAVAWNMII 194
Query: 159 NGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE 218
+GY + ++AL LF+ M + PD
Sbjct: 195 DGY-------------------------------CQNGHYDDALRLFEDMRSSDMKPDSV 223
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE--------- 269
++ +VLSAC NL YGR +H F+ N D+ ++TALI+MY+ CG+++
Sbjct: 224 ILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGL 283
Query: 270 ----------------------EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
+A F + +D+V W+ MI G A EAL++F
Sbjct: 284 SSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFD 343
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEG--CQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
+M +K P++ T +SV++AC H G + + + G R L+D+ +
Sbjct: 344 EMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNN---ALIDMYA 400
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
+ G L +A E + MP ++ IS+ ++++A + D K+ M ++ N
Sbjct: 401 KCGNLVKAREVFENMPRKN-VISWSSMINAFAMHGNADSAIKLFRRMKEV-NIEPNGVTF 458
Query: 426 LSNFYALEGHWTEVAEARR 444
+ YA GH V E +
Sbjct: 459 IGVLYAC-GHAGLVEEGEK 476
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 161/462 (34%), Positives = 258/462 (55%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H ++ K DSD++V +SL+ Y + ++F +M R++ SW +++ Y
Sbjct: 147 GKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQ 206
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L +F++++ G + +TLV + ACA LE L+ GK +H Y K+G++ +++
Sbjct: 207 NRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSL 266
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ +Y KC V+ AR +FD +V ++
Sbjct: 267 TNALIALYGKCGN--------------------------------VETARSLFDGMVVQN 294
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ + A++LF++M E V D MVSV+SAC+SL L GR +H
Sbjct: 295 LVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHE 354
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + + + ALIDMY+KCG+++ A F + C+ VV+WT+MI A++G G +
Sbjct: 355 LVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGED 414
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL++F +M+ +G+KPN TF +V ACRHSGL+ EG + F M Y + P +EH C+V
Sbjct: 415 ALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMV 474
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +A EFI MP E + ALL +C +S +L + VA + L Q+
Sbjct: 475 DLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVT 534
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVL+SN YA G W + A R+ M+E + +K PG+S++++
Sbjct: 535 FYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVEVN 576
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 122/449 (27%), Positives = 214/449 (47%), Gaps = 43/449 (9%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD-ARVLFDKMPFRDVGSWNTLMSIYNDFS 63
+HA V ++ + LI +A D AR +FD+MP RDV WNTL+ Y D
Sbjct: 48 IHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAG 107
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
E L L+ + G+ D T + +CA L L GK VHC K G + + +++
Sbjct: 108 PCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQS 167
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
+L+ MY++ E + MELV F E+V ++IV
Sbjct: 168 SLVAMYSQSGET--------------------------LGMELV------FGEMVVRNIV 195
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W +++ G V+ + +E L +F++M+ G P+ +VSVL AC+ L L G+L+H +
Sbjct: 196 SWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYG 255
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++ + D + ALI +Y KCG++E A F +++V+W MI G A+
Sbjct: 256 IKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAV 315
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEG---CQLFRRMGGVYRVQPTIEHFVCL 360
++F +M+ + + + T VSV++AC G + G +L +R G V T L
Sbjct: 316 KLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSIT----NAL 371
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+D+ ++ G + A E + +P +S+ +++ AC ++ + K+ + M G + +
Sbjct: 372 IDMYAKCGNIDLAREVFERLPCRS-VVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPN 430
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKEL 449
++ + F A H V E R++ + +
Sbjct: 431 -SFTFAAVFTACR-HSGLVEEGRKHFESM 457
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 141/292 (48%), Gaps = 34/292 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K +D D+ + N+LI YG+ AR LFD M +++ SWN +++ Y
Sbjct: 247 LGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYE 306
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + LF+++ E + D IT+V + SACA L L+ G+ +H + GLE ++
Sbjct: 307 QNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVS 366
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC + DLAREVF+ + +
Sbjct: 367 ITNALIDMYAKCGNI--------------------------------DLAREVFERLPCR 394
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V W SM+ C E+AL+LF +M DEGV P+ +V +AC ++ GR
Sbjct: 395 SVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHF 454
Query: 241 RFILQNNITQDAFVKTA-LIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMI 290
++++ A ++D+ + GSL EA K + DV W ++
Sbjct: 455 ESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALL 506
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 173/470 (36%), Positives = 255/470 (54%), Gaps = 8/470 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H ++K+ D+++G+ LI FY + L AR +FD M ++V SWN L++ Y
Sbjct: 174 LGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYE 233
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYML 119
+ E L F ++ G D++TL + SACA L G +H K L
Sbjct: 234 QNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDL 293
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NAL+ MYAKC ++EA +FD M RN VS +++GY V AR +F I
Sbjct: 294 ILGNALVDMYAKCGRVNEARCVFDRM-PVRNAVSETTMVSGYAKSASVKAARSMFATIKQ 352
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KDIV W +++ G + + EEAL LF+ + E V P ++L+A ++L++L+ GR
Sbjct: 353 KDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQA 412
Query: 240 HR------FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
H F Q+ D FV +LIDMY KCGS+EE L F KD V+W TMI G
Sbjct: 413 HSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGY 472
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A G G EAL +F +M G KP+ T + L AC H+GL+ EG + F M + + P
Sbjct: 473 AQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPV 532
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
+H+ C+VDLL RAG L +A++ I+ MP + + + +LLSAC + LGK VA +
Sbjct: 533 KDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIF 592
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++ S YVLL+N Y+ G W + R+ M+ K+PG S ID++
Sbjct: 593 EIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQ 642
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 147/302 (48%), Gaps = 1/302 (0%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D L C +L ++VH + + ++N L+ +Y KC +D A ++F
Sbjct: 23 DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
D M S RN+ S N +I+ + VD + +F + +KD W SM+ G + + EEAL
Sbjct: 83 DRM-SERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEAL 141
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
+ F +M + ++ S LSACS L +L+ G +H I ++ + D F+ + LID Y
Sbjct: 142 DWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFY 201
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
SKCG + A F + K+VV+W +I G EAL F +M G KP+E T
Sbjct: 202 SKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLA 261
Query: 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382
SV++AC EG Q+ R+ + + + LVD+ ++ G + +A MP
Sbjct: 262 SVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPV 321
Query: 383 ED 384
+
Sbjct: 322 RN 323
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 123/497 (24%), Positives = 208/497 (41%), Gaps = 87/497 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM----------------- 44
+ +H + +T ++++ N LI YG+ AR +FD+M
Sbjct: 43 ARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMR 102
Query: 45 --------------PFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
P +D SWN++++ + E L F ++ + V + +
Sbjct: 103 WGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSG 162
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SAC+RL+ L G +H +K + M + L+ Y+KC + A R+FD M +N
Sbjct: 163 LSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGM-EEKN 221
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE-EALELFKKMI 209
+VS N LI C + P EALE F +M
Sbjct: 222 VVSWNCLIT--------------------------------CYEQNGPAIEALEAFGRMT 249
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSL 268
+ G PDE + SV+SAC++L+ + G +H R + + D + AL+DMY+KCG +
Sbjct: 250 ELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRV 309
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
EA F + ++ V+ TTM+ G A A +F +++K I ++ +++A
Sbjct: 310 NEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDI----VSWNALIAGY 365
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHF-------VCLVDL-LSRAGLLYQAEEFIKIM 380
+G E LF RM V PT F L DL L R + + +
Sbjct: 366 TQNGENEEALGLF-RMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQ 424
Query: 381 PAE--DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438
E D F+ +L+ + + G +V NM++ + H ++ + YA G+ E
Sbjct: 425 SGEEPDIFVG-NSLIDMYMKCGSVEEGLRVFENMVE---KDHVSWNTMIIGYAQNGYGME 480
Query: 439 VAEARRNMKELQTRKKP 455
E + M L++ +KP
Sbjct: 481 ALELFQKM--LESGEKP 495
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 181/531 (34%), Positives = 275/531 (51%), Gaps = 71/531 (13%)
Query: 4 GLHAHVTKTALDS--DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G AH +DS D++VG+SL++ Y + L +AR +FD MP R+ SW T++S Y
Sbjct: 127 GRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYAS 186
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L LF+ + E ++ + SA E ++ GK +HC A K GL ++++
Sbjct: 187 QKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSV 246
Query: 122 ENALLLMYAKCKEMDE-------------------------------ALRLFDEM---GS 147
NAL+ MYAKC +D+ AL+LF M G
Sbjct: 247 GNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGI 306
Query: 148 RRNIVSLNILING--------------------------YIDMELVDL---------ARE 172
R + + +IN Y+ LVD+ AR+
Sbjct: 307 RPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARK 366
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
FD + + DIVLW SM+ G V+ + E+AL L+ +M EG+ P+E M SVL ACSSL+
Sbjct: 367 GFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAA 426
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L+ G+ +H ++ + + +AL MY+KCG L++ + F + +DV++W MI G
Sbjct: 427 LEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISG 486
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
L+ G G EAL +F +M+ +G KP+ TFV++L+AC H GL+ G FR M + + P
Sbjct: 487 LSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDP 546
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
+EH+ C+VD+LSRAG L +A EF + + ++ +L AC Y ++LG +
Sbjct: 547 RVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKL 606
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
M+LG+Q AYVLLS+ Y+ G W +V RR MK K+PG S I+LK
Sbjct: 607 MELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIELK 657
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 127/453 (28%), Positives = 207/453 (45%), Gaps = 74/453 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LHA + K++ S +Y+ NSL++ Y + +A+ +F+++ +DV SWN +++ Y+
Sbjct: 25 GKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQ 83
Query: 62 FSDSGE--VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
SG V+ LF+++ E + T +F+A + L G+ H A K+ +
Sbjct: 84 HGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDV 143
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ ++L+ MY K EA ++FD M RN VS +I+GY +L
Sbjct: 144 FVGSSLMNMYCKAGLTPEARKVFDTM-PERNSVSWATMISGYASQKLA------------ 190
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
EAL LF+ M E +E V SVLSA + + G+ +
Sbjct: 191 -------------------AEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQI 231
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++N + V AL+ MY+KCGSL++AL TF + K+ +TW+ MI G A G
Sbjct: 232 HCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDS 291
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF------------------ 341
++AL++F M GI+P+E TFV V+ AC G EG Q+
Sbjct: 292 DKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTAL 351
Query: 342 ------------RRMGGVYRVQPTIEHFVCLVDLLSRAG------LLYQAEEFIKIMPAE 383
R G Y +P I + ++ + G LY E I+P E
Sbjct: 352 VDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNE 411
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
++ ++L AC + + + GK++ +K G
Sbjct: 412 ---LTMASVLKACSSLAALEQGKQIHARTVKYG 441
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 143/299 (47%), Gaps = 38/299 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H ++ K +S IYV +L+ Y + + DAR FD + D+ W +++ Y
Sbjct: 329 GKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQ 388
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
++ + L L+ ++ EGI+ +++T+ + AC+ L L GK +H K G + +
Sbjct: 389 NGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPI 448
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+AL MYAKC + + +F M + R+++S N +I+G
Sbjct: 449 GSALSTMYAKCGCLKDGTLVFRRMPA-RDVISWNAMISGL-------------------- 487
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+GC K EALELF++M EG PD V++LSACS + ++ G R
Sbjct: 488 ------SQNGCGK-----EALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFR 536
Query: 242 FILQNNITQDAFVK--TALIDMYSKCGSLEEALVTFYKTDCKD--VVTWTTMIEGLANY 296
+ + D V+ ++D+ S+ G L+EA + F ++ D + W ++ NY
Sbjct: 537 MMF-DEFGMDPRVEHYACMVDILSRAGKLKEA-IEFTESATIDHGMCLWRIILGACRNY 593
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 152/336 (45%), Gaps = 47/336 (13%)
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK--AKQPEEALELFKKMIDEG 212
N L+N Y + + A+ VF+ I +KD+V W +++G + +ELF++M E
Sbjct: 44 NSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAEN 103
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
P+ V +A S+L + GRL H ++ + +D FV ++L++MY K G EA
Sbjct: 104 TAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEAR 163
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F ++ V+W TMI G A+ L EAL +F M R+ NE F SVL+A
Sbjct: 164 KVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPE 223
Query: 333 LITEGCQ----------------------LFRRMGGVYRVQPTIE--------HFVCLVD 362
L+ G Q ++ + G + T E + ++
Sbjct: 224 LVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMIT 283
Query: 363 LLSRAG------LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+++G L+ + I P+E F+ +++AC GK+V + ++KLG
Sbjct: 284 GYAQSGDSDKALKLFSSMHLSGIRPSEFTFV---GVINACSDLGAAWEGKQVHDYLLKLG 340
Query: 417 NQSHEAYVL--LSNFYALEGHWTEVAEARRNMKELQ 450
+S + YV+ L + YA + + +AR+ LQ
Sbjct: 341 FES-QIYVMTALVDMYA---KCSSIVDARKGFDYLQ 372
>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
Length = 922
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 160/442 (36%), Positives = 248/442 (56%), Gaps = 2/442 (0%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N+LI Y + + +A+ LFDKMPFR+ SW +++ Y S E L L ++L G++
Sbjct: 357 NALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGML 416
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
+L +F AC+ + L G VH A KVG ++ NAL+ MY KC+ M+ A ++
Sbjct: 417 PSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQV 476
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
F M ++ +IVS N + + +L+D AR FD ++ +D V W +++ A+Q EA
Sbjct: 477 FSRMVTK-DIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEA 535
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
+ FK M E P+ ++ +L C SL + G+ +H ++ + + V ALI M
Sbjct: 536 MGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISM 595
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y KCG + + F + +D+ TW T+I G A +GLG EA++++ ME G+ PNE TF
Sbjct: 596 YFKCGCADSRRI-FDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTF 654
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
V +L AC H+GL+ EG + F+ M Y + P EH+ C+VDLL R G + AE+FI MP
Sbjct: 655 VGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMP 714
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
E + + ALL AC + ++GK+ A + ++ + YV+LSN Y+ G W EVAE
Sbjct: 715 IEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAE 774
Query: 442 ARRNMKELQTRKKPGNSIIDLK 463
R+ MK+ K+PG S +K
Sbjct: 775 VRKIMKQQGVIKEPGCSWTQIK 796
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 188/372 (50%), Gaps = 28/372 (7%)
Query: 29 GRMALFTDARVLFDKMPFRDVGSWNTLMSIY--NDFSDSGEVLILFKQLIFEGIVADKI- 85
GR+ +AR +FD MP RD+ +WN+++S Y N D+ L ++ I +
Sbjct: 45 GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDL-------YDAISGGNMR 97
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T IL S RL ++ + V LE NA++ Y + ++ A RLFD M
Sbjct: 98 TGAILLSGYGRLGRVLEARRVF----DGMLERNTVAWNAMISCYVQNGDITMARRLFDAM 153
Query: 146 GSRRNIVSLNILINGYI-DMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
SR ++ S N ++ GY +++VD AR +F+++ ++++V W M+ G + + +A ++
Sbjct: 154 PSR-DVSSWNSMLTGYCHSLQMVD-ARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDI 211
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
F KM EG+ PD+ S LSA L NL + L+ +D + TA++++YS+
Sbjct: 212 FCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSR 271
Query: 265 CGSLEEALVTFYKTDC-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
S+ + + F+++ ++ TW+TMI L++ G + A+ V+ + K I A ++
Sbjct: 272 DTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTA-LIT 330
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
LA C G I + LF ++ +P + + L+ + G++ +A+E MP
Sbjct: 331 GLAQC---GRIDDARILFEQI-----PEPIVVSWNALITGYMQNGMVNEAKELFDKMPFR 382
Query: 384 DKFISYKALLSA 395
+ IS+ +++
Sbjct: 383 NT-ISWAGMIAG 393
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 166/390 (42%), Gaps = 66/390 (16%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ NS++ Y DAR LF+KMP R++ SW ++S Y + G+ +F ++
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK-CKEM 135
EG++ D+ SA L L +++ A K G E + + A+L +Y++ +
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVL 276
Query: 136 DEALRLFDEM-----------------GSR-------------RNIVSLNILINGYIDME 165
D A++ F+ M G R ++I LI G
Sbjct: 277 DTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCG 336
Query: 166 LVDLAR-------------------------------EVFDEIVDKDIVLWRSMMHGCVK 194
+D AR E+FD++ ++ + W M+ G +
Sbjct: 337 RIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQ 396
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+ EEAL L +++ G+ P + S+ ACS++ L+ G VH ++ ++F
Sbjct: 397 NGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFA 456
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
ALI MY KC ++E A F + KD+V+W + + L L +EA F M +
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----L 512
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRM 344
++ ++ ++++A H+ E F+ M
Sbjct: 513 SRDDVSWTTIISAYAHAEQSNEAMGAFKTM 542
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 157/369 (42%), Gaps = 72/369 (19%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
DI NS + + L +AR FD M RD SW T++S Y S E + FK +
Sbjct: 484 DIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMF 543
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
E + + L IL C L G+ +H A K+G++ L + NAL+ MY KC D
Sbjct: 544 CEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD 603
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+ R+FD M R+I + N +I GY HG +
Sbjct: 604 -SRRIFDLM-EERDIFTWNTIITGYAQ--------------------------HGLGR-- 633
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
EA+++++ M GV P+E V +L+ACS + G + +++QD + T
Sbjct: 634 ---EAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEG-----WKFFKSMSQD-YGLT 684
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
L + Y+ M++ L G A + Y M I+P
Sbjct: 685 PLPEHYA------------------------CMVDLLGRTGDVQGAEQFIYDMP---IEP 717
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMG-GVYRVQPT-IEHFVCLVDLLSRAGLLYQAE 374
+ + ++L AC+ I + ++ +R ++R++P+ ++V L ++ S G+ +
Sbjct: 718 DTVIWSALLGACK----IHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVA 773
Query: 375 EFIKIMPAE 383
E KIM +
Sbjct: 774 EVRKIMKQQ 782
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 86/204 (42%), Gaps = 41/204 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H K +DS++ V N+LI Y + D+R +FD M RD+ +WNT+++ Y
Sbjct: 569 IGQQIHTVAIKLGMDSELIVANALISMYFKCGC-ADSRRIFDLMEERDIFTWNTIITGYA 627
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E + +++ + G++ +++T V L +AC + GL
Sbjct: 628 QHGLGREAIKMYQHMESAGVLPNEVTFVGLLNAC----------------SHAGL----- 666
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM-----ELVDLAREVFD 175
+DE + F M + L +D+ ++ + ++D
Sbjct: 667 --------------VDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYD 712
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPE 199
++ D V+W +++ C K E
Sbjct: 713 MPIEPDTVIWSALLGACKIHKNAE 736
>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 160/442 (36%), Positives = 248/442 (56%), Gaps = 2/442 (0%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N+LI Y + + +A+ LFDKMPFR+ SW +++ Y S E L L ++L G++
Sbjct: 357 NALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGML 416
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
+L +F AC+ + L G VH A KVG ++ NAL+ MY KC+ M+ A ++
Sbjct: 417 PSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQV 476
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
F M ++ +IVS N + + +L+D AR FD ++ +D V W +++ A+Q EA
Sbjct: 477 FSRMVTK-DIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEA 535
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
+ FK M E P+ ++ +L C SL + G+ +H ++ + + V ALI M
Sbjct: 536 MGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISM 595
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y KCG + + F + +D+ TW T+I G A +GLG EA++++ ME G+ PNE TF
Sbjct: 596 YFKCGCADSRRI-FDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTF 654
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
V +L AC H+GL+ EG + F+ M Y + P EH+ C+VDLL R G + AE+FI MP
Sbjct: 655 VGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMP 714
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
E + + ALL AC + ++GK+ A + ++ + YV+LSN Y+ G W EVAE
Sbjct: 715 IEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAE 774
Query: 442 ARRNMKELQTRKKPGNSIIDLK 463
R+ MK+ K+PG S +K
Sbjct: 775 VRKIMKQQGVIKEPGCSWTQIK 796
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 188/372 (50%), Gaps = 28/372 (7%)
Query: 29 GRMALFTDARVLFDKMPFRDVGSWNTLMSIY--NDFSDSGEVLILFKQLIFEGIVADKI- 85
GR+ +AR +FD MP RD+ +WN+++S Y N D+ L ++ I +
Sbjct: 45 GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDL-------YDAISGGNMR 97
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T IL S RL ++ + V LE NA++ Y + ++ A RLFD M
Sbjct: 98 TGAILLSGYGRLGRVLEARRVF----DGMLERNTVAWNAMISCYVQNGDITMARRLFDAM 153
Query: 146 GSRRNIVSLNILINGYI-DMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
SR ++ S N ++ GY +++VD AR +F+++ ++++V W M+ G + + +A ++
Sbjct: 154 PSR-DVSSWNSMLTGYCHSLQMVD-ARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDI 211
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
F KM EG+ PD+ S LSA L NL + L+ +D + TA++++YS+
Sbjct: 212 FCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSR 271
Query: 265 CGSLEEALVTFYKTDC-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
S+ + + F+++ ++ TW+TMI L++ G + A+ V+ + K I A ++
Sbjct: 272 DTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTA-LIT 330
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
LA C G I + LF ++ +P + + L+ + G++ +A+E MP
Sbjct: 331 GLAQC---GRIDDARILFEQI-----PEPIVVSWNALITGYMQNGMVNEAKELFDKMPFR 382
Query: 384 DKFISYKALLSA 395
+ IS+ +++
Sbjct: 383 NT-ISWAGMIAG 393
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 166/390 (42%), Gaps = 66/390 (16%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ NS++ Y DAR LF+KMP R++ SW ++S Y + G+ +F ++
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK-CKEM 135
EG++ D+ SA L L +++ A K G E + + A+L +Y++ +
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVL 276
Query: 136 DEALRLFDEM-----------------GSR-------------RNIVSLNILINGYIDME 165
D A++ F+ M G R ++I LI G
Sbjct: 277 DTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCG 336
Query: 166 LVDLAR-------------------------------EVFDEIVDKDIVLWRSMMHGCVK 194
+D AR E+FD++ ++ + W M+ G +
Sbjct: 337 RIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQ 396
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+ EEAL L +++ G+ P + S+ ACS++ L+ G VH ++ ++F
Sbjct: 397 NGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFA 456
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
ALI MY KC ++E A F + KD+V+W + + L L +EA F M +
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----L 512
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRM 344
++ ++ ++++A H+ E F+ M
Sbjct: 513 SRDDVSWTTIISAYAHAEQSNEAMGAFKTM 542
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 157/369 (42%), Gaps = 72/369 (19%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
DI NS + + L +AR FD M RD SW T++S Y S E + FK +
Sbjct: 484 DIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMF 543
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
E + + L IL C L G+ +H A K+G++ L + NAL+ MY KC D
Sbjct: 544 CEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD 603
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+ R+FD M R+I + N +I GY HG +
Sbjct: 604 -SRRIFDLM-EERDIFTWNTIITGYAQ--------------------------HGLGR-- 633
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
EA+++++ M GV P+E V +L+ACS + G + +++QD + T
Sbjct: 634 ---EAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEG-----WKFFKSMSQD-YGLT 684
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
L + Y+ M++ L G A + Y M I+P
Sbjct: 685 PLPEHYA------------------------CMVDLLGRTGDVQGAEQFIYDMP---IEP 717
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMG-GVYRVQPT-IEHFVCLVDLLSRAGLLYQAE 374
+ + ++L AC+ I + ++ +R ++R++P+ ++V L ++ S G+ +
Sbjct: 718 DTVIWSALLGACK----IHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVA 773
Query: 375 EFIKIMPAE 383
E KIM +
Sbjct: 774 EVRKIMKQQ 782
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 86/204 (42%), Gaps = 41/204 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H K +DS++ V N+LI Y + D+R +FD M RD+ +WNT+++ Y
Sbjct: 569 IGQQIHTVAIKLGMDSELIVANALISMYFKCGC-ADSRRIFDLMEERDIFTWNTIITGYA 627
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E + +++ + G++ +++T V L +AC + GL
Sbjct: 628 QHGLGREAIKMYQHMESAGVLPNEVTFVGLLNAC----------------SHAGL----- 666
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM-----ELVDLAREVFD 175
+DE + F M + L +D+ ++ + ++D
Sbjct: 667 --------------VDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYD 712
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPE 199
++ D V+W +++ C K E
Sbjct: 713 MPIEPDTVIWSALLGACKIHKNAE 736
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 158/463 (34%), Positives = 271/463 (58%), Gaps = 1/463 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK + +++++ ++ + N+L+ Y + AR +FD+ +++ +NT+MS Y
Sbjct: 249 LGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYV 308
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ +VL++ +++ +G DK+T++ +ACA+L L GK+ H Y + GLE N
Sbjct: 309 HHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDN 368
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NA++ MY KC + + A ++F+ M + +V+ N LI G + ++LA +FDE++++
Sbjct: 369 ISNAIIDMYMKCGKREAACKVFEHM-PNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLER 427
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ V+ EEA+ELF++M ++G+ D MV + SAC L L + V
Sbjct: 428 DLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVC 487
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I +N+I D + TAL+DM+S+CG A+ F + + +DV WT I +A G
Sbjct: 488 TYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTE 547
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ +F +M + +KP++ FV++L AC H G + +G QLF M + ++P I H+ C+
Sbjct: 548 GAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCM 607
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A + I+ MP E + + +LL+AC + +L A + +L +
Sbjct: 608 VDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERV 667
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLLSN YA G WT+VA R MKE +K PG+S I+++
Sbjct: 668 GIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQ 710
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/417 (29%), Positives = 191/417 (45%), Gaps = 70/417 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H V K L+ DI+V NSLIHFY R LFD M R+V SW +L++ Y+
Sbjct: 149 GVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSG 208
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E + LF Q+ G+ + +T+V + SACA+L+ L GK V Y +++G+E M
Sbjct: 209 RDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIM 268
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC ++ A ++FDE + +N+V N +++ Y+ E
Sbjct: 269 VNALVDMYMKCGDICAARQIFDEC-ANKNLVMYNTIMSNYVHHE---------------- 311
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
W S + L + +M+ +G PD+ M+S ++AC+ L +L G+ H
Sbjct: 312 ---WAS------------DVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHA 356
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG---- 297
++L+N + + A+IDMY KCG E A F K VVTW ++I GL G
Sbjct: 357 YVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMEL 416
Query: 298 ---------------------------LGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
+ EA+ +F +M+ +GI + T V + +AC +
Sbjct: 417 AWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGY 476
Query: 331 SG---LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
G L C + + ++ LVD+ SR G A K M D
Sbjct: 477 LGALDLAKWVCTYIEK----NDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRD 529
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/470 (25%), Positives = 219/470 (46%), Gaps = 64/470 (13%)
Query: 1 MGKGLHAHVTKTALD----SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM 56
M KGL H + L+ S + +G Y R A F D D + +N L+
Sbjct: 49 MKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNA-FGD-----DDGNMASLFMYNCLI 102
Query: 57 SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
Y + ++L+ Q++ GIV DK T L SAC+++ L G VH K+GLE
Sbjct: 103 RGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLE 162
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + N+L+ YA+C ++D +LFD M RN+VS LINGY +L
Sbjct: 163 GDIFVSNSLIHFYAECGKVDLGRKLFDGM-LERNVVSWTSLINGYSGRDL---------- 211
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+EA+ LF +M + GV P+ MV V+SAC+ L +L+ G
Sbjct: 212 ---------------------SKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELG 250
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+ V +I + + + AL+DMY KCG + A F + K++V + T++ ++
Sbjct: 251 KKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHH 310
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
++ L + +M +KG +P++ T +S +AAC G ++ G + Y ++ +E
Sbjct: 311 EWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVG-----KSSHAYVLRNGLEG 365
Query: 357 F----VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
+ ++D+ + G A + + MP + +++ +L++ + + +L ++ + M
Sbjct: 366 WDNISNAIIDMYMKCGKREAACKVFEHMPNK-TVVTWNSLIAGLVRDGDMELAWRIFDEM 424
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVA---EARRNMKELQTRKKPGNSI 459
++ L ++ + G +V+ EA +E+Q + PG+ +
Sbjct: 425 LERD---------LVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRV 465
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 164/471 (34%), Positives = 259/471 (54%), Gaps = 8/471 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H+ + K+ SD+Y+G++L+ Y + DA+ +FD+M R+V SWN+L++ Y
Sbjct: 171 GVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQ 230
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLN 120
+ E L +F+ ++ + D++TL + SACA L + G+ VH K+ L +
Sbjct: 231 NGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDII 290
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NA + MYAKC + EA +FD M RN+++ +++GY AR +F ++ ++
Sbjct: 291 LSNAFVDMYAKCSRIKEARFIFDSM-PIRNVIAETSMVSGYAMAASTKAARLMFTKMAER 349
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR--- 237
++V W +++ G + + EEAL LF + E V P ++L AC+ L++L G
Sbjct: 350 NVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAH 409
Query: 238 ---LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
L H F Q+ D FV +LIDMY KCG +EE + F K +D V+W MI G A
Sbjct: 410 VHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFA 469
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
G GNEAL +F +M G KP+ T + VL+AC H+G + EG F M + V P
Sbjct: 470 QNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLR 529
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+H+ C+VDLL RAG L +A+ I+ MP + + + +LL+AC + LGK VA + +
Sbjct: 530 DHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFE 589
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+ + YVLLSN YA G W + R+ M++ K+PG S I + +
Sbjct: 590 VETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPGH 640
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 154/297 (51%), Gaps = 6/297 (2%)
Query: 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
+ VH K G + ++N L+ YAKC +++ +LFD+M +RN+ + N ++ G
Sbjct: 40 RCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKM-PQRNVFTWNSVVTGLTK 98
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223
+ +D A +F + ++D W SM+ G + + EEAL F M EG +E S
Sbjct: 99 LGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASG 158
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
LSACS L+++ G +H I ++ D ++ +AL+DMYSKCG++ +A F + ++V
Sbjct: 159 LSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNV 218
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
V+W ++I G EAL+VF M ++P+E T SV++AC I G ++ R
Sbjct: 219 VSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHAR 278
Query: 344 MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP-----AEDKFISYKALLSA 395
+ + +++ I VD+ ++ + +A MP AE +S A+ ++
Sbjct: 279 VVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAAS 335
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 173/388 (44%), Gaps = 97/388 (25%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS-----IY 59
+HA V K+ +++++ N LI Y + D R LFDKMP R+V +WN++++ +
Sbjct: 42 VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101
Query: 60 NDFSDS--------------------------GEVLILFKQLIFEGIVADKITLVILFSA 93
D +DS E L F + EG V ++ T SA
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
C+ L ++ G +H K + + +AL+ MY+KC +++A ++FDEMG RN+VS
Sbjct: 162 CSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGD-RNVVS 220
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE-EALELFKKMIDEG 212
N LI C + P EAL++F+ M++
Sbjct: 221 WNSLIT--------------------------------CYEQNGPAVEALKVFQVMLESW 248
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEE- 270
V PDE + SV+SAC+SLS ++ G+ VH R + + + D + A +DMY+KC ++E
Sbjct: 249 VEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEA 308
Query: 271 ------------------------------ALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
A + F K ++VV+W +I G G
Sbjct: 309 RFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENE 368
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAAC 328
EAL +F ++R+ + P TF ++L AC
Sbjct: 369 EALSLFCLLKRESVCPTHYTFANILKAC 396
>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 742
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 159/447 (35%), Positives = 256/447 (57%), Gaps = 6/447 (1%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ ++I +M L DAR L + P R+V +W L+S Y+ + E + F ++
Sbjct: 170 DVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSML 229
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN---ALLLMYAKCK 133
+GI D++T++ + SAC +L+ L++G ++H VG + ML + AL+ MYAKC
Sbjct: 230 SDGIAPDEVTVIGMLSACGQLKDLNFGCSLHML---VGDKRMLMSDKLVVALIDMYAKCG 286
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
+ A +FD +G R N +I+GY + VD+AR +FD++ D D++ + S++ G +
Sbjct: 287 DTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYI 346
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ EAL LF KM G+ D MV +L+A +SL L GR +H I Q + +D +
Sbjct: 347 HGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVY 406
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
+ TAL+DMY KCG +EEA+V F + +DV TW+ MI GLA G+G AL F+ M+ G
Sbjct: 407 LGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDG 466
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
N T+++VL AC HS L+ EG F M ++ ++P IEH+ C++DLL R+GLL +A
Sbjct: 467 FHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEA 526
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE 433
+ ++ MP + + + ++LSAC + DL + A++++KL YV + N Y
Sbjct: 527 MDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDS 586
Query: 434 GHWTEVAEARRNMKELQTRKKPGNSII 460
W + ++ RR M++ +K G S I
Sbjct: 587 RQWEDASKIRRLMEKRGVKKTAGYSSI 613
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 147/309 (47%), Gaps = 10/309 (3%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL-E 98
LFD+MP L + + S +IL++++ + D T LF CAR
Sbjct: 59 LFDRMPCSTFLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGA 118
Query: 99 KLHYGKTVH--CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
+ G+ +H C+ T + L + + ++ MYA+ +A R FDE S +++V+
Sbjct: 119 HVLLGRMLHAACFRTLLPSAVPL-IASPIIHMYAELGLPGDARRAFDE-ASVKDVVAWTT 176
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
+I+G M L+D AR + +++V W ++ G +A + EA++ F M+ +G+ PD
Sbjct: 177 VISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPD 236
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
E ++ +LSAC L +L +G +H + + + ALIDMY+KCG A F
Sbjct: 237 EVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFD 296
Query: 277 KTD-CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335
+ W MI+G G + A +F QME + TF S++ H G +
Sbjct: 297 ALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDV----ITFNSLITGYIHGGRLR 352
Query: 336 EGCQLFRRM 344
E LF +M
Sbjct: 353 EALLLFTKM 361
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 108/263 (41%), Gaps = 35/263 (13%)
Query: 184 LWRSMMHGCVKAKQ-PEEALELFKKMIDEGVTPDEEVMVSVLSACS-SLSNLQYGRLVH- 240
L+ + + C +A P+ + L+++M V PD + C+ +++ GR++H
Sbjct: 69 LFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHA 128
Query: 241 ---RFILQNNIT----------------------------QDAFVKTALIDMYSKCGSLE 269
R +L + + +D T +I +K G L+
Sbjct: 129 ACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLD 188
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+A + ++VVTWT +I G + G EA+ F M GI P+E T + +L+AC
Sbjct: 189 DARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACG 248
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
+ GC L +G R+ + + V L+D+ ++ G +A E + +
Sbjct: 249 QLKDLNFGCSLHMLVGD-KRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPW 307
Query: 390 KALLSACITYSEFDLGKKVANNM 412
A++ D+ + + + M
Sbjct: 308 NAMIDGYCKVGHVDIARSLFDQM 330
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 115/255 (45%), Gaps = 25/255 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IY 59
G+ LHA + + ++ D+Y+G +L+ Y + +A V F +M RDV +W+ ++ +
Sbjct: 389 GRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAF 448
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N + L F + +G A+ +T + + +AC+ L G+ Y ++ L + +
Sbjct: 449 NGMGKAA--LEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRL---YFDEMRLLHNI 503
Query: 120 NME----NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ ++ + + +DEA+ L M + N V +++ + VDLA+
Sbjct: 504 RPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAH 563
Query: 176 EIV---DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
++ + ++ M + + ++Q E+A ++ + M GV + S+
Sbjct: 564 HLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKRGV-----------KKTAGYSS 612
Query: 233 LQYGRLVHRFILQNN 247
+ VH+FI+ +
Sbjct: 613 IAVAGQVHKFIVGDR 627
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 163/444 (36%), Positives = 251/444 (56%), Gaps = 2/444 (0%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
+S++ +GR + +AR +FD+ RD+ +W ++S + E L +F + E
Sbjct: 204 SSMVSLFGRRGMVEEARGVFDEAECRDIFTWTAMISCFERNDMFAEALHMFSCMRREMWP 263
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
D+ +V + +ACA+ E + G+ H + GL +LN++N L+ MY+ C ++ A RL
Sbjct: 264 VDEALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNIQNVLIHMYSCCLDVVAARRL 323
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
FD G + S N +I GY+ V+ A +F + DKD V W +M+ GCV+ Q A
Sbjct: 324 FDS-GDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHA 382
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L +F M +GV PDE +VSV+SAC++LS L+ G+ VH ++ QN + T+LIDM
Sbjct: 383 LTVFDNMRAQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITLVLGTSLIDM 442
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK-PNEAT 320
Y KCG LE A+ F + K W +I GLA GL ++L +F +ME PNE T
Sbjct: 443 YMKCGYLEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEIT 502
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
F VL+ACRH+GL+ EG F+ M Y++ P I H+ C+VDLL RAG + +AE+ I+ M
Sbjct: 503 FTGVLSACRHAGLVEEGRHFFKLMQHKYQIVPNIRHYGCMVDLLGRAGYVKEAEDLIESM 562
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440
P ++ ALL AC + E ++G++V ++ L + +LSN YA EG W V
Sbjct: 563 PMSPDVPAWGALLGACWKHGENEVGERVGRKLVNLDPRHDGFQTMLSNIYAKEGMWQSVN 622
Query: 441 EARRNMKELQTRKKPGNSIIDLKH 464
+ R +MK+ K G S++++ H
Sbjct: 623 DLRDSMKQRHVPKVSGYSVVEMSH 646
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 156/362 (43%), Gaps = 68/362 (18%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D T IL +ACA + G+ V +A + G L + NAL+ MY+ C + +A R+F
Sbjct: 102 DTYTHPILAAACAARRDVSEGRQVQSHAIRHGFGDDLYLRNALMHMYSVCGCLWDARRVF 161
Query: 143 DEMGSRRNIVSLNILINGYI---DME----------------------------LVDLAR 171
D G + VS N ++ Y+ D++ +V+ AR
Sbjct: 162 DA-GPVWDAVSWNTILAAYVHAGDVDQAVGVFARMPKRNATAVSSMVSLFGRRGMVEEAR 220
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
VFDE +DI W +M+ + EAL +F M E DE +MVSV++AC+
Sbjct: 221 GVFDEAECRDIFTWTAMISCFERNDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQSE 280
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC-------------------------- 265
++ G L H +++ + ++ LI MYS C
Sbjct: 281 VIRNGELCHGLVIRAGLCSLLNIQNVLIHMYSCCLDVVAARRLFDSGDCLDQFSWNSMIA 340
Query: 266 -----GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
G +E A+ F KD V+W+TMI G + AL VF M +G++P+E T
Sbjct: 341 GYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRPDEVT 400
Query: 321 FVSVLAACRHSGLITEGCQL--FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
VSV++AC + + +G + + R Y T+ L+D+ + G L A +
Sbjct: 401 IVSVISACTNLSALEKGKSVHDYVRQNKCY---ITLVLGTSLIDMYMKCGYLEAAMDVFN 457
Query: 379 IM 380
IM
Sbjct: 458 IM 459
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 134/318 (42%), Gaps = 47/318 (14%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D + NS+I Y + +A LF MP +D SW+T++S + S L +F +
Sbjct: 331 DQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMR 390
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+G+ D++T+V + SAC L L GK+VH Y + L + +L+ MY KC
Sbjct: 391 AQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMKC---- 446
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
GY++ A +VF+ + +K W +++ G
Sbjct: 447 -----------------------GYLEA-----AMDVFNIMEEKGAPCWNAVIVGLAMNG 478
Query: 197 QPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQNNITQ 250
++LE+F +M P+E VLSAC ++ GR + H++ + NI
Sbjct: 479 LVTKSLEIFSEMEASSTAIPNEITFTGVLSACRHAGLVEEGRHFFKLMQHKYQIVPNIRH 538
Query: 251 DAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
++D+ + G ++EA L+ DV W ++ +G RV +
Sbjct: 539 ----YGCMVDLLGRAGYVKEAEDLIESMPMS-PDVPAWGALLGACWKHGENEVGERVGRK 593
Query: 309 MERKGIKPNEATFVSVLA 326
+ + P F ++L+
Sbjct: 594 L--VNLDPRHDGFQTMLS 609
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
+++ + A P L L+ + +PD + +AC++ ++ GR V +++
Sbjct: 76 TLLKAALLAGMPHLCLPLYTSL---PASPDTYTHPILAAACAARRDVSEGRQVQSHAIRH 132
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
D +++ AL+ MYS CG L +A F D V+W T++ + G ++A+ VF
Sbjct: 133 GFGDDLYLRNALMHMYSVCGCLWDARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVGVF 192
Query: 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
+M ++ N S+++ G++ E +F
Sbjct: 193 ARMPKR----NATAVSSMVSLFGRRGMVEEARGVF 223
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 168/463 (36%), Positives = 255/463 (55%), Gaps = 34/463 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+G+ A+ K L +D +V +SLIH Y A++LFD + V WN +++ Y
Sbjct: 137 VGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYM 196
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ EV+ +FK ++ G+ D+ITLV + +AC R+ GK V Y + GL N
Sbjct: 197 KNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRN 256
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAKC E+ +A R +FD + +
Sbjct: 257 LMTALIDMYAKCGELGKA--------------------------------RRLFDGMQSR 284
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ G +A Q EAL LF +M V P++ MVSVLSAC+ L L+ G+ VH
Sbjct: 285 DVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVH 344
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I + ++ + TAL+D Y+KCG +++A+ F K+ TWT +I+G+A G G
Sbjct: 345 SYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGR 404
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F M + I+P + TF+ VL AC HS L+ EG + F M Y ++P EH+ C+
Sbjct: 405 EALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCV 464
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGL+ +A +FI+ MP E + ++ALLS+C + ++G++ ++ L N SH
Sbjct: 465 VDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSL-NPSH 523
Query: 421 EA-YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+LLSN YA G W A R+ MK+ K PG S+I+L
Sbjct: 524 SGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIEL 566
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 14/224 (6%)
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
VL R+++H A PE+AL LF +M+D V PD+ + L +CS + L GR +
Sbjct: 88 VLMRALLH----AGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQA 143
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ ++ + D FV ++LI MY+ C + A + F + VV W +I G E
Sbjct: 144 YAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWME 203
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG--GVYRVQPTIEHFVC 359
+ +F M G+ +E T VSV+ AC G G + + G+ R +
Sbjct: 204 VVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNR---NLMTA 260
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
L+D+ ++ G L +A M + D +++ A++S Y++ D
Sbjct: 261 LIDMYAKCGELGKARRLFDGMQSRD-VVAWSAMISG---YTQAD 300
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 164/461 (35%), Positives = 251/461 (54%), Gaps = 32/461 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH H TK SD Y+ N+L++ Y AR +FDKM + V SW T++ Y
Sbjct: 156 GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQ 215
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + LF+++ + ++ITLV + +ACAR L K VH Y + G+ + +
Sbjct: 216 WDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVL 275
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+AL+ +Y KC LAR++F+++ +K+
Sbjct: 276 TSALMDVYCKCG--------------------------------CYPLARDLFNKMPEKN 303
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W M++G V+ EEAL LF +M GV D+ M S+L AC+ L L+ G+ +H
Sbjct: 304 LFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHV 363
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I + I D + TAL+DMY+KCGS+E A+ F + KDV+TWT +I GLA G G +
Sbjct: 364 YIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLK 423
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F++M+ +KP+ TFV VLAAC H+GL+ EG F M Y +QP+IEH+ C+V
Sbjct: 424 ALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMV 483
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L RAG + +AE+ I+ MP + LLSAC + + ++ A +++L ++
Sbjct: 484 DMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGG 543
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN Y+ +W + R M E +K PG S I++
Sbjct: 544 TYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEV 584
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 1/146 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH ++ K ++ D+ +G +L+ Y + A +F +MP +DV +W L+
Sbjct: 357 LGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLA 416
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
+ L LF ++ + D IT V + +AC+ ++ G + K G++ +
Sbjct: 417 MCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSI 476
Query: 120 NMENALLLMYAKCKEMDEALRLFDEM 145
++ M + + EA L M
Sbjct: 477 EHYGCMVDMLGRAGRIAEAEDLIQNM 502
>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 166/452 (36%), Positives = 267/452 (59%), Gaps = 5/452 (1%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
+I N+LI Y + F A F+KMP RD+ SWN+++S Y+ + E L++F +++
Sbjct: 207 NISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKML 266
Query: 77 FE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135
E + D TL + SACA LEKL+ GK +H Y + E + NAL+ MYAK +
Sbjct: 267 NEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGV 326
Query: 136 DEALRLFDEMG--SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
+ A RL E S NI++ L++GY + V ARE+F+++ D+D+V W +M+ G V
Sbjct: 327 EIA-RLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYV 385
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ +ALELF+ M++EG P+ + ++LS SSL+ L++G+ +H ++ +
Sbjct: 386 QNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPS 445
Query: 254 VKTALIDMYSKCGSLEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
V ALI MY+K G++ A F K++V+WT+MI LA +GLG EA+ +F +M
Sbjct: 446 VTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSV 505
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
G+KP+ T+V VL+AC H GL+ +G + + M V+ ++PT+ H+ C++DL RAGLL +
Sbjct: 506 GMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQE 565
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432
A FI+ MP E I++ +LL++C + DL K A ++ + + AY+ L+N Y+
Sbjct: 566 AYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSA 625
Query: 433 EGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
G W A+ R+ MK+ RK+ G S I +K+
Sbjct: 626 CGKWENAAQTRKLMKDRGVRKEKGISWIHIKN 657
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 133/493 (26%), Positives = 224/493 (45%), Gaps = 76/493 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS---- 57
G+ +H + K L +Y+ N+L+ FY + A +FD+MP + SWNTL+S
Sbjct: 29 GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88
Query: 58 ---------------------------IYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
YN F + +F ++I E + + T+ +
Sbjct: 89 QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
S+CA + L G+ +H + K+GL + + +LL MYAKC + A +FD M + +N
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRM-TVKN 207
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
I + N LI+ Y+ +LA F+++ D+DIV W SM+ G + EAL +F KM++
Sbjct: 208 ISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLN 267
Query: 211 E-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
E + PD + S+LSAC++L L G+ +H +IL+ V ALI MY+K G +E
Sbjct: 268 EPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVE 327
Query: 270 ---------------------------------EALVTFYKTDCKDVVTWTTMIEGLANY 296
A F K +DVV WT MI G
Sbjct: 328 IARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQN 387
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF-RRMGGVYRVQPTIE 355
GL N+AL +F M +G +PN T ++L+ ++ G Q+ + P++
Sbjct: 388 GLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVT 447
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN---NM 412
+ L+ + ++ G + A+ + + + +S+ +++ A ++ LGK+ N M
Sbjct: 448 N--ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMAL---AQHGLGKEAINLFERM 502
Query: 413 MKLG-NQSHEAYV 424
+ +G H YV
Sbjct: 503 LSVGMKPDHITYV 515
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 133/271 (49%), Gaps = 33/271 (12%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ R++ G++VHC K GL + + N L+ YAK + A +FDEM +
Sbjct: 16 ILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEM-PLK 74
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+ S N LI+GY +++R + E+ D D V W +++ G + + A+ +F KMI
Sbjct: 75 STFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMI 134
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG--- 266
E V P + + +VLS+C++ L GR +H F+++ + V T+L++MY+KCG
Sbjct: 135 SERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPV 194
Query: 267 --------------SLEEALVTFY--------------KTDCKDVVTWTTMIEGLANYGL 298
S AL++ Y K +D+V+W +MI G + G
Sbjct: 195 IAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGY 254
Query: 299 GNEALRVFYQM-ERKGIKPNEATFVSVLAAC 328
EAL +F +M +KP+ T S+L+AC
Sbjct: 255 NLEALVIFSKMLNEPSLKPDNFTLASILSAC 285
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 142/325 (43%), Gaps = 66/325 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGR--------------------MALFTD---- 36
+GK +HA++ + ++ VGN+LI Y + + FT
Sbjct: 293 IGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDG 352
Query: 37 ---------ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87
AR +F+K+ RDV +W ++ Y + L LF+ ++ EG + TL
Sbjct: 353 YTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTL 412
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ S + L L +GK +H A K G ++ NAL+ MYAK ++ A R+FD
Sbjct: 413 AAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD---- 468
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
L NG K+IV W SM+ + +EA+ LF++
Sbjct: 469 ---------LPNG------------------KKEIVSWTSMIMALAQHGLGKEAINLFER 501
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA-LIDMYSKCG 266
M+ G+ PD V VLSAC+ + ++ GR + + + + + A +ID+Y + G
Sbjct: 502 MLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAG 561
Query: 267 SLEEALVTFYKTDCK-DVVTWTTMI 290
L+EA + + D + W +++
Sbjct: 562 LLQEAYLFIESMPIEPDNIAWGSLL 586
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 38/206 (18%)
Query: 212 GVTP-DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G +P E +L + + GR VH I++ + ++ L+ Y+K GSL
Sbjct: 4 GNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRF 63
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F + K +W T+I G A G + R+ Y+M + ++ +++
Sbjct: 64 AHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMP----DCDPVSWTAIIVGYNQ 119
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
GL +F +M RV P+ +F +
Sbjct: 120 FGLFDNAIWMFAKMIS-ERVPPS---------------------QF-----------TVS 146
Query: 391 ALLSACITYSEFDLGKKVANNMMKLG 416
+LS+C D+G+K+ + ++KLG
Sbjct: 147 NVLSSCAANQTLDIGRKIHSFVVKLG 172
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 162/472 (34%), Positives = 267/472 (56%), Gaps = 8/472 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + K+ D+Y+G++L+ Y + + A+ FD M R++ SWN+L++ Y
Sbjct: 169 IGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYE 228
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYML 119
+G+ L +F +++ GI D+ITL + SACA L + G +H K L
Sbjct: 229 QNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDL 288
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NAL+ MYAKC+ ++EA +FD M R++VS +++GY V AR +F +++
Sbjct: 289 VLGNALVDMYAKCRRVNEARLVFDRM-PLRDVVSETSMVSGYAKASSVKAARLMFSNMME 347
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+++V W +++ G + + EEA+ LF + E + P ++L+AC++L++L+ GR
Sbjct: 348 RNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQA 407
Query: 240 HRFILQNNI------TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
H IL++ D FV +LIDMY KCG +E+ + F + +D V+W MI G
Sbjct: 408 HTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGY 467
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A G G EAL +F +M G +P+ T + VL+AC H+GL+ EG F+ M + + P
Sbjct: 468 AQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPV 527
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
+H+ C+VDLL RAG L +A I+ MP E + + +LL+AC + LGK VA ++
Sbjct: 528 KDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLL 587
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
++ + YVLLSN YA G W +V R+ M+++ K+PG S I ++ +
Sbjct: 588 EIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQSH 639
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 121/458 (26%), Positives = 189/458 (41%), Gaps = 103/458 (22%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM-------------------- 44
+HA + KT S+I++ N L+ YG+ DAR +FD M
Sbjct: 41 VHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGA 100
Query: 45 -----------PFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSA 93
P RD SWN ++S + E L + E V ++ + SA
Sbjct: 101 LDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSA 160
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
CA L L G +H K + M +AL+ MY+KC+ + A R FD+M RNIVS
Sbjct: 161 CAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDM-DVRNIVS 219
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE-EALELFKKMIDEG 212
N LI C + P +ALE+F +M++ G
Sbjct: 220 WNSLIT--------------------------------CYEQNGPAGKALEVFVRMMNCG 247
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
+ PDE + SV SAC+SLS ++ G +H R + + D + AL+DMY+KC + EA
Sbjct: 248 IEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEA 307
Query: 272 LVTFYKTDCKD-------------------------------VVTWTTMIEGLANYGLGN 300
+ F + +D VV+W +I G G
Sbjct: 308 RLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENE 367
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM---GGVYRVQPTIEHF 357
EA+R+F ++R+ I P TF ++L AC + + G Q + G ++ + F
Sbjct: 368 EAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIF 427
Query: 358 V--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
V L+D+ + GL+ + M D +S+ A++
Sbjct: 428 VGNSLIDMYMKCGLVEDGRLVFERMLERDN-VSWNAMI 464
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 164/344 (47%), Gaps = 2/344 (0%)
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
L ++++ + D L C + + + + VH K + ++N L+ +Y
Sbjct: 6 LVRKVVGDLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYG 65
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
KC +++A ++FD M +RN S N ++ +D A +F + ++D W +M+
Sbjct: 66 KCGFLEDARKVFDHM-QQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVS 124
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
G + + EEAL M E +E S LSAC+ L +L G +H I ++ +
Sbjct: 125 GFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSL 184
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
D ++ +AL+DMYSKC + A F D +++V+W ++I G +AL VF +M
Sbjct: 185 DVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMM 244
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370
GI+P+E T SV +AC I EG Q+ R+ + + + LVD+ ++ +
Sbjct: 245 NCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRV 304
Query: 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+A MP D +S +++S S + + +NMM+
Sbjct: 305 NEARLVFDRMPLRD-VVSETSMVSGYAKASSVKAARLMFSNMME 347
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 261/462 (56%), Gaps = 19/462 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G + HV K L+ +V N+ IH + +AR +FD+ P RD+ SWN L++ Y
Sbjct: 99 LGHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYK 158
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + + ++K + EG+ D +T++ L S+CA L L+ GK + Y GL +
Sbjct: 159 KIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIP 218
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ M++KC ++ EA R+FD + +R IVS ++FD++ +K
Sbjct: 219 LANALMDMFSKCGDIHEARRIFDNL-EKRTIVS------------------KLFDDMEEK 259
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V+W +M+ G V+AK+ ++AL LF++M PDE M+ LSACS L L G +H
Sbjct: 260 DVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIH 319
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
R+I +++++ + + T+L+DMY+KCG++ EAL F+ ++ +T+T +I GLA +G +
Sbjct: 320 RYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDAS 379
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ F +M GI P+E TF+ +L+AC H G+I G F +M + + P ++H+ +
Sbjct: 380 TAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIM 439
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A++ ++ MP E + ALL C + LG+K A +++L
Sbjct: 440 VDLLGRAGLLEEADKLMESMPMEADAAVWGALLFGCRMHGNVKLGEKAAKKLLELDPSDS 499
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL Y W + ARR M E K PG S I++
Sbjct: 500 GIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEV 541
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 160/339 (47%), Gaps = 49/339 (14%)
Query: 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIV---ADKITLVILFSACARLEKLHYGKTVH 107
SWN + +++ + + ++ +KQ++ G D T +LF CA L G +
Sbjct: 45 SWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMIL 104
Query: 108 CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
+ K+ LE + ++ NA + M+A C EM+ A ++FDE R++VS N LINGY
Sbjct: 105 GHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDE-SPVRDLVSWNCLINGY------ 157
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227
K + E+A+E++K M EGV PD+ M+ ++S+C
Sbjct: 158 -------------------------KKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSC 192
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA-----------LVT-- 274
+ L +L G+ + ++ N + + AL+DM+SKCG + EA +V+
Sbjct: 193 AMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKL 252
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F + KDVV W MI G +AL +F +M+ P+E T + L+AC G +
Sbjct: 253 FDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGAL 312
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
G + R + + + + LVD+ ++ G + +A
Sbjct: 313 DVGIWIHRYIEK-HSLSLNVALGTSLVDMYAKCGNISEA 350
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 167/442 (37%), Positives = 251/442 (56%), Gaps = 8/442 (1%)
Query: 27 FYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKIT 86
+ R + +AR +FD RD +W ++S + E L +F + EG D+
Sbjct: 212 LFARRGMVEEARGVFDGAEHRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAV 271
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+V + +ACA+ + G+ H + GL +N++N L+ MY+ C+++ A RLFD G
Sbjct: 272 MVSVVAACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDN-G 330
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
+ S N +I+GY+ V+ A+ +FD + DKD V W +M+ GCV Q EAL +F
Sbjct: 331 ESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFD 390
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI--LQNNITQDAFVKTALIDMYSK 264
M + PD+ +VSV+SACS+LS L+ G+LVH +I Q NIT + T+LIDMY K
Sbjct: 391 SMRAHEIKPDDVTLVSVISACSNLSALEQGKLVHEYIRKYQYNIT--IVLGTSLIDMYMK 448
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK-PNEATFVS 323
CG +E AL F + K W +I GLA GL +L +F +ME G PNE TF
Sbjct: 449 CGCMEAALEVFDMLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMEATGTAVPNEITFTG 508
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
VL+ACRH GL+ EG Q F+ M Y++ P I H+ C+VDLL RAG + +AE+ I+ MP
Sbjct: 509 VLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYGCMVDLLGRAGYVREAEDMIQSMPMS 568
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY-VLLSNFYALEGHWTEVAEA 442
++ ALL AC + + ++G++V ++KL + H+ + +LSN YA EG W V +
Sbjct: 569 PDVPAWGALLGACWKHGDSEVGERVGKKLVKL-DPDHDGFQTMLSNIYASEGMWQCVKDL 627
Query: 443 RRNMKELQTRKKPGNSIIDLKH 464
R +MK+ K G S+++ H
Sbjct: 628 RGSMKQQHVAKVAGCSMVEPSH 649
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 154/360 (42%), Gaps = 64/360 (17%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D T +L +ACA + G VH ++ K G L + NAL+ MY+ C + A R+F
Sbjct: 105 DTYTHPLLAAACAARGDVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVF 164
Query: 143 DEMGSRRNIVSLNILINGYI---DME----------------------------LVDLAR 171
D G + VS N ++ Y+ D+E +V+ AR
Sbjct: 165 DA-GPVWDAVSWNTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEAR 223
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
VFD +D W +M+ + EAL +F M +EG DE VMVSV++AC+
Sbjct: 224 GVFDGAEHRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSG 283
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC-------------------------- 265
+Q G + H +++ + V+ LI MYS C
Sbjct: 284 VIQNGEVCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMIS 343
Query: 266 -----GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
G +E+A F KD V+W+ MI G + +EAL VF M IKP++ T
Sbjct: 344 GYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVT 403
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
VSV++AC + + +G +L Y+ TI L+D+ + G + A E ++
Sbjct: 404 LVSVISACSNLSALEQG-KLVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDML 462
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 131/314 (41%), Gaps = 39/314 (12%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D + NS+I Y + DA+ LFD MP +D SW+ +++ + S E L +F +
Sbjct: 334 DHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMR 393
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
I D +TLV + SAC+ L L GK VH Y K + + +L+ MY KC M+
Sbjct: 394 AHEIKPDDVTLVSVISACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCME 453
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
AL EVFD + +K W +++ G
Sbjct: 454 AAL--------------------------------EVFDMLEEKGTPCWNAVIVGLAMNG 481
Query: 197 QPEEALELFKKMIDEGVT-PDEEVMVSVLSACSSLSNLQYGRLVHRFILQN--NITQDAF 253
+L++F +M G P+E VLSAC ++ GR + ++QN I +
Sbjct: 482 LVTRSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFK-LMQNKYQIVPNIR 540
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTD-CKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
++D+ + G + EA DV W ++ +G RV ++ +
Sbjct: 541 HYGCMVDLLGRAGYVREAEDMIQSMPMSPDVPAWGALLGACWKHGDSEVGERVGKKLVK- 599
Query: 313 GIKPNEATFVSVLA 326
+ P+ F ++L+
Sbjct: 600 -LDPDHDGFQTMLS 612
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
++F + + +++ ++ P L+ M PD + +AC++
Sbjct: 64 QLFGLVRSPNAFTCNTLLKAALRQGFPHLCFPLYASM---PAAPDTYTHPLLAAACAARG 120
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
+++ G VH +++ + + +++ AL+ MYS CG + A F D V+W T++
Sbjct: 121 DVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSWNTILA 180
Query: 292 GLANYGLGNEALRVFYQMERK 312
G +A++VF +M +
Sbjct: 181 TYVRDGDVEQAVKVFTRMPER 201
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 162/461 (35%), Positives = 255/461 (55%), Gaps = 1/461 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+G HA + D +V +L+ Y DAR +FD M RDV SW ++ Y
Sbjct: 90 RGAHALAFRVGSLDDGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQT 149
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ E L+ F ++ G+++D++ L + SAC + L GK++H Y + ++
Sbjct: 150 RNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLS 209
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
+AL+ +YA C M+ A +L++ M R+++VS ++ GY ++AR +FD + +KD+
Sbjct: 210 SALINLYASCASMEMAEKLYNGM-PRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDV 268
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +M+ G + QP EAL LF M + G+ PDE M+SV+SAC++L +L + +H F
Sbjct: 269 VSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAF 328
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
I N + + + ALIDM++KCG + AL F + K+V+TWT+MI A +G G A
Sbjct: 329 IKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSA 388
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F QM +G++PNE TF+++L AC H+GL+ EG LF M Y ++P EH+ C+VD
Sbjct: 389 LCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVD 448
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL RA L+ +A I+ M + +LL+AC + + LG A +++L A
Sbjct: 449 LLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGA 508
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
VLLS Y + + E R MK K+ G S +DL
Sbjct: 509 SVLLSKIYMKSDNLNDAQEVRDVMKLQGVSKETGLSWMDLN 549
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 91/220 (41%), Gaps = 4/220 (1%)
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVL--SACSSLSNLQYGRLVHRFILQNNITQDA 252
A P L + G+ P + L SA + Y R H + D
Sbjct: 46 ATTPRLVLAACACLRRTGLPPPGPRALPALLRSAARCVGAGAYVRGAHALAFRVGSLDDG 105
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
FV+TAL+ Y+ CG + +A F +DVV+W M++ EAL F +M+
Sbjct: 106 FVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNS 165
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
G+ ++ +VL+AC H + G + M V + L++L + +
Sbjct: 166 GVLSDQLILATVLSACGHIRHLRTGKSIHSYM-LVSDILINAHLSSALINLYASCASMEM 224
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
AE+ MP +D +S A++ +F++ + + + M
Sbjct: 225 AEKLYNGMPRKD-LVSSTAMVFGYARNRKFEIARYIFDGM 263
>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 777
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 245/462 (53%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ + K L +++ G SL Y + A+ F ++ D+ SWN +++ +
Sbjct: 302 GRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALAN 361
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
SD E + F Q+I G++ D IT + L AC L+ G +H Y K+GL+ + +
Sbjct: 362 -SDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSYIIKMGLDKVAAV 420
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+LL MY KC + +A +F ++ N+VS
Sbjct: 421 CNSLLTMYTKCSNLHDAFNVFKDISENGNLVS---------------------------- 452
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
W +++ C + KQP EA LFK M+ PD + ++L C+ L +L+ G VH
Sbjct: 453 ---WNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHC 509
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F +++ + D V LIDMY+KCG L+ A F T D+V+W+++I G A +GLG E
Sbjct: 510 FSVKSGLVVDVSVSNRLIDMYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQE 569
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M G++PNE T++ VL+AC H GL+ EG L+ M + PT EH C+V
Sbjct: 570 ALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLVEEGWHLYNTMEIELGIPPTREHVSCMV 629
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL+RAG LY+AE FIK + +K LL++C T+ D+ ++ A N++KL +
Sbjct: 630 DLLARAGCLYEAENFIKKTGFDPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSA 689
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A VLLSN +A G+W EVA R MK++ +K PG S I++K
Sbjct: 690 ALVLLSNIHASAGNWKEVARLRNLMKQMGVQKVPGQSWIEVK 731
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 114/405 (28%), Positives = 193/405 (47%), Gaps = 43/405 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H H+ K+ D+ + N +++ YG+ DAR FD M R V SW ++S Y+
Sbjct: 99 GKRIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQ 158
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ +I++ Q++ G D++T + AC + G +H + K G ++ L
Sbjct: 159 NGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIA 218
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+NAL+ MY K ++ A +VF I KD
Sbjct: 219 QNALISMYTKFGQIAHA--------------------------------SDVFTMISTKD 246
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ W SM+ G + EAL LF+ M +GV P+E + SV SAC SL ++GR +
Sbjct: 247 LISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQ 306
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + ++ F +L DMY+K G L A FY+ + D+V+W +I LAN + N
Sbjct: 307 GMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALANSDV-N 365
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF--V 358
EA+ F QM G+ P++ TF+++L AC + +G Q+ Y ++ ++ V
Sbjct: 366 EAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHS-----YIIKMGLDKVAAV 420
Query: 359 C--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
C L+ + ++ L+ A K + +S+ A+LSAC + +
Sbjct: 421 CNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQ 465
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/432 (24%), Positives = 192/432 (44%), Gaps = 47/432 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH HV K+ D + N+LI Y + A +F + +D+ SW ++++ +
Sbjct: 199 LGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKDLISWASMITGFT 258
Query: 61 DFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L LF+ + +G+ ++ +FSAC L K +G+ + K GL
Sbjct: 259 QLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLG--- 315
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
RN+ + L + Y + A+ F +I
Sbjct: 316 -----------------------------RNVFAGCSLCDMYAKFGFLPSAKRAFYQIES 346
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W +++ + EA+ F +MI G+ PD+ +++L AC S L G +
Sbjct: 347 PDLVSWNAII-AALANSDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQI 405
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK-TDCKDVVTWTTMIEGLANYGL 298
H +I++ + + A V +L+ MY+KC +L +A F ++ ++V+W ++ + +
Sbjct: 406 HSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQ 465
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL--FRRMGGVYRVQPTIEH 356
EA R+F M KP+ T ++L C + G Q+ F G+ V ++ +
Sbjct: 466 PGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVKSGLV-VDVSVSN 524
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN--NMMK 414
L+D+ ++ GLL A D +S+ +L+ + Y++F LG++ N MM+
Sbjct: 525 R--LIDMYAKCGLLKHARYVFDSTQNPD-IVSWSSLI---VGYAQFGLGQEALNLFRMMR 578
Query: 415 -LGNQSHEAYVL 425
LG Q +E L
Sbjct: 579 NLGVQPNEVTYL 590
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 141/311 (45%), Gaps = 35/311 (11%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T V L AC + L YGK +H + K + L ++N +L MY KC + +A
Sbjct: 82 TYVNLILACTNVRSLKYGKRIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDA------- 134
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
R+ FD + + +V W M+ G + Q +A+ ++
Sbjct: 135 -------------------------RKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMY 169
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+M+ G PD+ S++ AC ++ G +H ++++ + ALI MY+K
Sbjct: 170 IQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKF 229
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNEATFVSV 324
G + A F KD+++W +MI G G EAL +F M R+G+ +PNE F SV
Sbjct: 230 GQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSV 289
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
+ACR S L E + + M + + + L D+ ++ G L A+ + + D
Sbjct: 290 FSACR-SLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPD 348
Query: 385 KFISYKALLSA 395
+S+ A+++A
Sbjct: 349 -LVSWNAIIAA 358
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 111/204 (54%), Gaps = 13/204 (6%)
Query: 194 KAKQPEEALELFK-KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252
K + EAL+ F + + + + V+++ AC+++ +L+YG+ +H IL++N D
Sbjct: 56 KQQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHDHILKSNCQPDL 115
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
++ +++MY KCGSL++A F + VV+WT MI G + G N+A+ ++ QM R
Sbjct: 116 VLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRS 175
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
G P++ TF S++ AC +G I G QL + ++ +H L+++ L+
Sbjct: 176 GYFPDQLTFGSIIKACCIAGDIDLGGQLHGHV-----IKSGYDH-----HLIAQNALISM 225
Query: 373 AEEFIKIMPAEDKF--ISYKALLS 394
+F +I A D F IS K L+S
Sbjct: 226 YTKFGQIAHASDVFTMISTKDLIS 249
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 5/184 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H K+ L D+ V N LI Y + L AR +FD D+ SW++L+ Y
Sbjct: 503 VGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYA 562
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT---KVGLEY 117
F E L LF+ + G+ +++T + + SAC+ + + G H Y T ++G+
Sbjct: 563 QFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLVEEG--WHLYNTMEIELGIPP 620
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ ++ + A+ + EA + G +I L+ VD+A + I
Sbjct: 621 TREHVSCMVDLLARAGCLYEAENFIKKTGFDPDITMWKTLLASCKTHGNVDIAERAAENI 680
Query: 178 VDKD 181
+ D
Sbjct: 681 LKLD 684
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 160/443 (36%), Positives = 253/443 (57%), Gaps = 1/443 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H HV K DI+V NSLI+ Y AR +F++M +DV SWN+L+ Y+
Sbjct: 959 GEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQ 1018
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ EVL LFK + E + ADK+T+V + SAC L + Y +E + +
Sbjct: 1019 HNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYL 1078
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L+ Y + ++ A ++F +M + N V+LN +I Y + A+++FD+I +KD
Sbjct: 1079 GNTLIDYYCRIGQLQSAEKVFSQMKDK-NTVTLNAMITAYAKGGNLVSAKKIFDQIPNKD 1137
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W SM+ +A ++LELF++M V PD V+ SVLSAC+ L L G+ +H
Sbjct: 1138 LISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHD 1197
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ +NNI D ++ +LIDM++KCG ++EAL F + KD ++W ++I GLAN G +E
Sbjct: 1198 YVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDE 1257
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F+ M +G +PNE TF+ VL AC + L+ EG F RM V+ ++P ++H+ C+V
Sbjct: 1258 ALDIFHSMLTEGPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVV 1317
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+LSRAG L +A FI MP + ++ LL AC T+ + + + +L +
Sbjct: 1318 DILSRAGQLEKAVSFISEMPLAPDPVVWRILLGACRTHGNVAVAEMATKKLSELDPGNSA 1377
Query: 422 AYVLLSNFYALEGHWTEVAEARR 444
+LLSN YA W++ RR
Sbjct: 1378 DSMLLSNIYASADRWSDAMNVRR 1400
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/406 (32%), Positives = 223/406 (54%), Gaps = 7/406 (1%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99
+FD+ P W + Y+ E L LFK + + D + ACA L
Sbjct: 440 VFDQSP----APWRAFLKAYSHGPFPLEALHLFKH-ARQHLADDTFVFTFVLKACAGLGW 494
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
G +H + G E+ + AL+ +Y + + EA ++FDEM +N+VS N++I
Sbjct: 495 HRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEM-PVKNVVSWNVMIT 553
Query: 160 GYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
G+ V+ AR +FD++ +++V W ++ G +A EAL L + M+ G++P E
Sbjct: 554 GFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEIT 613
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT- 278
+++V+ A S+L + G +++ + + I DA V +LID+Y+K GS++ +L F +
Sbjct: 614 VLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEML 673
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338
D +++V+WT++I G A +GL EAL +F +M R GIKPN TF+SV+ AC H GL+ +G
Sbjct: 674 DRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGL 733
Query: 339 QLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT 398
F+ M Y + P I+HF C++D+L RAG L +AE+ I+ +P E ++ LL C
Sbjct: 734 AFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSK 793
Query: 399 YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444
Y E +G++ + L +S + +LSN G +++ +AR+
Sbjct: 794 YGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARK 839
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/457 (23%), Positives = 198/457 (43%), Gaps = 70/457 (15%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG-RMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LHAH+ + L + Y + +I Y + A +F ++ WNTL+
Sbjct: 858 KKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRGLAQ 917
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ ++ +K+ +G+ D +T + ACA+ G+ +H + K+G + +
Sbjct: 918 SDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLLDIFV 977
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ +YA C + A +F+EM +++VS N LI GY
Sbjct: 978 SNSLIYLYAACGALACARSVFNEM-LVKDVVSWNSLIGGY-------------------- 1016
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
H +K E L LFK M E V D+ MV V+SAC+ L + + R
Sbjct: 1017 ------SQHNRLK-----EVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVR 1065
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEE-----------------ALVTFY-------- 276
+I N+I D ++ LID Y + G L+ A++T Y
Sbjct: 1066 YIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVS 1125
Query: 277 ------KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
+ KD+++W++MI + +++L +F QM+R +KP+ SVL+AC H
Sbjct: 1126 AKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAH 1185
Query: 331 SGLITEGCQL--FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
G + G + + R + + +E+ L+D+ ++ G + +A + M +D +S
Sbjct: 1186 LGALDLGKWIHDYVRRNNI-KADTIMEN--SLIDMFAKCGCVQEALQVFTDMEEKDT-LS 1241
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
+ +++ D + ++M+ G + +E L
Sbjct: 1242 WNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFL 1278
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 131/281 (46%), Gaps = 36/281 (12%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR+LFD+MP R+V SW L+ Y E L L + ++ GI +IT++ + A +
Sbjct: 564 ARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISN 623
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
L + G+ ++ Y K G+ + N+L+ +YAK + +L++FDEM RRN+VS
Sbjct: 624 LGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTS 683
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
+I+G+ MHG EALELF +M G+ P+
Sbjct: 684 IISGF--------------------------AMHGLSV-----EALELFAEMRRAGIKPN 712
Query: 217 EEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
+SV++ACS ++ G + + NI + +IDM + G L EA
Sbjct: 713 RITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQII 772
Query: 276 YKTDCK-DVVTWTTMIEGLANYG---LGNEALRVFYQMERK 312
+ +V W ++ + YG +G A+++ +ER+
Sbjct: 773 EGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERE 813
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 141/291 (48%), Gaps = 7/291 (2%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A +VF +I LW +++ G ++ P++A+ +KK ++G+ PD VL AC+
Sbjct: 893 AHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAK 952
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+ G +H +++ D FV +LI +Y+ CG+L A F + KDVV+W ++
Sbjct: 953 TCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSL 1012
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I G + + E L +F M+ + ++ ++ T V V++AC H G + + R + +
Sbjct: 1013 IGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNH- 1071
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
++ + L+D R G L AE+ M + ++ A+++A KK+
Sbjct: 1072 IEVDVYLGNTLIDYYCRIGQLQSAEKVFSQM-KDKNTVTLNAMITAYAKGGNLVSAKKIF 1130
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
+ ++ N+ ++ + Y+ H+++ E R M+ + + KP +I
Sbjct: 1131 D---QIPNKDLISWSSMICAYSQASHFSDSLELFRQMQ--RAKVKPDAVVI 1176
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/435 (22%), Positives = 185/435 (42%), Gaps = 65/435 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM-PFRDVGSWNTLMSIY 59
MG+ L+ + K + SD VGNSLI Y ++ ++ +FD+M R++ SW +++S +
Sbjct: 629 MGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGF 688
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
S E L LF ++ GI ++IT + + +AC+ H + GL +
Sbjct: 689 AMHGLSVEALELFAEMRRAGIKPNRITFLSVINACS-----------HGGLVEQGLAFFK 737
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+M + Y E+ + D +G + +I G + ME+
Sbjct: 738 SM----VYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEG-LPMEV------------- 779
Query: 180 KDIVLWRSMMHGCVKAKQ---PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
++ +WR ++ C K + E A+++ + E D V+ +VL+ S+ +
Sbjct: 780 -NVTVWRILLGCCSKYGEVAMGERAIKMISDLERES-GGDFAVLSNVLTELGRFSDAEQA 837
Query: 237 R--------------------LVHRFILQNNITQDAFVKTALIDMYSKCGS-LEEALVTF 275
R +H ++ + + + + +I +Y+ S L A F
Sbjct: 838 RKLLDQRKIVKLQEAVMEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVF 897
Query: 276 YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335
+ + W T++ GLA +A+ + + + KG+KP+ TF VL AC +
Sbjct: 898 KQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPK 957
Query: 336 EGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
EG Q+ V ++ ++ FV L+ L + G L A M +D +S+ +L+
Sbjct: 958 EGEQMHNH---VIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKD-VVSWNSLI 1013
Query: 394 SACITYSEFDLGKKV 408
YS+ + K+V
Sbjct: 1014 GG---YSQHNRLKEV 1025
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 32/193 (16%)
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
++ D+ WR+ + P EAL LFK + + D V VL AC+ L +
Sbjct: 439 KVFDQSPAPWRAFLKAYSHGPFPLEALHLFKHA-RQHLADDTFVFTFVLKACAGLGWHRA 497
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMY--SKC---------------------------- 265
G +H ++Q A+V TALI++Y S+C
Sbjct: 498 GAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAG 557
Query: 266 -GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
G +E A + F + C++VV+WT +I+G L EAL + M GI P+E T ++V
Sbjct: 558 WGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAV 617
Query: 325 LAACRHSGLITEG 337
+ A + G I G
Sbjct: 618 IPAISNLGGILMG 630
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM--SI 58
+GK +H +V + + +D + NSLI + + +A +F M +D SWN+++
Sbjct: 1191 LGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLA 1250
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-------KTVHCYAT 111
N F D E L +F ++ EG +++T + + ACA + + G K+VH
Sbjct: 1251 NNGFED--EALDIFHSMLTEGPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVH---- 1304
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
LE + ++ + ++ ++++A+ EM + V IL+
Sbjct: 1305 --NLEPQMKHYGCVVDILSRAGQLEKAVSFISEMPLAPDPVVWRILLGA 1351
>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 621
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 168/507 (33%), Positives = 273/507 (53%), Gaps = 45/507 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H HV + S ++VGN LI Y ++ DAR LFD+M R SWNT++S Y
Sbjct: 60 LGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDARHLFDRMSVRSYISWNTMVSAYA 119
Query: 61 DFSDSGEVLILFKQLIFEGIVADKIT---------------------------------- 86
D L +F+++ EG+ + +T
Sbjct: 120 FNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGE 179
Query: 87 -LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
L ++ S CA L K +H YA K G E +++AL+ +Y K +++ A LF EM
Sbjct: 180 ALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEM 239
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEI--------VDKDIVLWRSMMHGCVKAKQ 197
+++ S N LI + + L D A E+F ++ + ++V W +++ G +
Sbjct: 240 -KNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGR 298
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
+EALELF++M + + + +VLS C+ L+ L GR +H +++ + + V
Sbjct: 299 EKEALELFRRMQHAKILANAVTISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNG 358
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
L++MY+KCG L+E + F KT+ KD+++W +MI G +GLG AL F QM + G KP+
Sbjct: 359 LVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPD 418
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI 377
TFV+VL++C HSGL+ EG +LF +M YR++P +EH+ C+VDLL RAGLL +A E +
Sbjct: 419 GVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIV 478
Query: 378 KIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN-QSHEAYVLLSNFYALEGHW 436
K MP + ALL++C ++ ++ ++ A+++ L + ++ Y+LLSN YA G W
Sbjct: 479 KNMPVAPNACVWGALLNSCRMHNNTEIAEETASHLFNLSHRETTGTYMLLSNIYAASGRW 538
Query: 437 TEVAEARRNMKELQTRKKPGNSIIDLK 463
+ A R + K +K PG S I ++
Sbjct: 539 EDSARVRTSAKTKGLKKNPGQSWIKVE 565
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 144/274 (52%), Gaps = 9/274 (3%)
Query: 79 GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEA 138
G + D T ++ ACA + GKT+H + ++G + L++ N L+ MYAK M +A
Sbjct: 37 GTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDA 96
Query: 139 LRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF----DEIVDKDIVLWRSMMHGCVK 194
LFD M S R+ +S N +++ Y + A E+F E ++ ++V W S++ +
Sbjct: 97 RHLFDRM-SVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYAR 155
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+ EEA+ELF M +GV E + V+S C+ L +++H + ++ + +FV
Sbjct: 156 SGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFV 215
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG- 313
K+ALI +Y K G + A F + K + +W +I A GL +EAL +F Q+ER G
Sbjct: 216 KSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLERSGD 275
Query: 314 ---IKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
++PN ++ +++ G E +LFRRM
Sbjct: 276 CPRLRPNVVSWSAIIDGFASKGREKEALELFRRM 309
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
++M G D V+ AC+ + + G+ +H +L+ V LI MY+K
Sbjct: 31 RRMRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKL 90
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLA-NYGLGNEALRVFYQMERKGIKPNEATFVSV 324
G + +A F + + ++W TM+ A NY N AL +F +ME +G++PN T+ S+
Sbjct: 91 GRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDC-NGALEIFQRMESEGMEPNLVTWTSL 149
Query: 325 LAACRHSGLITEGCQLF--RRMGGV 347
+++ SG E +LF RM GV
Sbjct: 150 ISSYARSGWHEEAMELFGLMRMKGV 174
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 167/462 (36%), Positives = 261/462 (56%), Gaps = 1/462 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HA V K +S +YV N+LI+ YG A+ +FD+MP RD+ SWN+L+ Y
Sbjct: 96 GSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQ 155
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
EVL +F+ + G+ D +T+V + AC L + + Y + +E + +
Sbjct: 156 CKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYL 215
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L+ MY + + A +FD+M RN+VS N +I GY + ARE+FD + +D
Sbjct: 216 GNTLIDMYGRRGLVHLARGVFDQM-QWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRD 274
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W +M+ +A Q EAL LFK+M++ V PDE + SVLSAC+ +L G H
Sbjct: 275 VISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHD 334
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I + ++ D +V ALIDMY KCG +E+AL F + KD V+WT++I GLA G +
Sbjct: 335 YIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADS 394
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL F +M R+ ++P+ FV +L AC H+GL+ +G + F M VY ++P ++H+ C+V
Sbjct: 395 ALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVV 454
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLLSR+G L +A EFIK MP + ++ LLSA + L + +++L +
Sbjct: 455 DLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHGNIPLAEIATKKLLELDPSNSG 514
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVL SN YA W + + R M++ +K G+S I+++
Sbjct: 515 NYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSCIEME 556
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 111/420 (26%), Positives = 183/420 (43%), Gaps = 66/420 (15%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
A LF ++ + WN ++ ++ E + ++ + +G++ + +T + LF ACAR
Sbjct: 30 AHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACAR 89
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
+ + G T+H K+G E L + NAL+ MY C + A ++FDEM R
Sbjct: 90 VPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPER-------- 141
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
D+V W S++ G + K+ E L +F+ M GV D
Sbjct: 142 ------------------------DLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGD 177
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM--------------- 261
MV V+ AC+SL + +I +NN+ D ++ LIDM
Sbjct: 178 AVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFD 237
Query: 262 ----------------YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
Y K G+L A F +DV++WT MI + G EALR+
Sbjct: 238 QMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRL 297
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F +M +KP+E T SVL+AC H+G + G + Y V+ I L+D+
Sbjct: 298 FKEMMESKVKPDEITVASVLSACAHTGSLDVG-EAAHDYIQKYDVKADIYVGNALIDMYC 356
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK-LGNQSHEAYV 424
+ G++ +A E K M +D +S+ +++S D + M++ + SH A+V
Sbjct: 357 KCGVVEKALEVFKEMRKKDS-VSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFV 415
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 27/174 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G+ H ++ K + +DIYVGN+LI Y + + A +F +M +D SW +++S
Sbjct: 328 VGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLA 387
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N F+DS L F +++ E + V + ACA H GLEY
Sbjct: 388 VNGFADSA--LDYFSRMLREVVQPSHGAFVGILLACA-----------HAGLVDKGLEYF 434
Query: 119 LNMENALLL------------MYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
+ME L + ++ + A EM ++V IL++
Sbjct: 435 ESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSA 488
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 172/463 (37%), Positives = 255/463 (55%), Gaps = 3/463 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY-GRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K LHAH+ + L LI Y + AR+LFD + +NT+ +Y
Sbjct: 4 AKRLHAHLITSGLHQQENHLRKLITLYTSSSSSLHHARLLFDAVYHPSTYLYNTMFRVYA 63
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
L+L + + G D T L AC+ L L G+ +HC A K GL +
Sbjct: 64 ASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQELHCQALKFGLGGHVF 123
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+EN+L+ +Y MD A R+FD MG R+I S L+ Y + V+ AR+VFDE+ ++
Sbjct: 124 VENSLIHLYGSNSRMDSARRVFDGMG-YRDIASWTTLLACYANSCSVEAARKVFDEMPER 182
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V + +M+ V+ + EALELF+++ + P + ++SVL AC++L L GR V+
Sbjct: 183 SVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVY 242
Query: 241 RFILQNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
F+ + D+ + TALIDM+ KCGS+E AL+ F K V WT M+ GLA +GLG
Sbjct: 243 SFVCHSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLG 302
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+ + F +M GIKP+E TFV++L+ C HSGL+ EG F RM + V+PT+EHF C
Sbjct: 303 EQLIEAFEKMVDSGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGC 362
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL RAGL+ QA + I MP E + ALL+AC Y ++G+ A ++K +
Sbjct: 363 VVDLLGRAGLIDQAMQLISEMPFEPNAAIWGALLNACRVYKNVEVGELAAQWLIKDEPWN 422
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+ L + Y G W EV + + MKE+ RK PG S+I++
Sbjct: 423 GALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIEV 465
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 172/462 (37%), Positives = 247/462 (53%), Gaps = 36/462 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + K +IYV NSL+HFY F DA +FD+M RDV SW ++S Y
Sbjct: 53 GRQVHGVIIKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVR 112
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + LF ++ E + T V + AC R L GK +H + K L +
Sbjct: 113 AGLFDEAVGLFLRMDVE---PNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEV 169
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC + A ++VFDE+ +KD
Sbjct: 170 SNALMDMYVKCGCLPGA--------------------------------KQVFDELAEKD 197
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W S++ G V+ P+EALELF+ M G+ PD ++ SVLSAC+ L L YGR VH
Sbjct: 198 IVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHE 257
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I + I D + TA++DMY+KCG +E ++ F K+V+TW ++ GLA +G +
Sbjct: 258 HIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYK 317
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG-VYRVQPTIEHFVCL 360
L +F +M R G++PNE TF+++L AC H GL+ EG Q F M G Y + P +EH+ C+
Sbjct: 318 VLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCM 377
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RA LL +A E K MP ALLSAC +L +++ + ++L +
Sbjct: 378 VDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNTELPQEILDRFVELDSHDS 437
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN +A+ W +V RR MKE +K PG+++I+L
Sbjct: 438 GVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVIEL 479
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 172/375 (45%), Gaps = 37/375 (9%)
Query: 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYA 110
+N L+S Y +++++++ +G + D T + +CA+ + G+ VH
Sbjct: 1 PFNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVI 60
Query: 111 TKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLA 170
K+G + +EN+L+ Y+ CK +A R+FDEM R++VS +I+GY+ L D
Sbjct: 61 IKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEM-LVRDVVSWTGVISGYVRAGLFD-- 117
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230
EA+ LF +M V P+ VSVL AC
Sbjct: 118 -----------------------------EAVGLFLRM---DVEPNAATFVSVLVACGRK 145
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
L G+ +H ++ V AL+DMY KCG L A F + KD+V+WT++I
Sbjct: 146 GYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSII 205
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
GL EAL +F M+ GI+P+ SVL+AC G + G + + +
Sbjct: 206 SGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHI-DRKAI 264
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
+ I+ +VD+ ++ G + + + MP ++ +++ ALL+ + ++
Sbjct: 265 KWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKN-VLTWNALLNGLAMHGHAYKVLELFE 323
Query: 411 NMMKLGNQSHEAYVL 425
M+++G + +E L
Sbjct: 324 EMVRVGMRPNEVTFL 338
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 134/274 (48%), Gaps = 34/274 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GKG+H K+A + V N+L+ Y + A+ +FD++ +D+ SW +++S
Sbjct: 150 VGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLV 209
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L LF+ + GI D I L + SACARL L YG+ VH + + +++ +
Sbjct: 210 QCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQ 269
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ A++ MYAKC ++ ++++F+ M +N+++ N L+NG
Sbjct: 270 IGTAMVDMYAKCGCIEMSMQIFNGM-PHKNVLTWNALLNGL------------------- 309
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
MHG + LELF++M+ G+ P+E +++L+AC + GR
Sbjct: 310 -------AMHG-----HAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYF 357
Query: 241 RFI--LQNNITQDAFVKTALIDMYSKCGSLEEAL 272
++ Q N+ ++D+ + L+EAL
Sbjct: 358 NWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEAL 391
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 156/460 (33%), Positives = 260/460 (56%), Gaps = 33/460 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
HAH+ K LDSD +V NSLI Y LF A LFD +DV +W ++ +
Sbjct: 125 FHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGS 184
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLNMEN 123
+ E ++ F ++ G+ A+++T+V + A ++E + +G++VH + G ++ + + +
Sbjct: 185 ASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGS 244
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
+L+ MY KC D+A ++VFDE+ +++V
Sbjct: 245 SLVDMYGKCSCYDDA--------------------------------QKVFDEMPSRNVV 272
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W +++ G V+++ ++ + +F++M+ V P+E+ + SVLSAC+ + L GR VH ++
Sbjct: 273 TWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYM 332
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++N+I + T LID+Y KCG LEEA++ F + K+V TWT MI G A +G +A
Sbjct: 333 IKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAF 392
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
+FY M + PNE TF++VL+AC H GL+ EG +LF M G + ++P +H+ C+VDL
Sbjct: 393 DLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDL 452
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
R GLL +A+ I+ MP E + + AL +C+ + +++LGK A+ ++KL Y
Sbjct: 453 FGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRY 512
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
LL+N Y+ +W EVA R+ MK+ Q K PG S I++K
Sbjct: 513 TLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 138/275 (50%), Gaps = 40/275 (14%)
Query: 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +H +T + D+++G+SL+ YG+ + + DA+ +FD+MP R+V +W L++ Y
Sbjct: 223 GRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYV 282
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ +++F++++ + ++ TL + SACA + LH G+ VHCY K +E
Sbjct: 283 QSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTT 342
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
L+ +Y KC ++EA+ +F+ + +N+ + +ING+
Sbjct: 343 AGTTLIDLYVKCGCLEEAILVFERL-HEKNVYTWTAMINGF------------------- 382
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
HG + +A +LF M+ V+P+E ++VLSAC+ ++ GR
Sbjct: 383 -------AAHGYAR-----DAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGR--- 427
Query: 241 RFIL----QNNITQDAFVKTALIDMYSKCGSLEEA 271
R L + N+ A ++D++ + G LEEA
Sbjct: 428 RLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEA 462
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 248/459 (54%), Gaps = 32/459 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + ++ ++SD+ V N L++ Y + A LF++MP RDV SWN ++ Y+
Sbjct: 240 GKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSL 299
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E L F ++ GI + IT+V + ACA L L G+ +H YA + G E +
Sbjct: 300 NSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVV 359
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MYAKC V+ A ++F+ + K+
Sbjct: 360 GNALVNMYAKCGN--------------------------------VNSAYKLFERMPKKN 387
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G + P EAL LF +M +G+ PD +VSVL AC+ L+ G+ +H
Sbjct: 388 VVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHG 447
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ +++ + V T L+D+Y+KCG++ A F + +DVV+WTTMI +G G +
Sbjct: 448 YTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGED 507
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F +M+ G K + F ++L AC H+GL+ +G Q F+ M Y + P +EH+ CLV
Sbjct: 508 ALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLV 567
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +A IK M E + ALL AC + +LG++ A ++ +L +
Sbjct: 568 DLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAG 627
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
YVLLSN YA W +VA+ R+ MKE +K+PG S++
Sbjct: 628 YYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVV 666
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 201/398 (50%), Gaps = 42/398 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + +SD+ VG +L Y + +AR +FD+MP RDV SWN +++ Y+
Sbjct: 139 GRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQ 198
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF ++ GI + TLV + CA L L GK +HCYA + G+E + +
Sbjct: 199 NGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLV 258
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L+ MYAKC ++ A +LF+ M R D
Sbjct: 259 VNGLVNMYAKCGNVNTAHKLFERMPIR--------------------------------D 286
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W +++ G Q EAL F +M G+ P+ MVSVL AC+ L L+ G+ +H
Sbjct: 287 VASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHG 346
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ +++ + V AL++MY+KCG++ A F + K+VV W +I G + +G +E
Sbjct: 347 YAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHE 406
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC-- 359
AL +F +M+ +GIKP+ VSVL AC H + +G Q+ Y ++ E V
Sbjct: 407 ALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHG-----YTIRSGFESNVVVG 461
Query: 360 --LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
LVD+ ++ G + A++ + MP +D +S+ ++ A
Sbjct: 462 TGLVDIYAKCGNVNTAQKLFERMPEQD-VVSWTTMILA 498
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 160/333 (48%), Gaps = 42/333 (12%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
+ L L+ Q+ GI DK+ + + AC L G+ VH G E + + AL
Sbjct: 103 KALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALA 162
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
MY KC GS N AR+VFD + +D+V W
Sbjct: 163 SMYTKC-------------GSLEN-------------------ARQVFDRMPKRDVVSWN 190
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
+++ G + QP EAL LF +M G+ P+ +VSV+ C+ L L+ G+ +H + +++
Sbjct: 191 AIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS 250
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
I D V L++MY+KCG++ A F + +DV +W +I G + +EAL F
Sbjct: 251 GIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFF 310
Query: 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH----FVCLVD 362
+M+ +GIKPN T VSVL AC H + +G Q+ Y ++ E LV+
Sbjct: 311 NRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHG-----YAIRSGFESNDVVGNALVN 365
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ ++ G + A + + MP ++ +++ A++S
Sbjct: 366 MYAKCGNVNSAYKLFERMPKKN-VVAWNAIISG 397
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 10/222 (4%)
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+ + V+W+ + G VK +AL L+ +M G+ PD+ V +SV+ AC S S+LQ GR
Sbjct: 81 IRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGR 140
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH I+ D V TAL MY+KCGSLE A F + +DVV+W +I G + G
Sbjct: 141 KVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNG 200
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F +M+ GIKPN +T VSV+ C H + +G Q+ Y ++ IE
Sbjct: 201 QPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIH-----CYAIRSGIESD 255
Query: 358 VC----LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
V LV++ ++ G + A + + MP D S+ A++
Sbjct: 256 VLVVNGLVNMYAKCGNVNTAHKLFERMPIRD-VASWNAIIGG 296
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/461 (34%), Positives = 258/461 (55%), Gaps = 33/461 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH V K L SD+Y+ +L++ Y AR LF++M R+ W +++S Y
Sbjct: 97 VGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYM 156
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L+L+K++ +G D++T+ L SACA L+ L G +H + ++ ++
Sbjct: 157 KNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAV 216
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +AL+ MYAKC ++ A R+VFD++ DK
Sbjct: 217 LGSALVNMYAKCGDLKTA--------------------------------RQVFDQLSDK 244
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+ W +++ G VK + EAL+LF+++ + P+E +++V+SAC+ L +L+ GR V
Sbjct: 245 DVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWV 304
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I + + +LIDM+SKCG ++ A F KD+++W +M+ GLA +GLG
Sbjct: 305 HDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLG 364
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL F+ M+ ++P+E TF+ VL AC H+GL+ EG +LF + +Y V+ EH+ C
Sbjct: 365 REALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGC 424
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL RAGLL +A EFI++MP + + ++L AC Y+ +LG++ A +++L +
Sbjct: 425 MVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTN 484
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
Y+LLSN YA W EV + R M E +K PG S +
Sbjct: 485 DGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSV 525
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 173/370 (46%), Gaps = 51/370 (13%)
Query: 32 ALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGI-VADKITLVIL 90
++F RVL DV +WN+++ + + + L + +++ V D+ T L
Sbjct: 33 SVFAHTRVL-------DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSL 85
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
CA L + GK +H K L L +E LL MYA C ++ A LF+ MG R
Sbjct: 86 LKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNK 145
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+V W SM+ G +K P EAL L+KKM +
Sbjct: 146 VV--------------------------------WTSMISGYMKNHCPNEALLLYKKMEE 173
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
+G +PDE M +++SAC+ L +L G +H I + ++ A + +AL++MY+KCG L+
Sbjct: 174 DGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKT 233
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME-RKGIKPNEATFVSVLAACR 329
A F + KDV W+ +I G EAL++F ++ ++PNE T ++V++AC
Sbjct: 234 ARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACA 293
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIMPAEDK 385
G + G R Y + H V L+D+ S+ G + A+ M +D
Sbjct: 294 QLGDLETG-----RWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKD- 347
Query: 386 FISYKALLSA 395
IS+ ++++
Sbjct: 348 LISWNSMVNG 357
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 3/179 (1%)
Query: 153 SLNILINGYIDMEL--VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
SLN LI + M V A VF D++ W SM+ V + P AL+ + +M++
Sbjct: 12 SLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71
Query: 211 EGVT-PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
PD S+L C+ L + G+++H +++ + D +++T L++MY+ CG L+
Sbjct: 72 RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLK 131
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
A F + ++ V WT+MI G NEAL ++ +ME G P+E T ++++AC
Sbjct: 132 SARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSAC 190
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 163/488 (33%), Positives = 266/488 (54%), Gaps = 32/488 (6%)
Query: 5 LHAHVTKTALDSDI-YVGNSLIHFYGRMALFTDARVLFDKMPFRD--------------- 48
LHA +T L S V N LIH Y M L DAR FD++P +D
Sbjct: 126 LHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWG 185
Query: 49 ----------------VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFS 92
V SW +L++ Y+ + + F ++ +G+ D++ ++ S
Sbjct: 186 LLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALS 245
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
AC++L+ L G+ +H + + N+ AL+ MYAKC ++ +A +FD +G +
Sbjct: 246 ACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPE 305
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
N +I+GY + VD+AR +FD++ +D++ + SM+ G + + + +AL+LF +M G
Sbjct: 306 PWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHG 365
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ D +VS+L+AC+SL L +GR +H I Q + +D ++ TAL+DMY KCG ++EA
Sbjct: 366 MRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEAT 425
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F++ +DV TWT MI GLA G+G +AL F QM+R G +P T+++VL AC HS
Sbjct: 426 AVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSS 485
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392
L+ EG F M ++++ P +EH+ C++DLL+R+GLL +A ++ MP + + + ++
Sbjct: 486 LLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSI 545
Query: 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
LSAC + DL + A +++KL + YV L N Y W + R M+E +
Sbjct: 546 LSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGVK 605
Query: 453 KKPGNSII 460
K G S I
Sbjct: 606 KTAGYSSI 613
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 84/182 (46%), Gaps = 9/182 (4%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHA + + ++ D+Y+G +L+ Y + +A +F +M RDV +W +++
Sbjct: 389 GRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAF 448
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE-----KLHYGKTVHCYATKVGLE 116
+ L F Q+ +G +T + + +AC+ +LH+ + + +E
Sbjct: 449 NGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVE 508
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ ++ + A+ +DEA+ L M + N V +++ + +DLAR +
Sbjct: 509 HY----GCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEH 564
Query: 177 IV 178
++
Sbjct: 565 LL 566
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 81/207 (39%), Gaps = 33/207 (15%)
Query: 238 LVHRFILQNNITQDA-FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
++H L+ + A V LI MY+ G ++A F + KD V W T+I GL +
Sbjct: 125 MLHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRW 184
Query: 297 GLGNEALRVFYQMERK-------------------------------GIKPNEATFVSVL 325
GL +EA R+ Q + G+ P+E + L
Sbjct: 185 GLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGAL 244
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+AC + G L +G R++ T V L+D+ ++ G + QA+ + K
Sbjct: 245 SACSKLKNLDLGRLLHLLVGQ-KRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQK 303
Query: 386 FISYKALLSACITYSEFDLGKKVANNM 412
+ A++ D+ + + + M
Sbjct: 304 PEPWNAIIDGYCKLGHVDVARSLFDQM 330
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 169/463 (36%), Positives = 249/463 (53%), Gaps = 35/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H H TK SD Y N+L++ Y AR +FDKM + V SW T++ ++
Sbjct: 104 GKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQ 163
Query: 62 FSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E + LF +++ E + +++TLV + +ACAR L K +H Y
Sbjct: 164 WDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEY----------- 212
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
DE G R++V +L++ Y V LAR++FD+ +K
Sbjct: 213 ---------------------IDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEK 251
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ W M++G V+ EEAL LF++M +G+ D+ M S+L AC+ L L+ G+ +H
Sbjct: 252 NLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLH 311
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I + I D + TAL+DMY+KCGS+E A+ F++ KDV+TWT +I GLA G
Sbjct: 312 AYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAE 371
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL+ F +M KG+KP+ TFV VLAAC H+G + EG F M Y +QPTIEH+ L
Sbjct: 372 NALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGL 431
Query: 361 VDLLSRAGLLYQAEEFIKIMP-AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
VD+L RAG + +AEE IK MP A D+F+ LL AC + + ++ A ++++
Sbjct: 432 VDILGRAGRIAEAEELIKSMPMAPDQFV-LGGLLGACRIHGNLEAAERAAKQLLEIDPYH 490
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN Y W E R M E RK PG S I++
Sbjct: 491 SGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEV 533
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 126/276 (45%), Gaps = 41/276 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
M K +H ++ + + + L+ Y + AR LFDK +++ SWN +++ +
Sbjct: 205 MVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHV 264
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ S+ E L+LF+++ +GI DK+T+ L AC L L GK +H Y K ++ +
Sbjct: 265 EDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVA 324
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAKC ++ A+++F EM +K
Sbjct: 325 LGTALVDMYAKCGSIETAIQVFHEMP--------------------------------EK 352
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG---- 236
D++ W +++ G Q E AL+ F +M +GV PD V VL+ACS + G
Sbjct: 353 DVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHF 412
Query: 237 -RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
+ + +Q I L+D+ + G + EA
Sbjct: 413 NSMSDTYGIQPTIEHYG----GLVDILGRAGRIAEA 444
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 4/160 (2%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
AR VF +I + S++ GC +EAL +++M+ +G+ PD S+ +C +
Sbjct: 41 ARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRN 100
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
S G+ +H + D + + L++MYS CG L A F K + K VV+W TM
Sbjct: 101 SSE---GKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATM 157
Query: 290 IEGLANYGLGNEALRVFYQ-MERKGIKPNEATFVSVLAAC 328
I A + NEA+R+F + M+ + +KPNE T V+VL AC
Sbjct: 158 IGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTAC 197
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 9/184 (4%)
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYS--KCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
+ +H +L+ + D F + ++ S + GSL+ A + F + T ++I G
Sbjct: 5 KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
+ L EAL + +M +G+ P+ TF S+ +CR+S +EG Q+ + T
Sbjct: 65 DKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNS---SEGKQIHCHSTKLGFASDTY 121
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK-FISYKALLSACITYSEFDLGKKVANNMM 413
L+++ S G L A + M EDK +S+ ++ + + + ++ + MM
Sbjct: 122 AQNT-LMNMYSNCGCLVSARKVFDKM--EDKTVVSWATMIGVHAQWDQPNEAVRLFDRMM 178
Query: 414 KLGN 417
K N
Sbjct: 179 KSEN 182
>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 166/452 (36%), Positives = 266/452 (58%), Gaps = 5/452 (1%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
+I N+LI Y + F A F+KMP RD+ SWN+++S Y+ + E L +F +++
Sbjct: 207 NISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKML 266
Query: 77 FE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135
E + D TL + SACA LEKL+ GK +H Y + E + NAL+ MYAK +
Sbjct: 267 NEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGV 326
Query: 136 DEALRLFDEMG--SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
+ A RL E S NI++ L++GY + V ARE+F+++ D+D+V W +M+ G V
Sbjct: 327 EIA-RLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYV 385
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ +ALELF+ M++EG P+ + ++LS SSL+ L++G+ +H ++ +
Sbjct: 386 QNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPS 445
Query: 254 VKTALIDMYSKCGSLEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
V ALI MY+K G++ A F K++V+WT+MI LA +GLG EA+ +F +M
Sbjct: 446 VTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSV 505
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
G+KP+ T+V VL+AC H GL+ +G + + M V+ ++PT+ H+ C++DL RAGLL +
Sbjct: 506 GMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQE 565
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432
A FI+ MP E I++ +LL++C + DL K A ++ + + AY+ L+N Y+
Sbjct: 566 AYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSA 625
Query: 433 EGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
G W A+ R+ MK+ RK+ G S I +K+
Sbjct: 626 CGKWENAAQTRKLMKDRGVRKEKGISWIHIKN 657
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 133/493 (26%), Positives = 224/493 (45%), Gaps = 76/493 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS---- 57
G+ +H + K L +Y+ N+L+ FY + A +FD+MP + SWNTL+S
Sbjct: 29 GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88
Query: 58 ---------------------------IYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
YN F + +F ++I E + + T+ +
Sbjct: 89 QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
S+CA + L G+ +H + K+GL + + +LL MYAKC + A +FD M + +N
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRM-TVKN 207
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
I + N LI+ Y+ +LA F+++ D+DIV W SM+ G + EAL +F KM++
Sbjct: 208 ISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLN 267
Query: 211 E-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
E + PD + S+LSAC++L L G+ +H +IL+ V ALI MY+K G +E
Sbjct: 268 EPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVE 327
Query: 270 ---------------------------------EALVTFYKTDCKDVVTWTTMIEGLANY 296
A F K +DVV WT MI G
Sbjct: 328 IARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQN 387
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF-RRMGGVYRVQPTIE 355
GL N+AL +F M +G +PN T ++L+ ++ G Q+ + P++
Sbjct: 388 GLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVT 447
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN---NM 412
+ L+ + ++ G + A+ + + + +S+ +++ A ++ LGK+ N M
Sbjct: 448 N--ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMAL---AQHGLGKEAINLFERM 502
Query: 413 MKLG-NQSHEAYV 424
+ +G H YV
Sbjct: 503 LSVGMKPDHITYV 515
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 133/271 (49%), Gaps = 33/271 (12%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ R++ G++VHC K GL + + N L+ YAK + A +FDEM +
Sbjct: 16 ILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEM-PLK 74
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+ S N LI+GY +++R + E+ D D V W +++ G + + A+ +F KMI
Sbjct: 75 STFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMI 134
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG--- 266
E V P + + +VLS+C++ L GR +H F+++ + V T+L++MY+KCG
Sbjct: 135 SERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPV 194
Query: 267 --------------SLEEALVTFY--------------KTDCKDVVTWTTMIEGLANYGL 298
S AL++ Y K +D+V+W +MI G + G
Sbjct: 195 IAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGY 254
Query: 299 GNEALRVFYQM-ERKGIKPNEATFVSVLAAC 328
EAL +F +M +KP+ T S+L+AC
Sbjct: 255 NLEALAIFSKMLNEPSLKPDNFTLASILSAC 285
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 142/325 (43%), Gaps = 66/325 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGR--------------------MALFTD---- 36
+GK +HA++ + ++ VGN+LI Y + + FT
Sbjct: 293 IGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDG 352
Query: 37 ---------ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87
AR +F+K+ RDV +W ++ Y + L LF+ ++ EG + TL
Sbjct: 353 YTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTL 412
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ S + L L +GK +H A K G ++ NAL+ MYAK ++ A R+FD
Sbjct: 413 AAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD---- 468
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
L NG K+IV W SM+ + +EA+ LF++
Sbjct: 469 ---------LPNG------------------KKEIVSWTSMIMALAQHGLGKEAINLFER 501
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA-LIDMYSKCG 266
M+ G+ PD V VLSAC+ + ++ GR + + + + + A +ID+Y + G
Sbjct: 502 MLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAG 561
Query: 267 SLEEALVTFYKTDCK-DVVTWTTMI 290
L+EA + + D + W +++
Sbjct: 562 LLQEAYLFIESMPIEPDNIAWGSLL 586
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 38/206 (18%)
Query: 212 GVTP-DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G +P E +L + + GR VH I++ + ++ L+ Y+K GSL
Sbjct: 4 GNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRF 63
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F + K +W T+I G A G + R+ Y+M + ++ +++
Sbjct: 64 AHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMP----DCDPVSWTAIIVGYNQ 119
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
GL +F +M RV P+ +F +
Sbjct: 120 FGLFDNAIWMFAKMIS-ERVPPS---------------------QF-----------TVS 146
Query: 391 ALLSACITYSEFDLGKKVANNMMKLG 416
+LS+C D+G+K+ + ++KLG
Sbjct: 147 NVLSSCAANQTLDIGRKIHSFVVKLG 172
>gi|357116134|ref|XP_003559839.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Brachypodium distachyon]
Length = 601
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 165/460 (35%), Positives = 255/460 (55%), Gaps = 3/460 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HAHV L S +Y+ NSLI Y A +F +P DV S N ++S Y
Sbjct: 135 VGKQVHAHVLVNGLHSRVYLRNSLIKMYLDAGDAETAEAMFQSVPVPDVVSCNIMLSGYV 194
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG--LEYM 118
L LF+ + I D+ V L S C RL+ G++VH + +
Sbjct: 195 KGGCVVNALQLFRDMASREIGVDQYAAVALLSCCGRLKNALLGRSVHGVVVRRMDIKDRG 254
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L + NALL MYAKC EM+ A+R+F E + +I S N +I G+ + ++DLA + F +
Sbjct: 255 LILSNALLDMYAKCGEMNTAMRVFGEAKEKDDI-SWNTMIAGFANDGMLDLASKFFFDAP 313
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+D++ W +++ G + ++ +ELF M+ V PD+ V+++SA S L G+
Sbjct: 314 CRDLISWNTLLAGYGRCREFAAVMELFNDMLSSRVRPDKVTAVTLISAAVSKGALNLGKS 373
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH ++L+ + TQDAF+ + L+DMY KCG+++ A F K KDV WT MI GLA +G
Sbjct: 374 VHGWVLKEHGTQDAFLASTLVDMYCKCGNVKLAYAVFEKALDKDVTLWTAMISGLAFHGH 433
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G EAL +F+ M+ +G+ PN T V+VL+AC H+GL+ EGC++F M + ++P +EHF
Sbjct: 434 GTEALDLFWNMQNEGVAPNGVTLVTVLSACSHAGLLDEGCEIFYTMQKRFNIEPRVEHFG 493
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDLL+R+G L A ++MP + + ++LS + ++ + + +++L
Sbjct: 494 CMVDLLARSGRLSDAVGLARMMPMKPSRSIWGSILSVSSSCQNTEVAEIASKELLRLEPT 553
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNS 458
YVLLSN YA G W + R NM+ RK G S
Sbjct: 554 EEGGYVLLSNLYAAGGQWNYSNKVRENMEMRGVRKSAGAS 593
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSA--CSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
+ L+K M+ +PDE+ +S+L + C+S+ G+ VH +L N + +++ +LI
Sbjct: 105 VALYKSMLASSASPDEKTFLSLLKSVGCASV-----GKQVHAHVLVNGLHSRVYLRNSLI 159
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
MY G E A F DVV+ M+ G G AL++F M + I ++
Sbjct: 160 KMYLDAGDAETAEAMFQSVPVPDVVSCNIMLSGYVKGGCVVNALQLFRDMASREIGVDQY 219
Query: 320 TFVSVLAAC 328
V++L+ C
Sbjct: 220 AAVALLSCC 228
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 165/458 (36%), Positives = 261/458 (56%), Gaps = 1/458 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA V K DSD++V N+LIH Y AR +FD+M RD+ SWN+L+ Y
Sbjct: 817 VHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRR 876
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
EVL++F+++ + D +T+V + AC L + + Y + +E + + N
Sbjct: 877 YSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNT 936
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MY + +D A R+FD M R N+VS N +I GY + AR++FD++ +D++
Sbjct: 937 LIDMYGRRSMVDLARRVFDRMRDR-NMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVIS 995
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W SM+ +A Q +A+ LF++M+ V PDE + SVLSAC+ + L G VH +I
Sbjct: 996 WTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIR 1055
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ ++ D +V ALIDMY KCG++E+ L F + +D V+WT++I GLA G + AL
Sbjct: 1056 KYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALN 1115
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+F M R+G++P TFV VL AC H+G++ +G + F M VY + P ++H+ C+VDLL
Sbjct: 1116 LFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLL 1175
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
SR+G L +A EFIK MP + + ++ LLSA + L + +++ + Y+
Sbjct: 1176 SRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLLETDPSNSGNYI 1235
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
L SN YA W +V + RR M+E K +S +++
Sbjct: 1236 LSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVEI 1273
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 101/420 (24%), Positives = 175/420 (41%), Gaps = 67/420 (15%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
A LF ++P + WN ++ ++ + E + + + + + + +T L ACAR
Sbjct: 749 ANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACAR 808
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
+ + TVH K+G + L + NAL+ YA E+ A ++FDEM S R++VS N
Sbjct: 809 ISNVS-CTTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEM-SERDLVSWNS 866
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
LI GY + ++ E L +F++M V D
Sbjct: 867 LICGY-------------------------------GRCRRYSEVLVVFEEMRMADVKGD 895
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM--------------- 261
MV V+ AC+ L + +I +N + D ++ LIDM
Sbjct: 896 AVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFD 955
Query: 262 ----------------YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
Y K G+L A F +DV++WT+MI + G +A+R+
Sbjct: 956 RMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRL 1015
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F +M +KP+E T SVL+AC H G + G + + Y V I L+D+
Sbjct: 1016 FQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRK-YDVNADIYVGNALIDMYC 1074
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG-NQSHEAYV 424
+ G + + + M D +S+ ++++ D + + M++ G +H +V
Sbjct: 1075 KCGAVEKGLSVFEEMGKRDS-VSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFV 1133
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H ++ K +++DIYVGN+LI Y + +F++M RD SW ++++
Sbjct: 1046 VGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLA 1105
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L LF ++ EG+ T V + ACA H GLEY +
Sbjct: 1106 VNGSADSALNLFSLMLREGVRPTHGTFVGVLLACA-----------HAGVVDKGLEYFES 1154
Query: 121 ME 122
ME
Sbjct: 1155 ME 1156
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/498 (32%), Positives = 276/498 (55%), Gaps = 36/498 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI-- 58
+G+ +H+ V K L S + V NS+++ YG+ A +F++MP R V SWN ++S+
Sbjct: 182 VGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNT 241
Query: 59 -----------------------------YNDFSDSGEVLILFKQLIFEGIVA-DKITLV 88
YN + L LF +++ E +A D+ T+
Sbjct: 242 HLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTIT 301
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE-MGS 147
+ SACA L + GK VH Y + + Y + NAL+ YAK ++ A R+ D+ M +
Sbjct: 302 SVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMET 361
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
N++S L+ GY+ + ++ ARE+F + ++D+V W +M+ G + + +EA++LF+
Sbjct: 362 DLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRS 421
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
MI G P+ + +VLS C+SL+ L YG+ +H +++ + Q + V A+I MY++ GS
Sbjct: 422 MITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGS 481
Query: 268 LEEALVTFYKTDC--KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
A F + C K+ +TWT+MI LA +G G EA+ +F +M R G++P+ T+V VL
Sbjct: 482 FPWARRMFDQV-CWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVL 540
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+AC H+G + EG + + ++ +++ P + H+ C+VDLL+RAGL +A+EFI+ MP E
Sbjct: 541 SACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPD 600
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
I++ +LLSAC + +L + A ++ + + AY ++N Y+ G W++ A +
Sbjct: 601 AIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKA 660
Query: 446 MKELQTRKKPGNSIIDLK 463
KE RK+ G S ++
Sbjct: 661 RKEKAVRKETGFSWTHIR 678
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/435 (25%), Positives = 209/435 (48%), Gaps = 38/435 (8%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
+++ NSL+ + + DAR +F +MP RD SW ++ N GE + +
Sbjct: 97 NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+G + TL + S+CA + G+ VH + K+GL + + N++L MY KC + +
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE 216
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A +F+ M R++ S N +++ + +DLA +F+ + D+ IV W +M+ G +
Sbjct: 217 TATTVFERM-PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNG 275
Query: 197 QPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK 255
+AL+LF +M+ E + PDE + SVLSAC++L N++ G+ VH +IL+ + ++ V
Sbjct: 276 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVT 335
Query: 256 TALIDMYSKCGSLEEA-------------LVTFYK--------------------TDCKD 282
ALI Y+K GS+E A +++F + +D
Sbjct: 336 NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRD 395
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF- 341
VV WT MI G G +EA+ +F M G +PN T +VL+ C + G Q+
Sbjct: 396 VVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHC 455
Query: 342 RRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
R + + ++ + ++ + +R+G A + + I++ +++ A + +
Sbjct: 456 RAIRSLLEQSSSVSN--AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQ 513
Query: 402 FDLGKKVANNMMKLG 416
+ + M++ G
Sbjct: 514 GEEAVGLFEEMLRAG 528
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 158/360 (43%), Gaps = 45/360 (12%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE----MDEALRLFDEM 145
L C G+ +H A K GL + N LL Y + + +A RLFDE+
Sbjct: 32 LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91
Query: 146 G-SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
+RRN+ + N L++ + + AR VF E+ ++D V W M+ G +A + EA++
Sbjct: 92 PLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKT 151
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
M +G TP + + +VLS+C+ GR VH F+++ + V ++++MY K
Sbjct: 152 LLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGK 211
Query: 265 CGSLEEALVTFYKTDCKDV-------------------------------VTWTTMIEGL 293
CG E A F + + V V+W MI G
Sbjct: 212 CGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGY 271
Query: 294 ANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMGGVYR 349
GL +AL++F +M + P+E T SVL+AC + G + G Q+ R Y
Sbjct: 272 NQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYN 331
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFI-KIMPAEDKFISYKALLSACITYSEFDLGKKV 408
Q T L+ +++G + A + + M + IS+ ALL + + + +++
Sbjct: 332 SQVT----NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREM 387
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 167/461 (36%), Positives = 264/461 (57%), Gaps = 1/461 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ H V K S +++ NSLI YG A+ +FDKM RD+ SWN+L+ Y+
Sbjct: 176 GQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQ 235
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ EVL LF + + AD +T+V + AC+ L + ++ Y ++ + +
Sbjct: 236 CNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYL 295
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ MY + +D A R+FD M +NIVS N ++ GY + A+++F+E+ ++
Sbjct: 296 GNSLIDMYGRRGLVDLARRVFDRM-QEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRN 354
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W M+ GC +A Q +AL+LF++M+D V PDE + SVLSACS L L G+ VH
Sbjct: 355 VISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHE 414
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ +++I D +V ALIDMY KCG +++AL F+ KD V+WT+MI GLA G +
Sbjct: 415 YMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDN 474
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
+F QM R G++P +F+ +L AC H+GL+ +G + F M VY ++P ++H+ C+V
Sbjct: 475 VFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVV 534
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLLSR+G L +A EFIK MP + ++ LLSAC + L + + +++L +
Sbjct: 535 DLLSRSGELDRAYEFIKQMPVVPDVVLWRILLSACKLHRNLVLAEIATSKLLELDPSNSG 594
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA W + + R M +K S I++
Sbjct: 595 NYVLLSNTYAGSDRWDDASRMRDLMVVGDVQKPSSWSSIEV 635
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 103/424 (24%), Positives = 193/424 (45%), Gaps = 67/424 (15%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG-RMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K HAH+ +T + +++I Y + A F ++ + +N L+ +
Sbjct: 74 KEQHAHLIRTHHHKNPKSMSNVIKSYALSRSHLNKANFAFIQIGQPTLLIFNYLIRGLSQ 133
Query: 62 FSDSGEVLILFKQLIF-EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E ++++ L++ +GI+ D +T + LF AC+R++ + +G+ H K+G L
Sbjct: 134 SENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLF 193
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+EN+L+ MY E+ A ++FD+M R
Sbjct: 194 IENSLIRMYGYFGELGYAQKVFDKMDDR-------------------------------- 221
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W S++ G + + +E L+LF M + VT D MV V+ ACS L +
Sbjct: 222 DLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMV 281
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLE-----------------EALVTFYKT----- 278
++I ++ D ++ +LIDMY + G ++ A++T Y T
Sbjct: 282 KYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLV 341
Query: 279 ---------DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
++V++WT MI G A ++AL++F +M +KP+E T SVL+AC
Sbjct: 342 AAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACS 401
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
H GL+ G + M + ++ + L+D+ + G++ +A E M +D +S+
Sbjct: 402 HLGLLDTGQTVHEYMCR-HDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDS-VSW 459
Query: 390 KALL 393
+++
Sbjct: 460 TSMI 463
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 123/269 (45%), Gaps = 10/269 (3%)
Query: 149 RNIVSLNILINGY-IDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
+N S++ +I Y + ++ A F +I ++++ ++ G +++ P EA+ ++
Sbjct: 87 KNPKSMSNVIKSYALSRSHLNKANFAFIQIGQPTLLIFNYLIRGLSQSENPNEAIVMYSD 146
Query: 208 -MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
M ++G+ D + + ACS + ++ +G++ H +L+ F++ +LI MY G
Sbjct: 147 LMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFG 206
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
L A F K D +D+V+W ++I G + E L +F M + + T V V+
Sbjct: 207 ELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVIL 266
Query: 327 ACRH---SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
AC + G++ + V + L+D+ R GL+ A M E
Sbjct: 267 ACSYLCEDGVVDSMVKYIEDK----HVDIDVYLGNSLIDMYGRRGLVDLARRVFDRM-QE 321
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNM 412
+S+ A+L+ T + KK+ N M
Sbjct: 322 KNIVSWNAMLTGYATAGDLVAAKKLFNEM 350
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/498 (32%), Positives = 276/498 (55%), Gaps = 36/498 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI-- 58
+G+ +H+ V K L S + V NS+++ YG+ A +F++MP R V SWN ++S+
Sbjct: 76 VGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNT 135
Query: 59 -----------------------------YNDFSDSGEVLILFKQLIFEGIVA-DKITLV 88
YN + L LF +++ E +A D+ T+
Sbjct: 136 HLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTIT 195
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE-MGS 147
+ SACA L + GK VH Y + + Y + NAL+ YAK ++ A R+ D+ M +
Sbjct: 196 SVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMET 255
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
N++S L+ GY+ + ++ ARE+F + ++D+V W +M+ G + + +EA++LF+
Sbjct: 256 DLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRS 315
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
MI G P+ + +VLS C+SL+ L YG+ +H +++ + Q + V A+I MY++ GS
Sbjct: 316 MITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGS 375
Query: 268 LEEALVTFYKTDC--KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
A F + C K+ +TWT+MI LA +G G EA+ +F +M R G++P+ T+V VL
Sbjct: 376 FPWARRMFDQV-CWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVL 434
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+AC H+G + EG + + ++ +++ P + H+ C+VDLL+RAGL +A+EFI+ MP E
Sbjct: 435 SACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPD 494
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
I++ +LLSAC + +L + A ++ + + AY ++N Y+ G W++ A +
Sbjct: 495 AIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKA 554
Query: 446 MKELQTRKKPGNSIIDLK 463
KE RK+ G S ++
Sbjct: 555 RKEKAVRKETGFSWTHIR 572
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/423 (26%), Positives = 204/423 (48%), Gaps = 41/423 (9%)
Query: 29 GRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLV 88
GR+A DAR +F +MP RD SW ++ N GE + + +G + TL
Sbjct: 6 GRLA---DARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLT 62
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ S+CA + G+ VH + K+GL + + N++L MY KC + + A +F+ M
Sbjct: 63 NVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM-PV 121
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
R++ S N +++ + +DLA +F+ + D+ IV W +M+ G + +AL+LF +M
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181
Query: 209 IDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
+ E + PDE + SVLSAC++L N++ G+ VH +IL+ + ++ V ALI Y+K GS
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGS 241
Query: 268 LEEA-------------LVTFYK--------------------TDCKDVVTWTTMIEGLA 294
+E A +++F + +DVV WT MI G
Sbjct: 242 VENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYE 301
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF-RRMGGVYRVQPT 353
G +EA+ +F M G +PN T +VL+ C + G Q+ R + + +
Sbjct: 302 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSS 361
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
+ + ++ + +R+G A + + I++ +++ A + + + + M+
Sbjct: 362 VSN--AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML 419
Query: 414 KLG 416
+ G
Sbjct: 420 RAG 422
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 6/154 (3%)
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
M++K G L +A F + +D V+WT M+ GL G EA++ M G P + T
Sbjct: 1 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60
Query: 321 FVSVLAAC--RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
+VL++C +G + F G+ P ++++ + G A +
Sbjct: 61 LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANS---VLNMYGKCGDSETATTVFE 117
Query: 379 IMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
MP S+ A++S DL + + +M
Sbjct: 118 RMPVR-SVSSWNAMVSLNTHLGRMDLAESLFESM 150
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 159/437 (36%), Positives = 246/437 (56%), Gaps = 1/437 (0%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
H + + D +VG +L+ Y DAR +FD MP RD+ +W ++ Y +
Sbjct: 92 HGLAFRVGAEVDGFVGTALVRAYAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNY 151
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
E L+LF + +V D++ + + S CA L +GK +H Y + AL
Sbjct: 152 EEALLLFHSMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCAL 211
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+ MYA C +M+ A +L++ + S + IV ++ GY V++A +F+ + KD+V W
Sbjct: 212 MNMYASCADMEMAEKLYNRV-SEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSW 270
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+M+ G ++ +P EAL LF M GV PDE M+SV+SAC+++ L+ R +H F+
Sbjct: 271 SAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVEN 330
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
+++ + + ALIDM+SKCGSL AL F K+VVTWT++I A +G G AL +
Sbjct: 331 HSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTL 390
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F M+ +GI+PN TF+ +L AC H+GL+ EG LF+ M YR++P EH+ C+VDLL
Sbjct: 391 FENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLG 450
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
RA LL QA + I+ M + + +LL+AC + + +LG A +++L A VL
Sbjct: 451 RAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLELGTFAAKKILELDPNHGGAQVL 510
Query: 426 LSNFYALEGHWTEVAEA 442
LSN YA G+W +V E
Sbjct: 511 LSNIYAEYGNWNDVKEG 527
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 158/368 (42%), Gaps = 69/368 (18%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
L L A A L H A +VG E + AL+ YA C +++A R+FD M
Sbjct: 71 ALPSLLRAIAFARSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARRVFDGM 130
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
D+D+V W M+ +A+ EEAL LF
Sbjct: 131 --------------------------------PDRDLVAWGVMLDCYCQARNYEEALLLF 158
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
M V PD+ ++ +VLS C+ NL++G+ +H ++L ++ DA V AL++MY+ C
Sbjct: 159 HSMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASC 218
Query: 266 -------------------------------GSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
G +E A F KDVV+W+ MI G A
Sbjct: 219 ADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYA 278
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG--CQLFRRMGGVYRVQP 352
EAL +F+ M+R G+KP+E T +SV++AC + G + + F + ++ P
Sbjct: 279 ESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILP 338
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
L+D+ S+ G L A + MP + +++ ++++A + + + NM
Sbjct: 339 IGN---ALIDMFSKCGSLTLALDVFNAMP-QKNVVTWTSIITASAMHGDGRSALTLFENM 394
Query: 413 MKLGNQSH 420
G Q +
Sbjct: 395 KSEGIQPN 402
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 118/276 (42%), Gaps = 63/276 (22%)
Query: 2 GKGLHAH--VTKTALDS-----------------------------DIYVGNSLIHFYGR 30
GK +H++ V+ T +D+ +I + ++++ Y +
Sbjct: 189 GKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAK 248
Query: 31 MALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
A +F+ MP +DV SW+ +++ Y + S E L LF + G+ D+IT++ +
Sbjct: 249 NGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSV 308
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA + L + +H + + +L + NAL+ M++KC + AL
Sbjct: 309 ISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLAL----------- 357
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+VF+ + K++V W S++ AL LF+ M
Sbjct: 358 ---------------------DVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKS 396
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
EG+ P+ + +L AC ++ GRL+ + ++Q
Sbjct: 397 EGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQ 432
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%)
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
P + S+L A + +L H + D FV TAL+ Y+ CG +E+A
Sbjct: 66 APGRRALPSLLRAIAFARSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARR 125
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
F +D+V W M++ EAL +F+ M+R + P++ +VL+ C H+
Sbjct: 126 VFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATVLSTCAHT 183
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 4/170 (2%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H+ V ++ + +GN+LI + + T A +F+ MP ++V +W ++++ D
Sbjct: 324 IHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGD 383
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLNMEN 123
L LF+ + EGI + +T + L AC + G+ + + +E M
Sbjct: 384 GRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYG 443
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLA 170
++ + + K + +A L M R N+V L+ + D+EL A
Sbjct: 444 CMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLELGTFA 493
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 165/461 (35%), Positives = 256/461 (55%), Gaps = 1/461 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH K A SD +V L+ Y AR +FD+M RDV +WNT++ Y
Sbjct: 133 GMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCR 192
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
F E LF+++ ++ D++ L + SAC R + Y + ++ + + + ++
Sbjct: 193 FGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHL 252
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYA MD A+ F +M S RN+ +++GY +D AR +FD+ KD
Sbjct: 253 LTALVTMYAGAGCMDMAMEFFRKM-SVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKD 311
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ ++ P+EAL +F++M G+ PD M+SV+SAC +L L + VHR
Sbjct: 312 LVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHR 371
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ N + + ALI+MY+KCG L+ A F K ++VV+W++MI A +G ++
Sbjct: 372 YTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASD 431
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
+L +F QM+++ ++PNE TFV VL C HSGL+ EG ++F M Y + P IEH+ C+V
Sbjct: 432 SLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMV 491
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL RA LL +A E I+ MP + + +L+SAC + E +LG+ A ++KL
Sbjct: 492 DLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDG 551
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A VL+SN YA E W V R M++ + K+ G S IDL
Sbjct: 552 ALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDL 592
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 122/436 (27%), Positives = 204/436 (46%), Gaps = 76/436 (17%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM-PFRDVGSWNTLMSIYND 61
K LHAH+ +T ++ + + F + A LF + P + +N+L+ D
Sbjct: 32 KQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYALNLFSSISPLPESIVFNSLL---RD 88
Query: 62 FSDSGE--VLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
S SGE ILF Q I G D+I+ + A +++ L G +H +A K+
Sbjct: 89 LSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGFAFKIATLSD 148
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+E L+ MYA C ++ A +FDEM S+R++V+ N +I Y L+D
Sbjct: 149 PFVETGLMDMYAACGRINYARNVFDEM-SQRDVVTWNTMIERYCRFGLLD---------- 197
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
EA +LF++M D V PDE ++ +++SAC N++Y R
Sbjct: 198 ---------------------EAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRA 236
Query: 239 VHRFILQNNITQDA-------------------------------FVKTALIDMYSKCGS 267
++ F+++N++ D FV TA++ YSK G
Sbjct: 237 IYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGR 296
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
L++A V F +T+ KD+V WTTMI A EALRVF +M GIKP+ T +SV++A
Sbjct: 297 LDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISA 356
Query: 328 CRHSGLITEGCQLFR--RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
C + G + + + R + G+ V P L+++ ++ G L A + + MP +
Sbjct: 357 CVNLGTLDKAKWVHRYTHLNGLESVLPIDN---ALINMYAKCGGLDAARDVFEKMPTRN- 412
Query: 386 FISYKALLSACITYSE 401
+S+ ++++A + E
Sbjct: 413 VVSWSSMINAFAMHGE 428
>gi|242038163|ref|XP_002466476.1| hypothetical protein SORBIDRAFT_01g008465 [Sorghum bicolor]
gi|241920330|gb|EER93474.1| hypothetical protein SORBIDRAFT_01g008465 [Sorghum bicolor]
Length = 599
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 158/456 (34%), Positives = 257/456 (56%), Gaps = 5/456 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HAHV + S +Y+ NSLI Y A ++F D S N ++S Y +
Sbjct: 143 GRQVHAHVVVSGFHSRVYLRNSLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVN 202
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK---VGLEYM 118
S + L F+ + GIVAD+ T V L + C RL+ + G++VH + G ++
Sbjct: 203 EGCSLKALCFFRDMASRGIVADRYTAVALLTCCGRLKTVLLGRSVHGVIVRRMDAGDNWL 262
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + NALL MYAKC M+ A R+F E S ++ +S N +++G+ + ++DLA F E
Sbjct: 263 I-LVNALLDMYAKCGRMNAAERVFGE-ASEKDGISWNTMVSGFANAGMLDLASRFFSEAP 320
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+D++ W +++ G + K E ++LF M+ V PD+ V+++S + +L + +
Sbjct: 321 SRDLISWNALLAGYARYKGFNEVMKLFHDMLASCVNPDKVTAVTLISVAAGKGSLNHAKS 380
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++++ QDAF+ +AL+DM+ KCG+++ A F K KDV WT MI GLA G
Sbjct: 381 IHGWVVKQFGHQDAFLASALVDMHCKCGNVKVAYYVFEKALDKDVTLWTAMISGLAFNGH 440
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G EAL +F++M+ + I PN T ++VL+AC H+GL+ EGC++ M Y ++P IEHF
Sbjct: 441 GTEALELFWKMQTEAIAPNGVTLLAVLSACSHAGLLDEGCRILDAMKQKYSIEPGIEHFG 500
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDLL+R+G L A + MP + ++L+A + ++ + + +++L +
Sbjct: 501 CMVDLLARSGKLIDALALARRMPMRPSRSIWGSILNASLAGQNTEVAEIASKELLRLDPE 560
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK 454
YVLLSN YA GHW E R+NMK +K
Sbjct: 561 DEGGYVLLSNLYAAGGHWNHSDEVRQNMKRKGVKKS 596
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 143/321 (44%), Gaps = 46/321 (14%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMA---LFTDARVLFDKM-PFRDVGSWNTLMSI 58
+ + AH+ + L + + + L+HF ++ L +A +LF P ++ +N ++S
Sbjct: 37 RAILAHLLRLGLALETFPMSRLLHFATAVSSPRLTREAELLFHHFTPRPNLYIYNLMLSA 96
Query: 59 YNDFSD-----SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV 113
+ + +++ ++ ++ D+ T + L + +E+L G+ VH +
Sbjct: 97 SAASAARDSSSPPQAAAVYRSMLASSVLPDEQTFLALLRS---VERLSAGRQVHAHVVVS 153
Query: 114 GLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
G + + N+L+ MY +++ A +F + VS NI+++GY++
Sbjct: 154 GFHSRVYLRNSLIKMYIDAGDVETAELMFRS-ALVLDTVSCNIMLSGYVN---------- 202
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
GC +AL F+ M G+ D V++L+ C L +
Sbjct: 203 ----------------EGC-----SLKALCFFRDMASRGIVADRYTAVALLTCCGRLKTV 241
Query: 234 QYGRLVHRFILQNNITQDAF--VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
GR VH I++ D + + AL+DMY+KCG + A F + KD ++W TM+
Sbjct: 242 LLGRSVHGVIVRRMDAGDNWLILVNALLDMYAKCGRMNAAERVFGEASEKDGISWNTMVS 301
Query: 292 GLANYGLGNEALRVFYQMERK 312
G AN G+ + A R F + +
Sbjct: 302 GFANAGMLDLASRFFSEAPSR 322
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 104/251 (41%), Gaps = 42/251 (16%)
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
P +A +++ M+ V PDE+ +++L S+ L GR VH ++ + +++ +
Sbjct: 108 PPQAAAVYRSMLASSVLPDEQTFLALLR---SVERLSAGRQVHAHVVVSGFHSRVYLRNS 164
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LI MY G +E A + F D V+ M+ G N G +AL F M +GI +
Sbjct: 165 LIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCSLKALCFFRDMASRGIVAD 224
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL------------- 364
T V++L C + G + G + R ++++ LV+ L
Sbjct: 225 RYTAVALLTCCGRLKTVLLGRSVH---GVIVRRMDAGDNWLILVNALLDMYAKCGRMNAA 281
Query: 365 ----------------------SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
+ AG+L A F P+ D IS+ ALL+ Y F
Sbjct: 282 ERVFGEASEKDGISWNTMVSGFANAGMLDLASRFFSEAPSRD-LISWNALLAGYARYKGF 340
Query: 403 DLGKKVANNMM 413
+ K+ ++M+
Sbjct: 341 NEVMKLFHDML 351
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 177/478 (37%), Positives = 280/478 (58%), Gaps = 19/478 (3%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIY 59
K LHA + KTA D L+ F ++ D AR +F M + S+NTL+
Sbjct: 28 KQLHAQMIKTAQIRDPLAAAELLRFSA-VSDHRDLDYARKIFRSMHRPNCFSYNTLIRAL 86
Query: 60 NDFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
++ +D + L++F +++ + + + T +F AC R E+L G+ VH A K GL+
Sbjct: 87 SESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSD 146
Query: 119 LNMENALLLMYAKCKEMDEALRLF---------DEMGSRR-----NIVSLNILINGYIDM 164
+ + ++ MY C M++A RLF D + ++ ++V N++I+GY+ +
Sbjct: 147 EFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRI 206
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
+++AR +FDE+ + +V W M+ G ++ +EA+E+F++M V P+ +VSVL
Sbjct: 207 GELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVL 266
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
A S L L+ G+ VH + ++NNI D + +ALIDMY+KCGS+E+AL F ++VV
Sbjct: 267 PAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVV 326
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
TW+T+I GLA +G + L F MER G+ P++ T++ +L+AC H+GL+ EG F M
Sbjct: 327 TWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHM 386
Query: 345 GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDL 404
V ++P IEH+ C+VDLL RAGLL ++EE I MP + + +KALL AC + ++
Sbjct: 387 VRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEM 446
Query: 405 GKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
GK+VA ++M+L +YV LSN YA G+W VA+ R MKE+ RK PG S I+L
Sbjct: 447 GKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIEL 504
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 165/498 (33%), Positives = 271/498 (54%), Gaps = 34/498 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H+ V K + V NSL++ Y + A+V+FD+M +D +WNT++S++
Sbjct: 163 VGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHM 222
Query: 61 DFSDSGEVLILFKQLIFEGIVA--------------------------------DKITLV 88
F L LF Q+ IV+ DK TL
Sbjct: 223 QFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLG 282
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ SACA E L GK +H + + ++ + NAL+ MYAK ++ A R+ + G+
Sbjct: 283 SVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTP 342
Query: 149 R-NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
N+++ L++GY + +D AR +FD + +D+V W +M+ G + +AL LF+
Sbjct: 343 SLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRL 402
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
MI EG P+ + +VLS SSL++L +G+ +H ++ V ALI MYS+ GS
Sbjct: 403 MIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGS 462
Query: 268 LEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+++A F + +D +TWT+MI LA +GLGNEA+ +F +M R +KP+ T+V VL+
Sbjct: 463 IKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLS 522
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC H GL+ +G F M V+ ++PT H+ C++DLL RAGLL +A FI+ MP E
Sbjct: 523 ACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDV 582
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
+++ +LLS+C + DL K A ++ + + AY+ L+N + G W + A+ R++M
Sbjct: 583 VAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSM 642
Query: 447 KELQTRKKPGNSIIDLKH 464
K+ +K+ G S + +K+
Sbjct: 643 KDKAVKKEQGFSWVQIKN 660
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 145/549 (26%), Positives = 234/549 (42%), Gaps = 105/549 (19%)
Query: 1 MGKGLHAHVTKTALDS-DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS-- 57
+G+ +HA + K L +++ N+L++ Y + +DA LFD+MP + SWNT++S
Sbjct: 30 IGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAH 89
Query: 58 -----------IYNDFSDSGEV-----------LILFK-------QLIFEGIVADKITLV 88
++++ V L LFK +++ GI + T
Sbjct: 90 AKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFT 149
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ ++CA + L GK VH + K+G ++ + N+LL MYAKC + A +FD M
Sbjct: 150 NVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRM-RL 208
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
++ + N +I+ ++ DLA +FD++ D DIV W S++ G ALE F M
Sbjct: 209 KDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFM 268
Query: 209 I-DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
+ + PD+ + SVLSAC++ +L+ G+ +H I++ ++ V ALI MY+K G+
Sbjct: 269 LKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGA 328
Query: 268 LE---------------------------------EALVTFYKTDCKDVVTWTTMIEGLA 294
+E A F +DVV WT MI G A
Sbjct: 329 VEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYA 388
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL-------------- 340
GL ++AL +F M R+G KPN T +VL+ + G QL
Sbjct: 389 QNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVS 448
Query: 341 --------FRRMGGVYRVQPTIEHFVCLVDLLS---------RAGLLYQA----EEFIKI 379
+ R G + + H D L+ + GL +A E+ ++I
Sbjct: 449 VGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRI 508
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN--QSHEAYVLLSNFYALEGHWT 437
D I+Y +LSAC + GK N M + N + Y + + G
Sbjct: 509 NLKPDH-ITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLE 567
Query: 438 EVAEARRNM 446
E RNM
Sbjct: 568 EAYNFIRNM 576
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 165/463 (35%), Positives = 262/463 (56%), Gaps = 2/463 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ + A++ + L + + N+L+ Y + A+ LFD+ R++ +NT++S Y
Sbjct: 250 MGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYA 309
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L + +++ +G D++T++ SA A+L L YGK H Y + GLE +
Sbjct: 310 RQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDS 369
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N ++ MY KC + + A R+FD M S + +VS N L G+I V+ A EVF++I ++
Sbjct: 370 IGNVIIDMYMKCGKPEMACRVFDLM-SNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPER 428
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ V W +M+ G V+ E+A+ELF++M EG+ D M+ + SAC L + + VH
Sbjct: 429 NAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVH 488
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I +N I D + TAL+DM+++CG + A+ F K +DV WT I +A G G
Sbjct: 489 TYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGE 548
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A +F QM +G+KP+ FV VL AC H G + +G +F M + + P IEH+ C+
Sbjct: 549 GATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCM 607
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A + IK MP E + + +LL+AC + ++ A + +L Q
Sbjct: 608 VDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRA 667
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLLSN YA G WT+VA R N++E RK PG+S + +
Sbjct: 668 GVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVN 710
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 166/362 (45%), Gaps = 63/362 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H V K L+ D+++ N LIHFY +F+ M R+V SW +L+ Y
Sbjct: 150 GIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYAR 209
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + LF +++ GI +T+V + SACA+L L G+ V Y ++GL+ M
Sbjct: 210 GDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVM 269
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC +D A RLFD E VD++
Sbjct: 270 VNALVDMYMKCGAIDAAKRLFD--------------------------------ECVDRN 297
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+VL+ +++ + EAL + +M+ +G PD M+S +SA + L +L YG++ H
Sbjct: 298 LVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHG 357
Query: 242 FILQNNITQDAFVKTALIDMYSKC-------------------------------GSLEE 270
++++N + + +IDMY KC G +E
Sbjct: 358 YVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVES 417
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F + ++ V W TMI GL L +A+ +F +M+ +GIK + T + + +AC +
Sbjct: 418 AWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGY 477
Query: 331 SG 332
G
Sbjct: 478 LG 479
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 159/333 (47%), Gaps = 40/333 (12%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFD--KMPFRDVGSWNTLMS 57
K LH +TK LD L++ +A AR F+ K R + L S
Sbjct: 42 KQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNS 101
Query: 58 IYNDFSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG 114
+ +S +G E ++L+ +++ G+ + T + S C ++ G VH K+G
Sbjct: 102 LIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMG 161
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF 174
LE + ++N L+ YA+C MD ++F+ M S RN+VS
Sbjct: 162 LEEDVFIQNCLIHFYAECGHMDHGHKVFEGM-SERNVVS--------------------- 199
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
W S++ G + +P+EA+ LF +M++ G+ P MV V+SAC+ L +L
Sbjct: 200 ----------WTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLD 249
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
G V +I + + + + AL+DMY KCG+++ A F + +++V + T++ A
Sbjct: 250 MGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYA 309
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
GL EAL + +M ++G +P+ T +S ++A
Sbjct: 310 RQGLAREALAILDEMLQQGPRPDRVTMLSAISA 342
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 99/184 (53%), Gaps = 8/184 (4%)
Query: 153 SLNILINGYIDM---ELVDLAR---EVFDEIVDKDIVLW--RSMMHGCVKAKQPEEALEL 204
+L L+N ++ E +D AR E+F E V D L+ S++ G A EA+ L
Sbjct: 59 TLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILL 118
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
+ +M+ GVTP+ VLS C+ ++ G VH +++ + +D F++ LI Y++
Sbjct: 119 YVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAE 178
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
CG ++ F ++VV+WT++I G A EA+ +F++M GI+P+ T V V
Sbjct: 179 CGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCV 238
Query: 325 LAAC 328
++AC
Sbjct: 239 ISAC 242
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 17/180 (9%)
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE-----ALVTFYKT 278
L C +L+ L+ +H I +N + Q T L++ ++ S E +K
Sbjct: 32 LRCCKTLNQLKQ---LHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKE 88
Query: 279 DCKD---VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335
D + + ++I G ++ GLG EA+ ++ +M G+ PN TF VL+ C
Sbjct: 89 DVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFC 148
Query: 336 EGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
EG Q+ G V ++ + F+ CL+ + G + + + M +E +S+ +L+
Sbjct: 149 EGIQVH---GSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGM-SERNVVSWTSLI 204
>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 802
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 161/492 (32%), Positives = 273/492 (55%), Gaps = 34/492 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI-- 58
+G+ +H+ V K L S + V NS+++ YG+ AR +F++MP R V SWN ++S+
Sbjct: 180 VGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDA 239
Query: 59 -----------------------------YNDFSDSGEVLILFKQLI-FEGIVADKITLV 88
YN + + L F +++ + + D+ T+
Sbjct: 240 HLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTIT 299
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE-MGS 147
+ SACA L + GK VH Y + + Y+ + NAL+ MYAK ++ A + + + +
Sbjct: 300 SVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMA 359
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
N++S L+ GY+ + + ARE+FD + ++D+V W +M+ G + +EA+ELF+
Sbjct: 360 DLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRL 419
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
MI G P+ + +VLS C+SL+ L+YG+ +H +++ Q + V +++ MY++ GS
Sbjct: 420 MIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGS 479
Query: 268 LEEALVTFYKTDC-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
L A F + K+ VTWT+MI LA +GLG +A+ +F +M R G+KP+ TFV VL+
Sbjct: 480 LPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLS 539
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC H G + EG + F+++ + + P + H+ C+VDLL+RAGL +A+EFI+ MP E
Sbjct: 540 ACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDA 599
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
I++ +LLSAC + DL + A ++ + + AY LSN Y+ G W + A+ +
Sbjct: 600 IAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRR 659
Query: 447 KELQTRKKPGNS 458
K+ +K+ G S
Sbjct: 660 KDKSVKKETGFS 671
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 178/362 (49%), Gaps = 35/362 (9%)
Query: 13 ALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILF 72
A +++ NSL+ Y + DAR +F +MP RD SW ++ N GE + +F
Sbjct: 91 AAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMF 150
Query: 73 KQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKC 132
++ +G+ + TL + S+CA E G+ VH + K+GL + + N++L MY KC
Sbjct: 151 LDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKC 210
Query: 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC 192
+ + A +F+ M R++ S N +++ + +DLA +F+ + D+ IV W +++ G
Sbjct: 211 GDAETARAVFERM-PERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGY 269
Query: 193 VKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
+ +AL F +M+ + PDE + SVLSAC++L + G+ VH +IL++ +
Sbjct: 270 NQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYI 329
Query: 252 AFVKTALIDMYSKCGSLEEA-------------LVTFYK--------------------T 278
V ALI MY+K GS+E A +++F
Sbjct: 330 GQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVM 389
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338
+DVV WT MI G G +EA+ +F M R G +PN T +VL+ C + G
Sbjct: 390 SNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGK 449
Query: 339 QL 340
Q+
Sbjct: 450 QI 451
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 103/401 (25%), Positives = 178/401 (44%), Gaps = 53/401 (13%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE-----MDEALRLFDE 144
L C G+ +H A K GL + N LL YA EA RLFDE
Sbjct: 29 LLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDE 88
Query: 145 M-GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
+ ++RN+ + N L++ Y + AR VF E+ ++D V W M+ G + + EA++
Sbjct: 89 IPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIK 148
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
+F M+ +G++P + + +VLS+C++ GR VH F+++ ++ V ++++MY
Sbjct: 149 MFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYG 208
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI--------- 314
KCG E A F + + V +W M+ A+ G + AL +F M + I
Sbjct: 209 KCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAG 268
Query: 315 -----------------------KPNEATFVSVLAACRHSGLITEGCQ-----LFRRMGG 346
P+E T SVL+AC + G+++ G Q L RM
Sbjct: 269 YNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPY 328
Query: 347 VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI-KIMPAEDKFISYKALLSACITYSEFDLG 405
+ +V L+ + +++G + A + + + A+ IS+ ALL + +
Sbjct: 329 IGQVTNA------LISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHA 382
Query: 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
+++ + M N+ A+ + Y GH E E R M
Sbjct: 383 REMFDVM---SNRDVVAWTAMIVGYEQNGHNDEAMELFRLM 420
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 159/461 (34%), Positives = 256/461 (55%), Gaps = 33/461 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH V K L SD+Y+ +L++ Y AR LF++M R+ W +++S Y
Sbjct: 97 VGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYM 156
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L+L+K++ +G D++T+ L SACA L+ L G +H + ++ ++
Sbjct: 157 KNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAV 216
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +AL+ MYAKC ++ A R+VFD++ DK
Sbjct: 217 LGSALVNMYAKCGDLKTA--------------------------------RQVFDKLSDK 244
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+ W +++ G VK + EAL+LF+++ + P+E +++V+SAC+ L +L+ GR V
Sbjct: 245 DVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWV 304
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I + + +LIDM+SKCG ++ A F KD+++W +M+ G A +GLG
Sbjct: 305 HDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLG 364
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL F M+ ++P+E TF+ VL AC H+GL+ EG +LF + +Y V+ EH+ C
Sbjct: 365 REALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGC 424
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL RAGLL +A EFI++MP + + ++L AC Y+ +LG++ A ++KL +
Sbjct: 425 MVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTN 484
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
Y+LLSN YA W EV + R M E +K PG S +
Sbjct: 485 DGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSV 525
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 167/354 (47%), Gaps = 44/354 (12%)
Query: 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTV 106
DV +WN+++ + + + L + +++ V D+ T L CA L + GK +
Sbjct: 42 DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101
Query: 107 HCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMEL 166
H K L L +E LL MYA C ++ A LF+ MG R +V
Sbjct: 102 HGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVV-------------- 147
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
W SM+ G +K P EAL L+KKM ++G +PDE M +++SA
Sbjct: 148 ------------------WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSA 189
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C+ L +L G +H I + ++ A + +AL++MY+KCG L+ A F K KDV W
Sbjct: 190 CAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAW 249
Query: 287 TTMIEGLANYGLGNEALRVFYQME-RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
+ +I G EAL++F ++ ++PNE T ++V++AC G + G R
Sbjct: 250 SALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG-----RWV 304
Query: 346 GVYRVQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
Y + H V L+D+ S+ G + A+ M +D IS+ ++++
Sbjct: 305 HDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKD-LISWNSMVNG 357
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 3/179 (1%)
Query: 153 SLNILINGYIDMEL--VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
SLN LI + M V A VF + D++ W SM+ V + P AL+ + +M++
Sbjct: 12 SLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71
Query: 211 EGVT-PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
PD S+L C+ L + G+++H +++ + D +++T L++MY+ CG L+
Sbjct: 72 RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLK 131
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
A F + ++ V WT+MI G NEAL ++ +ME G P+E T ++++AC
Sbjct: 132 SARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSAC 190
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
[Brachypodium distachyon]
Length = 1430
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 164/468 (35%), Positives = 258/468 (55%), Gaps = 8/468 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HA V+K+ D+Y+G++L+ Y + +AR +F+ MP R++ SWN+L++ Y
Sbjct: 911 GVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQ 970
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLN 120
GE L+LF ++ G V D++TL + SACA L G+ VH K +
Sbjct: 971 NGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMV 1030
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC A +FD M SR ++VS LI GY V+ A+ VF ++V+K
Sbjct: 1031 LSNALVDMYAKCGRTRAARCVFDRMASR-SVVSETSLITGYARSANVEDAQMVFSQMVEK 1089
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+++ W ++ + + EEAL LF ++ E V P +VL+AC ++++LQ G+ H
Sbjct: 1090 NVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAH 1149
Query: 241 RFILQNNIT------QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
+L+ D FV +L+DMY K GS+++ F + +D V+W MI G A
Sbjct: 1150 VHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHA 1209
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
G +AL +F +M P+ T + VL+AC HSGL+ EG + FR M + + P+
Sbjct: 1210 QNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQ 1269
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+H+ C++DLL RAG L + EE IK M E + + +LL +C + ++G+ A + +
Sbjct: 1270 DHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWAAGKLFE 1329
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
L ++ YVLLSN YA G W +V R +MK K+PG S I++
Sbjct: 1330 LDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIEI 1377
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 189/394 (47%), Gaps = 34/394 (8%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ + S++ DA+ +F+ M R++ SWN +++ Y D L+LF+Q+
Sbjct: 317 DMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMR 376
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
E D ITL + SAC + + G+ VH +A K G ++NAL+ MY+KC +
Sbjct: 377 QETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLR 436
Query: 137 EALRLF-DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195
A RL EMGS R+ S W S++ G +
Sbjct: 437 SAERLLLFEMGSERDSYS-------------------------------WNSLISGYERH 465
Query: 196 KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK 255
E AL KM E VTP++ S L+AC+++ L+ G +H ++++ D ++
Sbjct: 466 SMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILR 524
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
+ LIDMY KC + ++ F +DV+ W +MI G A G G L +F +M+++GIK
Sbjct: 525 SVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIK 584
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
+ TF+ L +C G + G F M + P IEH+ C+++LL + G + + E+
Sbjct: 585 ADSVTFLGALVSCISEGHVRLGRSYFTLMMD-ESIIPRIEHYECMIELLGKHGCMVELED 643
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
F++ MP E + + C Y LG++ A
Sbjct: 644 FVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAA 677
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/419 (26%), Positives = 209/419 (49%), Gaps = 10/419 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
+ LH H+ K S++ +G +L+ YG L DAR FD + + SWN ++ Y+
Sbjct: 170 ARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYH- 228
Query: 62 FSDSGEVLI-LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ G++ + +F +++ G+ T+ AC L G+ +H + + G E+ ++
Sbjct: 229 LAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVH 288
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ ++++ MYAKC MD A LF+ + +++V +++G + A+ VF+ + ++
Sbjct: 289 VRSSVVDMYAKCGAMDAAQSLFN-LAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKER 347
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++V W +M+ G +++ AL LF++M E D + SVLSAC+ + ++ G VH
Sbjct: 348 NLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVH 407
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLANYGL 298
F ++ +K AL+ MYSKCG L A L+ F +D +W ++I G + +
Sbjct: 408 AFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSM 467
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM-GGVYRVQPTIEHF 357
AL +M+ + + PN++TF S LAAC + L+ +G Q+ M Y + +
Sbjct: 468 SEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSV 526
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L+D+ + + + P+ D I + +++ C + + G + + M K G
Sbjct: 527 --LIDMYCKCRQFDYSIRIFEARPSRD-VILWNSMIFGCAYSGKGEYGLDLFDEMQKQG 582
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 126/510 (24%), Positives = 211/510 (41%), Gaps = 109/510 (21%)
Query: 11 KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLI 70
K+ ++ ++ N+L+ Y R+ DAR +FD++P + S+N L+S + +
Sbjct: 788 KSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARA 847
Query: 71 LF------KQLIFEGIVA-------------------------DKITLVILFSACARLEK 99
LF Q + ++A + + SACA +
Sbjct: 848 LFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKD 907
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
G VH +K + + +ALL MYAKC+ +EA R+F+ M RNIVS N LI
Sbjct: 908 SRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAM-PERNIVSWNSLIT 966
Query: 160 GYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP-EEALELFKKMIDEGVTPDEE 218
C + P EAL LF M+ G PDE
Sbjct: 967 --------------------------------CYEQNGPVGEALVLFVSMMKAGFVPDEV 994
Query: 219 VMVSVLSACSSLSNLQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCG----------- 266
+ SV+SAC+ L+ + GR VH R + + +D + AL+DMY+KCG
Sbjct: 995 TLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDR 1054
Query: 267 --------------------SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
++E+A + F + K+V+ W +I A G EALR+F
Sbjct: 1055 MASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLF 1114
Query: 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM---GGVYRVQPTIEHFV--CLV 361
+++R+ + P T+ +VL AC + + G Q + G + P + FV LV
Sbjct: 1115 VRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLV 1174
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN--NMMKLGNQS 419
D+ + G + + + M A D +S+ A++ + +++ K + M +S
Sbjct: 1175 DMYLKTGSIDDGAKVFERMAARDN-VSWNAMI---VGHAQNGRAKDALHLFERMLCSKES 1230
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKEL 449
++ ++ A GH V E RR + +
Sbjct: 1231 PDSVTMIGVLSAC-GHSGLVEEGRRYFRSM 1259
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 132/280 (47%), Gaps = 32/280 (11%)
Query: 35 TDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSAC 94
DAR LFD MP RD GSWN +++ + E L LF + GI T+ + S C
Sbjct: 102 ADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCC 161
Query: 95 ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSL 154
A L + +H + K + + + AL+ +Y C + +A R FD++ N +S
Sbjct: 162 AECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDI-LEPNAISW 220
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
N+++ Y + D+ A+++F +M+ GV
Sbjct: 221 NVIVRRYHLAGMGDM-------------------------------AVDMFFRMLSAGVR 249
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
P + + AC + L+ GR +H F+L++ V+++++DMY+KCG+++ A
Sbjct: 250 PLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSL 309
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
F KD+V T+++ GLA+ G +A RVF M+ + +
Sbjct: 310 FNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNL 349
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 9/223 (4%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
ARE+FD + +D W +++ +A P EAL LF M G+ P + M SVLS C+
Sbjct: 104 ARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAE 163
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+L R +H I + + + + TAL+D+Y C L +A F + ++W +
Sbjct: 164 CLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVI 223
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
+ G+G+ A+ +F++M G++P T + ACR + + EG R +
Sbjct: 224 VRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEG-----RCIHAFV 278
Query: 350 VQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
++ EH V +VD+ ++ G + A+ + P +D +S
Sbjct: 279 LRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMS 321
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 118/274 (43%), Gaps = 37/274 (13%)
Query: 1 MGKG--LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDAR--VLFDKMPFRDVGSWNTLM 56
+GKG +HA K S + N+L+ Y + A +LF+ RD SWN+L+
Sbjct: 400 IGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLI 459
Query: 57 SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
S Y S S L ++ E + ++ T +ACA + L G +H Y + G E
Sbjct: 460 SGYERHSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYE 518
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + L+ MY KC++ D ++R+F+ SR
Sbjct: 519 IDDILRSVLIDMYCKCRQFDYSIRIFEARPSR---------------------------- 550
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
D++LW SM+ GC + + E L+LF +M +G+ D + L +C S +++ G
Sbjct: 551 ----DVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLG 606
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
R ++ +I +I++ K G + E
Sbjct: 607 RSYFTLMMDESIIPRIEHYECMIELLGKHGCMVE 640
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 159/498 (31%), Positives = 276/498 (55%), Gaps = 36/498 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI-- 58
+G+ +H+ V K L S + V NS+++ YG+ A +F++MP R V SWN ++S+
Sbjct: 182 VGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNT 241
Query: 59 -----------------------------YNDFSDSGEVLILFKQLIFEGIVA-DKITLV 88
YN + L LF +++ E +A D+ T+
Sbjct: 242 HLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTIT 301
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE-MGS 147
+ SACA L + GK VH Y + + Y + NAL+ YAK ++ A R+ D+ M +
Sbjct: 302 SVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMET 361
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
N++S L+ GY+ + ++ ARE+F + ++D+V W +M+ G + + +EA++LF+
Sbjct: 362 DLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRS 421
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
MI G P+ + +VLS C+SL+ L YG+ +H +++ + + + V A+I MY++ GS
Sbjct: 422 MITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGS 481
Query: 268 LEEALVTFYKTDC--KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
A F + C K+ +TWT+MI LA +G G EA+ +F +M R G++P+ T+V VL
Sbjct: 482 FPWARRMFDQV-CWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVL 540
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+AC H+G + EG + + ++ +++ P + H+ C+VDLL+RAGL +A+EFI+ MP E
Sbjct: 541 SACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPD 600
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
I++ +LLSAC + +L + A ++ + + AY ++N Y+ G W++ A +
Sbjct: 601 AIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKA 660
Query: 446 MKELQTRKKPGNSIIDLK 463
KE RK+ G S ++
Sbjct: 661 RKEKAVRKETGFSWTHIR 678
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/435 (25%), Positives = 208/435 (47%), Gaps = 38/435 (8%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
+++ NSL+ + + DAR +F +MP RD SW ++ N GE + +
Sbjct: 97 NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+G + TL + S+CA + G+ VH + K+GL + + N++L MY KC + +
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAE 216
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A +F+ M R++ S N +++ + +DLA +F+ + + IV W +M+ G +
Sbjct: 217 TASTVFERM-PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNG 275
Query: 197 QPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK 255
+AL+LF +M+ E + PDE + SVLSAC++L N++ G+ VH +IL+ + ++ V
Sbjct: 276 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVT 335
Query: 256 TALIDMYSKCGSLEEA-------------LVTFYK--------------------TDCKD 282
ALI Y+K GS+E A +++F + +D
Sbjct: 336 NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRD 395
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF- 341
VV WT MI G G +EA+ +F M G +PN T +VL+ C + G Q+
Sbjct: 396 VVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHC 455
Query: 342 RRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
R + + ++ + ++ + +R+G A + + I++ +++ A + +
Sbjct: 456 RAIRSLLERSSSVSN--AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQ 513
Query: 402 FDLGKKVANNMMKLG 416
+ + M++ G
Sbjct: 514 GEEAVGLFEEMLRAG 528
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 158/360 (43%), Gaps = 45/360 (12%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE----MDEALRLFDEM 145
L C G+ +H A K GL + N LL Y + + +A RLFDE+
Sbjct: 32 LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91
Query: 146 G-SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
+RRN+ + N L++ + + AR VF E+ ++D V W M+ G +A + EA++
Sbjct: 92 PLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKT 151
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
M +G TP + + +VLS+C+ GR VH F+++ + V ++++MY K
Sbjct: 152 LLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGK 211
Query: 265 CGSLEEALVTFYKTDCKDV-------------------------------VTWTTMIEGL 293
CG E A F + + V V+W MI G
Sbjct: 212 CGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGY 271
Query: 294 ANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMGGVYR 349
GL +AL++F +M + P+E T SVL+AC + G + G Q+ R Y
Sbjct: 272 NQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYN 331
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFI-KIMPAEDKFISYKALLSACITYSEFDLGKKV 408
Q T L+ +++G + A + + M + IS+ ALL + + + +++
Sbjct: 332 SQVT----NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREM 387
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 165/492 (33%), Positives = 263/492 (53%), Gaps = 32/492 (6%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD-ARVLFDKMPFRDVGSWNTLMSIYND 61
K +HA + T D ++ + Y A D A +F + + D SW T++ + +
Sbjct: 44 KKIHAQLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVE 103
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + L + + G+ +K T + + A G+ VH KVG Y +
Sbjct: 104 AKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFT 163
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSR------------------------------RNI 151
NAL+ MY KC + +A LFDEM + RN+
Sbjct: 164 RNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNV 223
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
S N ++ GY + VD+AR +FD + ++D+V W SM+ V+ + EALELFK+M+
Sbjct: 224 GSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLA 283
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
GV+ D ++ S+LSAC+ + L GR +H ++ ++ + D F+ TAL+DMY+KCG ++ A
Sbjct: 284 GVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTA 343
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
F K++ +W M+ GLA +G G AL +F QME G+ PN+ TFV+VL+AC H
Sbjct: 344 FGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACSHI 403
Query: 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKA 391
G + EG + F +M + + P +EH+ C+VD+L R GL+ +A+E I+ MP E + + A
Sbjct: 404 GSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGA 463
Query: 392 LLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451
LL+AC + ++G+ V + KL ++ YVLLSN +A + W EV + R+ MK++
Sbjct: 464 LLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMGV 523
Query: 452 RKK-PGNSIIDL 462
KK PG S I+L
Sbjct: 524 EKKIPGYSSIEL 535
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 56/103 (54%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +HA++ ++ L +D+++ +L+ Y + A +F+ MP +++ SWN ++S
Sbjct: 307 MGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLA 366
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG 103
L LFKQ+ G+ + IT V + SAC+ + + G
Sbjct: 367 IHGHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGSVEEG 409
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 90/207 (43%), Gaps = 10/207 (4%)
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS-KCGSLEEALVTFYKTD 279
+S L +C S +L + +H ++ +D F+ T ++ Y+ +++ A F +
Sbjct: 31 LSALQSCKSTEDL---KKIHAQLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFVGIN 87
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339
D +WTTMI G +AL + M ++G++ N+ TF+ VL A EG
Sbjct: 88 YPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRI 147
Query: 340 LFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
+ G + +V + F L+ + + G + A MP + +++ +++ C
Sbjct: 148 VH---GKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHN-VVTWNTMITGCF 203
Query: 398 TYSEFDLGKKVANNMMKLGNQSHEAYV 424
+ + +++ M + S A V
Sbjct: 204 GCGDTERARRLFGEMPERNVGSWNAVV 230
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 154/450 (34%), Positives = 254/450 (56%), Gaps = 2/450 (0%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
D + N++I Y + + +A+ LFD+MPFR+ SW +++ Y S E L L +
Sbjct: 349 DPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQA 408
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
L G++ +L F AC+ + L G+ VH A K G ++ + NAL+ MY KC+
Sbjct: 409 LHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRN 468
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
M+ ++F+ M ++ VS N I + +++ AR +FD ++ +D+V W +++ +
Sbjct: 469 MEYVRQVFNRM-RVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQ 527
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
A++ +EA+E FK M+ E P+ ++ +LS C L + + G+ +H +++ + + V
Sbjct: 528 AERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIV 587
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
AL+ MY KCG + V F + +D+ TW T I G A +GLG EA++++ ME G+
Sbjct: 588 ANALMSMYFKCGCADSHKV-FDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGV 646
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
PNE TFV +L AC H+GL+ EG Q F+ M Y + P +EH+ C+VDLL R G + AE
Sbjct: 647 LPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAE 706
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
+FI MP E + + ALL AC + ++G++ A + + YV+LSN Y+ G
Sbjct: 707 KFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLG 766
Query: 435 HWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
W EVAE R+ MK+ K+PG S + +++
Sbjct: 767 MWVEVAELRKIMKQRGVSKEPGCSWMQIRN 796
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 104/387 (26%), Positives = 198/387 (51%), Gaps = 28/387 (7%)
Query: 13 ALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILF 72
ALD + ++ I R+ +AR +FD MP RD+ +WN+++S Y +SG ++
Sbjct: 30 ALDKSAH--SARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAY---CNSG--MLED 82
Query: 73 KQLIFEGIVADKI-TLVILFSACARLEKLHYGKTVHCYATKVGL-EYMLNMENALLLMYA 130
+++F+ I + T IL S ARL G+ + G+ E NA++ Y
Sbjct: 83 ARILFDAISGGNVRTATILLSGYARL-----GRVLDARRVFDGMPERNTVAWNAMVSCYV 137
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYI-DMELVDLAREVFDEIVDKDIVLWRSMM 189
+ ++ A RLFD M SR ++ S N ++ GY ++VD A +F ++ +++V W M+
Sbjct: 138 QNGDITMARRLFDAMPSR-DVTSWNSMVTGYCHSRQMVD-AWNLFKQMPQRNLVTWTVMI 195
Query: 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249
G V+ +Q + ++F+ M EG +PD+ SVLSA + L +L ++ +L+
Sbjct: 196 SGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFE 255
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDC-KDVVTWTTMIEGLANYGLGNEALRVFYQ 308
D + T+++++Y++ S + + F+ ++ TW+TMI L++ G + A+ V+ +
Sbjct: 256 SDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGR 315
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
K I P++ ++ LA C G ITE LF ++ P + + ++ + G
Sbjct: 316 DPVKSI-PSQTALLTGLARC---GRITEARILFEQI-----PDPIVVSWNAMITGYMQNG 366
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSA 395
++ +A+E MP + IS+ +++
Sbjct: 367 MVDEAKELFDRMPFRNT-ISWAGMIAG 392
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 154/366 (42%), Gaps = 76/366 (20%)
Query: 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARV-LFDKMPFRDVGSWNTLMSIYNDFSDSGE 67
V KT +SD+ +G S+++ Y R A D + FD M R+ +W+T+++
Sbjct: 249 VLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIA---------- 298
Query: 68 VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM--ENAL 125
L +G + G + + ++ + AL
Sbjct: 299 -------------------------------ALSHGGRIDAAIAVYGRDPVKSIPSQTAL 327
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
L A+C + EA LF+++ +VS N +I GY+ +VD A+E+FD + ++ + W
Sbjct: 328 LTGLARCGRITEARILFEQIPDPI-VVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISW 386
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
M+ G + + EEAL+L + + G+ P + S ACS + L+ GR VH ++
Sbjct: 387 AGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVK 446
Query: 246 NNITQDAFVKTALIDMYSKCGS-------------------------------LEEALVT 274
+++V ALI MY KC + LE+A
Sbjct: 447 AGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHI 506
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F +DVV+WTT+I A G+EA+ F M + KPN +L+ C G
Sbjct: 507 FDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSA 566
Query: 335 TEGCQL 340
G Q+
Sbjct: 567 KLGQQI 572
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 163/412 (39%), Gaps = 103/412 (25%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMA----------------------------- 32
G+ +H+ K + YV N+LI YG+
Sbjct: 437 GRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQ 496
Query: 33 --LFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+ DAR +FD M RDV SW T++S Y E + FK ++ E + L IL
Sbjct: 497 NNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTIL 556
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
S C L G+ +H A K G++ L + NAL+ MY KC D + ++FD M R
Sbjct: 557 LSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SHKVFDSMEER-- 613
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
DI W + + GC + EA+++++ M
Sbjct: 614 ------------------------------DIFTWNTFITGCAQHGLGREAIKMYEHMES 643
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
GV P+E V +L+ACS + G + ++++D + T L++ Y+
Sbjct: 644 VGVLPNEVTFVGLLNACSHAGLVDEG-----WQFFKSMSRD-YGLTPLLEHYA------- 690
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
M++ L G A + Y M I+P+ + ++L AC+
Sbjct: 691 -----------------CMVDLLGRTGDVQGAEKFIYDMP---IEPDTVIWSALLGACK- 729
Query: 331 SGLITEGCQLFRRMG-GVYRVQPT-IEHFVCLVDLLSRAGLLYQAEEFIKIM 380
I + ++ RR ++ +P+ ++V L ++ S G+ + E KIM
Sbjct: 730 ---IHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIM 778
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H K +DS++ V N+L+ Y + D+ +FD M RD+ +WNT ++
Sbjct: 568 LGQQIHTVAIKHGMDSELIVANALMSMYFKCGC-ADSHKVFDSMEERDIFTWNTFITGCA 626
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
E + +++ + G++ +++T V L +AC+
Sbjct: 627 QHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACS 661
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 168/463 (36%), Positives = 255/463 (55%), Gaps = 4/463 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFY--GRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K LHAH+ + L LI Y + AR+LFD + +NT+ +Y
Sbjct: 5 KRLHAHLITSGLHQQENHLRKLITLYTSSSSSSLHHARLLFDAIHHPSTYLYNTMFRVYA 64
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
L+L + ++ G D T L AC+ L L G+ +HC A K GL +
Sbjct: 65 ASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPKGQELHCQALKFGLGGHVF 124
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+EN+L+ +Y MD A R+FD MG R+I S L+ Y + V AR+VFDE+ ++
Sbjct: 125 VENSLIHLYGSNSGMDSARRVFDGMG-YRDIASWTTLLACYANSCSVKAARKVFDEMPER 183
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ + +M+ V+ + EAL+LF+++ + P + ++SVL AC++L L GR V+
Sbjct: 184 SVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVY 243
Query: 241 RFILQNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
++ Q+ D+ + TALIDM+ KCGS+E AL+ F K V WT M+ GLA +GLG
Sbjct: 244 SYVCQSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLG 303
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+ + F +M G+KPN TFV++L+ C HSGL+ EG F RM + V+PT+EHF C
Sbjct: 304 EQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGC 363
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL RAGL+ QA + I MP E + +LL+AC Y ++G+ A ++K +
Sbjct: 364 VVDLLGRAGLIDQAMQLISEMPFEPNAAIWGSLLNACRVYKNVEIGELAAQWLIKDEPWN 423
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+ L + Y G W EV + + MKE+ RK PG S+I++
Sbjct: 424 GALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIEV 466
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 145/360 (40%), Gaps = 97/360 (26%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH K L ++V NSLIH YG + AR +FD M +RD+ SW TL++ Y +
Sbjct: 107 GQELHCQALKFGLGGHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYAN 166
Query: 62 -------------------FSDSG------------EVLILFKQLIFEGIVADKITLVIL 90
S S E L LF++L I ++ +
Sbjct: 167 SCSVKAARKVFDEMPERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSV 226
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYM-LNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
ACA L L G+ V+ Y + +Y+ + AL+ M+ KC ++ AL +F+ G++
Sbjct: 227 LCACANLGALDVGRWVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHALLVFE--GAK- 283
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+K + W +M+ G E+ +E F+KM+
Sbjct: 284 -----------------------------EKHVGEWTAMLSGLAMHGLGEQLIEAFEKMV 314
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
D GV P+ V++LS CS + LV+ + + + F ++ +
Sbjct: 315 DSGVKPNGVTFVALLSGCS------HSGLVNEGLYYFDRMESDFGVEPTVEHFG------ 362
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+++ L GL ++A+++ +M +PN A + S+L ACR
Sbjct: 363 ------------------CVVDLLGRAGLIDQAMQLISEMP---FEPNAAIWGSLLNACR 401
>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
Length = 865
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/469 (34%), Positives = 251/469 (53%), Gaps = 37/469 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H K+ LDSD+ V NSL++ Y +M AR +F+ M D+ SWN+++S
Sbjct: 304 LGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCA 363
Query: 61 DFSDSGEVLILFKQLIFEGIVAD-----KITLVILFSACARLEKLHYGKTVHCYATKVGL 115
S E + LF L+ EG+ D ITL AC L L GK +H +A K G
Sbjct: 364 QSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGF 423
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ L++ + +L MY KC +M +N I VF+
Sbjct: 424 DSDLHVNSGILDMYIKCGDM----------------------VNAGI----------VFN 451
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
I D V W SM+ GCV ++AL ++ +M V PDE +++ A S ++ L+
Sbjct: 452 YISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQ 511
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
GR +H +++ + D FV T+L+DMY+KCG++E+A F K + +++ W M+ GLA
Sbjct: 512 GRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQ 571
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
+G EA+ +F M+ GI+P+ +F+ +L+AC H+GL +E + M Y ++P IE
Sbjct: 572 HGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIE 631
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
H+ CLVD L RAGL+ +A++ I+ MP + +ALL AC + + GK+VA + L
Sbjct: 632 HYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFAL 691
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
AYVLLSN YA W +V +AR+ MK +K PG S ID+K+
Sbjct: 692 EPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKN 740
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/388 (27%), Positives = 184/388 (47%), Gaps = 44/388 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
+G+H + K L+ D++V +L++ Y + DAR+LFD M RDV WN ++ Y
Sbjct: 202 AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQ 261
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSAC--ARLEKLHYGKTVHCYATKVGLEYML 119
E LF + G+ D+ ++ ++ + C A + L GK VH A K GL+ +
Sbjct: 262 LGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDV 321
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ N+L+ MY+K M AREVF+++
Sbjct: 322 SVANSLVNMYSK--------------------------------MGCAYFAREVFNDMKH 349
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL-----SACSSLSNLQ 234
D++ W SM+ C ++ EE++ LF ++ EG+ PD + S+ AC L L
Sbjct: 350 LDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLD 409
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
G+ +H ++ D V + ++DMY KCG + A + F D V WT+MI G
Sbjct: 410 QGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCV 469
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
+ G ++ALR++++M + + P+E TF +++ A + +G QL V ++
Sbjct: 470 DNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLH---ANVIKLDCVS 526
Query: 355 EHFV--CLVDLLSRAGLLYQAEEFIKIM 380
+ FV LVD+ ++ G + A K M
Sbjct: 527 DPFVGTSLVDMYAKCGNIEDAYRLFKKM 554
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/428 (24%), Positives = 187/428 (43%), Gaps = 50/428 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK HA + + D ++ N+L+ Y + + AR +FD P RD+ +WN ++ Y
Sbjct: 95 LGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYA 154
Query: 61 DFSDSG-----EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
DS E L LF+ L ++TL + C L + VH YA K+GL
Sbjct: 155 ASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGL 214
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
E+ + + AL+ +Y+KC M +A LFD M R++V N+++ GY+ + L
Sbjct: 215 EWDVFVSGALVNIYSKCGRMRDARLLFDWM-RERDVVLWNMMLKGYVQLGL--------- 264
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC--SSLSNL 233
+EA +LF + G+ PDE + +L+ C + +L
Sbjct: 265 ----------------------EKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDL 302
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
+ G+ VH +++ + D V +L++MYSK G A F D+++W +MI
Sbjct: 303 ELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSC 362
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A L E++ +F + +G+KP+ T S+ A GC + G
Sbjct: 363 AQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKAC---GCLVLLDQGKQIHAHAI 419
Query: 354 IEHF-------VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406
F ++D+ + G + A + A D +++ +++S C+ D
Sbjct: 420 KAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDD-VAWTSMISGCVDNGNEDQAL 478
Query: 407 KVANNMMK 414
++ + M +
Sbjct: 479 RIYHRMRQ 486
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 14/171 (8%)
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
+L S NL G+ H I+ + D F+ L+ MYSKCGSL A F T +D
Sbjct: 83 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142
Query: 283 VVTWTTMIEGLA-----NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI--T 335
+VTW ++ A N G E L +F + T VL C +SG +
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 202
Query: 336 EGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAED 384
EG G ++ + FV LV++ S+ G + A M D
Sbjct: 203 EGVH-----GYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERD 248
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 168/461 (36%), Positives = 251/461 (54%), Gaps = 36/461 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V K L +D YV NSLI YG F+ A +FD+M RDV SWN+L+S +
Sbjct: 124 GRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMK 183
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + +F ++ E TLV + +ACAR L GK +H + + L +
Sbjct: 184 AGHFDEAISVFFRMDVE---PSMTTLVSVLAACARNGDLCTGKGIHGVIER-RFKVNLVL 239
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NA+L MY K EA + +FDE+ +D
Sbjct: 240 GNAMLDMYVKNGCFYEA--------------------------------KNIFDELPTRD 267
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W M+ G V++ P+++LELF M G++PD ++ SVLSAC+SL L +G VH
Sbjct: 268 IVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHE 327
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I Q I D + TA++DMY+KCG +E AL FY ++ TW ++ GLA +GL +E
Sbjct: 328 YINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHE 387
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M G+KPNE TF+++L AC H GL+ EG + F M +Y + P +EH+ C++
Sbjct: 388 ALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMI 447
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL RAGLL +A E + MP + + + LL+AC T +L ++ + +++L +
Sbjct: 448 DLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQDYILELDHDDSG 507
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+VLLSN A+ W+ V RR MK+ RK PG+S+I++
Sbjct: 508 VFVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGSSVIEV 548
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/483 (23%), Positives = 203/483 (42%), Gaps = 75/483 (15%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSW--NTLMSIYN 60
+ +HA + + L D +V + ++ F+ + D + + +GS+ N+L++ Y
Sbjct: 22 RQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTRLGSFPFNSLINGYV 81
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ ++++++ +G V D T +L AC+ G+ VH K+GL
Sbjct: 82 GGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHY 141
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++N+L+ Y C + A ++FDEM R++VS N LI+G++
Sbjct: 142 VQNSLIRCYGACGDFSCAGKVFDEM-LVRDVVSWNSLISGFM------------------ 182
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
KA +EA+ +F +M V P +VSVL+AC+ +L G+ +H
Sbjct: 183 -------------KAGHFDEAISVFFRM---DVEPSMTTLVSVLAACARNGDLCTGKGIH 226
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + + A++DMY K G EA F + +D+V+WT MI GL
Sbjct: 227 G-VIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPK 285
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
++L +F M GI P+ SVL+AC G + G + + ++ I +
Sbjct: 286 QSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQ-RGIKWDIHIGTAI 344
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKF---------------------------------- 386
VD+ ++ G + A + M + F
Sbjct: 345 VDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNE 404
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGN--QSHEAYVLLSNFYALEGHWTEVAEARR 444
I++ A+L+AC D G+K +NM KL N E Y + + + G E E R
Sbjct: 405 ITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELAR 464
Query: 445 NMK 447
M
Sbjct: 465 TMP 467
>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
Length = 1145
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 154/450 (34%), Positives = 252/450 (56%), Gaps = 2/450 (0%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ ++ N++I Y + + +A LF++MPFR+ SW +++ Y S + L+ +
Sbjct: 349 EPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQA 408
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
L +G++ +L F AC+ +E L GK VH A K G ++ + NAL+ +Y K +
Sbjct: 409 LHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRS 468
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+ ++FD M + ++ VS N ++ + L D AR+VF+ + D+V W +++ C +
Sbjct: 469 IGSVRQIFDRM-TVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQ 527
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
A Q EA+E+F+ M+ E P+ ++ +L +L Q G+ +H ++ + V
Sbjct: 528 ADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVV 587
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
AL+ MY KC S ++L F + +D+ TW T+I G A +GLG EA+R++ M G+
Sbjct: 588 ANALVSMYFKCSS-ADSLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGV 646
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
PNE TFV +L AC HSGL+ EG Q F+ M Y + P +EH+ C+VDLL RAG + AE
Sbjct: 647 LPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAE 706
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
FI MP E + + ALL AC + ++G++ A + + + YV+LSN Y+ +G
Sbjct: 707 HFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQG 766
Query: 435 HWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
W EVA+ R+ MKE K PG S + +K+
Sbjct: 767 MWDEVAKVRKLMKERGVNKDPGCSWMQIKN 796
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 189/371 (50%), Gaps = 26/371 (7%)
Query: 29 GRMALFTDARVLFDKMPFRDVGSWNTLMSIY--NDFSDSGEVLILFKQLIFEGIVADKI- 85
GR+ +AR +FD MPFRD+ +WN+++ Y N D+G L + I +
Sbjct: 44 GRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLA-------DAISGGNLR 96
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T IL S AR ++ + V +G+ + NA++ Y + ++ A +LFD M
Sbjct: 97 TGTILLSGYARAGRVRDARRVF---DGMGVRNTVAW-NAMVTCYVQNGDITLARKLFDAM 152
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
SR ++ S N ++ GY +L++ AR +F+ + +++ V W M+ G V +Q A ++F
Sbjct: 153 PSR-DVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMF 211
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+ M+ EG+TP++ +VSVLSA L +H + + +D V TA+++ Y+K
Sbjct: 212 RTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKD 271
Query: 266 GSLEEALVTFYK-TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
++ ++ V F++ ++ TW+T+I L+ G ++A V+ + K + P+ + ++
Sbjct: 272 VNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSV-PSRTSMLTG 330
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
LA G I + LF ++ +P + + ++ + ++ +AE+ MP +
Sbjct: 331 LA---RYGRIDDAKILFDQIH-----EPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRN 382
Query: 385 KFISYKALLSA 395
IS+ +++
Sbjct: 383 T-ISWAGMIAG 392
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 169/390 (43%), Gaps = 66/390 (16%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ N+++ Y L +AR LF++MP R+ SW ++S Y G +F+ ++
Sbjct: 156 DVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTML 215
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM- 135
EG+ ++ LV + SA L K +++H K G E + + A+L Y K M
Sbjct: 216 CEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNML 275
Query: 136 DEALRLFDEMGSR------------------------------RNIVSLNILINGYIDME 165
D A++ F+ M +R +++ S ++ G
Sbjct: 276 DSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYG 335
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP---------- 215
+D A+ +FD+I + ++V W +M+ G ++ + +EA +LF +M
Sbjct: 336 RIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYAR 395
Query: 216 ---DEEVMVSVLS------------------ACSSLSNLQYGRLVHRFILQNNITQDAFV 254
E+ +VS+ + ACS++ L+ G+ VH ++ +++V
Sbjct: 396 NGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYV 455
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
ALI +Y K S+ F + KD V++ + + L L +EA VF M
Sbjct: 456 CNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMP---- 511
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRM 344
P+ ++ ++++AC + E ++FR M
Sbjct: 512 SPDVVSWTTIISACAQADQGNEAVEIFRSM 541
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 99/412 (24%), Positives = 169/412 (41%), Gaps = 103/412 (25%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYG-------------RMA---------------- 32
GK +H+ K + YV N+LI YG RM
Sbjct: 437 GKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQ 496
Query: 33 --LFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
LF +AR +F+ MP DV SW T++S E + +F+ ++ E + + L IL
Sbjct: 497 NNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTIL 556
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
L G+ +H A K+G++ L + NAL+ MY KC D +L++FD M R+
Sbjct: 557 LGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSAD-SLKVFDSM-EERD 614
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
I + N +I GY HG + EA+ +++ M+
Sbjct: 615 IFTWNTIITGY--------------------------AQHGLGR-----EAIRMYQLMVS 643
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
GV P+E V +L ACS + G H+F +++ D + T L++ Y+
Sbjct: 644 AGVLPNEVTFVGLLHACSHSGLVDEG---HQFF--KSMSSD-YGLTPLLEHYA------- 690
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
M++ L G A Y M I+P+ + ++L AC+
Sbjct: 691 -----------------CMVDLLGRAGDVQGAEHFIYDMP---IEPDSVIWSALLGACK- 729
Query: 331 SGLITEGCQLFRRMG-GVYRVQPT-IEHFVCLVDLLSRAGLLYQAEEFIKIM 380
I + ++ RR ++ ++P+ ++V L ++ S G+ + + K+M
Sbjct: 730 ---IHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLM 778
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H K +DS + V N+L+ Y + + D+ +FD M RD+ +WNT+++ Y
Sbjct: 568 LGQQIHTIAIKLGMDSGLVVANALVSMYFKCS-SADSLKVFDSMEERDIFTWNTIITGYA 626
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
E + +++ ++ G++ +++T V L AC+
Sbjct: 627 QHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACS 661
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 160/463 (34%), Positives = 266/463 (57%), Gaps = 2/463 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HAH+ K +L ++ ++ ++ A ++F ++ +V S+N ++ Y
Sbjct: 24 KKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHN 83
Query: 63 SDSGEVLILFKQ-LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ +F Q L + DK T + +CA L G+ VH + K G +
Sbjct: 84 HKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAIT 143
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENAL+ MY KC +M A ++++EM + R+ VS N LI+G++ + + AREVFDE+ +
Sbjct: 144 ENALIDMYTKCGDMSGAYQVYEEM-TERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRT 202
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W +M++G + +AL +F++M G+ PDE ++SVL AC+ L L+ G+ +H+
Sbjct: 203 IVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHK 262
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ ++ ++A V AL++MY+KCG ++EA F + KDV++W+TMI GLAN+G G
Sbjct: 263 YSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYA 322
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+RVF M++ G+ PN TFV VL+AC H+GL EG + F M Y ++P IEH+ CLV
Sbjct: 323 AIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLV 382
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R+G + QA + I MP + ++ +LLS+C + ++ ++KL +
Sbjct: 383 DLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLEPEESG 442
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVLL+N YA W V+ R+ ++ + +K PG S+I++ +
Sbjct: 443 NYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVNN 485
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 141/323 (43%), Gaps = 65/323 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
+G+ +HAHV K + N+LI Y + + A ++++M RD SWN+L+S
Sbjct: 124 LGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHV 183
Query: 58 -------------------------IYNDFSDSG---EVLILFKQLIFEGIVADKITLVI 89
+ N ++ G + L +F+++ GI D+I+++
Sbjct: 184 RLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVIS 243
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ ACA+L L GK +H Y+ K G + NAL+ MYAKC +DEA LF++M
Sbjct: 244 VLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQM---- 299
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
++KD++ W +M+ G + A+ +F+ M
Sbjct: 300 ----------------------------IEKDVISWSTMIGGLANHGKGYAAIRVFEDMQ 331
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
GVTP+ V VLSAC+ G R + ++ L+D+ + G +
Sbjct: 332 KAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQV 391
Query: 269 EEALVTFYKTDCK-DVVTWTTMI 290
E+AL T K + D TW +++
Sbjct: 392 EQALDTILKMPMQPDSRTWNSLL 414
>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/439 (36%), Positives = 252/439 (57%), Gaps = 3/439 (0%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N +++ Y + L +AR LFD + +DV SW T++ Y E L +++ ++ G
Sbjct: 255 NVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHG 314
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
+++ +V L SAC R + G +H K G + ++ ++ YA C MD A
Sbjct: 315 PNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQ 374
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
F E+G + ++ S N L G+I ++D A + FD++ +D+ W +M+ G +++ P+ A
Sbjct: 375 F-EVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMA 433
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
LELF KM+ G+ P+E MVSV SA ++L LQ G+L H ++ +I + ++ ALIDM
Sbjct: 434 LELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAHEYMRSESIPFNDNLRAALIDM 493
Query: 262 YSKCGSLEEALVTF--YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
Y+KCGS+ AL F + + V W +I GLA++G + L VF M+R IKPN
Sbjct: 494 YAKCGSINSALQFFNQIRDEVSSVSPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPI 553
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
TF+ VL+AC H+GL+ G ++F+ M Y V+P I+H+ C++D+L RAGLL +AEE I+
Sbjct: 554 TFIGVLSACCHAGLVESGKRIFKTMKSAYNVEPDIKHYGCMIDILGRAGLLEEAEEMIRS 613
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
MP E + + LL+AC T+ ++G++ A N+ +L VLLSN YA G W EV
Sbjct: 614 MPMEADIVIWGTLLAACRTHGNVNIGERAAENLARLAPSHGGGKVLLSNIYANAGKWEEV 673
Query: 440 AEARRNMKELQTRKKPGNS 458
+ R M+ ++PG S
Sbjct: 674 SFVRSVMQGQTMDREPGYS 692
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/480 (28%), Positives = 230/480 (47%), Gaps = 47/480 (9%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N ++ Y R +AR LFD MP + S+ T++ + E L +FK + G+V
Sbjct: 123 NIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVV 182
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
+ +TLV + SAC+ L ++ + VH K+ + ++ + L+ Y C + EA RL
Sbjct: 183 PNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGVREARRL 242
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
FDEM RN+V+ N+++NGY LVD ARE+FD I DKD++ W +M+ G ++ + EA
Sbjct: 243 FDEM-PERNLVTWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREA 301
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
LE+++ M+ G P+E ++V+++SAC + + G +H +++ F++T +I
Sbjct: 302 LEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYF 361
Query: 262 YSKC-------------------------------GSLEEALVTFYKTDCKDVVTWTTMI 290
Y+ C G ++ AL TF K +DV +W+TMI
Sbjct: 362 YAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMI 421
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
G A AL +F++M GIKPNE T VSV +A G + EG ++ Y
Sbjct: 422 SGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEG-----KLAHEYMR 476
Query: 351 QPTIEH----FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS-YKALLSACITYSEFDLG 405
+I L+D+ ++ G + A +F + E +S + A++ ++ +
Sbjct: 477 SESIPFNDNLRAALIDMYAKCGSINSALQFFNQIRDEVSSVSPWNAIICGLASHGHASMC 536
Query: 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+V ++M + + + + + H V +R K T K N D+KHY
Sbjct: 537 LEVFSDMQRFHIKPNP--ITFIGVLSACCHAGLVESGKRIFK---TMKSAYNVEPDIKHY 591
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 176/366 (48%), Gaps = 44/366 (12%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
++ LV +C+ L + G+ +H K+GL + ++N+L+ MYAKC ++ A LF
Sbjct: 52 SELALVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLF 111
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
D + + VS NI+++GY+ +D AR++FD + +K V + +M+ G V+ EAL
Sbjct: 112 DGFATLDS-VSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREAL 170
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
E+FK M GV P++ +V+V+SACS L + R+VH +++ + V T L+ Y
Sbjct: 171 EVFKDMRSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAY 230
Query: 263 SKCGSLEEA-----------LVTF-------------------YKTDC-KDVVTWTTMIE 291
C + EA LVT+ + C KDV++W TMI+
Sbjct: 231 CLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMID 290
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL----FRRMGGV 347
G G EAL ++ M + G PNE V++++AC I +G QL +R
Sbjct: 291 GYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDC 350
Query: 348 YR-VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406
Y +Q TI +F ++ A L ++ + +D S+ AL + I D
Sbjct: 351 YNFIQTTIIYFYAACGMMDLACLQFE-------VGVKDHLESWNALTAGFIKNGMMDHAL 403
Query: 407 KVANNM 412
K + M
Sbjct: 404 KTFDKM 409
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/460 (33%), Positives = 253/460 (55%), Gaps = 37/460 (8%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HAH KT L S+++V N+L+ FY +FD+ P D+ SW TL+ Y+
Sbjct: 160 IHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGY 219
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYMLNME 122
E + F ++ AD++TLV++ SAC++L GK + Y + + +
Sbjct: 220 PSEAIAAFFRM---NCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLG 276
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
NALL MY KC + LAR++F + K++
Sbjct: 277 NALLDMYLKCGQ--------------------------------PHLARQLFHLMPVKNL 304
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W SM+ G +EAL +F++M G+ PD +V VL++C++L +L+ G+ VH +
Sbjct: 305 VSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSY 364
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
I +N++ D +V AL+DMY+KCGS+++A + F CKDV ++T MI G A +G + A
Sbjct: 365 IDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRA 424
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F +M R G++P+ T V VL+AC H+GL+ EG + F+ M +Y +QP EH+ C+VD
Sbjct: 425 LAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVD 484
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL RAGL+ +AE F MP + +LL AC +++ +LG+ V ++++ + A
Sbjct: 485 LLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGA 544
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+L+SN Y+ W + + R+ MK+ +K PG S I++
Sbjct: 545 YILMSNIYSSANRWRDALKWRKAMKQNNIKKTPGCSSIEV 584
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 144/321 (44%), Gaps = 47/321 (14%)
Query: 1 MGKGLHAHVTKTALD--SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
+GK + A++ D SD+++GN+L+ Y + AR LF MP +++ SWN+++S
Sbjct: 254 LGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISG 313
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
E L +F+++ G+ D +TLV + ++CA L L GK VH Y K ++
Sbjct: 314 LAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKAD 373
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ NAL+ MYAKC +D+A +F M +++ S +I G+
Sbjct: 374 GYVANALVDMYAKCGSIDQAFMVFQAMKC-KDVYSYTAMIVGF----------------- 415
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR- 237
MHG + + AL +F +M GV PD +V VLSACS L+ GR
Sbjct: 416 ---------AMHG-----KADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRR 461
Query: 238 ----LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD-CKDVVTWTTMIEG 292
+ + LQ ++D+ + G + EA K D W +++
Sbjct: 462 HFQDMSRLYHLQPQTEHYG----CMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGA 517
Query: 293 L---ANYGLGNEALRVFYQME 310
A LG ++ +ME
Sbjct: 518 CKIHAKVELGETVIQKLIEME 538
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 5/195 (2%)
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L+++M+ G++PD + +L ACS +H ++ ++ + FVK L+
Sbjct: 123 FSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRF 182
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y+ G +E F + D+++WTT+I+ + G +EA+ F++M + T
Sbjct: 183 YAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMN---CTADRMTL 239
Query: 322 VSVLAACRHSGLITEGCQLFRRMG-GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
V VL+AC G T G ++ M ++ V + L+D+ + G + A + +M
Sbjct: 240 VVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLM 299
Query: 381 PAEDKFISYKALLSA 395
P ++ +S+ +++S
Sbjct: 300 PVKN-LVSWNSMISG 313
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/462 (33%), Positives = 256/462 (55%), Gaps = 32/462 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + K L+ + VG SL+ Y + + A+V+FDK+P ++V +W L++ Y
Sbjct: 215 VGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYA 274
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
L L +++ + +KIT + C L +GK VH Y + G +
Sbjct: 275 QQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIW 334
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MY KC + EA R++F ++ +
Sbjct: 335 VVNALITMYCKCGGLKEA--------------------------------RKLFGDLPHR 362
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ G + +EA++LF++M +G+ PD+ S L++CSS + LQ G+ +H
Sbjct: 363 DVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIH 422
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ ++ + D ++++AL+ MY+KCGS+++A + F + ++VV WT MI G A +G
Sbjct: 423 QQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCR 482
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL F QM+++GIKP++ TF SVL+AC H GL+ EG + FR M Y ++P +EH+ C
Sbjct: 483 EALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCF 542
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +AE I MP + + ALLSAC +S+ + G++ A N++KL
Sbjct: 543 VDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDD 602
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
AYV LSN YA G + + + R+ M++ K+PG S I++
Sbjct: 603 GAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEV 644
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 121/449 (26%), Positives = 221/449 (49%), Gaps = 38/449 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA + K+ + + Y+ N+L+ Y + TDAR +FD + R++ SW ++ +
Sbjct: 115 GREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVA 174
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + E ++ + G DK+T V L +A E L G+ VH K GLE +
Sbjct: 175 GNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRV 234
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MYAKC ++ +A + +FD++ +K+
Sbjct: 235 GTSLVGMYAKCGDISKA--------------------------------QVIFDKLPEKN 262
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W ++ G + Q + ALEL +KM V P++ S+L C++ L++G+ VHR
Sbjct: 263 VVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHR 322
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I+Q+ ++ +V ALI MY KCG L+EA F +DVVTWT M+ G A G +E
Sbjct: 323 YIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDE 382
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM-GGVYRVQPTIEHFVCL 360
A+ +F +M+++GIKP++ TF S L +C + EG + +++ Y + ++ L
Sbjct: 383 AIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQS--AL 440
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
V + ++ G + A M +E +++ A+++ C + + M K G +
Sbjct: 441 VSMYAKCGSMDDARLVFNQM-SERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPD 499
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKEL 449
+ V ++ + H V E R++ + +
Sbjct: 500 K--VTFTSVLSACTHVGLVEEGRKHFRSM 526
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 171/382 (44%), Gaps = 68/382 (17%)
Query: 34 FTDARVLFDKMP----FRDVGSWNTLMSIYNDFSDSGEVLILFKQ------------LIF 77
T V D++P FR V + ++SG+V IL KQ +I
Sbjct: 40 LTTPTVSHDQLPGNAGFRKV----------DTLANSGDVSILCKQGRLKEALGILNTMIL 89
Query: 78 EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDE 137
+G L CARL L G+ VH K G++ +EN LL MYAKC + +
Sbjct: 90 QGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTD 149
Query: 138 ALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ 197
A R+FD I D++IV W +M+ V Q
Sbjct: 150 ARRVFD--------------------------------GIRDRNIVSWTAMIEAFVAGNQ 177
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
EA + ++ M G PD+ VS+L+A ++ LQ G+ VH I + + + V T+
Sbjct: 178 NLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTS 237
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
L+ MY+KCG + +A V F K K+VVTWT +I G A G + AL + +M++ + PN
Sbjct: 238 LVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPN 297
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL----SRAGLLYQA 373
+ T+ S+L C + G ++ R Y +Q + +V+ L + G L +A
Sbjct: 298 KITYTSILQGCTTPLALEHGKKVHR-----YIIQSGYGREIWVVNALITMYCKCGGLKEA 352
Query: 374 EEFIKIMPAEDKFISYKALLSA 395
+ +P D +++ A+++
Sbjct: 353 RKLFGDLPHRD-VVTWTAMVTG 373
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 110/217 (50%), Gaps = 4/217 (1%)
Query: 199 EEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTAL 258
+EAL + MI +G +V +L C+ L +L+ GR VH IL++ I + +++ L
Sbjct: 78 KEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTL 137
Query: 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
+ MY+KCGSL +A F +++V+WT MIE EA + + M+ G KP++
Sbjct: 138 LSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDK 197
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGV-YRVQPTIEHFVCLVDLLSRAGLLYQAEEFI 377
TFVS+L A + L+ G ++ + ++P + LV + ++ G + +A+
Sbjct: 198 VTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TSLVGMYAKCGDISKAQVIF 255
Query: 378 KIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+P E +++ L++ + D+ ++ M +
Sbjct: 256 DKLP-EKNVVTWTLLIAGYAQQGQVDVALELLEKMQQ 291
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 162/463 (34%), Positives = 254/463 (54%), Gaps = 34/463 (7%)
Query: 2 GKGLHAHVTKTALDS-DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +HA KT + ++YV N+L+ Y D + +FD+ P RD+ SW TL+ +
Sbjct: 129 GQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFT 188
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYML 119
+ F ++ + AD TLV++ SAC+ L L+ G+ VH Y + ++ +
Sbjct: 189 KAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADV 248
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NALL MY KC +++ A + VFDE+
Sbjct: 249 FVGNALLDMYLKCDDLNSAYK--------------------------------VFDEMPV 276
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K++V W +M+ G + EAL+ F+ M D+GV PDE +V VL++C++L L+ G+ V
Sbjct: 277 KNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWV 336
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ +N+I D FV AL+DMY+KCGS++EA F +DV ++T MI GLA +G
Sbjct: 337 HAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEA 396
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
N A +VF +M R GI+PNE TF+ +L AC H GL+ EG + F +M Y+++P EH+ C
Sbjct: 397 NWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGC 456
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
++DLL RAGL+ +AEE I M + ALL AC + D+G+ V + +L
Sbjct: 457 MIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELDPDE 516
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+L++N Y+ W + + R+ MK + RK PG S+I++
Sbjct: 517 EGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEV 559
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 179/388 (46%), Gaps = 42/388 (10%)
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL-EYMLNMENALLLMY 129
+++ G+ D T+ ++ A A ++ + G+ +H + K G+ + + + N L+ +Y
Sbjct: 97 FLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLY 156
Query: 130 AKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMM 189
+ C + + ++FDE R++VS LI +
Sbjct: 157 SVCGSIHDVQKVFDEC-PHRDLVSWTTLIQAF---------------------------- 187
Query: 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NI 248
KA A+E F +M D + D +V VLSACS+L +L G+ VH +I ++
Sbjct: 188 ---TKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDM 244
Query: 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
D FV AL+DMY KC L A F + K+VVTW MI GLA G EAL F
Sbjct: 245 KADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRM 304
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSR 366
M+ KG+KP+E T V VL +C + G++ G + M R + FV L+D+ ++
Sbjct: 305 MQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYM---RRNHILADKFVGNALLDMYAK 361
Query: 367 AGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLL 426
G + +A + M D + SY A++ + E + +V + M ++G + +E L
Sbjct: 362 CGSIDEAFRVFESMKRRDVY-SYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFL- 419
Query: 427 SNFYALEGHWTEVAEARRNMKELQTRKK 454
H VAE ++ ++ + K
Sbjct: 420 -GLLMACSHGGLVAEGKKYFFQMSDKYK 446
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 85/185 (45%), Gaps = 7/185 (3%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA++ + + +D +VGN+L+ Y + +A +F+ M RDV S+ ++
Sbjct: 332 IGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLA 391
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ +F ++ GI +++T + L AC+ + GK Y ++ +Y L
Sbjct: 392 LHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKK---YFFQMSDKYKLR 448
Query: 121 ME----NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ ++ + + + EA + +M R ++ + L+ VD+ V +
Sbjct: 449 PQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQK 508
Query: 177 IVDKD 181
+ + D
Sbjct: 509 LTELD 513
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/451 (34%), Positives = 255/451 (56%), Gaps = 2/451 (0%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFK 73
L+ ++ N++I Y + + +A+ LF KMP ++ SW +++ + +S E L L
Sbjct: 485 LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLI 544
Query: 74 QLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
+L G V + SACA + + G+ +H A K G ++ + N L+ MYAKC
Sbjct: 545 ELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCG 604
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
+++ +F + ++ VS N LI+G + ++D AR VF+++ +D+V W +++ V
Sbjct: 605 NVEDGSHVFRTI-RVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYV 663
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+A E AL+LF M+ G+ P++ + S+LSAC +L ++ G H I + F
Sbjct: 664 QAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLF 723
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
V +LI MY KCG E+ F + D++TW ++ G A GLG EA+++F QME +G
Sbjct: 724 VGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEG 782
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
I P++ +F+ VL AC H+GL+ EG F M Y + P + H+ C+VDLL RAG L +A
Sbjct: 783 ILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEA 842
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE 433
E I+ MP + + ++ALL AC + +LG++VA + ++ YVLLSN +A +
Sbjct: 843 EALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQ 902
Query: 434 GHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
G W +VAE R+ MK+ K+PG S I +K+
Sbjct: 903 GMWDKVAEIRKLMKDQGLTKEPGISWIQVKN 933
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 198/393 (50%), Gaps = 21/393 (5%)
Query: 10 TKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVL 69
K + ++ N+ I GR+ +AR +F++M RDV SWN+++ N +S +G+V
Sbjct: 163 NKETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMI---NGYSQNGKVD 219
Query: 70 ILFKQLIFEGIVADKI-TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
+L+F+ V I T IL + A+ ++ + V T E + NA++
Sbjct: 220 E--ARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMT----ERNVVSWNAMISG 273
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
Y + ++ A +LFDEM +N+ S N ++ GY + ARE+FD++ +++ V W M
Sbjct: 274 YVQNGDLKNARKLFDEM-PEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVM 332
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ G V EA ++F KM PD+ + V VLSA + L +L+ + ++
Sbjct: 333 ISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGY 392
Query: 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
D V +A+++ Y++ GSL+ A+ F ++ +WTTMI A G ++A++++ +
Sbjct: 393 EGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYER 452
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
+ + + AT +++ A G I + +F + + P + + ++ ++ G
Sbjct: 453 VPEQTV----ATKTAMMTAYAQVGRIQKARLIFDEI-----LNPNVVAWNAIIAGYTQNG 503
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
+L +A++ + MP ++ S+ A+++ + E
Sbjct: 504 MLKEAKDLFQKMPVKNS-ASWAAMIAGFVQNEE 535
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 140/321 (43%), Gaps = 42/321 (13%)
Query: 7 AHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSG 66
+HV +T D NSLI + DARV+F+KMP RDV SW ++S Y
Sbjct: 610 SHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGE 669
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
L LF ++ GI +++T+ L SAC L + G+ H K+G + L + N+L+
Sbjct: 670 VALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLI 729
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
MY KC GY D VF+E+ + D++ W
Sbjct: 730 TMYFKC---------------------------GYED------GFCVFEEMPEHDLITWN 756
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
+++ GC + +EA+++F++M EG+ PD+ + VL ACS + G + Q
Sbjct: 757 AVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQK 816
Query: 247 -NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL---ANYGLGNE 301
I + T ++D+ + G L EA K D V W ++ N LG
Sbjct: 817 YGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQR 876
Query: 302 ALRVFYQMERKGIKPNEATFV 322
+QM KP AT+V
Sbjct: 877 VAERLFQM----TKPKSATYV 893
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 96/414 (23%), Positives = 178/414 (42%), Gaps = 73/414 (17%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ ++ NS++ Y ++AR LFD+MP R+ SW ++S Y SD E +F +
Sbjct: 292 EKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVK 351
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+ D+ V++ SA L+ L ++ A K G E
Sbjct: 352 MCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYE------------------ 393
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
++V + ++N Y +DLA F+ + +++ W +M+ +
Sbjct: 394 --------------GDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQ 439
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+ ++A++L++++ ++ V ++++A + + +Q RL+ IL N+
Sbjct: 440 CGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRIQKARLIFDEILNPNVV----A 491
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
A+I Y++ G L+EA F K K+ +W MI G EAL + ++ R G
Sbjct: 492 WNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGS 551
Query: 315 KPNEATFVSVLAACR-----------HSGLITEGCQ-----------LFRRMGGV----- 347
P++++F S L+AC HS I GCQ ++ + G V
Sbjct: 552 VPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSH 611
Query: 348 ----YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
RV+ T+ + L+ LS +L A + MP D +S+ A++SA +
Sbjct: 612 VFRTIRVKDTVS-WNSLISGLSENYMLDDARVVFEKMPKRD-VVSWTAIISAYV 663
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ HA + K D+ ++VGNSLI Y + + D +F++MP D+ +WN ++
Sbjct: 705 LGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCA 763
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
E + +F+Q+ EGI+ D+++ + + AC+
Sbjct: 764 QNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACS 798
>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Glycine max]
Length = 854
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 170/461 (36%), Positives = 246/461 (53%), Gaps = 37/461 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H H+ ++ N LI+ Y + L +A+VLFDKMP R+V SW T++S Y++
Sbjct: 304 GKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSN 363
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + L + +G++ + T + AC RL L K +H + KVGLE + +
Sbjct: 364 AQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL---KQLHSWIMKVGLESDVFV 420
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+AL+ +Y+K E+ EAL++F EM + D
Sbjct: 421 RSALIDVYSKMGELLEALKVFREM--------------------------------MTGD 448
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V+W S++ + +EAL L+K M G D+ + SVL AC+SLS L+ GR H
Sbjct: 449 SVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHV 508
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+L+ QD + AL+DMY KCGSLE+A F + KDV++W+TMI GLA G E
Sbjct: 509 HVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSME 566
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M+ +G KPN T + VL AC H+GL+ EG FR M +Y + P EH+ C++
Sbjct: 567 ALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCML 626
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RA L + I M E ++++ LL AC DL A ++KL Q
Sbjct: 627 DLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTG 686
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
AYVLLSN YA+ W +VAE RR MK+ RK+PG S I++
Sbjct: 687 AYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEV 727
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 26/240 (10%)
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
S+++ C + P A+ + M GV D ++ C + ++ G+ VHR I N
Sbjct: 256 SLLNHCYRRDLPS-AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSN 314
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
F+ LI+MY K LEEA V F K ++VV+WTTMI +N L + A+R+
Sbjct: 315 GYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLL 374
Query: 307 YQMERKGIKPNEATFVSVLAACR--------HSGLITEGCQ--LFRRMGGVYRVQPTIEH 356
M R G+ PN TF SVL AC HS ++ G + +F R
Sbjct: 375 AFMFRDGVMPNMFTFSSVLRACERLYDLKQLHSWIMKVGLESDVFVRSA----------- 423
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L+D+ S+ G L +A + + M D + + ++++A +S+ D + +M ++G
Sbjct: 424 ---LIDVYSKMGELLEALKVFREMMTGDSVV-WNSIIAAFAQHSDGDEALHLYKSMRRVG 479
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 259/460 (56%), Gaps = 33/460 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
HAH+ K LDSD +V NSLI Y LF A LFD +DV +W ++ +
Sbjct: 125 FHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGS 184
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLNMEN 123
+ E ++ F ++ G+ A+++T+V + A ++E + +G++VH + G ++ + + +
Sbjct: 185 ASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGS 244
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
+L+ MY KC D+A ++VFDE+ +++V
Sbjct: 245 SLVDMYGKCSCYDDA--------------------------------QKVFDEMPSRNVV 272
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W +++ G V+++ ++ + +F++M+ V P+E+ + SVLSAC+ + L GR VH ++
Sbjct: 273 TWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYM 332
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++N+I + T LID+Y KCG LEEA++ F + K+V TWT MI G A +G +A
Sbjct: 333 IKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAF 392
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
+FY M + PNE TF++VL+AC H GL+ EG +LF M G + ++ +H+ C+VDL
Sbjct: 393 DLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMVDL 452
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
R GLL +A+ I+ MP E + + AL +C+ + +++LGK A+ ++KL Y
Sbjct: 453 FGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRY 512
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
LL+N Y+ +W EVA R+ MK+ Q K PG S I++K
Sbjct: 513 TLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 138/275 (50%), Gaps = 40/275 (14%)
Query: 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +H +T + D+++G+SL+ YG+ + + DA+ +FD+MP R+V +W L++ Y
Sbjct: 223 GRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYV 282
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ +++F++++ + ++ TL + SACA + LH G+ VHCY K +E
Sbjct: 283 QSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTT 342
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
L+ +Y KC ++EA+ +F+ + +N+ + +ING+
Sbjct: 343 AGTTLIDLYVKCGCLEEAILVFERL-HEKNVYTWTAMINGF------------------- 382
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
HG + +A +LF M+ V+P+E ++VLSAC+ ++ GR
Sbjct: 383 -------AAHGYAR-----DAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGR--- 427
Query: 241 RFIL----QNNITQDAFVKTALIDMYSKCGSLEEA 271
R L + N+ A ++D++ + G LEEA
Sbjct: 428 RLFLSMKGRFNMELKADHYACMVDLFGRKGLLEEA 462
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 164/464 (35%), Positives = 262/464 (56%), Gaps = 4/464 (0%)
Query: 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+G+H K + + VGN+L+HFY AR LFD+MP RDV SW TL+ Y
Sbjct: 159 GEGVHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYA 218
Query: 61 DFSDSGEVLILF-KQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ E +F + ++ G+ +++TLV + SA ++ L +G+ V+ Y G+ +
Sbjct: 219 RRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSV 278
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N+ENAL+ M+ K A +FD M + +++ S ++N Y ++ A +FD++
Sbjct: 279 NLENALIDMFGKFGCAASAREVFDSM-AVKDVYSWTTMVNAYAKCGDLESAARLFDDMPR 337
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
++ V W M+ +A QPEEA+ LFK MI+EGV P +VSVLSAC+ L L GR +
Sbjct: 338 RNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWI 397
Query: 240 H-RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+ +++ + A ID+Y+KCG + A F + ++VV+W +MI A +G
Sbjct: 398 YDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQ 457
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
E LR+F Q++ I P+E TF+ +L+AC HSGL++EG + F+ M +Y ++P EH+
Sbjct: 458 SEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYA 517
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C++DLL + GLL +A E K MP E + ALL+AC Y ++G+ A+ +++L
Sbjct: 518 CMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNVEIGEFAADKLVQLNPL 577
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVL+S YA + W +V R M+E +K PG S I++
Sbjct: 578 DSGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKNPGCSSIEV 621
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 122/455 (26%), Positives = 189/455 (41%), Gaps = 89/455 (19%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWN-----TLMSIY 59
LHA +T + L + + + L+ F AL T RV + N T+M +
Sbjct: 56 LHALLTVSGLAAHRFPASRLLAF---CALSTPPRVDHAAAILARASAPNAYMLATMMRAF 112
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHY---GKTVHCYATKVG-L 115
LF+++I E + AD TLV A A + H G+ VHC A K G +
Sbjct: 113 LRARLPSRASALFRRVIRESLPADARTLVFAIKAAASEHEHHSPSGGEGVHCVALKWGHV 172
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ + NAL+ YA + + A LFDEM R++VS L++GY L D A VF
Sbjct: 173 AQSVLVGNALVHFYANHRSLAHARNLFDEM-PDRDVVSWTTLVDGYARRGLADEAWRVFC 231
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
+V + G+ P+E +V+V+SA + L +
Sbjct: 232 RMV------------------------------VAGGLQPNEVTLVAVVSAMGQMGLLAF 261
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
GR+V+R++ + + ++ ALIDM+ K G A F KDV +WTTM+ A
Sbjct: 262 GRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAK 321
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
G A R+F M R+ N ++ ++AA + E +LF+ M IE
Sbjct: 322 CGDLESAARLFDDMPRR----NAVSWSCMIAAYSQANQPEEAVRLFKAM---------IE 368
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN---- 411
V ++ AGL+ ++LSAC DLG+ + +N
Sbjct: 369 EGVEPIN----AGLV--------------------SVLSACAQLGCLDLGRWIYDNYVIS 404
Query: 412 -----MMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
+ LGN + Y +F A + E+AE
Sbjct: 405 GKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAE 439
>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 656
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 162/445 (36%), Positives = 253/445 (56%), Gaps = 4/445 (0%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
+S++ +GR + +AR +FD RD+ +W ++S + E L +F + E
Sbjct: 204 SSMVSLFGRRGMVDEARRVFDAAECRDIFTWTAMISCFERNDMFAEALHVFSCMRRERWH 263
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
D+ +V + SACA+ E + G+ H + GL +N++NAL+ MY+ C ++ A RL
Sbjct: 264 VDEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLCSQVNVQNALIHMYSSCLDVFAARRL 323
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
FD G + S N +I GY+ V A +F + +KD V W +++ GCV+ Q +A
Sbjct: 324 FDS-GECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDA 382
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L +F M +G+ PDE +VSV+SAC++LS L+ G+ VH +I QN + T+LI+M
Sbjct: 383 LTVFDNMQAQGIRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSLINM 442
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK-PNEAT 320
Y KCG LE AL F + K W +I GLA GL ++L +F +ME PNE T
Sbjct: 443 YMKCGCLEAALEAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEASDTATPNEIT 502
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
F VL+ACRH+GL+ EG F+ M Y++ P I H+ C+VDLL RAG + +AE+ I+ M
Sbjct: 503 FTGVLSACRHAGLVDEGRHFFKLMQHRYQIVPNIRHYGCMVDLLGRAGYVKEAEDMIQSM 562
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY-VLLSNFYALEGHWTEV 439
P ++ ALL AC + E+++G++V ++ + H+ + +LSN YA EG W V
Sbjct: 563 PMSPDVPAWGALLGACWKHGEYEVGERVGRKLVNR-DPLHDGFQTMLSNIYAKEGMWQSV 621
Query: 440 AEARRNMKELQTRKKPGNSIIDLKH 464
+ R +MK+ +K G+S++ H
Sbjct: 622 DDLRGSMKQRHVQKVSGHSVVKSSH 646
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 111/408 (27%), Positives = 174/408 (42%), Gaps = 88/408 (21%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + L +D + + R+ LFT A L +PF L+ N FS
Sbjct: 23 IHAQFIASGLLADAFAAS-------RLLLFTSASRLL-PLPFHHSLRLLRLVRYPNAFSC 74
Query: 65 SGEVLILFKQLIFEGIV-------------ADKITLVILFSACARLEKLHYGKTVHCYAT 111
+ L K + G+ D T IL +ACA + + G+ VH +A
Sbjct: 75 N----TLLKSALIGGMPHLCLPLYASLPAPPDSYTHPILAAACASRKDVIEGRQVHAHAV 130
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI---DME--- 165
G L + NAL+ MY+ C + +A R+FD G + VS N ++ Y+ D++
Sbjct: 131 SHGFGDNLYLRNALIFMYSACGCLWDARRVFDA-GPVWDAVSWNTILAAYVHAGDVDQAV 189
Query: 166 -------------------------LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
+VD AR VFD +DI W +M+ + E
Sbjct: 190 EVFAQMPKRNATAVSSMVSLFGRRGMVDEARRVFDAAECRDIFTWTAMISCFERNDMFAE 249
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
AL +F M E DE +MVSV+SAC+ +Q G++ H +++ + V+ ALI
Sbjct: 250 ALHVFSCMRRERWHVDEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLCSQVNVQNALIH 309
Query: 261 MYSKC-------------------------------GSLEEALVTFYKTDCKDVVTWTTM 289
MYS C G +++A+ F KD V+W+T+
Sbjct: 310 MYSSCLDVFAARRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTV 369
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
I G ++AL VF M+ +GI+P+E T VSV++AC + + +G
Sbjct: 370 ISGCVQNNQSSDALTVFDNMQAQGIRPDEVTIVSVISACTNLSALEKG 417
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 121/288 (42%), Gaps = 43/288 (14%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D Y NS+I Y + DA LF MP +D SW+T++S + S + L +F +
Sbjct: 331 DQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALTVFDNMQ 390
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+GI D++T+V + SAC L L GK+VH Y + L + +L+ MY KC ++
Sbjct: 391 AQGIRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSLINMYMKCGCLE 450
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
AL E F+ + +K W +++ G
Sbjct: 451 AAL--------------------------------EAFNIMEEKGTPCWNAVIVGLAMNG 478
Query: 197 QPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQNNITQ 250
++L++F +M + TP+E VLSAC + GR + HR+ + NI
Sbjct: 479 LVMKSLDMFSEMEASDTATPNEITFTGVLSACRHAGLVDEGRHFFKLMQHRYQIVPNIRH 538
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTD-CKDVVTWTTMIEGLANYG 297
++D+ + G ++EA DV W ++ +G
Sbjct: 539 ----YGCMVDLLGRAGYVKEAEDMIQSMPMSPDVPAWGALLGACWKHG 582
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 7/144 (4%)
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
P L L+ + PD + +AC+S ++ GR VH + + + +++ A
Sbjct: 87 PHLCLPLYASL---PAPPDSYTHPILAAACASRKDVIEGRQVHAHAVSHGFGDNLYLRNA 143
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LI MYS CG L +A F D V+W T++ + G ++A+ VF QM ++ N
Sbjct: 144 LIFMYSACGCLWDARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVEVFAQMPKR----N 199
Query: 318 EATFVSVLAACRHSGLITEGCQLF 341
S+++ G++ E ++F
Sbjct: 200 ATAVSSMVSLFGRRGMVDEARRVF 223
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 162/460 (35%), Positives = 254/460 (55%), Gaps = 1/460 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH K A D +V + Y AR +FD+M RDV +WNT++ Y
Sbjct: 130 GMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCR 189
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
F E LF+++ ++ D++ L + SAC R + Y + ++ + + + ++
Sbjct: 190 FGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHL 249
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYA MD A F +M S RN+ +++GY +D A+ +FD+ KD
Sbjct: 250 LTALVTMYAGAGCMDMAREFFRKM-SVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKD 308
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ V++ P+EAL +F++M G+ PD M SV+SAC++L L + VH
Sbjct: 309 LVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHS 368
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I N + + + ALI+MY+KCG L+ F K ++VV+W++MI L+ +G ++
Sbjct: 369 CIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASD 428
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F +M+++ ++PNE TFV VL C HSGL+ EG ++F M Y + P +EH+ C+V
Sbjct: 429 ALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMV 488
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL RA LL +A E I+ MP + + +L+SAC + E +LGK A +++L
Sbjct: 489 DLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDG 548
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
A VL+SN YA E W +V RR M+E K+ G S ID
Sbjct: 549 ALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRID 588
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 14/226 (6%)
Query: 170 AREVFDEIVDK-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS 228
A VF I + +++ + ++ +P + ++++ G D+ + +L A S
Sbjct: 63 ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
+S L G +H + D FV+T +DMY+ CG + A F + +DVVTW T
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
MIE +GL +EA ++F +M+ + P+E ++++AC +G + R +Y
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNM-------RYNRAIY 235
Query: 349 R------VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
V+ LV + + AG + A EF + M + F+S
Sbjct: 236 EFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVS 281
>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1582
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 180/535 (33%), Positives = 273/535 (51%), Gaps = 72/535 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V ++ LD + VGN LI+ Y + + AR +F +M D+ SWNT++S
Sbjct: 924 LGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCA 983
Query: 61 DFSDSGEVLI-LFKQLIFEGIVADKITLVILFSACARLEK-LHYGKTVHCYATKVGLEYM 118
S E + +F L+ G++ D+ T+ + AC+ L H +H A K G+
Sbjct: 984 -LSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLD 1042
Query: 119 LNMENALLLMYAKCKEMDEA-------------------------------LRLF---DE 144
+ L+ +Y+K +M+EA LRL+ E
Sbjct: 1043 SFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQE 1102
Query: 145 MGSRRNIVSLN-------------------------------ILINGYIDMEL----VDL 169
G R N ++L +I+G +DM L ++
Sbjct: 1103 SGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMES 1162
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
AR +F+EI D V W +M+ GCV+ Q E AL + M V PDE +++ ACS
Sbjct: 1163 ARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSL 1222
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
L+ L+ GR +H ++ N D FV T+L+DMY+KCG++E+A F +T+ + +W M
Sbjct: 1223 LTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAM 1282
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I GLA +G EAL+ F +M+ +G+ P+ TF+ VL+AC HSGL++E + F M +Y
Sbjct: 1283 IVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYG 1342
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
++P IEH+ CLVD LSRAG + +AE+ I MP E Y+ LL+AC + + GK+VA
Sbjct: 1343 IEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVA 1402
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
++ L AYVLLSN YA W VA AR M++ +K PG S +DLK+
Sbjct: 1403 EKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKN 1457
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 124/473 (26%), Positives = 219/473 (46%), Gaps = 59/473 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSI 58
+GK HA + + D ++ N+LI Y + + AR LFD P RD+ +WN ++S
Sbjct: 644 LGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSA 703
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ D + G LF+ L + A + TL +F C +++H YA K+GL++
Sbjct: 704 HADKARDG--FHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWD 761
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID--------------- 163
+ + AL+ +YAK + EA LFD MG R++V N+++ Y+D
Sbjct: 762 VFVAGALVNIYAKFGRIREARVLFDGMG-LRDVVLWNVMMKAYVDTGLEYEALLLFSEFN 820
Query: 164 --------MELVDLAREVFDE------------------------IVDKDIVLWRSMMHG 191
+ L LAR V + D++ W +
Sbjct: 821 RTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSW 880
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
++ + EA++ F MI+ V D V +LS + L+ L+ G+ +H ++++ + Q
Sbjct: 881 FLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQV 940
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
V LI+MY K GS+ A F++ + D+V+W TMI G A GL ++ +F + R
Sbjct: 941 VSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLR 1000
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG-VYRVQPTIEHFVC--LVDLLSRAG 368
G+ P++ T SVL AC G GC L ++ + ++ FV L+D+ S++G
Sbjct: 1001 GGLLPDQFTVASVLRACSSLG---GGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSG 1057
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
+ +A EF+ + S+ A++ I +F ++ M + G ++++
Sbjct: 1058 KMEEA-EFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQ 1109
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD-- 279
S+L + S+L G+ H IL + D F+ LI MYSKCGSL A F T
Sbjct: 631 SILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDT 690
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
+D+VTW ++ A+ + +F + R + T V C
Sbjct: 691 SRDLVTWNAILSAHADK--ARDGFHLFRLLRRSFVSATRHTLAPVFKMC 737
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 169/462 (36%), Positives = 263/462 (56%), Gaps = 1/462 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ + H K +S ++V N+LIH Y A+ +FD M RDV SWN+++ Y
Sbjct: 132 GQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQ 191
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
F+ +VL LF+++ + AD +T++ SA L + G + Y + G+ L +
Sbjct: 192 FNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYL 251
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L+ MY + +D A R+F +M +NIVS N +I GY + + A+++F+E+ +D
Sbjct: 252 GNTLIDMYGRRGMIDFAGRVFYQM-KEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRD 310
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W SM+ G AKQ EA++LF++M+ V PDE + + LSAC+ L +L G VH
Sbjct: 311 VISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHD 370
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +++I D FV +LIDMY KCG +E+AL F +D V+WT++I GLA G
Sbjct: 371 YIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAES 430
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL VF QM ++GI P TFV VL AC H GL+ +G + F+ M YR+ P ++H+ C+V
Sbjct: 431 ALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVV 490
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R+G L A FIK MP + ++ LLSAC + L + V+ ++ L ++
Sbjct: 491 DLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNG 550
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVL S+ YA W +V + R+ M+ +K S I+++
Sbjct: 551 NYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEVR 592
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/446 (22%), Positives = 192/446 (43%), Gaps = 66/446 (14%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLI-HFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LHA + + + D + +I H+ A +F+++ + WN ++ +
Sbjct: 31 KELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSK 90
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + + + ++GI +T + LF +CAR+ + G+ V ++ K+G E L +
Sbjct: 91 SDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESYLFV 150
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY E+ A ++FD M R++VS N +I GY
Sbjct: 151 SNALIHMYVCFGELAMAQKVFDGM-LERDVVSWNSIICGYYQFN---------------- 193
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ ++ L+LF++M V D M+ +SA LS + G + +
Sbjct: 194 ---------------RFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVK 238
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG---- 297
+I ++ + D ++ LIDMY + G ++ A FY+ K++V+W MI G A G
Sbjct: 239 YIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVA 298
Query: 298 ---LGN------------------------EALRVFYQMERKGIKPNEATFVSVLAACRH 330
L N EA+++F +M +KP+E T + L+AC H
Sbjct: 299 AKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAH 358
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
G + G + + + ++ + L+D+ + G++ +A + M D +S+
Sbjct: 359 LGSLDAGEAVHDYIRK-HDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDS-VSWT 416
Query: 391 ALLSACITYSEFDLGKKVANNMMKLG 416
+++S + V + M+K G
Sbjct: 417 SIISGLAVNGFAESALNVFDQMLKEG 442
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 142/331 (42%), Gaps = 67/331 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMAL--------------------------- 33
MG L ++ + + D+Y+GN+LI YGR +
Sbjct: 232 MGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYA 291
Query: 34 ----FTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
A+ LF++MP RDV SW +++ Y+ E + LF++++ + D+IT+
Sbjct: 292 KVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVAT 351
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
SACA L L G+ VH Y K ++ + + N+L+ MY KC +++AL++F++M +R
Sbjct: 352 ALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTR- 410
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D V W S++ G E AL +F +M+
Sbjct: 411 -------------------------------DSVSWTSIISGLAVNGFAESALNVFDQML 439
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK--TALIDMYSKCGS 267
EG+ P V VL AC+ + + G + H ++N +K ++D+ + G
Sbjct: 440 KEGICPTHGTFVGVLLACAHVGLVDKG-VEHFKSMENTYRLAPEMKHYGCVVDLLCRSGY 498
Query: 268 LEEALVTFYKTD-CKDVVTWTTMIEGLANYG 297
L+ A K DVV W ++ +G
Sbjct: 499 LDMAYNFIKKMPIVPDVVIWRILLSACKLHG 529
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 160/453 (35%), Positives = 261/453 (57%), Gaps = 4/453 (0%)
Query: 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +H K + + VGN+L+HFY DA +FD+MP RDV SW TL+ Y
Sbjct: 161 GEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYA 220
Query: 61 DFSDSGEVLILF-KQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ E LF + ++ G+ + +TLV SA ++ L +G +H Y T+ G+ +
Sbjct: 221 RAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSV 280
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N++NAL+ M+ KC + A +FD M +++ S ++N Y ++ A ++F ++
Sbjct: 281 NLDNALVDMFGKCGCVRYAREVFDGM-EVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPR 339
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+++V W M+ + QPEEA+ LF++MI GV P + +VSVLSAC+ L L GR +
Sbjct: 340 RNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWI 399
Query: 240 HR-FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+ +I+ N I + ALIDM++KCG + EA F + ++VV+W TMI A +G
Sbjct: 400 YENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQ 459
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EA+R+F Q++ + I P++ TF+ +LA+C HSGL++EG + F+ M YR++P +EH+
Sbjct: 460 SEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYA 519
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C++DLL + GLL +A E + MP E + ALL+AC + ++G VA+ +++L
Sbjct: 520 CMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPS 579
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451
YVL+S YA + W +V R M++ T
Sbjct: 580 DSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGT 612
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 123/238 (51%), Gaps = 14/238 (5%)
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY------GRLVH 240
+MM G ++A+ P AL LF++++ + + D V + A ++ + ++ G +H
Sbjct: 106 TMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIH 165
Query: 241 RFILQNN-ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
L+ + + V AL+ Y+ SL++A F + +DVV+WTT+++G A GL
Sbjct: 166 CAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLA 225
Query: 300 NEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM--GGVYRVQPTIEH 356
+EA R+F +M G++PN T V+ ++A GL+ G L + + GGV R ++
Sbjct: 226 DEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVAR---SVNL 282
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
LVD+ + G + A E M +D + S+ ++++A + + +++ +M +
Sbjct: 283 DNALVDMFGKCGCVRYAREVFDGMEVKDVY-SWTSMVNAYAKCGDLESAEQLFKDMPR 339
>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1611
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 168/460 (36%), Positives = 240/460 (52%), Gaps = 32/460 (6%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA K + D +V +LI Y + +A LF D+ SWN +M Y D
Sbjct: 1059 IHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGD 1118
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ L L+ + G +D+ITLV A L L GK +H K G L + +
Sbjct: 1119 FPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSG 1178
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
+L MY KC EM+ A R VF EI D V
Sbjct: 1179 VLDMYLKCGEMESA--------------------------------RRVFSEIPSPDDVA 1206
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ GCV+ Q E AL + +M V PDE +++ ACS L+ L+ GR +H I+
Sbjct: 1207 WTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIV 1266
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ N D FV T+L+DMY+KCG++E+A F +T+ + + +W MI GLA +G EAL+
Sbjct: 1267 KLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQ 1326
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
F M+ +G+ P+ TF+ VL+AC HSGL++E + F M Y ++P IEH+ CLVD L
Sbjct: 1327 FFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDAL 1386
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
SRAG + +AE+ I MP E Y+ LL+AC + + GK+VA ++ L AYV
Sbjct: 1387 SRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYV 1446
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
LLSN YA W VA AR M+++ +K PG S +DLK+
Sbjct: 1447 LLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKN 1486
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 119/445 (26%), Positives = 205/445 (46%), Gaps = 59/445 (13%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ LH + K L D++V +L++ Y + L +ARVLFD M RDV WN +M Y D
Sbjct: 780 ESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDT 839
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
E ++LF + G D +TL L + + K YATK+ +M + +
Sbjct: 840 CLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKL---FMYDDD 896
Query: 123 NALLLMYAKC-------KEMDEALRLFDEMGSRR-------------------------- 149
+ ++++ K E EA+ F +M + R
Sbjct: 897 GSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQ 956
Query: 150 -----------NIVSL-NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ 197
+VS+ N LIN Y+ V AR VF ++ + D++ W +M+ GC +
Sbjct: 957 IHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGL 1016
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY-GRLVHRFILQNNITQDAFVKT 256
E ++ +F ++ + + PD+ + SVL ACSSL Y +H ++ + D+FV T
Sbjct: 1017 EECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVST 1076
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
ALID+YSK G +EEA F D D+ +W ++ G G +ALR++ M+ G +
Sbjct: 1077 ALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERS 1136
Query: 317 NEATFVSVLAACRHSGLI--TEGCQLFRRMGGVYRVQPTIEHFVC--LVDLLSRAGLLYQ 372
++ T V+ A GL+ +G Q+ V + ++ FV ++D+ + G +
Sbjct: 1137 DQITLVNAAKAA--GGLVGLKQGKQIH---AVVVKRGFNLDLFVTSGVLDMYLKCGEMES 1191
Query: 373 AEEFIKIMPAEDKFISYKALLSACI 397
A +P+ D +++ ++S C+
Sbjct: 1192 ARRVFSEIPSPDD-VAWTTMISGCV 1215
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 119/470 (25%), Positives = 214/470 (45%), Gaps = 54/470 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSI 58
+GK HA + + D +V N+LI Y + + AR LFD P RD+ +WN ++S
Sbjct: 674 LGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSA 733
Query: 59 YNDFSD-SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+D S + LF+ L + + TL +F C +++H YA K+GL++
Sbjct: 734 LAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQW 793
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID-------------- 163
+ + AL+ +YAK + EA LFD M + R++V N+++ Y+D
Sbjct: 794 DVFVAGALVNIYAKFGLIREARVLFDGM-AVRDVVLWNVMMKAYVDTCLEYEAMLLFSEF 852
Query: 164 ---------MELVDLAREV-----------FDEIVDK---------DIVLWRSMMHGCVK 194
+ L L+R V F K D+++W + ++
Sbjct: 853 HRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQ 912
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+ EA++ F MI+ V D V +L+ + L+ L+ G+ +H ++++ + Q V
Sbjct: 913 RGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSV 972
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
LI+MY K GS+ A F + + D+++W TMI G GL ++ +F + R +
Sbjct: 973 GNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSL 1032
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGG-VYRVQPTIEHFV--CLVDLLSRAGLLY 371
P++ T SVL AC + G L ++ + ++ FV L+D+ S+ G +
Sbjct: 1033 LPDQFTVASVLRACSS---LEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKME 1089
Query: 372 QAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
+A EF+ + S+ A++ I +F ++ M + G +S +
Sbjct: 1090 EA-EFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQ 1138
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 118/272 (43%), Gaps = 35/272 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA V K + D++V + ++ Y + AR +F ++P D +W T++S +
Sbjct: 1157 GKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVE 1216
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L + Q+ + D+ T L AC+ L L G+ +H K+ + +
Sbjct: 1217 NGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFV 1276
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MYAKC +++A LF +RR
Sbjct: 1277 MTSLVDMYAKCGNIEDARGLFKRTNTRR-------------------------------- 1304
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
I W +M+ G + +EAL+ FK M GV PD + VLSACS S L +
Sbjct: 1305 IASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSH-SGLVSEAYENF 1363
Query: 242 FILQNNITQDAFVK--TALIDMYSKCGSLEEA 271
+ +Q N + ++ + L+D S+ G +EEA
Sbjct: 1364 YSMQKNYGIEPEIEHYSCLVDALSRAGRIEEA 1395
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 11/186 (5%)
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD-- 279
S+L + S+L G+ H IL + D FV LI MY+KCGSL A F T
Sbjct: 661 SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720
Query: 280 CKDVVTWTTMIEGLANYG-LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338
+D+VTW ++ LA + ++ +F + R + T V C S +
Sbjct: 721 NRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASE 780
Query: 339 QLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKF---ISYKALL 393
L G ++ + FV LV++ ++ GL+ +A M D + KA +
Sbjct: 781 SLH---GYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYV 837
Query: 394 SACITY 399
C+ Y
Sbjct: 838 DTCLEY 843
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 161/461 (34%), Positives = 253/461 (54%), Gaps = 32/461 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HAH+ ++ SD+ V +L Y + F DAR +F+ + +RDV +WNT++ + D
Sbjct: 249 GKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVD 308
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E F +++ EG+ D+ T + SACAR L GK +H A K GL +
Sbjct: 309 SGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRF 368
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY+K M +A R+VFD + +D
Sbjct: 369 GNALINMYSKAGSMKDA--------------------------------RQVFDRMPKRD 396
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ Q E+ FK+M+ +GV ++ + VL ACS+ L++G+ +H
Sbjct: 397 VVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHA 456
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+++ + D V AL+ MY KCGS+E+A+ F +DVVTW T+I GL G G E
Sbjct: 457 EVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLE 516
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL+ + M+ +G++PN ATFV+VL+ACR L+ EG + F M Y + PT +H+ C+V
Sbjct: 517 ALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMV 576
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L+RAG L +AE+ I +P + + ALL+AC + ++G++ A + +KL Q+
Sbjct: 577 DILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAG 636
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YV LS YA G W +VA+ R+ MKE +K+PG S I++
Sbjct: 637 LYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEI 677
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 191/393 (48%), Gaps = 34/393 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H H+ + + ++Y+ N+L+ Y +AR LFDK + V SWN ++S Y
Sbjct: 46 VGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYA 105
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E LF + E + DK T V + SAC+ L++G+ +H + GL
Sbjct: 106 HRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTT 165
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC + +A R+FD M SR
Sbjct: 166 VGNALISMYAKCGSVRDARRVFDAMASR-------------------------------- 193
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V W ++ ++ EE+L+ + M+ E V P ++VLSAC SL+ L+ G+ +H
Sbjct: 194 DEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIH 253
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I+++ D V TAL MY KCG+ ++A F +DV+ W TMI G + G
Sbjct: 254 AHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLE 313
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EA F++M +G+ P+ AT+ +VL+AC G + G ++ R V + L
Sbjct: 314 EAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVS-DVRFGNAL 372
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
+++ S+AG + A + MP D +S+ LL
Sbjct: 373 INMYSKAGSMKDARQVFDRMPKRD-VVSWTTLL 404
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 131/263 (49%), Gaps = 32/263 (12%)
Query: 78 EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDE 137
+G D V L +C + + L GK VH + + G++ + + N LL +YA C ++E
Sbjct: 22 KGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNE 81
Query: 138 ALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ 197
AR++FD+ +K +V W M+ G
Sbjct: 82 --------------------------------ARQLFDKFSNKSVVSWNVMISGYAHRGL 109
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
+EA LF M E + PD+ VS+LSACSS + L +GR +H +++ + D V A
Sbjct: 110 AQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNA 169
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LI MY+KCGS+ +A F +D V+WTT+ A G G E+L+ ++ M ++ ++P+
Sbjct: 170 LISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPS 229
Query: 318 EATFVSVLAACRHSGLITEGCQL 340
T+++VL+AC + +G Q+
Sbjct: 230 RITYMNVLSACGSLAALEKGKQI 252
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 106/211 (50%), Gaps = 10/211 (4%)
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
P + L+ + +G D V +L +C +L G+ VH IL+ + + ++
Sbjct: 12 PADVLQYLHR---KGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNT 68
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
L+ +Y+ CGS+ EA F K K VV+W MI G A+ GL EA +F M+++ ++P+
Sbjct: 69 LLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPD 128
Query: 318 EATFVSVLAACRHSGLITEGCQL-FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
+ TFVS+L+AC ++ G ++ R M T+ + L+ + ++ G + A
Sbjct: 129 KFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGN--ALISMYAKCGSVRDARRV 186
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKK 407
M + D+ +S+ L A Y+E G++
Sbjct: 187 FDAMASRDE-VSWTTLTGA---YAESGYGEE 213
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 170/467 (36%), Positives = 265/467 (56%), Gaps = 9/467 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD--KMPFRDVGSWNTLMSIYNDF 62
+HA V AL S+ + SLIH Y +AR+LFD P + WN ++ Y+
Sbjct: 93 IHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYSKI 152
Query: 63 SDSGEVLILF-KQLIFEG---IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+S E + LF + L +G +V D+ T + ++C+ L YG+ VH K G E
Sbjct: 153 RNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESN 212
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L + N+++ M + M++A ++F++M S R++ S L+ GY +D A E+F+ +
Sbjct: 213 LYVGNSVINMCSVFARMEDARKVFNQM-SERDVFSWTSLLGGYAKHGEMDRACELFNMMP 271
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMI-DEGVTPDEEVMVSVLSACSSLSNLQYGR 237
++ V W M+ G + + EAL F M+ D+ V P+E V+V VLSAC+ L L G
Sbjct: 272 VRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGN 331
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H +I + I Q + + TALIDMY+KCG ++ A F +DV+++T+MI GL+ +G
Sbjct: 332 WIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHG 391
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
LG +ALRVFYQM + + PNE T + VL C HSGL+ EG + M ++ + P IEH+
Sbjct: 392 LGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHY 451
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C +DLL RAG L +A E +K MP E + ++ALLSA + +LG+++ +++ +L +
Sbjct: 452 GCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKS 511
Query: 418 QSHE-AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
H VLLSN YA G W V E R+ M + ++ PG S I++
Sbjct: 512 SDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVN 558
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 148/350 (42%), Gaps = 77/350 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTL------ 55
G+ +H V K+ +S++YVGNS+I+ A DAR +F++M RDV SW +L
Sbjct: 197 GEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAK 256
Query: 56 -------------MSIYNDFSDS------------GEVLILFKQLIFEGIV-ADKITLVI 89
M + ND S + E L F ++ + V ++ LV
Sbjct: 257 HGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVC 316
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA L L G +H Y K+G+ N+ AL+ MYAKC +D A R+F
Sbjct: 317 VLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVF------- 369
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
NG I +D++ + SM+ G ++AL +F +M+
Sbjct: 370 ---------NG----------------ICKRDVLSFTSMISGLSYHGLGKDALRVFYQML 404
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-----NITQDAFVKTALIDMYSK 264
DE V P+E ++ VL+ CS ++ G IL N I ID+ +
Sbjct: 405 DENVMPNEITILGVLNGCSHSGLVEEG----SSILANMESLWGIAPKIEHYGCYIDLLGR 460
Query: 265 CGSLEEALVTFYKTDCK-DVVTWTTMIEGLA---NYGLGNEALRVFYQME 310
G LE AL + D+V W ++ N LG + + Q++
Sbjct: 461 AGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLK 510
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 169/473 (35%), Positives = 264/473 (55%), Gaps = 17/473 (3%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYG--RMALFTDARVLFDKMPFRDVGSWNTLMSIY--N 60
LHA KTA+ + +V + L+ Y ++ AR +FD++ R + WNT++ Y N
Sbjct: 35 LHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVEN 94
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
FS G ++LF +L+ E + D TL + CARL + GK +H A K+G +
Sbjct: 95 QFSHDG--IVLFHELVHE-YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVF 151
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRR----------NIVSLNILINGYIDMELVDLA 170
++ +L+ MY+KC E+D A ++FD M + N+VS N +INGY+ D A
Sbjct: 152 VQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSA 211
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230
E+F ++ D+V W M+ G Q +A+++F M+ G P +VSVLSA S L
Sbjct: 212 LELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGL 271
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
+ L GR +H ++ +N D + T+LI+MY+KCG +E AL F K V WT +I
Sbjct: 272 AVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAII 331
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
GL +G+ N AL +F +M + G+KPN F+ VL AC H+GL+ +G Q F M Y++
Sbjct: 332 VGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKI 391
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
+PT+EH+ CLVD+L RAG L +A+ I+ MP + + +LL + + D+G+ A
Sbjct: 392 EPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQ 451
Query: 411 NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++++ ++ Y+LLSN YA G W +V+ R M + RK PG S ++ K
Sbjct: 452 RVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHK 504
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 129/340 (37%), Gaps = 76/340 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM----- 56
GK +H K SD++V SL++ Y + AR +FD M +DV WN+L+
Sbjct: 134 GKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLV 193
Query: 57 ---SIYNDFSDSGE---VLILFKQLIFEGIV----------------------------- 81
++ N + SG+ L LF Q+ +V
Sbjct: 194 SWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLG 253
Query: 82 --ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL 139
TLV + SA + L L G+ +H Y K G E + +L+ MYAKC ++ AL
Sbjct: 254 SRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESAL 313
Query: 140 RLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
VF I K + W +++ G
Sbjct: 314 --------------------------------TVFRAIQKKKVGHWTAIIVGLGIHGMAN 341
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK-TAL 258
AL LF +M G+ P+ + + VL+AC+ + GR ++ + L
Sbjct: 342 HALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCL 401
Query: 259 IDMYSKCGSLEEALVTFYKTD-CKDVVTWTTMIEGLANYG 297
+D+ + G LEEA T + V W +++ G N+G
Sbjct: 402 VDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHG 441
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 88/197 (44%), Gaps = 21/197 (10%)
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS--KCGSLEEALVTFYKT 278
+S+ CS+ ++ +H F L+ I FV + L+ +YS K L A F +
Sbjct: 20 LSLFQTCSAPQEVEQ---LHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRI 76
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338
+ ++ W T+I+ ++ + +F+++ + + P+ T V+ C G++ EG
Sbjct: 77 QRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGK 135
Query: 339 QLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAED----------KF 386
Q+ G ++ + FV LV++ S+ G + A + M +D
Sbjct: 136 QIH---GLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNL 192
Query: 387 ISYKALLSACITYSEFD 403
+S+ A+++ + +FD
Sbjct: 193 VSWNAMINGYMKSGDFD 209
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/179 (18%), Positives = 71/179 (39%), Gaps = 1/179 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+++ K + D +G SLI Y + A +F + + VG W ++
Sbjct: 277 GRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGI 336
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-VHCYATKVGLEYMLN 120
+ L LF ++ G+ + I + + +AC + G+ + +E L
Sbjct: 337 HGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLE 396
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
L+ + + ++EA + M N V L+ G + +D+ +++
Sbjct: 397 HYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIE 455
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 169/462 (36%), Positives = 262/462 (56%), Gaps = 1/462 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ + H K +S +V N+LIH Y A+ +FD M RDV SWN+++ Y
Sbjct: 91 GQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQ 150
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
F+ +VL LF+++ + AD +T++ SA L + G + Y + G+ L +
Sbjct: 151 FNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYL 210
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L+ MY + +D A R+F +M +NIVS N +I GY + + A+++F+E+ +D
Sbjct: 211 GNTLIDMYGRRGMIDFAGRVFYQM-KEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRD 269
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W SM+ G AKQ EA++LF++M+ V PDE + + LSAC+ L +L G VH
Sbjct: 270 VISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHD 329
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +++I D FV +LIDMY KCG +E+AL F +D V+WT++I GLA G
Sbjct: 330 YIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAES 389
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL VF QM ++GI P TFV VL AC H GL+ +G + F+ M YR+ P ++H+ C+V
Sbjct: 390 ALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVV 449
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R+G L A FIK MP + ++ LLSAC + L + V+ ++ L ++
Sbjct: 450 DLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNG 509
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVL S+ YA W +V + R+ M+ +K S I+++
Sbjct: 510 NYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEVR 551
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 93/411 (22%), Positives = 178/411 (43%), Gaps = 65/411 (15%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
A +F+++ + WN ++ + + + + + ++GI +T + LF +CAR
Sbjct: 25 AHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCAR 84
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
+ + G+ V ++ K+G E + NAL+ MY E+ A ++FD M R++VS N
Sbjct: 85 VSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGM-LERDVVSWNS 143
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
+I GY + ++ L+LF++M V D
Sbjct: 144 IICGYYQFN-------------------------------RFKKVLDLFREMQAINVRAD 172
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
M+ +SA LS + G + ++I ++ + D ++ LIDMY + G ++ A FY
Sbjct: 173 SVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFY 232
Query: 277 KTDCKDVVTWTTMIEGLANYG-------LGN------------------------EALRV 305
+ K++V+W MI G A G L N EA+++
Sbjct: 233 QMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKL 292
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F +M +KP+E T + L+AC H G + G + + + ++ + L+D+
Sbjct: 293 FQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRK-HDIKSDVFVGNSLIDMYC 351
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ G++ +A + M D +S+ +++S + V + M+K G
Sbjct: 352 KCGVVEKALQVFNDMKTRDS-VSWTSIISGLAVNGFAESALNVFDQMLKEG 401
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 142/331 (42%), Gaps = 67/331 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMAL--------------------------- 33
MG L ++ + + D+Y+GN+LI YGR +
Sbjct: 191 MGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYA 250
Query: 34 ----FTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
A+ LF++MP RDV SW +++ Y+ E + LF++++ + D+IT+
Sbjct: 251 KVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVAT 310
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
SACA L L G+ VH Y K ++ + + N+L+ MY KC +++AL++F++M +R
Sbjct: 311 ALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTR- 369
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D V W S++ G E AL +F +M+
Sbjct: 370 -------------------------------DSVSWTSIISGLAVNGFAESALNVFDQML 398
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK--TALIDMYSKCGS 267
EG+ P V VL AC+ + + G + H ++N +K ++D+ + G
Sbjct: 399 KEGICPTHGTFVGVLLACAHVGLVDKG-VEHFKSMENTYRLAPEMKHYGCVVDLLCRSGY 457
Query: 268 LEEALVTFYKTD-CKDVVTWTTMIEGLANYG 297
L+ A K DVV W ++ +G
Sbjct: 458 LDMAYNFIKKMPIVPDVVIWRILLSACKLHG 488
>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g37310-like [Cucumis sativus]
Length = 635
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 264/462 (57%), Gaps = 2/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H+ + + L+ DI+V N+LI FY R AR++FD+MP RD SWN +++ Y+
Sbjct: 126 LAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYS 185
Query: 61 DFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E LF+ ++ + + +T V + ACA+ L +G VH + + ++ +
Sbjct: 186 QGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDV 245
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ NA++ +YAKC +D A LF+EM + I + +I+GY+ V+ A ++F E
Sbjct: 246 SLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCS-MISGYMVHGFVNQAMDLFREQER 304
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+ W +++ G V+ + E A+++F+ M G P+ + S+L S S L+ G+ +
Sbjct: 305 PRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEI 364
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + ++N ++ +V TA+ID Y+KCG L A + F + + ++ WT++I A +G
Sbjct: 365 HGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDA 424
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
N AL +FY+M GI+P++ TF SVLAAC HSG + E ++F + Y +QP +EH+ C
Sbjct: 425 NVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYAC 484
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+V +LSRAG L A EFI MP E + ALL+ + +LGK V + + ++ ++
Sbjct: 485 MVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPEN 544
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YV+++N Y+ G W + R MKE++ +K PGNS I+
Sbjct: 545 TGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIE 586
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 122/484 (25%), Positives = 211/484 (43%), Gaps = 80/484 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LHA + +++ D ++G+ LI FY + DA +F K+P +++ SWN L Y
Sbjct: 21 VGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALFISYT 80
Query: 61 DFSDSGEVLILFKQLIFEG---IVADKITLVILFSACARL-EKLHYGKTVHCYATKVGLE 116
+ ++L LF L+ + D+ T+ A A L K VH + + GLE
Sbjct: 81 LHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLE 140
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
Y + + NAL+ Y++C E+ A +FD M R
Sbjct: 141 YDIFVVNALITFYSRCDELVLARIMFDRMPER---------------------------- 172
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQY 235
D V W +M+ G + EE ELF+ M+ V P+ VSVL AC+ ++L +
Sbjct: 173 ----DTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTF 228
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G VHRF+ ++ I D + A+I +Y+KCG L+ A F + KD +T+ +MI G
Sbjct: 229 GIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMV 288
Query: 296 YGLGNEALRVFYQMERK-------------------------------GIKPNEATFVSV 324
+G N+A+ +F + ER G +PN T S+
Sbjct: 289 HGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASI 348
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIM 380
L H + G ++ Y ++ T + + ++D ++ G L+ A+ +
Sbjct: 349 LPVFSHFSTLKGGKEIHG-----YAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQI 403
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440
I++ +++SA + + ++ + M+ G Q + V ++ A H E+
Sbjct: 404 KGR-SLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQ--VTFTSVLAACAHSGELD 460
Query: 441 EARR 444
EA +
Sbjct: 461 EAWK 464
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 16/182 (8%)
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
++ C+ + G+ +H ++ +++ D F+ + LI YSK GS+ +A F K K+
Sbjct: 9 LIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKN 68
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQM---ERKGIKPNEATFVSVLAAC----RHSGLIT 335
+ +W + + + + L++F + +KP+ T L A +SGL
Sbjct: 69 IFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAK 128
Query: 336 EGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
E R G Y + FV L+ SR L A MP D +S+ A+L
Sbjct: 129 EVHSFILRRGLEYDI------FVVNALITFYSRCDELVLARIMFDRMPERDT-VSWNAML 181
Query: 394 SA 395
+
Sbjct: 182 AG 183
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 167/467 (35%), Positives = 267/467 (57%), Gaps = 7/467 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G +H+ + K DSD++V N LI Y AR +FD+ +DV +W T+++ Y
Sbjct: 170 VGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYA 229
Query: 60 -NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N++ D E + LF ++ + +++T++ L SAC++ GKT+H + + +
Sbjct: 230 RNNWLD--EAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCS 287
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
LN+ NA+L MY KC + A +F+ M RR++ S L+NGY + AR++FDE+
Sbjct: 288 LNLLNAMLDMYVKCGCLTTAREIFNNM-ERRDVFSWTSLLNGYAKNGDLGSARKLFDEMP 346
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGR 237
+++IV W +M+ G + QP EALELF M+D G+ P E+ +V VLSA L L+ G+
Sbjct: 347 ERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQ 406
Query: 238 LVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+H + + I +K A++DMY+KCGS++ A F+ K++V+W +MI A+Y
Sbjct: 407 EIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASY 466
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G +AL +F QM G+KP+ TF+ VL+AC + G ++EG F M + V+P EH
Sbjct: 467 GHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREH 526
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLLSR GLL +A E I MP E + ALL AC + ++ K +++L
Sbjct: 527 YACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLELD 586
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ Y LL+N A W +V RR M+E +K PG+S+I+++
Sbjct: 587 PEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIE 633
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 168/379 (44%), Gaps = 46/379 (12%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD------ARVLFDKMPFRDVGSWNTLM 56
K + AH+T T L + I+ + L+ F +D A ++FD+ + WNT++
Sbjct: 69 KQIQAHITCTGLMNQIFPASRLLAF----CALSDSGDIHYAHLIFDQTELPNCFFWNTMI 124
Query: 57 SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
Y + F+Q+I D + V AC + + G VH K G +
Sbjct: 125 KGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFD 184
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
L ++N L+ Y + + A ++FDE S +++V+ +INGY +D
Sbjct: 185 SDLFVQNGLIQNYVETGCLGFARQMFDE-SSVKDVVTWTTMINGYARNNWLD-------- 235
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
EA+ LF M+ V P+E M+++LSACS + + G
Sbjct: 236 -----------------------EAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMG 272
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+ +H I + +IT + A++DMY KCG L A F + +DV +WT+++ G A
Sbjct: 273 KTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKN 332
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G A ++F +M + I ++ +++A + E +LF M V + PT +
Sbjct: 333 GDLGSARKLFDEMPERNI----VSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDT 388
Query: 357 FVCLVDLLSRAGLLYQAEE 375
VC++ + G L +E
Sbjct: 389 LVCVLSASGQLGCLEMGQE 407
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 109/249 (43%), Gaps = 8/249 (3%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
+ A +FD+ + W +M+ G KA P F++MI D V L A
Sbjct: 102 IHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKA 161
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C + G VH I + D FV+ LI Y + G L A F ++ KDVVTW
Sbjct: 162 CGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTW 221
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL---FRR 343
TTMI G A +EA+ +F M +KPNE T +++L+AC G G L RR
Sbjct: 222 TTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRR 281
Query: 344 MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
+ ++ ++D+ + G L A E M D F S+ +LL+ +
Sbjct: 282 K----DITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVF-SWTSLLNGYAKNGDLG 336
Query: 404 LGKKVANNM 412
+K+ + M
Sbjct: 337 SARKLFDEM 345
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 167/492 (33%), Positives = 262/492 (53%), Gaps = 36/492 (7%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYG---RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
HA + KT L D + + L+ F + A + +++ + + N+++ Y +
Sbjct: 29 HAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIESPNGFTHNSVIRAYANS 88
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
S L +F++++ + DK + + ACA G+ +H K L + +E
Sbjct: 89 STPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVTDVFVE 148
Query: 123 NALLLMYAKC-------KEMD------------------------EALRLFDEMGSRRNI 151
N L+ +Y + K +D EA LFDEM RN+
Sbjct: 149 NTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEM-EERNV 207
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
S N +I+GY LV AREVFD + KD+V W +M+ E LE+F M+D+
Sbjct: 208 ESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDD 267
Query: 212 GVT-PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
PD +V+VLSAC+SL +L G VH +I ++ I + FV TAL+DMYSKCG +++
Sbjct: 268 SAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDK 327
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
AL F T +DV TW ++I GL+ +GLG +AL +F +M +G KPN TF+ VL+AC H
Sbjct: 328 ALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNH 387
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
GL+ + +LF M VY ++PTIEH+ C+VDLL R G +AEE + +PA++ I +
Sbjct: 388 VGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEASILLE 447
Query: 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450
+LL AC + + + +++AN +++ + YV +SN YA G W E E R M+ +
Sbjct: 448 SLLGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYASHGRWDEAMEVRGKMRAER 507
Query: 451 TRKKPGNSIIDL 462
+K PG S+I++
Sbjct: 508 VKKNPGCSMIEV 519
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 75/160 (46%), Gaps = 1/160 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H ++ K ++ + +V +L+ Y + A +F RDV +WN++++ +
Sbjct: 293 GEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSV 352
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYMLN 120
+ L +F ++++EG + IT + + SAC + L + + V G+E +
Sbjct: 353 HGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTIE 412
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
++ + + + +EA L +E+ + + L L+
Sbjct: 413 HYGCMVDLLGRMGKFEEAEELVNEVPADEASILLESLLGA 452
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 176/532 (33%), Positives = 267/532 (50%), Gaps = 72/532 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H HV K+ D+ V +S + Y + +F DA LFD+MP RDV SWN ++S Y
Sbjct: 317 GKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQ 376
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L LF+++ G D +TL + S+CARL L GK +H + G +
Sbjct: 377 DGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFV 436
Query: 122 ENALLLMYAKC----------------------------------KEMDEALRLFDEMGS 147
+AL+ MY KC K E R DE G
Sbjct: 437 SSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGI 496
Query: 148 RRNIVSLNIL---------------INGYI-----------DMELVDL---------ARE 172
R + +L+ + I+GYI + L+DL A
Sbjct: 497 RPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAEN 556
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
VF + ++V W M+ G VK EAL +F M GV PD SVL ACS L+
Sbjct: 557 VFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAV 616
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L+ G+ +H FI+++ + + V AL+DMY+KCG+++EAL F + +D V+WT+MI
Sbjct: 617 LEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAA 676
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
++G EAL++F +M++ KP++ TF+++L+AC H+GL+ EGC F +M Y +P
Sbjct: 677 YGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKP 736
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMP--AEDKFISYKALLSACITYSEFDLGKKVAN 410
+EH+ CL+DLL R G L +A E ++ P ED + L SAC + + DLG+++
Sbjct: 737 AVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGL-LSTLFSACHLHKKLDLGEQIGR 795
Query: 411 NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+++ Y++LSN YA W EV + R +KEL +K PG S I++
Sbjct: 796 LLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEV 847
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 122/422 (28%), Positives = 204/422 (48%), Gaps = 44/422 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM--PFRDVGSWNTLMSI 58
+GK +H + L ++I + SLI+ Y LF A+++F + P D+ WN LM+
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPL-DITLWNGLMAA 271
Query: 59 YNDFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
E L +F +L+ F + D T + AC+ L ++ YGK VH + K G
Sbjct: 272 CTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAM 331
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + ++ + MYAKC ++A++LFDEM R
Sbjct: 332 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPER----------------------------- 362
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
D+ W +++ + QPE+ALELF++M G PD + +V+S+C+ L +L+ G+
Sbjct: 363 ---DVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGK 419
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H ++++ D FV +AL+DMY KCG LE A F + K+VV+W +MI G + G
Sbjct: 420 EIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKG 479
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY---RVQPTI 354
+ +F +M+ +GI+P T S+L AC S QL + + G RV+ I
Sbjct: 480 DSKSCIELFRRMDEEGIRPTLTTLSSILMACSRS----VNLQLGKFIHGYIIRNRVEADI 535
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
L+DL + G + AE + MP + +S+ ++S + + + +M K
Sbjct: 536 FVNSSLIDLYFKCGNIGSAENVFQNMPKTN-VVSWNVMISGYVKVGSYLEALVIFTDMRK 594
Query: 415 LG 416
G
Sbjct: 595 AG 596
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 126/279 (45%), Gaps = 33/279 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H ++ + +++DI+V +SLI Y + A +F MP +V SWN ++S Y
Sbjct: 518 LGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYV 577
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L++F + G+ D IT + AC++L L GK +H + + LE
Sbjct: 578 KVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEV 637
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ ALL MYAKC +DEAL +F+++ R
Sbjct: 638 VMGALLDMYAKCGAVDEALHIFNQLPER-------------------------------- 665
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLV 239
D V W SM+ Q EAL+LF+KM PD+ +++LSACS + G
Sbjct: 666 DFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYF 725
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
++ I + + LID+ + G L EA +T
Sbjct: 726 NQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRT 764
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 147/389 (37%), Positives = 235/389 (60%), Gaps = 1/389 (0%)
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
++ +G+ ++ TL + ACA + L GK H Y K+G E + ++ AL+ MYA+C
Sbjct: 1 MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+++A +FD+M S R+ + N +I G+ + A ++F E+ ++D+V W +++ G +
Sbjct: 61 LEDAGHVFDKM-SERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQ 119
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+E+L +F +M G+ D +M SVLSAC+ L+ L+ GR H +++Q+ D V
Sbjct: 120 NGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVV 179
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
+AL+DMY+K GS+E+A F K ++ V+W ++I G A +G GN+A+ +F QM + GI
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGI 239
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
KPNE +FV VL+AC H+GL+ EG F M Y + P + H+ C++DLL RAG L +AE
Sbjct: 240 KPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAE 299
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
FI MP E + ALL AC + +L K++A +++ + Q YVLLSN YA G
Sbjct: 300 NFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAG 359
Query: 435 HWTEVAEARRNMKELQTRKKPGNSIIDLK 463
W + A+ R+ MK+ K+PG S I++K
Sbjct: 360 QWDDAAKVRKLMKDRGVMKQPGYSWIEVK 388
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 133/304 (43%), Gaps = 68/304 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
GK H ++ K +SD+ V +L+H Y R DA +FDKM R +WN +++ +
Sbjct: 29 GKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQ 88
Query: 60 -------------------------------NDFSDSGEVLILFKQLIFEGIVADKITLV 88
N + D E L +F Q+ G+ +D+ +
Sbjct: 89 NRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGD--ESLNVFNQMRKTGMKSDRFIMG 146
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ SACA L L G+ H Y + G + + +AL+ MYAK M++A ++FD+M +
Sbjct: 147 SVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKM-PQ 205
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
RN VS W S++ GC + + +A+ LF++M
Sbjct: 206 RNEVS-------------------------------WNSIITGCAQHGRGNDAVLLFEQM 234
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGS 267
+ G+ P+E V VLSACS + GR + QN I D T +ID+ + G
Sbjct: 235 LQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGC 294
Query: 268 LEEA 271
L+EA
Sbjct: 295 LDEA 298
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ HA+V ++ DI VG++L+ Y + DA +FDKMP R+ SWN++++
Sbjct: 160 LGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCA 219
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYML 119
+ ++LF+Q++ GI ++I+ V + SAC+ ++ G+ T+ G+ +
Sbjct: 220 QHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDV 279
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ ++ + + +DEA + M ++ L+ +LA+ + + ++
Sbjct: 280 SHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLG 339
Query: 180 KDI------VLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
++ VL ++ A Q ++A ++ K M D GV
Sbjct: 340 MEVQIAGIYVLLSNIY---AAAGQWDDAAKVRKLMKDRGV 376
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 162/477 (33%), Positives = 258/477 (54%), Gaps = 36/477 (7%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYG---RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
HA + KT L D + + L+ F + A + +++ + + N+++ Y +
Sbjct: 59 HAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANS 118
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
S L +F++++ + DK + + ACA G+ +H K GL + +E
Sbjct: 119 STPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVE 178
Query: 123 NALLLMYAKCKE-------------------------------MDEALRLFDEMGSRRNI 151
N L+ +Y + +DEA LFDEM RN+
Sbjct: 179 NTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEM-EERNV 237
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
S N +I+GY LV A+EVFD + +D+V W +M+ E LE+F KM+D+
Sbjct: 238 ESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDD 297
Query: 212 GV-TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
PD +VSVLSAC+SL +L G VH +I ++ I + F+ TAL+DMYSKCG +++
Sbjct: 298 STEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDK 357
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
AL F T +DV TW ++I L+ +GLG +AL +F +M +G KPN TF+ VL+AC H
Sbjct: 358 ALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNH 417
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
G++ + +LF M VYRV+PTIEH+ C+VDLL R G + +AEE + +PA++ I +
Sbjct: 418 VGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILLE 477
Query: 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
+LL AC + + + +++AN +++L + Y +SN YA +G W +V + RRNM+
Sbjct: 478 SLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDGRRNMR 534
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 93/214 (43%), Gaps = 40/214 (18%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H ++ K ++ + ++ +L+ Y + A +F RDV +WN+++S +
Sbjct: 323 GEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSV 382
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L +F ++++EG + IT + + SAC VG+
Sbjct: 383 HGLGKDALEIFSEMVYEGFKPNGITFIGVLSAC----------------NHVGM------ 420
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGS----RRNIVSLNILINGYIDMELVDLAREVFDEI 177
+D+A +LF+ M S I +++ M ++ A E+ +EI
Sbjct: 421 -------------LDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEI 467
Query: 178 -VDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
D+ +L S++ C + Q E+A + ++++
Sbjct: 468 PADEASILLESLLGACKRFGQLEQAERIANRLLE 501
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 106/252 (42%), Gaps = 23/252 (9%)
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
E KKM TP V +LS +L + H F+L+ + D F + L+
Sbjct: 27 ENLKKMSVCSSTP-----VPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFA 81
Query: 263 S---KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
+ + ++ A + + T ++I AN AL VF +M + P++
Sbjct: 82 ATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKY 141
Query: 320 TFVSVLAACRHSGLITEGCQ---LFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAE 374
+F VL AC EG Q LF + G V V FV LV++ R+G A
Sbjct: 142 SFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDV------FVENTLVNVYGRSGYFEIAR 195
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
+ + MP D +S+ +LLSA + D + + + M + ++ E++ + + YA G
Sbjct: 196 KVLDRMPVRDA-VSWNSLLSAYLEKGLVDEARALFDEMEE---RNVESWNFMISGYAAAG 251
Query: 435 HWTEVAEARRNM 446
E E +M
Sbjct: 252 LVKEAKEVFDSM 263
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 182/534 (34%), Positives = 271/534 (50%), Gaps = 75/534 (14%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ +H + K +S V NSLI FY A+ LFD++ RDV SWN+++S Y
Sbjct: 270 GRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVK 329
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYM 118
N D G + I K L+F G+ D T+V +F ACA + L GK +H Y+ K L+
Sbjct: 330 NGLDDRG-IEIFIKMLVF-GVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDRE 387
Query: 119 LNMENALLLMYAKCKEMDEALR-------------------------------LFDEMGS 147
+ N LL MY+KC +++ A+R LFDEM S
Sbjct: 388 VRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKS 447
Query: 148 RRNIVSL-----------------------------NILINGYIDMELVDL--------- 169
R + + N+ N ++ L D+
Sbjct: 448 RGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKD 507
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A +VF + KD++ W +M+ G K P EAL LF +M E PD + +L AC+S
Sbjct: 508 AHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACAS 566
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
L+ L GR +H + L+N ++D +V A++DMY KCG L A F KD+V+WT M
Sbjct: 567 LAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVM 626
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I G +G G+EA+ F QM GI+P+E +F+S+L AC HSGL+ EG ++F M +
Sbjct: 627 IAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQ 686
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
++P +EH+ C+VDLL+R G L +A +FIK MP + + ALL C + + L +KVA
Sbjct: 687 IEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVA 746
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ +L ++ YVLL+N YA W EV + R+ + + +K PG S I++K
Sbjct: 747 ERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIK 800
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/399 (26%), Positives = 192/399 (48%), Gaps = 43/399 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ + + + + + D +G L+ Y + + R++FDK+ + WN ++S Y+
Sbjct: 169 GRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSG 228
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ GE + LFKQ++ GI + T + A + ++ G+ VH K+G +
Sbjct: 229 SGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTV 288
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ Y +++ A +LFDE+ + R+++S N +I+GY+ L D
Sbjct: 289 VNSLISFYFVGRKVRCAQKLFDEL-TDRDVISWNSMISGYVKNGLDD------------- 334
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+E+F KM+ GV D MV+V AC+++ L G+++H
Sbjct: 335 ------------------RGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHS 376
Query: 242 F-ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ I + ++ L+DMYSKCG L A+ F + D K VV+WT+MI G GL +
Sbjct: 377 YSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSD 436
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE--HFV 358
A+++F +M+ +G+ P+ S+L AC +G + G ++ Y + +E FV
Sbjct: 437 GAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSG-----KIVHDYIRENNLETNSFV 491
Query: 359 --CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
L D+ ++ G + A + M +D IS+ ++
Sbjct: 492 SNALTDMYAKCGSMKDAHDVFSHMKKKD-VISWNTMIGG 529
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 142/317 (44%), Gaps = 13/317 (4%)
Query: 112 KVGLEYMLNMENALLLMYAKCKEMD---EALRLFDEMGSRRNIVSLNILINGYIDMELV- 167
K +E + + +N+ + A C + E + D R I S ++I+G + ++LV
Sbjct: 134 KNAMELLCSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVF 193
Query: 168 ------DL--AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
DL R VFD++ + I LW M+ + E++ LFK+M++ G+ P+
Sbjct: 194 MYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYT 253
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279
S+L ++++ ++ GR VH I + V +LI Y + A F +
Sbjct: 254 FSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELT 313
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339
+DV++W +MI G GL + + +F +M G+ + AT V+V AC + G + G
Sbjct: 314 DRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKV 373
Query: 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
L + + L+D+ S+ G L A + M E +S+ ++++ +
Sbjct: 374 LHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMD-EKTVVSWTSMITGYVRE 432
Query: 400 SEFDLGKKVANNMMKLG 416
D K+ + M G
Sbjct: 433 GLSDGAIKLFDEMKSRG 449
>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
Length = 864
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 248/463 (53%), Gaps = 34/463 (7%)
Query: 3 KGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GL H K+ D D+ V N+++ YG+ +A ++F +M RD SWN +++
Sbjct: 371 QGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALE 430
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + +++ G+ D T + ACA L+ L YG VH A K GL
Sbjct: 431 QNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAF 490
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ + ++ MY KC + EA +L D +G +
Sbjct: 491 VSSTVVDMYCKCGAITEAQKLHDRIGG--------------------------------Q 518
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++V W S++ G KQ EEA F +M+D GV PD +VL C++L+ ++ G+ +H
Sbjct: 519 ELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIH 578
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I++ + D ++ + L+DMY+KCG++ ++L+ F K D V+W MI G A +G G
Sbjct: 579 GQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGYALHGQGL 638
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F +M+R + PN ATFV+VL AC H GL+ +GCQ F M Y++ P +EHF C+
Sbjct: 639 EALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRYKLVPQLEHFACM 698
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L R+ +A EFI+ MP E + +K LLS C + ++ + A+N+++L
Sbjct: 699 VDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEVAETAASNVLRLDPDDA 758
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+LLSN YA G W +V+ RR M++ + RK+PG S I+++
Sbjct: 759 SVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSWIEVQ 801
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 181/429 (42%), Gaps = 73/429 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ HA + + +V N L+ Y R A +FD MP RD SWNT+++ Y
Sbjct: 38 GQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTAYVH 97
Query: 62 FSDSGEVLILFK-------------------------------QLIFEGIVADKITLVIL 90
D+ LF ++ G+ D+ TL +L
Sbjct: 98 AGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVL 157
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
+C L+ L G +H A K GLE + +AL+ MY KC+ +D+ALR F MG R +
Sbjct: 158 LKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNS 217
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
V W + + GCV+ +Q +ELF +M
Sbjct: 218 --------------------------------VSWGAAIAGCVQNEQYTRGMELFVQMQR 245
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ + S +C+++ L R +H ++N + D V TA++D+Y+K G+L +
Sbjct: 246 LGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVD 305
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F +V T M+ GL GLG EA+++F M R G+ + + V +AC
Sbjct: 306 ARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAE 365
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRAGLLYQAEEFIKIMPAEDKF 386
+G Q+ V+ + VC ++DL + L +A + M D
Sbjct: 366 VKGYFQGLQVH-----CLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDS- 419
Query: 387 ISYKALLSA 395
+S+ A+++A
Sbjct: 420 VSWNAIIAA 428
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 107/457 (23%), Positives = 185/457 (40%), Gaps = 85/457 (18%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G +HA KT L++D+ G++L+ YG+ DA F M R+ SW ++ +
Sbjct: 169 LGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCV 228
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N+ G + LF Q+ G+ + F +CA + L + +H +A K
Sbjct: 229 QNEQYTRG--MELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSD 286
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ A++ +YAK + +A R F + N+ + N
Sbjct: 287 RVVGTAIVDVYAKAGNLVDARRAFIGL-PHHNVETCN----------------------- 322
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+MM G V+ EA++LF+ M GV D + V SAC+ + G
Sbjct: 323 --------AMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQ 374
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH +++ D V+ A++D+Y KC +L EA + F + + +D V+W +I L
Sbjct: 375 VHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNEC 434
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACR----------------------------- 329
+ + +M R G++P++ T+ SVL AC
Sbjct: 435 YEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSST 494
Query: 330 ------HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI---- 379
G ITE +L R+GG + V ++S L Q+EE +
Sbjct: 495 VVDMYCKCGAITEAQKLHDRIGG--------QELVSWNSIISGFSLTKQSEEAQRFFSEM 546
Query: 380 --MPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
M + +Y +L C + +LGK++ ++K
Sbjct: 547 LDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIK 583
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 134/306 (43%), Gaps = 7/306 (2%)
Query: 79 GIVADKITLVILFSACARLEK--LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
G VA T L+ CA + L G+ H G + N LL MYA+C
Sbjct: 13 GFVA-TATFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTA 71
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A +FD M R+ VS N ++ Y+ D A +F + D D+V W +++ G +
Sbjct: 72 HAHGVFDTM-PHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHG 130
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
++ L +M GV D + +L +C L +L G +H ++ + D +
Sbjct: 131 MFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGS 190
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
AL+DMY KC SL++AL F+ ++ V+W I G + +F QM+R G+
Sbjct: 191 ALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGV 250
Query: 317 NEATFVSVLAACRHSGLITEGCQLF-RRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
++ + S +C ++ QL + V+ + +VD+ ++AG L A
Sbjct: 251 SQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVG--TAIVDVYAKAGNLVDARR 308
Query: 376 FIKIMP 381
+P
Sbjct: 309 AFIGLP 314
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 93/232 (40%), Gaps = 34/232 (14%)
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA------------ 271
L A + S L G+ H +L + FV L+ MY++CG A
Sbjct: 26 LCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDT 85
Query: 272 -----LVTFY----KTDC----------KDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
++T Y TD DVV+W T+I G +G+ ++ + +M R+
Sbjct: 86 VSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRR 145
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
G+ + T +L +C + G Q+ + ++ + LVD+ + L
Sbjct: 146 GVALDRTTLAVLLKSCGGLDDLALGVQI-HALAVKTGLETDVRAGSALVDMYGKCRSLDD 204
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG-NQSHEAY 423
A F M E +S+ A ++ C+ ++ G ++ M +LG S AY
Sbjct: 205 ALRFFHGM-GERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAY 255
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 1/160 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K + D Y+ ++L+ Y + D+ ++F+K D SWN ++ Y
Sbjct: 573 LGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGYA 632
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
E L +F+++ +V + T V + AC+ + L G + H ++ L L
Sbjct: 633 LHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRYKLVPQL 692
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
++ + + K EAL M + V L++
Sbjct: 693 EHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLS 732
>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Cucumis sativus]
Length = 595
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 153/462 (33%), Positives = 266/462 (57%), Gaps = 2/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H+ + + L+ DI+V N+LI FY R AR++FD+MP RD+ SWN +++ Y+
Sbjct: 126 LAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYS 185
Query: 61 DFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ LF+ ++ + + +T V + ACA+ L +G VH + + ++ +
Sbjct: 186 QGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDV 245
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ NA++ +YAKC +D A LF+EM ++ ++ +I+GY+ V+ A ++F E
Sbjct: 246 SLWNAVIGLYAKCGSLDYARELFEEM-LEKDAITYCSMISGYMVHGFVNQAMDLFREQER 304
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+ W +++ G V+ + E A+++F+ M G P+ + S+L S S L+ G+ +
Sbjct: 305 PRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEI 364
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + ++N ++ +V TA+ID Y+KCG L A + F + + ++ WT++I A +G
Sbjct: 365 HGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDA 424
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
N AL +FY+M GI+P++ TF SVLAAC HSG + E ++F + Y +QP +EH+ C
Sbjct: 425 NVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYAC 484
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+V +LSRAG L A EFI MP E + ALL+ + +LGK V + + ++ ++
Sbjct: 485 MVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPEN 544
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YV+++N Y+ G W + R MKE++ +K PGNS I+
Sbjct: 545 TGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIE 586
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 123/484 (25%), Positives = 215/484 (44%), Gaps = 80/484 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LHA + +++ D ++G+ LI FY + DA +F K+P +++ SWN L+ Y
Sbjct: 21 VGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALLISYT 80
Query: 61 DFSDSGEVLILFKQLIFEG---IVADKITLVILFSACARL-EKLHYGKTVHCYATKVGLE 116
+ ++L LF L+ + D+ T+ A A L K VH + + GLE
Sbjct: 81 LHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSNSGLAKEVHSFILRRGLE 140
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
Y + + NAL+ Y++C E+ A +FD M R+IVS
Sbjct: 141 YDIFVVNALITFYSRCDELVLARIMFDRM-PERDIVS----------------------- 176
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQY 235
W +M+ G + E+ ELF+ M+ V P+ VSVL AC+ ++L +
Sbjct: 177 --------WNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIF 228
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G VHRF+ ++ I D + A+I +Y+KCGSL+ A F + KD +T+ +MI G
Sbjct: 229 GIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMV 288
Query: 296 YGLGNEALRVFYQMERK-------------------------------GIKPNEATFVSV 324
+G N+A+ +F + ER G +PN T S+
Sbjct: 289 HGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASI 348
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIM 380
L H + G ++ Y ++ T + + ++D ++ G L+ A+ +
Sbjct: 349 LPVFSHFSTLKGGKEIHG-----YAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQI 403
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440
I++ +++SA + + ++ + M+ G Q + V ++ A H E+
Sbjct: 404 KGR-SLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQ--VTFTSVLAACAHSGELD 460
Query: 441 EARR 444
EA +
Sbjct: 461 EAWK 464
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C+ + G+ +H ++ +++ D F+ + LI YSK GS+ +A F K K++ +W
Sbjct: 13 CTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSW 72
Query: 287 TTMIEGLANYGLGNEALRVFYQM---ERKGIKPNEATFVSVLAAC----RHSGLITEGCQ 339
++ + + + L++F + +KP+ T L A +SGL E
Sbjct: 73 NALLISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSNSGLAKEVHS 132
Query: 340 LFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
R G Y + FV L+ SR L A MP D +S+ A+L+
Sbjct: 133 FILRRGLEYDI------FVVNALITFYSRCDELVLARIMFDRMPERD-IVSWNAMLAG 183
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 176/532 (33%), Positives = 267/532 (50%), Gaps = 72/532 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H HV K+ D+ V +S + Y + +F DA LFD+MP RDV SWN ++S Y
Sbjct: 125 GKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQ 184
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L LF+++ G D +TL + S+CARL L GK +H + G +
Sbjct: 185 DGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFV 244
Query: 122 ENALLLMYAKC----------------------------------KEMDEALRLFDEMGS 147
+AL+ MY KC K E R DE G
Sbjct: 245 SSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGI 304
Query: 148 RRNIVSLNIL---------------INGYI-----------DMELVDL---------ARE 172
R + +L+ + I+GYI + L+DL A
Sbjct: 305 RPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAEN 364
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
VF + ++V W M+ G VK EAL +F M GV PD SVL ACS L+
Sbjct: 365 VFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAV 424
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L+ G+ +H FI+++ + + V AL+DMY+KCG+++EAL F + +D V+WT+MI
Sbjct: 425 LEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAA 484
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
++G EAL++F +M++ KP++ TF+++L+AC H+GL+ EGC F +M Y +P
Sbjct: 485 YGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKP 544
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMP--AEDKFISYKALLSACITYSEFDLGKKVAN 410
+EH+ CL+DLL R G L +A E ++ P ED + L SAC + + DLG+++
Sbjct: 545 AVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGL-LSTLFSACHLHKKLDLGEQIGR 603
Query: 411 NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+++ Y++LSN YA W EV + R +KEL +K PG S I++
Sbjct: 604 LLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEV 655
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 203/421 (48%), Gaps = 44/421 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM--PFRDVGSWNTLMSIY 59
GK +H + L ++I + SLI+ Y LF A+++F + P D+ WN LM+
Sbjct: 22 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPL-DITLWNGLMAAC 80
Query: 60 NDFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
E L +F +L+ F + D T + AC+ L ++ YGK VH + K G
Sbjct: 81 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMD 140
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + ++ + MYAKC ++A++LFDEM R
Sbjct: 141 VVVMSSAVGMYAKCNVFEDAIKLFDEMPER------------------------------ 170
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D+ W +++ + QPE+ALELF++M G PD + +V+S+C+ L +L+ G+
Sbjct: 171 --DVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKE 228
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++++ D FV +AL+DMY KCG LE A F + K+VV+W +MI G + G
Sbjct: 229 IHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGD 288
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY---RVQPTIE 355
+ +F +M+ +GI+P T S+L AC S QL + + G RV+ I
Sbjct: 289 SKSCIELFRRMDEEGIRPTLTTLSSILMACSRS----VNLQLGKFIHGYIIRNRVEADIF 344
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
L+DL + G + AE + MP + +S+ ++S + + + +M K
Sbjct: 345 VNSSLIDLYFKCGNIGSAENVFQNMPKTN-VVSWNVMISGYVKVGSYLEALVIFTDMRKA 403
Query: 416 G 416
G
Sbjct: 404 G 404
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 126/279 (45%), Gaps = 33/279 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H ++ + +++DI+V +SLI Y + A +F MP +V SWN ++S Y
Sbjct: 326 LGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYV 385
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L++F + G+ D IT + AC++L L GK +H + + LE
Sbjct: 386 KVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEV 445
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ ALL MYAKC +DEAL +F+++ R
Sbjct: 446 VMGALLDMYAKCGAVDEALHIFNQLPER-------------------------------- 473
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLV 239
D V W SM+ Q EAL+LF+KM PD+ +++LSACS + G
Sbjct: 474 DFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYF 533
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
++ I + + LID+ + G L EA +T
Sbjct: 534 NQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRT 572
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVHRFI----LQNNITQDAFVKTALIDMYSKCGSLEEA 271
D ++S+L C L+ G+L+H+ I LQNNIT + +LI++Y C + A
Sbjct: 2 DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNIT----LCKSLINLYFSCHLFQSA 57
Query: 272 LVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQ-MERKGIKPNEATFVSVLAACR 329
+ F + D+ W ++ + E L VF++ + +KP+ T+ SVL AC
Sbjct: 58 KLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACS 117
Query: 330 HSGLITEG 337
G + G
Sbjct: 118 GLGRVGYG 125
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 164/461 (35%), Positives = 259/461 (56%), Gaps = 4/461 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMAL--FTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+HAH+ KT L + ++ F A ++F ++ ++ SWNT++ ++
Sbjct: 43 IHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTIIRGFSQS 102
Query: 63 SDSGEVLILF-KQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S + LF LI + ++T +F A A+L HYG +H K+GL++ +
Sbjct: 103 STPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFDPFI 162
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N ++ MYA C + E + F E +IV+ N +I G VD +R++FDE+ ++
Sbjct: 163 RNTIIYMYANCGFLSEMWKAFYERMDF-DIVAWNSMIMGLAKCGEVDESRKLFDEMPLRN 221
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W SM+ G V+ + EAL+LF +M +E + P E MVS+L+A + L L+ G +H
Sbjct: 222 TVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHD 281
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +NN + V ++IDMY KCGS+ EA F K + +W TMI GLA G NE
Sbjct: 282 YIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENE 341
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+++F ++E ++P++ TFV VL AC +SGL+ + + F M Y+++P+I+H+ C+V
Sbjct: 342 AIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMV 401
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D L RAGLL +AEE I+ MP I + +LLSAC + +L K+ A +++ L
Sbjct: 402 DTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDLDGNDSC 461
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA + E E R +MKE Q K+PG S+I++
Sbjct: 462 GYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLIEV 502
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 77/181 (42%), Gaps = 1/181 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H ++ K + ++ V S+I Y + +A +F+ P + + SWNT++
Sbjct: 276 GEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAM 335
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYMLN 120
E + LF +L + D +T V + +AC + K +K +E +
Sbjct: 336 NGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIK 395
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ ++ + ++EA L M + + + L++ V+LA+ IVD
Sbjct: 396 HYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDL 455
Query: 181 D 181
D
Sbjct: 456 D 456
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 164/480 (34%), Positives = 256/480 (53%), Gaps = 20/480 (4%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD-ARVLFDKMPFRDVGSWNTLMSIYND 61
K LHA KT D +I F + D AR +F +MP + WNT++ + +
Sbjct: 36 KQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAE 95
Query: 62 FSD---SGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+D E L+LF ++ +G V ++ T + ACAR +L GK +H K G
Sbjct: 96 TNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHE 155
Query: 118 MLNMENALLLMYAKCKEMDEALRLF---------------DEMGSRRNIVSLNILINGYI 162
+ + L+ MY C M++A LF D+ N+V NI+I+G +
Sbjct: 156 DEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQV 215
Query: 163 DMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS 222
+ + A+ +FDE+ + +V W M+ G + EA+ LF++M + P+ +VS
Sbjct: 216 RLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVS 275
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
VL A + + L+ G+ +H + +N I D + +AL+DMYSKCGS++EAL F ++
Sbjct: 276 VLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRN 335
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
+TW+ +I A +G +A+ F+ M + G+ PN+ ++ +L+AC H+GL+ EG F
Sbjct: 336 AITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFS 395
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
M V +QP IEH+ C+VDLL RAG L +AEE I+ MP E + +KALL AC +
Sbjct: 396 HMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNL 455
Query: 403 DLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+G++VA +M+L +YV LSN YA G+W VA R MK + RK PG S I++
Sbjct: 456 KMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEI 515
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 243/463 (52%), Gaps = 33/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH + + + D+ + VG L+ Y + AR +FD M R+ SW+ ++ Y
Sbjct: 229 GKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVX 288
Query: 62 FSDSGEVLILFKQLIF-EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF Q+I + + +TL + ACA+L L G+ +HCY K+G +
Sbjct: 289 SDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDIL 348
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N LL MYAKC +D+A+R FD + K
Sbjct: 349 LGNTLLSMYAKCGVIDDAIRF--------------------------------FDXMNPK 376
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V + +++ GCV+ AL +F+ M G+ PD M+ VL ACS L+ LQ+G H
Sbjct: 377 DSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSH 436
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ D + ALIDMYSKCG + A F + D D+V+W MI G +GLG
Sbjct: 437 GYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGM 496
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F+ + G+KP++ TF+ +L++C HSGL+ EG F M + + P +EH +C+
Sbjct: 497 EALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICM 556
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L RAGL+ +A FI+ MP E + ALLSAC + +LG++V+ + LG +S
Sbjct: 557 VDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPEST 616
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLLSN Y+ G W + A R K+ +K PG S I++
Sbjct: 617 GNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEIN 659
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/406 (27%), Positives = 194/406 (47%), Gaps = 40/406 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H+H L+SD++V +L+ FY + + +A+ LF M RDV +WN +++ +
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + + L Q+ EGI + T+V + + L +GK +H Y + + + +
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVV 247
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
LL MYAKC+ + A ++FD MG RN VS + +I GY+ + + A E+FD+++ KD
Sbjct: 248 GTGLLDMYAKCQCLLYARKIFDVMGV-RNEVSWSAMIGGYVXSDCMKEALELFDQMILKD 306
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ P + SVL AC+ L++L GR +H
Sbjct: 307 ------------------------------AMDPTPVTLGSVLRACAKLTDLSRGRKLHC 336
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I++ D + L+ MY+KCG +++A+ F + KD V+++ ++ G G
Sbjct: 337 YIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAV 396
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC-- 359
AL +F M+ GI P+ T + VL AC H + G F G + + +C
Sbjct: 397 ALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG---FCSHGYLIVRGFATDTLICNA 453
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
L+D+ S+ G + A E M D +S+ A++ I Y LG
Sbjct: 454 LIDMYSKCGKISFAREVFNRMDRHD-IVSWNAMI---IGYGIHGLG 495
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 106/400 (26%), Positives = 174/400 (43%), Gaps = 41/400 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +H H K ++D V + L Y AR LFD++P V WN ++ Y
Sbjct: 27 AKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAW 86
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L+ ++ G+ +K T + AC+ L + G +H +A GLE + +
Sbjct: 87 NGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFV 146
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ YAKC + EA RLF M R D
Sbjct: 147 CTALVDFYAKCGILVEAQRLFSSMSHR--------------------------------D 174
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ GC ++A++L +M +EG+ P+ +V VL L +G+ +H
Sbjct: 175 VVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHG 234
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ ++ + V T L+DMY+KC L A F ++ V+W+ MI G E
Sbjct: 235 YCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKE 294
Query: 302 ALRVFYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQL---FRRMGGVYRVQPTIEHF 357
AL +F QM K + P T SVL AC ++ G +L ++G V +
Sbjct: 295 ALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNT-- 352
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
L+ + ++ G++ A F M +D +S+ A++S C+
Sbjct: 353 --LLSMYAKCGVIDDAIRFFDXMNPKDS-VSFSAIVSGCV 389
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 176/534 (32%), Positives = 274/534 (51%), Gaps = 74/534 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ LH ++ K+ VGNSL+ FY + AR +FD+M RDV SWN++++ Y
Sbjct: 214 GEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVS 273
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N ++ G L +F Q++F GI D T+V +F+ CA + G+ VHC+ K
Sbjct: 274 NGLAEKG--LSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSRED 331
Query: 120 NMENALLLMYAKCKEMD-------------------------------EALRLFDEM--- 145
N LL MY+KC ++D EA++LF+EM
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391
Query: 146 GSRRNIVSLNILING--------------------------YIDMELVDL---------A 170
G ++ ++ ++N ++ L+D+ A
Sbjct: 392 GISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREA 451
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSS 229
VF E+ KDI+ W +++ G K EAL LF + +++ +PDE + VL AC+S
Sbjct: 452 ELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACAS 511
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
LS GR +H +I++N D V +L+DMY+KCG+L A + F KD+V+WT M
Sbjct: 512 LSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVM 571
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I G +G G EA+ +F QM + GI+P+E +FVS+L AC HSGL+ EG + F M +
Sbjct: 572 IAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECK 631
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
++PT+EH+ C+VD+L+R G L +A FI+ MP + ALL C + + L ++VA
Sbjct: 632 IEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVA 691
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ +L ++ YVL++N YA W EV R+ + + RK PG S I++K
Sbjct: 692 EKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIK 745
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 187/387 (48%), Gaps = 46/387 (11%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEV---LI 70
LDS++ G+ L Y +A +FD++ WN LM N+ + SG+ +
Sbjct: 127 LDSNL--GSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILM---NELAKSGDFSGSIG 181
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
LFK+++ G+ D T + + + L ++ G+ +H Y K G ++ N+L+ Y
Sbjct: 182 LFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYL 241
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
K +D A ++FDEM + R+++S N +INGY+ L
Sbjct: 242 KNHRVDSARKVFDEM-TERDVISWNSIINGYVSNGLA----------------------- 277
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
E+ L +F +M+ G+ D +VSV + C+ + GR VH F ++ ++
Sbjct: 278 --------EKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSR 329
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
+ L+DMYSKCG L+ A V F + + VV++T+MI G A GL EA+++F +ME
Sbjct: 330 EDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEME 389
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAG 368
+GI P+ T +VL C + L+ EG ++ + + FV L+D+ ++ G
Sbjct: 390 EEGISPDVYTVTAVLNCCARNRLLDEGKRVHE---WIKENDMGFDIFVSNALMDMYAKCG 446
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSA 395
+ +AE M +D IS+ ++
Sbjct: 447 SMREAELVFSEMRVKD-IISWNTVIGG 472
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 169/396 (42%), Gaps = 57/396 (14%)
Query: 10 TKTALDSDIYVGNSLIHFYGRMALFT-----DARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
T L SD+ V +I + R +L T D+ FD R V NT + F +
Sbjct: 23 THKELRSDVRVRKDVI--FNRASLRTVSDRADSITTFD----RSVTDANTQL---RRFCE 73
Query: 65 SGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
SG + K L G D TL + CA + L GK V + G N+ +
Sbjct: 74 SGNLKNAVKLLHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGS 133
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
L LMY C ++ EA R+FD+ V + + +F
Sbjct: 134 KLALMYTNCGDLKEASRVFDQ----------------------VKIEKALF--------- 162
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W +M+ K+ ++ LFKKM+ GV D V + SSL ++ G +H +I
Sbjct: 163 -WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYI 221
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
L++ + V +L+ Y K ++ A F + +DV++W ++I G + GL + L
Sbjct: 222 LKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGL 281
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI--EHFVC-- 359
VF QM GI+ + AT VSV A C S LI+ G R + V+ E C
Sbjct: 282 SVFVQMLFSGIEIDLATIVSVFAGCADSRLISLG-----RAVHCFGVKACFSREDRFCNT 336
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
L+D+ S+ G L A+ + M +SY ++++
Sbjct: 337 LLDMYSKCGDLDSAKVVFREMSGR-SVVSYTSMIAG 371
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 250/463 (53%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+G+ A+ K D +V NSLIH Y A VLF + + V +WN +++ Y
Sbjct: 189 VGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYV 248
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D EV+ +FK ++ D++TL+ + +AC RL + G+ + YA + G+ N
Sbjct: 249 KNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRN 308
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAKC E+D+A RL FD + +
Sbjct: 309 LATALVDMYAKCGELDKARRL--------------------------------FDRMHSR 336
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ G ++ + EAL +F +M V P++ MVSVLSAC+ L L+ G+ VH
Sbjct: 337 DVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVH 396
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I + ++ + TAL+D Y+KCG +++A+ F ++ TWT +I+G+A+ G
Sbjct: 397 SYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSR 456
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F M I+P + TF+ VL AC H L+ EG + F M Y + P IEH+ C+
Sbjct: 457 EALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCM 516
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGL+ +A +FI+ MP E + ++ALLSAC + ++G++ ++ L
Sbjct: 517 VDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHS 576
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+LLSN YA G W A R+ MKE K PG S+I+L+
Sbjct: 577 GNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELE 619
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 10/214 (4%)
Query: 193 VKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
++A PE+AL LF +M+D+ V+PD+ + + + +CS + +L GR V + + D
Sbjct: 146 LRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVD 205
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
FV +LI MY+ CG + A V F+ K V+ W MI G G E + +F M
Sbjct: 206 QFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLE 265
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQL--FRRMGGVYRVQPTIEHFVCLVDLLSRAGL 369
+E T +SV AC G G + + G+ R + LVD+ ++ G
Sbjct: 266 VRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLA---TALVDMYAKCGE 322
Query: 370 LYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
L +A M + D +++ A++S Y++ D
Sbjct: 323 LDKARRLFDRMHSRD-VVAWSAMISG---YTQSD 352
>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 741
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 162/464 (34%), Positives = 256/464 (55%), Gaps = 5/464 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H + + SD ++GN+LIH YG+ AR +FD + +DV SW ++ S Y +
Sbjct: 152 KEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNC 211
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
L +F ++ + G+ + +TL + AC+ L+ L G+ +H +A + G+ + +
Sbjct: 212 GLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVC 271
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI----V 178
+AL+ +YA+C + +A +FD M R++VS N ++ Y D +F ++ V
Sbjct: 272 SALVSLYARCLSVKQARLVFDLM-PHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGV 330
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+ D W +++ GC++ Q E+A+E+ +KM + G P++ + S L ACS L +L+ G+
Sbjct: 331 EADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKE 390
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH ++ ++ + D TAL+ MY+KCG L + F KDVV W TMI A +G
Sbjct: 391 VHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGN 450
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G E L +F M + GIKPN TF VL+ C HS L+ EG Q+F MG + V+P H+
Sbjct: 451 GREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYA 510
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VD+ SRAG L++A EFI+ MP E ++ ALL AC Y +L K AN + ++
Sbjct: 511 CMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPN 570
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ YV L N W+E +EAR MKE K PG S + +
Sbjct: 571 NPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQV 614
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 157/333 (47%), Gaps = 34/333 (10%)
Query: 34 FTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSA 93
F A+ LFD +P D + +TL+S + E + L+ L GI + + A
Sbjct: 82 FRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKA 141
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
C K VH A + G+ + NAL+ Y KCK ++ G+RR
Sbjct: 142 CGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVE---------GARR---- 188
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
VFD++V KD+V W SM V P L +F +M GV
Sbjct: 189 -------------------VFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGV 229
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
P+ + S+L ACS L +L+ GR +H F +++ + ++ FV +AL+ +Y++C S+++A +
Sbjct: 230 KPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARL 289
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F +DVV+W ++ ++ L +F QM KG++ +EAT+ +V+ C +G
Sbjct: 290 VFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQ 349
Query: 334 ITEGCQLFRRMG--GVYRVQPTIEHFVCLVDLL 364
+ ++ R+M G Q TI F+ +L
Sbjct: 350 TEKAVEMLRKMQNLGFKPNQITISSFLPACSIL 382
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 120/256 (46%), Gaps = 8/256 (3%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A+++FD I D +++ P EA+ L+ + G+ P V ++V AC +
Sbjct: 85 AQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGA 144
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+ + VH ++ + DAF+ ALI Y KC +E A F KDVV+WT+M
Sbjct: 145 SGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSM 204
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
N GL L VF +M G+KPN T S+L AC + G R + G
Sbjct: 205 SSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSG----RAIHGFAV 260
Query: 350 VQPTIEH-FVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406
IE+ FVC LV L +R + QA +MP D +S+ +L+A T E+D G
Sbjct: 261 RHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRD-VVSWNGVLTAYFTNREYDKGL 319
Query: 407 KVANNMMKLGNQSHEA 422
+ + M G ++ EA
Sbjct: 320 ALFSQMSSKGVEADEA 335
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 128/306 (41%), Gaps = 68/306 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + + +++V ++L+ Y R AR++FD MP RDV SWN +++ Y
Sbjct: 252 GRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFT 311
Query: 62 FSDSGEVLILFKQLIFEGIVAD-----------------------------------KIT 86
+ + L LF Q+ +G+ AD +IT
Sbjct: 312 NREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQIT 371
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+ AC+ LE L GK VHCY + L L AL+ MYAKC +++ + +FD
Sbjct: 372 ISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFD--- 428
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
I KD+V W +M+ E L LF+
Sbjct: 429 -----------------------------MICRKDVVAWNTMIIANAMHGNGREVLLLFE 459
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ-DAFVKTALIDMYSKC 265
M+ G+ P+ VLS CS ++ G + + ++++ + DA ++D++S+
Sbjct: 460 SMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRA 519
Query: 266 GSLEEA 271
G L EA
Sbjct: 520 GRLHEA 525
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 117/261 (44%), Gaps = 25/261 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MGK +H +V + L D+ +L++ Y + +R +FD + +DV +WNT++ I N
Sbjct: 387 MGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMI-IAN 445
Query: 61 DFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+G EVL+LF+ ++ GI + +T + S C+ + G + +G ++++
Sbjct: 446 AMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIF---NSMGRDHLV 502
Query: 120 ----NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLARE 172
N ++ ++++ + EA M + L+ Y ++EL ++
Sbjct: 503 EPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISAN 562
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
EI + + S+ + V AK EA E M + G+T CS
Sbjct: 563 KLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTP--------GCSW--- 611
Query: 233 LQYGRLVHRFIL--QNNITQD 251
LQ G VH F++ +NN+ D
Sbjct: 612 LQVGDRVHTFVVGDKNNMESD 632
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G A F D T +T+I GL NEA+R++ + +GIKP+ + F++V
Sbjct: 80 GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139
Query: 326 AACRHSG 332
AC SG
Sbjct: 140 KACGASG 146
>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Glycine max]
Length = 696
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/504 (31%), Positives = 271/504 (53%), Gaps = 46/504 (9%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H H + + ++V N L+ YG++ DAR LFD M R + SWNT++S Y D
Sbjct: 154 VHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRD 213
Query: 65 SGEVLILFKQLIFEGIVADKIT-----------------------------------LVI 89
S +FK++ EG+ + +T L +
Sbjct: 214 SLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAV 273
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ S CA + ++ +GK +H Y K G E L ++NAL+ Y K + M +A ++F E+ +
Sbjct: 274 VLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEI-KNK 332
Query: 150 NIVSLNILINGYIDMELVDLAREVF----------DEIVDKDIVLWRSMMHGCVKAKQPE 199
N+VS N LI+ Y + L D A F +V +++ W +++ G + E
Sbjct: 333 NLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGE 392
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
++LELF++M V + + SVLS C+ L+ L GR +H + ++N ++ + V LI
Sbjct: 393 KSLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLI 452
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
+MY KCG +E + F + +D+++W ++I G +GLG ALR F +M R +KP+
Sbjct: 453 NMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNI 512
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
TFV++L+AC H+GL+ G LF +M +R++P +EH+ C+VDLL RAGLL +A + ++
Sbjct: 513 TFVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRN 572
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
MP E + ALL++C Y + D+ ++ A+ ++ L ++ +++LLSN YA G W +
Sbjct: 573 MPIEPNEYVWGALLNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDS 632
Query: 440 AEARRNMKELQTRKKPGNSIIDLK 463
A R + + +K PG S I+++
Sbjct: 633 ARVRVSARTKGLKKIPGQSWIEVR 656
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 173/356 (48%), Gaps = 14/356 (3%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGS---WNTLMSI 58
+ LH+ + T ++ LI Y R A + AR +FD +P + WN+++
Sbjct: 47 ARQLHSQLVLTTAHRLPFLAARLIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRA 106
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
L L+ ++ G + D TL ++ AC+ L + + VHC+A ++G
Sbjct: 107 NVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNH 166
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD--- 175
L++ N L+ MY K M++A +LFD M R +IVS N +++GY A VF
Sbjct: 167 LHVVNELVGMYGKLGRMEDARQLFDGMFVR-SIVSWNTMVSGYALNRDSLGASRVFKRME 225
Query: 176 -EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
E + + V W S++ + +E LELFK M G+ E + VLS C+ ++ +
Sbjct: 226 LEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVD 285
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
+G+ +H ++++ FVK ALI Y K + +A F + K++V+W +I A
Sbjct: 286 WGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYA 345
Query: 295 NYGLGNEALRVFYQMERKG------IKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
GL +EA F ME+ ++PN ++ +V++ + G + +LFR+M
Sbjct: 346 ESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQM 401
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/369 (25%), Positives = 151/369 (40%), Gaps = 106/369 (28%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H +V K + ++V N+LI YG+ DA +F ++ +++ SWN L+S Y +
Sbjct: 287 GKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAE 346
Query: 62 F---------------SDS-------------------------GE-VLILFKQLIFEGI 80
SDS GE L LF+Q+ +
Sbjct: 347 SGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKV 406
Query: 81 VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALR 140
+A+ +T+ + S CA L L+ G+ +H YA + + + + N L+ MY KC + E
Sbjct: 407 MANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHL 466
Query: 141 LFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
+FD + R+++S N LI GY MHG E
Sbjct: 467 VFDNIEG-RDLISWNSLIGGY--------------------------GMHGL-----GEN 494
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
AL F +MI + PD V++LSACS + GR
Sbjct: 495 ALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGR----------------------- 531
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
+L + +VT ++ + +V + M++ L GL EA + M I+PNE
Sbjct: 532 ------NLFDQMVTEFRIE-PNVEHYACMVDLLGRAGLLKEATDIVRNMP---IEPNEYV 581
Query: 321 FVSVLAACR 329
+ ++L +CR
Sbjct: 582 WGALLNSCR 590
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH + + + +I VGN LI+ Y + F + ++FD + RD+ SWN+L+ Y
Sbjct: 428 LGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYG 487
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV 106
L F ++I + D IT V + SAC+ + G+ +
Sbjct: 488 MHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGRNL 533
>gi|224107245|ref|XP_002314420.1| predicted protein [Populus trichocarpa]
gi|222863460|gb|EEF00591.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 159/490 (32%), Positives = 261/490 (53%), Gaps = 40/490 (8%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LH V K D + V +L++ Y + +AR LFD+M ++V SWN ++ N +S
Sbjct: 83 LHGLVIKMMFDGFVLVSTNLLNMYCASSSLGEARALFDEMQEKNVVSWNVML---NGYSK 139
Query: 65 SG----------------------------------EVLILFKQLIFEGIVADKITLVIL 90
+G E L++++ ++ G+ ++T++ L
Sbjct: 140 AGFANLAKEVFEMIPDKDIVSWGTIIDGYVRVERLREALMMYRLMVSTGLGPSEVTMIDL 199
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SAC R + G+ +HC K + ++ ++ Y+ C ++EA E G + +
Sbjct: 200 ISACGRAMAIVEGQQLHCVVVKTSFDCYDFVQATVIHFYSACGRINEACFQL-EFGMKDH 258
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+ S N LI G+I ++D ARE+F+E+ ++D+ W +M+ G ++ QP ALELF +M+
Sbjct: 259 VASRNALIAGFIRNRIIDQARELFNEMPERDVFSWSTMISGYTQSDQPGMALELFHRMVT 318
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ P+E MVSV SA ++L L+ GR H ++ N+I + + ++IDMY+KCGS+
Sbjct: 319 SGIRPNEVTMVSVFSAIAALGTLKEGRWAHEYVHYNSIPLNDNLSASIIDMYAKCGSINT 378
Query: 271 ALVTFYKTDCK--DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
AL FY+ K V W T+I GLA +G +L ++ ++R+ IK + TF+ VL+AC
Sbjct: 379 ALEVFYQIRDKASTVSPWNTIICGLATHGHAKLSLEIYSDLQRRHIKLSAITFIGVLSAC 438
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
H+GL+ G F+ M Y + P I H+ C+VDLL +AG L + EE I+ MP + +
Sbjct: 439 CHAGLVGLGKSYFKSMKSKYNIDPDIRHYGCMVDLLGKAGRLEEVEELIRSMPMKADVVI 498
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+ LLSAC T+ +G++ A N+ KL + +LLSN YA G W + RR M+
Sbjct: 499 WGMLLSACKTHRNITIGERAAENLAKLDPSHGPSRILLSNLYADVGRWEDAFLVRRVMQS 558
Query: 449 LQTRKKPGNS 458
+ + PG S
Sbjct: 559 HRMHRLPGYS 568
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 176/347 (50%), Gaps = 36/347 (10%)
Query: 24 LIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IYNDFSDSGEVLILFKQLIFEGIV 81
+I Y + DAR LF+ MP + S+ T++ + NDF GE + ++K++ G+V
Sbjct: 1 MISGYVKSGNLDDARKLFEVMPQKGCVSYTTMIMGFVKNDFW--GEAIKVYKEMRSVGVV 58
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
+++T+ + SAC R+ ++ + +H K+ + + + LL MY + EA L
Sbjct: 59 PNEVTMASVISACCRVGRIWDCRMLHGLVIKMMFDGFVLVSTNLLNMYCASSSLGEARAL 118
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
FDEM +N+VS N+++NGY +LA+EVF+ I DKDIV W +++ G V+ ++ EA
Sbjct: 119 FDEM-QEKNVVSWNVMLNGYSKAGFANLAKEVFEMIPDKDIVSWGTIIDGYVRVERLREA 177
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L +++ M+ G+ P E M+ ++SAC + G+ +H +++ + FV+ +I
Sbjct: 178 LMMYRLMVSTGLGPSEVTMIDLISACGRAMAIVEGQQLHCVVVKTSFDCYDFVQATVIHF 237
Query: 262 YSKCGSLEEALVT-------------------------------FYKTDCKDVVTWTTMI 290
YS CG + EA F + +DV +W+TMI
Sbjct: 238 YSACGRINEACFQLEFGMKDHVASRNALIAGFIRNRIIDQARELFNEMPERDVFSWSTMI 297
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
G AL +F++M GI+PNE T VSV +A G + EG
Sbjct: 298 SGYTQSDQPGMALELFHRMVTSGIRPNEVTMVSVFSAIAALGTLKEG 344
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
+I Y K G+L++A F K V++TTMI G EA++V+ +M G+ PN
Sbjct: 1 MISGYVKSGNLDDARKLFEVMPQKGCVSYTTMIMGFVKNDFWGEAIKVYKEMRSVGVVPN 60
Query: 318 EATFVSVLAACRHSGLITEGCQLF 341
E T SV++AC G I + C++
Sbjct: 61 EVTMASVISACCRVGRIWD-CRML 83
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 167/474 (35%), Positives = 264/474 (55%), Gaps = 17/474 (3%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD-----ARVLFDKMPFRDVGSWNTLMS 57
K +HAH KT L+ F + L T AR F ++ + SWNT++
Sbjct: 32 KQIHAHFIKTGQIHHPLAAAELLKF---LTLSTQREIKYARKFFSQIHHPNCFSWNTIIR 88
Query: 58 IYNDFS-------DSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCY 109
D +S E L+ F ++ +G+V +K T + ACA+L ++ GK +H +
Sbjct: 89 ALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGF 148
Query: 110 ATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169
K+GL + + L+ +Y C M +A LF + N+V N++I+GY+ M +
Sbjct: 149 VVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRA 208
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
+RE+FD + +K +V W M+ GC + +EA+E+F M V P+ +VSVL A S
Sbjct: 209 SRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSR 268
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT-DCKDVVTWTT 288
L ++ G+ VH F +N I D + +ALIDMYSKCGS+++A+ F + K+ +TW+
Sbjct: 269 LGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSA 328
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
+I GLA +G +AL F++M++ G+ P++ ++ VL+AC H+GL+ EG ++ M +
Sbjct: 329 IIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIV 388
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
+ P IEH+ C+VDLL RAG L +AE+ I MP + + KALL AC + ++G+++
Sbjct: 389 GLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERI 448
Query: 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A +M +YV LSN +A EG+W V + R MKEL RK PG S I+L
Sbjct: 449 AKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIEL 502
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 135/304 (44%), Gaps = 66/304 (21%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHF--------------------------------YG 29
GK LH V K L SD +V ++L+ Y
Sbjct: 142 GKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYV 201
Query: 30 RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
RM +R LFD MP + V SWN ++S E + +F + + + +TLV
Sbjct: 202 RMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVS 261
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ A +RL + GK VH +A K +E + +AL+ MY+KC +D+A+++F+ + +++
Sbjct: 262 VLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKK 321
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N ++ + +I G MHG + +AL+ F +M
Sbjct: 322 NPITWSAIIGGL--------------------------AMHG-----RARDALDHFWRMQ 350
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK--TALIDMYSKCGS 267
GVTP + V + VLSACS ++ GR ++ + + N + ++ ++D+ + G
Sbjct: 351 QAGVTPSDVVYIGVLSACSHAGLVEEGRSIY-YHMVNIVGLLPRIEHYGCMVDLLGRAGC 409
Query: 268 LEEA 271
LEEA
Sbjct: 410 LEEA 413
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 159/458 (34%), Positives = 257/458 (56%), Gaps = 1/458 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K LHAH+ KT + + + F+ A+++F + +V WNT + + +
Sbjct: 32 KQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEG 91
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ + LF +L I D T + AC+RL + GK VH Y K+GL+ + ++
Sbjct: 92 DSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQ 151
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N ++ +YA C E+ A ++FD+M +R++++ NI+I + M + A ++F E+ ++++
Sbjct: 152 NMIVHLYALCGEIGVARKVFDKM-PQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNV 210
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W SM+ G + + +EA++LF +M D G+ P+E +V+VL AC+ + NL GR +H F
Sbjct: 211 RSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDF 270
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
++ ++ V LIDMY KCG LE+A F + + VV+W+ MI GLA +G +A
Sbjct: 271 SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDA 330
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F +M G+KPN TF+ +L AC H G++ +G + F M Y + P IEH+ C+VD
Sbjct: 331 LALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVD 390
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
L SRAGLL +A EFI MP + + ALL C + L ++ ++ KL +
Sbjct: 391 LFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGY 450
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
YV+LSN YA G W +VA R+ M++ +K PG S I
Sbjct: 451 YVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSI 488
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 149/345 (43%), Gaps = 68/345 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWN-------- 53
GK +H +V K L S++++ N ++H Y AR +FDKMP RDV +WN
Sbjct: 132 GKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVK 191
Query: 54 -----------------------TLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+++ Y S E + LF ++ G++ +++T+V +
Sbjct: 192 MGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAV 251
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
ACA + L G+ +H ++ + G E + + N L+ MY KC +++A R+FD M R
Sbjct: 252 LVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEER-- 309
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+V W +M+ G + E+AL LF KMI+
Sbjct: 310 ------------------------------TVVSWSAMIAGLAAHGRAEDALALFNKMIN 339
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLE 269
GV P+ + +L ACS + ++ GR + ++ I ++D++S+ G L+
Sbjct: 340 TGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQ 399
Query: 270 EALVTFYKTD-CKDVVTWTTMIEGL---ANYGLGNEALRVFYQME 310
EA + V W ++ G N L EA R +++
Sbjct: 400 EAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLD 444
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 12/224 (5%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H ++ + +I V N+LI Y + DA +FD M R V SW+ +++
Sbjct: 263 LGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLA 322
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYML 119
+ + L LF ++I G+ + +T + + AC+ + + G+ T+ G+ +
Sbjct: 323 AHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRI 382
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV------ 173
++ ++++ + EA M N V L+ G + + LA E
Sbjct: 383 EHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSK 442
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV--TP 215
D + D V+ ++ +A + E+ + K M D GV TP
Sbjct: 443 LDPLNDGYYVVLSNIY---AEAGRWEDVARVRKLMRDRGVKKTP 483
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 254/463 (54%), Gaps = 33/463 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ H V K SD++V N+LI FY F A +FD+ RDV +WN +++ +
Sbjct: 129 LGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHL 188
Query: 61 DFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ S + L ++ + + D++T+V L ACA+L L GK +H Y+ ++GL+ L
Sbjct: 189 NKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENL 248
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NA+L MY KC +++ A+EVF+ I +
Sbjct: 249 RVNNAILDMYCKCDDIES--------------------------------AQEVFNRIRE 276
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KD++ W SM+ G K+ +EAL LF+KM + DE +V VLSAC+ L G+ +
Sbjct: 277 KDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYI 336
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H I + I D ++TAL+DMY+KCGS++ AL F + ++V TW +I GLA +G G
Sbjct: 337 HLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHG 396
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+A+ +F QME + P++ TF+++L AC H+GL+ EG +F+ M ++++P +EH+ C
Sbjct: 397 EDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGC 456
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL RA + A FI+ MP + + + LL AC + FDL +K+ +++L S
Sbjct: 457 VVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDS 516
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YV+LSN YA W + R+ MK K PG S I+L
Sbjct: 517 CGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIEL 559
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 186/395 (47%), Gaps = 35/395 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG--RMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K HA + +T L + + LI F AR LF +M D NT++ Y
Sbjct: 28 KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E + L+ ++ G+ D T + +ACARL + G+ HC K G L
Sbjct: 88 RSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLF 147
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ Y C A +FDE + R++V+ NI+IN +++ L + A ++ DE+
Sbjct: 148 VINALIQFYHNCGSFGCACDVFDE-STVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKL 206
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D + PDE MVS++ AC+ L NL+ G+ +H
Sbjct: 207 D------------------------------NLRPDEVTMVSLVPACAQLGNLERGKFLH 236
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + + ++ V A++DMY KC +E A F + KDV++WT+M+ GLA G
Sbjct: 237 SYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQ 296
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F +M+ I+ +E T V VL+AC +G + +G + + + + + L
Sbjct: 297 EALALFQKMQLNKIELDEITLVGVLSACAQTGALDQG-KYIHLLIDKFEINCDLVLETAL 355
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
VD+ ++ G + A + + M + F ++ AL+
Sbjct: 356 VDMYAKCGSIDLALQVFRRMRVRNVF-TWNALIGG 389
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 164/482 (34%), Positives = 260/482 (53%), Gaps = 26/482 (5%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF-----YGRMALFTDARVLFDKMPFRDVGSWNTLMS 57
K +H+ KT + + + N ++ F +G M AR LFD +P V SWN +
Sbjct: 31 KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCY---ARQLFDTIPEPSVFSWNIMFK 87
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y+ + + L+ +++ + D T LF R L G+ +HC+ K GL+
Sbjct: 88 GYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDS 147
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY---------------- 161
+ NAL+ MY+ C +D A +FD M + ++V+ N +I+GY
Sbjct: 148 NVFAHNALINMYSLCGLIDMARGIFD-MSCKSDVVTWNAMISGYNRIKKDVISWTAIVTG 206
Query: 162 -IDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVM 220
++ VD AR+ F ++ ++D V W +M+ G ++ +EAL LF++M + PDE M
Sbjct: 207 FVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTM 266
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC 280
VSVL+AC+ L L+ G + +I +N + D FV ALIDMY KCG++E AL F
Sbjct: 267 VSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQ 326
Query: 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
+D TWT M+ GLA G G EAL +F QM + + P+E T+V VL+AC H+G++ EG +
Sbjct: 327 RDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKF 386
Query: 341 FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYS 400
F M + ++P I H+ C+VDLL +AG L +A E IK MP + I + ALL AC +
Sbjct: 387 FASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHK 446
Query: 401 EFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
+ ++ ++ +++L + YVL N YA W ++ E R+ M + +K PG S+I
Sbjct: 447 DAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLI 506
Query: 461 DL 462
++
Sbjct: 507 EM 508
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 134/324 (41%), Gaps = 89/324 (27%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH HV K LDS+++ N+LI+ Y L AR +FD DV +WN ++S YN
Sbjct: 132 LGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYN 191
Query: 61 --------------DFSDSGEV----------------------------------LILF 72
F ++G+V L+LF
Sbjct: 192 RIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLF 251
Query: 73 KQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKC 132
+++ I D+ T+V + +ACA+L L G+ + Y K ++ + NAL+ MY KC
Sbjct: 252 REMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKC 311
Query: 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC 192
++ AL +F+ + R D W +M+ G
Sbjct: 312 GNVEMALSIFNTLPQR--------------------------------DKFTWTAMVVGL 339
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQNN 247
EEAL +F +M+ VTPDE V VLSAC+ + G+ + R ++ N
Sbjct: 340 AINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPN 399
Query: 248 ITQDAFVKTALIDMYSKCGSLEEA 271
I ++D+ K G L+EA
Sbjct: 400 IAHYG----CMVDLLGKAGHLKEA 419
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 100/222 (45%), Gaps = 8/222 (3%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + ++ K + +D +VGN+LI Y + A +F+ +P RD +W T M +
Sbjct: 281 LGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTW-TAMVVGL 339
Query: 61 DFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT-KVGLEYM 118
+ G E L +F Q++ + D++T V + SAC + GK T + G+E
Sbjct: 340 AINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPN 399
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAREVFD 175
+ ++ + K + EA + M + N + L+ + D E+ + A E
Sbjct: 400 IAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQIL 459
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV--TP 215
E+ + ++ + + ++ EL + M+D G+ TP
Sbjct: 460 ELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTP 501
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 161/450 (35%), Positives = 261/450 (58%), Gaps = 2/450 (0%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ D+ +++ Y M +AR +FD+MP R+ SW+ +++ Y E L LF +
Sbjct: 247 EKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCR 306
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+I EG + + SA A +E L G +H + TK+G E + + ++L+ MY KC E
Sbjct: 307 MIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGE 366
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+ LFD + +N+VS N ++ GY ++ A+ +F+ + ++ V W +++ G +
Sbjct: 367 TKDGRFLFDTI-LEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLD 425
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+Q +E E+F +MI G P++ S+L AC+S ++L G+ +H I++ I D +V
Sbjct: 426 CEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYV 485
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER-KG 313
TAL DMY+K G +E + F + K+ V+WT MI+GLA GL E+L +F +ME+
Sbjct: 486 GTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSS 545
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
I PNE F++VL AC HSGL+ +G F M VY ++P HF C+VD+LSRAG L++A
Sbjct: 546 IAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFEA 605
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE 433
EEFI MP + + ++ ALLS C TY +L ++VA + ++ ++ YVLLSN YA
Sbjct: 606 EEFIYSMPFQPETNAWAALLSGCKTYKNEELAERVAGKLWEMAEKNCAGYVLLSNIYASA 665
Query: 434 GHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
G W +V + R+ MK +K G S ++++
Sbjct: 666 GRWRDVLKVRKLMKAKGLKKSGGCSWVEIR 695
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 110/401 (27%), Positives = 199/401 (49%), Gaps = 41/401 (10%)
Query: 28 YGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87
YGR+ ++ F++ PF++V SW +S Y S E + LF +L+ + +K+T
Sbjct: 131 YGRV---RESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTF 187
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ ACA L G +V K G E+ L + N+L+ + + E+ A +FD M
Sbjct: 188 TSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRM-E 246
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
+++VS +++ Y++M+ + AR +FDE+ ++ V W +M+ ++ PEE+L LF +
Sbjct: 247 EKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCR 306
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
MI EG P+ S+LSA +S+ LQ G +H + + +D FV ++LIDMY KCG
Sbjct: 307 MIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGE 366
Query: 268 -------------------------------LEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+EEA F ++ V+W+ +I G +
Sbjct: 367 TKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDC 426
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
+E VF +M G PN++TF S+L AC + + +G L G + ++ +
Sbjct: 427 EQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLH---GKIVKLGIQCDT 483
Query: 357 FV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+V L D+ +++G + +++ MP +++ +S+ A++
Sbjct: 484 YVGTALTDMYAKSGDIESSKKVFNRMPKKNE-VSWTAMIQG 523
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 142/344 (41%), Gaps = 78/344 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDK------------------ 43
G +H HVTK + D++V +SLI Y + D R LFD
Sbjct: 335 GMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSL 394
Query: 44 -------------MPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
MP R+ SW+ +++ + D E+ +F ++I G + +K T L
Sbjct: 395 NGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSL 454
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
ACA L GK +H K+G++ + AL MYAK +++ + ++F+ M ++N
Sbjct: 455 LCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRM-PKKN 513
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM-I 209
VS W +M+ G ++ EE+L LF++M
Sbjct: 514 EVS-------------------------------WTAMIQGLAESGLAEESLTLFEEMEK 542
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF-VK------TALIDMY 262
+ P+E + ++VL ACS + LV + + N + + +K T ++DM
Sbjct: 543 TSSIAPNEVMFLAVLFACS------HSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDML 596
Query: 263 SKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRV 305
S+ G L EA Y + + W ++ G Y A RV
Sbjct: 597 SRAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELAERV 640
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 5/226 (2%)
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L + N ++ + +DEA +LFDEM + N +S LI+G++ V + F+
Sbjct: 87 LVVHNCMISANVQRGNLDEARKLFDEM-PQTNEISWTALISGFMKYGRVRESMWYFERNP 145
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+++V W + + G V+ EA++LF K+++ V P++ SV+ AC++L + G
Sbjct: 146 FQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMS 205
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
V I++ D V +LI + + G + A F + + KDVV+WT +++
Sbjct: 206 VLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDE 265
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
EA R+F +M ++ NE ++ +++A SG E +LF RM
Sbjct: 266 LGEARRIFDEMPQR----NEVSWSAMIARYCQSGYPEESLRLFCRM 307
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 82/209 (39%), Gaps = 41/209 (19%)
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY-------------- 296
D V +I + G+L+EA F + + ++WT +I G Y
Sbjct: 86 DLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNP 145
Query: 297 -----------------GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339
G EA+++F ++ +KPN+ TF SV+ AC + G G
Sbjct: 146 FQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMS 205
Query: 340 LFRRMGGVYRVQPTIEHFVC----LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ + V+ EH + L+ L R G ++ A E M +D +S+ A+L
Sbjct: 206 VLGLI-----VKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKD-VVSWTAILDL 259
Query: 396 CITYSEFDLGKKVANNMMKLGNQSHEAYV 424
+ E +++ + M + S A +
Sbjct: 260 YVEMDELGEARRIFDEMPQRNEVSWSAMI 288
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 160/463 (34%), Positives = 256/463 (55%), Gaps = 33/463 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDA-RVLFDKMPFRDVGSWNTLMSIY 59
+G+ +H TK L SD++VGN+LI YG+ L +A + +FD M + V SWN L+ Y
Sbjct: 226 LGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGY 285
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
SD + L L+ Q+ G+ D T+ L AC+R++ LHYG+ +H +A + GL
Sbjct: 286 AQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDP 345
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ +LL +Y C + A LFD M R
Sbjct: 346 FIGISLLSLYICCGKPFAAQVLFDGMEHR------------------------------- 374
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+V W M+ G + P+EA+ LF++M+ +G+ P E ++ V ACS LS L+ G+ +
Sbjct: 375 -SLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKEL 433
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H F L+ ++T+D FV +++IDMY+K G + + F + KDV +W +I G +G G
Sbjct: 434 HCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRG 493
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL +F +M R G+KP++ TF +L AC H+GL+ +G + F +M ++ ++P +EH+ C
Sbjct: 494 KEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTC 553
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VD+L RAG + A I+ MP + + +LLS+C + LG+KVAN +++L +
Sbjct: 554 VVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEK 613
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
E YVL+SN +A G W +V R MK++ +K G S I++
Sbjct: 614 PENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEV 656
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 161/330 (48%), Gaps = 33/330 (10%)
Query: 1 MGKGLHAHVT-KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+G+ LH V+ T +D + +I Y +D+R++FDK+ +++ WN ++S Y
Sbjct: 123 VGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAY 182
Query: 60 NDFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ + +F +LI D TL + ACA L L G+ +H ATK+ L
Sbjct: 183 TRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSD 242
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + NAL+ MY KC ++EA++ VFD +
Sbjct: 243 VFVGNALIAMYGKCGLVEEAVK-------------------------------RVFDLMD 271
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K + W +++ G + P +AL+L+ +M D G+ PD + S+L ACS + +L YG
Sbjct: 272 TKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEE 331
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H F L+N + D F+ +L+ +Y CG A V F + + +V+W MI G + GL
Sbjct: 332 IHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGL 391
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAAC 328
+EA+ +F QM GI+P E + V AC
Sbjct: 392 PDEAINLFRQMLSDGIQPYEIAIMCVCGAC 421
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 199 EEALELFKKMIDEGV---TPDEEVMVSVLSACSSLSNLQYGRLVHRFI-LQNNITQDAFV 254
+EAL+ ++ D+ V E M +L AC +++ GR +H + D +
Sbjct: 84 KEALDFLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVL 143
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM-ERKG 313
T +I MYS CGS ++ + F K K++ W ++ L +A+ +F ++
Sbjct: 144 NTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTE 203
Query: 314 IKPNEATFVSVLAACRHSGLITEG 337
KP+ T V+ AC +GL+ G
Sbjct: 204 HKPDNFTLPCVIKAC--AGLLDLG 225
>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 952
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 160/461 (34%), Positives = 251/461 (54%), Gaps = 5/461 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H K + D++V +L++ Y +A+ +FD MP R+V +WN+L S Y +
Sbjct: 362 GKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVN 421
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L +F++++ G+ D +T++ + AC+ L+ L GK +H +A + G+ + +
Sbjct: 422 CGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFV 481
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI---- 177
NALL +YAKC + EA +FD + R + S N ++ Y + + +F ++
Sbjct: 482 CNALLSLYAKCVCVREAQVVFDLI-PHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDE 540
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
V D + W ++ GCVK + EEA+E+F+KM G PDE + S+L ACS L+ G+
Sbjct: 541 VKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGK 600
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H ++ ++ D AL+DMY+KCG L + F KDV +W TMI +G
Sbjct: 601 EIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHG 660
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G EAL +F +M +KP+ ATF VL+AC HS L+ EG Q+F M + V+P EH+
Sbjct: 661 NGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHY 720
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VD+ SRAG L +A FI+ MP E I++KA L+ C Y +L K A + ++
Sbjct: 721 TCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDP 780
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNS 458
YV L N W+E ++ R+ MKE K PG S
Sbjct: 781 NGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCS 821
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/411 (28%), Positives = 208/411 (50%), Gaps = 48/411 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H V + + D++V ++ ++FY + +A+ +FD MP RDV +WN+L S Y +
Sbjct: 160 GKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVN 219
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L +F++++ +G+ D +T+ + SAC+ L+ L GK +H +A K G+ + +
Sbjct: 220 CGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFV 279
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ +Y C + EA + VFD + ++
Sbjct: 280 SNALVNLYESCLCVREA--------------------------------QAVFDLMPHRN 307
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W S+ V P++ L +F++M GV PD M S+L ACS L +L+ G+ +H
Sbjct: 308 VITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHG 367
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F +++ + +D FV TAL+++Y+ C + EA F ++VVTW ++ N G +
Sbjct: 368 FAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQK 427
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACR-----HSGLITEGCQLFRRMGGVYRVQPTIEH 356
L VF +M G+KP+ T +S+L AC SG + G + R G V V
Sbjct: 428 GLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAV--RHGMVEDV------ 479
Query: 357 FVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
FVC L+ L ++ + +A+ ++P + S+ +L+A T E++ G
Sbjct: 480 FVCNALLSLYAKCVCVREAQVVFDLIPHRE-VASWNGILTAYFTNKEYEKG 529
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 194/403 (48%), Gaps = 41/403 (10%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K H T+ + SD+ +GN+ IH YG+ AR +FD + RDV +WN+L + Y +
Sbjct: 60 KQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNC 119
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ L +F+++ + A+ +T+ + C+ L+ L GK +H + + G+ + +
Sbjct: 120 GFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVS 179
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
+A + YAKC + EA + VFD + +D+
Sbjct: 180 SAFVNFYAKCLCVREA--------------------------------QTVFDLMPHRDV 207
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W S+ V P++ L +F++M+ +GV PD + +LSACS L +L+ G+ +H F
Sbjct: 208 VTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGF 267
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
L++ + ++ FV AL+++Y C + EA F ++V+TW ++ N G +
Sbjct: 268 ALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKG 327
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH-FVC-- 359
L VF +M G+KP+ S+L AC + G + + G +E FVC
Sbjct: 328 LNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSG----KTIHGFAVKHGMVEDVFVCTA 383
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
LV+L + + +A+ +MP + +++ + LS+C F
Sbjct: 384 LVNLYANCLCVREAQTVFDLMPHRN-VVTWNS-LSSCYVNCGF 424
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 40/332 (12%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
E + ++ GI DK + + ACA K H AT+ G+ +++ NA +
Sbjct: 23 EAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFI 82
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
Y KCK ++ A R+FD++ V +D+V W
Sbjct: 83 HAYGKCKCVEGARRVFDDL--------------------------------VARDVVTWN 110
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
S+ V P++ L +F+KM V + + S+L CS L +L+ G+ +H F++++
Sbjct: 111 SLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRH 170
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ +D FV +A ++ Y+KC + EA F +DVVTW ++ N G + L VF
Sbjct: 171 GMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVF 230
Query: 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH-FV--CLVDL 363
+M G+KP+ T +L+AC + G + + G +E+ FV LV+L
Sbjct: 231 REMVLDGVKPDPVTVSCILSACSDLQDLKSG----KAIHGFALKHGMVENVFVSNALVNL 286
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ +A+ +MP + I++ +L S
Sbjct: 287 YESCLCVREAQAVFDLMPHRN-VITWNSLASC 317
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 7/207 (3%)
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
P EA++++ G+ PD+ V ++V AC++ + + H + + D + A
Sbjct: 21 PNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNA 80
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
I Y KC +E A F +DVVTW ++ N G + L VF +M +K N
Sbjct: 81 FIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKAN 140
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEE 375
T S+L C + G ++ G V R + FV V+ ++ + +A+
Sbjct: 141 PLTVSSILPGCSDLQDLKSGKEIH---GFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQT 197
Query: 376 FIKIMPAEDKFISYKALLSACITYSEF 402
+MP D +++ + LS+C F
Sbjct: 198 VFDLMPHRD-VVTWNS-LSSCYVNCGF 222
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 10/221 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MGK +H +V + D D+ N+L+ Y + + +R +FD MP +DV SWNT++
Sbjct: 598 MGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANG 657
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L LF++++ + D T + SAC+ + G + + ++++
Sbjct: 658 MHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIF---NSMSRDHLVE 714
Query: 121 ME----NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAREV 173
E ++ +Y++ ++EA M ++ + G Y ++EL ++ +
Sbjct: 715 PEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKK 774
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
EI + ++ + V AK EA ++ K M + G+T
Sbjct: 775 LFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGIT 815
>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 786
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 164/497 (32%), Positives = 279/497 (56%), Gaps = 34/497 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
GK +H+ + K L ++ V NSL++ Y + A+ +FD+M RD+ SWN +++++
Sbjct: 165 GKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQ 224
Query: 60 --------------------------NDFSDSG---EVLILFKQLIFEGIVA-DKITLVI 89
+ F+ G L +F +++ + +++ D+ TL
Sbjct: 225 VGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLAS 284
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA LEKL GK +H + G + + NAL+ MY++C ++ A RL ++ G++
Sbjct: 285 VLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKD 344
Query: 150 -NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
I L++GYI + ++ A+ +F + D+D+V W +M+ G + EA+ LF+ M
Sbjct: 345 LKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSM 404
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+ G P+ + ++LS SSL++L +G+ +H +++ V ALI MY+K G++
Sbjct: 405 VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNI 464
Query: 269 EEALVTFYKTDC-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
A F C +D V+WT+MI LA +G EAL +F M +G++P+ T+V V +A
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSA 524
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C H+GL+ +G Q F M V ++ PT+ H+ C+VDL RAGLL +A+EFI+ MP E +
Sbjct: 525 CTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVV 584
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
++ +LLSAC + DLGK A ++ L ++ AY L+N Y+ G W E A+ R++MK
Sbjct: 585 TWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMK 644
Query: 448 ELQTRKKPGNSIIDLKH 464
+ + +K+ G S I++KH
Sbjct: 645 DGRVKKEQGFSWIEVKH 661
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 133/489 (27%), Positives = 217/489 (44%), Gaps = 74/489 (15%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H V K+ L +Y+ N+L++ Y + AR LFD+MP R SWNT++S Y+ D
Sbjct: 36 VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95
Query: 65 SGEVLILFKQL-------------------------------IFEGIVADKITLVILFSA 93
F QL + EGI + TL + ++
Sbjct: 96 MDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLAS 155
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
A + GK VH + K+GL +++ N+LL MYAKC + A +FD M R+I S
Sbjct: 156 VAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRM-VVRDISS 214
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI-DEG 212
N +I ++ + +DLA F+++ ++DIV W SM+ G + AL++F KM+ D
Sbjct: 215 WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSL 274
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE--- 269
++PD + SVLSAC++L L G+ +H I+ V ALI MYS+CG +E
Sbjct: 275 LSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETAR 334
Query: 270 ------------------------------EALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
+A F +DVV WT MI G +G
Sbjct: 335 RLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSY 394
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMGGVYRVQPTIEH 356
EA+ +F M G +PN T ++L+ ++ G Q+ + G +Y V +
Sbjct: 395 GEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVS--- 451
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L+ + ++AG + A ++ E +S+ +++ A + + ++ M+ G
Sbjct: 452 -NALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEG 510
Query: 417 -NQSHEAYV 424
H YV
Sbjct: 511 LRPDHITYV 519
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 134/331 (40%), Gaps = 74/331 (22%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVL-------------------- 40
+GK +H+H+ T D V N+LI Y R AR L
Sbjct: 297 IGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDG 356
Query: 41 -------------FDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87
F + RDV +W ++ Y GE + LF+ ++ G + TL
Sbjct: 357 YIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTL 416
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ S + L L +GK +H A K G Y +++ NAL+ MYAK + A R FD +
Sbjct: 417 AAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRC 476
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
R+ VS W SM+ + EEALELF+
Sbjct: 477 ERDTVS-------------------------------WTSMIIALAQHGHAEEALELFET 505
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT-----ALIDMY 262
M+ EG+ PD V V SAC+ + GR F + ++ D + T ++D++
Sbjct: 506 MLMEGLRPDHITYVGVFSACTHAGLVNQGR--QYFDMMKDV--DKIIPTLSHYACMVDLF 561
Query: 263 SKCGSLEEALVTFYKTDCK-DVVTWTTMIEG 292
+ G L+EA K + DVVTW +++
Sbjct: 562 GRAGLLQEAQEFIEKMPIEPDVVTWGSLLSA 592
>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
Length = 705
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 161/506 (31%), Positives = 265/506 (52%), Gaps = 44/506 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
M K LH HV + + ++VGN LI Y ++ DAR +FDKM + V SWNT++S Y
Sbjct: 157 MCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYA 216
Query: 61 DFSDSGEVLILFKQLIFEGIVADKIT---------------------------------- 86
D +F Q+ EG+ + +T
Sbjct: 217 YNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAE 276
Query: 87 -LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
L ++ S CA L L+ G+ +H Y K G L +NAL+ +Y K + +A +LF EM
Sbjct: 277 MLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEM 336
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEI--------VDKDIVLWRSMMHGCVKAKQ 197
+N+VS N LI+ + + + D A E+ ++ + +++ W +++ G
Sbjct: 337 -KVKNLVSWNALISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGL 395
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
EE+LE+F+KM V + + SVLS C+ L+ L GR +H +++ + + V
Sbjct: 396 GEESLEVFRKMQLANVKANSVTIASVLSICAMLAALNLGREMHGHVIRARMDDNVLVGNG 455
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LI+MY+KCGS + + F K + +D ++W +MI G +GLG +AL F M + G +P+
Sbjct: 456 LINMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGTHGLGKDALATFNHMIKSGYRPD 515
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI 377
TF++ L+AC H+GL+ EG LF +M ++++P IEH+ C+VDLL RAGL+ +A I
Sbjct: 516 GVTFIAALSACSHAGLVAEGHWLFSQMRQNFKIEPEIEHYACMVDLLGRAGLVEEASNII 575
Query: 378 KIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWT 437
K MP E + +LL++C + + DL ++ A + L ++ +++LLSN +A W
Sbjct: 576 KGMPMEPNAYIWSSLLNSCRMHKDTDLAEEAAAKISNLNSKITGSHMLLSNIFAASCRWE 635
Query: 438 EVAEARRNMKELQTRKKPGNSIIDLK 463
+ A R + + +K PG S I++K
Sbjct: 636 DSARVRISARAKGLKKVPGWSWIEVK 661
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 188/355 (52%), Gaps = 16/355 (4%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGS---WNTLM--S 57
K +H+ T +V L+ Y R L +DAR +F PF + WN+++ +
Sbjct: 55 KQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRAN 114
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+Y+ + E L L+ ++ G++ D T +L A + L + K +HC+ + G +
Sbjct: 115 VYHGYCI--EALQLYGKMRNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQN 172
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L++ N L+ MYAK + MD+A ++FD+M +++VS N +++GY V+ A +F ++
Sbjct: 173 HLHVGNELIGMYAKLERMDDARKVFDKM-RIKSVVSWNTMVSGYAYNYDVNGASRMFHQM 231
Query: 178 ----VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
V+ + V W S++ + EE + LF KM +GV P E++ VLS C+ L+ L
Sbjct: 232 ELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATL 291
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
G+++H ++++ F K ALI +Y K G + +A F++ K++V+W +I
Sbjct: 292 NSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSF 351
Query: 294 ANYGLGNEALRVFYQMER----KGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
A G+ ++AL + Q+E+ +KPN T+ +++ GL E ++FR+M
Sbjct: 352 AESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKM 406
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 103/205 (50%), Gaps = 10/205 (4%)
Query: 157 LINGYIDMELVDLAREVFDEI---VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
L++ Y LV AR+VF + +LW S++ V EAL+L+ KM + GV
Sbjct: 76 LVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGV 135
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
D +L A S+L + +H ++Q V LI MY+K +++A
Sbjct: 136 LGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARK 195
Query: 274 TFYKTDCKDVVTWTTMIEGLA-NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F K K VV+W TM+ G A NY + N A R+F+QME +G++PN T+ S+L++ G
Sbjct: 196 VFDKMRIKSVVSWNTMVSGYAYNYDV-NGASRMFHQMELEGVEPNPVTWTSLLSSHARCG 254
Query: 333 LITEGCQLF--RRMGGVYRVQPTIE 355
+ E LF RM G V PT E
Sbjct: 255 HLEETMVLFCKMRMKG---VGPTAE 276
>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Vitis vinifera]
Length = 667
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 156/464 (33%), Positives = 263/464 (56%), Gaps = 6/464 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K + V + DSDI+V N+LI +Y R + AR+LFD+M RD+ SWN++++ Y+
Sbjct: 157 LAKEVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYS 216
Query: 61 D---FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ D E + K L G+ + +T+V + ACA+ L +G VH + + +E
Sbjct: 217 QGGFYEDCKE--LYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEM 274
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
++ N+L+ +YAKC +D A LF+EM S ++ V+ +++GY+ VD A ++F E+
Sbjct: 275 DVSAHNSLIGLYAKCGSLDYARELFNEM-SNKDEVTYGSIVSGYMTHGFVDKAMDLFREM 333
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+ + W +++ G V+ E LEL ++M + G P+ + S+L S SNL+ G+
Sbjct: 334 KNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSILPTFSCFSNLKGGK 393
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H + ++N + +V T++ID Y+K G L A F ++ + ++ WT +I + +G
Sbjct: 394 AIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISAYSAHG 453
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
N ALR+F M G +P+ TF +VLAAC HSG++ E ++F M Y QP +EH+
Sbjct: 454 DANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDEMFLKYGFQPCVEHY 513
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+V +LSRAG+L +A EFI MP E + ALL+ + +LGK V +++ +
Sbjct: 514 ACMVGVLSRAGMLSEAAEFICKMPIEPNAKVWGALLNGVSVSGDVELGKFVCDHLFNMEP 573
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
++ YV+++N Y+ G W E R MK++ +K PG S I+
Sbjct: 574 ENTGNYVIMANLYSQAGRWEEAENIREKMKKIGLKKIPGTSWIE 617
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 164/343 (47%), Gaps = 46/343 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM---SI 58
K LHA + ++L D ++ + LI FY + +A +FDK+ +++ SWN ++ SI
Sbjct: 53 AKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVFDKILDKNIFSWNAMLIGYSI 112
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL-EKLHYGKTVHCYATKVGLEY 117
+N + +L + D T+ + A + L K V C+ + G +
Sbjct: 113 HNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALSVLFPDSILAKEVQCFVLRHGFDS 172
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + NAL+ Y++C E A LFD M R+IVS N +I GY
Sbjct: 173 DIFVVNALITYYSRCDEYGIARILFDRM-HDRDIVSWNSMIAGY---------------- 215
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYG 236
+ E+ EL++KM+D G+ P+ +VSVL AC+ ++L +G
Sbjct: 216 ---------------SQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFG 260
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
VH+FI++ + D +LI +Y+KCGSL+ A F + KD VT+ +++ G +
Sbjct: 261 MKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTH 320
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339
G ++A+ +F +M+ P +T+ +V+ SGL+ C
Sbjct: 321 GFVDKAMDLFREMK----NPRLSTWNAVI-----SGLVQNNCN 354
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
++ CS L+ + +H I+ +++T D F+ + LI YSK L EA F K K+
Sbjct: 40 LIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVFDKILDKN 99
Query: 283 VVTWTTMIEGLA 294
+ +W M+ G +
Sbjct: 100 IFSWNAMLIGYS 111
>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
Length = 766
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 158/463 (34%), Positives = 245/463 (52%), Gaps = 33/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K LD D+YVG SL Y R ARV F ++ D+ SWN++++ Y+
Sbjct: 273 GEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSV 332
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L+LF ++ G+ D IT+ L AC + L++G+ +H Y K+GL+ +++
Sbjct: 333 EGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSV 392
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+LL MYA+C ++ A+ +VF EI D+D
Sbjct: 393 CNSLLSMYARCSDLSSAM--------------------------------DVFHEIKDQD 420
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W S++ C + PEE L+LF + + D + +VLSA + L + + VH
Sbjct: 421 VVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHA 480
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGN 300
+ + + D + LID Y+KCGSL++A+ F + +DV +W+++I G A +G
Sbjct: 481 YAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAK 540
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F +M GI+PN TF+ VL AC G + EGC + M Y + PT EH C+
Sbjct: 541 EALDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCI 600
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL+RAG L +A FI MP E I +K LL+A +++ ++GK+ A ++ +
Sbjct: 601 VDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHS 660
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AYVLL N YA G+W E A ++ M+ +K PG S + LK
Sbjct: 661 AAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLK 703
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 202/411 (49%), Gaps = 50/411 (12%)
Query: 2 GKGLHAHVTKTA-------LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNT 54
G+ +H H+ ++ L + +GN LI YGR A AR +FD+MP R+ SW +
Sbjct: 63 GRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWAS 122
Query: 55 LMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG 114
+++ + +G+ L LF ++ G AD+ L AC L + G+ VH +A K
Sbjct: 123 VIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSE 182
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF 174
L ++NAL+ MY+K NG LVD +F
Sbjct: 183 RGSDLIVQNALVTMYSK---------------------------NG-----LVDDGFMLF 210
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT-PDEEVMVSVLSACSSLSNL 233
+ I DKD++ W S++ G + EAL++F+KMI EG P+E S AC ++ +
Sbjct: 211 ERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSW 270
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
+YG +H ++ + +D +V +L DMY++ +L+ A V FY+ + D+V+W +++
Sbjct: 271 EYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAY 330
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
+ GL +EAL +F +M G++P+ T +L AC + G R+ Y V+
Sbjct: 331 SVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHG-----RLIHSYLVKLG 385
Query: 354 IEH--FVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYS 400
++ VC L+ + +R L A + + +D +++ ++L+AC ++
Sbjct: 386 LDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQD-VVTWNSILTACAQHN 435
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 157/361 (43%), Gaps = 59/361 (16%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L SAC+RL L G+ VH + L+ + D L
Sbjct: 50 LVSACSRLRSLPQGRRVHRH-----------------LVASSSSSPDAQLA--------G 84
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N V N LI Y D AR+VFDE+ ++ V W S++ V+ + +AL LF M+
Sbjct: 85 NTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSML 144
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
G D+ + S + AC+ L ++ GR VH L++ D V+ AL+ MYSK G ++
Sbjct: 145 RSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVD 204
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK-PNEATFVSVLAAC 328
+ + F + KD+++W ++I G A G EAL+VF +M +G PNE F S AC
Sbjct: 205 DGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRAC 264
Query: 329 RHSGL-------------------ITEGCQL------FRRMGGV----YRVQ-PTIEHFV 358
G + GC L F+ + YR++ P + +
Sbjct: 265 GAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWN 324
Query: 359 CLVDLLSRAGLLYQAEEFIKIM---PAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
+V+ S GLL +A M I+ + LL AC+ G+ + + ++KL
Sbjct: 325 SIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKL 384
Query: 416 G 416
G
Sbjct: 385 G 385
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNN-------ITQDAFVKTALIDMYSKCGSLEEALV 273
+++SACS L +L GR VHR ++ ++ + + + LI MY +C + + A
Sbjct: 48 AALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQ 107
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F + ++ V+W ++I G +AL +F M R G ++ S + AC G
Sbjct: 108 VFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGD 167
Query: 334 ITEGCQL 340
+ G Q+
Sbjct: 168 VGTGRQV 174
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 13/181 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP-FRDVGSWNTLMSIY 59
M K +HA+ K L D + N+LI Y + DA LF+ M RDV SW++L+ Y
Sbjct: 474 MVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGY 533
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-----G 114
F + E L LF ++ GI + +T + + +AC+R+ ++ G CY + G
Sbjct: 534 AQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEG----CYYYSIMEPEYG 589
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAR 171
+ + ++ + A+ ++ EA D+M +I+ L+ + DME+ A
Sbjct: 590 IVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAA 649
Query: 172 E 172
E
Sbjct: 650 E 650
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 249/456 (54%), Gaps = 1/456 (0%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
H V K ++VGN+L+H Y D+R FD+M R+V SWN++++ Y ++
Sbjct: 133 HGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNT 192
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
E LF+ + +G++AD+ TLV L AC+ L +GK VH + G L + NAL
Sbjct: 193 REACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANAL 252
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+ MY KC ++ A FD M +N VS ++ +D AR+ F++I +K I+ W
Sbjct: 253 VDMYGKCGDLLMAHTCFDMM-PFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISW 311
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+M+ V+ + EAL+L+ +M G+ PDE + +VLSAC L +L G+++H I
Sbjct: 312 NAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRD 371
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
N + +L+DMY++CG ++ A+ F + K+V++W +I LA +G +AL
Sbjct: 372 NFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMF 431
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F M P+E TFV++L+AC H GL+ G F+ M VY V+P +EH+ C+VDLL
Sbjct: 432 FRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLG 491
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
R G L +A + IK MP + + ALL AC + +GK+V +++L S +VL
Sbjct: 492 RGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVL 551
Query: 426 LSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+SN W ++ R+ M+E +K G S I+
Sbjct: 552 ISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIE 587
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/390 (29%), Positives = 178/390 (45%), Gaps = 65/390 (16%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR LFD++P D +N+L+ Y + E L L + +I GI+ ++ TL L ACAR
Sbjct: 63 ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
++ + H K+G + + NALL YA + ++ R FDEM RN+VS N
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEM-VDRNVVSWNS 181
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
+INGY +A EA LF+ M +G+ D
Sbjct: 182 MINGY-------------------------------AQAGNTREACSLFEGMRRQGLLAD 210
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
E +VS+L ACS+ NL++G+LVH +L D + AL+DMY KCG L A F
Sbjct: 211 EFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFD 270
Query: 277 KTDCKDVVTWTTMIEGLANY-------------------------------GLGNEALRV 305
K+ V+WT+M+ LA G +EAL +
Sbjct: 271 MMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDL 330
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
+ +M+ G+ P+E T +VL+AC G + G + + + P + F L+D+ +
Sbjct: 331 YNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFH-NPGVALFNSLLDMYA 389
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
R G + A MP+++ IS+ A++ A
Sbjct: 390 RCGQVDTAISLFSEMPSKN-VISWNAIIGA 418
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 119/248 (47%), Gaps = 24/248 (9%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
AR++FD I D D ++ S++ + P+EAL L + MI G+ P+E + +L AC+
Sbjct: 63 ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+ ++ + H +++ FV AL+ Y+ GSL ++ F + ++VV+W +M
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 182
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR-----------HSGLITEGC 338
I G A G EA +F M R+G+ +E T VS+L AC HS L+ GC
Sbjct: 183 INGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGC 242
Query: 339 QLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT 398
++ + LVD+ + G L A +MP ++ +S+ ++L A
Sbjct: 243 RIDLILANA------------LVDMYGKCGDLLMAHTCFDMMPFKNA-VSWTSMLCALAK 289
Query: 399 YSEFDLGK 406
+ D +
Sbjct: 290 RASIDAAR 297
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 144/345 (41%), Gaps = 68/345 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRD------------- 48
GK +H+H+ D+ + N+L+ YG+ A FD MPF++
Sbjct: 230 GKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAK 289
Query: 49 ------------------VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+ SWN ++S Y E L L+ ++ G+ D+ TL +
Sbjct: 290 RASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAV 349
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SAC +L L GK +H + + N+LL MYA+C ++D A+ LF EM S +N
Sbjct: 350 LSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPS-KN 408
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
++S N +I MHG + ++AL F+ M+
Sbjct: 409 VISWNAIIGALA--------------------------MHG-----RAQDALMFFRSMVS 437
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NNITQDAFVKTALIDMYSKCGSLE 269
+ PDE V++LSAC+ L+ G+ + + N+ ++D+ + G L
Sbjct: 438 DAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLA 497
Query: 270 EALVTFYKTDCK-DVVTWTTMIEGLANYG---LGNEALRVFYQME 310
+A+ + DVV W ++ +G +G + ++ ++E
Sbjct: 498 KAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELE 542
>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 172/533 (32%), Positives = 277/533 (51%), Gaps = 72/533 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH V ++ D D+YVG SLI FY + +AR++FD++ + +W T+++ Y
Sbjct: 170 GAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTK 229
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S L LF Q+ +V D+ + + SAC+ LE L GK +H Y + G E +++
Sbjct: 230 CGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSV 289
Query: 122 ENALLLMYAKCKEMD-------------------------------EALRLFDEM----- 145
N L+ Y KC + EA++LF EM
Sbjct: 290 VNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGW 349
Query: 146 --------------GSRR---------------NIVSLNILINGYIDME-----LVDLAR 171
GSR N+ S + NG IDM L+D A+
Sbjct: 350 KPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLID-AK 408
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
+VFD + +++++ + +M+ G ++ EALELF +M P+E ++++A S+L+
Sbjct: 409 KVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLA 468
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
+L++G+ H +++ + FV AL+DMY+KCGS+EEA F + +DVV W +MI
Sbjct: 469 SLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMIS 528
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
A +G EAL +F +M ++GI+PN TFV+VL+AC H+G + +G F M G + ++
Sbjct: 529 THAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPG-FGIK 587
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
P EH+ C+V LL R+G L++A+EFI+ MP E I +++LLSAC +LGK A
Sbjct: 588 PGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEM 647
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ + +Y+LLSN +A +G W +V + R M + K+PG S I++ +
Sbjct: 648 AISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNN 700
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 197/396 (49%), Gaps = 43/396 (10%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H + + L SD ++ N LI+ + +ARV+FDKMP +++ +W++++S+Y+
Sbjct: 69 KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 128
Query: 63 SDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E L++F L + G ++ L + AC +L + G +H + + G + + +
Sbjct: 129 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 188
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ Y+K ++EA +FD++ +K
Sbjct: 189 GTSLIDFYSKNGNIEEARLVFDQLS--------------------------------EKT 216
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +++ G K + +LELF +M + V PD V+ SVLSACS L L+ G+ +H
Sbjct: 217 AVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHA 276
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++L+ D V LID Y+KC ++ F + K++++WTTMI G E
Sbjct: 277 YVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWE 336
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE--HFV- 358
A+++F +M R G KP+ SVL +C + +G Q+ Y ++ +E FV
Sbjct: 337 AMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVH-----AYTIKANLESDEFVK 391
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
L+D+ +++ LL A++ +M AE ISY A++
Sbjct: 392 NGLIDMYAKSNLLIDAKKVFDVM-AEQNVISYNAMI 426
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 6/162 (3%)
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
P ++L S + + + +++H I+ + + D F+ LI++ SK ++ A V
Sbjct: 47 PKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVV 106
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK-GIKPNEATFVSVLAACRHSGL 333
F K K+++TW++M+ + G EAL VF ++RK G PNE SV+ AC G+
Sbjct: 107 FDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGV 166
Query: 334 ITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQA 373
+ +G QL G V R + +V L+D S+ G + +A
Sbjct: 167 VEKGAQLH---GFVVRSGFDQDVYVGTSLIDFYSKNGNIEEA 205
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 159/463 (34%), Positives = 253/463 (54%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH+ + K + SD ++G LI Y + DAR++F MP RD+ +WN ++S ++
Sbjct: 230 LGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHS 289
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E LF + EGI ++ TL + + A L+ + + +H + K G E+
Sbjct: 290 QNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNY 349
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ Y KC +++A R VF+E
Sbjct: 350 VVNSLIDTYGKCGHVEDATR--------------------------------VFEESPIV 377
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VL+ S++ + Q EEAL L+ +M D G+ PD V S+L+AC+SLS + G+ VH
Sbjct: 378 DLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVH 437
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
IL+ D F +L++MY+KCGS+E+A F + + +V+W+ MI GLA +G G
Sbjct: 438 VHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGK 497
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL++F QM + G+ PN T VSVL AC H+GL+ E F M ++ ++P EH+ C+
Sbjct: 498 EALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACM 557
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLL RAG L A E + MP + + + ALL A + DLG++ A ++ L +
Sbjct: 558 IDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKS 617
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLL+N YA G W +VA RR MK+ + +K+PG S +++K
Sbjct: 618 GTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVK 660
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 131/455 (28%), Positives = 211/455 (46%), Gaps = 71/455 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V T DSD +V NSL+ Y + F DAR LFD +P R V SWN L S Y
Sbjct: 28 LGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYV 87
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
GE + LF ++ GI ++ +L + + C LE G+ +H Y K+G +
Sbjct: 88 HSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAF 147
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
NAL+ MYAK +++A +FDE I
Sbjct: 148 SANALVDMYAKVGILEDASSVFDE--------------------------------IAKP 175
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIV W +++ GCV + ALEL ++M G+ P+ + S L AC+ ++ + GR +H
Sbjct: 176 DIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLH 235
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ ++ D+F+ LIDMYSKC S+++A + F +D++ W +I G +
Sbjct: 236 SSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDE 295
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAA---------CR--HSGLITEG------------ 337
EA +F M +GI N+ T +VL + CR H+ + G
Sbjct: 296 EAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLI 355
Query: 338 -----CQLFRRMGGVYRVQPTIE--HFVCLVDLLSRAGLLYQAEEFIKI-MPAEDKFISY 389
C V+ P ++ F LV ++ G Q EE +++ + +D+ I
Sbjct: 356 DTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDG---QGEEALRLYLEMQDRGIKP 412
Query: 390 -----KALLSACITYSEFDLGKKVANNMMKLGNQS 419
+LL+AC + S ++ GK+V +++K G S
Sbjct: 413 DSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMS 447
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 148/319 (46%), Gaps = 38/319 (11%)
Query: 79 GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEA 138
GI ++ + AC + L GK VH G + + N+L+++YAKC +A
Sbjct: 5 GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64
Query: 139 LRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP 198
LFD + R++VS N L + Y+ S MHG
Sbjct: 65 RSLFDAI-PDRSVVSWNALFSCYV-----------------------HSDMHG------- 93
Query: 199 EEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTAL 258
EA+ LF M+ G+ P+E + S+++ C+ L + GR +H ++++ DAF AL
Sbjct: 94 -EAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANAL 152
Query: 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
+DMY+K G LE+A F + D+V+W +I G + + AL + +M + G+ PN
Sbjct: 153 VDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNM 212
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF--VCLVDLLSRAGLLYQAEEF 376
T S L AC L G QL + ++ + F V L+D+ S+ + A
Sbjct: 213 FTLSSALKACAGMALRELGRQLHSSL---IKMDMGSDSFLGVGLIDMYSKCNSMDDARLV 269
Query: 377 IKIMPAEDKFISYKALLSA 395
K+MP D I++ A++S
Sbjct: 270 FKLMPERD-MIAWNAVISG 287
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 6/190 (3%)
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
G+ +E SVL AC+ +L G+ VH ++ D FV +L+ +Y+KCG +A
Sbjct: 5 GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
F + VV+W + + + EA+ +F+ M GI+PNE + S++ C +
Sbjct: 65 RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVC--T 122
Query: 332 GLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
GL + Q + G + ++ + F LVD+ ++ G+L A + D +S+
Sbjct: 123 GL-EDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPD-IVSW 180
Query: 390 KALLSACITY 399
A+++ C+ +
Sbjct: 181 NAIIAGCVLH 190
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 259/531 (48%), Gaps = 69/531 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + K + D+ V N L+ Y + D R +FDKM RD SWNT++ Y+
Sbjct: 294 GDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQ 353
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + LF +++ + D +T+ + AC L L +GK VH Y G E
Sbjct: 354 VGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTA 412
Query: 122 ENALLLMYAKCKEM-------------------------------DEALRLFD------- 143
N L+ MYAKC + DEA++LF
Sbjct: 413 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVK 472
Query: 144 ------------------------------EMGSRRNIVSLNILINGYIDMELVDLAREV 173
+MG NIV N L++ Y + + +V
Sbjct: 473 PDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKV 532
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
F+ + +DI+ W +++ CV ++ L + +M EGVTPD M+S+L CS L+
Sbjct: 533 FENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAK 592
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
+ G+ +H I + + D V LI+MYSKCGSL + F KDVVTWT +I
Sbjct: 593 RQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISAC 652
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
YG G +A+R F +ME GI P+ FV+++ AC HSGL+ EG F RM Y+++P
Sbjct: 653 GMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPR 712
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
IEH+ C+VDLLSR+ LL +AE+FI MP + + ALLSAC + ++ ++V+ ++
Sbjct: 713 IEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERII 772
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+L YVL+SN YA G W +V R+++K +K PG S +++++
Sbjct: 773 ELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQN 823
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 206/419 (49%), Gaps = 42/419 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
M K +H V SD+Y+GN+LI Y R AR +F++MP RDV SWN+L+S YN
Sbjct: 192 MAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 251
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L ++ + G+V D T+ + AC L + G +H K+G++ +
Sbjct: 252 ANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVI 311
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N LL MY K + + R+FD+M R+ VS N +I GY + L
Sbjct: 312 VNNGLLSMYCKFNGLIDGRRIFDKM-VLRDAVSWNTMICGYSQVGLY------------- 357
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
EE+++LF +M+++ PD + S+L AC L +L++G+ VH
Sbjct: 358 ------------------EESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVH 398
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + D LI+MY+KCG+L + F CKD V+W +MI G +
Sbjct: 399 DYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFD 458
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL---FRRMGGVYRVQPTIEHF 357
EA+++F +M + +KP+ T+V +L+ G + G +L +MG I
Sbjct: 459 EAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMG----FNSNIVVS 513
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
LVD+ ++ G + + + + M A D I++ ++++C+ + +LG ++ + M G
Sbjct: 514 NTLVDMYAKCGEMGDSLKVFENMKARD-IITWNTIIASCVHSEDCNLGLRMISRMRTEG 571
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 112/424 (26%), Positives = 184/424 (43%), Gaps = 38/424 (8%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD-KMPFRDVGSWNTLMSIYNDFS 63
LH+ + L + LI Y T + +F P +V WN+++
Sbjct: 94 LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNG 153
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
E L L+ + + D T + +ACA L K++H +G L + N
Sbjct: 154 LFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGN 213
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ MY + ++D+A ++F+EM R++VS N LI+GY
Sbjct: 214 ALIDMYCRFNDLDKARKVFEEM-PLRDVVSWNSLISGY------------------NANG 254
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W EALE++ + + GV PD M SVL AC L +++ G ++H I
Sbjct: 255 YW-------------NEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLI 301
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ I +D V L+ MY K L + F K +D V+W TMI G + GL E++
Sbjct: 302 EKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESI 361
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM-GGVYRVQPTIEHFVCLVD 362
++F +M + KP+ T S+L AC H G + G + M Y T + L++
Sbjct: 362 KLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNI--LIN 418
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
+ ++ G L ++E M +D +S+ ++++ I FD K+ M
Sbjct: 419 MYAKCGNLLASQEVFSGMKCKDS-VSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVT 477
Query: 423 YVLL 426
YV+L
Sbjct: 478 YVML 481
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 122/272 (44%), Gaps = 33/272 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH + K +S+I V N+L+ Y + D+ +F+ M RD+ +WNT+++
Sbjct: 493 LGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCV 552
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D L + ++ EG+ D T++ + C+ L GK +H K+GLE +
Sbjct: 553 HSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVP 612
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N L+ MY+KC GS RN + +VF + K
Sbjct: 613 VGNVLIEMYSKC-------------GSLRN-------------------SFQVFKLMKTK 640
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLV 239
D+V W +++ C + ++A+ F +M G+ PD V+++ ACS ++ G
Sbjct: 641 DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYF 700
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
HR I ++D+ S+ L++A
Sbjct: 701 HRMKKDYKIEPRIEHYACVVDLLSRSALLDKA 732
>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 602
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/449 (35%), Positives = 253/449 (56%), Gaps = 2/449 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
++Y N ++ Y ++ AR LFDKMP +DV SWNT++ Y + L +++L
Sbjct: 116 NLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELR 175
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
GI ++ + L + C ++++L K H G L + +++L YAKC EM
Sbjct: 176 RLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMG 235
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+A RLFDEM R++++ +++GY V+ ARE+FD + +K+ V W S++ G +
Sbjct: 236 DARRLFDEM-IIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHD 294
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
+ALELF KM+ + PD+ S L A +S+++L +G+ +H ++++ NI + V +
Sbjct: 295 LGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVS 354
Query: 257 ALIDMYSKCGSLEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
+LIDMYSKCG LE + F D DVV W T+I LA +G G EA+++F M R G+K
Sbjct: 355 SLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMK 414
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
P+ T + +L AC HSGL+ EG +L+ + + V P EH+ CL+DLL RAG
Sbjct: 415 PDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMN 474
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
++ MP + + ALL C + + G++VA +++L QS AYVLLS+ +A G
Sbjct: 475 QLEKMPCKPNDEIWNALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGR 534
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDLKH 464
W V R+ M E RK S I++++
Sbjct: 535 WELVENVRQLMNERHVRKDRAISWIEIEN 563
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/372 (25%), Positives = 174/372 (46%), Gaps = 38/372 (10%)
Query: 79 GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN-MENALLLMYAKCKEMDE 137
GI TL L CA + L GK VH + GL+ + N L+ MY+KC +
Sbjct: 45 GIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPS 104
Query: 138 ALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ 197
A ++FDEM S RN+ S N +++GY + + AR++FD++ +KD+V W +M+ K+
Sbjct: 105 AYKVFDEM-STRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGF 163
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
+AL ++++ G+ +E +L+ C + L+ + H +L + + ++
Sbjct: 164 CNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSS 223
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG-------------------- 297
++D Y+KC + +A F + +DV+ WTTM+ G A +G
Sbjct: 224 VLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAW 283
Query: 298 -----------LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
LG++AL +F +M I+P++ TF S L A + G Q+ G
Sbjct: 284 TSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIH---GY 340
Query: 347 VYR--VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDL 404
+ R ++P L+D+ S+ G L +M + + + ++S+ +
Sbjct: 341 LIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQE 400
Query: 405 GKKVANNMMKLG 416
++ ++M++LG
Sbjct: 401 AIQMFDDMVRLG 412
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 127/313 (40%), Gaps = 63/313 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K H V S++ + +S++ Y + + DAR LFD+M RDV +W T++S Y
Sbjct: 201 LSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYA 260
Query: 61 DFSD-------------------------------SGEVLILFKQLIFEGIVADKITLVI 89
+ D + L LF +++ I D+ T
Sbjct: 261 QWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSS 320
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
A A + L++GK +H Y + + + ++L+ MY+KC ++ +FD MG +
Sbjct: 321 CLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKW 380
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
++ VLW +++ + + +EA+++F M+
Sbjct: 381 DV-------------------------------VLWNTIISSLAQHGRGQEAIQMFDDMV 409
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
G+ PD ++ +L+ACS +Q G RL + + + LID+ + G
Sbjct: 410 RLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHF 469
Query: 269 EEALVTFYKTDCK 281
+ + K CK
Sbjct: 470 DTLMNQLEKMPCK 482
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 167/466 (35%), Positives = 265/466 (56%), Gaps = 8/466 (1%)
Query: 1 MGKGLHAHVTKTALDS--DIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLM 56
+G+ LHA + T + + ++ N+L+ FY AR +FD++P +D W TLM
Sbjct: 31 IGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLM 90
Query: 57 SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
+ + S E L++F ++ G+ D++TLV LF CARL + G H K+GL
Sbjct: 91 GCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLG 150
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ NA++ MYAK M EA R+F EM + ++VS ++++G I E V R VFDE
Sbjct: 151 GVEKACNAVMDMYAKSGLMGEARRVFYEMKGQ-SVVSWTVILDGVIRSEGVRNGRVVFDE 209
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI-DEGVTPDEEVMVSVLSACSSLSNLQY 235
+ +++ V W M+ G + + +E+ L ++MI D + + + S+L+ACS +L
Sbjct: 210 MPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMM 269
Query: 236 GRLVHRFILQNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
GR VH + L+ + + V TA++DMY+KCG + A F K ++VV+W M+ GLA
Sbjct: 270 GRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLA 329
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
+GLG AL +F QM ++ KP++ TF SVL+AC HSGL+ +GC F + VY + P +
Sbjct: 330 MHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKV 388
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
EH+ C+VDLL RAG L +AE ++ MP + +LL +C + + LG+ + +++
Sbjct: 389 EHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQ 448
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
L Q+ E ++LLSN YAL G R+ +K+ +K PG S I
Sbjct: 449 LDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSI 494
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 172/459 (37%), Positives = 238/459 (51%), Gaps = 36/459 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H KT L D++V NS +H Y A +FD MP RDV SW L+S Y
Sbjct: 204 KQIHTLAVKTDLWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKA 263
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ + LF ++ + + T V + AC +L L+ GK +H +K L +
Sbjct: 264 GLFNDAVALFLRM---DVAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVS 320
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N L+ MY KC+ + + A+ +FDEI +KDI
Sbjct: 321 NTLMDMYVKCESVTD--------------------------------AKRLFDEIPEKDI 348
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W SM+ G V+ + P+E+L+LF +M+ G PD ++ SVLSAC+SL L YGR VH +
Sbjct: 349 VSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYGRWVHEY 408
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
I + I D + T+LIDMY+KCG +E A F K++ TW I GLA G G EA
Sbjct: 409 IDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGLAINGHGQEA 468
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM-GGVYRVQPTIEHFVCLV 361
L+ F + G +PNE TF++V +AC HSGL+ EG F++M Y + P +EH+ C+V
Sbjct: 469 LKQFGYLVESGTRPNEITFLAVFSACCHSGLVDEGRSYFKQMTSPPYNLSPWLEHYGCMV 528
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RA L+ +A E I MP ALLSA TY +L ++ + Q
Sbjct: 529 DLLCRAELVEEAMELINKMPMPPDVQIIGALLSASSTYGNVELTPEMLKTVRNFECQESG 588
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
YVLLSN+YA W EV RR MKE K PG+S+I
Sbjct: 589 VYVLLSNWYANNKKWAEVRSVRRLMKEKGISKAPGSSLI 627
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GKG+H V+K ++ V N+L+ Y + TDA+ LFD++P +D+ SW +++S
Sbjct: 300 LGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLV 359
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L LF +++ G D + L + SACA L L YG+ VH Y +++ ++
Sbjct: 360 QYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYGRWVHEYIDHSRIKWDVH 419
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +L+ MYAKC G I+M A+++F+ + K
Sbjct: 420 IGTSLIDMYAKC---------------------------GCIEM-----AQQMFNLLPSK 447
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+I W + + G +EAL+ F +++ G P+E ++V SAC + GR
Sbjct: 448 NIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACCHSGLVDEGR 504
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 11/205 (5%)
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
P A+ +++ ++ G PD + +VL +C+ S + + +H ++ ++ D FV+ +
Sbjct: 165 PWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVKTDLWCDMFVQNS 224
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
+ +YS CG A F +DVV+WT +I G GL N+A+ +F +M+ + PN
Sbjct: 225 FVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFLRMD---VAPN 281
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV---CLVDLLSRAGLLYQAE 374
ATFVS+L AC G + G + + G+ P + V L+D+ + + A+
Sbjct: 282 AATFVSILGACGKLGCLNLG----KGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAK 337
Query: 375 EFIKIMPAEDKFISYKALLSACITY 399
+P +D +S+ +++S + Y
Sbjct: 338 RLFDEIPEKD-IVSWTSMISGLVQY 361
>gi|414872719|tpg|DAA51276.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 601
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 158/459 (34%), Positives = 255/459 (55%), Gaps = 3/459 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HAHV + L S +Y+ NSLI Y A ++F D S N ++S Y +
Sbjct: 140 GRQVHAHVVVSGLHSRVYLRNSLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVN 199
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV--GLEYML 119
+ + L F+ + GIV D+ T V L + C RL+ G++VH + ++ L
Sbjct: 200 EGCTLKALWFFRDMASRGIVVDQYTAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGL 259
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NALL MYAKC M+ A +F E G ++ +S N +++G+++ ++DLA F E
Sbjct: 260 ILVNALLDMYAKCGRMNAAKTIFGETG-EKDAISWNTMVSGFVNAGMLDLASRFFSEAPS 318
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D++ W +++ G + K E ++LF M+ V D+ V+++SA + +L + + V
Sbjct: 319 RDLISWNALLAGYARYKSFNEVMKLFHDMVASCVNLDKVTAVTLISAATGKGSLNHAKSV 378
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++++ QDAF+ +AL+DMY KCG+++ A F K KDV WT MI GLA G G
Sbjct: 379 HGWVVKEFDHQDAFLASALVDMYCKCGNVKTAYYVFEKALDKDVTLWTAMISGLAFNGHG 438
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL +F +M+ + + PN T ++VL+AC HSGL+ EGC++F M Y ++P IEHF C
Sbjct: 439 TEALELFCKMQTEVVAPNGVTLLAVLSACSHSGLLDEGCKIFDAMKQRYSIEPGIEHFGC 498
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL+R+G L A + MP + ++L+A + ++ + + +++L
Sbjct: 499 MVDLLARSGRLIDALALARRMPMRPSRSIWGSILNASLAGQNIEVAEIASKELLRLDPAE 558
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNS 458
YVLLSN +A GHW + R+ M+ RK G S
Sbjct: 559 EGGYVLLSNLHAAGGHWNHSDKVRQIMERKGLRKLAGAS 597
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 37/244 (15%)
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
L++ ++ ++ D+ T + L + +E+L G+ VH + GL + + N+L+ MY
Sbjct: 111 LYRSMLASSVLPDQQTFLALLRS---VERLSAGRQVHAHVVVSGLHSRVYLRNSLIKMYI 167
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
+++ A +F + VS NI+++GY++
Sbjct: 168 DAGDVETAELMFRS-ALVLDTVSCNIMLSGYVN--------------------------E 200
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
GC +AL F+ M G+ D+ V++L+ C L N GR VH I++
Sbjct: 201 GCTL-----KALWFFRDMASRGIVVDQYTAVALLTCCGRLKNELIGRSVHGVIVRRMDAG 255
Query: 251 DA--FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
D + AL+DMY+KCG + A F +T KD ++W TM+ G N G+ + A R F +
Sbjct: 256 DHGLILVNALLDMYAKCGRMNAAKTIFGETGEKDAISWNTMVSGFVNAGMLDLASRFFSE 315
Query: 309 MERK 312
+
Sbjct: 316 APSR 319
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 36/246 (14%)
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
+A L++ M+ V PD++ +++L S+ L GR VH ++ + + +++ +LI
Sbjct: 107 QAAALYRSMLASSVLPDQQTFLALLR---SVERLSAGRQVHAHVVVSGLHSRVYLRNSLI 163
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
MY G +E A + F D V+ M+ G N G +AL F M +GI ++
Sbjct: 164 KMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVVDQY 223
Query: 320 TFVSVLAACRH--SGLITEGCQ--LFRRMG----GVYRVQPTIEHFV------------- 358
T V++L C + LI + RRM G+ V ++ +
Sbjct: 224 TAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGLILVNALLDMYAKCGRMNAAKTIFG 283
Query: 359 -----------CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
+V AG+L A F P+ D IS+ ALL+ Y F+ K
Sbjct: 284 ETGEKDAISWNTMVSGFVNAGMLDLASRFFSEAPSRD-LISWNALLAGYARYKSFNEVMK 342
Query: 408 VANNMM 413
+ ++M+
Sbjct: 343 LFHDMV 348
>gi|226531396|ref|NP_001147435.1| methyltransferase small domain [Zea mays]
gi|195611352|gb|ACG27506.1| methyltransferase small domain [Zea mays]
Length = 601
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 158/459 (34%), Positives = 256/459 (55%), Gaps = 3/459 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HAHV + L S +Y+ NSLI Y A ++F D S N ++S Y +
Sbjct: 140 GRQVHAHVVVSGLHSRVYLRNSLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVN 199
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV--GLEYML 119
+ + L F+ + GIV D+ T V L + C RL+ G++VH + ++ L
Sbjct: 200 EGCTLKALWFFRDMASRGIVVDQYTAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGL 259
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NALL MYAKC M+ A +F E G ++ +S N +++G+++ ++DLA F E
Sbjct: 260 ILVNALLDMYAKCGRMNAAKTIFGEAG-EKDAISWNTMVSGFVNAGMLDLASRFFSEAPS 318
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D++ W +++ G + K E ++LF M+ V D+ V+++SA + +L + + V
Sbjct: 319 RDLISWNALLAGYARYKGFNEVMKLFHDMLASCVNLDKVTAVTLISAAAGKGSLNHAKSV 378
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++++ QDAF+ +AL+DMY KCG+++ A F K KDV WT MI GLA G G
Sbjct: 379 HGWVVKEFGHQDAFLASALVDMYCKCGNVKIAYYVFEKALDKDVTLWTAMISGLAFNGHG 438
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL +F++M+ + + PN T ++VL+AC HSGL+ EGC++F M Y ++P IEHF C
Sbjct: 439 TEALELFWKMQTEVVAPNGVTLLAVLSACSHSGLLDEGCKIFDAMKQRYSIEPGIEHFGC 498
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL+R+G L A + M + ++L+A + ++ + + +++L
Sbjct: 499 MVDLLARSGRLIDALALARRMQMRPSRSIWGSILNASLAGQNIEVAEIASKELLRLDPAE 558
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNS 458
YVLLSN +A GHW + R+NM+ RK G S
Sbjct: 559 EGGYVLLSNLHAAGGHWNHSDKVRQNMERKGLRKLAGAS 597
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 37/244 (15%)
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
L++ ++ ++ D+ T + L + +E L G+ VH + GL + + N+L+ MY
Sbjct: 111 LYRSMLASSVLPDQQTFLALLRS---VEHLSAGRQVHAHVVVSGLHSRVYLRNSLIKMYI 167
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
+++ A +F + VS NI+++GY++
Sbjct: 168 DAGDVETAELMFRS-ALVLDTVSCNIMLSGYVN--------------------------E 200
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
GC +AL F+ M G+ D+ V++L+ C L N GR VH I++
Sbjct: 201 GCTL-----KALWFFRDMASRGIVVDQYTAVALLTCCGRLKNELIGRSVHGVIVRRMDAG 255
Query: 251 DA--FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
D + AL+DMY+KCG + A F + KD ++W TM+ G N G+ + A R F +
Sbjct: 256 DHGLILVNALLDMYAKCGRMNAAKTIFGEAGEKDAISWNTMVSGFVNAGMLDLASRFFSE 315
Query: 309 MERK 312
+
Sbjct: 316 APSR 319
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 36/247 (14%)
Query: 199 EEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTAL 258
+A L++ M+ V PD++ +++L S+ +L GR VH ++ + + +++ +L
Sbjct: 106 PQAAALYRSMLASSVLPDQQTFLALLR---SVEHLSAGRQVHAHVVVSGLHSRVYLRNSL 162
Query: 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
I MY G +E A + F D V+ M+ G N G +AL F M +GI ++
Sbjct: 163 IKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVVDQ 222
Query: 319 ATFVSVLAACRH--SGLITEGCQ--LFRRMG----GVYRVQPTIEHFV------------ 358
T V++L C + LI + RRM G+ V ++ +
Sbjct: 223 YTAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGLILVNALLDMYAKCGRMNAAKTIF 282
Query: 359 ------------CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406
+V AG+L A F P+ D IS+ ALL+ Y F+
Sbjct: 283 GEAGEKDAISWNTMVSGFVNAGMLDLASRFFSEAPSRD-LISWNALLAGYARYKGFNEVM 341
Query: 407 KVANNMM 413
K+ ++M+
Sbjct: 342 KLFHDML 348
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 164/460 (35%), Positives = 252/460 (54%), Gaps = 5/460 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + + LD + L Y + + LF + V W ++ +
Sbjct: 49 IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGL 108
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ L + Q++ +G+ + T FS+ +L + GK +H A K+G + L +
Sbjct: 109 HEQALNFYAQMLTQGVEPNAFT----FSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTG 164
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
LL +YA+ ++ A +LFD M +++VSL ++ Y +D AR +FD + ++D V
Sbjct: 165 LLDVYARGGDVVSAQQLFDTM-PEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC 223
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W M+ G + P EAL LF++M+ P+E ++SVLSAC L L+ GR VH +I
Sbjct: 224 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE 283
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
N I + V TAL+DMYSKCGSLE+A + F K D KDVV W +MI G A +G EAL+
Sbjct: 284 NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQ 343
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+F M R G+ P TF+ +L+AC HSG +TEG +F +M Y ++P IEH+ C+V+LL
Sbjct: 344 LFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLL 403
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
RAG + QA E +K M E + + LL AC + + LG+K+ ++ + Y+
Sbjct: 404 GRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYI 463
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
LLSN YA G+W VA R MK+ +K+PG S I++ +
Sbjct: 464 LLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNN 503
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 139/327 (42%), Gaps = 75/327 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGR----------------------MALFT---- 35
GK LH+ K DSD+YV L+ Y R A+ T
Sbjct: 143 GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAK 202
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
ARVLFD M RD WN ++ Y E L+LF++++ +++T++ +
Sbjct: 203 HGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSV 262
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SAC +L L G+ VH Y G+++ +++ AL+ MY+KC +++A +FD
Sbjct: 263 LSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFD------- 315
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+I DKD+V W SM+ G +EAL+LFK M
Sbjct: 316 -------------------------KIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCR 350
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT------ALIDMYSK 264
G+ P + +LSAC G + + + N + + ++ ++++ +
Sbjct: 351 MGLHPTNITFIGILSACG-----HSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGR 405
Query: 265 CGSLEEALVTFYKTDCK-DVVTWTTMI 290
G +E+A + + D V W T++
Sbjct: 406 AGHVEQAYELVKNMNIEPDPVLWGTLL 432
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 87/182 (47%), Gaps = 1/182 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+++ + +++VG +L+ Y + DAR++FDK+ +DV +WN+++ Y
Sbjct: 275 GRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAM 334
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLN 120
S E L LFK + G+ IT + + SAC + G + + + G+E +
Sbjct: 335 HGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIE 394
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++ + + +++A L M + V L+ + L ++ + +VD+
Sbjct: 395 HYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQ 454
Query: 181 DI 182
++
Sbjct: 455 NL 456
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/480 (33%), Positives = 256/480 (53%), Gaps = 20/480 (4%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD-ARVLFDKMPFRDVGSWNTLMSIYND 61
K LHA KT D +I F + D AR +F +MP + WNT++ I +
Sbjct: 36 KQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRILAE 95
Query: 62 FSD---SGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+D E L+LF ++ +G V ++ T + ACAR +L GK +H K G
Sbjct: 96 TNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHE 155
Query: 118 MLNMENALLLMYAKCKEMDEALRLF---------------DEMGSRRNIVSLNILINGYI 162
+ + L+ MY C M++A LF D+ N+V NI+I+G +
Sbjct: 156 DEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQV 215
Query: 163 DMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS 222
+ + A+ +FDE+ + +V W M+ G + EA+ LF++M + P+ +VS
Sbjct: 216 RLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVS 275
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
VL A + + L+ G+ +H + +N + D + +AL+DMYSKCGS+++AL F ++
Sbjct: 276 VLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRN 335
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
+TW+ +I A +G +A+ F+ M + G+ PN+ ++ +L+AC H+GL+ EG F
Sbjct: 336 AITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFS 395
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
M V +QP IEH+ C+VDLL RAG L +AEE I+ MP E + +KALL AC +
Sbjct: 396 HMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNL 455
Query: 403 DLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+G++VA +M+L +YV LSN YA G+W VA R MK + RK PG S I++
Sbjct: 456 KMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEI 515
>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Vitis vinifera]
Length = 545
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 166/499 (33%), Positives = 264/499 (52%), Gaps = 40/499 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHAH+ L Y L+ FY ++AR LFDK+P ++ W L
Sbjct: 46 GRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACAR 105
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L F ++ EG+ ++ L + AC L G+ +H K E +
Sbjct: 106 RGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYI 165
Query: 122 ENALLLMYAKCKEMDEALRLFD----------------------------------EMGS 147
+AL+ MY+KC +++A R+FD + G
Sbjct: 166 ISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGV 225
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEI----VDKDIVLWRSMMHGCVKAKQPEEALE 203
+ N+VS N LI G+ + + EVF + V+ D+V W S++ G V+ E +
Sbjct: 226 KPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFD 285
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
FK+M+D+G P + S+L AC++++NL++G+ +H + + + +D +V++AL+DMY+
Sbjct: 286 AFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYA 345
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KCG + EA + FY ++ VTW ++I G AN+G NEA+ +F QME K + TF +
Sbjct: 346 KCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTA 405
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
VL AC H+G++ G LFR+M YR++P +EH+ C+VDLL RAG L +A + IK MP E
Sbjct: 406 VLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVE 465
Query: 384 -DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442
DKF+ + ALL AC + +L + A ++ +L +S + +LLSN YA G W A+
Sbjct: 466 PDKFV-WGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKM 524
Query: 443 RRNMKELQTRKKPGNSIID 461
++ MK+ + K PG S I+
Sbjct: 525 KKMMKQRKFGKFPGCSWIE 543
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 164/350 (46%), Gaps = 39/350 (11%)
Query: 95 ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSL 154
AR L+ G+ +H + +GL + L+ Y +C ++ A
Sbjct: 38 ARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNA---------------- 81
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
R++FD+I + +I W + C + EEAL F +M EG+
Sbjct: 82 ----------------RKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLR 125
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
P++ V+ S+L AC LS+ + G +H IL+N+ DA++ +ALI MYSKCG +E+A
Sbjct: 126 PNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRV 185
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F KD+V M+ G A +G +EAL + +M++ G+KPN ++ +++A G
Sbjct: 186 FDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDK 245
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE---DKFISYKA 391
+ ++FR M V+P + + ++ + ++ + K M + ++ +
Sbjct: 246 SMVSEVFRLMTA-NGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISS 304
Query: 392 LLSACITYSEFDLGKKVANNMMKLGNQSHEAYV--LLSNFYALEGHWTEV 439
LL AC + GK++ M +G + + YV L + YA G+ +E
Sbjct: 305 LLPACTNVANLRHGKEIHGYAMVIGVEK-DVYVRSALVDMYAKCGYISEA 353
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/421 (38%), Positives = 247/421 (58%), Gaps = 15/421 (3%)
Query: 46 FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGK 104
F +W+T +S +N+ QL+ D+ T + ACA L ++ G+
Sbjct: 100 FSQHNAWHTTISYFNN------------QLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQ 147
Query: 105 TVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM 164
VHC+ TK G E L + N+L+ +Y K A +LFDEM R++VS N LI+GY
Sbjct: 148 KVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEM-VVRDVVSWNTLISGYCFS 206
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSV 223
+VD AR VFD +++K++V W +M+ G + ++ +A+ELF++M EG + P++ +VSV
Sbjct: 207 GMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSV 266
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
LSAC+ L L G+ +HRFI +N I F+ AL DMY+KCG + EA F++ +DV
Sbjct: 267 LSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDV 326
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
++W+ +I GLA YG NEA F +M G++PN+ +F+ +L AC H+GL+ +G + F
Sbjct: 327 ISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDM 386
Query: 344 MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
M VY + P IEH+ C+VDLLSRAG L QAE I MP + I + ALL C Y + +
Sbjct: 387 MPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAE 446
Query: 404 LGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
G++V +++L + + V L+N YA G + A R M++ ++ K PG S I++
Sbjct: 447 RGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEIN 506
Query: 464 H 464
+
Sbjct: 507 N 507
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 147/342 (42%), Gaps = 66/342 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ +H VTK +S+++V NSL+ Y ++ A+ LFD+M RDV SWNTL+S Y
Sbjct: 146 GQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCF 205
Query: 60 -----------------NDFSDS------------GEVLILFKQLIFE-GIVADKITLVI 89
N S S + + LF+Q+ E G+ + +TLV
Sbjct: 206 SGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVS 265
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA L L GK +H + + +E L + NAL MYAKC + EA +F EM R
Sbjct: 266 VLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHER- 324
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D++ W ++ G EA F +MI
Sbjct: 325 -------------------------------DVISWSIIIMGLAMYGYANEAFNFFAEMI 353
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NNITQDAFVKTALIDMYSKCGSL 268
++G+ P++ + +L+AC+ + G + Q IT ++D+ S+ G L
Sbjct: 354 EDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRL 413
Query: 269 EEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQM 309
++A + +V+ W ++ G Y RV +++
Sbjct: 414 DQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRI 455
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 80/169 (47%), Gaps = 4/169 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + + ++ +++GN+L Y + +A+ +F +M RDV SW+ ++
Sbjct: 278 LGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLA 337
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
+ + E F ++I +G+ + I+ + L +AC + G +V G+ +
Sbjct: 338 MYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKI 397
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDME 165
++ + ++ +D+A L + M + N++ L+ G Y D E
Sbjct: 398 EHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAE 446
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 165/435 (37%), Positives = 238/435 (54%), Gaps = 4/435 (0%)
Query: 28 YGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87
+GR A DA LFD++P D+ S+ +LMS++ + + +F I G D
Sbjct: 66 FGRPA---DAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAA 122
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
V SA L G VH + GL+ L + NAL+ MY +C + + A +FD M
Sbjct: 123 VGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRM-L 181
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
++ V+ ++ GY+ VD A F ++ K V W +++ G V+ KQP +ALELF K
Sbjct: 182 VKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGK 241
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M+ EG P+ +V VLSAC+ + L GR +H + ++N T + V AL+DMY+K GS
Sbjct: 242 MLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGS 301
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+ A F + KD TWTTMI G G +A+ +F+ M R GI PN TFVSVL+A
Sbjct: 302 IASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSA 361
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C H+GLI EG +LF +M VY + P +EH+ C+VDLL R GLL +AE I M E +
Sbjct: 362 CSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIV 421
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
+++LLSAC+ + L + ++K YVLL N YAL W E + R+ M
Sbjct: 422 IWRSLLSACLAHGNDRLAEIAGKEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQML 481
Query: 448 ELQTRKKPGNSIIDL 462
+ KKPG S I++
Sbjct: 482 SRKIYKKPGCSWIEV 496
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 134/330 (40%), Gaps = 65/330 (19%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDK----------------- 43
+G +H + + LDS++ V N+L+ Y R F AR +FD+
Sbjct: 137 IGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYM 196
Query: 44 --------------MPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
MP + SW L++ + + L LF +++ EG + IT+V
Sbjct: 197 KCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVG 256
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA + L G+ +H Y +K + + NAL+ MYAK + A
Sbjct: 257 VLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAF---------- 306
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
VF+E+ KD W +M+ +A+ELF M+
Sbjct: 307 ----------------------SVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDML 344
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
G+ P+ VSVLSACS +Q GR L + +I ++D+ + G L
Sbjct: 345 RSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLL 404
Query: 269 EEALVTFYKTDCK-DVVTWTTMIEGLANYG 297
EEA D + D+V W +++ +G
Sbjct: 405 EEAEALIDHMDVEPDIVIWRSLLSACLAHG 434
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 259/531 (48%), Gaps = 69/531 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + K + D+ V N L+ Y + D R +FDKM RD SWNT++ Y+
Sbjct: 235 GDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQ 294
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + LF +++ + D +T+ + AC L L +GK VH Y G E
Sbjct: 295 VGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTA 353
Query: 122 ENALLLMYAKCKEM-------------------------------DEALRLFD------- 143
N L+ MYAKC + DEA++LF
Sbjct: 354 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVK 413
Query: 144 ------------------------------EMGSRRNIVSLNILINGYIDMELVDLAREV 173
+MG NIV N L++ Y + + +V
Sbjct: 414 PDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKV 473
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
F+ + +DI+ W +++ CV ++ L + +M EGVTPD M+S+L CS L+
Sbjct: 474 FENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAK 533
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
+ G+ +H I + + D V LI+MYSKCGSL + F KDVVTWT +I
Sbjct: 534 RQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISAC 593
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
YG G +A+R F +ME GI P+ FV+++ AC HSGL+ EG F RM Y+++P
Sbjct: 594 GMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPR 653
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
IEH+ C+VDLLSR+ LL +AE+FI MP + + ALLSAC + ++ ++V+ ++
Sbjct: 654 IEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERII 713
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+L YVL+SN YA G W +V R+++K +K PG S +++++
Sbjct: 714 ELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQN 764
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 206/419 (49%), Gaps = 42/419 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
M K +H V SD+Y+GN+LI Y R AR +F++MP RDV SWN+L+S YN
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L ++ + G+V D T+ + AC L + G +H K+G++ +
Sbjct: 193 ANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVI 252
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N LL MY K + + R+FD+M R+ VS N +I GY + L
Sbjct: 253 VNNGLLSMYCKFNGLIDGRRIFDKM-VLRDAVSWNTMICGYSQVGLY------------- 298
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
EE+++LF +M+++ PD + S+L AC L +L++G+ VH
Sbjct: 299 ------------------EESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVH 339
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + D LI+MY+KCG+L + F CKD V+W +MI G +
Sbjct: 340 DYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFD 399
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL---FRRMGGVYRVQPTIEHF 357
EA+++F +M + +KP+ T+V +L+ G + G +L +MG I
Sbjct: 400 EAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMG----FNSNIVVS 454
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
LVD+ ++ G + + + + M A D I++ ++++C+ + +LG ++ + M G
Sbjct: 455 NTLVDMYAKCGEMGDSLKVFENMKARD-IITWNTIIASCVHSEDCNLGLRMISRMRTEG 512
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 112/424 (26%), Positives = 184/424 (43%), Gaps = 38/424 (8%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD-KMPFRDVGSWNTLMSIYNDFS 63
LH+ + L + LI Y T + +F P +V WN+++
Sbjct: 35 LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNG 94
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
E L L+ + + D T + +ACA L K++H +G L + N
Sbjct: 95 LFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGN 154
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ MY + ++D+A ++F+EM R++VS N LI+GY
Sbjct: 155 ALIDMYCRFNDLDKARKVFEEM-PLRDVVSWNSLISGY------------------NANG 195
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W EALE++ + + GV PD M SVL AC L +++ G ++H I
Sbjct: 196 YW-------------NEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLI 242
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ I +D V L+ MY K L + F K +D V+W TMI G + GL E++
Sbjct: 243 EKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESI 302
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM-GGVYRVQPTIEHFVCLVD 362
++F +M + KP+ T S+L AC H G + G + M Y T + L++
Sbjct: 303 KLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNI--LIN 359
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
+ ++ G L ++E M +D +S+ ++++ I FD K+ M
Sbjct: 360 MYAKCGNLLASQEVFSGMKCKDS-VSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVT 418
Query: 423 YVLL 426
YV+L
Sbjct: 419 YVML 422
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 122/272 (44%), Gaps = 33/272 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH + K +S+I V N+L+ Y + D+ +F+ M RD+ +WNT+++
Sbjct: 434 LGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCV 493
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D L + ++ EG+ D T++ + C+ L GK +H K+GLE +
Sbjct: 494 HSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVP 553
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N L+ MY+KC GS RN + +VF + K
Sbjct: 554 VGNVLIEMYSKC-------------GSLRN-------------------SFQVFKLMKTK 581
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLV 239
D+V W +++ C + ++A+ F +M G+ PD V+++ ACS ++ G
Sbjct: 582 DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYF 641
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
HR I ++D+ S+ L++A
Sbjct: 642 HRMKKDYKIEPRIEHYACVVDLLSRSALLDKA 673
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/490 (32%), Positives = 266/490 (54%), Gaps = 31/490 (6%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
++A + KT + D Y+ N I A + + +M +V +N ++ +
Sbjct: 1 MYAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQ 60
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ L L+ Q++ + T L AC + +L + + VH + + G + + ++ +
Sbjct: 61 PVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTS 120
Query: 125 LLLMYAKCKEMDEALRLFDEMGSR------------------------------RNIVSL 154
L+ Y+ ++E++R+FDEM R RN+ +
Sbjct: 121 LVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATW 180
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
N LI+GY + VD+A +F+++ +DI+ W +M++ + K+ EAL +F +M G++
Sbjct: 181 NTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGIS 240
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
PDE M +V+SAC+ L L G+ +H +I+Q+ D ++ +ALIDMY+KCGSL+ +L+
Sbjct: 241 PDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLM 300
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F+K K++ W ++IEGLA +G EAL +F +MER+ IKPN TFVSVL+AC H+GLI
Sbjct: 301 FFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLI 360
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
EG + F M + + P +EH+ C+VDLLS+AGLL +A + I+ M E + + ALLS
Sbjct: 361 EEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLS 420
Query: 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK 454
C + ++ + AN +M L + Y LL N A W E A+ R MKE K+
Sbjct: 421 GCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKR 480
Query: 455 -PGNSIIDLK 463
PG+S I+++
Sbjct: 481 CPGSSWIEME 490
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 147/360 (40%), Gaps = 106/360 (29%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS---I 58
+ +H HV + DS ++V SL+ FY M ++ +FD+MP RDV +W T++S
Sbjct: 99 AEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVR 158
Query: 59 YNDFSDSGEVL----------------------------ILFKQL--------------- 75
D S +G + +LF Q+
Sbjct: 159 VGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCY 218
Query: 76 -----------IF-----EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+F GI D++T+ + SACA L L GK +H Y + G +
Sbjct: 219 SQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDV 278
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ +AL+ MYAKC +D +L +F ++ RE
Sbjct: 279 YIGSALIDMYAKCGSLDRSLLMFFKL-------------------------RE------- 306
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K++ W S++ G EEAL +F KM E + P+ VSVLSAC+ ++ GR
Sbjct: 307 KNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGR-- 364
Query: 240 HRFILQNNITQDAFVKTA------LIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEG 292
RF ++T+D + ++D+ SK G LEEAL + + V W ++ G
Sbjct: 365 KRFA---SMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSG 421
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H ++ + + D+Y+G++LI Y + + ++F K+ +++ WN+++
Sbjct: 261 LGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLA 320
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-----VGL 115
+ E L +F ++ E I + +T V + SAC + G+ T+ G+
Sbjct: 321 VHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGV 380
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
E+ M + L +K ++EAL+L M N V L++G
Sbjct: 381 EHYGCMVDLL----SKAGLLEEALQLIRTMKLEPNAVIWGALLSG 421
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/467 (34%), Positives = 266/467 (56%), Gaps = 9/467 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF--YGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K HA V T LD++ + + L+ F + T A +F+++ + NT++ +
Sbjct: 22 KQAHAQVFTTGLDTNTFALSRLLAFCSHPYQGSLTYACRVFERIHHPTLCICNTIIKTFL 81
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ +F +++ G+ D T+ + ACA L GK VH Y++K+GL + +
Sbjct: 82 VNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLGLVFDIF 141
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ MY+ C ++ A +FDEM R + VS +++I+GY + VD AR FDE +K
Sbjct: 142 VGNSLMAMYSVCGDVIAARHVFDEM-PRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEK 200
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D +W +M+ G V+ +E L LF+ + V PDE + VS+LSAC+ L L G +H
Sbjct: 201 DRGIWGAMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIH 260
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
R++ + ++ + T+L+DMY+KCG+LE A F +D+V W MI GLA +G G
Sbjct: 261 RYLNRKTVSLSIRLSTSLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGA 320
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL++F +ME+ GIKP++ TF++V AC +SG+ EG QL +M +Y ++P EH+ CL
Sbjct: 321 SALKMFSEMEKTGIKPDDITFIAVFTACSYSGMAHEGLQLLDKMSSLYEIEPKSEHYGCL 380
Query: 361 VDLLSRAGLLYQAEEFIKIMPA-----EDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
VDLLSRAGL +A I+ + + ++ ++++A LSAC + + L ++ A +++L
Sbjct: 381 VDLLSRAGLFGEAMVMIRRITSTSWNGSEETLAWRAFLSACCNHGQAQLAERAAKRLLRL 440
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
N S YVLLSN YA G ++ R M+ K PG S +++
Sbjct: 441 ENHS-GVYVLLSNLYAASGKHSDARRVRNMMRNKGVDKAPGCSSVEI 486
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 139/349 (39%), Gaps = 70/349 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSL-------------------------------IHFYG 29
+GK +H + +K L DI+VGNSL I Y
Sbjct: 123 LGKMVHGYSSKLGLVFDIFVGNSLMAMYSVCGDVIAARHVFDEMPRLSAVSWSVMISGYA 182
Query: 30 RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
++ AR+ FD+ P +D G W ++S Y S E L LF+ L +V D+ V
Sbjct: 183 KVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVS 242
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA L L G +H Y + + + + +LL MYAKC ++ A RLFD M R
Sbjct: 243 ILSACAHLGALDIGIWIHRYLNRKTVSLSIRLSTSLLDMYAKCGNLELAKRLFDSMPER- 301
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
DIV W +M+ G AL++F +M
Sbjct: 302 -------------------------------DIVCWNAMISGLAMHGDGASALKMFSEME 330
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
G+ PD+ ++V +ACS G +L+ + I + L+D+ S+ G
Sbjct: 331 KTGIKPDDITFIAVFTACSYSGMAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLLSRAGLF 390
Query: 269 EEALVTFYK------TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
EA+V + ++ + W + N+G A R ++ R
Sbjct: 391 GEAMVMIRRITSTSWNGSEETLAWRAFLSACCNHGQAQLAERAAKRLLR 439
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 164/458 (35%), Positives = 258/458 (56%), Gaps = 1/458 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H K + S ++V N+LI Y L AR LFD + + + SWN+++ Y +
Sbjct: 110 VHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGN 169
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E +LF+++ G+ D T V L S C++ L G+ VH G++ + + NA
Sbjct: 170 WKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNA 229
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MYAKC + A +FD +N+VS +I+ Y +++AR++FD++ K++V
Sbjct: 230 LVDMYAKCGNLHSAQAIFDRT-QEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVS 288
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W SM+ ++ Q EAL+LF KM + V PDE +VS+L+ACS L +L G+ +H +IL
Sbjct: 289 WNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYIL 348
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
N + +LIDMY+KCG + AL F + K++V+W +I LA +G G EA++
Sbjct: 349 SNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIK 408
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+F +M+ G P+E T +L+AC HSGL+ G F RMG +YRV IEH+ C+VDLL
Sbjct: 409 LFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLL 468
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
R GLL +A E I MP + + + ALL AC + ++GK++ +++L S YV
Sbjct: 469 GRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYV 528
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
L+SN Y W +V + R+ M + +K S I++
Sbjct: 529 LISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEI 566
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 195/429 (45%), Gaps = 73/429 (17%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG--RMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K LHA + L ++ LI F A+ +FD++P + +N+L+ Y+
Sbjct: 5 KLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYS 64
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ D + ++LF+++I G+ ++ TL + AC VH A K+G+ ++
Sbjct: 65 NSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVF 124
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++NAL+ +Y C + A +LFD++ + + +VS N +I GY M
Sbjct: 125 VQNALIAVYVVCGLIHCARKLFDDI-TDKTLVSWNSMIGGYAHMG--------------- 168
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
W+ EA LF+KM + G+ PD V++LS CS +L GR VH
Sbjct: 169 ---NWK-------------EAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVH 212
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY---- 296
I + D V+ AL+DMY+KCG+L A F +T K+VV+WT+MI A +
Sbjct: 213 FCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIE 272
Query: 297 ---------------------------GLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
G EAL +F +M + P+EAT VS+LAAC
Sbjct: 273 VARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACS 332
Query: 330 HSGLITEGCQLFRRM---GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
G + G ++ + G Y V + L+D+ ++ G + A + MP ++
Sbjct: 333 QLGDLVMGKKIHNYILSNKGAYGVTL----YNSLIDMYAKCGPVVTALDIFLEMPGKN-L 387
Query: 387 ISYKALLSA 395
+S+ ++ A
Sbjct: 388 VSWNVIIGA 396
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 137/280 (48%), Gaps = 9/280 (3%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A+ +FD+I + ++ S++ G + P +A+ LF++MI G++P+E + VL AC
Sbjct: 41 AQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGC 100
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
S LVH ++ I FV+ ALI +Y CG + A F K +V+W +M
Sbjct: 101 KSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSM 160
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG--CQLFRRMGGV 347
I G A+ G EA +F +M G++P+ TFV++L+ C S + G + GV
Sbjct: 161 IGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGV 220
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
++ + + LVD+ ++ G L+ A+ E +S+ +++SA + ++ ++
Sbjct: 221 -KIDIIVRN--ALVDMYAKCGNLHSAQAIFD-RTQEKNVVSWTSMISAYAQHGSIEVARQ 276
Query: 408 VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
+ + M S + + + Y EG + E + M+
Sbjct: 277 IFDQMPGKNVVSWNSMI---SCYLREGQYREALDLFNKMR 313
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 161/390 (41%), Gaps = 111/390 (28%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + T + DI V N+L+ Y + A+ +FD+ ++V SW +++S Y
Sbjct: 207 LGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYA 266
Query: 61 DFSD-------------------------------SGEVLILFKQLIFEGIVADKITLVI 89
E L LF ++ +V D+ TLV
Sbjct: 267 QHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVS 326
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +AC++L L GK +H Y Y + + N+L+ MYAKC + AL +F EM +
Sbjct: 327 ILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPG-K 385
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N+VS N++I +HGC EA++LF++M
Sbjct: 386 NLVSWNVIIGAL--------------------------ALHGC-----GLEAIKLFEEMQ 414
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM----YSKC 265
+G PDE + +LSACS + L+DM + +
Sbjct: 415 ADGTLPDEITLTGLLSACS--------------------------HSGLVDMGLYYFDRM 448
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G Y+ +++ + M++ L GL EA+ + +M +KP+ + ++L
Sbjct: 449 G-------VIYRVP-REIEHYACMVDLLGRGGLLGEAIELIGRMP---MKPDVVVWGALL 497
Query: 326 AACRHSGLITEGCQLFRRM-------GGVY 348
ACR G + G Q+ +++ GG+Y
Sbjct: 498 GACRIHGNVEIGKQILKQLLELEPHSGGLY 527
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/460 (32%), Positives = 263/460 (57%), Gaps = 1/460 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H + ALD D + I + L + A +F D+ +NT + + S
Sbjct: 43 IHGFMLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSS 102
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ L+ ++ +G+ D ++ + A +L + G+ +H L+ +N+ +
Sbjct: 103 PINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATS 162
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MY+ C + +A +LFD +G + ++ N ++ GY+ + + AR+VF+E+ ++++
Sbjct: 163 LIQMYSSCGFVSDARKLFDFVGFK-DVALWNAMVAGYVKVGELKSARKVFNEMPQRNVIS 221
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +++ G + +P EA+ELF+KM E V PDE M++VLSAC+ L L+ G +H +I
Sbjct: 222 WTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIE 281
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
++ + + + ALIDMY+K G++ AL F K V+TW+T+I LA +GLG EA+
Sbjct: 282 KHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAID 341
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+F +ME+ ++PNE TFV++L+AC H G++ G F +M +Y+++P IEH+ C++DLL
Sbjct: 342 MFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLL 401
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
+RAG L +A++ + MP E + + +LL+A T+ + +L + ++ KL + YV
Sbjct: 402 ARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKHLAKLEPGNSGNYV 461
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
LLSN YA G W E R+ M+ +K PG S+I++ +
Sbjct: 462 LLSNTYAALGKWNESGTVRKLMRNAGVKKAPGGSVIEINN 501
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 132/307 (42%), Gaps = 72/307 (23%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWN------- 53
+G+ +H +ALD D+ V SLI Y +DAR LFD + F+DV WN
Sbjct: 140 VGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYV 199
Query: 54 ------------------------TLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
TL++ Y + E + LF+++ E + D+I ++
Sbjct: 200 KVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLA 259
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA L L G+ +H Y K GL ++++ NAL+ MYAK + AL
Sbjct: 260 VLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRAL---------- 309
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
EVF+ + K ++ W +++ EA+++F +M
Sbjct: 310 ----------------------EVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRME 347
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQNNITQDAFVKTALIDMYSK 264
V P+E V++LSACS + + GR + + ++ I +ID+ ++
Sbjct: 348 KAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYG----CMIDLLAR 403
Query: 265 CGSLEEA 271
G L+EA
Sbjct: 404 AGYLQEA 410
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 249/456 (54%), Gaps = 1/456 (0%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
H V K ++VGN+L+H Y D+R FD+M R+V SWN++++ Y ++
Sbjct: 133 HGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNT 192
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
E LF+ + +G++AD+ TLV L AC+ L +GK VH + G L + NAL
Sbjct: 193 REACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANAL 252
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+ MY KC ++ A FD M +N VS ++ +D AR+ F++I +K I+ W
Sbjct: 253 VDMYGKCGDLLMAHTCFDMM-PFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISW 311
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+M+ V+ + EAL+L+ +M G+ PDE + +VLSAC L +L G+++H I
Sbjct: 312 NAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRD 371
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
N + +L+DMY++CG ++ A+ F + K+V++W +I LA +G +AL
Sbjct: 372 NFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMF 431
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F M P+E TFV++L+AC H GL+ G F+ M VY V+P +EH+ C+VDLL
Sbjct: 432 FRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLG 491
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
R G L +A + IK MP + + ALL AC + +GK+V +++L S +VL
Sbjct: 492 RGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVL 551
Query: 426 LSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+SN W ++ R+ M+E +K G S I+
Sbjct: 552 ISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIE 587
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/390 (29%), Positives = 178/390 (45%), Gaps = 65/390 (16%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR LFD++P D +N+L+ Y + E L L + +I GI+ ++ TL L ACAR
Sbjct: 63 ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
++ + H K+G + + NALL YA + ++ R FDEM RN+VS N
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEM-VDRNVVSWNS 181
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
+INGY +A EA LF+ M +G+ D
Sbjct: 182 MINGY-------------------------------AQAGNTREACSLFEGMRRQGLLAD 210
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
E +VS+L ACS+ NL++G+LVH +L D + AL+DMY KCG L A F
Sbjct: 211 EFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFD 270
Query: 277 KTDCKDVVTWTTMIEGLANY-------------------------------GLGNEALRV 305
K+ V+WT+M+ LA G +EAL +
Sbjct: 271 MMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDL 330
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
+ +M+ G+ P+E T +VL+AC G + G + + + P + F L+D+ +
Sbjct: 331 YNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFH-NPGVALFNSLLDMYA 389
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
R G + A MP+++ IS+ A++ A
Sbjct: 390 RCGQVDTAISLFSEMPSKN-VISWNAIIGA 418
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 24/248 (9%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
AR++FD I D D ++ S++ + P+EAL L + MI G+ P+E + +L AC+
Sbjct: 63 ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+ ++ + H +++ FV AL+ Y+ GSL ++ F + ++VV+W +M
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 182
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR-----------HSGLITEGC 338
I G A G EA +F M R+G+ +E T VS+L AC HS L+ GC
Sbjct: 183 INGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGC 242
Query: 339 QLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT 398
R+ + + LVD+ + G L A +MP ++ +S+ ++L A
Sbjct: 243 ----------RIDLILAN--ALVDMYGKCGDLLMAHTCFDMMPFKNA-VSWTSMLCALAK 289
Query: 399 YSEFDLGK 406
+ D +
Sbjct: 290 RASIDAAR 297
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 144/345 (41%), Gaps = 68/345 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRD------------- 48
GK +H+H+ D+ + N+L+ YG+ A FD MPF++
Sbjct: 230 GKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAK 289
Query: 49 ------------------VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+ SWN ++S Y E L L+ ++ G+ D+ TL +
Sbjct: 290 RASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAV 349
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SAC +L L GK +H + + N+LL MYA+C ++D A+ LF EM S +N
Sbjct: 350 LSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPS-KN 408
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
++S N +I MHG + ++AL F+ M+
Sbjct: 409 VISWNAIIGALA--------------------------MHG-----RAQDALMFFRSMVF 437
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NNITQDAFVKTALIDMYSKCGSLE 269
+ PDE V++LSAC+ L+ G+ + + N+ ++D+ + G L
Sbjct: 438 DAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLA 497
Query: 270 EALVTFYKTDCK-DVVTWTTMIEGLANYG---LGNEALRVFYQME 310
+A+ + DVV W ++ +G +G + ++ ++E
Sbjct: 498 KAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELE 542
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 168/462 (36%), Positives = 240/462 (51%), Gaps = 32/462 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H +T++ L D+ +GN+LI+ Y R DAR +F + RDV SW ++
Sbjct: 550 LGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCA 609
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D + + + LF Q+ EG K T + C L GK V Y G E
Sbjct: 610 DQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTG 669
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ Y+K M +A REVFD++ +
Sbjct: 670 VGNALISAYSKSGSMTDA--------------------------------REVFDKMPSR 697
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIV W ++ G + + A+E +M ++ V P++ VS+L+ACSS S L+ G+ VH
Sbjct: 698 DIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVH 757
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I++ + D V ALI MY+KCGS EA F K+VVTW MI A +GL +
Sbjct: 758 AEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLAS 817
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL F ME++GIKP+ +TF S+L+AC H+GL+ EG Q+F M Y V PTIEH+ CL
Sbjct: 818 KALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCL 877
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
V LL RA +AE I MP ++ LL AC + L + ANN +KL ++
Sbjct: 878 VGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNP 937
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+LLSN YA G W +VA+ RR M+ RK+PG S I++
Sbjct: 938 AVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEV 979
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 138/465 (29%), Positives = 233/465 (50%), Gaps = 54/465 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+H+++ SD+ +GN+LI Y R AR LF MP RD+ SWN +++ Y
Sbjct: 349 GKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYAR 408
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D GE + L+KQ+ EG+ ++T + L SACA GK +H + G++ ++
Sbjct: 409 REDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHL 468
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY +C + EA +F E R+++S N +I G+
Sbjct: 469 ANALMNMYRRCGSLMEAQNVF-EGTQARDVISWNSMIAGH-------------------- 507
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
HG E A +LF++M +E + PD SVLS C + L+ G+ +H
Sbjct: 508 ------AQHGSY-----ETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHG 556
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I ++ + D + ALI+MY +CGSL++A F+ +DV++WT MI G A+ G +
Sbjct: 557 RITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMK 616
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR-MGGVYRVQPTIEHFVCL 360
A+ +F+QM+ +G +P ++TF S+L C S + EG ++ + Y + + + L
Sbjct: 617 AIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN--AL 674
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ-- 418
+ S++G + A E MP+ D +S+ +++ Y++ LG+ ++ Q
Sbjct: 675 ISAYSKSGSMTDAREVFDKMPSRD-IVSWNKIIAG---YAQNGLGQTAVEFAYQMQEQDV 730
Query: 419 --SHEAYVLL----SNFYALEGHWTEVAEARRNMKELQTRKKPGN 457
+ ++V L S+F ALE E +R E+ RK G+
Sbjct: 731 VPNKFSFVSLLNACSSFSALE-------EGKRVHAEIVKRKLQGD 768
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 112/414 (27%), Positives = 196/414 (47%), Gaps = 40/414 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+ + K D V NSL+ YG+ AR +F + RDV S+NT++ +Y
Sbjct: 147 GKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQ 206
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L LF Q+ EGI DK+T + L A L GK +H + GL + +
Sbjct: 207 KAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRV 266
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ M +C + VD A++ F D+D
Sbjct: 267 GTALVTMCVRCGD--------------------------------VDSAKQAFKGTADRD 294
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V++ +++ + EA E + +M +GV + +S+L+ACS+ L+ G+L+H
Sbjct: 295 VVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHS 354
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I ++ + D + ALI MY++CG L +A FY +D+++W +I G A E
Sbjct: 355 HISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGE 414
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMGGVYRVQPTIEHFV 358
A+R++ QM+ +G+KP TF+ +L+AC +S +G + R G ++
Sbjct: 415 AMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSG----IKSNGHLAN 470
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
L+++ R G L +A+ + A D IS+ ++++ + ++ K+ M
Sbjct: 471 ALMNMYRRCGSLMEAQNVFEGTQARD-VISWNSMIAGHAQHGSYETAYKLFQEM 523
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 190/393 (48%), Gaps = 34/393 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HA + + + DI++ N LI+ Y + DA +F +MP RDV SWN+L+S Y
Sbjct: 47 KRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQ 106
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ LF+++ G + +KIT + + +AC +L GK +H K G + ++
Sbjct: 107 GFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQ 166
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N+LL MY KC ++ A ++F + S R++VS N ++ Y V
Sbjct: 167 NSLLSMYGKCGDLPRARQVFAGI-SPRDVVSYNTMLGLYAQKAYV--------------- 210
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
+E L LF +M EG++PD+ +++L A ++ S L G+ +H+
Sbjct: 211 ----------------KECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKL 254
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
++ + D V TAL+ M +CG ++ A F T +DVV + +I LA +G EA
Sbjct: 255 TVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEA 314
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
+Y+M G+ N T++S+L AC S + G +L ++ L+
Sbjct: 315 FEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALIS 373
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ +R G L +A E MP D IS+ A+++
Sbjct: 374 MYARCGDLPKARELFYTMPKRD-LISWNAIIAG 405
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 150/313 (47%), Gaps = 34/313 (10%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
++ T V L C R L K +H + + + + N L+ MY KC+ + +A ++F
Sbjct: 26 ERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVF 85
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
EM RR+++S N LI+ Y A++ F ++A
Sbjct: 86 KEM-PRRDVISWNSLISCY--------AQQGFK-----------------------KKAF 113
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
+LF++M + G P++ +S+L+AC S + L+ G+ +H I++ +D V+ +L+ MY
Sbjct: 114 QLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMY 173
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
KCG L A F +DVV++ TM+ A E L +F QM +GI P++ T++
Sbjct: 174 GKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYI 233
Query: 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382
++L A ++ EG + ++ + I LV + R G + A++ K A
Sbjct: 234 NLLDAFTTPSMLDEG-KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFK-GTA 291
Query: 383 EDKFISYKALLSA 395
+ + Y AL++A
Sbjct: 292 DRDVVVYNALIAA 304
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/464 (34%), Positives = 240/464 (51%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H K + D +V +LI Y + +A +LF D+ SWN +M +
Sbjct: 417 VGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFT 476
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L LF + G AD+IT A L +L GK +H K+ Y L
Sbjct: 477 VSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLF 536
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ + +L MY KC EM A R+VF++I
Sbjct: 537 VISGILDMYLKCGEMKSA--------------------------------RKVFNQIPSP 564
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V W +++ GCV+ + E+AL + +M GV PDE +++ ACS L+ L+ G+ +H
Sbjct: 565 DDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIH 624
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I++ N D FV T+L+DMY+KCG++E+A F + + + V W MI GLA +G
Sbjct: 625 ANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAE 684
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL F +M+ +G+ P+ TF+ VL+AC HSGL ++ + F M Y V+P IEH+ CL
Sbjct: 685 EALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCL 744
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD LSRAG + +AE+ + MP E Y+ LL+AC + + G++VA + +
Sbjct: 745 VDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDS 804
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
AYVLLSN YA W AR MK + +K+PG S ID+K+
Sbjct: 805 AAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKN 848
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 130/464 (28%), Positives = 215/464 (46%), Gaps = 49/464 (10%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ L + K L D++V +L++ Y + +ARVLFD+MP RDV WN +M Y +
Sbjct: 142 EALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEM 201
Query: 63 SDSGEVLILFKQLIFEGIVADKITL-VILFSACARLEKLHYGKTVHCYATKVGL---EYM 118
EVL LF G+ D +++ IL + + V YATK+ + +
Sbjct: 202 GAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSD 261
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRN-------------IVSLNIL-------- 157
+ + N L Y + E EA+ F +M R + SLN L
Sbjct: 262 VTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHG 321
Query: 158 -----------------INGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
IN Y+ V+ AR +F ++ + D++ W +++ GC ++ E
Sbjct: 322 AVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEEC 381
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLS-NLQYGRLVHRFILQNNITQDAFVKTALI 259
+L LF ++ G+ PD+ + SVL ACSSL + GR VH L+ I D+FV TALI
Sbjct: 382 SLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALI 441
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
D+YSK G +EEA + F+ D D+ +W M+ G EALR+F M +G K ++
Sbjct: 442 DVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQI 501
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFI 377
TF + A + +G + Q + V +++ + FV ++D+ + G + A +
Sbjct: 502 TFAN---AAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVF 558
Query: 378 KIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
+P+ D +++ ++S C+ E + + M G Q E
Sbjct: 559 NQIPSPDD-VAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDE 601
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 115/427 (26%), Positives = 200/427 (46%), Gaps = 56/427 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSI 58
+GK HA + + L+ D YV N+LI Y + AR LFD P RD+ ++N +++
Sbjct: 31 LGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAA 90
Query: 59 Y------NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK 112
Y +D + E +F+ L ++ + TL LF C + + YA K
Sbjct: 91 YAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVK 150
Query: 113 VGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM----ELVD 168
+GL++ + + AL+ +YAK + + EA LFD M R++V N+++ Y++M E++
Sbjct: 151 IGLQWDVFVAGALVNIYAKFQRIREARVLFDRM-PVRDVVLWNVMMKAYVEMGAGDEVLG 209
Query: 169 L------------------------AREVFDEIV---------------DKDIVLWRSMM 189
L + VF+ + D D+ +W +
Sbjct: 210 LFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTL 269
Query: 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249
++A + EA++ F+ MI V D + +LS +SL++L+ G+ +H +++
Sbjct: 270 SSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWD 329
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
Q V + I+MY K GS+ A F + D+++W T+I G A GL +LR+F +
Sbjct: 330 QFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDL 389
Query: 310 ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRA 367
R G+ P++ T SVL AC S L C + + ++ FV L+D+ S+
Sbjct: 390 LRSGLLPDQFTITSVLRAC--SSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKG 447
Query: 368 GLLYQAE 374
G + +AE
Sbjct: 448 GKMEEAE 454
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC- 280
S+L + S+L G+ H I+ + + D +V LI MY+KCGSL A F T
Sbjct: 18 SILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQS 77
Query: 281 -KDVVTWTTMIEGLANYG 297
+D+VT+ ++ A+ G
Sbjct: 78 DRDLVTYNAILAAYAHTG 95
>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Glycine max]
Length = 916
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 168/531 (31%), Positives = 266/531 (50%), Gaps = 71/531 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH+ + K S+++V N+LI Y + +A F+ M +RD SWN ++ Y
Sbjct: 336 VGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYV 395
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
LF+++I +GIV D+++L + SAC ++ L G+ HC + K+GLE L
Sbjct: 396 QEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLF 455
Query: 121 MENALLLMYAKC------------------------------KEMDEALRLFDEM----- 145
++L+ MY+KC K E++ L EM
Sbjct: 456 AGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKNTKESINLLHEMQILGL 515
Query: 146 ---------------GSRRNIVSLNI-------------------LINGYIDMELVDLAR 171
GS + I+ L I L+ Y+D + + A
Sbjct: 516 KPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADAN 575
Query: 172 EVFDEIVD-KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230
+F E K IV+W +++ G ++ + + AL L+++M D ++PD+ V+VL AC+ L
Sbjct: 576 ILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALL 635
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTM 289
S+L GR +H I D +AL+DMY+KCG ++ ++ F + K DV++W +M
Sbjct: 636 SSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSM 695
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I G A G AL+VF +M + I P++ TF+ VL AC H+G + EG Q+F M Y
Sbjct: 696 IVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQIFDVMVNYYG 755
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
++P ++H+ C+VDLL R G L +AEEFI + E + + LL AC + + G++ A
Sbjct: 756 IEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPNAMIWANLLGACRIHGDEKRGQRAA 815
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
+++L QS YVLLSN YA G+W E RR M + +K PG S I
Sbjct: 816 KKLIELEPQSSSPYVLLSNMYAASGNWDEARSLRRTMIKKDIQKIPGCSWI 866
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 105/338 (31%), Positives = 173/338 (51%), Gaps = 37/338 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HAH K +S IYV +SLI+ YG+ + DAR +FD + +++ WN ++ +Y+
Sbjct: 239 VHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGF 298
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
V+ LF +I GI D+ T + S CA E L G+ +H K L + NA
Sbjct: 299 LSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNA 358
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MYAK + EA + F+ M + R+ +S N +I GY+ E+
Sbjct: 359 LIDMYAKAGALKEAGKHFEHM-TYRDHISWNAIIVGYVQEEV------------------ 399
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
A LF++MI +G+ PDE + S+LSAC ++ L+ G+ H +
Sbjct: 400 -------------EAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSV 446
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN--EA 302
+ + + F ++LIDMYSKCG +++A T+ + VV+ +I G Y L N E+
Sbjct: 447 KLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAG---YALKNTKES 503
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
+ + ++M+ G+KP+E TF S++ C+ S + G Q+
Sbjct: 504 INLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQI 541
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 181/375 (48%), Gaps = 36/375 (9%)
Query: 23 SLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGI 80
++++ Y + DA LF +MP R+V +WN ++S + + E L F Q+ G+
Sbjct: 154 TVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGV 213
Query: 81 VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALR 140
+ + TL + SA A L L++G VH +A K G E + + ++L+ MY KC+ D+
Sbjct: 214 KSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDD--- 270
Query: 141 LFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
AR+VFD I K++++W +M+ +
Sbjct: 271 -----------------------------ARQVFDAISQKNMIVWNAMLGVYSQNGFLSN 301
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
+ELF MI G+ PDE S+LS C+ L+ GR +H I++ T + FV ALID
Sbjct: 302 VMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALID 361
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
MY+K G+L+EA F +D ++W +I G + A +F +M GI P+E +
Sbjct: 362 MYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVS 421
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
S+L+AC + ++ G Q F + ++ + L+D+ S+ G + A + M
Sbjct: 422 LASILSACGNIKVLEAG-QQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSM 480
Query: 381 PAEDKFISYKALLSA 395
P E +S AL++
Sbjct: 481 P-ERSVVSVNALIAG 494
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 178/384 (46%), Gaps = 44/384 (11%)
Query: 49 VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHC 108
V WN + +S S VL + + G D+ T + SACA+L+ LH G+ VH
Sbjct: 13 VRQWNWRVQGTKHYS-SERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHS 71
Query: 109 YATKVGLEYMLNMENALLLMYAKCKEMD-------------------------------- 136
K GLE + AL+ +YAKC +
Sbjct: 72 CVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLP 131
Query: 137 -EALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDE--IVDKDIVLWRSMMHG 191
EAL +FD+M + + V+L ++N YI + +D A ++F + I +++V W M+ G
Sbjct: 132 HEALHIFDKMRNSAVPDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISG 191
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
K EEAL F +M GV + SVLSA +SL+ L +G LVH ++
Sbjct: 192 HAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESS 251
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
+V ++LI+MY KC ++A F K+++ W M+ + G + + +F M
Sbjct: 252 IYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMIS 311
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGL 369
GI P+E T+ S+L+ C + G QL + + + T FV L+D+ ++AG
Sbjct: 312 CGIHPDEFTYTSILSTCACFEYLEVGRQLH---SAIIKKRFTSNLFVNNALIDMYAKAGA 368
Query: 370 LYQAEEFIKIMPAEDKFISYKALL 393
L +A + + M D IS+ A++
Sbjct: 369 LKEAGKHFEHMTYRDH-ISWNAII 391
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 166/451 (36%), Positives = 254/451 (56%), Gaps = 12/451 (2%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ ++ +++ Y ++ AR FD MP R V SWN ++S Y + EVL LF +
Sbjct: 191 ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDE 250
Query: 75 LIFEGIVADKITLVILFSACA-RLEKLHYGKTVHCYATKVGLEYMLN--MENALLLMYAK 131
++ GI D+ T V + SAC+ R + V K + LN + ALL MYAK
Sbjct: 251 MVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQK---QIQLNCFVRTALLDMYAK 307
Query: 132 CKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHG 191
C + A R+FDE+G+ RN V+ N +I+ Y + +D ARE+F+ + +++V W SM+ G
Sbjct: 308 CGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAG 367
Query: 192 CVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
+ Q A+ELFK+MI + +TPDE MVSV+SAC L L+ G V RF+ +N I
Sbjct: 368 YAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKL 427
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
A+I MYS+CGS+E+A F + +DVV++ T+I G A +G G EA+ + M+
Sbjct: 428 SISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMK 487
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370
GI+P+ TF+ VL AC H+GL+ EG ++F + P I+H+ C+VDLL R G L
Sbjct: 488 EGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGEL 542
Query: 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430
A+ ++ MP E Y +LL+A + + +LG+ AN + +L + ++LLSN Y
Sbjct: 543 EDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIY 602
Query: 431 ALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
A G W +V R MK+ +K G S ++
Sbjct: 603 ASAGRWKDVERIREAMKKGGVKKTTGWSWVE 633
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 117/459 (25%), Positives = 202/459 (44%), Gaps = 73/459 (15%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRM-ALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
+ LHA + +L Y LI+ R+ A +LF+ +V + +++ Y+
Sbjct: 18 RQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFYSH 77
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D +V+++F+ + G+ D IL + + G H + K+G +
Sbjct: 78 LQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAG-----NGGIGFHAHVLKLGHGSDAFV 132
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGS-RRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
NA++ MYA+ + A ++FDE+ R + N +++GY E A+ +FD + ++
Sbjct: 133 RNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPER 192
Query: 181 DIVLWRSMMHGCVKAKQ-------------------------------PEEALELFKKMI 209
+++ W +M+ G K K EE L LF +M+
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMV 252
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS-- 267
+ G+ PDE V+V+SACSS + + R + Q I + FV+TAL+DMY+KCGS
Sbjct: 253 NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIG 312
Query: 268 ------------------------------LEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
L+ A F ++VVTW +MI G A G
Sbjct: 313 AARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNG 372
Query: 298 LGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
A+ +F +M K + P+E T VSV++AC H G + G + R + +++ +I
Sbjct: 373 QSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTE-NQIKLSISG 431
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
++ + SR G + A+ + M D +SY L+S
Sbjct: 432 HNAMIFMYSRCGSMEDAKRVFQEMATRD-VVSYNTLISG 469
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 105/244 (43%), Gaps = 24/244 (9%)
Query: 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEV 68
+T+ + I N++I Y R DA+ +F +M RDV S+NTL+S + E
Sbjct: 420 LTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEA 479
Query: 69 LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
+ L + GI D++T + + +AC+ L G+ V +++ M + L
Sbjct: 480 INLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMVDLL--- 536
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDL-AREVFDEIVDK--DI 182
+ E+++A R + M + L+N + +EL +L A ++F+ D +
Sbjct: 537 -GRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNF 595
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
+L ++ + K E E KK + + S ++YG +H+F
Sbjct: 596 ILLSNIYASAGRWKDVERIREAMKK--------------GGVKKTTGWSWVEYGGKLHKF 641
Query: 243 ILQN 246
I+ +
Sbjct: 642 IVAD 645
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 260/462 (56%), Gaps = 5/462 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG--RMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K +H+H+ +A D + +I + A + A LF +P R WNT++ I+
Sbjct: 27 KQMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFIWNTIIRIFV 86
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ +++ L L+K ++ G + + T + AC + G H K+G E
Sbjct: 87 EKNENATALSLYKNMLQTGFLPNNYTFSFVLRACT--DNSPVGLASHAQVIKLGWESYDF 144
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N L+ +YA ++ A +LFD + + R++++ LINGY+ V+ ARE+FD++ ++
Sbjct: 145 VLNGLIHLYANWSSVEAARKLFD-VSTCRDVITWTALINGYVKSGHVEFARELFDQMPER 203
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ V W +M+ G V EALELF + G+ P+ +V L+ACS L +L +GR +H
Sbjct: 204 NEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIH 263
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ +N D + TAL+DMY+KCG +E A F K KD +T++I GLAN+G
Sbjct: 264 AYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSA 323
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+A+++F +M+ + + PNE TF+ VL+AC GL+ EG ++F M VY ++P ++H+ C+
Sbjct: 324 DAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCM 383
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A+ ++ MP E ALL++C + + +LGK+ ++++ G
Sbjct: 384 VDLLGRAGLLEEAKRLVREMPMEPDSYVLGALLNSCRVHGDVELGKETVESLVERGLDHG 443
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+VLLSN YA W V + R+ M + +K PG S I++
Sbjct: 444 GVHVLLSNMYASSNQWDWVVKVRKEMGAKKVKKVPGCSSIEI 485
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 124/303 (40%), Gaps = 64/303 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G HA V K +S +V N LIH Y + AR LFD RDV +W L++ Y
Sbjct: 126 VGLASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYV 185
Query: 60 ------------------NDFSDSG------------EVLILFKQLIFEGIVADKITLVI 89
N+ S S E L LF L G+ + +V
Sbjct: 186 KSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVG 245
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+AC+ L L +G+ +H Y + G E + AL+ MYAKC
Sbjct: 246 ALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDMYAKCG---------------- 289
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+++A VF+++ DKD + S++ G Q +A++LF +M
Sbjct: 290 ----------------CIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQ 333
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
E V P+E + VLSACS + + G R+ + + I ++D+ + G L
Sbjct: 334 SEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLL 393
Query: 269 EEA 271
EEA
Sbjct: 394 EEA 396
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 93/182 (51%), Gaps = 1/182 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA+V + + D +G +L+ Y + A +F+KMP +D ++ +L+S +
Sbjct: 259 GRWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLAN 318
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYMLN 120
S + + LF ++ E ++ +++T + + SAC+R+ + G + +C + G+E +
Sbjct: 319 HGQSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQ 378
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++ + + ++EA RL EM + L L+N V+L +E + +V++
Sbjct: 379 HYGCMVDLLGRAGLLEEAKRLVREMPMEPDSYVLGALLNSCRVHGDVELGKETVESLVER 438
Query: 181 DI 182
+
Sbjct: 439 GL 440
>gi|147771209|emb|CAN67545.1| hypothetical protein VITISV_030949 [Vitis vinifera]
Length = 598
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 254/462 (54%), Gaps = 34/462 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH++ KT+LD V N+LIH Y A LF + RD+ SWNT+++ Y
Sbjct: 164 IGNSLHSYCCKTSLDLKNEVRNALIHLYAEFEYMDAAAKLFHETNVRDLVSWNTMIAGYA 223
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+D LF+++ + D+++LV L SAC LH GK VH + G+E M++
Sbjct: 224 KNNDCRNAFSLFREMRIGNVECDRVSLVSLISACTNXRDLHMGKAVHAFIKVSGMEMMIH 283
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
E AL+ MY+KC GS ++L R+VFDE+ D+
Sbjct: 284 FETALINMYSKC-------------GS-------------------IELGRKVFDELADE 311
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+I W SM++G V+ EAL L+ + + PDE M+ ++SAC S +L G ++
Sbjct: 312 NIASWNSMIYGYVECGFNIEALSLWNVIQSRKIKPDEVTMLGLISACRSSGDLHQGIQIN 371
Query: 241 RFI-LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
+I ++++ + ALIDMY+KCGS++ A F K +DV++WT++I G A G G
Sbjct: 372 SYIESSDHLSGSTVLCNALIDMYAKCGSMDRAETVFSKMPRRDVISWTSIIVGYAINGEG 431
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL F +M + I+PN TF+ VL+AC H+GL+ +G L+ M Y ++P IEH C
Sbjct: 432 EEALLAFRKMGAEKIEPNSVTFLGVLSACDHAGLVDKGKNLYDIMCKYYHIEPKIEHCGC 491
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ- 418
+VD+ +RAG+L +A +F+K MP E + ++ L++AC + +F+LG + + ++ + +
Sbjct: 492 MVDMHARAGMLEEAYKFVKDMPVEPNAVVWRMLINACRVHGDFNLGLNLVSGLIDVKTEH 551
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
E +V+ SN +A G W +V + R M + K PG S I
Sbjct: 552 GPEDHVISSNIFAEAGRWDDVLQERSLMVAQKAVKLPGKSSI 593
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 111/397 (27%), Positives = 192/397 (48%), Gaps = 38/397 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRM-ALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +H HV + LD ++ V N+L++ Y A LFDK+P + + + N ++S +
Sbjct: 59 GRSIHCHVLRFGLDYNVNVLNALVYLYSSAEKSMGCACALFDKIPEKTIVTVNCMISGFV 118
Query: 61 DFSDSGEVLILFKQLIFEG----IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
+ LF +++ G + + +TLVIL S C + G ++H Y K L+
Sbjct: 119 KNKRFHAGVGLFNRVLGGGFDLRVKPNYVTLVILISGCVEFGRFSIGNSLHSYCCKTSLD 178
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ NAL+ +YA+ + MD A +LF E R
Sbjct: 179 LKNEVRNALIHLYAEFEYMDAAAKLFHETNVR---------------------------- 210
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
D+V W +M+ G K A LF++M V D +VS++SAC++ +L G
Sbjct: 211 ----DLVSWNTMIAGYAKNNDCRNAFSLFREMRIGNVECDRVSLVSLISACTNXRDLHMG 266
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+ VH FI + + +TALI+MYSKCGS+E F + +++ +W +MI G
Sbjct: 267 KAVHAFIKVSGMEMMIHFETALINMYSKCGSIELGRKVFDELADENIASWNSMIYGYVEC 326
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G EAL ++ ++ + IKP+E T + +++ACR SG + +G Q+ + + +
Sbjct: 327 GFNIEALSLWNVIQSRKIKPDEVTMLGLISACRSSGDLHQGIQINSYIESSDHLSGSTVL 386
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
L+D+ ++ G + +AE MP D IS+ +++
Sbjct: 387 CNALIDMYAKCGSMDRAETVFSKMPRRD-VISWTSII 422
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKC-KEMDEALRL 141
D L AC RL + G+++HC+ + GL+Y +N+ NAL+ +Y+ K M A L
Sbjct: 39 DHFVYASLIKACNRLSAIREGRSIHCHVLRFGLDYNVNVLNALVYLYSSAEKSMGCACAL 98
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
FD++ + IV++N +I+G+ VK K+
Sbjct: 99 FDKI-PEKTIVTVNCMISGF-------------------------------VKNKRFHAG 126
Query: 202 LELFKKMIDEG----VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
+ LF +++ G V P+ +V ++S C G +H + + ++ V+ A
Sbjct: 127 VGLFNRVLGGGFDLRVKPNYVTLVILISGCVEFGRFSIGNSLHSYCCKTSLDLKNEVRNA 186
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LI +Y++ ++ A F++T+ +D+V+W TMI G A A +F +M ++ +
Sbjct: 187 LIHLYAEFEYMDAAAKLFHETNVRDLVSWNTMIAGYAKNNDCRNAFSLFREMRIGNVECD 246
Query: 318 EATFVSVLAAC 328
+ VS+++AC
Sbjct: 247 RVSLVSLISAC 257
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 185 WRSMMHGCVKAKQPEEALELFKKMI----DEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
W +M+ P A+ FK + + D V S++ AC+ LS ++ GR +H
Sbjct: 4 WLTMIRRHASDANPFHAISFFKAIPRNQRENAPLDDHFVYASLIKACNRLSAIREGRSIH 63
Query: 241 RFILQNNITQDAFVKTALIDMYSKC-GSLEEALVTFYKTDCKDVVTWTTMIEGL------ 293
+L+ + + V AL+ +YS S+ A F K K +VT MI G
Sbjct: 64 CHVLRFGLDYNVNVLNALVYLYSSAEKSMGCACALFDKIPEKTIVTVNCMISGFVKNKRF 123
Query: 294 -ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
A GL N L + + +KPN T V +++ C G + G L
Sbjct: 124 HAGVGLFNRVLGGGFDLR---VKPNYVTLVILISGCVEFGRFSIGNSL 168
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/460 (33%), Positives = 254/460 (55%), Gaps = 33/460 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
HAH+ K DSD++V NSLI Y LF +FD +DV SW ++ +
Sbjct: 125 FHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDS 184
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLNMEN 123
S E + F ++ G+ A+++T+V + A + E + +G+++H + + G + + + +
Sbjct: 185 SLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGS 244
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
+L+ MY KC D+A ++VFDE+ +++V
Sbjct: 245 SLVDMYGKCGCYDDA--------------------------------QKVFDEMPSRNVV 272
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W +++ G V+ + E+ + +F++M+ V P+E+ + SVLSAC+ + L GR VH ++
Sbjct: 273 TWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYV 332
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++N+I + V T LID Y+KCG LEEA++ F + K+V TWT MI G A +G A+
Sbjct: 333 IKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAV 392
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
+F+ M + PNE TF+ VL+AC H GL+ EG +LF M + ++P +H+ C+VDL
Sbjct: 393 DLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDL 452
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
R GLL +A+ I+ MP E + AL +C+ + +++LGK A+ ++KL Y
Sbjct: 453 FGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRY 512
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
LL+N Y+ +W +VA R+ MK+ Q K PG S I++K
Sbjct: 513 TLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEVK 552
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 116/252 (46%), Gaps = 14/252 (5%)
Query: 170 AREVFDEIVDKDIVLWRSMM---HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
AR + +I I LW S++ G V + L +++M GV P +L A
Sbjct: 55 ARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRLSFLS-YRQMRRNGVVPSRHTFPPLLKA 113
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
L + + H IL+ D FV+ +LI YS CG E F T+ KDVV+W
Sbjct: 114 VFKLRDANPFQF-HAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSW 172
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
T MI+G EA+ F +M+R G+ NE T VSVL A R + E + R + G
Sbjct: 173 TAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKA----EDVRFGRSIHG 228
Query: 347 VY----RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
Y RV+ + LVD+ + G A++ MP+ + +++ AL++ + F
Sbjct: 229 FYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRN-VVTWTALIAGYVQGRCF 287
Query: 403 DLGKKVANNMMK 414
+ G V M+K
Sbjct: 288 EKGMFVFEEMLK 299
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 54/94 (57%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H +V K +++ + VG +LI FY + +A ++F+++ ++V +W +++ +
Sbjct: 325 GRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAA 384
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
+ + LF ++ + +++T +++ SACA
Sbjct: 385 HGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACA 418
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 165/435 (37%), Positives = 238/435 (54%), Gaps = 4/435 (0%)
Query: 28 YGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87
+GR A DA LFD++P D+ S+ +LMS++ + + +F I G D
Sbjct: 66 FGRPA---DAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAA 122
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
V SA L G VH + GL+ L + NAL+ MY +C + + A +FD M
Sbjct: 123 VGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRM-L 181
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
++ V+ ++ GY+ VD A F ++ K V W +++ G V+ KQP +ALELF K
Sbjct: 182 VKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGK 241
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M+ EG P+ +V VLSAC+ + L GR +H + ++N T + V AL+DMY+K GS
Sbjct: 242 MLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGS 301
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+ A F + KD TWTTMI G G +A+ +F+ M R GI PN TFVSVL+A
Sbjct: 302 IASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSA 361
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C H+GLI EG +LF +M VY + P +EH+ C+VDLL R GLL +AE I M E +
Sbjct: 362 CSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIV 421
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
+++LLSAC+ + L + ++K YVLL N YAL W E + R+ M
Sbjct: 422 IWRSLLSACLAHGNDRLAEIAGMEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQML 481
Query: 448 ELQTRKKPGNSIIDL 462
+ KKPG S I++
Sbjct: 482 SRKIYKKPGCSWIEV 496
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 142/351 (40%), Gaps = 67/351 (19%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDK----------------- 43
+G +H + + LDS++ V N+L+ Y R F AR +FD+
Sbjct: 137 IGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYM 196
Query: 44 --------------MPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
MP + SW L++ + + L LF +++ EG + IT+V
Sbjct: 197 KCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVG 256
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA + L G+ +H Y +K + + NAL+ MYAK + A
Sbjct: 257 VLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAF---------- 306
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
VF+E+ KD W +M+ +A+ELF M+
Sbjct: 307 ----------------------SVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDML 344
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
G+ P+ VSVLSACS +Q GR L + +I ++D+ + G L
Sbjct: 345 RSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLL 404
Query: 269 EEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
EEA D + D+V W +++ A GN+ L ME +P +
Sbjct: 405 EEAEALIDHMDVEPDIVIWRSLLS--ACLAHGNDRLAEIAGMEIIKREPGD 453
>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
Length = 766
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 157/463 (33%), Positives = 244/463 (52%), Gaps = 33/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K LD D+YVG SL Y R ARV F ++ D+ SWN++++ Y+
Sbjct: 273 GEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSV 332
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L+LF ++ G+ D IT+ L AC + L++G+ +H Y K+GL+ +++
Sbjct: 333 EGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSV 392
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+LL MYA+C ++ A+ +VF EI D+D
Sbjct: 393 CNSLLSMYARCSDLSSAM--------------------------------DVFHEIKDQD 420
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W S++ C + PEE L+LF + + D + +VLSA + L + + VH
Sbjct: 421 VVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHA 480
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGN 300
+ + + D + LID Y+KCGSL++A+ F + +DV +W+++I G A +G
Sbjct: 481 YAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAK 540
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EA +F +M GI+PN TF+ VL AC G + EGC + M Y + PT EH C+
Sbjct: 541 EAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCI 600
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL+RAG L +A FI MP E I +K LL+A +++ ++GK+ A ++ +
Sbjct: 601 VDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHS 660
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AYVLL N YA G+W E A ++ M+ +K PG S + LK
Sbjct: 661 AAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLK 703
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 203/411 (49%), Gaps = 50/411 (12%)
Query: 2 GKGLHAHVTKTA-------LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNT 54
G+ +H H+ ++ L + +GN LI YGR A AR +FD+MP R+ SW +
Sbjct: 63 GRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWAS 122
Query: 55 LMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG 114
+++ + +G+ L LF ++ G AD+ L AC L + G+ VH +A K
Sbjct: 123 VIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSE 182
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF 174
L ++NAL+ MY+K NG LVD +F
Sbjct: 183 RGSDLIVQNALVTMYSK---------------------------NG-----LVDDGFMLF 210
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT-PDEEVMVSVLSACSSLSNL 233
+ I DKD++ W S++ G + EAL++F++MI EG P+E S AC ++ +
Sbjct: 211 ERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSW 270
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
+YG +H ++ + +D +V +L DMY++C +L+ A V FY+ + D+V+W +++
Sbjct: 271 EYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAY 330
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
+ GL +EAL +F +M G++P+ T +L AC + G R+ Y V+
Sbjct: 331 SVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHG-----RLIHSYLVKLG 385
Query: 354 IEH--FVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYS 400
++ VC L+ + +R L A + + +D +++ ++L+AC ++
Sbjct: 386 LDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQD-VVTWNSILTACAQHN 435
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 157/368 (42%), Gaps = 73/368 (19%)
Query: 90 LFSACARLEKLHYGKTVHCY-------ATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
L SAC+RL L G+ VH + + L + N L+ MY +C D A ++F
Sbjct: 50 LVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVF 109
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
DEM + RN VS W S++ V+ + +AL
Sbjct: 110 DEMPA-RNPVS-------------------------------WASVIAAHVQNGRAGDAL 137
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
LF M+ G D+ + S + AC+ L ++ GR VH L++ D V+ AL+ MY
Sbjct: 138 GLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMY 197
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNEATF 321
SK G +++ + F + KD+++W ++I G A G EAL+VF +M +G PNE F
Sbjct: 198 SKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHF 257
Query: 322 VSVLAACRHSGL-------------------ITEGCQL---FRRMGGV-------YRVQ- 351
S AC G + GC L + R + YR++
Sbjct: 258 GSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEA 317
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIM---PAEDKFISYKALLSACITYSEFDLGKKV 408
P + + +V+ S GLL +A M I+ + LL AC+ G+ +
Sbjct: 318 PDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLI 377
Query: 409 ANNMMKLG 416
+ ++KLG
Sbjct: 378 HSYLVKLG 385
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNN-------ITQDAFVKTALIDMYSKCGSLEEALV 273
+++SACS L +L GR VHR ++ ++ + + + LI MY +C + + A
Sbjct: 48 AALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQ 107
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F + ++ V+W ++I G +AL +F M R G ++ S + AC G
Sbjct: 108 VFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGD 167
Query: 334 ITEGCQL 340
+ G Q+
Sbjct: 168 VGTGRQV 174
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP-FRDVGSWNTLMSIY 59
M K +HA+ K L D + N+LI Y + DA LF+ M RDV SW++L+ Y
Sbjct: 474 MVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGY 533
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-----G 114
F + E LF ++ GI + +T + + +AC+R+ ++ G CY + G
Sbjct: 534 AQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEG----CYYYSIMEPEYG 589
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAR 171
+ + ++ + A+ ++ EA D+M +I+ L+ + DME+ A
Sbjct: 590 IVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAA 649
Query: 172 E 172
E
Sbjct: 650 E 650
>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
Length = 749
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 157/463 (33%), Positives = 244/463 (52%), Gaps = 33/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K LD D+YVG SL Y R ARV F ++ D+ SWN++++ Y+
Sbjct: 256 GEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSV 315
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L+LF ++ G+ D IT+ L AC + L++G+ +H Y K+GL+ +++
Sbjct: 316 EGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSV 375
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+LL MYA+C ++ A+ +VF EI D+D
Sbjct: 376 CNSLLSMYARCSDLSSAM--------------------------------DVFHEIKDQD 403
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W S++ C + PEE L+LF + + D + +VLSA + L + + VH
Sbjct: 404 VVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHA 463
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGN 300
+ + + D + LID Y+KCGSL++A+ F + +DV +W+++I G A +G
Sbjct: 464 YAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAK 523
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EA +F +M GI+PN TF+ VL AC G + EGC + M Y + PT EH C+
Sbjct: 524 EAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCI 583
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL+RAG L +A FI MP E I +K LL+A +++ ++GK+ A ++ +
Sbjct: 584 VDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHS 643
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AYVLL N YA G+W E A ++ M+ +K PG S + LK
Sbjct: 644 AAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLK 686
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 193/411 (46%), Gaps = 67/411 (16%)
Query: 2 GKGLHAHVTKTA-------LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNT 54
G+ +H H+ ++ L + +GN LI YGR + SW +
Sbjct: 63 GRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRNPV-----------------SWAS 105
Query: 55 LMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG 114
+++ + +G+ L LF ++ G AD+ L AC L + G+ VH +A K
Sbjct: 106 VIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSE 165
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF 174
L ++NAL+ MY+K NG LVD +F
Sbjct: 166 RGSDLIVQNALVTMYSK---------------------------NG-----LVDDGFMLF 193
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT-PDEEVMVSVLSACSSLSNL 233
+ I DKD++ W S++ G + EAL++F++MI EG P+E S AC ++ +
Sbjct: 194 ERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSW 253
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
+YG +H ++ + +D +V +L DMY++C +L+ A V FY+ + D+V+W +++
Sbjct: 254 EYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAY 313
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
+ GL +EAL +F +M G++P+ T +L AC + G R+ Y V+
Sbjct: 314 SVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHG-----RLIHSYLVKLG 368
Query: 354 IEH--FVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYS 400
++ VC L+ + +R L A + + +D +++ ++L+AC ++
Sbjct: 369 LDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQD-VVTWNSILTACAQHN 418
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/410 (24%), Positives = 185/410 (45%), Gaps = 41/410 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HAH K+ SD+ V N+L+ Y + L D +LF+++ +D+ SW ++++ +
Sbjct: 154 GRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQ 213
Query: 62 FSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L +F+++I EG ++ F AC + YG+ +H + K L+ L
Sbjct: 214 QGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLY 273
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +L MYA+CK +D AR F I
Sbjct: 274 VGCSLSDMYARCKNLDS--------------------------------ARVAFYRIEAP 301
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W S+++ EAL LF +M D G+ PD + +L AC L +GRL+H
Sbjct: 302 DLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIH 361
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++++ + D V +L+ MY++C L A+ F++ +DVVTW +++ A +
Sbjct: 362 SYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPE 421
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC- 359
E L++F + + + + +VL+A G Q+ ++ + +
Sbjct: 422 EVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAY---AFKAGLVDDRMLSN 478
Query: 360 -LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
L+D ++ G L A +IM S+ +L+ + Y++F K+
Sbjct: 479 TLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLI---VGYAQFGYAKEA 525
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP-FRDVGSWNTLMSIY 59
M K +HA+ K L D + N+LI Y + DA LF+ M RDV SW++L+ Y
Sbjct: 457 MVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGY 516
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-----G 114
F + E LF ++ GI + +T + + +AC+R+ ++ G CY + G
Sbjct: 517 AQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEG----CYYYSIMEPEYG 572
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAR 171
+ + ++ + A+ ++ EA D+M +I+ L+ + DME+ A
Sbjct: 573 IVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAA 632
Query: 172 E 172
E
Sbjct: 633 E 633
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 221 VSVLSACSSLSNLQYGRLVHR-FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279
+++SACS L +L GR VHR + ++ + DA + + L L+T Y
Sbjct: 48 AALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTV--------LGNHLITMYG-- 97
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339
++ V+W ++I G +AL +F M R G ++ S + AC G + G Q
Sbjct: 98 -RNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQ 156
Query: 340 L 340
+
Sbjct: 157 V 157
>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 734
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 175/531 (32%), Positives = 274/531 (51%), Gaps = 69/531 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK H+ KT D+YVG+SL++ Y + DAR LFD+MP R+ SW T++S Y
Sbjct: 137 GKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYAS 196
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + + +F+ + E + ++ L + SA ++ G+ VH A K GL ++++
Sbjct: 197 SDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSV 256
Query: 122 ENALLLMYAKCKEMDEA-------------------------------LRLFDEMGSRRN 150
NAL+ MYAKC +D+A L+LF++M S
Sbjct: 257 ANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGV 316
Query: 151 IVS-------------LNILING----------------YIDMELVDL---------ARE 172
+ S L ++ G Y+ +VD+ AR+
Sbjct: 317 LPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARK 376
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
F+ + D+VLW S++ G V+ E L L+ KM E V P+E M SVL ACSSL+
Sbjct: 377 GFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAA 436
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L G+ +H I++ + + +AL MY+KCGSL++ + F++ +DV++W MI G
Sbjct: 437 LDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISG 496
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
L+ G GN+AL +F +M +GIKP+ TFV++L+AC H GL+ G + F+ M + + P
Sbjct: 497 LSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAP 556
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
+EH+ C+VD+LSRAG L +A+EFI+ + ++ LL AC + ++LG +
Sbjct: 557 MVEHYACMVDILSRAGKLNEAKEFIESATVDHGLCLWRILLGACKNHRNYELGVYAGEKL 616
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++LG+ AYVLLS+ Y G V RR MK K+PG S I+LK
Sbjct: 617 VELGSPESSAYVLLSSIYTALGDRENVERVRRIMKARGVNKEPGCSWIELK 667
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 119/422 (28%), Positives = 205/422 (48%), Gaps = 50/422 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVG--SWNTLMSIY 59
G+ LHA + KT S IYV N+ ++ Y + + A LFD + D SWN+L+
Sbjct: 30 GRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLI--- 86
Query: 60 NDFSDSGE------VLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATK 112
N FS + + LF++++ ++ + TL +FSA + L + GK H A K
Sbjct: 87 NAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVK 146
Query: 113 VGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLARE 172
G + + ++LL MY K + +A +LFD M RN VS +I+GY ++ D A E
Sbjct: 147 TGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRM-PERNTVSWATMISGYASSDIADKAVE 205
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
VF EL ++ E +E + SVLSA +S
Sbjct: 206 VF----------------------------ELMRR---EEEIQNEFALTSVLSALTSDVF 234
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
+ GR VH ++N + V AL+ MY+KCGSL++A+ TF + K+ +TW+ M+ G
Sbjct: 235 VYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTG 294
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
A G ++AL++F +M G+ P+E T V V+ AC + EG Q+ +++
Sbjct: 295 YAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSF---AFKLGF 351
Query: 353 TIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
++ +V +VD+ ++ G L A + + + D + + ++++ + +++ G +
Sbjct: 352 GLQLYVLSAVVDMYAKCGSLADARKGFECVQQPD-VVLWTSIITGYVQNGDYEGGLNLYG 410
Query: 411 NM 412
M
Sbjct: 411 KM 412
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 144/342 (42%), Gaps = 47/342 (13%)
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
C + + G+T+H K G + + N L +YAK + AL LFD +
Sbjct: 21 CTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDN----- 75
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE---ALELFKKMID 210
DKD V W S+++ + A+ LF++M+
Sbjct: 76 -------------------------DKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMR 110
Query: 211 -EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
V P+ + V SA S+LS++ G+ H ++ + D +V ++L++MY K G +
Sbjct: 111 ANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVF 170
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+A F + ++ V+W TMI G A+ + ++A+ VF M R+ NE SVL+A
Sbjct: 171 DARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALT 230
Query: 330 HSGLITEGCQLFRRM--GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
+ G Q+ G+ + LV + ++ G L A + + I
Sbjct: 231 SDVFVYTGRQVHSLAIKNGLLAIVSVAN---ALVTMYAKCGSLDDAVRTFEF-SGDKNSI 286
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429
++ A+++ + D +KL N+ H + VL S F
Sbjct: 287 TWSAMVTGYAQGGDSD-------KALKLFNKMHSSGVLPSEF 321
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 242/463 (52%), Gaps = 33/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH + + + D+ + VG L+ Y + AR +FD M R+ SW+ ++ Y
Sbjct: 229 GKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVA 288
Query: 62 FSDSGEVLILFKQLIF-EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF Q+I + + +TL + ACA+L L G+ +HCY K+G +
Sbjct: 289 SDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDIL 348
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N LL MYAKC ++D A FDE+ K
Sbjct: 349 LGNTLLSMYAKCG--------------------------------VIDDAIRFFDEMNPK 376
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V + +++ GCV+ AL +F+ M G+ PD M+ VL ACS L+ LQ+G H
Sbjct: 377 DSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSH 436
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ D + ALIDMYSKCG + A F + D D+V+W MI G +GLG
Sbjct: 437 GYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGM 496
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F+ + G+KP++ TF+ +L++C HSGL+ EG F M + + P +EH +C+
Sbjct: 497 EALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICM 556
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L RAGL+ +A FI+ MP E + ALLSAC + +LG++V+ + LG +S
Sbjct: 557 VDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPEST 616
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLLSN Y+ G W + A R K+ +K PG S I++
Sbjct: 617 GNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEIN 659
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/406 (27%), Positives = 195/406 (48%), Gaps = 40/406 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H+H L+SD++V +L+ FY + + +A+ LF M RDV +WN +++ +
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + + L Q+ EGI + T+V + + L +GK +H Y + + + +
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVV 247
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
LL MYAKC+ + A ++FD MG RN VS + +I GY+ + + A E+FD+++ KD
Sbjct: 248 GTGLLDMYAKCQCLLYARKIFDVMGV-RNEVSWSAMIGGYVASDCMKEALELFDQMILKD 306
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ P + SVL AC+ L++L GR +H
Sbjct: 307 ------------------------------AMDPTPVTLGSVLRACAKLTDLSRGRKLHC 336
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I++ D + L+ MY+KCG +++A+ F + + KD V+++ ++ G G
Sbjct: 337 YIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAV 396
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC-- 359
AL +F M+ GI P+ T + VL AC H + G F G + + +C
Sbjct: 397 ALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG---FCSHGYLIVRGFATDTLICNA 453
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
L+D+ S+ G + A E M D +S+ A++ I Y LG
Sbjct: 454 LIDMYSKCGKISFAREVFNRMDRHD-IVSWNAMI---IGYGIHGLG 495
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 106/400 (26%), Positives = 174/400 (43%), Gaps = 41/400 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +H H K ++D V + L Y AR LFD++P V WN ++ Y
Sbjct: 27 AKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAW 86
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L+ ++ G+ +K T + AC+ L + G +H +A GLE + +
Sbjct: 87 NGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFV 146
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ YAKC + EA RLF M R D
Sbjct: 147 CTALVDFYAKCGILVEAQRLFSSMSHR--------------------------------D 174
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ GC ++A++L +M +EG+ P+ +V VL L +G+ +H
Sbjct: 175 VVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHG 234
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ ++ + V T L+DMY+KC L A F ++ V+W+ MI G E
Sbjct: 235 YCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKE 294
Query: 302 ALRVFYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQL---FRRMGGVYRVQPTIEHF 357
AL +F QM K + P T SVL AC ++ G +L ++G V +
Sbjct: 295 ALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNT-- 352
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
L+ + ++ G++ A F M +D +S+ A++S C+
Sbjct: 353 --LLSMYAKCGVIDDAIRFFDEMNPKDS-VSFSAIVSGCV 389
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 278/480 (57%), Gaps = 21/480 (4%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIY 59
K LHA + KTA D L+ F ++ D AR +F M + S+NTL+
Sbjct: 5 KQLHAQMIKTAQIRDPLAAAELLRFSA-VSDHRDLDYARKIFRSMHRPNCFSYNTLIRAL 63
Query: 60 NDFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
++ +D + L++F +++ + + + T +F AC R E+L G+ VH A K GL+
Sbjct: 64 SESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSD 123
Query: 119 LNMENALLLMYAKCKEMDEALRLF---------DEMGSRR-----NIVSLNILINGYIDM 164
+ + ++ MY C M++A RLF D + ++ ++V N++I+GY+ +
Sbjct: 124 EFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRI 183
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
+++AR +FDE+ + +V W M+ G ++ +EA+E+F++M V P+ +VSVL
Sbjct: 184 GELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVL 243
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
A S L L+ G+ VH + ++NNI D + +ALIDMY+KCGS+E+AL F ++VV
Sbjct: 244 PAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVV 303
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
TW+T+I GLA +G + L F MER G+ P++ T++ +L+AC H+GL+ EG F M
Sbjct: 304 TWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHM 363
Query: 345 GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDL 404
V ++P IEH+ C+VDLL RAGLL ++EE I MP + + +KALL AC + ++
Sbjct: 364 VRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEM 423
Query: 405 GKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL--QTRKKPGNSIIDL 462
GK+VA ++M+L +YV LSN YA G+W VA+ R MKE+ R P ++ D+
Sbjct: 424 GKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVSARWHPEDACXDM 483
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 154/469 (32%), Positives = 268/469 (57%), Gaps = 10/469 (2%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIH---------FYGRMALFTDARVLFDKMPFRDVGSWN 53
K +H + +T L SD++V + L+ F+ L A +F ++ ++ +N
Sbjct: 29 KIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQIQNPNLFVFN 88
Query: 54 TLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV 113
L+ ++ ++ + + Q++ I D IT L A +E + G+ H +
Sbjct: 89 VLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRF 148
Query: 114 GLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
G + + +EN+L+ MYA C + A R+F +M R++VS ++ GY +V+ ARE+
Sbjct: 149 GFQNDVYVENSLVHMYANCGLIAAAGRIFGQM-PFRDVVSWTSMVAGYCKCGMVEDAREM 207
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
FDE+ +++ W M++G K E+A++LF+ M EGV +E VMVSV+S+C+ L L
Sbjct: 208 FDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGAL 267
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
++G H +++++++T + + TAL+DMY +CG +E+A+ F + KD ++W+++I+GL
Sbjct: 268 EFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGL 327
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A +G ++A+ F QM R G P + T +VL+AC H GL+ +G +++ M Y ++P
Sbjct: 328 AVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPR 387
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
+EH+ C+VD+L RAG L +AE FI MP + ALL AC Y ++ ++V N ++
Sbjct: 388 LEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLI 447
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ + YVLLSN YA G W ++ R MKE +K PG S+I++
Sbjct: 448 EVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEI 496
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 140/309 (45%), Gaps = 76/309 (24%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G+ H+ + + +D+YV NSL+H Y L A +F +MPFRDV SW ++++ Y
Sbjct: 137 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYC 196
Query: 60 ---------------------------NDFSDSG---EVLILFKQLIFEGIVADKITLVI 89
N ++ + + + LF+ + EG+VA++ +V
Sbjct: 197 KCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVS 256
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ S+CA L L +G+ H Y K + L + AL+ MY +C E+++A+R
Sbjct: 257 VISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIR--------- 307
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
VF+E+ DKD + W S++ G +A+ F +M+
Sbjct: 308 -----------------------VFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMV 344
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI-LQNNITQDAFVKTAL------IDMY 262
G +P + + +VLSACS +G LV + + + N+ +D ++ L +DM
Sbjct: 345 RLGFSPRDITLTAVLSACS------HGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDML 398
Query: 263 SKCGSLEEA 271
+ G L EA
Sbjct: 399 GRAGKLAEA 407
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 249/465 (53%), Gaps = 35/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSI 58
MG+ +HA V + D+D++V N LI Y + AR +F+ +P R + SW ++S
Sbjct: 137 MGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSA 196
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y + E L +F Q+ + D + LV + +A L+ L G+++H K+GLE
Sbjct: 197 YAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIE 256
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ +L MYAKC ++ A LFD+M S
Sbjct: 257 PDLLISLNTMYAKCGQVATAKILFDKMKS------------------------------- 285
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+++LW +M+ G K EA+++F +MI++ V PD + S +SAC+ + +L+ R
Sbjct: 286 -PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARS 344
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
++ ++ +++ D F+ +ALIDM++KCGS+E A + F +T +DVV W+ MI G +G
Sbjct: 345 MYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGR 404
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EA+ ++ MER G+ PN+ TF+ +L AC HSG++ EG F RM +++ P +H+
Sbjct: 405 AREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYA 463
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C++DLL RAG L QA E IK MP + + ALLSAC + +LG+ A + +
Sbjct: 464 CVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPS 523
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ YV LSN YA W VAE R MKE K G S ++++
Sbjct: 524 NTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVR 568
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 171/367 (46%), Gaps = 33/367 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HA + L ++ LIH T AR +FD +P + WN ++ Y+
Sbjct: 38 KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ + L+++ + + D T L AC+ L L G+ VH ++G + + ++
Sbjct: 98 NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N L+ +YAKC+ + A +F+ + + ++ I
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGL------------------------------PLPERTI 187
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +++ + +P EALE+F +M V PD +VSVL+A + L +L+ GR +H
Sbjct: 188 VSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHAS 247
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+++ + + + +L MY+KCG + A + F K +++ W MI G A G EA
Sbjct: 248 VVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREA 307
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG-GVYRVQPTIEHFVCLV 361
+ +F++M K ++P+ + S ++AC G + + ++ +G YR I L+
Sbjct: 308 IDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISS--ALI 365
Query: 362 DLLSRAG 368
D+ ++ G
Sbjct: 366 DMFAKCG 372
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 164/530 (30%), Positives = 277/530 (52%), Gaps = 69/530 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+H+ +SD+ VG +L+ Y + + D R +F+K+ RD+ +WNT++ +
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E ++ Q+ EG++ +KIT VIL +AC LH+G+ +H K G + +++
Sbjct: 424 GGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV 483
Query: 122 ENALL-------------LMYAKCKEMD------------------EALRLFDEM---GS 147
+NAL+ L++ K D EAL +F +M G
Sbjct: 484 QNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGL 543
Query: 148 RRNIVS-----------------------------------LNILINGYIDMELVDLARE 172
+ N V+ N L+N Y V AR+
Sbjct: 544 KPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQ 603
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
VFD + +DIV + +M+ G +EAL+LF ++ +EG+ PD+ +++L+AC++ +
Sbjct: 604 VFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGS 663
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L++ + +H +L++ D + AL+ Y+KCGS +AL+ F K ++V++W +I G
Sbjct: 664 LEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGG 723
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
A +G G + L++F +M+ +GIKP+ TFVS+L+AC H+GL+ EG + F M + + P
Sbjct: 724 CAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITP 783
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
TIEH+ C+VDLL RAG L + E IK MP + + ALL AC + + ++ A +
Sbjct: 784 TIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESS 843
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+KL + YV LS+ YA G W A+ R+ M++ K+PG S I++
Sbjct: 844 LKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEV 893
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 214/408 (52%), Gaps = 39/408 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K L D+ V N +++ Y + +AR +FDKM + V SW ++ Y D
Sbjct: 263 GREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYAD 322
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S +F+++ EG+V ++IT + + +A + L +GKTVH + G E L +
Sbjct: 323 CGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAV 382
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYAKC GS ++ R+VF+++V++D
Sbjct: 383 GTALVKMYAKC-------------GSYKD-------------------CRQVFEKLVNRD 410
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W +M+ G + EEA E++ +M EG+ P++ V +L+AC + + L +GR +H
Sbjct: 411 LIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHS 470
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++++ D V+ ALI MY++CGS+++A + F K KD+++WT MI GLA GLG E
Sbjct: 471 RVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAE 530
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV-CL 360
AL VF M++ G+KPN T+ S+L AC + G ++ +++ + T H L
Sbjct: 531 ALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQV--IEAGLATDAHVANTL 588
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
V++ S G + A + M D ++Y A++ Y+ +LGK+
Sbjct: 589 VNMYSMCGSVKDARQVFDRMTQRD-IVAYNAMIGG---YAAHNLGKEA 632
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 136/488 (27%), Positives = 234/488 (47%), Gaps = 73/488 (14%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSIY 59
G+ +H H+ + D Y N+LI+ Y + +AR +++K+ R V SWN ++ Y
Sbjct: 160 GREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGY 219
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ E L L +++ G+ + T + L S+C L G+ +H A K L + +
Sbjct: 220 VQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDV 279
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N+ N +L MYAKC + EA +FD+M + +++VS I+I GY D
Sbjct: 280 NVANCILNMYAKCGSIHEAREVFDKMET-KSVVSWTIIIGGYAD---------------- 322
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
E A E+F+KM EGV P+ ++VL+A S + L++G+ V
Sbjct: 323 ---------------CGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTV 367
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H IL D V TAL+ MY+KCGS ++ F K +D++ W TMI GLA G
Sbjct: 368 HSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNW 427
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACR-----------HSGLITEG----------- 337
EA +++QM+R+G+ PN+ T+V +L AC HS ++ +G
Sbjct: 428 EEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNAL 487
Query: 338 CQLFRRMGGVYR--------VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA---EDKF 386
++ R G + V+ I + ++ L+++GL +A + M +
Sbjct: 488 ISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNR 547
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLG--NQSHEAYVLLSNFYALEGHWTEVAEARR 444
++Y ++L+AC + + D G+++ +++ G +H A L+ N Y++ G V +AR+
Sbjct: 548 VTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLV-NMYSMCG---SVKDARQ 603
Query: 445 NMKELQTR 452
+ R
Sbjct: 604 VFDRMTQR 611
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 94/184 (51%), Gaps = 3/184 (1%)
Query: 199 EEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTAL 258
+ A+++ + + +G + + +L C + +L GR VH I+Q+ D + AL
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182
Query: 259 IDMYSKCGSLEEALVTFYKTDC--KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
I+MY +CGS+EEA + K + + V +W M+ G YG EAL++ +M++ G+
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
AT + +L++C+ + G ++ R+ + C++++ ++ G +++A E
Sbjct: 243 GRATTMRLLSSCKSPSALECGREIHVEAMKA-RLLFDVNVANCILNMYAKCGSIHEAREV 301
Query: 377 IKIM 380
M
Sbjct: 302 FDKM 305
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/449 (34%), Positives = 255/449 (56%), Gaps = 2/449 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
++Y N+++ Y ++ + AR LFDKMP +DV SWNT++ + E L + +
Sbjct: 125 NLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFR 184
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
GI + + + + C +L+++ + VH G + + +++L Y KC M
Sbjct: 185 QLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMG 244
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+A +LFDEM S R++++ +++GY + A E+F E+ +K+ V W +++ G +
Sbjct: 245 DARKLFDEM-SARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNG 303
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
+ALELF KM+ V PD+ S L AC+S+++L++G+ +H ++L+ N + V +
Sbjct: 304 MGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVS 363
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
ALIDMYSKCGSL F K DVV W T+I LA +G G EA+++ M R G K
Sbjct: 364 ALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAK 423
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
P++ TFV +L AC HSGL+ +G F M Y + P+ EH+ CL+DLL RAG + +
Sbjct: 424 PDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMD 483
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
++ MP + + ALL C + +LG+K A +++L QS AYVLLS+ YA+ G
Sbjct: 484 QLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGR 543
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDLKH 464
W V + R+ M E Q +K+ S +++++
Sbjct: 544 WESVQKVRQLMNERQVKKERAISWLEIEN 572
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 186/401 (46%), Gaps = 35/401 (8%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN-MENAL 125
E + + L G+ D TL L CA L GK VH + GL+ + N L
Sbjct: 42 EAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHL 101
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+ MYAKC + EA ++FD+M S RN+ S N +++GY + ++ AR++FD++ +KD+V W
Sbjct: 102 INMYAKCGKEVEARKVFDKM-SARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSW 160
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+M+ + +EAL + + G+ + VL+ C L + R VH IL
Sbjct: 161 NTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILV 220
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY--------- 296
+ + ++++D Y KCG + +A F + +DV+ WTTM+ G A +
Sbjct: 221 AGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANEL 280
Query: 297 ----------------------GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
G+G++AL +F +M ++P++ TF S L AC +
Sbjct: 281 FVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASL 340
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
G Q+ + + QP L+D+ S+ G L + +M + + + ++S
Sbjct: 341 KHGKQIHAYLLRI-NFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIIS 399
Query: 395 ACITYSEFDLGKKVANNMMKLGNQSHE-AYVLLSNFYALEG 434
A + + ++ ++M++ G + + +V++ N + G
Sbjct: 400 ALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSG 440
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 149/363 (41%), Gaps = 72/363 (19%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ + +H + S++ + +S++ Y + L DAR LFD+M RDV +W T++S Y
Sbjct: 210 LTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYA 269
Query: 61 DFSD-----------------------SG--------EVLILFKQLIFEGIVADKITLVI 89
+ D SG + L LF +++ + D+ T
Sbjct: 270 KWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSS 329
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
ACA + L +GK +H Y ++ + + +AL+ MY+KC + ++FD MG++
Sbjct: 330 CLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKL 389
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
++V N +I+ LA+ HGC EEA+++ M+
Sbjct: 390 DVVLWNTIISA--------LAQ------------------HGC-----GEEAIQMLDDMV 418
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
G PD+ V +L+ACS +Q G I LID+ + G
Sbjct: 419 RSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCF 478
Query: 269 EEALVTFYKTDCK-DVVTWTTMIEGLANYG---LGNEALRVFYQMERKGIKPNEATFVSV 324
EE + K K D W ++ +G LG +A ++E P +T +
Sbjct: 479 EEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELE-----PQSSTAYVL 533
Query: 325 LAA 327
L++
Sbjct: 534 LSS 536
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 161/461 (34%), Positives = 250/461 (54%), Gaps = 32/461 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA + ++ SD+ V +L Y + DAR +F+ +P RDV +WNT++ D
Sbjct: 265 GKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVD 324
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E +F +++ E + D++T + + SACAR L GK +H A K GL +
Sbjct: 325 SGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRF 384
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY+K M +A R+VFD + +D
Sbjct: 385 GNALINMYSKAGSMKDA--------------------------------RQVFDRMPKRD 412
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G Q E+ FKKM+ +GV ++ + VL ACS+ L++G+ +H
Sbjct: 413 VVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHA 472
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+++ I D V AL+ MY KCGS+E+A+ +DVVTW T+I GLA G G E
Sbjct: 473 EVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLE 532
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL+ F M+ + ++PN TFV+V++ACR L+ EG + F M Y + PT +H+ C+V
Sbjct: 533 ALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMV 592
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L+RAG L +AE+ I MP + + ALL+AC + ++G++ A +KL Q+
Sbjct: 593 DILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAG 652
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YV LS YA G W +VA+ R+ MKE +K+PG S I++
Sbjct: 653 TYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEV 693
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 196/395 (49%), Gaps = 34/395 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H H+ + + ++Y+ N+L+ Y +AR LFDK + V SWN ++S Y
Sbjct: 62 VGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYA 121
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E LF + EG+ DK T V + SAC+ L++G+ VH + GL
Sbjct: 122 HRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNAT 181
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC + +A R+FD M SR
Sbjct: 182 VGNALISMYAKCGSVRDARRVFDAMASR-------------------------------- 209
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V W ++ ++ +E+L+ + M+ EGV P ++VLSAC SL+ L+ G+ +H
Sbjct: 210 DEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIH 269
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I+++ D V TAL MY KCG++++A F +DV+ W TMI GL + G
Sbjct: 270 AQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLE 329
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EA +F++M ++ + P+ T++++L+AC G + G ++ R V + L
Sbjct: 330 EAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVS-DVRFGNAL 388
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+++ S+AG + A + MP D +S+ AL+
Sbjct: 389 INMYSKAGSMKDARQVFDRMPKRD-VVSWTALVGG 422
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 158/337 (46%), Gaps = 34/337 (10%)
Query: 78 EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDE 137
+G D V L +C + + L GK VH E++L
Sbjct: 38 KGSQVDSYDYVKLLQSCVKAKDLAVGKQVH--------EHIL------------------ 71
Query: 138 ALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ 197
G + N+ +N L+ Y+ V+ AR +FD+ +K +V W M+ G
Sbjct: 72 ------RFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGL 125
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
+EA LF M EG+ PD+ VS+LSACSS + L +GR VH +++ + +A V A
Sbjct: 126 GQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNA 185
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LI MY+KCGS+ +A F +D V+WTT+ A G E+L+ ++ M ++G++P+
Sbjct: 186 LISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPS 245
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI 377
T+++VL+AC + +G Q+ ++ + L + + G + A E
Sbjct: 246 RITYMNVLSACGSLAALEKGKQIHAQIVESEH-HSDVRVSTALTKMYIKCGAVKDAREVF 304
Query: 378 KIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+ +P D I++ ++ + + + + + M+K
Sbjct: 305 ECLPNRD-VIAWNTMIGGLVDSGQLEEAHGMFHRMLK 340
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 7/199 (3%)
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
P + L+ + +G D V +L +C +L G+ VH IL+ + + ++
Sbjct: 28 PADVLQYLHQ---KGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINT 84
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
L+ +Y CGS+ EA F K K VV+W MI G A+ GLG EA +F M+++G++P+
Sbjct: 85 LLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPD 144
Query: 318 EATFVSVLAACRHSGLITEGCQL-FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
+ TFVS+L+AC + G ++ R M T+ + L+ + ++ G + A
Sbjct: 145 KFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGN--ALISMYAKCGSVRDARRV 202
Query: 377 IKIMPAEDKFISYKALLSA 395
M + D+ +S+ L A
Sbjct: 203 FDAMASRDE-VSWTTLTGA 220
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 171/475 (36%), Positives = 249/475 (52%), Gaps = 54/475 (11%)
Query: 40 LFDKMPFRDVGSWNTLMSIY--NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL 97
LFDK+ RDV SWN+++S Y N ++ G L ++KQ+++ GI D T++ + CA
Sbjct: 207 LFDKLCDRDVISWNSMISGYVSNGLTERG--LGIYKQMMYLGIDVDLATIISVLVGCANS 264
Query: 98 EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNIL 157
L GK VH A K E +N N LL MY+KC ++D ALR+F++MG RN+VS +
Sbjct: 265 GTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSM 323
Query: 158 INGYIDMELVD----LAREVFDEIVDKDIVLWRSMMHGCV-------------------- 193
I GY D L +++ E V D+V S++H C
Sbjct: 324 IAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383
Query: 194 ---------------KAKQPEEALELFKKMIDEGV----------TPDEEVMVSVLSACS 228
K E A +F M+ + + PD M VL AC+
Sbjct: 384 ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACA 443
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
SLS L+ G+ +H +IL+N + D V AL+D+Y KCG L A + F KD+V+WT
Sbjct: 444 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
MI G +G GNEA+ F +M GI+P+E +F+S+L AC HSGL+ +G + F M +
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDF 563
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
++P +EH+ C+VDLLSR G L +A EFI+ +P + ALL C Y + +L +KV
Sbjct: 564 NIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKV 623
Query: 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A + +L ++ YVLL+N YA W EV R + + RK PG S I++K
Sbjct: 624 AERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIK 678
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 177/366 (48%), Gaps = 49/366 (13%)
Query: 94 CARLEKLHYGKTVHCY--ATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNI 151
CA L+ GK VH + VG++ L ++ L+ YA C ++ E R+FD M ++N+
Sbjct: 109 CAGLKSFTDGKKVHSIIKSNSVGVDEALGLK--LVSFYATCGDLKEGRRVFDTM-EKKNV 165
Query: 152 VSLNILINGY--------------------IDMELVDLAREVFDEIVDKDIVLWRSMMHG 191
N +++ Y I+ + + A E+FD++ D+D++ W SM+ G
Sbjct: 166 YLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISG 225
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
V E L ++K+M+ G+ D ++SVL C++ L G+ VH ++++ +
Sbjct: 226 YVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERR 285
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
L+DMYSKCG L+ AL F K ++VV+WT+MI G G + A+++ QME+
Sbjct: 286 INFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEK 345
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH--FVC--LVDLLSRA 367
+G+K + S+L AC SG + G + Y +E FVC L+D+ ++
Sbjct: 346 EGVKLDVVAITSILHACARSGSLDNGKDVHD-----YIKANNMESNLFVCNALMDMYAKC 400
Query: 368 GLLYQAEEFIKIMPAEDKFISYKAL--------------LSACITYSEFDLGKKVANNMM 413
G + A M +D IS+ + L AC + S + GK++ ++
Sbjct: 401 GSMEAANSVFSTMVVKD-IISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYIL 459
Query: 414 KLGNQS 419
+ G S
Sbjct: 460 RNGYSS 465
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 53/246 (21%)
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA---------- 271
SVL C+ L + G+ VH I N++ D + L+ Y+ CG L+E
Sbjct: 104 SVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKK 163
Query: 272 --------------LVTFYKTDC---------------------------KDVVTWTTMI 290
+ F ++ C +DV++W +MI
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMI 223
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
G + GL L ++ QM GI + AT +SVL C +SG ++ G + +
Sbjct: 224 SGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSSF 282
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
+ I L+D+ S+ G L A + M E +S+ ++++ D K+
Sbjct: 283 ERRINFSNTLLDMYSKCGDLDGALRVFEKM-GERNVVSWTSMIAGYTRDGRSDGAIKLLQ 341
Query: 411 NMMKLG 416
M K G
Sbjct: 342 QMEKEG 347
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 159/461 (34%), Positives = 243/461 (52%), Gaps = 33/461 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ + H+ + SD V +L+ Y + DA +F+K+ ++V +WN +++ Y
Sbjct: 432 GQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQ 491
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L F+ L+ EGI + T + + C + L GK VH K GLE L++
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ M+ C ++ A LF++M R D
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMPKR--------------------------------D 579
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G V+ + + A + FK M + G+ PD+ +L+AC+S L GR +H
Sbjct: 580 LVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHA 639
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I + D V T LI MY+KCGS+E+A F+K K+V +WT+MI G A +G G E
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKE 699
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +FYQM+++G+KP+ TFV L+AC H+GLI EG F+ M + ++P +EH+ C+V
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMV 758
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL RAGLL +A EFI M E + ALL AC + +L +K A ++L +
Sbjct: 759 DLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNG 818
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+V+LSN YA G W EVA+ R+ M + KKPG S I++
Sbjct: 819 VFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEV 859
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 210/421 (49%), Gaps = 46/421 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ ++ H+ K+ + DI++ N+LI+ Y + A+ +FD M +DV SWN L+ Y
Sbjct: 129 GERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L +Q++ + + DK T V + +ACA + G+ ++ K G + L +
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ M+ KC ++ +A + VFD + +D
Sbjct: 249 GTALINMHIKCGDIGDATK--------------------------------VFDNLPTRD 276
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W SM+ G + + ++A LF++M +EGV PD+ VS+L AC+ L+ G+ VH
Sbjct: 277 LVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHA 336
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + +V TA++ MY+KCGS+E+AL F ++VV+WT MI G A +G +E
Sbjct: 337 RMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDE 396
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM-----GGVYRVQPTIEH 356
A F +M GI+PN TF+S+L AC + G Q+ + G RV+
Sbjct: 397 AFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR----- 451
Query: 357 FVCLVDLLSRAGLLYQAEE-FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
L+ + ++ G L A F KI ++ +++ A+++A + + ++D ++K
Sbjct: 452 -TALLSMYAKCGSLKDAHRVFEKI--SKQNVVAWNAMITAYVQHEQYDNALATFQALLKE 508
Query: 416 G 416
G
Sbjct: 509 G 509
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 116/403 (28%), Positives = 196/403 (48%), Gaps = 40/403 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ L+ + K D+D++VG +LI+ + + DA +FD +P RD+ +W ++++
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLAR 289
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ LF+++ EG+ DK+ V L AC E L GK VH +VG + + +
Sbjct: 290 HGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYV 349
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
A+L MY KC M++AL EVFD + ++
Sbjct: 350 GTAILSMYTKCGSMEDAL--------------------------------EVFDLVKGRN 377
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ G + + +EA F KMI+ G+ P+ +S+L ACSS S L+ G+ +
Sbjct: 378 VVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQD 437
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I++ D V+TAL+ MY+KCGSL++A F K ++VV W MI + +
Sbjct: 438 HIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDN 497
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ---LFRRMGGVYRVQPTIEHFV 358
AL F + ++GIKPN +TF S+L C+ S + G L + G ++ +
Sbjct: 498 ALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAG----LESDLHVSN 553
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
LV + G L A+ MP D +S+ +++ + + +
Sbjct: 554 ALVSMFVNCGDLMSAKNLFNDMPKRD-LVSWNTIIAGFVQHGK 595
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 185/376 (49%), Gaps = 41/376 (10%)
Query: 46 FRDVGSWNTLMSIYNDFSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHY 102
F D+ ++ N S +G E + + +++ I + T L C + + L
Sbjct: 69 FADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGD 128
Query: 103 GKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI 162
G+ ++ + K G++ + M N L+ MYAKC N +S
Sbjct: 129 GERIYNHIKKSGVQPDIFMWNTLINMYAKCG----------------NTIS--------- 163
Query: 163 DMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS 222
A+++FD++ +KD+ W ++ G V+ EEA +L ++M+ + V PD+ VS
Sbjct: 164 -------AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVS 216
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
+L+AC+ N+ GR ++ IL+ D FV TALI+M+ KCG + +A F +D
Sbjct: 217 MLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRD 276
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
+VTWT+MI GLA +G +A +F +ME +G++P++ FVS+L AC H + +G ++
Sbjct: 277 LVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHA 336
Query: 343 RMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYS 400
RM V E +V ++ + ++ G + A E ++ + +S+ A+++ +
Sbjct: 337 RMK---EVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRN-VVSWTAMIAGFAQHG 392
Query: 401 EFDLGKKVANNMMKLG 416
D N M++ G
Sbjct: 393 RIDEAFLFFNKMIESG 408
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 131/274 (47%), Gaps = 36/274 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K L+SD++V N+L+ + A+ LF+ MP RD+ SWNT+++ +
Sbjct: 532 LGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV 591
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ FK + GI DKIT L +ACA E L G+ +H T+ + +
Sbjct: 592 QHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVL 651
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ L+ MY KC +++A ++F ++ ++N+ S
Sbjct: 652 VGTGLISMYTKCGSIEDAHQVFHKL-PKKNVYS--------------------------- 683
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
W SM+ G + + +EALELF +M EGV PD V LSAC+ ++ G +H
Sbjct: 684 ----WTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEG--LH 737
Query: 241 RF--ILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
F + + NI ++D++ + G L EA+
Sbjct: 738 HFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAV 771
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 127/278 (45%), Gaps = 37/278 (13%)
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
VF +I KD ++++ KA Q EA+++ +++ + + ++L C N
Sbjct: 68 VFADI--KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L G ++ I ++ + D F+ LI+MY+KCG+ A F KDV +W ++ G
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG 185
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---------- 342
+GL EA ++ QM + +KP++ TFVS+L AC + + +G +L+
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245
Query: 343 ---------------RMGGVYRV---QPTIE--HFVCLVDLLSRAGLLYQAEEFIKIMPA 382
+G +V PT + + ++ L+R G QA + M
Sbjct: 246 LFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE 305
Query: 383 E----DKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
E DK +++ +LL AC + GKKV M ++G
Sbjct: 306 EGVQPDK-VAFVSLLRACNHPEALEQGKKVHARMKEVG 342
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 159/461 (34%), Positives = 243/461 (52%), Gaps = 33/461 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ + H+ + SD V +L+ Y + DA +F+K+ ++V +WN +++ Y
Sbjct: 432 GQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQ 491
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L F+ L+ EGI + T + + C + L GK VH K GLE L++
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ M+ C ++ A LF++M R D
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMPKR--------------------------------D 579
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G V+ + + A + FK M + G+ PD+ +L+AC+S L GR +H
Sbjct: 580 LVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHA 639
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I + D V T LI MY+KCGS+E+A F+K K+V +WT+MI G A +G G E
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKE 699
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +FYQM+++G+KP+ TFV L+AC H+GLI EG F+ M + ++P +EH+ C+V
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMV 758
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL RAGLL +A EFI M E + ALL AC + +L +K A ++L +
Sbjct: 759 DLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNG 818
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+V+LSN YA G W EVA+ R+ M + KKPG S I++
Sbjct: 819 VFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEV 859
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 210/421 (49%), Gaps = 46/421 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ ++ H+ K+ + DI++ N+LI+ Y + A+ +FD M +DV SWN L+ Y
Sbjct: 129 GERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L +Q++ + + DK T V + +ACA + G+ ++ K G + L +
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ M+ KC ++ +A + VFD + +D
Sbjct: 249 GTALINMHIKCGDIGDATK--------------------------------VFDNLPTRD 276
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W SM+ G + + ++A LF++M +EGV PD+ VS+L AC+ L+ G+ VH
Sbjct: 277 LVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHA 336
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + +V TA++ MY+KCGS+E+AL F ++VV+WT MI G A +G +E
Sbjct: 337 RMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDE 396
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM-----GGVYRVQPTIEH 356
A F +M GI+PN TF+S+L AC + G Q+ + G RV+
Sbjct: 397 AFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR----- 451
Query: 357 FVCLVDLLSRAGLLYQAEE-FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
L+ + ++ G L A F KI ++ +++ A+++A + + ++D ++K
Sbjct: 452 -TALLSMYAKCGSLKDAHRVFEKI--SKQNVVAWNAMITAYVQHEQYDNALATFQALLKE 508
Query: 416 G 416
G
Sbjct: 509 G 509
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/403 (28%), Positives = 196/403 (48%), Gaps = 40/403 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ L+ + K D+D++VG +LI+ + + DA +FD +P RD+ +W ++++
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLAR 289
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ LF+++ EG+ DK+ V L AC E L GK VH +VG + + +
Sbjct: 290 HGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYV 349
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
A+L MY KC M++AL EVFD + ++
Sbjct: 350 GTAILSMYTKCGSMEDAL--------------------------------EVFDLVKGRN 377
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ G + + +EA F KMI+ G+ P+ +S+L ACSS S L+ G+ +
Sbjct: 378 VVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQD 437
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I++ D V+TAL+ MY+KCGSL++A F K ++VV W MI + +
Sbjct: 438 HIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDN 497
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ---LFRRMGGVYRVQPTIEHFV 358
AL F + ++GIKPN +TF S+L C+ S + G L + G ++ +
Sbjct: 498 ALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAG----LESDLHVSN 553
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
LV + G L A+ MP D +S+ +++ + + +
Sbjct: 554 ALVSMFVNCGDLMSAKNLFNDMPKRD-LVSWNTIIAGFVQHGK 595
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 185/376 (49%), Gaps = 41/376 (10%)
Query: 46 FRDVGSWNTLMSIYNDFSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHY 102
F D+ ++ N S +G E + + +++ I + T L C + + L
Sbjct: 69 FADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGD 128
Query: 103 GKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI 162
G+ ++ + K G++ + M N L+ MYAKC N +S
Sbjct: 129 GERIYNHIKKSGVQPDIFMRNTLINMYAKCG----------------NTIS--------- 163
Query: 163 DMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS 222
A+++FD++ +KD+ W ++ G V+ EEA +L ++M+ + V PD+ VS
Sbjct: 164 -------AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVS 216
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
+L+AC+ N+ GR ++ IL+ D FV TALI+M+ KCG + +A F +D
Sbjct: 217 MLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRD 276
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
+VTWT+MI GLA +G +A +F +ME +G++P++ FVS+L AC H + +G ++
Sbjct: 277 LVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHA 336
Query: 343 RMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYS 400
RM V E +V ++ + ++ G + A E ++ + +S+ A+++ +
Sbjct: 337 RM---KEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRN-VVSWTAMIAGFAQHG 392
Query: 401 EFDLGKKVANNMMKLG 416
D N M++ G
Sbjct: 393 RIDEAFLFFNKMIESG 408
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 131/274 (47%), Gaps = 36/274 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K L+SD++V N+L+ + A+ LF+ MP RD+ SWNT+++ +
Sbjct: 532 LGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV 591
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ FK + GI DKIT L +ACA E L G+ +H T+ + +
Sbjct: 592 QHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVL 651
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ L+ MY KC +++A ++F ++ ++N+ S
Sbjct: 652 VGTGLISMYTKCGSIEDAHQVFHKL-PKKNVYS--------------------------- 683
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
W SM+ G + + +EALELF +M EGV PD V LSAC+ ++ G +H
Sbjct: 684 ----WTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEG--LH 737
Query: 241 RF--ILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
F + + NI ++D++ + G L EA+
Sbjct: 738 HFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAV 771
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 128/278 (46%), Gaps = 37/278 (13%)
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
VF +I KD ++++ KA Q EA+++ +++ + + ++L C N
Sbjct: 68 VFADI--KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L G ++ I ++ + D F++ LI+MY+KCG+ A F KDV +W ++ G
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG 185
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---------- 342
+GL EA ++ QM + +KP++ TFVS+L AC + + +G +L+
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245
Query: 343 ---------------RMGGVYRV---QPTIE--HFVCLVDLLSRAGLLYQAEEFIKIMPA 382
+G +V PT + + ++ L+R G QA + M
Sbjct: 246 LFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE 305
Query: 383 E----DKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
E DK +++ +LL AC + GKKV M ++G
Sbjct: 306 EGVQPDK-VAFVSLLRACNHPEALEQGKKVHARMKEVG 342
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 159/461 (34%), Positives = 256/461 (55%), Gaps = 3/461 (0%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
H+ + L + + LI Y +R++FD + ++V WN+L++ Y
Sbjct: 46 HSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLY 105
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
E LF Q+ ++ D TL L + L L GK++H + ++G + N++
Sbjct: 106 NEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSI 165
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+ MY KC +E+ ++FDEM + RN S N+LI GY + + R VFD + +++ W
Sbjct: 166 MSMYCKCGNFEESRKVFDEM-TIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSW 224
Query: 186 RSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
+M++G V+ +EAL LF+ M + +G+ P+ +VSVL ACSS S L GR +H F +
Sbjct: 225 TAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAV 284
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD-CKDVVTWTTMIEGLANYGLGNEAL 303
+ + + + ALIDMYSKCGSL+ A F CKD ++W++MI G +G G EA+
Sbjct: 285 RKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAI 344
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
++ +M + GI+P+ T V +L+AC SGL+ EG ++ + Y ++PT+E F C+VD+
Sbjct: 345 LLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDM 404
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L RAG L A +FIK MP E + AL+S I + + ++ + +++L ++ Y
Sbjct: 405 LGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNY 464
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
V +SN YA W VAE RR MK+ + RK PG S I + +
Sbjct: 465 VSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINN 505
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 137/304 (45%), Gaps = 64/304 (21%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
GK +H + SD V NS++ Y + F ++R +FD+M R+ GSWN L++ Y
Sbjct: 143 GKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAV 202
Query: 60 -----------------NDFS------------DSGEVLILFKQL-IFEGIVADKITLVI 89
N FS DS E L LF+ + + +GI ++++LV
Sbjct: 203 SGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVS 262
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ AC+ L G+ +H +A + L +++ NAL+ MY+KC +D A R+F+
Sbjct: 263 VLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFE------ 316
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D+ + KD + W SM+ G + +EA+ L+ KM+
Sbjct: 317 -------------------------DDSLCKDAISWSSMISGYGLHGKGQEAILLYDKML 351
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSL 268
G+ PD V +LSACS + G ++ ++ + I + ++DM + G L
Sbjct: 352 QAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQL 411
Query: 269 EEAL 272
+ AL
Sbjct: 412 DPAL 415
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%)
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
+L+ R H IL ++Q++ + T LI Y+ C + + F K+V W ++I
Sbjct: 38 SLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLIN 97
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
G A L NEA ++F QM + P++ T ++ G + G
Sbjct: 98 GYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSG 143
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 165/499 (33%), Positives = 263/499 (52%), Gaps = 40/499 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHAH+ L Y L+ FY ++AR LFDK+P ++ W L
Sbjct: 822 GRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACAR 881
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L F ++ EG+ ++ L + AC L G+ +H K E +
Sbjct: 882 RGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYI 941
Query: 122 ENALLLMYAKCKEMDEALRLFD----------------------------------EMGS 147
+AL+ MY+KC +++A R+FD + G
Sbjct: 942 ISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGV 1001
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEI----VDKDIVLWRSMMHGCVKAKQPEEALE 203
+ N+VS N LI G+ + + EVF + V+ D+V W S++ G V+ E +
Sbjct: 1002 KPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFD 1061
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
FK+M+D+G P + S+L AC++++NL++G+ +H + + + +D +V++AL+DMY+
Sbjct: 1062 AFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYA 1121
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KCG + EA + FY ++ VTW ++I G AN+G NEA+ +F QME K + TF +
Sbjct: 1122 KCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTA 1181
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
VL AC H+G++ G LF +M YR++P +EH+ C+VDLL RAG L +A + IK MP E
Sbjct: 1182 VLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVE 1241
Query: 384 -DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442
DKF+ + ALL AC + +L + A ++ +L +S + +LLSN YA G W A+
Sbjct: 1242 PDKFV-WGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKM 1300
Query: 443 RRNMKELQTRKKPGNSIID 461
++ MK+ + K PG S I+
Sbjct: 1301 KKMMKQRKFGKFPGCSWIE 1319
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 142/463 (30%), Positives = 237/463 (51%), Gaps = 31/463 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LHAHV K S+ VGN+L+ Y + + +A ++F+ + R++ SW ++ +
Sbjct: 233 GKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQ 292
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D + L F + GI ++ T I+ ++C ++ G+ H K G+ + +
Sbjct: 293 HGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFV 352
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
A++ MY+ EMDEA + F +MG + VS N LI GY+ E +
Sbjct: 353 GTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKI-------------- 398
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
E+A+E F +M+ E V +E ++ ACSS +L +H
Sbjct: 399 -----------------EKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHS 441
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++++N+ + V ++LI+ Y++CGSLE A+ F + DVV+W ++I+ + G +
Sbjct: 442 RLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWK 501
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ + +M +G KP TF++VL+AC HSGL+ EG + F+ M Y +QP H C+V
Sbjct: 502 AIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMV 561
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L RAG L A +FIK + + ++ LL+AC S + + VA ++ L
Sbjct: 562 DILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDAT 621
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YV LSN YA G W + RR M++ + K+PG S I++ +
Sbjct: 622 VYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNN 664
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 101/397 (25%), Positives = 176/397 (44%), Gaps = 37/397 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ H V K L SD +V SLI Y + A ++DKM D + N L+S Y
Sbjct: 131 LGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYA 190
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ +F Q+ G + T + + C + + GK +H + K+
Sbjct: 191 RNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETA 250
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NALL +Y+KC M+EA +F+ + +RNI+S ING+
Sbjct: 251 VGNALLTLYSKCGMMEEAEIVFESL-RQRNIISWTASINGFYQ----------------- 292
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
HG K +AL+ F M + G+ P+E VL++C + + GR+ H
Sbjct: 293 ---------HGDFK-----KALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFH 338
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD-CKDVVTWTTMIEGLANYGLG 299
+++ + FV TA+IDMYS G ++EA F + V+W +I G
Sbjct: 339 TQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKI 398
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+A+ F +M ++ + NE T+ ++ AC + Q+ R+ V+ +
Sbjct: 399 EKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKS-NVESNLHVASS 457
Query: 360 LVDLLSRAGLLYQA-EEFIKIMPAEDKFISYKALLSA 395
L++ ++ G L A + F +I A+ +S+ +++ A
Sbjct: 458 LIEAYTQCGSLENAVQVFTQISDAD--VVSWNSIIKA 492
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 164/350 (46%), Gaps = 39/350 (11%)
Query: 95 ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSL 154
AR L+ G+ +H + +GL + L+ Y +C ++ A
Sbjct: 814 ARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNA---------------- 857
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
R++FD+I + +I W + C + EEAL F +M EG+
Sbjct: 858 ----------------RKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLR 901
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
P++ V+ S+L AC LS+ + G +H IL+N+ DA++ +ALI MYSKCG +E+A
Sbjct: 902 PNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRV 961
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F KD+V M+ G A +G +EAL + +M++ G+KPN ++ +++A G
Sbjct: 962 FDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDK 1021
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE---DKFISYKA 391
+ ++FR M V+P + + ++ + ++ + K M + ++ +
Sbjct: 1022 SMVSEVFRLMTA-NGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISS 1080
Query: 392 LLSACITYSEFDLGKKVANNMMKLGNQSHEAYV--LLSNFYALEGHWTEV 439
LL AC + GK++ M +G + + YV L + YA G+ +E
Sbjct: 1081 LLPACTNVANLRHGKEIHGYAMVIGVEK-DVYVRSALVDMYAKCGYISEA 1129
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 150/313 (47%), Gaps = 44/313 (14%)
Query: 90 LFSA---CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+FSA C R + G+ HC+ K+GL + +L+ MYAKC E+D A+R++D+M
Sbjct: 116 VFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMT 175
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
S + + N LI+ Y AR F +A ++F
Sbjct: 176 SL-DAATCNCLISAY--------ARNGFFV-----------------------QAFQVFM 203
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
++ + G P+ ++L+ C ++S +Q G+ +H +++ + V AL+ +YSKCG
Sbjct: 204 QIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCG 263
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+EEA + F +++++WT I G +G +AL+ F M GI+PNE TF VLA
Sbjct: 264 MMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLA 323
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIMPA 382
+C +G RM ++ + V ++D+ S G + +AE+ K M
Sbjct: 324 SCGCVKDFIDG-----RMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGR 378
Query: 383 EDKFISYKALLSA 395
+S+ AL++
Sbjct: 379 AASNVSWNALIAG 391
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 130/286 (45%), Gaps = 18/286 (6%)
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE-- 203
G + +S ++ G++D+ + E + + I S GC PEE ++
Sbjct: 38 GPYKGCMSKGNVVGGWVDLNNACILFEKTPKRIGVSIT--ESHRSGCTD--DPEEGVKEA 93
Query: 204 -LFKKMIDE-----GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
F + G P + + S LS C ++ GR H F+++ + D FV T+
Sbjct: 94 GFFTRNETPHVEFGGGFPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTS 153
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LIDMY+KCG ++ A+ + K D T +I A G +A +VF Q+ G +PN
Sbjct: 154 LIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPN 213
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEE 375
T+ ++LA C I EG QL V ++Q E V L+ L S+ G++ +AE
Sbjct: 214 HYTYSTMLAVCGTISAIQEGKQLHAH---VVKMQYLSETAVGNALLTLYSKCGMMEEAEI 270
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
+ + + IS+ A ++ + +F K + M + G + +E
Sbjct: 271 VFESL-RQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNE 315
>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 159/493 (32%), Positives = 265/493 (53%), Gaps = 36/493 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ V K L S + V NS+++ YG+ AR +F++M R SWN ++S+Y
Sbjct: 181 IGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYT 240
Query: 61 DFSDSGEVLILFKQLIFEGIVA--------------------------------DKITLV 88
L +F+ + IV+ D+ T+
Sbjct: 241 HQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVT 300
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE-MGS 147
+ SACA L L GK +H Y + G+ Y + NAL+ YAK ++ A R+ D+ + +
Sbjct: 301 SVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVA 360
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
N++S L+ GY+ + AREVFD + ++D++ W +M+ G + Q +EA+ELF+
Sbjct: 361 DLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRS 420
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
MI G P+ + +VLSAC+SL+ L YG+ +H +++ Q V A+I +Y++ GS
Sbjct: 421 MIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGS 480
Query: 268 LEEALVTFYKTDC--KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
+ A F + C K+ VTWT+MI LA +GLG +A+ +F +M R G+KP+ T++ V
Sbjct: 481 VPLARRVFDQI-CWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVF 539
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+AC H+G I +G + + +M + + P + H+ C+VDLL+RAGLL +A EFI+ MP
Sbjct: 540 SACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPD 599
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
+ + +LL+AC DL + A ++ + + AY L+N Y+ G W + A +
Sbjct: 600 TVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKL 659
Query: 446 MKELQTRKKPGNS 458
K+ +K+ G S
Sbjct: 660 RKDKAVKKETGFS 672
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 139/550 (25%), Positives = 237/550 (43%), Gaps = 114/550 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMAL----FTDARVLFDKMPF--RDVGSWNTL 55
G+ +HAH K L Y+ N+L+ +Y R + F +AR LFD +P+ R+ +WN+L
Sbjct: 44 GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSL 103
Query: 56 MSIYNDFSDSGEVLILFKQ-------------------------------LIFEGIVADK 84
+S+Y + ++F Q ++ EG+ +
Sbjct: 104 LSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQ 163
Query: 85 ITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE 144
L + S+CA E G+ VH + K+GL + + N++L MY KC + + A +F+
Sbjct: 164 FMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFER 223
Query: 145 MGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
M R S N +++ Y +DLA +F+ + ++ IV W +++ G + + AL+
Sbjct: 224 MKVRSE-SSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKF 282
Query: 205 FKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
F +M+ + PDE + SVLSAC++L L+ G+ +H +IL+ + + + ALI Y+
Sbjct: 283 FSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYA 342
Query: 264 KCGSLE---------------------------------EALVTFYKTDCKDVVTWTTMI 290
K GS+E +A F + +DV+ WT MI
Sbjct: 343 KSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMI 402
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL---------- 340
G G +EA+ +F M R G +PN T +VL+AC + G Q+
Sbjct: 403 VGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQE 462
Query: 341 ------------FRRMGGVYRVQPTIEH---------FVCLVDLLSRAGLLYQA----EE 375
+ R G V + + + ++ L++ GL QA EE
Sbjct: 463 QSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEE 522
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK----LGNQSHEAYVLLSNFYA 431
+++ D+ ++Y + SAC D GK+ M+ + SH Y + + A
Sbjct: 523 MLRVGVKPDR-VTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSH--YACMVDLLA 579
Query: 432 LEGHWTEVAE 441
G TE E
Sbjct: 580 RAGLLTEAHE 589
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 174/385 (45%), Gaps = 48/385 (12%)
Query: 103 GKTVHCYATKVGLEYMLNMENALLLMYAKCKE----MDEALRLFDEMG-SRRNIVSLNIL 157
G+ +H +A K GL + N LL YA+ EA RLFD++ +RRN + N L
Sbjct: 44 GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSL 103
Query: 158 INGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217
++ Y + AR VF ++ ++D V W M+ G +A + +A++ F M+ EG+ P +
Sbjct: 104 LSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQ 163
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
++ +VLS+C++ GR VH F+++ ++ V +++ MY KCG E A F +
Sbjct: 164 FMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFER 223
Query: 278 TDC-------------------------------KDVVTWTTMIEGLANYGLGNEALRVF 306
+ +V+W +I G GL + AL+ F
Sbjct: 224 MKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFF 283
Query: 307 YQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMGGVYRVQPTIEHFVCLVD 362
+M ++P+E T SVL+AC + ++ G Q+ R G Y Q L+
Sbjct: 284 SRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQI----MNALIS 339
Query: 363 LLSRAGLLYQAEEFI-KIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
+++G + A + K + A+ IS+ ALL + + ++V + M N+
Sbjct: 340 TYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVM---NNRDVI 396
Query: 422 AYVLLSNFYALEGHWTEVAEARRNM 446
A+ + Y G E E R+M
Sbjct: 397 AWTAMIVGYEQNGQNDEAMELFRSM 421
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 167/464 (35%), Positives = 257/464 (55%), Gaps = 7/464 (1%)
Query: 3 KGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +H H+ + L Y+ NSL+ FY + F A +F +MP DV S+N ++ Y
Sbjct: 150 KQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAK 209
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E L L+ +++ +GI D+ T++ L C L + GK VH + + G Y N+
Sbjct: 210 QGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNL 269
Query: 122 --ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
NALL MY KCKE A R FD M ++++ S N ++ G++ + ++ A+ VFD++
Sbjct: 270 ILSNALLDMYFKCKESGLAKRAFDAM-KKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPK 328
Query: 180 KDIVLWRSMMHGCVKAKQPEEAL-ELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+D+V W S++ G K + + ELF +M I E V PD MVS++S ++ L +GR
Sbjct: 329 RDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGR 388
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH +++ + DAF+ +ALIDMY KCG +E A + F KDV WT+MI GLA +G
Sbjct: 389 WVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHG 448
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G +AL++F +M+ +G+ PN T ++VL AC HSGL+ EG +F M + P EH+
Sbjct: 449 NGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHY 508
Query: 358 VCLVDLLSRAGLLYQAEEFI-KIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
LVDLL RAG + +A++ + K MP + ++LSAC + + + ++KL
Sbjct: 509 GSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLE 568
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
+ YVLLSN YA G W + R M+ +K G S +
Sbjct: 569 PEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSV 612
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V + L D ++ ++LI Y + + A ++F +DV W ++++
Sbjct: 387 GRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAF 446
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
+ + L LF ++ EG+ + +TL+ + +AC+
Sbjct: 447 HGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACS 480
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 251/463 (54%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH+ + K SD++ L+ Y + + DAR +D MP +D+ +WN L+S Y+
Sbjct: 302 LGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYS 361
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D + + LF ++ E I ++ TL + + A L+ + K +H + K G+
Sbjct: 362 QCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFY 421
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+LL Y KC +DEA ++F+E +
Sbjct: 422 VINSLLDTYGKCNHIDEA--------------------------------SKIFEERTWE 449
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V + SM+ + EEAL+L+ +M D + PD + S+L+AC++LS + G+ +H
Sbjct: 450 DLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLH 509
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ D F +L++MY+KCGS+E+A F + + +V+W+ MI G A +G G
Sbjct: 510 VHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGK 569
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EALR+F QM R G+ PN T VSVL AC H+GL+ EG Q F +M ++ ++PT EH+ C+
Sbjct: 570 EALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACM 629
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLL R+G L +A E + +P E + ALL A + +LG+K A + L +
Sbjct: 630 IDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKS 689
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLL+N YA G W VA+ R+ MK+ + +K+PG S I++K
Sbjct: 690 GTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIK 732
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 189/395 (47%), Gaps = 42/395 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY--NDF 62
LHAH+ K D + N L+ Y + F AR L D+ DV SW++L+S Y N F
Sbjct: 3 LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ E L++F ++ G+ ++ T + AC+ L+ G+ VH A G E +
Sbjct: 63 VE--EALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N L++MYAKC L+D +R +F IV++++
Sbjct: 121 NTLVVMYAKCG--------------------------------LLDDSRRLFGGIVERNV 148
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W ++ V+++ EA+ LFK+M+ G+ P+E + +L+AC+ L GR +H
Sbjct: 149 VSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGL 208
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+L+ + D F AL+DMYSK G +E A+ F DVV+W +I G + + A
Sbjct: 209 MLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLA 268
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF--VCL 360
L + +M+ G +PN T S L AC G G QL + ++ + F V L
Sbjct: 269 LMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSL---IKMDAHSDLFAAVGL 325
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
VD+ S+ ++ A MP +D I++ AL+S
Sbjct: 326 VDMYSKCEMMDDARRAYDSMPKKD-IIAWNALISG 359
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 128/490 (26%), Positives = 218/490 (44%), Gaps = 77/490 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +H T +SD +V N+L+ Y + L D+R LF + R+V SWN L S Y
Sbjct: 100 MGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYV 159
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
GE + LFK+++ GI+ ++ ++ I+ +ACA L++ G+ +H K+GL+
Sbjct: 160 QSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQF 219
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
NAL+ MY+K E++ A+ +F ++ + ++VS N +I G + + DLA + DE
Sbjct: 220 SANALVDMYSKAGEIEGAVAVFQDI-AHPDVVSWNAIIAGCVLHDCNDLALMLLDE---- 274
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
M G P+ + S L AC+++ + GR +H
Sbjct: 275 ---------------------------MKGSGTRPNMFTLSSALKACAAMGFKELGRQLH 307
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + D F L+DMYSKC +++A + KD++ W +I G + G
Sbjct: 308 SSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHL 367
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAA---------CR--HSGLITEG------------ 337
+A+ +F +M + I N+ T +VL + C+ H+ I G
Sbjct: 368 DAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLL 427
Query: 338 -----CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK---------IMPAE 383
C ++ + T E V +++ EE +K I P
Sbjct: 428 DTYGKCNHIDEASKIFE-ERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKP-- 484
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE-AYVLLSNFYALEGHWTEVAEA 442
D FI +LL+AC S ++ GK++ + +K G A L N YA G + +A
Sbjct: 485 DPFIC-SSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCG---SIEDA 540
Query: 443 RRNMKELQTR 452
R E+ R
Sbjct: 541 DRAFSEIPNR 550
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 149/318 (46%), Gaps = 40/318 (12%)
Query: 106 VHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME 165
+H + K G ++ N L+ +Y+KC+ GY
Sbjct: 3 LHAHLIKFGFSRDPSLRNHLVTLYSKCRRF------------------------GY---- 34
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS 225
AR++ DE + D+V W S++ G V+ EEAL +F +M GV +E SVL
Sbjct: 35 ----ARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLK 90
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
ACS +L GR VH + D FV L+ MY+KCG L+++ F ++VV+
Sbjct: 91 ACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVS 150
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
W + L EA+ +F +M R GI PNE + +L AC +GL EG L R++
Sbjct: 151 WNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNAC--AGL-QEG-DLGRKIH 206
Query: 346 GV-YRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
G+ ++ ++ F LVD+ S+AG + A + + D +S+ A+++ C+ +
Sbjct: 207 GLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPD-VVSWNAIIAGCVLHDCN 265
Query: 403 DLGKKVANNMMKLGNQSH 420
DL + + M G + +
Sbjct: 266 DLALMLLDEMKGSGTRPN 283
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 159/465 (34%), Positives = 264/465 (56%), Gaps = 6/465 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HAH+ K +L ++ ++ A A +LF ++ + +N ++ Y
Sbjct: 31 KKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHN 90
Query: 63 SDSGEVLILFKQLIFEG-----IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ ++KQ++ I DK T + +CA L GK VH + K G +
Sbjct: 91 KVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 150
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+EN+L+ MY KC +D+A ++F+EM + R+ VS N LI+G++ + + AR +F+E+
Sbjct: 151 NTVVENSLVEMYVKCDSLDDAHKVFEEM-TERDAVSWNTLISGHVRLGQMRRARAIFEEM 209
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
DK I W +++ G + +ALE F++M G+ PDE +VSVL AC+ L L+ G+
Sbjct: 210 QDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGK 269
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H + + ++ V ALI+MY+KCGS++E F + + +DV++W+TMI GLAN+G
Sbjct: 270 WIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHG 329
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+EA+ +F +M++ I+PN TFV +L+AC H+GL+ EG + F M Y ++P +EH+
Sbjct: 330 RAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHY 389
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
CLV+LL +G L QA E IK MP + + +LLS+C ++S ++ ++++L
Sbjct: 390 GCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELEP 449
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA G W V+ R+ M+ +K PG S I++
Sbjct: 450 ADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEV 494
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 137/323 (42%), Gaps = 65/323 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
+GK +H HV K S+ V NSL+ Y + DA +F++M RD SWNTL+S
Sbjct: 135 LGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHV 194
Query: 58 ----------IYNDFSDS------------------GEVLILFKQLIFEGIVADKITLVI 89
I+ + D + L F+++ GI D+I+LV
Sbjct: 195 RLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVS 254
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ ACA+L L GK +H YA K G + + NAL+ MYAKC +DE RLFD+M R
Sbjct: 255 VLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNER- 313
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D++ W +M+ G + EA+ELF++M
Sbjct: 314 -------------------------------DVISWSTMIVGLANHGRAHEAIELFQEMQ 342
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+ P+ V +LSAC+ L G R NI L+++ G L
Sbjct: 343 KAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRL 402
Query: 269 EEALVTFYKTDCK-DVVTWTTMI 290
++AL K K D W +++
Sbjct: 403 DQALELIKKMPMKPDSAIWGSLL 425
>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 151/464 (32%), Positives = 248/464 (53%), Gaps = 31/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MGK +H K + S+++VG++L Y + DA +F++MP +D SW ++ Y+
Sbjct: 59 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 118
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L+ FK++I E + D+ L AC L+ +G++VH K+G E +
Sbjct: 119 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 178
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL MY+K +M+ A +F RN+VS LI+GY++ E
Sbjct: 179 VGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETE--------------- 223
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
Q E+ L +F ++ +G+ P+E S++ AC++ + L+ G +H
Sbjct: 224 ----------------QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLH 267
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ N +D FV + L+DMY KCG LE+A+ F + + W +++ +GLG
Sbjct: 268 AQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGK 327
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+A+++F +M +G+KPN TF+S+L C H+GL+ EG F M Y V P EH+ C+
Sbjct: 328 DAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCV 387
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLL RAG L +A+EFI MP E + + L AC + + ++GK A ++KL ++
Sbjct: 388 IDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNS 447
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
A VLLSN YA E W +V R M++ +K PG S +D+ +
Sbjct: 448 GALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGY 491
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 184/368 (50%), Gaps = 46/368 (12%)
Query: 44 MPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG 103
MP R++ SW ++S + S E + F + G V + ACA L + G
Sbjct: 1 MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60
Query: 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
K +HC A K G+ L + + L MY+KC M +A ++F+EM
Sbjct: 61 KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPC---------------- 104
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223
KD V W +M+ G K + EEAL FKKMIDE VT D+ V+ S
Sbjct: 105 ----------------KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCST 148
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF-YKTDCKD 282
L AC +L ++GR VH +++ D FV AL DMYSK G +E A F ++C++
Sbjct: 149 LGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRN 208
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
VV++T +I+G + L VF ++ R+GI+PNE TF S++ AC + + +G QL
Sbjct: 209 VVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHA 268
Query: 343 RMGGVYRVQPTIEHFVC--LVDLLSRAGLLYQA-EEFIKIM-PAEDKFISYKALLSACIT 398
+ V ++ + FV LVD+ + GLL QA + F +I P E I++ +L+S
Sbjct: 269 Q---VMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTE---IAWNSLVS---V 319
Query: 399 YSEFDLGK 406
+ + LGK
Sbjct: 320 FGQHGLGK 327
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 118/245 (48%), Gaps = 7/245 (2%)
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+++V W +M+ G + + EA+ F M G P + S + AC+SL +++ G+ +
Sbjct: 4 RNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM 63
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H L+ I + FV + L DMYSKCG++ +A F + CKD V+WT MI+G + G
Sbjct: 64 HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEF 123
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM-GGVYRVQPTIEHFV 358
EAL F +M + + ++ S L AC + C+ R + V ++ + FV
Sbjct: 124 EEALLAFKKMIDEEVTIDQHVLCSTLGACG----ALKACKFGRSVHSSVVKLGFESDIFV 179
Query: 359 --CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L D+ S+AG + A I +SY L+ + + + G V + + G
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 239
Query: 417 NQSHE 421
+ +E
Sbjct: 240 IEPNE 244
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 177/531 (33%), Positives = 271/531 (51%), Gaps = 69/531 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ HA K A D++VG+SL++ Y + L +AR +FD+MP R+ +W T++S Y
Sbjct: 130 GQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAI 189
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+GE +F+ + E ++ + SA A E + GK +HC A K GL L++
Sbjct: 190 QRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSI 249
Query: 122 ENALLLMY-------------------------------AKCKEMDEALRLFDEM---GS 147
NAL+ MY A+ + +AL+LF M G
Sbjct: 250 LNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGI 309
Query: 148 RRNIVSLNILING--------------------------YIDMELVDL---------ARE 172
+ +L ++N YI LVD+ AR+
Sbjct: 310 NPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARK 369
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
F+ + D+VLW SM+ G V+ + E+AL L+ +M EG+ P+E M SVL ACS+L+
Sbjct: 370 GFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAA 429
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
GR +H ++ + + + +AL MY+KCG+LEE + F + +D+++W MI G
Sbjct: 430 FDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISG 489
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
L+ G G EAL +F +M ++ KP++ TFV+VL+AC H GL+ G FR M + + P
Sbjct: 490 LSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLP 549
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
+EH+ C+VD+LSRAG LY+A+EFI+ + ++ LL AC Y ++LG +
Sbjct: 550 KVEHYACMVDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKL 609
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
M+LG+Q AYVLLS Y G +V R MK K+PG S I+LK
Sbjct: 610 MELGSQESSAYVLLSGIYTALGRPEDVERVRSMMKVRGVSKEPGCSWIELK 660
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/454 (27%), Positives = 209/454 (46%), Gaps = 74/454 (16%)
Query: 2 GKGLHAHVTKTALDSD-IYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ LHA + K A S IY+ NSLI+FY + A+++FD++ +DV SWN L++ Y+
Sbjct: 26 GRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYS 85
Query: 61 DFSDSGE--VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+G V+ LF+++ + I+ + T +F+A + L + +G+ H A K+ Y
Sbjct: 86 QQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYD 145
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + ++LL MY K + EA +FD M RN V+ +I+GY L
Sbjct: 146 VFVGSSLLNMYCKAGLLFEAREVFDRM-PERNEVTWATMISGYAIQRLAG---------- 194
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
EA E+F+ M E +E SVLSA + + G+
Sbjct: 195 ---------------------EAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQ 233
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++ + + AL+ MY+KCGSL+++L F ++ K+ +TW+ MI G A G
Sbjct: 234 IHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGD 293
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---------------- 342
++AL++F +M GI P+E T V VL AC + + EG Q+
Sbjct: 294 SHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTA 353
Query: 343 --------------RMGGVYRVQPTIEHFVCLVDLLSRAG------LLYQAEEFIKIMPA 382
R G Y QP + + ++ + G LY + I+P
Sbjct: 354 LVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPN 413
Query: 383 EDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
E ++ ++L AC + FD G+++ +K G
Sbjct: 414 E---LTMASVLKACSNLAAFDQGRQIHARTIKYG 444
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 252/467 (53%), Gaps = 35/467 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+ V K SDI V N+LI Y R DAR++FDKM +DV SW ++
Sbjct: 347 GKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAK 406
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L +++++ G+ +++T + +AC+ L +G+ +H + GL ++
Sbjct: 407 SGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHV 466
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L+ MY+ C + +A R+VFD ++ +D
Sbjct: 467 GNTLVNMYSMCGSVKDA--------------------------------RQVFDRMIQRD 494
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV + +M+ G +EAL+LF ++ +EG+ PD+ +++L+AC++ +L++ R +H
Sbjct: 495 IVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHT 554
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + D V AL+ Y+KCGS +A + F K ++V++W +I G A +G G +
Sbjct: 555 LVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQD 614
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL++F +M+ +G+KP+ TFVS+L+AC H+GL+ EG + F M + + PTIEH+ C+V
Sbjct: 615 ALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMV 674
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +AE IK MP + + ALL AC + + ++ A + +KL +
Sbjct: 675 DLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAV 734
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII---DLKHY 465
YV LS+ YA G W A+ R+ M++ K+PG S I D HY
Sbjct: 735 VYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHY 781
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 209/408 (51%), Gaps = 39/408 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + L D+ V N +++ Y + +AR +FDKM + V SW + Y D
Sbjct: 145 GREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYAD 204
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S +F+++ EG+V ++IT + + +A + L +GK VH G E +
Sbjct: 205 CGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAV 264
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYAKC GS ++ R+VF+++V++D
Sbjct: 265 GTALVKMYAKC-------------GSYKD-------------------CRQVFEKLVNRD 292
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W +M+ G + EEA E++ +M EGV P++ V +L+AC + + L +G+ +H
Sbjct: 293 LIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHS 352
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + T D V+ ALI MYS+CGS+++A + F K KDV++WT MI GLA G G E
Sbjct: 353 RVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAE 412
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV-CL 360
AL V+ +M++ G++PN T+ S+L AC + G ++ +++ V T H L
Sbjct: 413 ALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQV--VEAGLATDAHVGNTL 470
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
V++ S G + A + M D ++Y A++ Y+ +LGK+
Sbjct: 471 VNMYSMCGSVKDARQVFDRMIQRD-IVAYNAMIGG---YAAHNLGKEA 514
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 135/480 (28%), Positives = 234/480 (48%), Gaps = 73/480 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSIY 59
G+ +H H+ + D Y N+LI+ Y + +AR ++ K+ + R V SWN ++ Y
Sbjct: 42 GRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGY 101
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ + L L +Q+ G+ D+ T++ S+C L +G+ +H A + GL + +
Sbjct: 102 IQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDV 161
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ N +L MYAKC ++EA +FD+M ++++VS I I GY D
Sbjct: 162 KVANCILNMYAKCGSIEEAREVFDKM-EKKSVVSWTITIGGYAD---------------- 204
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
C ++ E A E+F+KM EGV P+ +SVL+A SS + L++G+ V
Sbjct: 205 ------------CGRS---ETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAV 249
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H IL D V TAL+ MY+KCGS ++ F K +D++ W TMI GLA G
Sbjct: 250 HSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYW 309
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG--------GVYR-- 349
EA V+ QM+R+G+ PN+ T+V +L AC +S + G ++ R+ GV
Sbjct: 310 EEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNAL 369
Query: 350 --------------------VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP---AEDKF 386
V+ + + ++ L+++G +A + M E
Sbjct: 370 ISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNR 429
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLG--NQSHEAYVLLSNFYALEGHWTEVAEARR 444
++Y ++L+AC + + + G+++ +++ G +H L+ N Y++ G V +AR+
Sbjct: 430 VTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLV-NMYSMCG---SVKDARQ 485
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 98/187 (52%), Gaps = 5/187 (2%)
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
+ + A+++ + + +G + + +L C + +L GR VH+ I+Q+ D +
Sbjct: 3 EKDGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVN 62
Query: 257 ALIDMYSKCGSLEEALVTFYKTDC--KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
ALI+MY +CGS+EEA + K + V +W M+ G YG +AL++ QM++ G+
Sbjct: 63 ALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGL 122
Query: 315 KPNEATFVSVLAACRHSGLITEGCQL-FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
P+ T +S L++C+ G + G ++ F+ M + + C++++ ++ G + +A
Sbjct: 123 APDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVAN--CILNMYAKCGSIEEA 180
Query: 374 EEFIKIM 380
E M
Sbjct: 181 REVFDKM 187
>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 151/464 (32%), Positives = 248/464 (53%), Gaps = 31/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MGK +H K + S+++VG++L Y + DA +F++MP +D SW ++ Y+
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L+ FK++I E + D+ L AC L+ +G++VH K+G E +
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 243
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL MY+K +M+ A +F RN+VS LI+GY++ E
Sbjct: 244 VGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETE--------------- 288
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
Q E+ L +F ++ +G+ P+E S++ AC++ + L+ G +H
Sbjct: 289 ----------------QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLH 332
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ N +D FV + L+DMY KCG LE+A+ F + + W +++ +GLG
Sbjct: 333 AQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGK 392
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+A+++F +M +G+KPN TF+S+L C H+GL+ EG F M Y V P EH+ C+
Sbjct: 393 DAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCV 452
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLL RAG L +A+EFI MP E + + L AC + + ++GK A ++KL ++
Sbjct: 453 IDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNS 512
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
A VLLSN YA E W +V R M++ +K PG S +D+ +
Sbjct: 513 GALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGY 556
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 202/410 (49%), Gaps = 46/410 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LHA + ++ N L++ Y + A LFD MP R++ SW ++S +
Sbjct: 24 GKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQ 83
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E + F + G V + ACA L + GK +HC A K G+ L +
Sbjct: 84 NSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFV 143
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ L MY+KC M +A ++F+EM KD
Sbjct: 144 GSNLEDMYSKCGAMFDACKVFEEMPC--------------------------------KD 171
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G K + EEAL FKKMIDE VT D+ V+ S L AC +L ++GR VH
Sbjct: 172 EVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHS 231
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGN 300
+++ D FV AL DMYSK G +E A F ++C++VV++T +I+G
Sbjct: 232 SVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIE 291
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC- 359
+ L VF ++ R+GI+PNE TF S++ AC + + +G QL + V ++ + FV
Sbjct: 292 KGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQ---VMKINFDEDPFVSS 348
Query: 360 -LVDLLSRAGLLYQA-EEFIKIM-PAEDKFISYKALLSACITYSEFDLGK 406
LVD+ + GLL QA + F +I P E I++ +L+S + + LGK
Sbjct: 349 ILVDMYGKCGLLEQAIQAFDEIGDPTE---IAWNSLVS---VFGQHGLGK 392
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 154/345 (44%), Gaps = 39/345 (11%)
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL 139
++ D L + A+ ++L GK +H G + N L+ MY+KC E+D AL
Sbjct: 1 MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHAL 60
Query: 140 RLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
+L FD + +++V W +M+ G + +
Sbjct: 61 KL--------------------------------FDTMPQRNLVSWTAMISGLSQNSKFS 88
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
EA+ F M G P + S + AC+SL +++ G+ +H L+ I + FV + L
Sbjct: 89 EAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLE 148
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
DMYSKCG++ +A F + CKD V+WT MI+G + G EAL F +M + + ++
Sbjct: 149 DMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQH 208
Query: 320 TFVSVLAACRHSGLITEGCQLFRRM-GGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEF 376
S L AC G + + C+ R + V ++ + FV L D+ S+AG + A
Sbjct: 209 VLCSTLGAC---GAL-KACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNV 264
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
I +SY L+ + + + G V + + G + +E
Sbjct: 265 FGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNE 309
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 164/461 (35%), Positives = 250/461 (54%), Gaps = 2/461 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +HAHV K + + +V SL+ Y AR L + WN L+S +N
Sbjct: 63 RAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRC 122
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACAR-LEKLHYGKTVHCYATKVGLEYMLNM 121
GE F + G +T V + SAC + + G VH G+ L +
Sbjct: 123 RRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRV 182
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENAL+ MYA+C +M+ A +LFD M R++VS L++G + VD AR++F + ++D
Sbjct: 183 ENALVDMYAECADMESAWKLFDGM-QVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERD 241
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G V+A + EALE+F++M V+ DE MVSV++AC+ L L+ G V
Sbjct: 242 TVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRV 301
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ + I DAFV ALIDMYSKCGS+E AL F +D TWT +I GLA G G E
Sbjct: 302 YMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEE 361
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ +F++M P+E TF+ VL AC H+GL+ +G + F M Y + P + H+ C++
Sbjct: 362 AIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCII 421
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL RAG + +A + I MP + LL+AC + ++G+ V ++++ ++
Sbjct: 422 DLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENST 481
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y LLSN YA W +V R + E +K+PG S+I++
Sbjct: 482 VYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEM 522
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 147/365 (40%), Gaps = 79/365 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
+G +H V + + D+ V N+L+ Y A A LFD M R V SW +L+S
Sbjct: 163 LGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLT 222
Query: 58 ----------------------------IYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
Y + E L +F+++ + AD+ T+V
Sbjct: 223 RLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVS 282
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +ACA+L L G+ V Y ++ G++ + NAL+ MY+KC ++ AL +F +M R
Sbjct: 283 VITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHR- 341
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D W +++ G EEA+E+F +MI
Sbjct: 342 -------------------------------DKFTWTAIILGLAVNGYGEEAIEMFHRMI 370
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ----NNITQDAFVKTALIDMYSKC 265
TPDE + VL+AC+ + GR F L NI + +ID++ +
Sbjct: 371 GVSETPDEVTFIGVLTACTHAGLVDKGR---EFFLSMRETYNIAPNVVHYGCIIDLFGRA 427
Query: 266 GSLEEALVTFYKTD-CKDVVTWTTMIEGLANYG---LGNEALRVFYQMERKGIKPNEATF 321
G + EAL + + W T++ +G +G QM+ P +T
Sbjct: 428 GKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMD-----PENSTV 482
Query: 322 VSVLA 326
++L+
Sbjct: 483 YTLLS 487
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 129/310 (41%), Gaps = 46/310 (14%)
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
C+ A + E+A+ + +M+ G PD +L A + S+ R VH +++ + ++
Sbjct: 19 CLVAAR-EDAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRN 77
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
A V T+L+ Y+ G A + + V W +I G EA F M R
Sbjct: 78 AHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMAR 137
Query: 312 KGIKPNEATFVSVLAAC-RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL------- 363
G P T+VSVL+AC + +G + G Q+ R+ G V P + LVD+
Sbjct: 138 AGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVG-SGVLPDLRVENALVDMYAECADM 196
Query: 364 ------------------------LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
L+R G + +A + MP D +S+ A++ +
Sbjct: 197 ESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDT-VSWTAMIDGYVQA 255
Query: 400 SEFDLGKKVANNMMKLGNQSHEAYVLLS------NFYALE-GHWTEVAEARRNMKELQTR 452
+ F ++ M+ N S + + ++S ALE G W V +R+ +K
Sbjct: 256 ARFREALEMFRE-MQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIK---MD 311
Query: 453 KKPGNSIIDL 462
GN++ID+
Sbjct: 312 AFVGNALIDM 321
>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 687
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 163/464 (35%), Positives = 256/464 (55%), Gaps = 5/464 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H T+ + SD++VGN+LIH YG+ AR +FD + RDV SW +L S Y
Sbjct: 98 KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKC 157
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ + +F+++ + G+ + +T+ + ACA L+ L GK +H +A + G+ L +
Sbjct: 158 GFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVC 217
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI----V 178
+AL+ +YAKC + EA +FD M R++VS N ++ Y + + +F ++ V
Sbjct: 218 SALVSLYAKCLSVREARMVFDLM-PHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGV 276
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D W +++ GC++ + EEA+E+F+KM G P+E + S+L ACS NL+ G+
Sbjct: 277 RADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKE 336
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++ ++ D TAL+ MY+KCG L + F KDVV W TMI A +G
Sbjct: 337 IHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGN 396
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G EAL +F +M ++PN TF VL+ C HS L+ EG Q+F MG + V+P H+
Sbjct: 397 GKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYS 456
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VD+ SRAG L +A +FI+ MP E ++ ALL+AC Y +L K A + ++
Sbjct: 457 CVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPN 516
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ YV L N W+E ++ R MKE K PG S + +
Sbjct: 517 NPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQV 560
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 132/306 (43%), Gaps = 68/306 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
GK +H + + +++V ++L+ Y + +AR++FD MP RDV SWN +++ Y
Sbjct: 198 GKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFK 257
Query: 60 -----NDFS----------------------------DSGEVLILFKQLIFEGIVADKIT 86
FS S E + +F+++ G ++IT
Sbjct: 258 NKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEIT 317
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+ + AC+ E L GK +HCY + L ALL MYAKC +++ + +FD M
Sbjct: 318 ISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMM- 376
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
RR KD+V W +M+ +EAL LF
Sbjct: 377 -RR------------------------------KDVVAWNTMIIANAMHGNGKEALFLFD 405
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ-DAFVKTALIDMYSKC 265
KM+ V P+ VLS CS ++ G + + ++++ + DA + ++D+YS+
Sbjct: 406 KMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRA 465
Query: 266 GSLEEA 271
G L EA
Sbjct: 466 GRLNEA 471
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 116/255 (45%), Gaps = 6/255 (2%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
AR++FD I D +++ EA++++ + + G+ PD V ++ AC+
Sbjct: 31 ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAV 90
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+ + VH + + D FV ALI Y KC +E A F +DVV+WT++
Sbjct: 91 SGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL 150
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
G + + VF +M G+KPN T S+L AC + G ++ G R
Sbjct: 151 SSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIH---GFAVR 207
Query: 350 VQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
+ FVC LV L ++ + +A +MP D +S+ +L+A E++ G
Sbjct: 208 HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRD-VVSWNGVLTAYFKNKEYEKGFS 266
Query: 408 VANNMMKLGNQSHEA 422
+ M + G ++ EA
Sbjct: 267 LFLKMSRDGVRADEA 281
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 118/261 (45%), Gaps = 25/261 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MGK +H +V + D+ +L++ Y + +R +FD M +DV +WNT++ I N
Sbjct: 333 MGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMI-IAN 391
Query: 61 DFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+G E L LF +++ + + +T + S C+ + G + +G ++++
Sbjct: 392 AMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIF---NSMGRDHLV 448
Query: 120 ----NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLARE 172
N + ++ +Y++ ++EA + M + L+ Y ++EL ++ +
Sbjct: 449 EPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAK 508
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
EI + + S+ + V AK EA ++ M + G+T CS
Sbjct: 509 KLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITK--------TPGCSW--- 557
Query: 233 LQYGRLVHRFIL--QNNITQD 251
LQ G VH F++ ++NI D
Sbjct: 558 LQVGNKVHTFVVGDKSNIESD 578
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LI + G A F D T +T+I L +GL NEA++++ ++ +GIKP+
Sbjct: 18 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77
Query: 318 EATFVSVLAACRHSG 332
F++ AC SG
Sbjct: 78 MPVFLAAAKACAVSG 92
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 164/429 (38%), Positives = 244/429 (56%), Gaps = 5/429 (1%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLIL-FKQLIFEGIVADKITLVILFSACA 95
A+ +F+ + + WN ++ Y++ SD E+ L ++Q++ + + T L AC
Sbjct: 41 AQRVFNGITSPNTFMWNAIIRAYSN-SDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACR 99
Query: 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLN 155
L + VH K+G + NALL +YA C E+ A +LFD + R+ VS N
Sbjct: 100 NLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNI-PERDAVSWN 158
Query: 156 ILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215
I+I+GYI V A VF ++ K++V W S++ G V+A Q EAL L +M + G
Sbjct: 159 IMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFEL 218
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
D + S+L+AC++L L GR +H ++L N + D + AL++MY KCG +EEAL F
Sbjct: 219 DGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVF 278
Query: 276 --YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
K + KDV WT MI+G A +G G EAL F +M R+GI+PN TF +VL AC + GL
Sbjct: 279 GKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGL 338
Query: 334 ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
+ EG +LF+ M Y V P+IEH+ C+VDLL R+G L +A+E IK MP + + + ALL
Sbjct: 339 VEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALL 398
Query: 394 SACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRK 453
AC + +F LG +V +++++ + Y+ L+ A EG W E AE R MK L
Sbjct: 399 KACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPI 458
Query: 454 KPGNSIIDL 462
PG S + L
Sbjct: 459 SPGKSSVTL 467
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 129/327 (39%), Gaps = 65/327 (19%)
Query: 1 MGKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
MG+ L H V K SD++ N+L+H Y AR LFD +P RD SWN ++
Sbjct: 104 MGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDG 163
Query: 59 YNDFSD-------------------------------SGEVLILFKQLIFEGIVADKITL 87
Y D S E L L ++ G D + +
Sbjct: 164 YIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAI 223
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
L +ACA L L G+ +H Y G++ + AL+ MY KC +M+EAL +F ++
Sbjct: 224 ASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKG 283
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
+ KD+ +W +M+ G + EALE F +
Sbjct: 284 NQ------------------------------KDVYIWTAMIDGFAIHGRGVEALEWFNR 313
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCG 266
M EG+ P+ +VL ACS ++ G+ L N+ ++D+ + G
Sbjct: 314 MRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSG 373
Query: 267 SLEEALVTFYKTDCK-DVVTWTTMIEG 292
L+EA K K V W +++
Sbjct: 374 RLDEAKELIKKMPMKPSAVIWGALLKA 400
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 172/478 (35%), Positives = 252/478 (52%), Gaps = 54/478 (11%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIY--NDFSDSGEVLILFKQLIFEGIVADKITLVILFSAC 94
A LFDK+ RDV SWN+++S Y N ++ G L ++KQ+++ GI D T++ + C
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERG--LEIYKQMMYLGIDVDLATIISVLVGC 261
Query: 95 ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSL 154
A L GK VH A K E +N N LL MY+KC ++D ALR+F++MG RN+VS
Sbjct: 262 ANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSW 320
Query: 155 NILINGYIDMELVD----LAREVFDEIVDKDIVLWRSMMHGC---------------VKA 195
+I GY D L +++ E V D+V S++H C +KA
Sbjct: 321 TSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKA 380
Query: 196 KQPEEAL--------------------ELFKKMIDEGV----------TPDEEVMVSVLS 225
E L +F M+ + + PD M +L
Sbjct: 381 NNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILP 440
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
AC+SLS L+ G+ +H +IL+N + D V AL+D+Y KCG L A + F KD+V+
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 500
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
WT MI G +G GNEA+ F +M GI+P+E +F+S+L AC HSGL+ +G + F M
Sbjct: 501 WTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560
Query: 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
+ ++P +EH+ C+VDLLSR G L +A EFI+ +P + ALL C Y + +L
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELA 620
Query: 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+KVA + +L ++ YVLL+N YA W EV R + + RK PG S I++K
Sbjct: 621 EKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIK 678
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 104/366 (28%), Positives = 178/366 (48%), Gaps = 49/366 (13%)
Query: 94 CARLEKLHYGKTVHCY--ATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNI 151
CA + L GK VH + V ++ +L ++ L+ +YA C ++ E R+FD M ++N+
Sbjct: 109 CAGSKSLTDGKKVHSIIKSNNVAVDEVLGLK--LVSLYATCGDLKEGRRVFDTM-EKKNV 165
Query: 152 VSLNILINGY--------------------IDMELVDLAREVFDEIVDKDIVLWRSMMHG 191
N +++ Y I+ + + A E+FD++ D+D++ W SM+ G
Sbjct: 166 YLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISG 225
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
V E LE++K+M+ G+ D ++SVL C++ L G+ VH +++ +
Sbjct: 226 YVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERR 285
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
L+DMYSKCG L+ AL F K ++VV+WT+MI G G + A+R+ QME+
Sbjct: 286 INFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEK 345
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH--FVC--LVDLLSRA 367
+G+K + S+L AC SG + G + Y +E FVC L+D+ ++
Sbjct: 346 EGVKLDVVATTSILHACARSGSLDNGKDVHD-----YIKANNMESNLFVCNALMDMYTKC 400
Query: 368 GLLYQAEEFIKIMPAEDKFISYKAL--------------LSACITYSEFDLGKKVANNMM 413
G + A M +D IS+ + L AC + S + GK++ ++
Sbjct: 401 GSMDGANSVFSTMVVKD-IISWNTMIGELKPDSRTMACILPACASLSALERGKEIHGYIL 459
Query: 414 KLGNQS 419
+ G S
Sbjct: 460 RNGYSS 465
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 153/349 (43%), Gaps = 56/349 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H+ K+ + I N+L+ Y + A +F+KM R+V SW ++++ Y
Sbjct: 269 LGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 328
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S + L +Q+ EG+ D + + ACAR L GK VH Y +E L
Sbjct: 329 RDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLF 388
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI---------------------- 158
+ NAL+ MY KC MD A +F M ++I+S N +I
Sbjct: 389 VCNALMDMYTKCGSMDGANSVFSTM-VVKDIISWNTMIGELKPDSRTMACILPACASLSA 447
Query: 159 -------------NGY-----IDMELVD---------LAREVFDEIVDKDIVLWRSMMHG 191
NGY + LVD LAR +FD I KD+V W M+ G
Sbjct: 448 LERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISG 507
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
EA+ F +M D G+ PDE +S+L ACS L+ G +I++N+ +
Sbjct: 508 YGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNIE 566
Query: 252 AFVK--TALIDMYSKCGSLEEALVTFYKT--DCKDVVTWTTMIEGLANY 296
++ ++D+ S+ G+L +A F +T D W ++ G Y
Sbjct: 567 PKLEHYACMVDLLSRTGNLSKAY-EFIETLPIAPDATIWGALLCGCRIY 614
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 53/246 (21%)
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK 281
SVL C+ +L G+ VH I NN+ D + L+ +Y+ CG L+E F + K
Sbjct: 104 SVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKK 163
Query: 282 D---------------------------------------------------VVTWTTMI 290
+ V++W +MI
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMI 223
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
G + GL L ++ QM GI + AT +SVL C +SG ++ G + +
Sbjct: 224 SGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSTF 282
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
+ I L+D+ S+ G L A + M E +S+ ++++ D ++
Sbjct: 283 ERRINFSNTLLDMYSKCGDLDGALRVFEKM-GERNVVSWTSMIAGYTRDGRSDGAIRLLQ 341
Query: 411 NMMKLG 416
M K G
Sbjct: 342 QMEKEG 347
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/460 (34%), Positives = 257/460 (55%), Gaps = 33/460 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+AH+ K LD D +V NSL+ + +R LF + +DV SW L++
Sbjct: 125 FYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGR 184
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLNMEN 123
+ E L F ++ G+ D++T+V + A A L + +G+ VH + + G + + + + +
Sbjct: 185 AVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGS 244
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ MY+KC D+A++ VF+E+ +++V
Sbjct: 245 ALVDMYSKCGYCDDAVK--------------------------------VFNEMPTRNLV 272
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W +++ G V+ + +EAL++F++MI EG+ P++ + S L+AC+ L +L GR +H ++
Sbjct: 273 SWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYV 332
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++ + ++ + TAL+DMYSKCG ++EAL+ F K KDV WT MI GLA G +L
Sbjct: 333 DRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSL 392
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
+F QM R ++PN TF+ VL+AC H GL+ EG +LFR M YR++P ++H+ C+VDL
Sbjct: 393 NLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDL 452
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L RAG L +A +FI+ MP E + AL S C+ + F+LG+ + N+++KL Y
Sbjct: 453 LGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRY 512
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+LL+N Y+ W A RR MK K PG S I++
Sbjct: 513 ILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVN 552
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 182/349 (52%), Gaps = 35/349 (10%)
Query: 39 VLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE 98
+LFD++ + WNT++ ++ S VL+ + +L G++ D+ T +L A ++L
Sbjct: 59 LLFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLR 118
Query: 99 KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
+ + + + K GL++ ++N+L+ +A C +D + RLF E +++++VS
Sbjct: 119 NENPFQ-FYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIET-AKKDVVS----- 171
Query: 159 NGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE 218
W ++++GC++ + EALE F +M GV DE
Sbjct: 172 --------------------------WTALINGCLRNGRAVEALECFVEMRSSGVEVDEV 205
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNN-ITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
+VSVL A + L ++ +GR VH F +++ + D +V +AL+DMYSKCG ++A+ F +
Sbjct: 206 TIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNE 265
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+++V+W +I G EAL+VF +M +GI+PN++T S L AC G + +G
Sbjct: 266 MPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQG 325
Query: 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
L + ++ + LVD+ S+ G + +A + +PA+D +
Sbjct: 326 RWLHEYVDRS-KLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVY 373
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 122/256 (47%), Gaps = 10/256 (3%)
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
+FD + I LW +++ G + QP+ L + ++ + GV PD +L A S L N
Sbjct: 60 LFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
+ + I++ + DAFV+ +L+ ++ CG ++ + F +T KDVV+WT +I G
Sbjct: 120 ENPFQF-YAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY---- 348
G EAL F +M G++ +E T VSVL A + R + G Y
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCA----AAMLRDVWFGRWVHGFYVESG 234
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
RV + LVD+ S+ G A + MP + +S+ AL++ + + + KV
Sbjct: 235 RVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRN-LVSWGALIAGYVQCNRYKEALKV 293
Query: 409 ANNMMKLGNQSHEAYV 424
M+ G + +++ V
Sbjct: 294 FQEMIIEGIEPNQSTV 309
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 51/94 (54%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH +V ++ L + +G +L+ Y + +A ++F+K+P +DV W +++
Sbjct: 325 GRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAM 384
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
D+ L LF Q+I + + +T + + SACA
Sbjct: 385 RGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACA 418
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 265/464 (57%), Gaps = 5/464 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF----YGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
K +HA++ +T + D++ + LI F +L A +F ++ ++ +N ++
Sbjct: 34 KIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRG 93
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
++ + + + Q +G++ D +T L +C +L + G H + K G E
Sbjct: 94 HSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKD 153
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ ++N+L+ MYA + + A +F M ++VS +I G+ V+ AR++FD++
Sbjct: 154 VYVQNSLVHMYATFGDTEAATLIFQRM-YYVDVVSWTSMIRGFNKCGDVESARKLFDQMP 212
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+K++V W +M+ G + ++A+ELFK + +GV +E VMVSV+S+C+ L L+ G
Sbjct: 213 EKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGER 272
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
H ++++N +T + + TAL+DMY++CGS+++A+ F +D ++WT +I GLA +G
Sbjct: 273 AHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGY 332
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
+L+ F M G+ P + TF +VL+AC H GL+ G Q+F M +RV+P +EH+
Sbjct: 333 SERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYG 392
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDLL RAG L +AE F+ MP + + ALL AC + ++G++V +++L Q
Sbjct: 393 CMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQ 452
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA W +V E R+ MK +K PG+S+I+L
Sbjct: 453 HSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIEL 496
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 105/427 (24%), Positives = 179/427 (41%), Gaps = 124/427 (29%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD------------------------ 36
MG H H+ K + D+YV NSL+H Y A F D
Sbjct: 137 MGSQAHGHIIKHGFEKDVYVQNSLVHMY---ATFGDTEAATLIFQRMYYVDVVSWTSMIR 193
Query: 37 ----------ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKIT 86
AR LFD+MP +++ +W+T++S Y + + + LFK L +G+ A++
Sbjct: 194 GFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETV 253
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+V + S+CA L L G+ H Y K G+ L + AL+ MYA+C +D+A+ +F+++
Sbjct: 254 MVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLP 313
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
R D + W +++ G E +L+ F
Sbjct: 314 ER--------------------------------DTLSWTALIAGLAMHGYSERSLKYFA 341
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR-FILQNNITQDAFVKTAL------I 259
M++ G+TP + +VLSACS +G LV R F + ++ +D V+ L +
Sbjct: 342 TMVEAGLTPRDITFTAVLSACS------HGGLVERGFQIFESMKRDHRVEPRLEHYGCMV 395
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
D+ + G LE EA R +M +KPN
Sbjct: 396 DLLGRAGKLE-------------------------------EAERFVLKMP---VKPNAP 421
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH---FVCLVDLLSRAGLLYQAEEF 376
+ ++L ACR I + ++ R+G + +Q +H +V L ++ + A + E
Sbjct: 422 VWGALLGACR----IHKNAEIGERVGKIL-IQLLPQHSGYYVLLSNIYANAKEWEKVTEM 476
Query: 377 IKIMPAE 383
++M A+
Sbjct: 477 RQMMKAK 483
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI----DMYSKCGSLEEALVTFYKTD 279
L CS L++L +++H ++++ +I D F + LI D S ++ A F +
Sbjct: 24 LETCSDLTHL---KIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQ 80
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339
++ + MI G + ++A + Q +R+G+ P+ TF ++ +C I+ G Q
Sbjct: 81 NPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQ 140
>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
Length = 687
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 168/534 (31%), Positives = 271/534 (50%), Gaps = 71/534 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+ V ++ D++V +L++ Y + TDAR +FD MP R VG+WN+++S Y+
Sbjct: 29 GKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSI 88
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML-- 119
SGE +F+++ EG D++T + + AC E L +GK V ++ E L
Sbjct: 89 SERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFV 148
Query: 120 ------------NMENA-----------------LLLMYAKCKEMDEALRLFDEM----- 145
+ ENA ++ +A EALR F M
Sbjct: 149 GTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGI 208
Query: 146 -GSRRNIVSL--------------------------------NILINGYIDMEL--VDLA 170
+R +SL N L+N Y E +D+A
Sbjct: 209 LPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVA 268
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230
+ E+ ++ I W +++G + EALE ++++ E + D+ +SVL+AC+S
Sbjct: 269 EVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSS 328
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
++L G+++H ++ + D VK AL +MYSKCGS+E A F + V+W M+
Sbjct: 329 TSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGML 388
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
+ A +G E L++ +ME++G+K N TFVSVL++C H+GLI EGCQ F +G +
Sbjct: 389 QAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGI 448
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
+ EH+ CLVDLL RAG L +AE++I MP+E + +++ +LL AC + + D GK A
Sbjct: 449 EVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAAR 508
Query: 411 NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+++L + A V+LSN Y+ G W A+ RR M + +K PG S I +K+
Sbjct: 509 KLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKN 562
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%)
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M+ EGV + ++VL++ L+ G+ +H + ++ + D FV TAL++ Y+KCGS
Sbjct: 1 MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
L +A F C+ V TW +MI + EA +F +M+ +G + + TF+S+L A
Sbjct: 61 LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120
Query: 328 C 328
C
Sbjct: 121 C 121
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 168/497 (33%), Positives = 260/497 (52%), Gaps = 70/497 (14%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ +H HV + SD++V NSLI Y + AR +D M FRD SWN+++S Y
Sbjct: 112 GEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQ 171
Query: 60 ---------------------------NDFSDSG---EVLILFKQLIFEG--IVADKITL 87
N + G E+L LF+Q++ + + T+
Sbjct: 172 WGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATM 231
Query: 88 VILFSACARLEKLHYGK--TVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
V L SAC+ L G+ +V K+ L +L AL+ MY+KC ++++A R
Sbjct: 232 VCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTIL--VTALIDMYSKCGDVEKAWR----- 284
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
+FD + K++ W +++ GCV+ EEA++L+
Sbjct: 285 ---------------------------IFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLY 317
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+ M + V P+E +V+VLSAC+ L L+ GR VH ++ +N + + + TAL+DMY+KC
Sbjct: 318 RHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKC 377
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G +++A + F KT KDV W MI GLA +G G ++L VF QM R G++PN+ TF+ VL
Sbjct: 378 GKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVL 437
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+AC HSGL+ EG F M + + P +EH+ C+VDLL RAG L +A E ++ M
Sbjct: 438 SACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPD 497
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
I + ALLSAC + +L K++ +M + + +LLSN YA G W +VA RR
Sbjct: 498 SIIWGALLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSGRWKDVARVRRQ 557
Query: 446 MKELQTRKKPGNSIIDL 462
+KE + +K G S +++
Sbjct: 558 VKEKRIKKPSGCSWVEV 574
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 173/313 (55%), Gaps = 6/313 (1%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR + D+ P SWN+L+ Y L L+ +++ T + AC+
Sbjct: 46 ARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACST 105
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
L + G+ +H + ++G L + N+L+ MY KC +D A +D+MG R VS N
Sbjct: 106 LGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDE-VSWNS 164
Query: 157 LINGYIDMELVDLAREVFDEI-VDKDIVLWRSMMHGCVKAKQPEEALELFKKMI---DEG 212
+I+GY+ V+ AR++F+E+ + +++V W +M++G K E L LF++M+ DE
Sbjct: 165 IISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADE- 223
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
V P+ MV +LSACS+L N + GR + FI N I + + TALIDMYSKCG +E+A
Sbjct: 224 VQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAW 283
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F CK++ +W +I G GL EA+ ++ M+ + +KPNE T V+VL+AC G
Sbjct: 284 RIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLG 343
Query: 333 LITEGCQLFRRMG 345
+ G ++ +G
Sbjct: 344 ALELGREVHLYLG 356
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 5/242 (2%)
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
LI ID+ +D AR V D+ W S++ P+ +L L+ KM+ P
Sbjct: 33 LIPKLIDLHSIDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPS 92
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
VL ACS+L ++ G +H +L+ D FV +LIDMY KC L+ A +
Sbjct: 93 NFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWD 152
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
+D V+W ++I G +G +A +F +M ++ N + +++ G E
Sbjct: 153 DMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMP---MRRNVVCWTAMINGYGKEGDFVE 209
Query: 337 GCQLFRRM-GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
LFR+M VQP VCL+ S Y+ F+ + +K L++A
Sbjct: 210 MLSLFRQMLVSADEVQPNAATMVCLLSACSTL-CNYEVGRFLSVFIDVNKIPLNTILVTA 268
Query: 396 CI 397
I
Sbjct: 269 LI 270
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 101/230 (43%), Gaps = 15/230 (6%)
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
+++S+L +SL+ + +H L + + + LID++S ++ A +T
Sbjct: 1 MLLSLLRTATSLTQIHQ---IHAQTLIHGLPLQTHLIPKLIDLHS----IDYARFVLDQT 53
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338
+W ++I +G +L ++ +M R KP+ TF VL AC G + EG
Sbjct: 54 PSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGE 113
Query: 339 QLFRRMGGVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
Q+ V R+ + FVC L+D+ + L A F M D+ +S+ +++S
Sbjct: 114 QIHTH---VLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDE-VSWNSIISGY 169
Query: 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
+ + + + + + M N + + N Y EG + E+ R M
Sbjct: 170 VQWGQVEKARDLFEEMPMRRNVV--CWTAMINGYGKEGDFVEMLSLFRQM 217
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 1/146 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H ++ + LD ++ + +L+ Y + DA ++F K +DV WN ++
Sbjct: 347 LGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLA 406
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-VHCYATKVGLEYML 119
D + L +F Q++ G+ + +T + + SAC + G+ A K GL L
Sbjct: 407 YHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKL 466
Query: 120 NMENALLLMYAKCKEMDEALRLFDEM 145
++ + + + EA L M
Sbjct: 467 EHYACMVDLLGRAGHLKEAYELVQNM 492
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 171/463 (36%), Positives = 245/463 (52%), Gaps = 38/463 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H VTK DIYV NSL+HFYG +A +FD+MP RDV SW +++ +
Sbjct: 125 GKQIHGTVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFTR 184
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L F ++ E +A T V + R+ L GK +H K L
Sbjct: 185 TGLYKEALDTFSKMDVEPNLA---TYVCALVSSGRVGCLSLGKGIHGLILKRASLISLET 241
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC+++ + A VF E+ KD
Sbjct: 242 GNALIDMYVKCEQLSD--------------------------------AMTVFGELQKKD 269
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
V W SM+ G V ++ EA+ELF M G+ PD ++ SVLSAC+SL + YGR VH
Sbjct: 270 KVSWNSMISGLVHCERSNEAIELFSMMQTSSGIKPDGHILTSVLSACASLGAVDYGRWVH 329
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++L I D + TA++DMY+KCG +E AL F K+V TW ++ GLA +G G+
Sbjct: 330 EYVLSAGIKWDTHIGTAIVDMYAKCGYIETALKIFNGIRRKNVFTWNALLGGLAIHGHGH 389
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV-YRVQPTIEHFVC 359
E+LR F +M + G KPN TF+++L AC H+GL+ EG + F +M Y + P +EH+ C
Sbjct: 390 ESLRYFEEMVKLGFKPNLVTFLAILNACCHTGLVDEGRRYFHKMKTREYNLSPKLEHYGC 449
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF-DLGKKVANNMMKLGNQ 418
L+DL RAGLL +A E IK MP + A+LSAC + +L K++ ++ +++ +
Sbjct: 450 LIDLFCRAGLLDEALELIKAMPVKPDVRICGAVLSACKSRGTLMELPKEILDSFLEMEFE 509
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YVLLSN +A W +V+ RR MK K PG+S I+
Sbjct: 510 DSGVYVLLSNIFAANRRWDDVSRIRRLMKVKGISKVPGSSSIE 552
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 142/318 (44%), Gaps = 40/318 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GKG+H + K A + GN+LI Y + +DA +F ++ +D SWN+++S
Sbjct: 222 LGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMTVFGELQKKDKVSWNSMISGLV 281
Query: 61 DFSDSGEVLILFKQL-IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
S E + LF + GI D L + SACA L + YG+ VH Y G+++
Sbjct: 282 HCERSNEAIELFSMMQTSSGIKPDGHILTSVLSACASLGAVDYGRWVHEYVLSAGIKWDT 341
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ A++ MYAKC ++ AL++F+ G RR
Sbjct: 342 HIGTAIVDMYAKCGYIETALKIFN--GIRR------------------------------ 369
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RL 238
K++ W +++ G E+L F++M+ G P+ +++L+AC + G R
Sbjct: 370 KNVFTWNALLGGLAIHGHGHESLRYFEEMVKLGFKPNLVTFLAILNACCHTGLVDEGRRY 429
Query: 239 VHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANY 296
H+ + N++ LID++ + G L+EAL K DV ++ +
Sbjct: 430 FHKMKTREYNLSPKLEHYGCLIDLFCRAGLLDEALELIKAMPVKPDVRICGAVLSACKSR 489
Query: 297 G----LGNEALRVFYQME 310
G L E L F +ME
Sbjct: 490 GTLMELPKEILDSFLEME 507
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
+P + +++ + G +PD V AC S ++ G+ +H + + D +V+
Sbjct: 86 KPRMTIFVYRVFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGTVTKMGFYDDIYVQN 145
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
+L+ Y CG A F + +DVV+WT +I G GL EAL F +M+ ++P
Sbjct: 146 SLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMD---VEP 202
Query: 317 NEATFVSVLAACRHSGLITEG 337
N AT+V L + G ++ G
Sbjct: 203 NLATYVCALVSSGRVGCLSLG 223
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 159/462 (34%), Positives = 260/462 (56%), Gaps = 1/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + + + L+ + + N+L+ Y + AR +FD+ +++ +NT+MS Y
Sbjct: 258 LGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYV 317
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ EVL + +++ G D+IT++ SAC+ L+ + GK H Y + GLE N
Sbjct: 318 RQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDN 377
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NA++ MY KC + + A R+FD M ++ VS N LI G++ ++ A ++F + D
Sbjct: 378 VCNAIINMYMKCGKQEMACRVFDRMLNKTR-VSWNSLIAGFVRNGDMESAWKIFSAMPDS 436
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ V+ +EA+ELF+ M EG+T D+ MV V SAC L L + +H
Sbjct: 437 DLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIH 496
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I + +I D + TAL+DM+++CG + A+ F K +DV WT I +A G G
Sbjct: 497 GYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGT 556
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ +F +M ++GIKP+ FV++L A H GL+ +G +FR M +Y + P H+ C+
Sbjct: 557 GAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCM 616
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A I M E + + +LL+AC + D+ A + +L +
Sbjct: 617 VDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERT 676
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+VLLSN YA G W +VA+ R ++KE K PG+S I++
Sbjct: 677 GIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEI 718
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 120/419 (28%), Positives = 187/419 (44%), Gaps = 74/419 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + K + D++V NSLIHFYG R +FDKM R+V SW +L+ Y
Sbjct: 158 GFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAK 217
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + LF +++ GI + +T+V + SACA+L+ L G+ V ++ LE M
Sbjct: 218 RGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALM 277
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC +D+A ++FDE VDK+
Sbjct: 278 VNALVDMYMKCGAIDKARKIFDE--------------------------------CVDKN 305
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+VL+ ++M V+ E L + +M+ G PD M+S +SACS L ++ G+ H
Sbjct: 306 LVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHG 365
Query: 242 FILQNNITQDAFVKTALIDMYSKC-------------------------------GSLEE 270
++L+N + V A+I+MY KC G +E
Sbjct: 366 YVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMES 425
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F D+V+W TMI L + EA+ +F M+ +GI ++ T V V +AC +
Sbjct: 426 AWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGY 485
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHF-----VCLVDLLSRAGLLYQAEEFIKIMPAED 384
G + L + + G + + HF LVD+ +R G A + M D
Sbjct: 486 LGAL----DLAKWIHGYIKKKDI--HFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRD 538
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 112/211 (53%), Gaps = 11/211 (5%)
Query: 129 YAKCKEMDEALRLFDEM---GSRRNIVSLNILINGYIDM---ELVDLAREVFDEIVDKDI 182
+ KCK M E +L ++ G + +SL LI+ +M E ++ A++ + ++ +
Sbjct: 40 FKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNG 99
Query: 183 VL-----WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
++ + S++ G +A+ +F++++ G PD VLSAC+ + L G
Sbjct: 100 IMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGF 159
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH I++ +D FV+ +LI Y +CG ++ F K ++VV+WT++I G A G
Sbjct: 160 QVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRG 219
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
EA+ +F++M GI+PN T V V++AC
Sbjct: 220 CYKEAVSLFFEMVEVGIRPNSVTMVGVISAC 250
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/425 (35%), Positives = 245/425 (57%), Gaps = 4/425 (0%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99
+F ++P + +WN+++ ++ + + +F +++ G+ D +T + A ARL +
Sbjct: 68 IFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIAKAVARLSE 127
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
L VHC K GL + + N+L+ MY C ++ A ++FDEM RN VS N +++
Sbjct: 128 LRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEM-LIRNSVSWNAMLD 186
Query: 160 GYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
GY +D AR+VF+ + D+D+V W SM+ GCVK + AL +F++M G +E
Sbjct: 187 GYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANEVT 246
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF--YK 277
MVSVL AC+ L L+ GR +H++++ N + ++T+L+DMY+KCG++EEA+ F
Sbjct: 247 MVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVP 306
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
D DV+ W T+I GLA +GL +E+L +F +M+ GI P+E T++ + +AC H GL+ E
Sbjct: 307 MDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDEITYLCLFSACAHGGLVHEA 366
Query: 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
F+ +G V P EH+ C+VD+LSRAG L +A +FI MP E ALL+ C+
Sbjct: 367 WHFFKSLGKQGMV-PKSEHYACMVDVLSRAGQLAEAYDFIAQMPMEPTASMLGALLNGCM 425
Query: 398 TYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGN 457
+ FDL ++V +++L Y+ LSN YA W R M+ +K PG
Sbjct: 426 NHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNARMMREAMERRGVKKSPGF 485
Query: 458 SIIDL 462
S +++
Sbjct: 486 SFVEV 490
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 129/305 (42%), Gaps = 73/305 (23%)
Query: 4 GLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFS 63
+H + K L D ++ NSLIH YG AR +FD+M R+ SWN ++ Y
Sbjct: 133 AVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCG 192
Query: 64 D-------------------------------SGEVLILFKQLIFEGIVADKITLVILFS 92
D G L +F+++ G A+++T+V +
Sbjct: 193 DLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLC 252
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
ACA L L G+T+H Y + + L + +L+ MYAKC ++EA+ +F R +
Sbjct: 253 ACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVF------RGV- 305
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
+ D+++W +++ G E+LELFK+M G
Sbjct: 306 -----------------------PMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLG 342
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVH------RFILQNNITQDAFVKTALIDMYSKCG 266
+ PDE + + SAC+ +G LVH + + + + + ++D+ S+ G
Sbjct: 343 IVPDEITYLCLFSACA------HGGLVHEAWHFFKSLGKQGMVPKSEHYACMVDVLSRAG 396
Query: 267 SLEEA 271
L EA
Sbjct: 397 QLAEA 401
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 110/252 (43%), Gaps = 40/252 (15%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
+D + +F +I I W S++ G K K P ++ +F KM+ GV PD + A
Sbjct: 62 IDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIAKA 121
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS----------------------- 263
+ LS L+ VH I + + D F+ +LI MY
Sbjct: 122 VARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSW 181
Query: 264 --------KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
KCG L+ A F +DVV+W++MI+G G AL +F +M G K
Sbjct: 182 NAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPK 241
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLY 371
NE T VSVL AC H G + +G + + Y V T+ + L+D+ ++ G +
Sbjct: 242 ANEVTMVSVLCACAHLGALEQGRTMHQ-----YMVDNTMRFTLVLRTSLMDMYAKCGAIE 296
Query: 372 QAEEFIKIMPAE 383
+A + +P +
Sbjct: 297 EAIAVFRGVPMD 308
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 170/475 (35%), Positives = 249/475 (52%), Gaps = 54/475 (11%)
Query: 40 LFDKMPFRDVGSWNTLMSIY--NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL 97
LFDK+ RDV SWN+++S Y N ++ G L ++KQ+++ GI D T++ + CA
Sbjct: 207 LFDKLCDRDVISWNSMISGYVSNGLTERG--LGIYKQMMYLGIDVDLATIISVLVGCANS 264
Query: 98 EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNIL 157
L GK VH A K E +N N LL MY+KC ++D ALR+F++MG RN+VS +
Sbjct: 265 GTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSM 323
Query: 158 INGYIDMELVD----LAREVFDEIVDKDIVLWRSMMHGCV-------------------- 193
I GY D L +++ E V D+V S++H C
Sbjct: 324 IAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383
Query: 194 ---------------KAKQPEEALELFKKMIDEGV----------TPDEEVMVSVLSACS 228
K E A +F M+ + + PD M VL AC+
Sbjct: 384 ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACA 443
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
SLS L+ G+ +H +IL+N + D V AL+D+Y KCG L A + F KD+V+WT
Sbjct: 444 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
MI G +G GNEA+ F +M GI+P+E +F+S+L AC HSGL+ +G + F M +
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDF 563
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
++P +EH+ C+VDLLSR G L +A EF++ +P + ALL C Y + +L +KV
Sbjct: 564 NIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKV 623
Query: 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A + +L ++ YVLL+N YA W EV R + + RK PG S I++K
Sbjct: 624 AERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIK 678
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 177/366 (48%), Gaps = 49/366 (13%)
Query: 94 CARLEKLHYGKTVHCY--ATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNI 151
CA L+ GK VH + VG++ L ++ L+ YA C ++ E R+FD M ++N+
Sbjct: 109 CAGLKSFTDGKKVHSIIKSNSVGVDGALGLK--LVSFYATCGDLKEGRRVFDTM-EKKNV 165
Query: 152 VSLNILINGY--------------------IDMELVDLAREVFDEIVDKDIVLWRSMMHG 191
N +++ Y I+ + + A E+FD++ D+D++ W SM+ G
Sbjct: 166 YLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISG 225
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
V E L ++K+M+ G+ D ++SVL C++ L G+ VH ++++ +
Sbjct: 226 YVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERR 285
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
L+DMYSKCG L+ AL F K ++VV+WT+MI G G + A+++ QME+
Sbjct: 286 INFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEK 345
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH--FVC--LVDLLSRA 367
+G+K + S+L AC SG + G + Y +E FVC L+D+ ++
Sbjct: 346 EGVKLDVVAITSILHACARSGSLDNGKDVHD-----YIKANNMESNLFVCNALMDMYAKC 400
Query: 368 GLLYQAEEFIKIMPAEDKFISYKAL--------------LSACITYSEFDLGKKVANNMM 413
G + A M +D IS+ + L AC + S + GK++ ++
Sbjct: 401 GSMEAANSVFSTMVVKD-IISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYIL 459
Query: 414 KLGNQS 419
+ G S
Sbjct: 460 RNGYSS 465
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 53/246 (21%)
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA---------- 271
SVL C+ L + G+ VH I N++ D + L+ Y+ CG L+E
Sbjct: 104 SVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKK 163
Query: 272 --------------LVTFYKTDC---------------------------KDVVTWTTMI 290
+ F ++ C +DV++W +MI
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMI 223
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
G + GL L ++ QM GI + AT +SVL C +SG ++ G + +
Sbjct: 224 SGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSSF 282
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
+ I L+D+ S+ G L A + M E +S+ ++++ D K+
Sbjct: 283 ERRINFSNTLLDMYSKCGDLDGALRVFEKM-GERNVVSWTSMIAGYTRDGRSDGAIKLLQ 341
Query: 411 NMMKLG 416
M K G
Sbjct: 342 QMEKEG 347
>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 865
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/464 (35%), Positives = 256/464 (55%), Gaps = 5/464 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H T+ + SD++VGN+LIH YG+ AR +FD + RDV SW +L S Y
Sbjct: 184 KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKC 243
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ + +F+++ + G+ + +T+ + ACA L+ L GK +H +A + G+ L +
Sbjct: 244 GFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVC 303
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI----V 178
+AL+ +YAKC + EA +FD M R++VS N ++ Y + + +F ++ V
Sbjct: 304 SALVSLYAKCLSVREARMVFDLM-PHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGV 362
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D W +++ GC++ + EEA+E+F+KM G P+E + S+L ACS NL+ G+
Sbjct: 363 RADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKE 422
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++ ++ D TAL+ MY+KCG L + F KDVV W TMI A +G
Sbjct: 423 IHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGN 482
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G EAL +F +M ++PN TF VL+ C HS L+ EG Q+F MG + V+P H+
Sbjct: 483 GKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYS 542
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VD+ SRAG L +A +FI+ MP E ++ ALL+AC Y +L K A + ++
Sbjct: 543 CVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPN 602
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ YV L N W+E ++ R MKE K PG S + +
Sbjct: 603 NPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQV 646
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 132/306 (43%), Gaps = 68/306 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
GK +H + + +++V ++L+ Y + +AR++FD MP RDV SWN +++ Y
Sbjct: 284 GKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFK 343
Query: 60 -----NDFS----------------------------DSGEVLILFKQLIFEGIVADKIT 86
FS S E + +F+++ G ++IT
Sbjct: 344 NKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEIT 403
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+ + AC+ E L GK +HCY + L ALL MYAKC +++ + +FD M
Sbjct: 404 ISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMM- 462
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
RR KD+V W +M+ +EAL LF
Sbjct: 463 -RR------------------------------KDVVAWNTMIIANAMHGNGKEALFLFD 491
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ-DAFVKTALIDMYSKC 265
KM+ V P+ VLS CS ++ G + + ++++ + DA + ++D+YS+
Sbjct: 492 KMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRA 551
Query: 266 GSLEEA 271
G L EA
Sbjct: 552 GRLNEA 557
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 116/255 (45%), Gaps = 6/255 (2%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
AR++FD I D +++ EA++++ + + G+ PD V ++ AC+
Sbjct: 117 ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAV 176
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+ + VH + + D FV ALI Y KC +E A F +DVV+WT++
Sbjct: 177 SGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL 236
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
G + + VF +M G+KPN T S+L AC + G ++ G R
Sbjct: 237 SSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIH---GFAVR 293
Query: 350 VQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
+ FVC LV L ++ + +A +MP D +S+ +L+A E++ G
Sbjct: 294 HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRD-VVSWNGVLTAYFKNKEYEKGFS 352
Query: 408 VANNMMKLGNQSHEA 422
+ M + G ++ EA
Sbjct: 353 LFLKMSRDGVRADEA 367
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 118/261 (45%), Gaps = 25/261 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MGK +H +V + D+ +L++ Y + +R +FD M +DV +WNT++ I N
Sbjct: 419 MGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMI-IAN 477
Query: 61 DFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+G E L LF +++ + + +T + S C+ + G + +G ++++
Sbjct: 478 AMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIF---NSMGRDHLV 534
Query: 120 ----NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLARE 172
N + ++ +Y++ ++EA + M + L+ Y ++EL ++ +
Sbjct: 535 EPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAK 594
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
EI + + S+ + V AK EA ++ M + G+T CS
Sbjct: 595 KLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKT--------PGCSW--- 643
Query: 233 LQYGRLVHRFIL--QNNITQD 251
LQ G VH F++ ++NI D
Sbjct: 644 LQVGNKVHTFVVGDKSNIESD 664
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LI + G A F D T +T+I L +GL NEA++++ ++ +GIKP+
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163
Query: 318 EATFVSVLAACRHSG 332
F++ AC SG
Sbjct: 164 MPVFLAAAKACAVSG 178
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 166/497 (33%), Positives = 263/497 (52%), Gaps = 40/497 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL-----FTDARVLFDKMPFRDVGSWNTLMS 57
K HA + +T D Y+ SL+ Y ++ F + +FD + +V WN ++
Sbjct: 51 KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 110
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ + ++ + ++L+ +++ +K T + AC+ + G VH + K GL
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGG 170
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM------------- 164
++ ++ + MYA + EA R+ D+ G + V N +I+GY+
Sbjct: 171 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 230
Query: 165 -------------------ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
+V++ARE FDE+ ++D + W +M+ G ++ EALE+F
Sbjct: 231 PDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIF 290
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+M E + P + V+ SVLSAC++L L GR +H + +N+I D + T+L+DMY+KC
Sbjct: 291 HQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC 350
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G ++ A F K K+V +W MI GLA +G +A+ +F +M+ I PNE TFV VL
Sbjct: 351 GRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVL 407
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
AC H GL+ +G +F M Y V+P IEH+ C+VDLL RAGLL +AE+ + +P E
Sbjct: 408 NACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPT 467
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
+ ALL AC + +LG++V +++L Q+ Y LLSN YA G W EV E R+
Sbjct: 468 PAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKL 527
Query: 446 MKELQTRKKPGNSIIDL 462
MKE + PG SIIDL
Sbjct: 528 MKERGIKTTPGTSIIDL 544
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 99/445 (22%), Positives = 168/445 (37%), Gaps = 138/445 (31%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYG-------------------------------- 29
G +HAH+ K L D ++ +S I Y
Sbjct: 156 GVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYL 215
Query: 30 RMALFTDARVLFDKMPFRD-VGSWNTLMS-------------IYNDFSDSGEV------- 68
R AR LF+ MP R + +WN ++S +++ + E+
Sbjct: 216 RFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMID 275
Query: 69 -----------LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
L +F Q+ E I K L + SACA L L G+ +H YA + ++
Sbjct: 276 GYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQL 335
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ +L+ MYAKC +D A +F++M S + + S N +I G
Sbjct: 336 DGVLGTSLVDMYAKCGRIDLAWEVFEKM-SNKEVSSWNAMIGGL---------------- 378
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
MHG + E+A++LF KM + P+E V VL+AC+ +G
Sbjct: 379 ----------AMHG-----RAEDAIDLFSKM---DINPNEITFVGVLNACA------HGG 414
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
LV + + N + + I+ Y +++ L G
Sbjct: 415 LVQKGLTIFNSMRKEYGVEPQIEHYG------------------------CIVDLLGRAG 450
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV-YRVQPTIE- 355
L EA +V + +P A + ++L ACR G + +L R+G + ++P
Sbjct: 451 LLTEAEKVVSSIP---TEPTPAVWGALLGACRKHGNV----ELGERVGKILLELEPQNSG 503
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIM 380
+ L ++ ++AG + E K+M
Sbjct: 504 RYTLLSNIYAKAGRWEEVGEVRKLM 528
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 112/249 (44%), Gaps = 21/249 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + + ++ D +G SL+ Y + A +F+KM ++V SWN ++
Sbjct: 321 GRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAM 380
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLN 120
+ + + LF ++ I ++IT V + +ACA + G T+ + + G+E +
Sbjct: 381 HGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIE 437
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAREVFDEI 177
++ + + + EA ++ + + L+ + ++EL + ++ E+
Sbjct: 438 HYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLEL 497
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV--TPDEEVMVSVLSACSSLSNLQY 235
++ + + + KA + EE E+ K M + G+ TP +S+ +L
Sbjct: 498 EPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPG-----------TSIIDLGR 546
Query: 236 GRLVHRFIL 244
G VH+FI+
Sbjct: 547 GE-VHKFII 554
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/463 (33%), Positives = 257/463 (55%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH+ + K ++SD++V L+ Y + L DAR+ F+ +P +D+ +WN ++S Y+
Sbjct: 377 LGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYS 436
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + E L LF ++ EGI ++ TL + + A L+ +H + VH + K G +
Sbjct: 437 QYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIY 496
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ Y KC +++ A +F+E
Sbjct: 497 VVNSLIDSYGKCSHVED--------------------------------AERIFEECTIG 524
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V + SM+ + Q EEAL+LF +M D + PD V S+L+AC++LS + G+ +H
Sbjct: 525 DLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLH 584
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
IL+ D F +L++MY+KCGS+++A F + + +V+W+ MI GLA +G G
Sbjct: 585 VHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGR 644
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL++F QM ++G+ PN T VSVL AC H+GL+TE F M ++ +P EH+ C+
Sbjct: 645 QALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACM 704
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLL RAG + +A E + MP E + ALL A + + +LG++ A + L +
Sbjct: 705 IDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKS 764
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLL+N YA G W VAE RR M++ + +K+PG S I++K
Sbjct: 765 GTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVK 807
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 139/493 (28%), Positives = 227/493 (46%), Gaps = 83/493 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V + + D++V N+L+ Y + F D++ LFD++P R+V SWN L S Y
Sbjct: 175 IGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYV 234
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
GE + LF +++ GI ++ +L + +AC L GK +H Y K+G ++
Sbjct: 235 QIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPF 294
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
NAL+ MYAK ++ +A+ +F ++I
Sbjct: 295 SANALVDMYAKVGDLADAISVF--------------------------------EKIKQP 322
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIV W +++ GCV + E+ALEL +M G+ P+ + S L AC+ + + GR +H
Sbjct: 323 DIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLH 382
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ ++ D FV L+DMYSKC LE+A + F KD++ W +I G + Y
Sbjct: 383 SSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDM 442
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAA---------CR--HSGLITEGCQ--------LF 341
EAL +F +M ++GI N+ T ++L + CR H + G L
Sbjct: 443 EALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLI 502
Query: 342 RRMGGVYRVQP--------TIEHFVCLVDLLSRAGLLYQAEEFIKIM-------PAEDKF 386
G V+ TI V +++ Q EE +K+ D+F
Sbjct: 503 DSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRF 562
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL-------LSNFYALEGHWTEV 439
+ +LL+AC S F+ GK++ +++K G +VL L N YA G +
Sbjct: 563 VC-SSLLNACANLSAFEQGKQLHVHILKYG------FVLDIFAGNSLVNMYAKCG---SI 612
Query: 440 AEARRNMKELQTR 452
+A R EL R
Sbjct: 613 DDAGRAFSELTER 625
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 198/400 (49%), Gaps = 34/400 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HAH+TK+ L D + N LI+ Y + F AR L D+ D+ SW+ L+S Y
Sbjct: 75 GLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQ 134
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
G L+ F ++ G+ ++ T + AC+ ++ L GK VH G E + +
Sbjct: 135 NGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFV 194
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L++MYAKC E ++ RLFDE+ RN+VS N L + Y+ ++
Sbjct: 195 ANTLVVMYAKCDEFLDSKRLFDEI-PERNVVSWNALFSCYVQIDFCG------------- 240
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
EA+ LF +M+ G+ P+E + S+++AC+ L + G+++H
Sbjct: 241 ------------------EAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHG 282
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++++ D F AL+DMY+K G L +A+ F K D+V+W +I G + +
Sbjct: 283 YLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQ 342
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL + QM+R GI PN T S L AC GL G QL + + ++ + V LV
Sbjct: 343 ALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKM-DMESDLFVSVGLV 401
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
D+ S+ LL A ++P +D I++ A++S Y E
Sbjct: 402 DMYSKCDLLEDARMAFNLLPEKD-LIAWNAIISGYSQYWE 440
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 161/378 (42%), Gaps = 47/378 (12%)
Query: 44 MPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG 103
+PF+ L+ FS + + + ++ L S C + L G
Sbjct: 19 LPFKPA---PKLIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPG 75
Query: 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
+H + TK GL ++ N L+ +Y+KC+ GY
Sbjct: 76 LQIHAHITKSGLSDDPSIRNHLINLYSKCRNF------------------------GY-- 109
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223
AR++ DE + D+V W +++ G + AL F +M GV +E SV
Sbjct: 110 ------ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSV 163
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
L ACS + +L+ G+ VH ++ + D FV L+ MY+KC ++ F + ++V
Sbjct: 164 LKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNV 223
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC---RHS--GLITEGC 338
V+W + EA+ +FY+M GIKPNE + S++ AC R S G I G
Sbjct: 224 VSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHG- 282
Query: 339 QLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT 398
++G Y P + LVD+ ++ G L A + + D +S+ A+++ C+
Sbjct: 283 -YLIKLG--YDWDPFSAN--ALVDMYAKVGDLADAISVFEKIKQPD-IVSWNAVIAGCVL 336
Query: 399 YSEFDLGKKVANNMMKLG 416
+ + ++ M + G
Sbjct: 337 HEHHEQALELLGQMKRSG 354
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 254/463 (54%), Gaps = 33/463 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + + L+ + VG SL+ Y + + ARV+FD++P ++V +W L++ Y
Sbjct: 166 LGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYA 225
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
L L + + + +KIT + C L +GK VH Y + G L
Sbjct: 226 QQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELW 285
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ MY KC ++EA R++F ++ +
Sbjct: 286 VVNSLITMYCKCGGLEEA--------------------------------RKLFSDLPHR 313
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ G + +EA+ LF++M +G+ PD+ SVL++CSS + LQ G+ +H
Sbjct: 314 DVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIH 373
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL-ANYGLG 299
+ ++ D ++++AL+ MY+KCGS+++A + F + ++VV WT +I G A +G
Sbjct: 374 QQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRC 433
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL F QM+++GIKP++ TF SVL+AC H GL+ EG + FR M Y ++P +EH+ C
Sbjct: 434 REALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSC 493
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
VDLL RAG L +AE I MP + ALLSAC +S+ + G++ A N++KL
Sbjct: 494 FVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDD 553
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
AYV LS+ YA G + + + R+ M++ K+PG S I++
Sbjct: 554 DGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEV 596
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 115/396 (29%), Positives = 203/396 (51%), Gaps = 36/396 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA + K+ + + Y+ N+L+ Y + TDAR +FD + R++ SW ++ +
Sbjct: 66 GREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVA 125
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + E ++ + G DK+T V L +A E L G+ VH + GLE +
Sbjct: 126 GNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRV 185
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MYAKC ++ +A +FD + +N+V+ +LI GY VD+
Sbjct: 186 GTSLVGMYAKCGDISKARVIFDRL-PEKNVVTWTLLIAGYAQQGQVDV------------ 232
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
ALEL + M V P++ S+L C++ + L++G+ VHR
Sbjct: 233 -------------------ALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHR 273
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I+Q+ ++ +V +LI MY KCG LEEA F +DVVTWT M+ G A G +E
Sbjct: 274 YIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDE 333
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM-GGVYRVQPTIEHFVCL 360
A+ +F +M+++GIKP++ TF SVL +C + EG ++ +++ Y + ++ L
Sbjct: 334 AINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQS--AL 391
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
V + ++ G + A M +E +++ A+++ C
Sbjct: 392 VSMYAKCGSMDDASLVFNQM-SERNVVAWTAIITGC 426
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 35/257 (13%)
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
K + +EAL + MI +G +V +L C+ L +L+ GR VH IL++ I + +
Sbjct: 24 KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
++ L+ MY+KCGSL +A F +++V+WT MIE EA + + M+ G
Sbjct: 84 LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143
Query: 314 IKPNEATFVSVLAACR-----------HSGLITEGCQLFRRMG----GVYRVQPTIEHFV 358
KP++ TFVS+L A H ++ G +L R+G G+Y I
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKAR 203
Query: 359 CLVDLLSR----------AGLLYQAE-----EFIKIMP----AEDKFISYKALLSACITY 399
+ D L AG Q + E ++ M A +K I++ ++L C T
Sbjct: 204 VIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNK-ITFASILQGCTTP 262
Query: 400 SEFDLGKKVANNMMKLG 416
+ + GKKV +++ G
Sbjct: 263 AALEHGKKVHRYIIQSG 279
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/462 (33%), Positives = 259/462 (56%), Gaps = 1/462 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA V +T +V +L+ FY L R +FD+M + W ++ Y
Sbjct: 110 GEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVC 169
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + L LF+ + G+ D + + + SAC L L K +HC+ K G+E +
Sbjct: 170 VTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFV 229
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ L+ Y +C +D A R F E +NIV N +I+ ++ ++L +++F + D+D
Sbjct: 230 SSTLISTYGECGSLDYAYRFFQET-PMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRD 288
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W SM+ G + Q +EAL F +M GV+P+ ++S LSAC+S L G +H
Sbjct: 289 VVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHA 348
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ +N++ +D + ++LIDMYSKCG +++A+ F ++ +D+ TWT+++ GLA +G G +
Sbjct: 349 YVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEK 408
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL F +M+ ++P++ T V VL+AC H+GL+ +G F+ M V+ + P +EH+ C+V
Sbjct: 409 ALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMV 468
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R G L +A + I MP E I + A LSAC ++ +LG+ A ++ L +
Sbjct: 469 DLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLDPRDPW 528
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A V+LSN YA E W R+ +K+ +K PG S I++
Sbjct: 529 ARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVN 570
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 144/349 (41%), Gaps = 65/349 (18%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM--SIYNDFSDSGEVLILFKQLIFEG 79
N L +G + ++ +V WNT++ + N L+ + Q + G
Sbjct: 27 NKLPRIHGNTIATVEDPSAASRLDCANVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAG 86
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL 139
+ + T + L A +++ G+ VH + G + ALL Y C + +
Sbjct: 87 LRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGR 146
Query: 140 RLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
++FDEM +VLW ++ V PE
Sbjct: 147 QVFDEM--------------------------------RQPGLVLWTLIIRAYVCVTFPE 174
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
+ALELF+ M + G+TPD + +V+SAC L +L + +H FI ++ I DAFV + LI
Sbjct: 175 KALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLI 234
Query: 260 DMYSKCGSLEEALVTFYKTDCK-------------------------------DVVTWTT 288
Y +CGSL+ A F +T K DVV+W +
Sbjct: 235 STYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNS 294
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
MI G A G EAL F++ME G+ PN T +S L+AC G + G
Sbjct: 295 MIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTG 343
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 115/267 (43%), Gaps = 63/267 (23%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM---- 56
+ K +H + K+ ++ D +V ++LI YG A F + P +++ WNT++
Sbjct: 210 VAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSV 269
Query: 57 ------------------------SIYNDFSDSG---EVLILFKQLIFEGIVADKITLVI 89
S+ F+ G E L F ++ F G+ + +TL+
Sbjct: 270 EHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLS 329
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
SACA L G +H Y K + +++++L+ MY+KC ++D+A+++F+E +RR
Sbjct: 330 TLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEE-STRR 388
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D+ W S++ G + E+AL F KM
Sbjct: 389 -------------------------------DLFTWTSIVCGLAMHGRGEKALHYFSKMK 417
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ V PD+ MV VLSAC+ L G
Sbjct: 418 EAQVQPDDVTMVGVLSACAHAGLLDQG 444
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 101/241 (41%), Gaps = 18/241 (7%)
Query: 181 DIVLWRSMM-----HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
++ +W +M+ +G + P L + + + G+ P+ + +L A S ++
Sbjct: 53 NVFVWNTMIRKQVENGLITRDPP---LLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKE 109
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G VH +++ FV AL+ Y CG + + F + +V WT +I
Sbjct: 110 GEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVC 169
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG--LITEGCQLFRRMGGVYRVQPT 353
+AL +F M G+ P+ +V++AC G + + F G+
Sbjct: 170 VTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGI-----E 224
Query: 354 IEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
++ FV L+ G L A F + P ++ + + ++ + ++ +LGK++ +
Sbjct: 225 VDAFVSSTLISTYGECGSLDYAYRFFQETPMKN-IVVWNTMIHQSVEHNNLELGKQLFQS 283
Query: 412 M 412
M
Sbjct: 284 M 284
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 167/484 (34%), Positives = 263/484 (54%), Gaps = 28/484 (5%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDAR------VLFDKMPFRDVGSWNTLM 56
K +HA + KT D + ++ R++ +D R +FD++P R+ +WNT++
Sbjct: 32 KQVHAFLVKTGQTHDNAIATEIL----RLSATSDFRDIGYALSVFDQLPERNCFAWNTVI 87
Query: 57 SIYNDFSDSG-EVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVG 114
+ D + L++F Q++ E V ++ T + ACA + +L GK VH K G
Sbjct: 88 RALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFG 147
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLF---------------DEMGSRRNIVSLNILIN 159
L + LL MY C M++A LF DE G N+V N++++
Sbjct: 148 LVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVD 207
Query: 160 GYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEE 218
GY + + ARE+FD + + +V W M+ G + +EA+E+F +M+ G V P+
Sbjct: 208 GYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRV 267
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
+VSVL A S L L+ G+ VH + +N I D + +AL+DMY+KCGS+E+A+ F +
Sbjct: 268 TLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERL 327
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338
+V+TW +I GLA +G N+ +ME+ GI P++ T++++L+AC H+GL+ EG
Sbjct: 328 PQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGR 387
Query: 339 QLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT 398
F M ++P IEH+ C+VDLL RAG L +AEE I MP + + +KALL A
Sbjct: 388 SFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKM 447
Query: 399 YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNS 458
+ +G + A +M++ AYV LSN YA G+W VA R MK++ RK PG S
Sbjct: 448 HKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCS 507
Query: 459 IIDL 462
I++
Sbjct: 508 WIEI 511
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/161 (18%), Positives = 71/161 (44%), Gaps = 1/161 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K + D +G++L+ Y + A +F+++P +V +WN ++
Sbjct: 284 LGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLA 343
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-VHCYATKVGLEYML 119
+ ++ ++ GI +T + + SAC+ + G++ + VGL+ +
Sbjct: 344 MHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKI 403
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
++ + + ++EA L M + + V L+
Sbjct: 404 EHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGA 444
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 166/476 (34%), Positives = 259/476 (54%), Gaps = 49/476 (10%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIY 59
K +HA + +T L D + + LI ++ F A+ +FD++P ++ +WNTL+ Y
Sbjct: 52 KQIHAQMLRTGLFFDPFSASRLI-TAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAY 110
Query: 60 NDFSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
S+ + L++F +++ + DK T L A + LE+L GK H KV L
Sbjct: 111 ASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSD 170
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + N+L+ YAKC E+ R+F V+ R
Sbjct: 171 VFILNSLIHFYAKCGELGLGYRVF------------------------VNXPR------- 199
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+D+V W SM+ V+ PEEALELF++M + V P+ MV VLSAC+ S+ ++GR
Sbjct: 200 -RDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRW 258
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI-------- 290
VH +I +N I + + A++DMY+KCGS+E+A F K KD+V+WTTM+
Sbjct: 259 VHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGE 318
Query: 291 ----EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
+GLA +G G +A+ +F +M+ +KPN TF ++L AC H GL+ EG F +M
Sbjct: 319 YDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMEL 378
Query: 347 VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406
VY V P ++H+ C+VD+L RAGLL +A E I+ MP + ALL AC + L +
Sbjct: 379 VYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAE 438
Query: 407 KVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ + +++L +H AYVLLSN YA G W V+ R+ M+++ +K+PG S I++
Sbjct: 439 QACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEV 494
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 137/272 (50%), Gaps = 21/272 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK H V K L SD+++ NSLIHFY + +F P RDV SWN++++ +
Sbjct: 155 GKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQ 214
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF+++ + + + IT+V + SACA+ +G+ VH Y + + L +
Sbjct: 215 GGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTL 274
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NA+L MY KC +++A RLFD+M ++IVS ++ GY + D A+ +
Sbjct: 275 SNAMLDMYTKCGSVEDAKRLFDKM-PEKDIVSWTTMLVGYAKIGEYDAAQGL-------- 325
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVH 240
MHG K +A+ LF KM ++ V P+ ++L ACS + ++ GR +
Sbjct: 326 ------AMHGHGK-----DAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFN 374
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ L + ++D+ + G LEEA+
Sbjct: 375 QMELVYGVLPGVKHYACMVDILGRAGLLEEAV 406
>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 597
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/449 (35%), Positives = 258/449 (57%), Gaps = 4/449 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
++Y N+++ Y + + ARV+FD MP RDV SWNT++ Y + E L +K+
Sbjct: 112 NLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFR 171
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
GI ++ + L +AC + +L + H G + + +++ YAKC +M+
Sbjct: 172 RSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQME 231
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A R FDEM + ++I LI+GY + ++ A ++F E+ +K+ V W +++ G V+
Sbjct: 232 SAKRCFDEM-TVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQG 290
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
AL+LF+KMI GV P++ S L A +S+++L++G+ +H ++++ N+ +A V +
Sbjct: 291 SGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVIS 350
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
+LIDMYSK GSLE + F D K D V W TMI LA +GLG++ALR+ M + ++
Sbjct: 351 SLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQ 410
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
PN T V +L AC HSGL+ EG + F M + + P EH+ CL+DLL RAG +
Sbjct: 411 PNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMR 470
Query: 376 FIKIMPAE-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
I+ MP E DK I + A+L C + +LGKK A+ ++KL +S Y+LLS+ YA G
Sbjct: 471 KIEEMPFEPDKHI-WNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHG 529
Query: 435 HWTEVAEARRNMKELQTRKKPGNSIIDLK 463
W V + R MK+ + K+ S I+++
Sbjct: 530 KWELVEKLRGVMKKRRVNKEKAVSWIEIE 558
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/412 (24%), Positives = 183/412 (44%), Gaps = 34/412 (8%)
Query: 47 RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV 106
R + + +S + ++ + + + L +GI L L C + L GK +
Sbjct: 9 RPICVAQSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWI 68
Query: 107 HCYATKVGLEYMLNM-ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME 165
H + G + + N L+ MY KC + +A ++FD+M RN+ S N +++GY+
Sbjct: 69 HRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQM-HLRNLYSWNNMVSGYVKSG 127
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS 225
++ AR VFD + ++D+V W +M+ G + EAL +K+ G+ +E +L+
Sbjct: 128 MLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLT 187
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
AC LQ R H +L + + ++ID Y+KCG +E A F + KD+
Sbjct: 188 ACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHI 247
Query: 286 WTTMIEG----------------------------LANY---GLGNEALRVFYQMERKGI 314
WTT+I G +A Y G GN AL +F +M G+
Sbjct: 248 WTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGV 307
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
KP + TF S L A + G ++ M V+P L+D+ S++G L +E
Sbjct: 308 KPEQFTFSSCLCASASIASLRHGKEIHGYMIRT-NVRPNAIVISSLIDMYSKSGSLEASE 366
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLL 426
+I + + + ++SA + ++ ++M+K Q + +++
Sbjct: 367 RVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVV 418
>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
Length = 839
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/463 (32%), Positives = 250/463 (53%), Gaps = 34/463 (7%)
Query: 3 KGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GL H K+ D D+ V N+++ YG+ +A ++F +M RD SWN +++
Sbjct: 356 QGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALE 415
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + +++ G+ D T + ACA L+ L YG VH A K GL
Sbjct: 416 QNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAF 475
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ + ++ MY KC + EA +L D +G +
Sbjct: 476 VSSTVVDMYCKCGMITEAQKLHDRIGG--------------------------------Q 503
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++V W S++ G KQ EEA + F +M+D GV PD +VL C++L+ ++ G+ +H
Sbjct: 504 ELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIH 563
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I++ + D ++ + L+DMY+KCG++ ++L+ F K D V+W MI G A +G G
Sbjct: 564 GQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGF 623
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F +M++ + PN ATFV+VL AC H GL+ +GC+ F M Y+++P +EHF C+
Sbjct: 624 EALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACM 683
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L R+ +A +FI+ MP E + +K LLS C + ++ + A+N+++L
Sbjct: 684 VDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDS 743
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+LLSN YA G W +V+ RR M++ + +K+PG S I+++
Sbjct: 744 SVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQ 786
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/429 (27%), Positives = 183/429 (42%), Gaps = 73/429 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ HA + + +V N L+ Y R AR +FD MP RD SWNT+++ Y
Sbjct: 23 GQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAYAH 82
Query: 62 FSDSGEVLILFK-------------------------------QLIFEGIVADKITLVIL 90
D+G LF ++ G+ D+ TL +L
Sbjct: 83 AGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVL 142
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
AC LE L G +H A K GLE + +AL+ MY KC+ +++ALR F MG R +
Sbjct: 143 LKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNS 202
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
V W + + GCV+ +Q LELF +M
Sbjct: 203 --------------------------------VSWGAAIAGCVQNEQYTRGLELFVQMQR 230
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ + SV +C++++ L R +H ++N + D V TA++D+Y+K SL +
Sbjct: 231 LGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVD 290
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F+ V M+ GL GLG EAL++F M R GI + + V +AC
Sbjct: 291 ARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAE 350
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRAGLLYQAEEFIKIMPAEDKF 386
+G Q+ ++ + VC ++DL + L +A + M D
Sbjct: 351 VKGYLQGLQVH-----CLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDS- 404
Query: 387 ISYKALLSA 395
+S+ A+++A
Sbjct: 405 VSWNAIIAA 413
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 175/368 (47%), Gaps = 37/368 (10%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ LHAH K +D VG +++ Y + DAR F +P V + N +M
Sbjct: 257 RQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRT 316
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
E L LF+ + GI D ++L +FSACA ++ G VHC A K G + + +
Sbjct: 317 GLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVR 376
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
NA+L +Y KCK + EA +F EM R D
Sbjct: 377 NAILDLYGKCKALVEAYLVFQEMEQR--------------------------------DS 404
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +++ + + E+ + +M+ G+ PD+ SVL AC+ L +L+YG +VH
Sbjct: 405 VSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGK 464
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+++ + DAFV + ++DMY KCG + EA + +++V+W ++I G + EA
Sbjct: 465 AIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEA 524
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC--L 360
+ F +M G+KP+ T+ +VL C + I G Q+ G + + + + ++ L
Sbjct: 525 QKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIH---GQIIKQEMLGDEYISSTL 581
Query: 361 VDLLSRAG 368
VD+ ++ G
Sbjct: 582 VDMYAKCG 589
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 111/458 (24%), Positives = 186/458 (40%), Gaps = 87/458 (18%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G +HA KT L+ D+ G++L+ YG+ DA F M R+ SW ++ +
Sbjct: 154 LGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCV 213
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N+ G L LF Q+ G+ + +F +CA + L + +H +A K
Sbjct: 214 QNEQYTRG--LELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSAD 271
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ A++ +YAK LVD AR F +
Sbjct: 272 RVVGTAIVDVYAKADS-------------------------------LVD-ARRAFFSLP 299
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+ + +MM G V+ EAL+LF+ M G+ D + V SAC+ + G
Sbjct: 300 NHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQ 359
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH +++ D V+ A++D+Y KC +L EA + F + + +D V+W +I L
Sbjct: 360 VHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNEC 419
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACR----------------------------- 329
+ + +M R G++P++ T+ SVL AC
Sbjct: 420 YEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSST 479
Query: 330 ------HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE-------EF 376
G+ITE +L R+GG + V ++S L Q+E E
Sbjct: 480 VVDMYCKCGMITEAQKLHDRIGG--------QELVSWNSIISGFSLNKQSEEAQKFFSEM 531
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+ I D F +Y +L C + +LGK++ ++K
Sbjct: 532 LDIGVKPDHF-TYATVLDTCANLATIELGKQIHGQIIK 568
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 112/245 (45%), Gaps = 3/245 (1%)
Query: 86 TLVILFSACARLEK--LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
T L+ CA + L G+ H G + N LL MYA+C A +FD
Sbjct: 4 TFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFD 63
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
M R+ VS N ++ Y A +F + D D+V W +++ G + +++
Sbjct: 64 VM-PHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVG 122
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
L +M GV PD + +L AC L +L G +H ++ + D +AL+DMY
Sbjct: 123 LSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYG 182
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KC SLE+AL F+ ++ V+W I G L +F QM+R G+ ++ + S
Sbjct: 183 KCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYAS 242
Query: 324 VLAAC 328
V +C
Sbjct: 243 VFRSC 247
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 1/160 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K + D Y+ ++L+ Y + D+ ++F+K D SWN ++ Y
Sbjct: 558 LGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYA 617
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
E L +F+++ +V + T V + AC+ + L G + + ++ LE L
Sbjct: 618 LHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQL 677
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
++ + + K EAL+ M + V L++
Sbjct: 678 EHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLS 717
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/398 (38%), Positives = 231/398 (58%), Gaps = 5/398 (1%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
+ L + Q++ +G+ + T FS+ +L + GK +H A K+G + L + LL
Sbjct: 58 QALNFYAQMLTQGVEPNAFT----FSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLL 113
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
+YA+ ++ A +LFD M +++VSL ++ Y +D AR +FD + ++D V W
Sbjct: 114 DVYARGGDVVSAQQLFDTM-PEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWN 172
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
M+ G + P EAL LF++M+ P+E ++SVLSAC L L+ GR VH +I N
Sbjct: 173 VMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENN 232
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
I + V TAL+DMYSKCGSLE+A + F K D KDVV W +MI G A G EAL++F
Sbjct: 233 GIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLF 292
Query: 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366
M R G+ P TF+ +L+AC HSG +TEG +F +M Y ++P IEH+ C+V+LL R
Sbjct: 293 KSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGR 352
Query: 367 AGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLL 426
AG + QA E +K M E + + LL AC + + LG+K+ ++ + Y+LL
Sbjct: 353 AGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILL 412
Query: 427 SNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
SN YA G+W VA R MK+ +K+PG S I++ +
Sbjct: 413 SNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNN 450
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 139/327 (42%), Gaps = 75/327 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGR----------------------MALFT---- 35
GK LH+ K DSD+YV L+ Y R A+ T
Sbjct: 90 GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAK 149
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
ARVLFD M RD WN ++ Y E L+LF++++ +++T++ +
Sbjct: 150 HGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSV 209
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SAC +L L G+ VH Y G+++ +++ AL+ MY+KC +++A +FD
Sbjct: 210 LSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFD------- 262
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+I DKD+V W SM+ G +EAL+LFK M
Sbjct: 263 -------------------------KIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCR 297
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT------ALIDMYSK 264
G+ P + +LSAC G + + + N + + ++ ++++ +
Sbjct: 298 MGLHPTNITFIGILSACG-----HSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGR 352
Query: 265 CGSLEEALVTFYKTDCK-DVVTWTTMI 290
G +E+A + + D V W T++
Sbjct: 353 AGHVEQAYELVKNMNIEPDPVLWGTLL 379
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 111/253 (43%), Gaps = 36/253 (14%)
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
V L+ L Y + +D + +F + + W +++HG E+AL + +M+ +
Sbjct: 10 VPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQ 69
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM---------- 261
GV P+ S+L C ++ G+ +H ++ D +V+T L+D+
Sbjct: 70 GVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSA 125
Query: 262 ---------------------YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
Y+K G L+ A V F + +D V W MI+G G+ N
Sbjct: 126 QQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPN 185
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F +M + KPNE T +SVL+AC G + G + + +Q + L
Sbjct: 186 EALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIEN-NGIQFNVHVGTAL 244
Query: 361 VDLLSRAGLLYQA 373
VD+ S+ G L A
Sbjct: 245 VDMYSKCGSLEDA 257
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 87/182 (47%), Gaps = 1/182 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+++ + +++VG +L+ Y + DAR++FDK+ +DV +WN+++ Y
Sbjct: 222 GRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAM 281
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLN 120
S E L LFK + G+ IT + + SAC + G + + + G+E +
Sbjct: 282 XGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIE 341
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++ + + +++A L M + V L+ + L ++ + +VD+
Sbjct: 342 HYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQ 401
Query: 181 DI 182
++
Sbjct: 402 NL 403
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 24/160 (15%)
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y+ G L+ ++ F +T V WT +I G A GL +AL + QM +G++PN TF
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78
Query: 322 VSVLAACR-------HSGLITEG--CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
S+L C HS + G L+ R G L+D+ +R G +
Sbjct: 79 SSILKLCPIEPGKALHSQAVKLGFDSDLYVRTG--------------LLDVYARGGDVVS 124
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
A++ MP E +S A+L+ + E D + + + M
Sbjct: 125 AQQLFDTMP-EKSLVSLTAMLTCYAKHGELDAARVLFDGM 163
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 162/443 (36%), Positives = 259/443 (58%), Gaps = 18/443 (4%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLI---LFKQLIFEGIV-ADKITLVILFS 92
A +F++MP R+ SWNT++ +++ SD + LI LF +++ + V ++ T +
Sbjct: 78 AHKIFNQMPQRNCFSWNTIIRGFSE-SDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLK 136
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE-------- 144
ACA+ K+ GK +H A K G + + L+ MY C M +A LF +
Sbjct: 137 ACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMV 196
Query: 145 -MGSRRN----IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
M RR IV N++I+GY+ + AR +FD++ + +V W +M+ G +
Sbjct: 197 VMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFK 256
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
+A+E+F++M + P+ +VSVL A S L +L+ G +H + + I D + +ALI
Sbjct: 257 DAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALI 316
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
DMYSKCG +E+A+ F + ++V+TW+ MI G A +G +A+ F +M + G++P++
Sbjct: 317 DMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDV 376
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
++++L AC H GL+ EG + F +M V ++P IEH+ C+VDLL R+GLL +AEEFI
Sbjct: 377 AYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILN 436
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
MP + + +KALL AC ++GK+VAN +M + AYV LSN YA +G+W+EV
Sbjct: 437 MPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEV 496
Query: 440 AEARRNMKELQTRKKPGNSIIDL 462
+E R MKE RK PG S+ID+
Sbjct: 497 SEMRLRMKEKDIRKDPGCSLIDI 519
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 149/326 (45%), Gaps = 71/326 (21%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN---DFSDSGEVLIL 71
D +I + N +I Y R+ AR+LFDKM R V SWNT++S Y+ F D+ EV
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEV--- 261
Query: 72 FKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK 131
F+++ I + +TLV + A +RL L G+ +H YA G+ + +AL+ MY+K
Sbjct: 262 FREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSK 321
Query: 132 CKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHG 191
C +++A+ +F+ + R N+++ + +ING+ +HG
Sbjct: 322 CGIIEKAIHVFERL-PRENVITWSAMINGF--------------------------AIHG 354
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
Q +A++ F KM GV P + +++L+ACS ++ GR R+ Q ++ D
Sbjct: 355 -----QAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGR---RYFSQ-MVSVD 405
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
E + Y M++ L GL +EA M
Sbjct: 406 GL----------------EPRIEHY----------GCMVDLLGRSGLLDEAEEFILNMP- 438
Query: 312 KGIKPNEATFVSVLAACRHSGLITEG 337
IKP++ + ++L ACR G + G
Sbjct: 439 --IKPDDVIWKALLGACRMQGNVEMG 462
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH + + + D +G++LI Y + + A +F+++P +V +W+ +++ +
Sbjct: 292 LGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFA 351
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
+G+ + F ++ G+ + + L +AC+ + G+ V GLE +
Sbjct: 352 IHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRI 411
Query: 120 NMENALLLMYAKCKEMDEA 138
++ + + +DEA
Sbjct: 412 EHYGCMVDLLGRSGLLDEA 430
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 252/459 (54%), Gaps = 1/459 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H + L ++VGN+L+H Y D+R FD+M R+V SWN+++ Y D
Sbjct: 134 VHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGD 193
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ EV LF ++ +G + D+ TLV L AC++ L G+ VHC G L +E+A
Sbjct: 194 TREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESA 253
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MY KC ++ A R F EM +++VS ++ V+ AR FD + +++IV
Sbjct: 254 LVDMYGKCGDLWMARRCF-EMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVS 312
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ V+ Q EAL+L+ +M +G+ PDE +V+VLSA + +L G++VH +I
Sbjct: 313 WNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIR 372
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
N D + +L+DMY+KCG ++ A+ F + ++VV+W +I GLA +G + +
Sbjct: 373 DNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTIT 432
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
F M P+ TFV++L+AC H GL+ G F M VY V+ +EH+ C+VDLL
Sbjct: 433 FFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLL 492
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
R G L +A IK MP + + + ALL AC + +G++V +++L S +V
Sbjct: 493 GRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLLELEGISGGLFV 552
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
L+SN W ++ R+ MKE TRK G S I++
Sbjct: 553 LISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEIN 591
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 134/503 (26%), Positives = 204/503 (40%), Gaps = 107/503 (21%)
Query: 5 LHAHV---TKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
LHAH+ + SD+ + + + AR LFD +P D +NT++ Y +
Sbjct: 30 LHAHLLVHGSLSAASDLLLASYCALAKAGHGVLCHARRLFDGIPGPDRVMYNTIIRAYCN 89
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E L L + ++ GI+ ++ TL + AC + + VH A ++GL + +
Sbjct: 90 SSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHALAVHGVALRLGLVGQVFV 149
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL YA + ++ R FDEM RN+VS N +I GY
Sbjct: 150 GNALLHSYASAGSLGDSRRFFDEM-VDRNVVSWNSMIGGY-------------------- 188
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+A E LF +M +G DE +VS+L ACS NL+ GRLVH
Sbjct: 189 -----------AQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHC 237
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN- 300
+L + D +++AL+DMY KCG L A F K VV+WT+M+ +G N
Sbjct: 238 RMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNA 297
Query: 301 ------------------------------EALRVFYQMERKGIKPNEATFVSVLAACRH 330
EAL ++ QM+ +G+ P+E T V+VL+A
Sbjct: 298 ARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGR 357
Query: 331 SGLITEG--CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP------- 381
G +T G L+ R +Y P + L+D+ ++ G + A M
Sbjct: 358 IGDLTVGKMVHLYIR-DNIY--NPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSW 414
Query: 382 -----------------------AEDKF----ISYKALLSACITYSEFDLGKKVANNMMK 414
D F I++ ALLSAC + G+ +M
Sbjct: 415 NVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRH 474
Query: 415 LGNQSHEA--YVLLSNFYALEGH 435
+ N HE Y + + GH
Sbjct: 475 VYNVKHEVEHYACMVDLLGRRGH 497
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 9/184 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H ++ + D+ + NSL+ Y + A LF +M R+V SWN ++
Sbjct: 363 VGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLA 422
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKL----HYGKTV-HCYATKVGL 115
+ + + F+ ++ + D IT V L SAC+ L HY +++ H Y K +
Sbjct: 423 MHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEV 482
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
E+ M + L + +++A+ L EM + ++V L+ V + R+V
Sbjct: 483 EHYACMVDLL----GRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIK 538
Query: 176 EIVD 179
++++
Sbjct: 539 QLLE 542
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 249/462 (53%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K+ D DI V N+++ YG+ +A ++F M +D SWN +++
Sbjct: 412 GQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQ 471
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ ++ F +++ G+ D T + ACA L L YG VH K GL +
Sbjct: 472 NGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFV 531
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ ++ MY KC +DEA +L D I +
Sbjct: 532 ASTVVDMYCKCGIIDEAQKLH--------------------------------DRIGGQQ 559
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G K+ EEA + F +M+D G+ PD +VL C++L+ ++ G+ +H
Sbjct: 560 VVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHG 619
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I++ + D ++ + L+DMY+KCG + ++L+ F K + +D V+W MI G A +GLG E
Sbjct: 620 QIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVE 679
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
ALR+F +M+++ + PN ATFV+VL AC H GL +GC+ F M Y+++P +EHF C+V
Sbjct: 680 ALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMV 739
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L R+ +A +FI MP + + +K LLS C + ++ + A+N++ L
Sbjct: 740 DILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSS 799
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+LLSN YA G W +V+ RR +K+ + +K+PG S I+++
Sbjct: 800 VYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQ 841
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 183/404 (45%), Gaps = 42/404 (10%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D N+++ Y + A LFD MP DV SWN L+S Y E + LF ++
Sbjct: 124 DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 183
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
G+ D+ T +L +C+ LE+L G VH A K GLE + +AL+ MY KC+ +D
Sbjct: 184 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 243
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+AL F M RN VS W + + GCV+ +
Sbjct: 244 DALCFFYGM-PERNWVS-------------------------------WGAAIAGCVQNE 271
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
Q LELF +M G+ + S +C+++S L GR +H ++N + D V T
Sbjct: 272 QYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGT 331
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
A++D+Y+K SL +A F+ V T M+ GL GLG EA+ +F M R I+
Sbjct: 332 AIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRF 391
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRAGLLYQ 372
+ + V +AC + +G Q+ ++ + +C ++DL + L +
Sbjct: 392 DVVSLSGVFSACAETKGYFQGQQVH-----CLAIKSGFDVDICVNNAVLDLYGKCKALME 446
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
A + M +D +S+ A+++A +D N M++ G
Sbjct: 447 AYLIFQGMKQKDS-VSWNAIIAALEQNGHYDDTILHFNEMLRFG 489
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 1/220 (0%)
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N LL MYA+C A R+FD M RR+ VS N ++ Y + A +FD + D
Sbjct: 96 VSNCLLQMYARCAGAACARRVFDAM-PRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP 154
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +++ G + +E+++LF +M GV+PD +L +CS+L L G VH
Sbjct: 155 DVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVH 214
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ + D +AL+DMY KC SL++AL FY ++ V+W I G
Sbjct: 215 ALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYV 274
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
L +F +M+R G+ ++ ++ S +C + G QL
Sbjct: 275 RGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQL 314
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 4/174 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K + D Y+ ++L+ Y + D+ ++F+K+ RD SWN ++ Y
Sbjct: 613 LGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYA 672
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
E L +F+++ E +V + T V + AC+ + G + H T LE L
Sbjct: 673 LHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQL 732
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN---GYIDMELVDLA 170
++ + + K EA++ + M + + V L++ D+E+ +LA
Sbjct: 733 EHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELA 786
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 167/463 (36%), Positives = 256/463 (55%), Gaps = 8/463 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDK--MPFRDVGSWNTLMSIYN 60
+ +HAHV + + + +V +SL+ Y AR L + P +WN L+S +N
Sbjct: 43 RAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVGECDTPV----AWNALISGHN 98
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK-LHYGKTVHCYATKVGLEYML 119
GE F + G +T V + SAC + + + G VH G+ L
Sbjct: 99 RGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDL 158
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ENAL+ MYA+C +M A ++FD M R++VS L++G + VD AR++FD + +
Sbjct: 159 RVENALVDMYAECADMGSAWKVFDGM-QVRSVVSWTSLLSGLARLGQVDEARDLFDRMPE 217
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D V W +M+ G V A + EALE+F++M V+ DE MVSV++AC+ L L+ G V
Sbjct: 218 RDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWV 277
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
++ + I DAFV ALIDMYSKCGS+E AL F +D TWT +I GLA G
Sbjct: 278 RVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYE 337
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA+ +F++M R P+E TF+ VL AC H+GL+ +G + F M Y + P + H+ C
Sbjct: 338 EEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGC 397
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
++DLL RAG + +A + I MP + LL+AC + ++G+ VA +++L ++
Sbjct: 398 IIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPEN 457
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+LLSN YA W +V R + E +K+PG S+I++
Sbjct: 458 SMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEM 500
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 136/330 (41%), Gaps = 65/330 (19%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
+G +H V + + D+ V N+L+ Y A A +FD M R V SW +L+S
Sbjct: 141 LGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLA 200
Query: 58 ----------IYNDFSDSG------------------EVLILFKQLIFEGIVADKITLVI 89
+++ + E L +F+++ + + AD+ T+V
Sbjct: 201 RLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVS 260
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +ACA+L L G+ V Y ++ G++ + NAL+ MY+KC ++ AL +F M R
Sbjct: 261 VITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHR- 319
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D W +++ G EEA+E+F +MI
Sbjct: 320 -------------------------------DKFTWTAIILGLAVNGYEEEAIEMFHRMI 348
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
TPDE + VL+AC+ + GR I NI + +ID+ + G +
Sbjct: 349 RVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKI 408
Query: 269 EEALVTFYKTD-CKDVVTWTTMIEGLANYG 297
EAL T + + W T++ +G
Sbjct: 409 TEALDTIDQMPMTPNSTIWGTLLAACRVHG 438
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 243/459 (52%), Gaps = 40/459 (8%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H HV K+ + D Y+ +SLIH Y A+ LF+ RDV SWN ++ Y +
Sbjct: 217 VHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVE 276
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
G ++F +++ +++ N
Sbjct: 277 MGHARMVFDRMVCRDVIS---------------------------------------WNT 297
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
++ YA ++DEA RLFDEM RN+VS N ++ G++ V+ A +F E+ +D+V
Sbjct: 298 MINGYAIVGKIDEAKRLFDEM-PERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVS 356
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W SM+ + +P EAL LF +M GV P E +VS+LSAC+ L L G +H +I
Sbjct: 357 WNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIN 416
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
N I ++ V TAL+DMY+KCG + A F + KDV+ W T+I G+A +G EA +
Sbjct: 417 DNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQ 476
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+F +M+ G++PN+ TFV++L+AC H+G++ EG +L M Y ++P +EH+ C++DLL
Sbjct: 477 LFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLL 536
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
+RAG L +A E I MP E + ALL C + F+LG+ V ++ L Y+
Sbjct: 537 ARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYI 596
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
LLSN YA W + + R MK K PG S+I+LK
Sbjct: 597 LLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELK 635
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A+ +F + + L+ S++ +K P EAL L+ M+ G+ PD V+ AC+
Sbjct: 148 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 207
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
S +G LVH ++++ D+++ ++LI +Y+ L A F +DVV+W M
Sbjct: 208 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 267
Query: 290 IEGLANYGLGNEALRVFYQM 309
I+G + A VF +M
Sbjct: 268 IDGYVKHVEMGHARMVFDRM 287
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 1 MGKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
+ KGLH H + ++ + VG +L+ Y + + A +F+ M +DV +WNT+++
Sbjct: 405 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 464
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEY 117
+ E LFK++ G+ + IT V + SAC+ + G K + C ++ G+E
Sbjct: 465 MAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEP 524
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
+ ++ + A+ ++EA+ L M N +L L+ G
Sbjct: 525 KVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGG 567
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 249/462 (53%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K+ D DI V N+++ YG+ +A ++F M +D SWN +++
Sbjct: 370 GQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQ 429
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ ++ F +++ G+ D T + ACA L L YG VH K GL +
Sbjct: 430 NGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFV 489
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ ++ MY KC +DEA +L D I +
Sbjct: 490 ASTVVDMYCKCGIIDEAQKLH--------------------------------DRIGGQQ 517
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G K+ EEA + F +M+D G+ PD +VL C++L+ ++ G+ +H
Sbjct: 518 VVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHG 577
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I++ + D ++ + L+DMY+KCG + ++L+ F K + +D V+W MI G A +GLG E
Sbjct: 578 QIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVE 637
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
ALR+F +M+++ + PN ATFV+VL AC H GL +GC+ F M Y+++P +EHF C+V
Sbjct: 638 ALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMV 697
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L R+ +A +FI MP + + +K LLS C + ++ + A+N++ L
Sbjct: 698 DILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSS 757
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+LLSN YA G W +V+ RR +K+ + +K+PG S I+++
Sbjct: 758 VYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQ 799
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 183/404 (45%), Gaps = 42/404 (10%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D N+++ Y + A LFD MP DV SWN L+S Y E + LF ++
Sbjct: 82 DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 141
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
G+ D+ T +L +C+ LE+L G VH A K GLE + +AL+ MY KC+ +D
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+AL F M RN VS W + + GCV+ +
Sbjct: 202 DALCFFYGM-PERNWVS-------------------------------WGAAIAGCVQNE 229
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
Q LELF +M G+ + S +C+++S L GR +H ++N + D V T
Sbjct: 230 QYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGT 289
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
A++D+Y+K SL +A F+ V T M+ GL GLG EA+ +F M R I+
Sbjct: 290 AIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRF 349
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRAGLLYQ 372
+ + V +AC + +G Q+ ++ + +C ++DL + L +
Sbjct: 350 DVVSLSGVFSACAETKGYFQGQQVH-----CLAIKSGFDVDICVNNAVLDLYGKCKALME 404
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
A + M +D +S+ A+++A +D N M++ G
Sbjct: 405 AYLIFQGMKQKDS-VSWNAIIAALEQNGHYDDTILHFNEMLRFG 447
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 3/263 (1%)
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN--MENALLLMYAKCKEMDE 137
+ ++T +F +CA+ + +A V ++ N + N LL MYA+C
Sbjct: 11 VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYARCAGAAC 70
Query: 138 ALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ 197
A R+FD M RR+ VS N ++ Y + A +FD + D D+V W +++ G +
Sbjct: 71 ARRVFDAM-PRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGM 129
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
+E+++LF +M GV+PD +L +CS+L L G VH ++ + D +A
Sbjct: 130 FQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSA 189
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
L+DMY KC SL++AL FY ++ V+W I G L +F +M+R G+ +
Sbjct: 190 LVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVS 249
Query: 318 EATFVSVLAACRHSGLITEGCQL 340
+ ++ S +C + G QL
Sbjct: 250 QPSYASAFRSCAAMSCLNTGRQL 272
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 4/174 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K + D Y+ ++L+ Y + D+ ++F+K+ RD SWN ++ Y
Sbjct: 571 LGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYA 630
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
E L +F+++ E +V + T V + AC+ + G + H T LE L
Sbjct: 631 LHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQL 690
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN---GYIDMELVDLA 170
++ + + K EA++ + M + + V L++ D+E+ +LA
Sbjct: 691 EHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELA 744
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 168/470 (35%), Positives = 251/470 (53%), Gaps = 14/470 (2%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IYN 60
K +HA + + LD D Y+ N ++ F + +F + ++ +NT++ + N
Sbjct: 27 KHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLN 86
Query: 61 D-FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
D F +S E+ + + EG+ D T L ACARL G +H K G E
Sbjct: 87 DSFQESIEI---YHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDA 143
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM----ELVDLARE--- 172
+ +L+ +Y KC +D A ++FD++ +N+ + +I+GYI + E +D+ R
Sbjct: 144 FVNTSLVSLYGKCGFIDNAFKVFDDI-PEKNVAAWTAIISGYIGVGKCREAIDMFRRACS 202
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
VFD +++KDIV W SM+ G P+EAL+LF KM++EG PD MV VL AC+ L
Sbjct: 203 VFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGA 262
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L+ G + +N + + TALIDMY+KCG ++ A F KD+V W I G
Sbjct: 263 LELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISG 322
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
LA G A +F QME+ GI+P+ TFV +L AC H+GL+ EG Q F M V+ + P
Sbjct: 323 LAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTP 382
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
IEH+ C+VDLL RAG L +A + +K MP E I + ALL C + + L + V +
Sbjct: 383 EIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQL 442
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ L + YVLLSN Y+ W + A+ R M E +K PG S I++
Sbjct: 443 IALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEV 492
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 130/339 (38%), Gaps = 86/339 (25%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G LH V K +SD +V SL+ YG+ +A +FD +P ++V +W ++S Y
Sbjct: 126 LGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYI 185
Query: 60 ----------------------------------NDFSDSG---EVLILFKQLIFEGIVA 82
++ +G E L LF +++ EG
Sbjct: 186 GVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRP 245
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN--MENALLLMYAKCKEMDEALR 140
D +V + ACARL L G + E++ N + AL+ MYAKC MD A
Sbjct: 246 DCYAMVGVLCACARLGALELGNWASNLMDRN--EFLGNPVLGTALIDMYAKCGRMDSAW- 302
Query: 141 LFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
EVF + KDIV+W + + G + +
Sbjct: 303 -------------------------------EVFRGMRKKDIVVWNAAISGLAMSGHVKA 331
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQNNITQDAFVK 255
A LF +M G+ PD V +L AC+ + GR + F L I
Sbjct: 332 AFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYG--- 388
Query: 256 TALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEG 292
++D+ + G L+EA LV + +V W ++ G
Sbjct: 389 -CMVDLLGRAGFLDEAHQLVKSMPMEANAIV-WGALLGG 425
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
++L++ + VH +L+ + +D+++ ++ G+ + F++T ++ + T
Sbjct: 19 GFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNT 78
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
MI GL E++ +++ M ++G+ P+ TF +L AC G +L G V
Sbjct: 79 MIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLH---GLVV 135
Query: 349 RVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
+ + FV LV L + G + A + +P E ++ A++S I
Sbjct: 136 KAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIP-EKNVAAWTAIISGYI 185
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 249/462 (53%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K+ D DI V N+++ YG+ +A ++F M +D SWN +++
Sbjct: 370 GQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQ 429
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ ++ F +++ G+ D T + ACA L L YG VH K GL +
Sbjct: 430 NGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFV 489
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ ++ MY KC +DEA +L D I +
Sbjct: 490 ASTVVDMYCKCGIIDEAQKLH--------------------------------DRIGGQQ 517
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G K+ EEA + F +M+D G+ PD +VL C++L+ ++ G+ +H
Sbjct: 518 VVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHG 577
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I++ + D ++ + L+DMY+KCG + ++L+ F K + +D V+W MI G A +GLG E
Sbjct: 578 QIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVE 637
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
ALR+F +M+++ + PN ATFV+VL AC H GL +GC+ F M Y+++P +EHF C+V
Sbjct: 638 ALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMV 697
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L R+ +A +FI MP + + +K LLS C + ++ + A+N++ L
Sbjct: 698 DILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSS 757
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+LLSN YA G W +V+ RR +K+ + +K+PG S I+++
Sbjct: 758 VYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQ 799
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 183/404 (45%), Gaps = 42/404 (10%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D N+++ Y + A LFD MP DV SWN L+S Y E + LF ++
Sbjct: 82 DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 141
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
G+ D+ T +L +C+ LE+L G VH A K GLE + +AL+ MY KC+ +D
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+AL F M RN VS W + + GCV+ +
Sbjct: 202 DALCFFYGM-PERNWVS-------------------------------WGAAIAGCVQNE 229
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
Q LELF +M G+ + S +C+++S L GR +H ++N + D V T
Sbjct: 230 QYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGT 289
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
A++D+Y+K SL +A F+ V T M+ GL GLG EA+ +F M R I+
Sbjct: 290 AIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRF 349
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRAGLLYQ 372
+ + V +AC + +G Q+ ++ + +C ++DL + L +
Sbjct: 350 DVVSLSGVFSACAETKGYFQGQQVH-----CLAIKSGFDVDICVNNAVLDLYGKCKALME 404
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
A + M +D +S+ A+++A +D N M++ G
Sbjct: 405 AYLIFQGMKQKDS-VSWNAIIAALEQNGHYDDTILHFNEMLRFG 447
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 1/220 (0%)
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N LL MYA+C A R+FD M RR+ VS N ++ Y + A +FD + D
Sbjct: 54 VSNCLLQMYARCAGAACARRVFDAM-PRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP 112
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +++ G + +E+++LF +M GV+PD +L +CS+L L G VH
Sbjct: 113 DVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVH 172
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ + D +AL+DMY KC SL++AL FY ++ V+W I G
Sbjct: 173 ALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYV 232
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
L +F +M+R G+ ++ ++ S +C + G QL
Sbjct: 233 RGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQL 272
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 4/174 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K + D Y+ ++L+ Y + D+ ++F+K+ RD SWN ++ Y
Sbjct: 571 LGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYA 630
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
E L +F+++ E +V + T V + AC+ + G + H T LE L
Sbjct: 631 LHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQL 690
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN---GYIDMELVDLA 170
++ + + K EA++ + M + + V L++ D+E+ +LA
Sbjct: 691 EHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELA 744
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 160/459 (34%), Positives = 243/459 (52%), Gaps = 40/459 (8%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H HV K+ + D Y+ NSLIH Y A+ LF RDV SWN ++ Y +
Sbjct: 22 VHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGE 81
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
G ++F +++ +++ N
Sbjct: 82 MGHTRMVFDRMVCRDVIS---------------------------------------WNT 102
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
++ YA ++DEA RLFDEM RN+VS N +++G++ V+ A +F E+ +D+V
Sbjct: 103 IINGYAIVGKIDEAKRLFDEM-PERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVS 161
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W SM+ + +P EAL LF +M GV P E +VS+LSAC+ L L G +H +I
Sbjct: 162 WNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIN 221
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
N I ++ V TAL+DMY+KCG + A F + KDV+ W T+I G+A +G EA +
Sbjct: 222 DNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQ 281
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+F +M+ ++PN+ TFV++L+AC H+G++ EG +L M Y ++P +EH+ C++DLL
Sbjct: 282 LFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLL 341
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
+RAGLL +A E I MP E + ALL C + F+LG+ V ++ L Y+
Sbjct: 342 ARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYI 401
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
LLSN YA W + + R MK K PG S+I+LK
Sbjct: 402 LLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELK 440
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 3/163 (1%)
Query: 1 MGKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
+ KGLH H + ++ + VG +L+ Y + + A +F+ M +DV +WNT+++
Sbjct: 210 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 269
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEY 117
E LFK++ + + IT V + SAC+ + G K + C ++ G+E
Sbjct: 270 MAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEP 329
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
+ + ++ + A+ ++EA+ L M N +L L+ G
Sbjct: 330 KVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGG 372
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 89/203 (43%), Gaps = 10/203 (4%)
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
V+ AC+ S +G LVH ++++ D+++ +LI +Y+ L A F +D
Sbjct: 6 VIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRD 65
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
VV+W MI+G G VF +M + + ++ +++ G I E +LF
Sbjct: 66 VVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDV----ISWNTIINGYAIVGKIDEAKRLFD 121
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
M + + + ++ + G + +A MP D +S+ ++L+ +
Sbjct: 122 EM-----PERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRD-VVSWNSMLACYAQCGKP 175
Query: 403 DLGKKVANNMMKLGNQSHEAYVL 425
+ + + M +G + EA V+
Sbjct: 176 NEALALFDQMRAVGVKPTEATVV 198
>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
Length = 799
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 162/493 (32%), Positives = 265/493 (53%), Gaps = 57/493 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHAH K SD VG +++ Y + TDAR F +P V + N +M
Sbjct: 269 GRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMM----- 323
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ LF +I I D ++L +FSACA + G+ VHC A K
Sbjct: 324 -------VGLF--MIRSSIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIK--------- 365
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI-----NGY--------------- 161
++L +Y KCK + EA +F M +++ VS N +I NG+
Sbjct: 366 --SVLDLYGKCKALMEAYLIFQGM-KQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFD 422
Query: 162 -------IDM----ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+DM ++D A+++ D I + +V W +++ G K+ E A + F +M+D
Sbjct: 423 AFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEAAQKFFSEMLD 482
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ PD +VL C++L+ ++ G+ +H I++ + D ++ + L+DMY+KCG + +
Sbjct: 483 MGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPD 542
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
+L+ F K + +D V+W MI G A +GLG EALR+F +M+++ + PN ATFV+VL AC H
Sbjct: 543 SLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSH 602
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
GL +GC+ F M Y+++P +EHF C+VD+L R+ +A +FI MP + + +K
Sbjct: 603 VGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWK 662
Query: 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450
LLS C + ++ + A+N++ L Y+LLSN YA G W +V+ RR +K+ +
Sbjct: 663 TLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGR 722
Query: 451 TRKKPGNSIIDLK 463
+K+PG S I+ +
Sbjct: 723 LKKEPGCSWIEAQ 735
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 128/277 (46%), Gaps = 32/277 (11%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D N+++ Y + A LFD MP DV SWN L+S Y E + LF ++
Sbjct: 82 DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 141
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
G+ D+ T +L +C+ LE+L G VH A K GLE + +AL+ MY KC+ +D
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+AL F M RN VS W S + GCV+ +
Sbjct: 202 DALCFFYGM-PERNWVS-------------------------------WGSAIAGCVQNE 229
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
Q LELF +M G+ + S +C+++S L GR +H ++N + D V T
Sbjct: 230 QYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGT 289
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
A++D+Y+K SL +A F+ V T M+ GL
Sbjct: 290 AIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 114/220 (51%), Gaps = 1/220 (0%)
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N LL MYA+C A R+FD M RR+ VS N ++ Y + A +FD + D
Sbjct: 54 VSNCLLQMYARCAGAACARRVFDAM-PRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP 112
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +++ G + +E+++LF +M GV+PD +L +CS+L L G VH
Sbjct: 113 DVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVH 172
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ + D +AL+DMY KC SL++AL FY ++ V+W + I G
Sbjct: 173 ALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYV 232
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
L +F +M+R G+ ++ ++ S +C + G QL
Sbjct: 233 RGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQL 272
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 101/411 (24%), Positives = 186/411 (45%), Gaps = 33/411 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G +HA KT L+ D+ G++L+ YG+ DA F MP R+ SW + ++ +
Sbjct: 167 LGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGSAIAGCV 226
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N+ G L LF ++ G+ + + F +CA + L+ G+ +H +A K
Sbjct: 227 QNEQYVRG--LELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSD 284
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMG------SRRNIVSLNILINGYIDMELVDLARE 172
+ A++ +YAK + +A R F + S +V L +I I ++V L+
Sbjct: 285 RVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL-FMIRSSIRFDVVSLS-G 342
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK--------MIDEGVTPDEEVMVSVL 224
VF + +H C+ K L+L+ K +I +G+ + V + +
Sbjct: 343 VFSACAETKGYFPGQQVH-CLAIK---SVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAI 398
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
A N Y + F + DAFV + ++DMY KCG ++EA + + VV
Sbjct: 399 IAALE-QNGHYDDTILHF--NEMLRFDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVV 455
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
+W ++ G + A + F +M G+KP+ TF +VL C + I G Q+
Sbjct: 456 SWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIH--- 512
Query: 345 GGVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
G + + + + ++ LVD+ ++ G + + + + D F+S+ A++
Sbjct: 513 GQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRD-FVSWNAMI 562
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 2/167 (1%)
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
+D ++ YS G + A+ F DVV+W ++ G G+ E++ +F +M
Sbjct: 81 RDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEM 140
Query: 310 ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL 369
R+G+ P+ TF +L +C ++ G Q+ + ++ + LVD+ +
Sbjct: 141 ARRGVSPDRTTFAVLLKSCSALEELSLGVQV-HALAVKTGLEIDVRTGSALVDMYGKCRS 199
Query: 370 LYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L A F MP E ++S+ + ++ C+ ++ G ++ M +LG
Sbjct: 200 LDDALCFFYGMP-ERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLG 245
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 4/174 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K + D Y+ ++L+ Y + D+ ++F+K+ RD SWN ++ Y
Sbjct: 507 LGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYA 566
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
E L +F+++ E +V + T V + AC+ + G + H T LE L
Sbjct: 567 LHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQL 626
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN---GYIDMELVDLA 170
++ + + K EA++ + M + + V L++ D+E+ +LA
Sbjct: 627 EHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELA 680
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 166/465 (35%), Positives = 244/465 (52%), Gaps = 35/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +HA V L+ D+YVGNS++ Y + ARV+FD+M RD+ SWNT+MS +
Sbjct: 142 MGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFV 201
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ +F + +G V D+ TL+ L SAC + L GK +H Y + G
Sbjct: 202 KNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNG------ 255
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
E G N +N +I+ Y + E V AR++F+ + K
Sbjct: 256 -----------------------ESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVK 292
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W S++ G K +ALELF +M+ G PDE ++SVL+AC+ +S L+ G V
Sbjct: 293 DVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQ 352
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++++ + V TALI MY+ CGSL A F + K++ T M+ G +G G
Sbjct: 353 SYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGR 412
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EA+ +FY+M KG+ P+E F +VL+AC HSGL+ EG ++F +M Y V+P H+ CL
Sbjct: 413 EAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCL 472
Query: 361 VDLLSRAGLL---YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
VDLL RAG L Y E +K+ P ED + ALLSAC + L A + +L
Sbjct: 473 VDLLGRAGYLDEAYAVIENMKLKPNED---VWTALLSACRLHRNVKLAVISAQKLFELNP 529
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YV LSN YA E W +V R + + + RK P S ++L
Sbjct: 530 DGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVEL 574
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 150/330 (45%), Gaps = 36/330 (10%)
Query: 5 LHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFS 63
LHAHVT L + Y+ L Y A+ +FD++ ++ WN+++ Y +
Sbjct: 44 LHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNN 103
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
L L+ +++ G D T + AC L G+ VH GLE + + N
Sbjct: 104 SPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGN 163
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
++L MY K +++ A +FD M R D+
Sbjct: 164 SILSMYFKFGDVEAARVVFDRMLVR--------------------------------DLT 191
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W +MM G VK + A E+F M +G D ++++LSAC + +L+ G+ +H ++
Sbjct: 192 SWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYV 251
Query: 244 LQNNITQ---DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++N + + F+ ++IDMY C S+ A F KDVV+W ++I G G
Sbjct: 252 VRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAF 311
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRH 330
+AL +F +M G P+E T +SVLAAC
Sbjct: 312 QALELFGRMVVVGAVPDEVTVISVLAACNQ 341
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 4/210 (1%)
Query: 123 NALLLMYAKCKEMDEALRLFDEMGS----RRNIVSLNILINGYIDMELVDLAREVFDEIV 178
LL K + +AL+L + + RRN L Y + A+ +FD+IV
Sbjct: 26 GTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIV 85
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K+ LW SM+ G P AL L+ KM+ G PD VL AC L + GR
Sbjct: 86 LKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRK 145
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH ++ + +D +V +++ MY K G +E A V F + +D+ +W TM+ G G
Sbjct: 146 VHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGE 205
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAAC 328
A VF M R G + T +++L+AC
Sbjct: 206 ARGAFEVFGDMRRDGFVGDRTTLLALLSAC 235
>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Glycine max]
Length = 775
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 178/533 (33%), Positives = 273/533 (51%), Gaps = 71/533 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ HA KTA D++ +SL++ Y + L +AR LFD+MP R+ SW T++S Y
Sbjct: 135 GRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYAS 194
Query: 62 FSDSGEVLILFKQLIFE--GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ E LFK + E G ++ + SA ++ G+ VH A K GL ++
Sbjct: 195 QELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIV 254
Query: 120 NMENALLLMYAKCKEM-------------------------------DEALRLFDEM--- 145
++ NAL+ MY KC + D+AL+LF +M
Sbjct: 255 SVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQS 314
Query: 146 GSRRNIVSLNILING--------------------------YIDMELVDL---------A 170
G + +L +IN Y+ LVD+ A
Sbjct: 315 GELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDA 374
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230
R+ F+ I D+VLW S++ G V+ E AL L+ KM GV P++ M SVL ACS+L
Sbjct: 375 RKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNL 434
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
+ L G+ +H I++ N + + + +AL MY+KCGSL++ F++ +DV++W MI
Sbjct: 435 AALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMI 494
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
GL+ G GNE L +F +M +G KP+ TFV++L+AC H GL+ G F+ M + +
Sbjct: 495 SGLSQNGRGNEGLELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRGWVYFKMMFDEFNI 554
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
PT+EH+ C+VD+LSRAG L++A+EFI+ + ++ LL+A + ++DLG
Sbjct: 555 APTVEHYACMVDILSRAGKLHEAKEFIESATVDHGLCLWRILLAASKNHRDYDLGAYAGE 614
Query: 411 NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+M+LG+ AYVLLS+ Y G W +V R MK K+PG S I+LK
Sbjct: 615 KLMELGSLESSAYVLLSSIYTALGKWEDVERVRGMMKARGVTKEPGCSWIELK 667
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 129/393 (32%), Positives = 195/393 (49%), Gaps = 46/393 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHA + T S + NSLI+ Y + + F+ A ++FD + +DV SWN L++ ++
Sbjct: 29 GRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINAFSQ 88
Query: 62 ---FSDSGEVLILFKQLIF--EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
+ S V+ LF+QL+ + IV + TL +F+A + L G+ H A K
Sbjct: 89 QQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACS 148
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + ++LL MY K + EA LFDEM RN VS +I+GY EL D
Sbjct: 149 HDVFAASSLLNMYCKTGLVFEARDLFDEM-PERNAVSWATMISGYASQELAD-------- 199
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE--GVTPDEEVMVSVLSACSSLSNLQ 234
EA ELFK M E G +E V SVLSA + +
Sbjct: 200 -----------------------EAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVN 236
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
GR VH ++N + V AL+ MY KCGSLE+AL TF + K+ +TW+ M+ G A
Sbjct: 237 TGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFA 296
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMGGVYRVQ 351
+G ++AL++FY M + G P+E T V V+ AC + I EG Q+ ++G Y +Q
Sbjct: 297 QFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLG--YELQ 354
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
+ LVD+ ++ G + A + + + D
Sbjct: 355 LYV--LSALVDMYAKCGSIVDARKGFECIQQPD 385
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 117/254 (46%), Gaps = 39/254 (15%)
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
C R ++L G+ +H G + N+L+ +YAKC S+ N+V
Sbjct: 20 CTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHF-----------SKANLV- 67
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK--AKQPE-EALELFKKMI- 209
FD I +KD+V W +++ + A P + LF++++
Sbjct: 68 --------------------FDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVM 107
Query: 210 -DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+ + P+ + V +A S+LS+ + GR H ++ + D F ++L++MY K G +
Sbjct: 108 AHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLV 167
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM--ERKGIKPNEATFVSVLA 326
EA F + ++ V+W TMI G A+ L +EA +F M E KG NE F SVL+
Sbjct: 168 FEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLS 227
Query: 327 ACRHSGLITEGCQL 340
A L+ G Q+
Sbjct: 228 ALTCYMLVNTGRQV 241
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 15/185 (8%)
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279
++ L C+ L+ GR +H IL + +LI++Y+KC +A + F +
Sbjct: 13 VLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSIN 72
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRV---FYQ--MERKGIKPNEATFVSVLAACRHSGLI 334
KDVV+W +I + +L V F Q M K I PN T V A
Sbjct: 73 NKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDS 132
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
G R V+ H V L+++ + GL+++A + MP E +S+
Sbjct: 133 RAG-----RQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMP-ERNAVSWA 186
Query: 391 ALLSA 395
++S
Sbjct: 187 TMISG 191
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 156/460 (33%), Positives = 250/460 (54%), Gaps = 41/460 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G H + + D++V SLI YG+ AR +FD+M R+V SW +++ Y
Sbjct: 142 GVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYAS 201
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
FSD E LF ++ + V+
Sbjct: 202 FSDLVEARKLFDEMPEKNAVS--------------------------------------- 222
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NA++ Y KC ++ A ++FDEM RN+VS +I+GY + AR VF+E ++D
Sbjct: 223 WNAIISGYVKCGDLRSARKMFDEM-PHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERD 281
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G V+ QP EA+++F +M V PDE +MVS++SACS + +L+ + V
Sbjct: 282 VVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDD 341
Query: 242 FILQNNI-TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ +++I A V ALIDM +KCGS++ A F + +D++++ +M++GL+ +G G
Sbjct: 342 YVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGP 401
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+A+ +F +M +G+ P++ F +L AC +GL+ EGC F M Y + P+ +H+ C+
Sbjct: 402 QAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACM 461
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +A E +K MP E ++ ALL AC + + +LG+ VA+ + +L Q+
Sbjct: 462 VDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNA 521
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
YVLLSN YA W +V+ R M+E RK PG S I
Sbjct: 522 GNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 561
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 10/224 (4%)
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
VF+ + VLW + + G + + LF +M PD+ S++ ACS +
Sbjct: 78 SVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVC 137
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
++ G H ++ + D FV T+LID+Y KCG + A F + ++VV+WT MI
Sbjct: 138 GVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIA 197
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
G A++ EA ++F +M K N ++ ++++ G + ++F M
Sbjct: 198 GYASFSDLVEARKLFDEMPEK----NAVSWNAIISGYVKCGDLRSARKMFDEMP-----H 248
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ F ++D +++G + A + P D +++ AL+S
Sbjct: 249 RNVVSFTTMIDGYAKSGDMASARFVFEEAPERD-VVAWSALISG 291
>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
Length = 792
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 168/531 (31%), Positives = 264/531 (49%), Gaps = 73/531 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA + + ++SD +VG++LI+ Y R + AR F+K+ + V W +LM+ Y
Sbjct: 263 GKAIHARIVSSNMESD-FVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQ 321
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L L+ ++ EG+ AD +T V ACA L L GK +H + G + ++ +
Sbjct: 322 TCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQSLV-V 380
Query: 122 ENALLLMYAKCKEMD--------------------------------EALRLFDEM---G 146
ALL MYAKC E+D EAL L+D+M G
Sbjct: 381 HTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEG 440
Query: 147 SR-----------------------------------RNIVSLNILINGYIDMELVDLAR 171
+R N+ N L+ Y ++LA+
Sbjct: 441 TRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAK 500
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
F+ KD+V W +M+ + EAL+L++ M +GV PDE + S LSAC+
Sbjct: 501 SAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISG 560
Query: 232 NLQYGRLVHRFILQNNITQDAF-VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
+LQ GR +H +L+N + + V+TAL++MY +CG LE A F +DV++WT M
Sbjct: 561 SLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMT 620
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
A G ++ L ++ +M GI+PNE TF S+L C H+GL+ G + F M + V
Sbjct: 621 SAYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEV 680
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
P EHF+C+VDLL R+G L AE ++ MP + +++ +L +C T+S+ D K+ A
Sbjct: 681 VPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAAR 740
Query: 411 NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+ +L ++ Y LLS+ + G E E + +MKE+ +K PG S+I+
Sbjct: 741 RVKELDPENTSLYSLLSSIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLIE 791
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 198/409 (48%), Gaps = 49/409 (11%)
Query: 5 LHAHVTKTA--LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY--N 60
+HA + + + ++ + N+L++ YG+ +AR +FD + RD SW +++S Y N
Sbjct: 166 IHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANN 225
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
F D E L L++Q+ +GI D IT AC +L GK +H +E
Sbjct: 226 GFCD--EALDLYQQMDADGIQPDSITFTSALLACTKLVD---GKAIHARIVSSNMESDF- 279
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +AL+ MYA+C + V AR+ F++I +K
Sbjct: 280 VGSALINMYARCGD--------------------------------VSSARQAFEKIQNK 307
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V W S+M V+ EAL+L+ +M EGV D V+ L AC+SL L+ G+ +H
Sbjct: 308 HVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIH 367
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLG 299
+ + Q V TAL+ MY+KCG L+ A F + K +V WT MI A G
Sbjct: 368 SRVFECGF-QSLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHT 426
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL ++ QM +G +PNE TF +VLAAC SG + G ++ + + +
Sbjct: 427 QEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENS-ELASNVAVQNA 485
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
LV + ++ G L A+ + +D +S+ A++ A Y++ LG++
Sbjct: 486 LVTMYAKCGSLELAKSAFEASGRKD-LVSWNAMIGA---YAQHGLGREA 530
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 163/346 (47%), Gaps = 39/346 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP-FRDVGSWNTLMSIYN 60
GK +H H+ +T + ++GN LI YG AR F + V +N ++S Y
Sbjct: 61 GKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIKAVACYNQMLSAYG 120
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG--LEYM 118
L L+ ++ EG DKIT I+ +C+ + L + +H + +
Sbjct: 121 KNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASIIEAPQIIRDN 180
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L+++NAL+ MY KC ++EA ++F D I
Sbjct: 181 LSLQNALVNMYGKCGSVEEARKVF--------------------------------DGIK 208
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++D V W SM+ +EAL+L+++M +G+ PD S L AC+ L + G+
Sbjct: 209 NRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVD---GKA 265
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H I+ +N+ D FV +ALI+MY++CG + A F K K VV WT+++
Sbjct: 266 IHARIVSSNMESD-FVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCH 324
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
EAL ++ +M+ +G+ + T+V+ L AC G + EG + R+
Sbjct: 325 YREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRV 370
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 156/373 (41%), Gaps = 62/373 (16%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L C RL L GK VH + + G + N L+ MY C E+ A F S +
Sbjct: 48 LLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIK 107
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+ N +++ Y LW ALEL+ +M
Sbjct: 108 AVACYNQMLSAY------------------GKNGLW-------------NRALELYHRMC 136
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN--ITQDAFVKTALIDMYSKCGS 267
+EG PD+ VL +CS++ +L+ R +H I++ I + ++ AL++MY KCGS
Sbjct: 137 EEGPEPDKITYFIVLGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGS 196
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+EEA F +D V+WT+MI AN G +EAL ++ QM+ GI+P+ TF S L A
Sbjct: 197 VEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLA 256
Query: 328 CR--------HSGLITEGCQ----------LFRRMGGVYRVQPTIE-----HFVCLVDLL 364
C H+ +++ + ++ R G V + E H VC L+
Sbjct: 257 CTKLVDGKAIHARIVSSNMESDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLM 316
Query: 365 SRAGLLYQAEEFIKIMPAEDK------FISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
+ E + + D ++Y L AC + GK + + + + G Q
Sbjct: 317 TAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQ 376
Query: 419 SHEAYVLLSNFYA 431
S + L YA
Sbjct: 377 SLVVHTALLTMYA 389
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
E+ +L C L +L G+LVHR +L+ ++ F+ LI MY CG + A F
Sbjct: 43 ELYDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQN 102
Query: 278 -TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
K V + M+ GL N AL ++++M +G +P++ T+ VL +C G + E
Sbjct: 103 FASIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLRE 162
Query: 337 G 337
Sbjct: 163 A 163
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 152/445 (34%), Positives = 250/445 (56%), Gaps = 2/445 (0%)
Query: 19 YVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE 78
++ L++ Y ++ DA+ +F+ + D+ SW L+S+Y S + +F L
Sbjct: 38 HLACKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHS 97
Query: 79 GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEA 138
G+ D +V SAC + L G+ VH + L + NAL+ MY++ ++ A
Sbjct: 98 GLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVA 157
Query: 139 LRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP 198
+F M +++ S L+NG+I ++ AR +FDE+ ++ V W +M+ G V+ + P
Sbjct: 158 CSVFKTM-EIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVP 216
Query: 199 EEALELFKKMIDEGVT-PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
LELF++M EG P +V+VLS C+ + G VH ++ + N+ D V A
Sbjct: 217 IPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNA 276
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
L+DMY+K G+L AL F + +DV +WTTMI GLA +G G AL F M + G+ PN
Sbjct: 277 LMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPN 336
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI 377
E T +SVL+AC H+GL+ EG LF++M + ++P I+H+ C+VDLL RAGLL +A+E I
Sbjct: 337 EVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELI 396
Query: 378 KIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWT 437
+ MP + + +++LLSAC+ + L + +++L Y+LL N Y W
Sbjct: 397 EHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWE 456
Query: 438 EVAEARRNMKELQTRKKPGNSIIDL 462
+ +AR+ M++ + +KKPG S +++
Sbjct: 457 DALKARKAMRDRRVKKKPGCSWVEV 481
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 139/346 (40%), Gaps = 69/346 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V + L SD VGN+LI Y R A +F M +DV SW +L++ +
Sbjct: 122 GRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIK 181
Query: 62 FSD---------------------------SGEVLI----LFKQLIFEGI-VADKITLVI 89
+D GEV I LF+++ EG IT+V
Sbjct: 182 CNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVA 241
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ S CA + G +VH Y K L+ + + NAL+ MYAK + AL++F EM R
Sbjct: 242 VLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKR- 300
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D+ W +M+ G + ALE F M
Sbjct: 301 -------------------------------DVFSWTTMISGLALHGKGTHALEAFSDMS 329
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
GV P+E ++SVLSACS + GR L + + + I ++D+ + G L
Sbjct: 330 KSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLL 389
Query: 269 EEALVTFYKTDCK-DVVTWTTMIEGL---ANYGLGNEALRVFYQME 310
EA K D V W +++ N L A ++ ++E
Sbjct: 390 REAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELE 435
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 20/225 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H +V KT LD D+ V N+L+ Y + A +F +MP RDV SW T++S
Sbjct: 254 LGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLA 313
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-----VHCYATKVGL 115
L F + G+V +++TL+ + SAC+ + G++ V C+ K +
Sbjct: 314 LHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKI 373
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI---DMELVDLARE 172
++ M + L + + EA L + M + + V L++ + ++ L ++A +
Sbjct: 374 QHYGCMVDLL----GRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGK 429
Query: 173 VFDEIVDKD----IVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
+ E+ D I+LW A + E+AL+ K M D V
Sbjct: 430 MIIELEPDDDGVYILLWNIY----CSASRWEDALKARKAMRDRRV 470
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 157/462 (33%), Positives = 248/462 (53%), Gaps = 32/462 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ +H H K +S ++V N+LIH Y A+ +FD M RD+ SWNTL+ Y+
Sbjct: 42 ISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYS 101
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ EVL LF + I AD +T+V + AC+ L + ++ Y + LE +
Sbjct: 102 QYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVY 161
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N L+ MY + + A R++FD + +
Sbjct: 162 LGNTLIDMYGRLGNLTAA--------------------------------RKLFDNMPKR 189
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D++ W SM+ G +A Q +A++LF++M+ V PD+ + SVLSAC+ L L G VH
Sbjct: 190 DVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVH 249
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I ++ + D +V +LIDMY KCG +E+AL F++ KD V+WT++I GLA G N
Sbjct: 250 HYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFAN 309
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F QM R+G++P TFV +L AC H+GL+ +G + F M V+ + P ++H+ C+
Sbjct: 310 SALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCV 369
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLLSR+G + +A EFIK MP + ++ LLSAC + L + +++L
Sbjct: 370 VDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDS 429
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA W + + R M++ +K G+S I++
Sbjct: 430 GNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEV 471
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 267/463 (57%), Gaps = 2/463 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HA + L ++ ++ ++ A LF+++ +V +N+++ Y
Sbjct: 27 KKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 63 SDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S +V+ ++KQL+ + I D+ T +F +CA L + GK VH + K G + +
Sbjct: 87 SLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVT 146
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENAL+ MY K ++ +A ++FDEM S R+++S N L++GY + + A+ +F ++DK
Sbjct: 147 ENALIDMYMKFDDLVDAHKVFDEM-SERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKT 205
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W +M+ G EA++ F++M G+ PDE ++SVL +C+ L +L+ G+ +H
Sbjct: 206 IVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHM 265
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + + V ALI+MYSKCG L +A+ F +T KDV++W+TMI G A +G +
Sbjct: 266 YAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHR 325
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A F +M+R +KPN TF+ +L+AC H GL +G + F M Y+++P IEH+ CL+
Sbjct: 326 AFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLI 385
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L+RAG L +A E K MP + + +LLS+C T D+ ++++++
Sbjct: 386 DVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVALVAMDHLVEVEPDDMG 445
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVLL+N YA G W +V+ R+ +++ +K PG S+I++ +
Sbjct: 446 NYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPGCSLIEVNN 488
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 125/304 (41%), Gaps = 64/304 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H H+ K + N+LI Y + DA +FD+M RDV SWN+L+S Y
Sbjct: 127 LGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYA 186
Query: 61 DFSD-----------------------SG--------EVLILFKQLIFEGIVADKITLVI 89
SG E + F+++ GI D+I+L+
Sbjct: 187 RLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLIS 246
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +CA L L GK +H YA + GL + NAL+ MY+KC + +A++LF++
Sbjct: 247 VLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKG-- 304
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
KD++ W +M+ G A E F +M
Sbjct: 305 ------------------------------KDVISWSTMISGYAYHGNAHRAFETFIEMQ 334
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSL 268
V P+ + +LSACS + Q G + Q+ I LID+ ++ G L
Sbjct: 335 RAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKL 394
Query: 269 EEAL 272
E A+
Sbjct: 395 ERAV 398
>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 163/498 (32%), Positives = 269/498 (54%), Gaps = 34/498 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-------------- 46
+G+ +H+ V K L S I V NSL++ Y + A+++FD+M
Sbjct: 163 IGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHM 222
Query: 47 -----------------RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV-ADKITLV 88
RDV SWN ++S YN E L +F +++ + DK TL
Sbjct: 223 QSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLA 282
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE-MGS 147
SACA LE L GK +H + + + + NAL+ MY+K ++ A ++ ++ M S
Sbjct: 283 SALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMIS 342
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
++++ L++GY+ + ++ AR +FD + +D+V W +M+ G V+ ++A+ELF+
Sbjct: 343 NLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRS 402
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
MI EG P+ + ++LS SSL++L +GR +H ++ V ALI MY+K GS
Sbjct: 403 MIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGS 462
Query: 268 LEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+ +A F K D +TWT+MI LA +GLG EAL +F +M GIKP+ T+V VL+
Sbjct: 463 INDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLS 522
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC H GL+ +G + M +++ PT H+ C++DL RAGLL +A FI+ MP E
Sbjct: 523 ACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDV 582
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
I++ +LL++C + +L + A ++ + ++ AY L+N Y+ G W A R++M
Sbjct: 583 IAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSM 642
Query: 447 KELQTRKKPGNSIIDLKH 464
K+ +K G S + +K+
Sbjct: 643 KDKGVKKDQGFSWVQIKN 660
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/474 (25%), Positives = 222/474 (46%), Gaps = 76/474 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS---- 57
GK +HA + K L +++ N+L++FY + DA +FD+MP + V SWN ++S
Sbjct: 32 GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91
Query: 58 ---------------------------IYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
YN + +F++++ + + + TL +
Sbjct: 92 GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
++CA +E L G+ VH + K GL +++ N+LL MYAK + A +FD M ++
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRM-KLKS 210
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI- 209
S N +I+ ++ LVDLA+ F++++++D+V W +M+ G + EAL++F KM+
Sbjct: 211 TSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLM 270
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS-- 267
D PD+ + S LSAC++L NL+ G+ +H I++ V ALI MYSK G
Sbjct: 271 DSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVE 330
Query: 268 -----LEEALVT--------------------------FYKTDCKDVVTWTTMIEGLANY 296
+E+++++ F +DVV WT MI G
Sbjct: 331 IAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQN 390
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF---RRMGGVYRVQPT 353
G +A+ +F M ++G KPN T ++L+ + G Q+ R G V +
Sbjct: 391 GFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVS 450
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
L+ + +++G + A ++ + I++ +++ I ++ LG++
Sbjct: 451 ----NALITMYAKSGSINDARWVFNLIHWKRDTITWTSMI---IALAQHGLGEE 497
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 251/462 (54%), Gaps = 32/462 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H +V + +S + V +L+ Y + + ARV+FD M R V SWN+++ Y
Sbjct: 149 IGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYV 208
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D+ +++F++++ EG+ +T++ ACA L L GK VH ++ L+ ++
Sbjct: 209 QSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVS 268
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ MY+KCK VD+A ++F + +K
Sbjct: 269 VMNSLISMYSKCKR--------------------------------VDIAADIFKNLRNK 296
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V W +M+ G + EAL F +M + PD MVSV+ A + LS + + +H
Sbjct: 297 TLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIH 356
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + ++ FV TAL+DMY+KCG++ A F + + V+TW MI+G +GLG
Sbjct: 357 GLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGK 416
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
++ +F +M++ IKPN+ TF+ L+AC HSGL+ EG F M Y ++PT++H+ +
Sbjct: 417 TSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAM 476
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L QA +FI+ MP + Y A+L AC + DLG+K A + KL
Sbjct: 477 VDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDG 536
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+VLL+N YA W +VA+ R M++ +K PG S++++
Sbjct: 537 GYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEI 578
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 122/407 (29%), Positives = 194/407 (47%), Gaps = 41/407 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H V + +++ +++ Y + DA +FD+MP RD+ WNT++S Y
Sbjct: 49 GKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQ 108
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L+L ++ EG D IT+V + A A L G VH Y + G E ++N+
Sbjct: 109 NGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNV 168
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MY+KC + A +FD M R +VS N +I+GY
Sbjct: 169 STALVDMYSKCGSVSIARVIFDGM-DHRTVVSWNSMIDGY-------------------- 207
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V++ E A+ +F+KM+DEGV P ++ L AC+ L +L+ G+ VH+
Sbjct: 208 -----------VQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHK 256
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ Q + D V +LI MYSKC ++ A F K +V+W MI G A G NE
Sbjct: 257 LVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNE 316
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR--VQPTIEHFVC 359
AL F +M+ + IKP+ T VSV+ A + + + G V R + +
Sbjct: 317 ALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIH---GLVIRRFLDKNVFVMTA 373
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406
LVD+ ++ G ++ A + +M A I++ A++ Y LGK
Sbjct: 374 LVDMYAKCGAIHTARKLFDMMNAR-HVITWNAMIDG---YGTHGLGK 416
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 120/279 (43%), Gaps = 32/279 (11%)
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y S L F ++ + + L C L GK +H G +
Sbjct: 5 YAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWN 64
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L ++ MYAKC+++++A +FD M R
Sbjct: 65 LFAMTGVVNMYAKCRQINDAYNMFDRMPER------------------------------ 94
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D+V W +M+ G + + AL L +M +EG PD +VS+L A + L+ G
Sbjct: 95 --DLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMA 152
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH ++L+ V TAL+DMYSKCGS+ A V F D + VV+W +MI+G G
Sbjct: 153 VHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGD 212
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
A+ +F +M +G++P T + L AC G + G
Sbjct: 213 AEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERG 251
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 5/183 (2%)
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247
M+ G K+ + AL F +M + V P +L C S+L+ G+ +H ++ +
Sbjct: 1 MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
+ + F T +++MY+KC + +A F + +D+V W TMI G A G AL +
Sbjct: 61 FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV--QPTIEHFVCLVDLLS 365
+M +G +P+ T VS+L A + L+ G + G V R + + LVD+ S
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVH---GYVLRAGFESLVNVSTALVDMYS 177
Query: 366 RAG 368
+ G
Sbjct: 178 KCG 180
>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53360, mitochondrial; Flags: Precursor
gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 768
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 161/462 (34%), Positives = 238/462 (51%), Gaps = 31/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H K+ L + G SL Y R AR +FD++ D SWN +++ +
Sbjct: 289 GSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLAN 348
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + +F Q+ G + D I+L L A + L G +H Y K G L +
Sbjct: 349 NGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTV 408
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+LL MY C ++ LF++ RN + D
Sbjct: 409 CNSLLTMYTFCSDLYCCFNLFEDF---RN----------------------------NAD 437
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +++ C++ +QP E L LFK M+ PD M ++L C +S+L+ G VH
Sbjct: 438 SVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHC 497
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ L+ + + F+K LIDMY+KCGSL +A F D +DVV+W+T+I G A G G E
Sbjct: 498 YSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEE 557
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F +M+ GI+PN TFV VL AC H GL+ EG +L+ M + + PT EH C+V
Sbjct: 558 ALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVV 617
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL+RAG L +AE FI M E + +K LLSAC T L +K A N++K+ +
Sbjct: 618 DLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNST 677
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A+VLL + +A G+W A R +MK+ +K PG S I+++
Sbjct: 678 AHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIE 719
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 160/340 (47%), Gaps = 33/340 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H H+ + D + N ++ YG+ DAR +FD MP R++ S+ ++++ Y+
Sbjct: 86 GRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQ 145
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + L+ +++ E +V D+ + ACA + GK +H K+ L
Sbjct: 146 NGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIA 205
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+NAL+ MY + +M +A R VF I KD
Sbjct: 206 QNALIAMYVRFNQMSDASR--------------------------------VFYGIPMKD 233
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ W S++ G + EAL K+M+ GV P+E + S L ACSSL YG +H
Sbjct: 234 LISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIH 293
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + +A +L DMY++CG L A F + + D +W +I GLAN G +
Sbjct: 294 GLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYAD 353
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
EA+ VF QM G P+ + S+L A +++G Q+
Sbjct: 354 EAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQI 393
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 99/415 (23%), Positives = 177/415 (42%), Gaps = 49/415 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LHA V K S + N+LI Y R +DA +F +P +D+ SW+++++ ++
Sbjct: 186 LGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFS 245
Query: 61 DFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L K+++ G+ ++ AC+ L + YG +H K L
Sbjct: 246 QLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNA 305
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+L MYA+C ++ A R+FD++ R + S N++I G + D
Sbjct: 306 IAGCSLCDMYARCGFLNSARRVFDQI-ERPDTASWNVIIAGLANNGYAD----------- 353
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
EA+ +F +M G PD + S+L A + L G +
Sbjct: 354 --------------------EAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQI 393
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF--YKTDCKDVVTWTTMIEGLANYG 297
H +I++ D V +L+ MY+ C L F ++ + D V+W T++ +
Sbjct: 394 HSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNN-ADSVSWNTILTACLQHE 452
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI--E 355
E LR+F M +P+ T ++L C + G Q+ Y ++ + E
Sbjct: 453 QPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVH-----CYSLKTGLAPE 507
Query: 356 HFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
F+ L+D+ ++ G L QA M D +S+ L+ + Y++ G++
Sbjct: 508 QFIKNGLIDMYAKCGSLGQARRIFDSMDNRD-VVSWSTLI---VGYAQSGFGEEA 558
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 33/244 (13%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T + L AC+ L G+ +H + +Y + N +L MY KC
Sbjct: 69 TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKC------------- 115
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
GS R+ AREVFD + ++++V + S++ G + Q EA+ L+
Sbjct: 116 GSLRD-------------------AREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLY 156
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
KM+ E + PD+ S++ AC+S S++ G+ +H +++ + + ALI MY +
Sbjct: 157 LKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRF 216
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNEATFVSV 324
+ +A FY KD+++W+++I G + G EAL +M G+ PNE F S
Sbjct: 217 NQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSS 276
Query: 325 LAAC 328
L AC
Sbjct: 277 LKAC 280
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 71/120 (59%)
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC 280
+S++ ACSS +L GR +H IL +N D + ++ MY KCGSL +A F
Sbjct: 71 ISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPE 130
Query: 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
+++V++T++I G + G G EA+R++ +M ++ + P++ F S++ AC S + G QL
Sbjct: 131 RNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQL 190
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 1/182 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + KT L + ++ N LI Y + AR +FD M RDV SW+TL+ Y
Sbjct: 491 LGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYA 550
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
E LILFK++ GI + +T V + +AC+ + + G K T+ G+
Sbjct: 551 QSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTK 610
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ ++ + A+ ++EA R DEM ++V L++ V LA++ + I+
Sbjct: 611 EHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILK 670
Query: 180 KD 181
D
Sbjct: 671 ID 672
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 161/500 (32%), Positives = 272/500 (54%), Gaps = 52/500 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH H KT +D+ +G + + Y + +DA+ LF+ +P ++ S+N ++ Y
Sbjct: 293 LGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYA 352
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
SD +G+ D+++L F ACA ++ G VH + K + +
Sbjct: 353 R-SD-------------KGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNIC 398
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI-----NG--------------- 160
+ NA+L MY KC + EA +F+EM S R+ VS N +I NG
Sbjct: 399 VANAILDMYGKCGALVEACLVFEEMVS-RDAVSWNAIIAAHEQNGNEEKTLSLFIHNRII 457
Query: 161 --------YIDMELVDL---------AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
++ + L+D+ A ++ D + ++ +V W +++ G KQ EEA +
Sbjct: 458 KSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQK 517
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
F KM++ GV PD ++L C++L ++ G+ +H I++ + DA++ + L+DMYS
Sbjct: 518 TFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYS 577
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KCG++++ + F K +D VTW M+ G A +GLG EAL++F M+ + +KPN ATF++
Sbjct: 578 KCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLA 637
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
VL AC H GL+ +G F M Y + P +EH+ C+VD++ R+G + +A E I+ MP E
Sbjct: 638 VLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFE 697
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443
+ ++ LLS C + ++ +K A ++++L + AYVLLSN YA G W EV + R
Sbjct: 698 ADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLR 757
Query: 444 RNMKELQTRKKPGNSIIDLK 463
+ M+ +K+PG S I++K
Sbjct: 758 KMMRFNGLKKEPGCSWIEIK 777
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 112/453 (24%), Positives = 192/453 (42%), Gaps = 86/453 (18%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D N+++ Y A+ LFD MP RDV SWN+L+S Y D +V+ +F Q+
Sbjct: 107 DTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMG 166
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
G V D+ T ++ +C+ LE G +H A K+G + + +ALL MYAKCK++D
Sbjct: 167 RMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLD 226
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+++ F M +K+ V W +++ GCV+
Sbjct: 227 CSIQFFHSM--------------------------------PEKNWVSWSAIIAGCVQND 254
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
LELFK+M GV + SV +C+ LS L+ G +H L+ + D + T
Sbjct: 255 DLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGT 314
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA--NYGLG--------------- 299
A +DMY KC +L +A F ++ ++ +I G A + GLG
Sbjct: 315 ATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRACAV 374
Query: 300 ----NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM----------- 344
E L+V + + N ++L G + E C +F M
Sbjct: 375 IKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAI 434
Query: 345 -------------------GGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAE 383
+ + + ++ FV L+D+ S+ G++ +AE+ + AE
Sbjct: 435 IAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRL-AE 493
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+S+ A++S + + +K + M+++G
Sbjct: 494 QTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG 526
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 132/264 (50%), Gaps = 1/264 (0%)
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
++ K T +F C+ + L GK H + + + N L+ MY KC +++
Sbjct: 35 YQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLE 94
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A ++FD M +R+ VS N ++ GY + +A+++FD + ++D+V W S++ G +
Sbjct: 95 FAFKVFDGM-PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNG 153
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
+ +++F +M G D VL +CSSL + G +H ++ D +
Sbjct: 154 DHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGS 213
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
AL+DMY+KC L+ ++ F+ K+ V+W+ +I G L +F +M++ G+
Sbjct: 214 ALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGV 273
Query: 317 NEATFVSVLAACRHSGLITEGCQL 340
+++TF SV +C + G QL
Sbjct: 274 SQSTFASVFRSCAGLSALRLGSQL 297
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/438 (23%), Positives = 196/438 (44%), Gaps = 45/438 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IY 59
G +H K D D+ G++L+ Y + + F MP ++ SW+ +++ +
Sbjct: 193 GIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQ 252
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
ND G L LFK++ G+ + T +F +CA L L G +H +A K +
Sbjct: 253 NDDLRGG--LELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDV 310
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI----------------- 162
+ A L MY KC + +A +LF+ + N+ S N +I GY
Sbjct: 311 VIGTATLDMYMKCNNLSDAQKLFNSL-PNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAF 369
Query: 163 --------DMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
D+E + + + +I + +++ K EA +F++M V+
Sbjct: 370 RACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEM----VS 425
Query: 215 PDEEVMVSVLSACSSLSNLQ--YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
D ++++A N + +H I+++ + D+FV ALIDMYSKCG +E+A
Sbjct: 426 RDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAE 485
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
+ + VV+W +I G + EA + F +M G+ P+ T+ ++L C +
Sbjct: 486 KLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLV 545
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+ G Q+ + + + + + ++ LVD+ S+ G + + + P D F+++
Sbjct: 546 TVELGKQIHAQ---IIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRD-FVTWN 601
Query: 391 ALLSACITYSEFDLGKKV 408
A++ Y++ LG++
Sbjct: 602 AMVCG---YAQHGLGEEA 616
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 99/259 (38%), Gaps = 43/259 (16%)
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
++K P + L + + ++ + CS L G+ H ++ F
Sbjct: 19 QSKSPFKTLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVF 78
Query: 254 VKTALIDMYSKCGSLEEALVTF---YKTDC----------------------------KD 282
V LI MY KC LE A F + D +D
Sbjct: 79 VTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERD 138
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR----HSGLIT-EG 337
VV+W ++I G + G + + VF QM R G + TF VL +C H G I G
Sbjct: 139 VVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHG 198
Query: 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
L +MG + L+D+ ++ L + +F MP E ++S+ A+++ C+
Sbjct: 199 --LAVKMG----FDCDVVTGSALLDMYAKCKKLDCSIQFFHSMP-EKNWVSWSAIIAGCV 251
Query: 398 TYSEFDLGKKVANNMMKLG 416
+ G ++ M K G
Sbjct: 252 QNDDLRGGLELFKEMQKAG 270
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 156/452 (34%), Positives = 254/452 (56%), Gaps = 1/452 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K LHAH+ KT + + + F+ A+++F + +V WNT + + +
Sbjct: 32 KQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEG 91
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ + LF +L I D T + AC+RL + GK VH Y K+GL+ + ++
Sbjct: 92 DSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQ 151
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N ++ +YA C E+ A ++FD+M +R++++ NI+I + M + A ++F E+ ++++
Sbjct: 152 NMIVHLYALCGEIGVARKVFDKM-PQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNV 210
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W SM+ G + + +EA++LF +M D G+ P+E +V+VL AC+ + NL GR +H F
Sbjct: 211 RSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDF 270
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
++ ++ V LIDMY KCG LE+A F + + VV+W+ MI GLA +G +A
Sbjct: 271 SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDA 330
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F +M G+KPN TF+ +L AC H G++ +G + F M Y + P IEH+ C+VD
Sbjct: 331 LALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVD 390
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
L SRAGLL +A EFI MP + + ALL C + L ++ ++ KL +
Sbjct: 391 LFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGY 450
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKK 454
YV+LSN YA G W +VA R+ M++ T +K
Sbjct: 451 YVVLSNIYAEAGRWEDVARVRKLMRDRGTWEK 482
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 149/345 (43%), Gaps = 68/345 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWN-------- 53
GK +H +V K L S++++ N ++H Y AR +FDKMP RDV +WN
Sbjct: 132 GKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVK 191
Query: 54 -----------------------TLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+++ Y S E + LF ++ G++ +++T+V +
Sbjct: 192 MGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAV 251
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
ACA + L G+ +H ++ + G E + + N L+ MY KC +++A R+FD M R
Sbjct: 252 LVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEER-- 309
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+V W +M+ G + E+AL LF KMI+
Sbjct: 310 ------------------------------TVVSWSAMIAGLAAHGRAEDALALFNKMIN 339
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLE 269
GV P+ + +L ACS + ++ GR + ++ I ++D++S+ G L+
Sbjct: 340 TGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQ 399
Query: 270 EALVTFYKTD-CKDVVTWTTMIEGL---ANYGLGNEALRVFYQME 310
EA + V W ++ G N L EA R +++
Sbjct: 400 EAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKLD 444
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 1/173 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H ++ + +I V N+LI Y + DA +FD M R V SW+ +++
Sbjct: 263 LGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLA 322
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYML 119
+ + L LF ++I G+ + +T + + AC+ + + G+ T+ G+ +
Sbjct: 323 AHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRI 382
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLARE 172
++ ++++ + EA M N V L+ G + V LA E
Sbjct: 383 EHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEE 435
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 160/468 (34%), Positives = 255/468 (54%), Gaps = 35/468 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V KT + D+YVG L+ Y + D +F++MP DV W+ ++S Y
Sbjct: 160 VGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYA 219
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ S E + LF Q+ ++ ++ T + +CA +E L GK VHC+ KVGL+ +
Sbjct: 220 QSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVF 279
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ +YAKC +D +++LF MEL + +
Sbjct: 280 VSNALMDVYAKCGRLDNSMKLF---------------------MELPN-----------R 307
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ V W +M+ G V++ ++AL L+K M++ V E SVL AC+SL+ ++ G +H
Sbjct: 308 NEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIH 367
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
L+ +D V ALIDMY+KCGS++ A + F +D ++W MI G + +GL
Sbjct: 368 SLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVG 427
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL+ F M+ PN+ TFVS+L+AC ++GL+ G F+ M Y ++P +EH+ C+
Sbjct: 428 EALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCM 487
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
V LL R+G L +A + I+ +P E ++ALL AC+ +++ DLG A ++++ Q
Sbjct: 488 VWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDE 547
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID---LKHY 465
+VLLSN YA W VA R+ MK +K+PG S I+ + HY
Sbjct: 548 ATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHY 595
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/392 (27%), Positives = 185/392 (47%), Gaps = 36/392 (9%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LHA + K +S+ +VG +LI Y AR FD + +D+ SW +++ Y +
Sbjct: 63 LHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDR 122
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ L LF ++ G + T + AC LE GK+VH K E L +
Sbjct: 123 FQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVG 182
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
LL +Y K + ++ LR+F+EM D++
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKH--------------------------------DVIP 210
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W M+ ++ Q EA+ELF +M V P++ SVL +C+S+ NLQ G+ VH +L
Sbjct: 211 WSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVL 270
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ + + FV AL+D+Y+KCG L+ ++ F + ++ VTW TMI G G G++AL
Sbjct: 271 KVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALS 330
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR-RMGGVYRVQPTIEHFVCLVDL 363
++ M ++ +E T+ SVL AC + G Q+ + +Y + + L+D+
Sbjct: 331 LYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGN--ALIDM 388
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
++ G + A ++ D+ IS+ A++S
Sbjct: 389 YAKCGSIKNARLVFDMLSERDE-ISWNAMISG 419
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 141/300 (47%), Gaps = 9/300 (3%)
Query: 126 LLMYAKCKEMDEALR-LFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
LL+ +C E+ +L ++G N LI+ Y V+ AR+ FD I KD+V
Sbjct: 50 LLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVS 109
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W M+ + + +++L+LF +M G P+ VL AC L G+ VH +L
Sbjct: 110 WTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVL 169
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ D +V L+D+Y+K G + L F + DV+ W+ MI A EA+
Sbjct: 170 KTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVE 229
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG-GVYRVQPTIEHFV--CLV 361
+F QM R + PN+ TF SVL +C E QL +++ V +V FV L+
Sbjct: 230 LFGQMRRAFVLPNQFTFASVLQSCAS----IENLQLGKQVHCHVLKVGLDGNVFVSNALM 285
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+ ++ G L + + +P ++ +++ ++ + + D + NM++ Q+ E
Sbjct: 286 DVYAKCGRLDNSMKLFMELPNRNE-VTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASE 344
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 122/274 (44%), Gaps = 39/274 (14%)
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D++ V + +++ G V++ Q +E ++LF ++ EG + V ++L S+ +
Sbjct: 3 DRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYS 62
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H I + +AFV TALID Y+ CGS+ A F CKD+V+WT M+ A
Sbjct: 63 LHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDR 122
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAAC-----RHSGLITEGC--------------- 338
++L++F +M G PN TF VL AC G GC
Sbjct: 123 FQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVG 182
Query: 339 --QLFRRMGGVYRVQPTIEHF-----VCLVDLLSRAGLLYQAEEFIK---------IMPA 382
L+ + G V E + ++SR Q+ E ++ ++P
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPN 242
Query: 383 EDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ ++ ++L +C + LGK+V +++K+G
Sbjct: 243 Q---FTFASVLQSCASIENLQLGKQVHCHVLKVG 273
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 159/460 (34%), Positives = 249/460 (54%), Gaps = 2/460 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H K ++V N+L+H Y D+R FD+M R+V SWN+++ Y D
Sbjct: 67 VHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGD 126
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ E LF ++ +G + D+ TL L AC++ L +G+ VHC G L + A
Sbjct: 127 TREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGA 186
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MY+KC ++ A R F EM +++VS ++ VD AR FD + +++ V
Sbjct: 187 LVDMYSKCGDLCMARRCF-EMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVS 245
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ V+ Q EAL+L+K+M G PDE +V VLSAC + +L G++VH +I
Sbjct: 246 WNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIR 305
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
N D + +L+DMY+KCG ++ A+ F + ++VV+W +I GLA +G +A+
Sbjct: 306 DNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAIT 365
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
F M R P+ TFV++L++C H GL+ G F M VY V+ +EH+ C+VDLL
Sbjct: 366 FFRSMVRN-TSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLL 424
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
R G L +A IK MP + + + ALL AC + +GK+V +++L S +V
Sbjct: 425 GRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQLLELEGISGGLFV 484
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
L+SN W ++ R+ MKE TRK G S I++ +
Sbjct: 485 LISNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSIEINN 524
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 142/329 (43%), Gaps = 63/329 (19%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99
+FD + D +NT+ Y + E L L + ++ G++ ++ TL + AC R +
Sbjct: 1 MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
VH A K+G + + NALL YA + ++ R FDEM RN+VS N +I
Sbjct: 61 WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAG-RNVVSWNSMIG 119
Query: 160 GYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
GY +A EA LF +M +G DE
Sbjct: 120 GY-------------------------------AQAGDTREACALFGEMRRQGFLGDEFT 148
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279
+ S+L ACS NL++GRLVH +L + D + AL+DMYSKCG L A F
Sbjct: 149 LASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMP 208
Query: 280 CKDVVTWT-------------------------------TMIEGLANYGLGNEALRVFYQ 308
K VV+WT TMI G +EAL ++ Q
Sbjct: 209 IKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQ 268
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEG 337
M+ G P+EAT V VL+AC G +T G
Sbjct: 269 MQSHGPAPDEATLVPVLSACGRIGDLTVG 297
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 126/286 (44%), Gaps = 27/286 (9%)
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
+FD I+D D V++ ++ + P EAL L + M+ GV P+E + V+ AC+
Sbjct: 1 MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
VH L+ FV AL+ Y+ GSL ++ F + ++VV+W +MI G
Sbjct: 61 WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG-----------LITEGCQLF 341
A G EA +F +M R+G +E T S+L AC G ++ G +
Sbjct: 121 YAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVD 180
Query: 342 RRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
+GG LVD+ S+ G L A ++MP + +S+ ++L A +
Sbjct: 181 LILGGA------------LVDMYSKCGDLCMARRCFEMMPIK-SVVSWTSMLCAQTKHGS 227
Query: 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
D + ++M + S + + Y G + E + + M+
Sbjct: 228 VDAARCWFDHMPERNTVSWNTMI---SCYVQRGQYHEALDLYKQMQ 270
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 120/274 (43%), Gaps = 30/274 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H ++ + DI + NSL+ Y + A LF +M R+V SWN ++
Sbjct: 296 VGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLA 355
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKL----HYGKTV-HCYATKVGL 115
+ + + F+ ++ D IT V L S+C+ L HY +++ H Y K +
Sbjct: 356 MHGRALDAITFFRSMV-RNTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEV 414
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
E+ M + L + +++A+ L EM + ++V L+ V + ++V
Sbjct: 415 EHYACMVDLL----GRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIK 470
Query: 176 EIVDKD------IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
++++ + VL ++++ + Q E+ L K M + G D V
Sbjct: 471 QLLELEGISGGLFVLISNLLY---ETNQWEDMKRLRKLMKERGTRKDMGV---------- 517
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
S+++ +H F +++ + + A++D S
Sbjct: 518 -SSIEINNSIHEFGVEDIRHESSSEIYAVVDQLS 550
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 166/497 (33%), Positives = 263/497 (52%), Gaps = 40/497 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL-----FTDARVLFDKMPFRDVGSWNTLMS 57
K HA + +T D Y+ SL+ Y ++ F + +FD + +V WN ++
Sbjct: 52 KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 111
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ + ++ + ++L+ +++ +K T + AC+ + G VH + K GL
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGG 171
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM------------- 164
++ ++ + MYA + EA R+ D+ G + V N +I+GY+
Sbjct: 172 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 231
Query: 165 -------------------ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
+V++ARE FDE+ ++D + W +M+ G ++ EALE+F
Sbjct: 232 PDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIF 291
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+M E + P + V+ SVLSAC++L L GR +H + +N+I D + T+L+DMY+KC
Sbjct: 292 HQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC 351
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G ++ A F K K+V +W MI GLA +G +A+ +F +M+ I PNE TFV VL
Sbjct: 352 GRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNEITFVGVL 408
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
AC H GL+ +G +F M Y V+P IEH+ C+VDLL RAGLL +AE+ + +P E
Sbjct: 409 NACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPT 468
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
+ ALL AC + +LG++V +++L Q+ Y LLSN YA G W EV E R+
Sbjct: 469 PAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKL 528
Query: 446 MKELQTRKKPGNSIIDL 462
MKE + PG SIIDL
Sbjct: 529 MKERGIKTTPGTSIIDL 545
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 99/445 (22%), Positives = 168/445 (37%), Gaps = 138/445 (31%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYG-------------------------------- 29
G +HAH+ K L D ++ +S I Y
Sbjct: 157 GVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYL 216
Query: 30 RMALFTDARVLFDKMPFRD-VGSWNTLMS-------------IYNDFSDSGEV------- 68
R AR LF+ MP R + +WN ++S +++ + E+
Sbjct: 217 RFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMID 276
Query: 69 -----------LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
L +F Q+ E I K L + SACA L L G+ +H YA + ++
Sbjct: 277 GYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQL 336
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ +L+ MYAKC +D A +F++M S + + S N +I G
Sbjct: 337 DGVLGTSLVDMYAKCGRIDLAWEVFEKM-SNKEVSSWNAMIGGL---------------- 379
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
MHG + E+A++LF KM + P+E V VL+AC+ +G
Sbjct: 380 ----------AMHG-----RAEDAIDLFSKM---DIYPNEITFVGVLNACA------HGG 415
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
LV + + N + + I+ Y +++ L G
Sbjct: 416 LVQKGLTIFNSMRKEYGVEPQIEHYG------------------------CIVDLLGRAG 451
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV-YRVQPTIE- 355
L EA +V + +P A + ++L ACR G + +L R+G + ++P
Sbjct: 452 LLTEAEKVVSSIP---TEPTPAVWGALLGACRKHGNV----ELGERVGKILLELEPQNSG 504
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIM 380
+ L ++ ++AG + E K+M
Sbjct: 505 RYTLLSNIYAKAGRWEEVGEVRKLM 529
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 113/252 (44%), Gaps = 21/252 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + + ++ D +G SL+ Y + A +F+KM ++V SWN ++
Sbjct: 322 GRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAM 381
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLN 120
+ + + LF ++ I ++IT V + +ACA + G T+ + + G+E +
Sbjct: 382 HGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIE 438
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAREVFDEI 177
++ + + + EA ++ + + L+ + ++EL + ++ E+
Sbjct: 439 HYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLEL 498
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV--TPDEEVMVSVLSACSSLSNLQY 235
++ + + + KA + EE E+ K M + G+ TP +S+ +L
Sbjct: 499 EPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPG-----------TSIIDLGR 547
Query: 236 GRLVHRFILQNN 247
G VH+FI+ +
Sbjct: 548 GE-VHKFIIGDG 558
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 162/441 (36%), Positives = 241/441 (54%), Gaps = 37/441 (8%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N LI+ Y + L DA+ +FDKMP R+V SW T++S Y+ + + L ++ EG+
Sbjct: 4 NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
+ T + AC L L + +HC K+GL+ + + +AL+ +Y++ E++ ALR
Sbjct: 64 PNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALR- 119
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
VFDE+V D+V+W S++ G + +EA
Sbjct: 120 -------------------------------VFDEMVTGDLVVWSSIIAGFAQNSDGDEA 148
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L LFK+M G + + SVL AC+ L+ L+ GR VH +L+ + QD + AL+DM
Sbjct: 149 LRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYD--QDLILNNALLDM 206
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y KCGSLE+A F + KDV++W+TMI GLA G EAL++F M+ GIKPN T
Sbjct: 207 YCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTI 266
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
V VL AC H+GL+ EG F M ++ + P EH+ C++DLL RAG L +A + I M
Sbjct: 267 VGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEME 326
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
E ++++ALL+AC + D+ A +++L Q YVLLSN YA W +VAE
Sbjct: 327 CEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAE 386
Query: 442 ARRNMKELQTRKKPGNSIIDL 462
RR M +K+PG S I++
Sbjct: 387 VRRTMTNRGIKKEPGCSWIEV 407
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 111/187 (59%), Gaps = 3/187 (1%)
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
+NILIN Y+ L+ A++VFD++ D+++V W +M+ AK ++ALE M+ EGV
Sbjct: 3 INILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGV 62
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
P+ SVL AC L NL R +H I++ + D FV++ALID+YS+ G LE AL
Sbjct: 63 RPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALR 119
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F + D+V W+++I G A G+EALR+F +M+R G + T SVL AC L
Sbjct: 120 VFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLAL 179
Query: 334 ITEGCQL 340
+ G Q+
Sbjct: 180 LELGRQV 186
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 136/292 (46%), Gaps = 36/292 (12%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ LH + K LDSD++V ++LI Y R +A +FD+M D+ W+++++ +
Sbjct: 83 RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQN 142
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
SD E L LFK++ G +A + TL + AC L L G+ VH + K + +LN
Sbjct: 143 SDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILN-- 200
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
NALL MY KC +++ A VF +V+KD+
Sbjct: 201 NALLDMYCKCGSLED--------------------------------ANAVFVRMVEKDV 228
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHR 241
+ W +M+ G + +EAL+LF+ M G+ P+ +V VL ACS ++ G H
Sbjct: 229 ISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHS 288
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEG 292
I +ID+ + G L EA+ + +C+ D VTW ++
Sbjct: 289 MKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNA 340
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 9/166 (5%)
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
F+ LI+MY K G L +A F K ++VV+WTTMI + L ++AL M R+
Sbjct: 1 FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLL 370
G++PN T+ SVL AC GL L + + ++ + FV L+D+ SR G L
Sbjct: 61 GVRPNMFTYSSVLRAC--DGLFN----LRQLHCCIIKIGLDSDVFVRSALIDVYSRWGEL 114
Query: 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
A M D + + ++++ S+ D ++ M + G
Sbjct: 115 ENALRVFDEMVTGD-LVVWSSIIAGFAQNSDGDEALRLFKRMKRAG 159
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 9/185 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H HV K D D+ + N+L+ Y + DA +F +M +DV SW+T+++
Sbjct: 182 LGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLA 239
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLE 116
S E L LF+ + GI + +T+V + AC+ E L+Y H G++
Sbjct: 240 QNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYY---FHSMKELFGID 296
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
++ + + + EA+ L +EM + V+ L+N VD+A +
Sbjct: 297 PGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQ 356
Query: 177 IVDKD 181
I+ D
Sbjct: 357 ILRLD 361
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 157/460 (34%), Positives = 256/460 (55%), Gaps = 33/460 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+AH+ K LD D +V NSL+ + +R LF + +DV SW L++
Sbjct: 125 FYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGR 184
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLNMEN 123
+ E L F ++ G+ D++T+V + A A L + +G+ VH + + G + + + + +
Sbjct: 185 AVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGS 244
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ MY+KC D+A++ VF+E+ +++V
Sbjct: 245 ALVDMYSKCGYCDDAVK--------------------------------VFNEMPTRNLV 272
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W +++ G V+ + +EAL++F++MI EG+ P++ + S L+AC+ L +L GR +H ++
Sbjct: 273 SWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYV 332
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++ + ++ + TAL+DMYSKCG ++EAL+ F K KDV WT MI GLA G +L
Sbjct: 333 DRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSL 392
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
+F QM R ++PN TF+ VL+AC H GL+ EG +LFR M YR++P ++H+ C+VDL
Sbjct: 393 NLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDL 452
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L RAG L +A +FI+ MP E + AL S C+ + F+LG+ + N+++KL Y
Sbjct: 453 LGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRY 512
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+LL+N Y+ W A RR MK K P S I++
Sbjct: 513 ILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIEVN 552
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 182/349 (52%), Gaps = 35/349 (10%)
Query: 39 VLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE 98
+LFD++ + WNT++ ++ S VL+ + +L G++ D+ T +L A ++L
Sbjct: 59 LLFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLR 118
Query: 99 KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
+ + + + K GL++ ++N+L+ +A C +D + RLF E +++++VS
Sbjct: 119 NENPFQ-FYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIET-AKKDVVS----- 171
Query: 159 NGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE 218
W ++++GC++ + EALE F +M GV DE
Sbjct: 172 --------------------------WTALINGCLRNGRAVEALECFVEMRSSGVEVDEV 205
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNN-ITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
+VSVL A + L ++ +GR VH F +++ + D +V +AL+DMYSKCG ++A+ F +
Sbjct: 206 TVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNE 265
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+++V+W +I G EAL+VF +M +GI+PN++T S L AC G + +G
Sbjct: 266 MPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQG 325
Query: 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
L + ++ + LVD+ S+ G + +A + +PA+D +
Sbjct: 326 RWLHEYVDRS-KLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVY 373
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 121/256 (47%), Gaps = 10/256 (3%)
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
+FD + I LW +++ + QP+ L + ++ + GV PD +L A S L N
Sbjct: 60 LFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
+ + I++ + DAFV+ +L+ ++ CG ++ + F +T KDVV+WT +I G
Sbjct: 120 ENPFQF-YAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY---- 348
G EAL F +M G++ +E T VSVL A + R + G Y
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCA----AAMLRDVWFGRWVHGFYVESG 234
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
RV + LVD+ S+ G A + MP + +S+ AL++ + + + KV
Sbjct: 235 RVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRN-LVSWGALIAGYVQCNRYKEALKV 293
Query: 409 ANNMMKLGNQSHEAYV 424
M+ G + +++ V
Sbjct: 294 FQEMIIEGIEPNQSTV 309
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 51/94 (54%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH +V ++ L + +G +L+ Y + +A ++F+K+P +DV W +++
Sbjct: 325 GRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAM 384
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
D+ L LF Q+I + + +T + + SACA
Sbjct: 385 RGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACA 418
>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 156/464 (33%), Positives = 242/464 (52%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ + +H H KT +D +V +LI Y + +A LF D+ WN +M Y
Sbjct: 1024 ISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYI 1083
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+D + L LF + G +D+ITL AC L L GK +H +A K G + L+
Sbjct: 1084 IGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLH 1143
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ + +L MY KC +M +N I VF+ I
Sbjct: 1144 VNSGILDMYIKCGDM----------------------VNAGI----------VFNYISAP 1171
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V W SM+ GCV ++AL ++ +M V PDE +++ A S ++ L+ GR +H
Sbjct: 1172 DDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLH 1231
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + D FV T+L+DMY+KCG++E+A F K + +++ W M+ GLA +G
Sbjct: 1232 ANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAE 1291
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EA+ +F M+ GI+P+ +F+ +L+AC H+GL +E + M Y ++P IEH+ CL
Sbjct: 1292 EAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCL 1351
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD L RAGL+ +A++ I+ MP + +ALL AC + + GK+VA + L
Sbjct: 1352 VDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDS 1411
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
AYVLLSN YA W +V +AR+ MK +K PG S ID+K+
Sbjct: 1412 AAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKN 1455
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 114/427 (26%), Positives = 194/427 (45%), Gaps = 57/427 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK HA + + D ++ N+L+ Y + + AR +FD P RD+ +WN ++ Y
Sbjct: 639 LGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYA 698
Query: 61 DFSDSG-----EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
DS E L LF+ L ++TL + C L + VH YA K+GL
Sbjct: 699 ASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGL 758
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
E+ + + AL+ +Y+KC M +A LFD M R++V N+++ GY+ + L A ++F
Sbjct: 759 EWDVFVSGALVNIYSKCGRMRDARLLFDWM-RERDVVLWNMMLKGYVQLGLEKEAFQLFS 817
Query: 176 E------------------------------IVDK---------------DIVLWRSMMH 190
E + D+ D+ W +
Sbjct: 818 EFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLS 877
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
C+ A A+E F M + D ++ VL+A + +L+ G+ VH +++ +
Sbjct: 878 ECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDS 937
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
D V +L++MYSK G A F D+++W +MI A L E++ +F +
Sbjct: 938 DVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLL 997
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG-GVYRVQPTIEHFVC--LVDLLSRA 367
+G+KP+ T SVL AC S LI +G + R++ + + FV L+D+ S++
Sbjct: 998 HEGLKPDHFTLASVLRAC--SSLI-DGLNISRQIHVHALKTGNIADSFVATTLIDVYSKS 1054
Query: 368 GLLYQAE 374
G + +AE
Sbjct: 1055 GKMEEAE 1061
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 172/380 (45%), Gaps = 45/380 (11%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99
L D P DV WN +S D+ + F + I D +TL+++ +A A +
Sbjct: 862 LSDDNP--DVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDD 919
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
L GK VH A K GL+ +++ N+L+ MY+K
Sbjct: 920 LELGKQVHGIAVKSGLDSDVSVANSLVNMYSK---------------------------- 951
Query: 160 GYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
M AREVF+++ D++ W SM+ C ++ EE++ LF ++ EG+ PD
Sbjct: 952 ----MGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFT 1007
Query: 220 MVSVLSACSSL-SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
+ SVL ACSSL L R +H L+ D+FV T LID+YSK G +EEA F
Sbjct: 1008 LASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNK 1067
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338
D D+ W M+ G G +AL +F + + G K ++ T + AC L+ +G
Sbjct: 1068 DDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGK 1127
Query: 339 QLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
Q+ + ++ + + ++D+ + G + A + A D +++ +++S
Sbjct: 1128 QIH-----AHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDD-VAWTSMIS 1181
Query: 395 ACITYSEFDLGKKVANNMMK 414
C+ D ++ + M +
Sbjct: 1182 GCVDNGNEDQALRIYHRMRQ 1201
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 14/171 (8%)
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
+L S NL G+ H I+ + D F+ L+ MYSKCGSL A F T +D
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686
Query: 283 VVTWTTMIEGLA-----NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI--T 335
+VTW ++ A N G E L +F + T VL C +SG +
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746
Query: 336 EGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAED 384
EG G ++ + FV LV++ S+ G + A M D
Sbjct: 747 EGVH-----GYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERD 792
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 163/497 (32%), Positives = 263/497 (52%), Gaps = 38/497 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK HA +LD D +G+S+I+FY ++ L DA ++F +M +DV +WN L+S Y
Sbjct: 302 GKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQ 361
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
G+ L + + E + D +TL + SA A + GK HCY + LE + +
Sbjct: 362 HHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVV 421
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSR--------------------------------- 148
N+++ MYAKC+ +D+A ++FD R
Sbjct: 422 ANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSV 481
Query: 149 -RNIVSLNILINGYIDMELVDLAREVFDEI----VDKDIVLWRSMMHGCVKAKQPEEALE 203
N++S N +I G++ V+ A+++F ++ +++ W +++ G ++ EA+
Sbjct: 482 PPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAIL 541
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
F+KM + G+ P + SVL AC+ + +L YGR +H FI ++ V T+L+DMY+
Sbjct: 542 FFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYA 601
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KCGS++EA F+ K++ + MI A +G EAL +F ++++GI+P+ TF S
Sbjct: 602 KCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTS 661
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
+L+AC H+GL+ EG LF M + + P +EH+ C+V LLSR G L +A I MP +
Sbjct: 662 ILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQ 721
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443
+LL+AC + E +LG+ ++ ++ KL + YV LSN YA G W EV+ R
Sbjct: 722 PDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMR 781
Query: 444 RNMKELQTRKKPGNSII 460
MK RK PG S I
Sbjct: 782 DLMKVRGLRKNPGCSWI 798
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 203/411 (49%), Gaps = 36/411 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GKG+H +V K + ++V +SL+ YG+ + DAR +FD M ++V +WN+++ Y
Sbjct: 200 LGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYV 259
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E + +F + EGI ++T+ SA A L+ L GK H A +LN
Sbjct: 260 QNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIA-------ILN 312
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+L L + +GS +IN Y + L++ A VF +++K
Sbjct: 313 -----------------SLDLDNILGSS--------IINFYSKVGLIEDAELVFSRMLEK 347
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W ++ V+ Q +AL + M E + D + S+LSA + SN++ G+ H
Sbjct: 348 DVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGH 407
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ ++ N+ D V ++IDMY+KC +++A F T +D+V W T++ A GL
Sbjct: 408 CYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSG 467
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL++FYQM+ + PN ++ SV+ +G + E +F +M + QP + + L
Sbjct: 468 EALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSL-GFQPNLITWTTL 526
Query: 361 VDLLSRAGLLYQAEEFIKIMPA---EDKFISYKALLSACITYSEFDLGKKV 408
+ L+++G Y+A F + M S ++L AC G+ +
Sbjct: 527 ISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAI 577
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 118/252 (46%), Gaps = 34/252 (13%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLN--MENALLLMYAKCKEMDEALRLFDEMGS 147
L C LH G+ +H K G + N +E L++ YAKC + A+RLF +
Sbjct: 85 LLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRL-R 143
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
RN+ S W +++ + E+AL F +
Sbjct: 144 VRNVFS-------------------------------WAAIVGLQCRMGFSEDALLGFIE 172
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M + GV PD V+ +VL AC SL + G+ VH ++L+ FV ++L+DMY KCG
Sbjct: 173 MQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGV 232
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
LE+A F K+VVTW +MI G GL EA+ VFY M +GI+P T S L+A
Sbjct: 233 LEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSA 292
Query: 328 CRHSGLITEGCQ 339
+ + EG Q
Sbjct: 293 SANLDALIEGKQ 304
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 163/460 (35%), Positives = 258/460 (56%), Gaps = 5/460 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H T L S Y+ N+LI Y L A +F+KMP D+ S+N ++ Y
Sbjct: 83 KQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKK 142
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT--KVGLEYMLN 120
E + LF +++ G+ D+ T++ L +C +L + +GK VH + K + L
Sbjct: 143 GFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLI 202
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NALL MY KC++++ ALR F + ++IVS N+++ G + ++ AR F ++ +
Sbjct: 203 LGNALLDMYVKCQKVELALRTFGAL-KEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCR 261
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIV W S++ G EL M+ E V PD M+S++SA + L GR H
Sbjct: 262 DIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAH 321
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++++ I DAF+ +ALIDMY KCGS+E A F + + KDV WTTMI GLA +G G+
Sbjct: 322 GWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFHGYGS 381
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL +F +M+ + P++ TFVSVL+AC HSGL+ +G ++F M Y ++P +EH+ CL
Sbjct: 382 KALELFSEMQED-VSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTD-YGIEPGVEHYGCL 439
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL+R+G L +A++ I MP + + A+L+AC + +L + + ++ L +
Sbjct: 440 VDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNLDPEEE 499
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
Y LLSN YA G W+ + R M+ +K G S +
Sbjct: 500 GGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSV 539
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 5/178 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ H V + + D ++G++LI Y + A +F ++ +DV W T+++
Sbjct: 317 GRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAF 376
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L LF ++ E + D +T V + SAC+ + G V T G+E +
Sbjct: 377 HGYGSKALELFSEMQ-EDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTDYGIEPGVEH 435
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN---GYIDMELVDLA-REVFD 175
L+ + A+ + EA + D+M + + ++N D+EL ++A RE+ +
Sbjct: 436 YGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLN 493
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 165/462 (35%), Positives = 238/462 (51%), Gaps = 32/462 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H+ V K ++D +V SLI+ Y + +A +FD +P ++ SW +S Y
Sbjct: 126 LGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYV 185
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E + +F++L+ G+ D +LV + SAC R L G+ + Y T+ G+ +
Sbjct: 186 GVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVF 245
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ Y KC M+ A R VFD +++K
Sbjct: 246 VATALVDFYGKCGNMERA--------------------------------RSVFDGMLEK 273
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+IV W SM+ G P+EAL+LF KM++EG+ PD MV VL +C+ L L+ G
Sbjct: 274 NIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWAS 333
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I N ++ + TALIDMY+KCG ++ A F KD V W I GLA G
Sbjct: 334 NLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVK 393
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL +F QME+ GIKP+ TFV +L AC H+GL+ EG + F M V+ + P IEH+ C+
Sbjct: 394 DALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCM 453
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +A + IK MP E I + ALL C + + L + V ++ L
Sbjct: 454 VDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHS 513
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA W E A+ R M E +K PG S I++
Sbjct: 514 GNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEV 555
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 192/393 (48%), Gaps = 39/393 (9%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IYN 60
K +HA + + LD D Y+ N ++ F + + D+ ++ +NT++ + N
Sbjct: 27 KHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLN 86
Query: 61 D-FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
D F +S E+ + + EG+ D T + ACAR+ G +H K G E
Sbjct: 87 DCFQESIEI---YHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADA 143
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ +L+ +Y KC +D A + VFD+I D
Sbjct: 144 FVKISLINLYTKCGFIDNAFK--------------------------------VFDDIPD 171
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K+ W + + G V + EA+++F+++++ G+ PD +V VLSAC +L+ G +
Sbjct: 172 KNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWI 231
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
+I +N + ++ FV TAL+D Y KCG++E A F K++V+W++MI+G A+ GL
Sbjct: 232 DEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLP 291
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL +F++M +G+KP+ V VL +C G + G + G + ++
Sbjct: 292 KEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLG-TA 350
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392
L+D+ ++ G + +A E + M +D+ + A+
Sbjct: 351 LIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAI 383
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 130/264 (49%), Gaps = 14/264 (5%)
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
+ D+ + +I L+ +M+ G V +E++E++ M EG++PD VL AC+ + +
Sbjct: 64 ILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLD 123
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
+ G +H +++ DAFVK +LI++Y+KCG ++ A F K+ +WT I G
Sbjct: 124 SELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISG 183
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL--FRRMGGVYRV 350
G EA+ +F ++ G++P+ + V VL+AC+ +G + G + + G+ R
Sbjct: 184 YVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVR- 242
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
+ LVD + G + +A M E +S+ +++ Y+ L K+ +
Sbjct: 243 --NVFVATALVDFYGKCGNMERARSVFDGM-LEKNIVSWSSMIQG---YASNGLPKEALD 296
Query: 411 NMMKLGNQSHEAYVLLSNFYALEG 434
K+ N+ L + YA+ G
Sbjct: 297 LFFKMLNEG-----LKPDCYAMVG 315
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 163/487 (33%), Positives = 250/487 (51%), Gaps = 60/487 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
MGK +H K L SD++V N+L+ Y AR+LFDKM RDV SW+T++ Y
Sbjct: 127 MGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYI 186
Query: 60 ------------------------NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
ND + GE L F ++I E + + IT++ L +C
Sbjct: 187 TLFYGFSQRSIVSWTAMIAGYIRCNDLEE-GERL--FVRMIEENVFPNDITMLSLIISCG 243
Query: 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLN 155
+ + GK +H Y + G L + AL+ MY KC E+ A
Sbjct: 244 FVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSA----------------- 286
Query: 156 ILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215
R +FD + +KD++ W +M+ +A + A +LF +M D GV P
Sbjct: 287 ---------------RAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRP 331
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
+E MVS+LS C+ L G+ H +I + + D +KTALIDMY+KCG + A F
Sbjct: 332 NELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLF 391
Query: 276 YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335
+ +D+ TW M+ G +G G +AL++F +ME G+KPN+ TF+ L AC H+GL+
Sbjct: 392 SEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVV 451
Query: 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
EG LF +M + + P +EH+ C+VDLL RAGLL +A + I+ MP + A+L+A
Sbjct: 452 EGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAA 511
Query: 396 CITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKP 455
C + ++G+ A ++ L Q+ VL+SN YA W +VA R+ +K+ +K+P
Sbjct: 512 CKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEP 571
Query: 456 GNSIIDL 462
G S I++
Sbjct: 572 GMSSIEV 578
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 139/258 (53%), Gaps = 10/258 (3%)
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL 139
I D + + AC+++ GK +H ++ K GL + + NAL+ MY++C + A
Sbjct: 105 IEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSAR 164
Query: 140 RLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
LFD+M S R++VS + +I YI + F + IV W +M+ G ++ E
Sbjct: 165 LLFDKM-SERDVVSWSTMIRAYITL---------FYGFSQRSIVSWTAMIAGYIRCNDLE 214
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
E LF +MI+E V P++ M+S++ +C + +Q G+ +H +IL+N + TAL+
Sbjct: 215 EGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALV 274
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
DMY KCG + A F KDV+TWT MI A + A ++F QM G++PNE
Sbjct: 275 DMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNEL 334
Query: 320 TFVSVLAACRHSGLITEG 337
T VS+L+ C +G + G
Sbjct: 335 TMVSLLSLCAVNGALDMG 352
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 114/246 (46%), Gaps = 38/246 (15%)
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
P AL + M + D ++ SVL ACS +S + G+ +H F ++N + D FV
Sbjct: 89 HPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVN 148
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN--YGLGNEAL----------- 303
AL+ MYS+CGSL A + F K +DVV+W+TMI YG ++
Sbjct: 149 ALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYI 208
Query: 304 ---------RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL----FRRMGGVYRV 350
R+F +M + + PN+ T +S++ +C G + G +L R G+
Sbjct: 209 RCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLA 268
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA-----CITYSEFDLG 405
T LVD+ + G + A M +D +++ A++SA CI Y+ F L
Sbjct: 269 LAT-----ALVDMYGKCGEIRSARAIFDSMKNKD-VMTWTAMISAYAQANCIDYA-FQLF 321
Query: 406 KKVANN 411
++ +N
Sbjct: 322 VQMRDN 327
>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 654
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 267/462 (57%), Gaps = 2/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V +T D+D++V N+LI +Y + +R +FD+M RDV SWN+++S Y+
Sbjct: 144 LGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYS 203
Query: 61 DFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ L+++++ F G + +T+V + AC + + L +G VH + +E +
Sbjct: 204 QGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDI 263
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ NAL+ +YAKC +D A LFDEM S ++ V+ +I+G + VD + E+F +
Sbjct: 264 SVCNALIGLYAKCGSLDYARELFDEM-SEKDEVTYGAIISGLMLHGYVDQSLELFRGMKT 322
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+ + W +++ G V+ + E L+L ++M G P+ + SVLS + S+L+ G+ +
Sbjct: 323 QILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEI 382
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + ++ ++ +V TA+IDMY+K G L A F ++ + +V WT +I A +G
Sbjct: 383 HSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDA 442
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
N AL +F++M ++GI+P+ TF +VLAAC H G++ + ++F M Y +QP +EH+ C
Sbjct: 443 NLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYAC 502
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+V L +A L +A+EF+ MP E + ALL S+ +LGK V + + ++ ++
Sbjct: 503 VVGALGKARRLSEAKEFVSKMPIEPSAKVWGALLHGASISSDVELGKSVCDYLFEIEPEN 562
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YV+++N Y+ G W E E R M ++ +K PG+S I+
Sbjct: 563 TGNYVIMANLYSQAGRWKEADEVRERMNKVGLQKIPGSSWIE 604
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 117/450 (26%), Positives = 208/450 (46%), Gaps = 67/450 (14%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LHA + ++ + Y+ + L+ Y + AR +FD++P ++ S+N ++ Y+
Sbjct: 43 AKQLHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSL 102
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACAR--LEKLHYGKTVHCYATKVGLEYML 119
+ G+ L LF L +V + I++ L + + L + GK VH + + G + +
Sbjct: 103 HNRHGDALDLFSSLASSNLV-NNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADV 161
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ENAL+ Y+KC ++D + ++FD M ++R++VS N +I+GY L
Sbjct: 162 FVENALITYYSKCYDLDLSRKVFDRM-TKRDVVSWNSMISGYSQGGLY------------ 208
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRL 238
E+ L+++M+D G P+ +VSVL AC +L +G
Sbjct: 209 -------------------EDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGME 249
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH+FI+ N + D V ALI +Y+KCGSL+ A F + KD VT+ +I GL +G
Sbjct: 250 VHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGY 309
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSG---LITEGCQLFRRMGGVY--RVQPT 353
+++L +F M+ + + A ++ RH G L+ E L R V V T
Sbjct: 310 VDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLST 369
Query: 354 IEHFVCL-------------------------VDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
I +F L +D+ +++G L A+ + +
Sbjct: 370 IAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFD-QSKDRSLVI 428
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQ 418
+ A++SA + + +L + + M+K G Q
Sbjct: 429 WTAIISAYAVHGDANLALGLFHEMLKQGIQ 458
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 158/455 (34%), Positives = 247/455 (54%), Gaps = 35/455 (7%)
Query: 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEV 68
V T D Y+ +L+ F M+ A +F ++ ++ +WNT++ Y + +
Sbjct: 68 VPLTNPDMGKYLIFTLLSFCSPMSY---AHQIFSQIQNPNIFTWNTMIRGYAESENPMPA 124
Query: 69 LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
L L++Q+ I D T L A A+L + G+ VH A + G E ++ ++N L+ M
Sbjct: 125 LELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHM 184
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
YA C + A +LF+ M ++++V W S+
Sbjct: 185 YAACGHAESAHKLFELMA--------------------------------ERNLVTWNSV 212
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
++G +P EAL LF++M GV PD MVS+LSAC+ L L GR H ++++ +
Sbjct: 213 INGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGL 272
Query: 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
+ AL+D+Y+KCGS+ +A F + + K VV+WT++I GLA G G EAL +F +
Sbjct: 273 DGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKE 332
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
+ERKG+ P+E TFV VL AC H G++ EG F+RM Y + P IEH+ C+VDLL RAG
Sbjct: 333 LERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAG 392
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428
L+ QA EFI+ MP + + ++ LL AC + LG+ +++L + YVLLSN
Sbjct: 393 LVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSN 452
Query: 429 FYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YA E W++V + RR M +K PG+S+++L+
Sbjct: 453 LYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELR 487
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 143/316 (45%), Gaps = 37/316 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+ + +S ++V N+L+H Y A LF+ M R++ +WN++++ Y
Sbjct: 159 GEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYAL 218
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF+++ G+ D T+V L SACA L L G+ H Y KVGL+ L+
Sbjct: 219 NGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHA 278
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL +YAKC + +A ++FDEM +K
Sbjct: 279 GNALLDLYAKCGSIRQAHKVFDEME--------------------------------EKS 306
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVH 240
+V W S++ G +EALELFK++ +G+ P E V VL ACS + G
Sbjct: 307 VVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFK 366
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYG-- 297
R + I ++D+ + G +++A + + V W T++ +G
Sbjct: 367 RMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHL 426
Query: 298 -LGNEALRVFYQMERK 312
LG A Q+E K
Sbjct: 427 ALGEVARAQLLQLEPK 442
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 137/287 (47%), Gaps = 19/287 (6%)
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL------A 170
Y+L ALLL C R R + N + Y+ L+ A
Sbjct: 37 YILKKCIALLL---SCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYA 93
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230
++F +I + +I W +M+ G +++ P ALEL+++M + PD +L A + L
Sbjct: 94 HQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKL 153
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
+++ G VH ++N FV+ L+ MY+ CG E A F +++VTW ++I
Sbjct: 154 MDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVI 213
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
G A G NEAL +F +M +G++P+ T VS+L+AC G + G R VY V
Sbjct: 214 NGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALG-----RRAHVYMV 268
Query: 351 QPTIEHFV----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
+ ++ + L+DL ++ G + QA + M E +S+ +L+
Sbjct: 269 KVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEM-EEKSVVSWTSLI 314
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 36/196 (18%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G+ H ++ K LD +++ GN+L+ Y + A +FD+M + V SW +L+
Sbjct: 259 LGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLA 318
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N F E L LFK+L +G++ +IT V + AC+ HC G +Y
Sbjct: 319 VNGFGK--EALELFKELERKGLMPSEITFVGVLYACS-----------HCGMVDEGFDYF 365
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI- 177
M+ +E G I +++ LV A E +
Sbjct: 366 KRMK--------------------EEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMP 405
Query: 178 VDKDIVLWRSMMHGCV 193
+ + V+WR+++ C
Sbjct: 406 MQPNAVVWRTLLGACT 421
>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
Length = 732
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 173/532 (32%), Positives = 271/532 (50%), Gaps = 70/532 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA+V + + D+ V N LI FY + R LFD+M +++ SW T++S Y
Sbjct: 157 GKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQ 216
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E + LF ++ G D + ++C LE L G+ VH Y K LE +
Sbjct: 217 NSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFV 276
Query: 122 ENALLLMYAKC-------------------------------KEMDEALRLFDEMGSR-- 148
+N L+ MYAK +++ EAL LF EM R
Sbjct: 277 KNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLF 336
Query: 149 -------------------------------RNIVSLNI-----LINGYIDMELVDLARE 172
+ VSL++ LI+ Y V AR
Sbjct: 337 PPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARH 396
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
VF+E+ +KDIV+W +M G + + EEAL+L+ + P+E ++++A S+L++
Sbjct: 397 VFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLAS 456
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L++G+ H +++ + FV AL+DMY+KCGS+EEA F + +DVV W +MI
Sbjct: 457 LRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMIST 516
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
A +G EAL +F +M ++GI+PN TFV+VL+AC H+G + +G F M G + ++P
Sbjct: 517 HAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPG-FGIKP 575
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
EH+ C+V LL R+G L++A+EFI+ MP E I +++LLSAC +LGK A
Sbjct: 576 GTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMA 635
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ + +Y+LLSN +A +G W +V + R M + K+PG S I++ +
Sbjct: 636 ISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNN 687
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 167/325 (51%), Gaps = 32/325 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH V ++ D D+YVG SLI FY + AR++FD++ + +W T+++ Y
Sbjct: 56 GAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTK 115
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S L LF Q+ +V D+ + + SAC+ LE L GK +H Y + G E +++
Sbjct: 116 CGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSV 175
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L+ Y KC + +LFD+M +NI+S +I+GY+ + FD
Sbjct: 176 VNVLIDFYTKCNRVKAGRKLFDQM-VVKNIISWTTMISGYM--------QNSFD------ 220
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
W EA++LF +M G PD SVL++C SL L+ GR VH
Sbjct: 221 ---W--------------EAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHA 263
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ ++ N+ + FVK LIDMY+K L +A F ++V+++ MIEG ++ +E
Sbjct: 264 YTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSE 323
Query: 302 ALRVFYQMERKGIKPNEATFVSVLA 326
AL +F++M + P+ TFVS+L
Sbjct: 324 ALELFHEMRVRLFPPSLLTFVSLLG 348
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 167/348 (47%), Gaps = 46/348 (13%)
Query: 54 TLMSIYNDFSDSG---EVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCY 109
T M D D G E L++F L + G ++ L + AC +L + G +H +
Sbjct: 3 TGMQKTKDMEDEGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGF 62
Query: 110 ATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169
+ G + + + +L+ Y+K NG I+ +
Sbjct: 63 VVRSGFDQDVYVGTSLIDFYSK---------------------------NGBIE-----V 90
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
AR VFD++++K V W +++ G K + +LELF +M + V PD V+ SVLSACS
Sbjct: 91 ARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSM 150
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
L L+ G+ +H ++L+ D V LID Y+KC ++ F + K++++WTTM
Sbjct: 151 LEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTM 210
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I G EA+++F +M R G KP+ SVL +C + +G Q+ Y
Sbjct: 211 ISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVH-----AYT 265
Query: 350 VQPTIE--HFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
++ +E FV L+D+ +++ LL A++ +M AE ISY A++
Sbjct: 266 IKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVM-AEQNVISYNAMI 312
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 32/236 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H + K + D++ G++LI Y + + DAR +F++M +D+ WN + Y
Sbjct: 358 LSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYT 417
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ E L L+ L F ++ T L +A + L L +G+ H K+GL++
Sbjct: 418 QHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPF 477
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC ++E AR++F+ + +
Sbjct: 478 VTNALVDMYAKCGSIEE--------------------------------ARKMFNSSIWR 505
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
D+V W SM+ + + EEAL +F++M+ EG+ P+ V+VLSACS ++ G
Sbjct: 506 DVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDG 561
>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Vitis vinifera]
Length = 629
Score = 284 bits (726), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 154/468 (32%), Positives = 255/468 (54%), Gaps = 38/468 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H + K L+ D+++G++L++ Y + L A+V F+++P RDV WN +++ Y
Sbjct: 156 KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 215
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
VL F+++ E +V + T+ + S A + L+ G+ +H +A K+G + + +
Sbjct: 216 GQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 275
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N+L+ MY KCK +++AL E+F+ + +KDI
Sbjct: 276 NSLIDMYGKCKCIEDAL--------------------------------EIFEMMREKDI 303
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W S++ + + L L +M+ G+ PD + +VL ACS L+ L +GR +H +
Sbjct: 304 FSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGY 363
Query: 243 ILQNNITQDA------FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
++ + + +D +K A+IDMY+KCGS+ +A + F + KDV +W MI G +
Sbjct: 364 MIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMH 423
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G GNEAL +F +M +KP+E TFV VL+AC H+G +++G +M Y V PTIEH
Sbjct: 424 GYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEH 483
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C++D+L RAG L +A E MP E + ++ALL+AC + L + A + +L
Sbjct: 484 YTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELE 543
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ +YVL+SN Y G + EV E R M++ RK PG S I+LK+
Sbjct: 544 PEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKN 591
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 134/281 (47%), Gaps = 47/281 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K DS + V NSLI YG+ DA +F+ M +D+ SWN+++S++
Sbjct: 256 GRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQ 315
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL------ 115
D L L +++ GI D +T+ + AC+ L L +G+ +H Y GL
Sbjct: 316 CGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKD 375
Query: 116 -EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF 174
+ +L ++NA++ MYAKC M +A +F+ M S +++ S NI+I GY
Sbjct: 376 IDDVL-LKNAVIDMYAKCGSMRDAHLVFERM-SNKDVASWNIMIMGY------------- 420
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
MHG EALE+F +M + + PDE V VLSACS +
Sbjct: 421 -------------GMHG-----YGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVS 462
Query: 235 YGRLVHRFILQNNITQDAFVK----TALIDMYSKCGSLEEA 271
GR F++Q D T +IDM + G L+EA
Sbjct: 463 QGR---NFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEA 500
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 144/339 (42%), Gaps = 46/339 (13%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T + A A + L GK +H Y G +L+ MY+KC +M+ AL +F +
Sbjct: 39 TCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDP 98
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
N+ + N +I+G+I PEE E +
Sbjct: 99 THEINVFAFNAIISGFITNGF-------------------------------PEEGFEFY 127
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+KM +EGV PD+ + AC + + + +H + + + D F+ +AL++ Y K
Sbjct: 128 QKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYLKF 184
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G +E A V F + +DVV W M+ G A G L F +M + + P+ T VL
Sbjct: 185 GLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVL 244
Query: 326 AACR-----HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
+ ++G I G + +MG Y + + L+D+ + + A E ++M
Sbjct: 245 SVFAVMGDLNNGRIIHGFAM--KMG--YDSGVAVSN--SLIDMYGKCKCIEDALEIFEMM 298
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+D F S+ +++S + D ++ + M+ G Q
Sbjct: 299 REKDIF-SWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQP 336
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 284 bits (726), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 155/463 (33%), Positives = 256/463 (55%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
M + LH+ + K ++SD++V L+ Y + L DAR+ F+ +P +D+ +WN ++S Y+
Sbjct: 350 MKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYS 409
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + E L LF ++ EGI ++ TL + + A L+ +H + VH + K G +
Sbjct: 410 QYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIY 469
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ Y KC +++ A +F+E
Sbjct: 470 VVNSLIDSYGKCSHVED--------------------------------AERIFEECTIG 497
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V + SM+ + Q EEAL+LF +M D + PD V S+L+AC++LS + G+ +H
Sbjct: 498 DLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLH 557
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
IL+ D F +L++MY+KCGS+++A F + + +V+W+ MI GLA +G G
Sbjct: 558 VHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGR 617
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL++F QM ++G+ PN T VSVL AC H+GL+TE F M ++ +P EH+ C+
Sbjct: 618 QALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACM 677
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLL RAG + +A E + MP E + ALL A + + +LG++ A + L +
Sbjct: 678 IDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKS 737
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLL+N YA G W VAE RR M++ + +K+PG S I++K
Sbjct: 738 GTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVK 780
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 134/497 (26%), Positives = 241/497 (48%), Gaps = 55/497 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V + + D++V N+L+ Y + F D++ LFD++P R+V SWN L S Y
Sbjct: 175 IGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYV 234
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
GE + LF +++ GI ++ +L + +AC L GK +H Y K+G ++
Sbjct: 235 QXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPF 294
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI------------------ 162
NAL+ MYAK ++ +A+ +F+++ + +IVS N +I G +
Sbjct: 295 SANALVDMYAKVGDLADAISVFEKI-KQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQ 353
Query: 163 --------DME--------LVDL---------AREVFDEIVDKDIVLWRSMMHGCVKAKQ 197
DME LVD+ AR F+ + +KD++ W +++ G + +
Sbjct: 354 LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWE 413
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
EAL LF +M EG+ ++ + ++L + + L + R VH +++ D +V +
Sbjct: 414 DMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNS 473
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LID Y KC +E+A F + D+V++T+MI A YG G EAL++F +M+ +KP+
Sbjct: 474 LIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPD 533
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEE 375
S+L AC + +G QL + + ++ F LV++ ++ G + A
Sbjct: 534 RFVCSSLLNACANLSAFEQGKQLHVH---ILKYGFVLDIFAGNSLVNMYAKCGSIDDAGR 590
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
+ E +S+ A++ + ++ N M+K G + ++ L + H
Sbjct: 591 AFSEL-TERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPN--HITLVSVLGACNH 647
Query: 436 WTEVAEAR---RNMKEL 449
V EA+ +M+EL
Sbjct: 648 AGLVTEAKLYFESMEEL 664
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/402 (28%), Positives = 187/402 (46%), Gaps = 65/402 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HAH+TK+ L D + N LI+ Y + F AR L D+ D+ SW+ L+S Y
Sbjct: 75 GLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQ 134
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
G L+ F ++ G+ ++ T + AC+ ++ L GK VH G E + +
Sbjct: 135 NGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFV 194
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L++MYAKC E ++ RLFDE+ RN+VS N L + Y+ +
Sbjct: 195 ANTLVVMYAKCDEFLDSKRLFDEI-PERNVVSWNALFSCYVQXDFCG------------- 240
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
EA+ LF +M+ G+ P+E + S+++AC+ L + G+++H
Sbjct: 241 ------------------EAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHG 282
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++++ D F AL+DMY+K G L +A+ F K D+V+W +I G + +
Sbjct: 283 YLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQ 342
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ--LFRRMGGVYRVQPTIEHFVC 359
AL + QM+R+ HS L+ + LF +G
Sbjct: 343 ALELLGQMKRQ----------------LHSSLMKMDMESDLFVSVG-------------- 372
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
LVD+ S+ LL A ++P +D I++ A++S Y E
Sbjct: 373 LVDMYSKCDLLEDARMAFNLLPEKD-LIAWNAIISGYSQYWE 413
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 162/376 (43%), Gaps = 47/376 (12%)
Query: 44 MPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG 103
+PF+ L+ FS+ + + + ++ L S C + L G
Sbjct: 19 LPFKPA---PKLIQTVPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPG 75
Query: 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
+H + TK GL ++ N L+ +Y+KC+ GY
Sbjct: 76 LQIHAHITKSGLSDDPSIRNHLINLYSKCRXF------------------------GY-- 109
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223
AR++ DE + D+V W +++ G + AL F +M GV +E SV
Sbjct: 110 ------ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSV 163
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
L ACS + +L+ G+ VH ++ + D FV L+ MY+KC ++ F + ++V
Sbjct: 164 LKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNV 223
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC---RHS--GLITEGC 338
V+W + EA+ +FY+M GIKPNE + S++ AC R S G I G
Sbjct: 224 VSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGY 283
Query: 339 QLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT 398
+ ++G Y P + LVD+ ++ G L A + + D +S+ A+++ C+
Sbjct: 284 LI--KLG--YDWDPFSAN--ALVDMYAKVGDLADAISVFEKIKQPD-IVSWNAVIAGCVL 336
Query: 399 YSEFDLGKKVANNMMK 414
+ + ++ M +
Sbjct: 337 HEHHEQALELLGQMKR 352
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 284 bits (726), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 159/460 (34%), Positives = 247/460 (53%), Gaps = 2/460 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + + D ++ L+ + A +F +V + L+ + +
Sbjct: 68 IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E + L+ +++ E I+ D + + AC L G+ VH A K+G +
Sbjct: 128 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLR 187
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
++ +Y KC E+ +A R+F+EM ++V+ ++I+ Y D LV+ A VF + KD V
Sbjct: 188 IMELYGKCGELGDARRVFEEMPE--DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVC 245
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ G V+ ++ ALE F+ M E V P+E +V VLSACS L L+ GR VH ++
Sbjct: 246 WTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR 305
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ I + FV ALI+MYS+CGS++EA F + +DV+T+ TMI GL+ G +A+
Sbjct: 306 KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIE 365
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+F M + ++P TFV VL AC H GL+ G ++F M YRV+P IEH+ C+VDLL
Sbjct: 366 LFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLL 425
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
R G L +A + I+ M I LLSAC + +LG++VA + G YV
Sbjct: 426 GRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYV 485
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
LLS+ YA G W E A+ R MKE +K+PG S I++ +
Sbjct: 486 LLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNN 525
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 128/302 (42%), Gaps = 65/302 (21%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+ K S+ V ++ YG+ DAR +F++MP DV + ++S Y+D
Sbjct: 166 GREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSD 224
Query: 62 ----------FS---------------------DSGEVLILFKQLIFEGIVADKITLVIL 90
FS ++ L F+ + E + ++ T+V +
Sbjct: 225 QGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCV 284
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SAC++L L G+ VH Y K +E L + NAL+ MY++C +DEA +FDEM
Sbjct: 285 LSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK---- 340
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
D+D++ + +M+ G + +A+ELF+ M+
Sbjct: 341 ----------------------------DRDVITYNTMISGLSMNGKSRQAIELFRVMVG 372
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+ P V VL+ACS + +G + H + ++D+ + G LE
Sbjct: 373 RRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLE 432
Query: 270 EA 271
EA
Sbjct: 433 EA 434
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 121/248 (48%), Gaps = 15/248 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+++ K ++ +++VGN+LI+ Y R +A+ +FD+M RDV ++NT++S +
Sbjct: 296 IGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLS 355
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
S + + LF+ ++ + +T V + +AC+ + +G + H A +E +
Sbjct: 356 MNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQI 415
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ + + ++EA L M + + L L++ + ++L +V E+ D
Sbjct: 416 EHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELED 475
Query: 180 K---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ D + + H + + +EA ++ KM + G+ + CSS ++
Sbjct: 476 RGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKE--------PGCSS---IEVN 524
Query: 237 RLVHRFIL 244
+H F+L
Sbjct: 525 NEIHEFLL 532
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 152/427 (35%), Positives = 240/427 (56%), Gaps = 1/427 (0%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
A+ +F + +N+L+ + E L L+ ++ G+ D +T + AC
Sbjct: 119 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 178
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
+G VH + K G E + ++L+ +YA K++ A +LF+ + S R++VS N
Sbjct: 179 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFN-LCSARDVVSWNA 237
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
+I+GY+ + AR VFD +V +D++ W +M++G +P EAL LF +M GV P
Sbjct: 238 MIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPT 297
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
E +VS+LSAC+ L L G +H +I N I ++ V TAL+DMY+KCG + A F
Sbjct: 298 EATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFN 357
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
+ KDV+ W T+I G+A +G EA ++F +M+ G++PN+ TFV++L+AC H+G++ E
Sbjct: 358 AMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDE 417
Query: 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
G +L M Y ++P +EH+ C++DLL+RAG L +A E I MP E + ALL C
Sbjct: 418 GQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGC 477
Query: 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPG 456
+ F+LG+ V ++ L Y+LLSN YA W + + R MK K PG
Sbjct: 478 RIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPG 537
Query: 457 NSIIDLK 463
S+I+LK
Sbjct: 538 VSVIELK 544
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 127/300 (42%), Gaps = 64/300 (21%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY----- 59
+H HV K+ + D Y+ +SLIH Y A+ LF+ RDV SWN ++ Y
Sbjct: 188 VHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVE 247
Query: 60 -----------------------NDFSDSG---EVLILFKQLIFEGIVADKITLVILFSA 93
N ++ G E L LF Q+ G+ + T+V L SA
Sbjct: 248 MGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSA 307
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
CA L L G +H Y +E + AL+ MYAKC ++ A ++F+ M S
Sbjct: 308 CAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES------ 361
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
KD++ W +++ G +EA +LFK+M + GV
Sbjct: 362 --------------------------KDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGV 395
Query: 214 TPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
P++ V++LSACS + G +L+ I +ID+ ++ G LEEA+
Sbjct: 396 EPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAM 455
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 1 MGKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
+ KGLH H + ++ + VG +L+ Y + + A +F+ M +DV +WNT+++
Sbjct: 314 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 373
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEY 117
+ E LFK++ G+ + IT V + SAC+ + G K + C ++ G+E
Sbjct: 374 MAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEP 433
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
+ ++ + A+ ++EA+ L M N +L L+ G
Sbjct: 434 KVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGG 476
>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
Length = 549
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 154/468 (32%), Positives = 254/468 (54%), Gaps = 38/468 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H + K L+ D+++G++L++ Y + L A+V F+++P RDV WN +++ Y
Sbjct: 76 KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 135
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
VL F+++ E +V + T+ + S A + L+ G+ +H +A K+G + + +
Sbjct: 136 GQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 195
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N+L+ MY KCK +++AL E+F+ + +KDI
Sbjct: 196 NSLIDMYGKCKCIEDAL--------------------------------EIFEMMREKDI 223
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W S+ + + L L +M+ G+ PD + +VL ACS L+ L +GR +H +
Sbjct: 224 FSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGY 283
Query: 243 ILQNNITQDA------FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
++ + + +D +K A+IDMY+KCGS+ +A + F + KDV +W MI G +
Sbjct: 284 MIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMH 343
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G GNEAL +F +M +KP+E TFV VL+AC H+G +++G +M Y V PTIEH
Sbjct: 344 GYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEH 403
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C++D+L RAG L +A E MP E + ++ALL+AC + L + A + +L
Sbjct: 404 YTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELE 463
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ +YVL+SN Y G + EV E R M++ RK PG S I+LK+
Sbjct: 464 PEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKN 511
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 129/280 (46%), Gaps = 45/280 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K DS + V NSLI YG+ DA +F+ M +D+ SWN++ S++
Sbjct: 176 GRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQ 235
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY---- 117
D L L +++ GI D +T+ + AC+ L L +G+ +H Y GL
Sbjct: 236 CGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKD 295
Query: 118 --MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ ++NA++ MYAKC M +A +F+ M +++ S NI+I GY
Sbjct: 296 IDDVLLKNAVIDMYAKCGSMRDAHLVFERM-XNKDVASWNIMIMGY-------------- 340
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
MHG EALE+F +M + + PDE V VLSACS +
Sbjct: 341 ------------GMHG-----YGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQ 383
Query: 236 GRLVHRFILQNNITQDAFVK----TALIDMYSKCGSLEEA 271
GR F+ Q D T +IDM + G L+EA
Sbjct: 384 GR---NFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEA 420
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 128/297 (43%), Gaps = 46/297 (15%)
Query: 128 MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRS 187
MY+KC +M+ AL +F + N+ + N +I+G+I
Sbjct: 1 MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGF--------------------- 39
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247
PEE E ++KM +EGV PD+ + AC + + + +H + +
Sbjct: 40 ----------PEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEI---KKIHGLLFKFG 86
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
+ D F+ +AL++ Y K G +E A V F + +DVV W M+ G A G L F
Sbjct: 87 LELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFR 146
Query: 308 QMERKGIKPNEATFVSVLAACR-----HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
+M + + P+ T +L+ ++G I G + +MG Y + + L+D
Sbjct: 147 RMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAM--KMG--YDSGVAVSN--SLID 200
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+ + + A E ++M +D F S+ ++ S + D ++ + M+ G Q
Sbjct: 201 MYGKCKCIEDALEIFEMMREKDIF-SWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQP 256
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/440 (34%), Positives = 247/440 (56%), Gaps = 2/440 (0%)
Query: 24 LIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVAD 83
L++ Y ++ DA+ +F+ + D+ SW L+S+Y S + +F L G+ D
Sbjct: 294 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 353
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
+V SAC + L G+ VH + L + NAL+ MY++ ++ A +F
Sbjct: 354 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 413
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
M +++ S L+NG+I ++ AR +FDE+ ++ V W +M+ G V+ + P LE
Sbjct: 414 TM-EIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLE 472
Query: 204 LFKKMIDEGVT-PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
LF++M EG P +V+VLS C+ + G VH ++ + N+ D V AL+DMY
Sbjct: 473 LFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMY 532
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
+K G+L AL F + +DV +WTTMI GLA +G G AL F M + G PNE T +
Sbjct: 533 AKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLL 592
Query: 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382
SVL+AC H+GL+ EG LF++M + ++P I+H+ C+VDLL RAGLL +A+E I+ MP
Sbjct: 593 SVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPI 652
Query: 383 EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442
+ + +++LLSAC+ + L + +++L Y+LL N Y W + +A
Sbjct: 653 KPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKA 712
Query: 443 RRNMKELQTRKKPGNSIIDL 462
R+ M++ + +KKPG S +++
Sbjct: 713 RKAMRDRRVKKKPGCSWVEV 732
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 138/346 (39%), Gaps = 69/346 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V + L SD VGN+LI Y R A +F M +DV SW +L++ +
Sbjct: 373 GRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIK 432
Query: 62 FSD---------------------------SGEVLI----LFKQLIFEGI-VADKITLVI 89
+D GEV I LF+++ EG IT+V
Sbjct: 433 CNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVA 492
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ S CA + G +VH Y K L+ + + NAL+ MYAK + AL++F EM R
Sbjct: 493 VLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKR- 551
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D+ W +M+ G + ALE F M
Sbjct: 552 -------------------------------DVFSWTTMISGLALHGKGTHALEAFSDMS 580
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
G P+E ++SVLSACS + GR L + + + I ++D+ + G L
Sbjct: 581 KSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLL 640
Query: 269 EEALVTFYKTDCK-DVVTWTTMIEGL---ANYGLGNEALRVFYQME 310
EA K D V W +++ N L A ++ ++E
Sbjct: 641 REAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELE 686
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 20/225 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H +V KT LD D+ V N+L+ Y + A +F +MP RDV SW T++S
Sbjct: 505 LGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLA 564
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-----VHCYATKVGL 115
L F + G +++TL+ + SAC+ + G++ V C+ K +
Sbjct: 565 LHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKI 624
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI---DMELVDLARE 172
++ M + L + + EA L + M + + V L++ + ++ L ++A +
Sbjct: 625 QHYGCMVDLL----GRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGK 680
Query: 173 VFDEIVDKD----IVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
+ E+ D I+LW A + E+AL+ K M D V
Sbjct: 681 MIIELEPDDDGVYILLWNIY----CSASRWEDALKARKAMRDRRV 721
>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
Length = 696
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 160/455 (35%), Positives = 248/455 (54%), Gaps = 43/455 (9%)
Query: 19 YVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE 78
+ N+L+ Y ++ D++ LF+ RD+ SWNT++S ++ E L F+ ++ E
Sbjct: 149 FTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLE 208
Query: 79 GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN--MENALLLMYAKCKEMD 136
G+ D +T+ + AC+ LE+L GK +H Y + + + N + +AL+ MY C++
Sbjct: 209 GVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNN-DLIENSFVGSALVDMYCNCRQ-- 265
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
V+ R VFD I+ + I LW +M+ G +
Sbjct: 266 ------------------------------VESGRRVFDHILGRRIELWNAMISGYARNG 295
Query: 197 QPEEALELFKKMID-EGVTPDEEVMVSVLSAC-SSLSNLQYGRLVHRFILQNNITQDAFV 254
E+AL LF +MI G+ P+ M SV+ AC SL+ + G+ +H + ++N + D V
Sbjct: 296 LDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITV 355
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM----E 310
+AL+DMY+KCG L + F + K+V+TW +I +G G EAL +F M
Sbjct: 356 GSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAG 415
Query: 311 RKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL 369
R G KPNE TF++V AAC HSGLI+EG LF RM + V+PT +H+ C+VDLL RAG
Sbjct: 416 RGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQ 475
Query: 370 LYQAEEFIKIMPAE-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428
L +A E + MPAE DK ++ +LL AC + +LG+ A N++ L YVLLSN
Sbjct: 476 LEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSN 535
Query: 429 FYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+ G W + E R+NM+++ +K+PG S I+ +
Sbjct: 536 IYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFR 570
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 107/406 (26%), Positives = 175/406 (43%), Gaps = 66/406 (16%)
Query: 45 PFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
P R SW + +D E + + ++ G D + A + L+ L G+
Sbjct: 53 PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112
Query: 105 TVHCYATKVG--------LEYMLNM-------------ENALLLMYAKCKEMDEALRLFD 143
+H A K G ++NM NAL+ MYAK +D++ LF
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALF- 171
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
+ VD+D+V W +M+ ++ + EAL
Sbjct: 172 -------------------------------ESFVDRDMVSWNTMISSFSQSDRFSEALA 200
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN-ITQDAFVKTALIDMY 262
F+ M+ EGV D + SVL ACS L L G+ +H ++L+NN + +++FV +AL+DMY
Sbjct: 201 FFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMY 260
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER-KGIKPNEATF 321
C +E F + + W MI G A GL +AL +F +M + G+ PN T
Sbjct: 261 CNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTM 320
Query: 322 VSVLAACRHS-GLITEGCQL----FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
SV+ AC HS I +G ++ R M + I LVD+ ++ G L +
Sbjct: 321 ASVMPACVHSLAAIAKGKEIHAYAIRNM-----LASDITVGSALVDMYAKCGCLNLSRRV 375
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
MP ++ I++ L+ AC + + + ++ NM+ + EA
Sbjct: 376 FNEMPNKN-VITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEA 420
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA+ + L SDI VG++L+ Y + +R +F++MP ++V +WN L+
Sbjct: 337 GKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGM 396
Query: 62 FSDSGEVLILFKQLIFEG-----IVADKITLVILFSACA 95
E L LFK ++ E +++T + +F+AC+
Sbjct: 397 HGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACS 435
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 158/459 (34%), Positives = 251/459 (54%), Gaps = 9/459 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
H + K +S+++VGN L+ Y + AR LFDKMP RDV SWN +++ Y
Sbjct: 185 FHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGL 244
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ L LF+++ ++ T++ ++ C +E V + E L N
Sbjct: 245 IEDALKLFQEIPKRDVITWN-TMMAGYAQCGDVEN-----AVELFEKMP--EQNLVSWNT 296
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
++ Y + + EA +LF M RN++S N +I+G+ V+ A ++F + + ++V
Sbjct: 297 MIAGYVQNGSVKEAFKLFQIM-PERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVS 355
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ G + Q E AL+LF +M + P+ E VL AC++L+ L+ G H ++
Sbjct: 356 WNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVI 415
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
++ D V L+ MY+KCGS+E+A F + +D + + MI G A G E+L
Sbjct: 416 RSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLE 475
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+F QM+ G+KP+ TFV VL+AC H+GL+ EG Q F M Y + P +EH+ C++DLL
Sbjct: 476 LFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLL 535
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
RAG +A + I MP + + +LLSAC T++ DLG+KVA +++ L Q+ YV
Sbjct: 536 GRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYV 595
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
LLSN YA G W ++ R MK+ + +KK G S I +K
Sbjct: 596 LLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIK 634
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 174/337 (51%), Gaps = 15/337 (4%)
Query: 3 KGLHAHVTKTALD-SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LHAH+ +T + DI +GN L+ Y ++ +AR +FD+MP ++V SW +++ Y
Sbjct: 84 KLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYAR 143
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L F ++ GI + T + AC LE L H K G E + +
Sbjct: 144 HEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVL---GEFHDEIVKGGFESNVFV 200
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L+ MYAK ++ A LFD+M +R++VS N +I GY+ L++ A ++F EI +D
Sbjct: 201 GNGLVDMYAKRGCIEFARELFDKM-PQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRD 259
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W +MM G + E A+ELF+KM E+ +VS + + +Q G +
Sbjct: 260 VITWNTMMAGYAQCGDVENAVELFEKM-------PEQNLVSWNTMIAGY--VQNGSVKEA 310
Query: 242 F-ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
F + Q ++ A+I +++ G +EEAL F +VV+W MI G + G
Sbjct: 311 FKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAE 370
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
AL++F QM+ +KPN TF VL AC ++ +G
Sbjct: 371 NALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQG 407
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 100/199 (50%), Gaps = 10/199 (5%)
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI-TQDAFVKTAL 258
EAL + + M++ G+ P S+L C + +L +L+H ++Q QD + L
Sbjct: 47 EALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKL 106
Query: 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
+ +Y K GSL EA F + K+VV+WT MI A + G EAL FY+M+ GI+PN
Sbjct: 107 VSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNH 166
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEF 376
TF S+L AC ++ E + G V FV LVD+ ++ G + A E
Sbjct: 167 FTFASILPACTDLEVLGEFHDEIVKGGFESNV------FVGNGLVDMYAKRGCIEFAREL 220
Query: 377 IKIMPAEDKFISYKALLSA 395
MP D +S+ A+++
Sbjct: 221 FDKMPQRD-VVSWNAMIAG 238
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 113/269 (42%), Gaps = 66/269 (24%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G H V ++ SD+ VGN+L+ Y + DAR +FD+M +D S + ++ Y
Sbjct: 407 GNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAI 466
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E L LF+Q+ F G+ D++T V + SAC C+A V
Sbjct: 467 NGCSKESLELFEQMQFTGLKPDRVTFVGVLSAC-------------CHAGLV-------- 505
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
DE + FD M +I A E + ++D
Sbjct: 506 --------------DEGRQYFDIMTRFYHITP----------------AMEHYGCMID-- 533
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+L R+ GC +EA +L KM + PD ++ S+LSAC + +N+ G V +
Sbjct: 534 -LLGRA---GCF-----DEANDLINKM---PIKPDADMWGSLLSACRTHNNIDLGEKVAQ 581
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEE 270
++ N Q+ L ++Y+ G ++
Sbjct: 582 HLIALN-PQNPAPYVLLSNIYAAAGRWDD 609
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 153/463 (33%), Positives = 254/463 (54%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH+ + K ++ D +VG LI Y + L DAR++FD MP +DV WN+++S Y+
Sbjct: 307 LGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYS 366
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E + LF + EG+ ++ TL + + A + + + VH + K G +Y
Sbjct: 367 NCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGY 426
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+LL Y KC +++A + VF+ +
Sbjct: 427 VANSLLDSYGKCCLLEDAAK--------------------------------VFEVCPAE 454
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V + SM+ + EEAL+++ +M D + PD + S+ +AC++LS + G+ +H
Sbjct: 455 DLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIH 514
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+L+ + D F +L++MY+KCGS+++A F + + +V+W+ MI GLA +G G
Sbjct: 515 VHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGR 574
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL++FYQM + GI PN T VSVL+AC H+GL+TE + F M ++ + PT EH+ C+
Sbjct: 575 KALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACM 634
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L R G L +A +K MP + + ALL A + +LG+ A ++ L +
Sbjct: 635 VDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKS 694
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++LL+N YA G W VA+ RR+MK +K+PG S I+LK
Sbjct: 695 GTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELK 737
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/368 (29%), Positives = 184/368 (50%), Gaps = 49/368 (13%)
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
L ++I GI ++ +L + +ACA LE +YG VH Y K+G + NALL MYA
Sbjct: 175 LVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYA 234
Query: 131 K--CKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
K C E A VF EI DIV W ++
Sbjct: 235 KSGCPEA----------------------------------AIAVFYEIPKPDIVSWNAV 260
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ GCV ++ + AL+L KM V P + S L AC+++ ++ GR +H +++ ++
Sbjct: 261 IAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDM 320
Query: 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
D+FV LIDMYSKCG L++A + F KDV+ W ++I G +N G EA+ +F
Sbjct: 321 EPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTN 380
Query: 309 MERKGIKPNEATFVSVL---AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
M ++G++ N+ T ++L A + +G + + + G Y+ + + L+D
Sbjct: 381 MYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSG--YQYDGYVAN--SLLDSYG 436
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ--SHEAY 423
+ LL A + ++ PAED ++Y ++++A YS++ LG++ +++ ++ +A+
Sbjct: 437 KCCLLEDAAKVFEVCPAED-LVAYTSMITA---YSQYGLGEEALKMYLRMQDRDIKPDAF 492
Query: 424 VLLSNFYA 431
+ S F A
Sbjct: 493 IFSSLFNA 500
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 164/463 (35%), Positives = 244/463 (52%), Gaps = 34/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK H V K LD D YV +SLI Y R AR +FD+M RD+ SWN+++S Y+
Sbjct: 147 GKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSK 206
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + LF ++ EG D++TLV + AC L L G+ V + + +E M
Sbjct: 207 MGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYM 266
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+AL+ MY KC ++ A R VFD + +KD
Sbjct: 267 GSALIDMYGKCGDLISA--------------------------------RRVFDSMPNKD 294
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G + EA+ LF M + G PD M+ VLSACS++ L G+ V
Sbjct: 295 VVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVET 354
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + D +V +ALIDMY+KCGSL++A+ F K+ V+W MI LA +G E
Sbjct: 355 HASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQE 414
Query: 302 ALRVFYQMERKG--IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
AL +F +M + ++PN+ TF+ VL+AC H+GL+ EG QLF M + + P +EH+ C
Sbjct: 415 ALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSC 474
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDL +RAGLLY+A + IK MP + I +LL AC D+G++V +++ +
Sbjct: 475 MVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELSN 534
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YV+ S YA W + A+ R M++ K PG S ID+
Sbjct: 535 SGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTPGCSWIDI 577
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 110/329 (33%), Positives = 166/329 (50%), Gaps = 42/329 (12%)
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
L+ +L G+ A+ T LF AC + L +GK HC K GL+ + ++L+ MYA
Sbjct: 115 LYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYA 174
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
+C EM A ++FDEMG R++VS N +I+GY M
Sbjct: 175 RCGEMGFARKVFDEMGD-RDLVSWNSMISGYSKMGFT----------------------- 210
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
+EA+ LF +M +EG PDE +VSVL AC L +L GR V F+L+ +
Sbjct: 211 --------KEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEV 262
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
++++ +ALIDMY KCG L A F KDVVTW +I G A G NEA+ +F M
Sbjct: 263 NSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMR 322
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSR 366
G P+ T + VL+AC G + G + + + ++H V L+D+ ++
Sbjct: 323 EAGPHPDRVTMIEVLSACSTIGALDLG-----KWVETHASEKGLQHDVYVASALIDMYAK 377
Query: 367 AGLLYQAEEFIKIMPAEDKFISYKALLSA 395
G L A + MP +++ +S+ A++SA
Sbjct: 378 CGSLDDAVRVFESMPHKNE-VSWNAMISA 405
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 155/317 (48%), Gaps = 39/317 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + V + ++ + Y+G++LI YG+ AR +FD MP +DV +WN +++ Y
Sbjct: 247 LGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYA 306
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E ++LF + G D++T++ + SAC+ + L GK V +A++ GL++ +
Sbjct: 307 QNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVY 366
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +AL+ MYAKC +D+A+R+F+ M +N VS N +I+
Sbjct: 367 VASALIDMYAKCGSLDDAVRVFESM-PHKNEVSWNAMISAL------------------- 406
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMI-DEG-VTPDEEVMVSVLSACSSLSNLQYGR- 237
HG Q +EAL LF++M D G V P++ + VLSAC + GR
Sbjct: 407 -------AFHG-----QAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQ 454
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLA-- 294
L L + + ++D+ ++ G L EA K K D + +++
Sbjct: 455 LFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRR 514
Query: 295 -NYGLGNEALRVFYQME 310
N +G +++F +ME
Sbjct: 515 RNADVGERVIQLFLEME 531
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 156/347 (44%), Gaps = 44/347 (12%)
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
E+ + LL + +CK + ++ +M +I N L++ ID++ + A VF+
Sbjct: 27 EHHQTLTEKLLSLIKQCKSKNLLKQIHAQM-LINSIPKPNFLLSKIIDLKDLAYASLVFN 85
Query: 176 EIVDKDIVLWRSMMHGCVKA-KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
++ +I + M+ G K+ + +EL+ K+ G+ + + AC ++ L
Sbjct: 86 QLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLV 145
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
+G++ H + + + D +V +LI MY++CG + A F + +D+V+W +MI G +
Sbjct: 146 HGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYS 205
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
G EA+ +F +M +G +P+E T VSVL AC G + G + G V + +
Sbjct: 206 KMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWV---EGFVLEKKMEV 262
Query: 355 EHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL-------------------- 392
++ L+D+ + G L A MP +D +++ A+
Sbjct: 263 NSYMGSALIDMYGKCGDLISARRVFDSMPNKD-VVTWNAIITGYAQNGASNEAIVLFNGM 321
Query: 393 ---------------LSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
LSAC T DLGK V + + G Q H+ YV
Sbjct: 322 REAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQ-HDVYV 367
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 153/465 (32%), Positives = 262/465 (56%), Gaps = 4/465 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HAHV K +L ++ ++ + + A +LF ++ ++ ++N ++ Y
Sbjct: 27 KKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHN 86
Query: 63 SDSGEVLILFKQLIFEG---IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ +F Q++ + DK T + +C + G VH K G ++
Sbjct: 87 RHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGADFHC 146
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
ENAL+ MY K ++ A ++F+EM S R+++S N LI GY+ + ++ ARE+FD++
Sbjct: 147 ITENALIDMYTKFGDLTNACKVFEEM-SHRDVISWNSLIFGYVKLGQMNSARELFDDMPV 205
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+ IV W +M+ G + +AL++F++M G+ PDE +++VL AC+ L L+ G+ +
Sbjct: 206 RTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWI 265
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + +N + + ALI+MY+KCG ++EA F + KDV++W+TMI GLAN+G G
Sbjct: 266 HMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKG 325
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA+++F +M + + PNE TF+ VL AC H+GL EG + F M Y ++P IEH+ C
Sbjct: 326 YEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGC 385
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
L+DLL R+G L QA + I MP + + +LLS+C + + +M+L +
Sbjct: 386 LIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPEE 445
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVLL+N YA G W +V+ R+ ++ + +K PG+S I++ +
Sbjct: 446 SGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVNN 490
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 136/323 (42%), Gaps = 65/323 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWN------- 53
+G +H V K D N+LI Y + T+A +F++M RDV SWN
Sbjct: 129 LGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYV 188
Query: 54 ------------------------TLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
T+++ Y G+ L +F+++ GI D+I+++
Sbjct: 189 KLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIA 248
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ ACA+L L GK +H YA K G + NAL+ MYAKC +DEA LFD++
Sbjct: 249 VLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQL---- 304
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
V+KD++ W +M+ G + EA++LF++M
Sbjct: 305 ----------------------------VEKDVISWSTMIGGLANHGKGYEAIQLFEEMC 336
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
V P+E + VL ACS G + +I + LID+ + G L
Sbjct: 337 KVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCL 396
Query: 269 EEALVTFYKTDCK-DVVTWTTMI 290
+AL T K K D W +++
Sbjct: 397 GQALDTISKMPIKPDSRIWNSLL 419
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 165/495 (33%), Positives = 269/495 (54%), Gaps = 36/495 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIY 59
K +HA+V K L+SD ++ L+H + ++L A LF P DV NTL+
Sbjct: 22 KQIHANVLKLGLESDPFIAGKLLH-HCAISLSDSLDYACRLFRYTPNPDVFMHNTLIRGL 80
Query: 60 NDFSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ + L+ F ++ D + + A A L + G +HC A GL+
Sbjct: 81 YESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTH 140
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEM----------------------GSR-------- 148
L + L+ MY +C + A ++FDEM G R
Sbjct: 141 LFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPV 200
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
RN++S N+++ GY ++LARE+F E+ KD V W +M+ G EEA F+++
Sbjct: 201 RNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFREL 260
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+G+ P+E + VLSAC+ L++G+++H FI ++ + V AL+D YSKCG++
Sbjct: 261 QRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNV 320
Query: 269 EEALVTFYKT-DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
A + F + + +++V+WT+M+ LA +G G EA+ +F++ME GI+P+E F+S+L A
Sbjct: 321 LMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYA 380
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C H+GL+ +GC+ F +M G+Y ++P+IEH+ C+VDL RAG L +A EF+ MP I
Sbjct: 381 CSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAI 440
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
++ LL AC + + L ++V + +L + +VLLSN YA+ G W + A RR+M
Sbjct: 441 IWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMT 500
Query: 448 ELQTRKKPGNSIIDL 462
E + K PG S+I++
Sbjct: 501 EQRITKTPGWSMIEV 515
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/362 (24%), Positives = 143/362 (39%), Gaps = 97/362 (26%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYG------------------------------- 29
+G LH LD+ ++VG +LI YG
Sbjct: 124 VGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACC 183
Query: 30 RMALFTDARVLFDKMPFRDVGSWNTLMSIYND---------------------------- 61
R R LFD MP R++ SWN +++ Y
Sbjct: 184 RGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVG 243
Query: 62 FSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
F+ +G E F++L +G+ ++ +L + SACA+ L +GK +H + K GL ++
Sbjct: 244 FAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWI 303
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+++ NALL Y+KC + A +F+ + + RNIVS
Sbjct: 304 VSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVS------------------------- 338
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-R 237
W SMM EEA+ +F KM + G+ PDE +S+L ACS ++ G
Sbjct: 339 ------WTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCE 392
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLAN 295
+ NI ++D+Y + G L++A V C ++ W T++ +
Sbjct: 393 YFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAII-WRTLLGACSM 451
Query: 296 YG 297
+G
Sbjct: 452 HG 453
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/471 (32%), Positives = 249/471 (52%), Gaps = 41/471 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ H + D++V ++L+ Y + DAR LFD++ R++ SW ++++ Y
Sbjct: 171 GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQ 230
Query: 62 FSDSGEVLILFKQLIFEG--------IVADKITLVILFSACARLEKLHYGKTVHCYATKV 113
D+ L+LFK+ + E + D I +V + SAC+R+ + + VH + K
Sbjct: 231 NDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKR 290
Query: 114 GLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
G E L +EN L+ YAKC E+ ++R V
Sbjct: 291 GFEGDLGVENTLMDAYAKCGELG--------------------------------VSRRV 318
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSN 232
FD + ++D++ W S++ + E++E+F +M+ +G + + + +VL AC+ +
Sbjct: 319 FDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGS 378
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
+ G+ +H +++ + + FV T++IDMY KCG +E A F + K+V +W+ M+ G
Sbjct: 379 QRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAG 438
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
+G EAL VFY+M G+KPN TFVSVLAAC H+GL+ EG F+ M + V+P
Sbjct: 439 YGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEP 498
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
+EH+ C+VDLL RAG L +A + IK M F+ + ALL AC + DLG+ A +
Sbjct: 499 GVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKL 558
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+L ++ YVLLSN YA G W +V R MK K PG S++D+K
Sbjct: 559 FELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIK 609
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 140/294 (47%), Gaps = 41/294 (13%)
Query: 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH 107
+V SWN++++ DS E L F + + ++ T +C+ L LH G+ H
Sbjct: 116 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 175
Query: 108 CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
A G E L + +AL+ MY+KC E+ +A LFDE+ S RNIVS
Sbjct: 176 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEI-SHRNIVS-------------- 220
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE--GVTPDEEV------ 219
W SM+ G V+ AL LFK+ + E G D EV
Sbjct: 221 -----------------WTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIA 263
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279
MVSVLSACS +S VH F+++ D V+ L+D Y+KCG L + F
Sbjct: 264 MVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMA 323
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSG 332
+DV++W ++I A G+ E++ +F++M + G I N T +VL AC HSG
Sbjct: 324 ERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSG 377
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 134/298 (44%), Gaps = 24/298 (8%)
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK-DIVLWRSMMHGCVKAKQPEE 200
F RR+I + +L Y + + +F++ VDK ++ W S++ ++ E
Sbjct: 79 FSGFSKRRSICAGAVLRRRYSNNPNLT---TLFNKYVDKTNVFSWNSVIAELARSGDSVE 135
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
AL F M + P+ + +CS+L +L GR H+ L D FV +AL+D
Sbjct: 136 ALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVD 195
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF--YQMERKG----- 313
MYSKCG L +A F + +++V+WT+MI G + AL +F + +E G
Sbjct: 196 MYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDG 255
Query: 314 -IKPNEATFVSVLAACRH--SGLITEGCQLF---RRMGGVYRVQPTIEHFVCLVDLLSRA 367
+ + VSVL+AC ITEG F R G V+ T L+D ++
Sbjct: 256 EVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENT------LMDAYAKC 309
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
G L + M AE IS+ ++++ ++ + M+K G ++ A L
Sbjct: 310 GELGVSRRVFDGM-AERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTL 366
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 13/184 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V K L+S+++VG S+I Y + AR FD+M ++V SW+ +++ Y
Sbjct: 381 LGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYG 440
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTV-HCYATKVGL 115
+ E L +F ++ G+ + IT V + +AC+ E H+ K + H + + G+
Sbjct: 441 MHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGV 500
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL----AR 171
E+ M + L + + EA L M R + V L+ + VDL AR
Sbjct: 501 EHYGCMVDLL----GRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISAR 556
Query: 172 EVFD 175
++F+
Sbjct: 557 KLFE 560
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 243/461 (52%), Gaps = 33/461 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + K +D V +L+ Y + DAR +F+++ ++V +WN +++ Y
Sbjct: 426 GRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQ 485
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ F+ L+ EGI D T + + C + L GK V + G E L++
Sbjct: 486 HEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHI 545
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ M+ C ++ A+ LF++M R D
Sbjct: 546 RNALVSMFVNCGDLMSAMNLFNDMPER--------------------------------D 573
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G V+ + + A + FK M + GV PD+ +L+AC+S L GR +H
Sbjct: 574 LVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHA 633
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I + + D V T LI MY+KCGS+++A + F+ K+V +WT+MI G A +G G E
Sbjct: 634 LITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKE 693
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F QM+++G+KP+ TFV L+AC H+GLI EG F M + ++P +EH+ C+V
Sbjct: 694 ALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPRMEHYGCMV 752
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL RAGLL++A EFI M + + ALL AC + + +L +KVA ++L
Sbjct: 753 DLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDG 812
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YV+LSN YA G W EV + R+ M + KKPG S I++
Sbjct: 813 VYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEV 853
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 119/416 (28%), Positives = 208/416 (50%), Gaps = 36/416 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H H+ + + DI++ N LI Y + A+ +FD+MP +DV SWN L+ Y
Sbjct: 123 GERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQ 182
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L +Q++ +G+ DK T V + +ACA + + G + G + L +
Sbjct: 183 HRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFV 242
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ M+ KC +D+AL+ VF+ + +D
Sbjct: 243 GTALINMHIKCGGVDDALK--------------------------------VFNNLPRRD 270
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W SM+ G + +Q ++A LF+ M +EGV PD+ VS+L AC+ L+ G+ VH
Sbjct: 271 LITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHA 330
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + + +V TAL+ MY+KCGS+E+AL F ++VV+WT MI G A +G E
Sbjct: 331 RMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEE 390
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR-MGGVYRVQPTIEHFVCL 360
A F +M GI+PN TF+S+L AC + +G Q+ R + Y + L
Sbjct: 391 AFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR--TAL 448
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ + ++ G L A + + ++ +++ A+++A + + ++D ++K G
Sbjct: 449 LSMYAKCGSLMDARNVFERISKQN-VVAWNAMITAYVQHEKYDNAVATFQALLKEG 503
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 115/403 (28%), Positives = 190/403 (47%), Gaps = 40/403 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G L + + D+D++VG +LI+ + + DA +F+ +P RD+ +W ++++
Sbjct: 224 GGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLAR 283
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ LF+ + EG+ DK+ V L AC E L GK VH +VGL+ + +
Sbjct: 284 HRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYV 343
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ALL MY KC M++AL EVF+ + ++
Sbjct: 344 GTALLSMYTKCGSMEDAL--------------------------------EVFNLVKGRN 371
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ G + + EEA F KMI+ G+ P+ +S+L ACS S L+ GR +H
Sbjct: 372 VVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHD 431
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I++ D V+TAL+ MY+KCGSL +A F + ++VV W MI + +
Sbjct: 432 RIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDN 491
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG---CQLFRRMGGVYRVQPTIEHFV 358
A+ F + ++GIKP+ +TF S+L C+ + G L R G + +
Sbjct: 492 AVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAG----FESDLHIRN 547
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
LV + G L A MP D +S+ +++ + + E
Sbjct: 548 ALVSMFVNCGDLMSAMNLFNDMPERD-LVSWNTIIAGFVQHGE 589
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 160/297 (53%), Gaps = 5/297 (1%)
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRR---NIVSLNILINGYIDMELVDLAREVFDEIVD 179
++LL + K K + + R+ + + + +I N+LI+ Y + A+++FDE+ D
Sbjct: 108 SSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPD 167
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KD+ W ++ G V+ ++ EEA L ++M+ +GV PD+ V +L+AC+ N+ G +
Sbjct: 168 KDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGEL 227
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
IL D FV TALI+M+ KCG +++AL F +D++TWT+MI GLA +
Sbjct: 228 FSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQF 287
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+A +F ME +G++P++ FVS+L AC H + +G ++ RM V + I
Sbjct: 288 KQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEV-GLDTEIYVGTA 346
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L+ + ++ G + A E ++ + +S+ A+++ + + N M++ G
Sbjct: 347 LLSMYTKCGSMEDALEVFNLVKGRN-VVSWTAMIAGFAQHGRMEEAFLFFNKMIESG 402
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 134/293 (45%), Gaps = 37/293 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK + + + + +SD+++ N+L+ + A LF+ MP RD+ SWNT+++ +
Sbjct: 526 LGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFV 585
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ FK + G+ D+IT L +ACA E L G+ +H T+ L+ +
Sbjct: 586 QHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVV 645
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ L+ MY KC +D+A +F + ++N+ S
Sbjct: 646 VGTGLISMYTKCGSIDDAHLVFHNL-PKKNVYS--------------------------- 677
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
W SM+ G + + +EALELF +M EGV PD V LSAC+ ++ G +H
Sbjct: 678 ----WTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEG--LH 731
Query: 241 RF--ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMI 290
F + NI ++D++ + G L EA+ K K D W ++
Sbjct: 732 HFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALL 784
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 109/257 (42%), Gaps = 35/257 (13%)
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
KA Q EA+ + + + + S+L C NL G +H I + I D F
Sbjct: 81 KAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIF 140
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
+ LI MY+KCG+ A F + KDV +W ++ G + EA R+ QM + G
Sbjct: 141 MWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDG 200
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFR----------------------RMGGVYRVQ 351
+KP++ TFV +L AC + + +G +LF + GGV
Sbjct: 201 VKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDAL 260
Query: 352 PTIEH--------FVCLVDLLSRAGLLYQAEEFIKIMPAE----DKFISYKALLSACITY 399
+ + ++ L+R QA ++M E DK +++ +LL AC
Sbjct: 261 KVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDK-VAFVSLLKACNHP 319
Query: 400 SEFDLGKKVANNMMKLG 416
+ GK+V M ++G
Sbjct: 320 EALEQGKRVHARMKEVG 336
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 158/460 (34%), Positives = 262/460 (56%), Gaps = 3/460 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD-ARVLFDKMPFRDVGSWNTLMSIYNDFS 63
HAH+ K+ + + + ++ F D A ++F +M ++ SWNT++ ++ S
Sbjct: 43 FHAHLIKSGQAIESFAASRILAFCASPLGNMDYAYLVFLQMQNPNLFSWNTVIRGFSQSS 102
Query: 64 DSGEVLILF-KQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ L LF L+ + ++T +F A ++L H G +H K+GL++ +
Sbjct: 103 NPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQLHGRIIKLGLQFDPFIR 162
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N +L MYA + EA R+F++ ++VS N +I G +D +R++FD++ K+
Sbjct: 163 NTILYMYATGGFLSEARRIFNQ-EMEFDVVSWNSMILGLAKCGEIDESRKLFDKMPVKNP 221
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
+ W SM+ G V+ +EAL+LF KM +E + P E MVS+L+A + + L+ G +H +
Sbjct: 222 ISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGVWIHEY 281
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
I +NN+ +A V TA+IDMY KCGS+ AL F K C+ + +W +MI GLA G EA
Sbjct: 282 IKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVNGCEKEA 341
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
+ VF +E +KP+ +F++VL AC H ++ EG + F RM YR++P+I+H+ +VD
Sbjct: 342 ILVFKMLESSSLKPDCISFMAVLTACNHGAMVDEGMEFFSRMKNTYRIEPSIKHYNLMVD 401
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
++SRAG L +AE+FIK MP E I + LLSAC Y ++ K+ A + +L +
Sbjct: 402 MISRAGFLEEAEQFIKTMPIEKDAIIWGCLLSACRIYGNTEMAKRAAEKVNELDPEETMG 461
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVL++N +A ++ E R M+ + K+PG S I++
Sbjct: 462 YVLMANIHAWGNNFVGAMEKRVAMRMKKVEKEPGGSFIEV 501
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 137/334 (41%), Gaps = 75/334 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTL------ 55
G LH + K L D ++ N++++ Y ++AR +F++ DV SWN++
Sbjct: 143 GAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAK 202
Query: 56 -------------MSIYNDFSDSG------------EVLILFKQLIFEGIVADKITLVIL 90
M + N S + E L LF ++ E I + T+V L
Sbjct: 203 CGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSL 262
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
+A A++ L G +H Y K L+ + A++ MY KC + AL
Sbjct: 263 LNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNAL----------- 311
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+VF++I + + W SM+ G +EA+ +FK +
Sbjct: 312 ---------------------QVFEKIPCRSLSSWNSMIFGLAVNGCEKEAILVFKMLES 350
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYG-----RLVHRFILQNNITQDAFVKTALIDMYSKC 265
+ PD ++VL+AC+ + + G R+ + + ++ +I ++DM S+
Sbjct: 351 SSLKPDCISFMAVLTACNHGAMVDEGMEFFSRMKNTYRIEPSIKH----YNLMVDMISRA 406
Query: 266 GSLEEALVTFYKTDC--KDVVTWTTMIEGLANYG 297
G LEEA F KT KD + W ++ YG
Sbjct: 407 GFLEEA-EQFIKTMPIEKDAIIWGCLLSACRIYG 439
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 80/191 (41%), Gaps = 26/191 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H ++ K L + V ++I Y + +A +F+K+P R + SWN+++
Sbjct: 275 GVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAV 334
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E +++FK L + D I+ + + +AC H G+E+ M
Sbjct: 335 NGCEKEAILVFKMLESSSLKPDCISFMAVLTACN-----------HGAMVDEGMEFFSRM 383
Query: 122 ENA------------LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMEL 166
+N ++ M ++ ++EA + M ++ + L++ Y + E+
Sbjct: 384 KNTYRIEPSIKHYNLMVDMISRAGFLEEAEQFIKTMPIEKDAIIWGCLLSACRIYGNTEM 443
Query: 167 VDLAREVFDEI 177
A E +E+
Sbjct: 444 AKRAAEKVNEL 454
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 163/498 (32%), Positives = 263/498 (52%), Gaps = 38/498 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK HA +LD D +G+S+I+FY ++ L DA ++F +M +DV +WN L+S Y
Sbjct: 1397 GKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQ 1456
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
G+ L + + E + D +TL + SA A + GK HCY + LE + +
Sbjct: 1457 HHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVV 1516
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSR--------------------------------- 148
N+++ MYAKC+ +D+A ++FD R
Sbjct: 1517 ANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSV 1576
Query: 149 -RNIVSLNILINGYIDMELVDLAREVFDEI----VDKDIVLWRSMMHGCVKAKQPEEALE 203
N++S N +I G++ V+ A+++F ++ +++ W +++ G ++ EA+
Sbjct: 1577 PPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAIL 1636
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
F+KM + G+ P + SVL AC+ + +L YGR +H FI ++ V T+L+DMY+
Sbjct: 1637 FFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYA 1696
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KCGS++EA F+ K++ + MI A +G EAL +F ++++GI+P+ TF S
Sbjct: 1697 KCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTS 1756
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
+L+AC H+GL+ EG LF M + + P +EH+ C+V LLSR G L +A I MP +
Sbjct: 1757 ILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQ 1816
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443
+LL+AC + E +LG+ ++ ++ KL + YV LSN YA G W EV+ R
Sbjct: 1817 PDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMR 1876
Query: 444 RNMKELQTRKKPGNSIID 461
MK RK PG S I
Sbjct: 1877 DLMKVRGLRKNPGCSWIQ 1894
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 203/411 (49%), Gaps = 36/411 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GKG+H +V K + ++V +SL+ YG+ + DAR +FD M ++V +WN+++ Y
Sbjct: 1295 LGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYV 1354
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E + +F + EGI ++T+ SA A L+ L GK H A +LN
Sbjct: 1355 QNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIA-------ILN 1407
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+L L + +GS +IN Y + L++ A VF +++K
Sbjct: 1408 -----------------SLDLDNILGSS--------IINFYSKVGLIEDAELVFSRMLEK 1442
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W ++ V+ Q +AL + M E + D + S+LSA + SN++ G+ H
Sbjct: 1443 DVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGH 1502
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ ++ N+ D V ++IDMY+KC +++A F T +D+V W T++ A GL
Sbjct: 1503 CYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSG 1562
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL++FYQM+ + PN ++ SV+ +G + E +F +M + QP + + L
Sbjct: 1563 EALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSL-GFQPNLITWTTL 1621
Query: 361 VDLLSRAGLLYQAEEFIKIMPA---EDKFISYKALLSACITYSEFDLGKKV 408
+ L+++G Y+A F + M S ++L AC G+ +
Sbjct: 1622 ISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAI 1672
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 118/252 (46%), Gaps = 34/252 (13%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLN--MENALLLMYAKCKEMDEALRLFDEMGS 147
L C LH G+ +H K G + N +E L++ YAKC + A+RLF +
Sbjct: 1180 LLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRL-R 1238
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
RN+ S W +++ + E+AL F +
Sbjct: 1239 VRNVFS-------------------------------WAAIVGLQCRMGFSEDALLGFIE 1267
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M + GV PD V+ +VL AC SL + G+ VH ++L+ FV ++L+DMY KCG
Sbjct: 1268 MQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGV 1327
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
LE+A F K+VVTW +MI G GL EA+ VFY M +GI+P T S L+A
Sbjct: 1328 LEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSA 1387
Query: 328 CRHSGLITEGCQ 339
+ + EG Q
Sbjct: 1388 SANLDALIEGKQ 1399
>gi|297810955|ref|XP_002873361.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319198|gb|EFH49620.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 849
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/465 (33%), Positives = 256/465 (55%), Gaps = 5/465 (1%)
Query: 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
GK +H+++ + + L D VGN+LI FY R + A F M +D+ SWN ++ +
Sbjct: 349 GKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSMKDIISWNAILDAFA 408
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL---EY 117
D + L L L E I D +T++ L C ++ + K VH Y+ K GL E
Sbjct: 409 DSPKQFQFLNLLHHLFNEAITLDSVTILSLLKFCTNVQGIGKVKEVHGYSVKAGLLHNEE 468
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ NALL YAKC ++ A ++F + RR +V+ N L++GY++ D A+ +F E+
Sbjct: 469 EPKLGNALLDAYAKCGNVEYAHKIFQGLSERRTLVTYNSLLSGYVNSGSHDDAQMLFSEM 528
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
D+ W M+ ++ P EA+ +F+++ G+ P+ ++++L C+ L++L R
Sbjct: 529 STTDLTTWSLMVRIYAESCFPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVR 588
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
H +I++ + D +K L+D+Y+KCGSL+ A F +D+V +T M+ G A +G
Sbjct: 589 QCHGYIIRGRLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHG 647
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G EAL +F M IKP+ ++L AC H+GLI +G Q++ + V+ ++PT+E +
Sbjct: 648 RGKEALMIFSHMIDSNIKPDHVFITTLLTACCHAGLIQDGLQIYDSIRAVHGMKPTMEQY 707
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C VDLL+R G L A FI MP E + LL AC TY+ DLG VAN++++ +
Sbjct: 708 ACAVDLLARGGRLDDAYSFITQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAES 767
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+VL+SN YA + W V E R MK+ + +K G S +++
Sbjct: 768 DDTGNHVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEV 812
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 174/339 (51%), Gaps = 18/339 (5%)
Query: 2 GKGLHAHVT-KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +H++V ++ L + ++V NSL+ FY R+ +A LF +M +D+ SWN +++ Y
Sbjct: 246 GRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYA 305
Query: 61 DFSDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ + L LF L+ +G V+ D +T++ + CA+L L GK +H Y + Y+L
Sbjct: 306 SNHEWLKALQLFHNLVQKGDVSLDSVTILSILPVCAQLTDLTCGKEIHSYILR--HSYLL 363
Query: 120 ---NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID----MELVDLARE 172
++ NAL+ YA+ + A F M S ++I+S N +++ + D + ++L
Sbjct: 364 EDTSVGNALISFYARFGDTSAAYWAFSLM-SMKDIISWNAILDAFADSPKQFQFLNLLHH 422
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE---VMVSVLSACSS 229
+F+E + D V S++ C + + E+ + G+ +EE + ++L A +
Sbjct: 423 LFNEAITLDSVTILSLLKFCTNVQGIGKVKEVHGYSVKAGLLHNEEEPKLGNALLDAYAK 482
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
N++Y H+ + + +L+ Y GS ++A + F + D+ TW+ M
Sbjct: 483 CGNVEYA---HKIFQGLSERRTLVTYNSLLSGYVNSGSHDDAQMLFSEMSTTDLTTWSLM 539
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
+ A NEA+ VF +++ +G++PN T +++L C
Sbjct: 540 VRIYAESCFPNEAIGVFREIQARGMRPNTVTIMNLLPVC 578
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/416 (23%), Positives = 193/416 (46%), Gaps = 51/416 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMA-LFTDARVLFDKMPFRDVGSWNTLMSIYN 60
GK +H+++ KT L+ D VGN+L+ Y + + DA FD + +DV SWN +++ ++
Sbjct: 141 GKSMHSYIIKTGLEKDTLVGNALVSMYAKFGYIIPDAFTAFDDIADKDVVSWNAIIAGFS 200
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK---LHYGKTVHCYATKVG-LE 116
+ + F ++ E + T+ + CA + K G+ +H Y + L+
Sbjct: 201 ENKMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMGKNIAYRSGRQIHSYVVQRSWLQ 260
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + N+L+ Y + ++EA LF MGS +++VS N++I GY
Sbjct: 261 THVFVCNSLVSFYLRVGRIEEAASLFTRMGS-KDLVSWNVVIAGY--------------- 304
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQY 235
+ H +K AL+LF ++ +G V+ D ++S+L C+ L++L
Sbjct: 305 ----------ASNHEWLK------ALQLFHNLVQKGDVSLDSVTILSILPVCAQLTDLTC 348
Query: 236 GRLVHRFILQNN-ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
G+ +H +IL+++ + +D V ALI Y++ G A F KD+++W +++ A
Sbjct: 349 GKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSMKDIISWNAILDAFA 408
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
+ + L + + + + I + T +S+L C + +G + + G Y V+ +
Sbjct: 409 DSPKQFQFLNLLHHLFNEAITLDSVTILSLLKFCTN----VQGIGKVKEVHG-YSVKAGL 463
Query: 355 EH-------FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
H L+D ++ G + A + + + ++Y +LLS + D
Sbjct: 464 LHNEEEPKLGNALLDAYAKCGNVEYAHKIFQGLSERRTLVTYNSLLSGYVNSGSHD 519
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/360 (24%), Positives = 154/360 (42%), Gaps = 45/360 (12%)
Query: 76 IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135
+ G D + + ACA + +L G+ +H K+G + ++L MYAKC+ M
Sbjct: 13 LLSGFGTDHRVFLDVVKACASVSELTSGRALHGCVFKLGHIACTEVSKSVLNMYAKCRRM 72
Query: 136 DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195
D+ ++F +M S D V+W ++ G +
Sbjct: 73 DDCQKMFRQMDS--------------------------------VDPVVWNIVLTG-LSV 99
Query: 196 KQPEEALELFKKM--IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
E + FK M DE P +L C L + G+ +H +I++ + +D
Sbjct: 100 SCGRETMRFFKAMHFADEP-KPSSVTFAILLPVCVRLGDSYNGKSMHSYIIKTGLEKDTL 158
Query: 254 VKTALIDMYSKCGS-LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
V AL+ MY+K G + +A F KDVV+W +I G + + +A R F M ++
Sbjct: 159 VGNALVSMYAKFGYIIPDAFTAFDDIADKDVVSWNAIIAGFSENKMMADAFRSFCLMLKE 218
Query: 313 GIKPNEATFVSVLAACRHSG---LITEGCQLFRRMGGVYRVQPTIEHFVC--LVDLLSRA 367
+PN AT +VL C G G Q+ + V R FVC LV R
Sbjct: 219 PTEPNYATIANVLPVCASMGKNIAYRSGRQIHSYV--VQRSWLQTHVFVCNSLVSFYLRV 276
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427
G + +A M ++D +S+ +++ + E+ ++ +N+++ G+ S ++ +LS
Sbjct: 277 GRIEEAASLFTRMGSKD-LVSWNVVIAGYASNHEWLKALQLFHNLVQKGDVSLDSVTILS 335
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 158/477 (33%), Positives = 264/477 (55%), Gaps = 14/477 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK ++ ++ + + V S++ + + AR F+++ F+DV WN ++S Y
Sbjct: 129 VGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYT 188
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYML 119
+ + L +F++++ EG+ + IT+ SAC L L +G+ +H Y KV L+ L
Sbjct: 189 SKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDL 248
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI---------NGYIDMEL---V 167
+ N+L+ YAKC+ ++ A R F M + ++VS N ++ +G +E +
Sbjct: 249 LVGNSLVDYYAKCRSVEVARRKFG-MIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRM 307
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227
+A VF E+ +D+V+W S++ C ++ + AL+L ++M V + MVS L AC
Sbjct: 308 HIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPAC 367
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
S L+ L+ G+ +H+FI++ + F+ +LIDMY +CGS++++ F +D+V+W
Sbjct: 368 SKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWN 427
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
MI +G G +A+ +F Q G+KPN TF ++L+AC HSGLI EG + F+ M
Sbjct: 428 VMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE 487
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
Y + P +E + C+VDLLSRAG + EFI+ MP E + +LL AC + DL +
Sbjct: 488 YAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEY 547
Query: 408 VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
A + +L QS YVL++N Y+ G W + A+ R MKE K PG S I++K
Sbjct: 548 AARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKR 604
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 115/437 (26%), Positives = 190/437 (43%), Gaps = 76/437 (17%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +HA + +D ++G+ L+ Y + DAR +FDKM R+V SW +M +Y
Sbjct: 28 LGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYC 87
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D E + LF ++ EG+ D +F AC+ L+ GK V+ Y +G E
Sbjct: 88 GLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSC 147
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++ ++L M+ KC MD A R F+E +E D
Sbjct: 148 VKGSILDMFIKCGRMDIARRFFEE-------------------IEFKD------------ 176
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ +W M+ G + ++AL +F+KM+ EGV P+ + S +SAC++LS L++GR +H
Sbjct: 177 -VFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIH 235
Query: 241 RFILQ-NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM--IEGLANYG 297
+ ++ + D V +L+D Y+KC S+E A F D+V+W M + G YG
Sbjct: 236 GYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYG 295
Query: 298 LGNEALRVFYQMERKGIKPNEAT------FVSVLAACRHSGLITEGCQLFRRMG------ 345
G AL F +M +E + + S+++AC SG L R M
Sbjct: 296 DGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEV 355
Query: 346 ---------------GVYRVQPTIEHFV-------------CLVDLLSRAGLLYQAEEFI 377
R I F+ L+D+ R G + ++
Sbjct: 356 NTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIF 415
Query: 378 KIMPAEDKFISYKALLS 394
+MP D +S+ ++S
Sbjct: 416 DLMPQRD-LVSWNVMIS 431
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 32/248 (12%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ C +L L G VH G++ + + LL +Y + +++A R+FD+M S R
Sbjct: 16 ILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKM-SER 74
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N+ S W ++M EE ++LF M+
Sbjct: 75 NVFS-------------------------------WTAIMEMYCGLGDYEETIKLFYLMV 103
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+EGV PD V V ACS L N + G+ V+ ++L ++ VK +++DM+ KCG ++
Sbjct: 104 NEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMD 163
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
A F + + KDV W M+ G + G +AL VF +M +G+KPN T S ++AC
Sbjct: 164 IARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACT 223
Query: 330 HSGLITEG 337
+ L+ G
Sbjct: 224 NLSLLRHG 231
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 18/260 (6%)
Query: 213 VTPDE--EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
PDE E+ S+L C L NL+ G VH ++ N + F+ + L+++Y + G +E+
Sbjct: 4 TNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED 63
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F K ++V +WT ++E G E +++FY M +G++P+ F V AC
Sbjct: 64 ARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSE 123
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRAGLLYQAEEFIKIMPAEDKF 386
G ++ Y + E C ++D+ + G + A F + + +D F
Sbjct: 124 LKNYRVGKDVYD-----YMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVF 178
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSH-----EAYVLLSNFYALEGHWTEVAE 441
+ + ++S + EF V M+ G + + A +N L H E+
Sbjct: 179 M-WNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLR-HGREIHG 236
Query: 442 ARRNMKELQTRKKPGNSIID 461
++EL + GNS++D
Sbjct: 237 YCIKVEELDSDLLVGNSLVD 256
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 175/535 (32%), Positives = 263/535 (49%), Gaps = 74/535 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HAH L +D++V +LI Y R A F A +F KMP RDV +WN +++ Y +
Sbjct: 118 GRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYAN 177
Query: 62 FSDSGEVLI-LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL---EY 117
+ L G+ + TLV L A+ L G +VH Y + L E
Sbjct: 178 HGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEE 237
Query: 118 MLNMENALLLMYAKCKE-------------------------------MDEALRLFDEM- 145
+ + ALL MYAKCK M EA LF +M
Sbjct: 238 QVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDML 297
Query: 146 --------------------------------------GSRRNIVSLNILINGYIDMELV 167
G ++ + N L++ Y L+
Sbjct: 298 VEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLI 357
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227
+ A +FDEI KD + + +++ G V+ + EEA +FKKM V PD MVS++ AC
Sbjct: 358 NEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPAC 417
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
S L+ LQ+GR H ++ + + + +LIDMY+KCG ++ + F K +D+V+W
Sbjct: 418 SHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWN 477
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
TMI G +GLG EA +F M+ +G +P++ TF+ ++AAC HSGL+TEG F M
Sbjct: 478 TMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHK 537
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
Y + P +EH++C+VDLL+R G L +A +FI+ MP + + ALL AC + DLGK+
Sbjct: 538 YGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQ 597
Query: 408 VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
V+ + KLG + +VLLSN ++ G + E AE R K +K PG S I++
Sbjct: 598 VSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEI 652
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 150/322 (46%), Gaps = 45/322 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG LHA + K+ + +D+ GNSL+ Y + L +A +LFD++ +D S+ L+S Y
Sbjct: 324 MGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYV 383
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E ++FK++ + D T+V L AC+ L L +G+ H GL +
Sbjct: 384 QNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETS 443
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ MYAKC +D + ++FD+M + R+IVS N +I GY
Sbjct: 444 ICNSLIDMYAKCGRIDLSRQVFDKMPA-RDIVSWNTMIAGY------------------- 483
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR--- 237
+HG K EA LF M ++G PD+ + +++ACS + G+
Sbjct: 484 -------GIHGLGK-----EATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWF 531
Query: 238 --LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL- 293
+ H++ + + ++D+ ++ G L+EA K DV W ++
Sbjct: 532 DTMTHKYGILPRMEH----YICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACR 587
Query: 294 --ANYGLGNEALRVFYQMERKG 313
N LG + R+ ++ +G
Sbjct: 588 IHKNIDLGKQVSRMIQKLGPEG 609
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 161/372 (43%), Gaps = 42/372 (11%)
Query: 29 GRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLV 88
G++AL AR +FD++P D ++N L+ Y+ + L++ +++ + +K T
Sbjct: 47 GQLAL---ARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFP 103
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ AC+ L L G+T+H +A VGL L + AL+ +Y +C A +F +M R
Sbjct: 104 FVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMR 163
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
D+V W +M+ G A+ M
Sbjct: 164 --------------------------------DVVAWNAMLAGYANHGMYHHAIAHLLDM 191
Query: 209 IDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD---AFVKTALIDMYSK 264
D G+ P+ +VS+L + L G VH + L+ + Q+ + TAL+DMY+K
Sbjct: 192 QDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAK 251
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV-S 323
C L A F+ ++ VTW+ +I G EA +F M +G+ AT V S
Sbjct: 252 CKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVAS 311
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
L C + G QL + + + L+ + ++AGL+ +A + +
Sbjct: 312 ALRVCASLADLRMGTQLHALLAKS-GIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIK 370
Query: 384 DKFISYKALLSA 395
D ISY ALLS
Sbjct: 371 DT-ISYGALLSG 381
>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
Length = 629
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 154/468 (32%), Positives = 254/468 (54%), Gaps = 38/468 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H + K L+ D+++G++L++ Y + L A+V F+++P RDV WN +++ Y
Sbjct: 156 KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 215
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
VL F+++ E +V + T+ S A + L+ G+ +H +A K+G + + +
Sbjct: 216 GQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 275
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N+L+ MY KCK +++AL E+F+ + +KDI
Sbjct: 276 NSLIDMYGKCKCIEDAL--------------------------------EIFEMMREKDI 303
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W S++ + + L L +M+ G+ PD + +VL ACS L+ L +GR +H +
Sbjct: 304 FSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGY 363
Query: 243 ILQNNITQDA------FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
++ + + +D +K A+IDMY+KCGS+ +A + F + KDV +W MI G +
Sbjct: 364 MIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMH 423
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G GNEAL +F +M +KP+E TFV VL+AC H+G +++G +M Y V PTIEH
Sbjct: 424 GYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEH 483
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C++D+L RAG L +A E MP E + ++ALL+AC + L + A + +L
Sbjct: 484 YTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELE 543
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ +YVL+SN Y G + EV E R M++ RK PG S I+LK+
Sbjct: 544 PEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKN 591
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 45/280 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K DS + V NSLI YG+ DA +F+ M +D+ SWN+++S++
Sbjct: 256 GRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQ 315
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY---- 117
D L L +++ GI D +T+ + AC+ L L +G+ +H Y GL
Sbjct: 316 CGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKD 375
Query: 118 --MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ ++NA++ MYAKC M +A +F+ M S +++ S NI+I GY
Sbjct: 376 IDDVLLKNAVIDMYAKCGSMRDAHLVFERM-SNKDVASWNIMIMGY-------------- 420
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
MHG EALE+F +M + + PDE V VLSACS +
Sbjct: 421 ------------GMHG-----YGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQ 463
Query: 236 GRLVHRFILQNNITQDAFVK----TALIDMYSKCGSLEEA 271
GR F++Q D T +IDM + G L+EA
Sbjct: 464 GR---NFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEA 500
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 126/276 (45%), Gaps = 21/276 (7%)
Query: 154 LNILINGYIDMELVDLAREVF-----DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
L L++ ++ +E ++L D + ++ + +++ G + PEE E ++KM
Sbjct: 72 LETLVSSFVQLE-IELPSNTLKAGENDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKM 130
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+EGV PD+ + AC + + + +H + + + D F+ +AL++ Y K G +
Sbjct: 131 RNEGVMPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYLKFGLM 187
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E A V F + +DVV W M+ G A G L F +M + + P+ T L+
Sbjct: 188 EHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVF 247
Query: 329 R-----HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
++G I G + +MG Y + + L+D+ + + A E ++M +
Sbjct: 248 AVMGDLNNGRIIHGFAM--KMG--YDSGVAVSN--SLIDMYGKCKCIEDALEIFEMMREK 301
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
D F S+ +++S + D ++ + M+ G Q
Sbjct: 302 DIF-SWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQP 336
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 158/459 (34%), Positives = 243/459 (52%), Gaps = 32/459 (6%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HA ++ L+ + V +++ Y + ARV+FD MP ++ SWN ++ Y DS
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
E L LF +++ EG+ ++++ AC L L G VH ++GL+
Sbjct: 244 REALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLD--------- 294
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
N+ +N LI Y + VDLA VFDE+ + V W
Sbjct: 295 -----------------------SNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSW 331
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+M+ GC + E+A+ LF +M E V PD +VSV+ A + +S+ R +H + ++
Sbjct: 332 NAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIR 391
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
++ QD +V TALIDMY+KCG + A + F + V+TW MI G ++G G A+ +
Sbjct: 392 LHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVEL 451
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F +M+ GI PNE TF+SVL+AC H+GL+ EG + F M Y ++P +EH+ +VDLL
Sbjct: 452 FEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLG 511
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
RAG L +A FI+ MP + Y A+L AC + +L ++ A + +LG Q +VL
Sbjct: 512 RAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVL 571
Query: 426 LSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
L+N YA W +VA R M++ +K PG SII LK+
Sbjct: 572 LANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKN 610
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 161/328 (49%), Gaps = 35/328 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ +HA + +DS+ +L + Y + DAR +FD+MP RD +WN L++ Y
Sbjct: 78 GRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYAR 137
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N + +++ Q EG D ITLV + ACA L + H +A + GLE ++
Sbjct: 138 NGLARMAMEMVVRMQE-EEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELV 196
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N+ A+L Y KC ++ A +FD M + +N VS N +I+GY
Sbjct: 197 NVATAILDAYCKCGDIRAARVVFDWMPT-KNSVSWNAMIDGY------------------ 237
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+ EAL LF +M++EGV + +++ L AC L L G V
Sbjct: 238 -------------AQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRV 284
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +++ + + V ALI MYSKC ++ A F + D + V+W MI G A G
Sbjct: 285 HELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCS 344
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAA 327
+A+R+F +M+ + +KP+ T VSV+ A
Sbjct: 345 EDAVRLFTRMQLENVKPDSFTLVSVIPA 372
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 123/286 (43%), Gaps = 34/286 (11%)
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
SD L F + G T L CA L G+ VH G++
Sbjct: 38 SDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAA 97
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
AL MYAKC+ +A R+FD M R+ V+ N L+ GY L +A E+
Sbjct: 98 TALANMYAKCRRPADARRVFDRM-PVRDRVAWNALVAGYARNGLARMAMEM--------- 147
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
+ + +EG PD +VSVL AC++ L R H F
Sbjct: 148 ---------------------VVRMQEEEGERPDSITLVSVLPACANARALAACREAHAF 186
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+++ + + V TA++D Y KCG + A V F K+ V+W MI+G A G EA
Sbjct: 187 AIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREA 246
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC---QLFRRMG 345
L +F +M +G+ + + ++ L AC G + EG +L R+G
Sbjct: 247 LALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG 292
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
+ +H + + LD D+YV +LI Y + AR+LF+ R V +WN ++ Y
Sbjct: 382 ARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGS 441
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV----GLEY 117
+ LF+++ GIV ++ T + + SAC+ + G+ Y T + GLE
Sbjct: 442 HGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGRE---YFTSMKEDYGLEP 498
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEM 145
+ ++ + + ++DEA +M
Sbjct: 499 GMEHYGTMVDLLGRAGKLDEAWAFIQKM 526
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 158/459 (34%), Positives = 243/459 (52%), Gaps = 32/459 (6%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HA ++ L+ + V +++ Y + ARV+FD MP ++ SWN ++ Y DS
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
E L LF +++ EG+ ++++ AC L L G VH ++GL+
Sbjct: 244 REALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLD--------- 294
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
N+ +N LI Y + VDLA VFDE+ + V W
Sbjct: 295 -----------------------SNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSW 331
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+M+ GC + E+A+ LF +M E V PD +VSV+ A + +S+ R +H + ++
Sbjct: 332 NAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIR 391
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
++ QD +V TALIDMY+KCG + A + F + V+TW MI G ++G G A+ +
Sbjct: 392 LHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVEL 451
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F +M+ GI PNE TF+SVL+AC H+GL+ EG + F M Y ++P +EH+ +VDLL
Sbjct: 452 FEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLG 511
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
RAG L +A FI+ MP + Y A+L AC + +L ++ A + +LG Q +VL
Sbjct: 512 RAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVL 571
Query: 426 LSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
L+N YA W +VA R M++ +K PG SII LK+
Sbjct: 572 LANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKN 610
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 161/328 (49%), Gaps = 35/328 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ +HA + +DS+ +L + Y + DAR +FD+MP RD +WN L++ Y
Sbjct: 78 GRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYAR 137
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N + +++ Q EG D ITLV + ACA L + H +A + GLE ++
Sbjct: 138 NGLARMAMEMVVRMQE-EEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELV 196
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N+ A+L Y KC ++ A +FD M + +N VS N +I+GY
Sbjct: 197 NVATAILDAYCKCGDIRAARVVFDWMPT-KNSVSWNAMIDGY------------------ 237
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+ EAL LF +M++EGV + +++ L AC L L G V
Sbjct: 238 -------------AQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRV 284
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +++ + + V ALI MYSKC ++ A F + D + V+W MI G A G
Sbjct: 285 HELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCS 344
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAA 327
+A+R+F +M+ + +KP+ T VSV+ A
Sbjct: 345 EDAVRLFTRMQLENVKPDSFTLVSVIPA 372
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 123/286 (43%), Gaps = 34/286 (11%)
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
SD L F + G T L CA L G+ VH G++
Sbjct: 38 SDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAA 97
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
AL MYAKC+ +A R+FD M R+ V+ N L+ GY L +A E+
Sbjct: 98 TALANMYAKCRRPADARRVFDRM-PVRDRVAWNALVAGYARNGLARMAMEM--------- 147
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
+ + +EG PD +VSVL AC++ L R H F
Sbjct: 148 ---------------------VVRMQEEEGERPDSITLVSVLPACANARALAACREAHAF 186
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+++ + + V TA++D Y KCG + A V F K+ V+W MI+G A G EA
Sbjct: 187 AIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREA 246
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC---QLFRRMG 345
L +F +M +G+ + + ++ L AC G + EG +L R+G
Sbjct: 247 LALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG 292
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
+ +H + + LD D+YV +LI Y + AR+LF+ R V +WN ++ Y
Sbjct: 382 ARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGS 441
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV----GLEY 117
+ LF+++ GIV ++ T + + SAC+ + G+ Y T + GLE
Sbjct: 442 HGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGRE---YFTSMKEDYGLEP 498
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEM 145
+ ++ + + ++DEA +M
Sbjct: 499 GMEHYGTMVDLLGRAGKLDEAWAFIQKM 526
>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 180/531 (33%), Positives = 268/531 (50%), Gaps = 71/531 (13%)
Query: 4 GLHAHV--TKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GL AH KT+ D++VG+SLI+ Y ++ DAR +FD +P R+ SW T++S Y
Sbjct: 132 GLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAM 191
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E LF + E DK + SA + +HYGK +HC A K GL + ++
Sbjct: 192 ERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASV 251
Query: 122 ENALLLMYAKCKEMD-------------------------------EALRLFDEM---GS 147
NAL+ MY KC +D EAL LF M G+
Sbjct: 252 GNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGN 311
Query: 148 RRNIVSLNILINGYIDM--------------------------ELVDL---------ARE 172
+ + + +IN D+ LVD+ AR+
Sbjct: 312 KPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARK 371
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
FD + + DIVLW SM+ G + + E AL L+ +M E + P E M SVL ACSSL+
Sbjct: 372 GFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAA 431
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L+ G+ +H ++ + + + +AL MY+KCGSLE+ + F + +D++TW MI G
Sbjct: 432 LEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISG 491
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
L+ G G +AL +F ++ KP+ TFV+VL+AC H GL+ G FR M + + P
Sbjct: 492 LSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVP 551
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
+EH+ C+VD+LSRAG L++ +EFI+ + ++ LL AC Y ++LG +
Sbjct: 552 RVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKL 611
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
M+LG+Q AY+LLS+ Y G +V RR MK K+PG S I+LK
Sbjct: 612 MELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIELK 662
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 131/453 (28%), Positives = 209/453 (46%), Gaps = 73/453 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA + +T S +Y+ NSL++ Y + A+++F+ + +DV SWN L++ Y+
Sbjct: 29 GKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQ 88
Query: 62 FSDSGE--VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
G V+ LF+++ E + + T +F+A + + G H A K Y +
Sbjct: 89 KGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDV 148
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ ++L+ MY K M +A ++FD + RN VS +I+GY + R F
Sbjct: 149 FVGSSLINMYCKIGCMLDARKVFDTI-PERNTVSWATIISGYA------MERMAF----- 196
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
EA ELF M E D+ + SVLSA + + YG+ +
Sbjct: 197 --------------------EAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQI 236
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H L+N + A V AL+ MY KCG L++AL TF + KD +TW+ MI G A G
Sbjct: 237 HCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDS 296
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG-------------CQLF----- 341
+EAL +FY M G KP+E TFV V+ AC G + EG CQ++
Sbjct: 297 HEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTAL 356
Query: 342 ------------RRMGGVYRVQPTIEHFVCLVDLLSRAG------LLYQAEEFIKIMPAE 383
R G Y +P I + ++ ++ G LY + +IMP E
Sbjct: 357 VDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHE 416
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
++ ++L AC + + + GK++ +K G
Sbjct: 417 ---LTMASVLRACSSLAALEQGKQIHAQTIKYG 446
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 111/257 (43%), Gaps = 34/257 (13%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
+ V L C R + L GK +H + G + + N+L+ +YAKC + +A
Sbjct: 12 SFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKA------- 64
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA--LE 203
+ VF+ I +KD+V W +++G + + +E
Sbjct: 65 -------------------------KLVFESITNKDVVSWNCLINGYSQKGTVGYSFVME 99
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
LF++M E P+ V +A SS G H ++ + D FV ++LI+MY
Sbjct: 100 LFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYC 159
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
K G + +A F ++ V+W T+I G A + EA +F M R+ ++ + S
Sbjct: 160 KIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTS 219
Query: 324 VLAACRHSGLITEGCQL 340
VL+A L+ G Q+
Sbjct: 220 VLSALTVPDLVHYGKQI 236
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 14/190 (7%)
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ P V +L C+ +LQ G+ +H +L+ ++ +L+++Y+KCGS+ +A
Sbjct: 6 LPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAK 65
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEA--LRVFYQMERKGIKPNEATFVSVLAACRH 330
+ F KDVV+W +I G + G + + +F +M + PN TF V A
Sbjct: 66 LVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASS 125
Query: 331 SGLITEGCQ---LFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDK 385
S G Q L + Y V FV L+++ + G + A + +P E
Sbjct: 126 SPETFGGLQAHALAIKTSNFYDV------FVGSSLINMYCKIGCMLDARKVFDTIP-ERN 178
Query: 386 FISYKALLSA 395
+S+ ++S
Sbjct: 179 TVSWATIISG 188
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA K ++ +G++L Y + D ++F +MP RD+ +WN ++S +
Sbjct: 435 GKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQ 494
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
+ + L LF++L D +T V + SAC+ + + GK
Sbjct: 495 NGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGK 537
>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
Length = 709
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 154/468 (32%), Positives = 255/468 (54%), Gaps = 38/468 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H + K L+ D+++G++L++ Y + L A+V F+++P RDV WN +++ Y
Sbjct: 156 KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 215
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
VL F+++ E +V + T+ + S A + L+ G+ +H +A K+G + + +
Sbjct: 216 GQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 275
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N+L+ MY KCK +++AL E+F+ + +KDI
Sbjct: 276 NSLIDMYGKCKCIEDAL--------------------------------EIFEMMREKDI 303
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W S++ + + L L +M+ G+ PD + +VL ACS L+ L +GR +H +
Sbjct: 304 FSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGY 363
Query: 243 ILQNNITQDA------FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
++ + + +D +K A+IDMY+KCGS+ +A + F + KDV +W MI G +
Sbjct: 364 MIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMH 423
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G GNEAL +F +M +KP+E TFV VL+AC H+G +++G +M Y V PTIEH
Sbjct: 424 GYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEH 483
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C++D+L RAG L +A E MP E + ++ALL+AC + L + A + +L
Sbjct: 484 YTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELE 543
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ +YVL+SN Y G + EV E R M++ RK PG S I+LK+
Sbjct: 544 PEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKN 591
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 134/281 (47%), Gaps = 47/281 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K DS + V NSLI YG+ DA +F+ M +D+ SWN+++S++
Sbjct: 256 GRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQ 315
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL------ 115
D L L +++ GI D +T+ + AC+ L L +G+ +H Y GL
Sbjct: 316 CGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKD 375
Query: 116 -EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF 174
+ +L ++NA++ MYAKC M +A +F+ M S +++ S NI+I GY
Sbjct: 376 IDDVL-LKNAVIDMYAKCGSMRDAHLVFERM-SNKDVASWNIMIMGY------------- 420
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
MHG EALE+F +M + + PDE V VLSACS +
Sbjct: 421 -------------GMHG-----YGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVS 462
Query: 235 YGRLVHRFILQNNITQDAFVK----TALIDMYSKCGSLEEA 271
GR F++Q D T +IDM + G L+EA
Sbjct: 463 QGR---NFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEA 500
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 144/339 (42%), Gaps = 46/339 (13%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T + A A + L GK +H Y G +L+ MY+KC +M+ AL +F +
Sbjct: 39 TCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDP 98
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
N+ + N +I+G+I PEE E +
Sbjct: 99 THEINVFAFNAIISGFITNGF-------------------------------PEEGFEFY 127
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+KM +EGV PD+ + AC + + + +H + + + D F+ +AL++ Y K
Sbjct: 128 QKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYLKF 184
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G +E A V F + +DVV W M+ G A G L F +M + + P+ T VL
Sbjct: 185 GLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVL 244
Query: 326 AACR-----HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
+ ++G I G + +MG Y + + L+D+ + + A E ++M
Sbjct: 245 SVFAVMGDLNNGRIIHGFAM--KMG--YDSGVAVSN--SLIDMYGKCKCIEDALEIFEMM 298
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+D F S+ +++S + D ++ + M+ G Q
Sbjct: 299 REKDIF-SWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQP 336
>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
Length = 670
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 254/463 (54%), Gaps = 6/463 (1%)
Query: 5 LHAHVTKTALDSD--IYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
LH+H+ + ++ N LI YG+ AR LF+ MP R+V +W M+ ++
Sbjct: 82 LHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHN 141
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK--LHYGKTVHCYATKVGLEYMLN 120
E L+ F+++ G D++T ++ +A A++ + G+ +H YA GL +
Sbjct: 142 GCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVV 201
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ A++ MY KC +D+A F+E+ +N V+ N ++ Y A E+F E+ D
Sbjct: 202 VGTAVISMYGKCGRLDDARAAFEEL-QWKNSVTWNAMMTNYKLDGRDREALELFREMHDA 260
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D V W +M+ + + ++AL+L++ M D + P + V+V+ C+ LS L+ GR +
Sbjct: 261 DSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAI 320
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + N + V AL+ MY KCG L+EAL F+ KD ++W T+I A +G
Sbjct: 321 HARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHS 380
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
++AL ++ +M+ +G+KP E TFV +L+AC H GL+ +G F RM +R++P++ HF C
Sbjct: 381 DQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGC 440
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
++DLL R G L +AE +K MP + + + +LL AC T+ + G + A+ ++ +
Sbjct: 441 IIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWT 500
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA G W +V + R+ M +K PG S I++
Sbjct: 501 SGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEI 543
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 95/421 (22%), Positives = 163/421 (38%), Gaps = 113/421 (26%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + + L ++ VG ++I YG+ DAR F+++ +++ +WN +M+ Y
Sbjct: 184 GREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKL 243
Query: 62 FSDSGEVLILFKQL------IFEGIVA--------------------------DKITLVI 89
E L LF+++ + ++A + T V
Sbjct: 244 DGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVT 303
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ CA L L G+ +H + L + NAL+ MY KC +DEAL +F M +
Sbjct: 304 VIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSM-KLK 362
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+ +S N +I+ Y HG ++AL L+++M
Sbjct: 363 DEISWNTIISSY--------------------------AYHG-----HSDQALLLYQEMD 391
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLV-------HRFILQNNITQDAFVKTALIDMY 262
+GV P E V +LSACS +G LV +R + I +ID+
Sbjct: 392 LQGVKPTEVTFVGLLSACS------HGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLL 445
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
+ G L EA + ++ I+ N ++
Sbjct: 446 GRGGRLAEAELV----------------------------------LKSMPIQANAVQWM 471
Query: 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382
S+L AC+ G + G + ++ V RV T +V L ++ + AG E+ KIM A
Sbjct: 472 SLLGACKTHGDLKRGVRAADQV--VDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAA 529
Query: 383 E 383
Sbjct: 530 R 530
>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
Length = 778
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/464 (35%), Positives = 250/464 (53%), Gaps = 36/464 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G HAHV +SD++V NSL+ YGR F +R +F++MP R+V SW++++ Y
Sbjct: 118 LGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYA 177
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L+LF +++ EGI ++ ++V +A A + + H GL+ +
Sbjct: 178 HNGRYEEGLLLFWRMLNEGIAPNRGSIV---NAMACIHREHEADDFCRVVIDNGLDSDQS 234
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++NA + MYA+C +D+AR F I+DK
Sbjct: 235 VQNAAMGMYARCGR--------------------------------IDVARRFFYGILDK 262
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W SM+ V+A P ALELFK+M G+ PD ++S++ A S+L++ Q R VH
Sbjct: 263 DLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVH 322
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I ++ + TA+ID+Y KCG+LE A F + +++++W+TMI G +G G
Sbjct: 323 GVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGR 382
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F QM + IKP+ FV VL+AC H GLI EG + F+ M + V P EH+ C+
Sbjct: 383 EALCLFDQM-KASIKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACM 441
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +A+ FI+ MP + ALL AC +S + + A ++ L ++
Sbjct: 442 VDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNLETAETAARHLFNLDAENP 501
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
Y+LLSN YA G E + R MK RK G++II++K+
Sbjct: 502 GRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTIIEIKN 545
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 1/174 (0%)
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
LI Y + + A +F ++ LW ++ +L L+ +M+ G+
Sbjct: 40 LIAQYASLGSISHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQAT 99
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
+L AC L++ + G H ++ D FV +L+ MY + G + + F
Sbjct: 100 NFTFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFE 159
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
+ ++VV+W++M+ A+ G E L +F++M +GI PN + V+ + AC H
Sbjct: 160 RMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAM-ACIH 212
>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 646
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/451 (34%), Positives = 248/451 (54%), Gaps = 3/451 (0%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILF- 72
+ + GN+L+H Y L DAR LFD+M RDV SW TL+ Y E +F
Sbjct: 162 IGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFC 221
Query: 73 KQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKC 132
+ ++ E + +++TLV SA ++ L G+TVH + G +N+ENAL+ M+ KC
Sbjct: 222 RMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKC 281
Query: 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC 192
+ A +FD M +++ S +++ Y ++ A ++F EI ++++V W M+
Sbjct: 282 GCVAAAKEVFDGM-PIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAY 340
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQD 251
A P+EA+ +F MI GV P + +VSVLSAC+ L +L G L +I+ + +
Sbjct: 341 SHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELT 400
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
+ A IDM++KCG + A F + K+VV+W TMI +G EAL +F + +
Sbjct: 401 PNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKG 460
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY 371
GI P+EAT++ VL+AC H GL++EG F+ M VY ++P EH+ C++DLL + GLL
Sbjct: 461 NGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQ 520
Query: 372 QAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431
+A E + MP + ALL+AC + ++GK A+ + L YVL+S YA
Sbjct: 521 EAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYA 580
Query: 432 LEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ W +V R M++ + +K PG S I++
Sbjct: 581 SKSKWGQVKMLRTVMRDRRVKKNPGCSSIEV 611
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 129/305 (42%), Gaps = 65/305 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + ++ + + N+L+ +G+ A+ +FD MP +DV SW +++S Y
Sbjct: 251 LGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYA 310
Query: 61 DFSD-------------------------------SGEVLILFKQLIFEGIVADKITLVI 89
D E + +F +I G+ TLV
Sbjct: 311 KCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVS 370
Query: 90 LFSACARLEKLHYGKTVH-CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ SACA+L L G ++ Y +E N+ NA + M+AKC ++ A RLF M
Sbjct: 371 VLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNM-ED 429
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+N+VS N +I + +HG QPEEAL LF++
Sbjct: 430 KNVVSWNTMIMAH--------------------------GLHG-----QPEEALHLFQEF 458
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI-LQNNITQDAFVKTALIDMYSKCGS 267
G+ PDE + VLSACS + GR + + + I A +ID+ K G
Sbjct: 459 KGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGL 518
Query: 268 LEEAL 272
L+EA
Sbjct: 519 LQEAF 523
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 111/214 (51%), Gaps = 12/214 (5%)
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
+MM G ++A +P AL LF++++ + + D +V + A ++ S+ +H +
Sbjct: 102 TMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPT--EAIHCVAFKR 159
Query: 247 N-ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
I Q AL+ MY+ L +A F + +DVV+WTT+I+G A GL +EA RV
Sbjct: 160 GFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRV 219
Query: 306 FYQM-ERKGIKPNEATFVSVLAACRHSGLITEG---CQLFRRMGGVYRVQPTIEHFVCLV 361
F +M + + PNE T V+ +A GL+ G Q GG R+ +E+ LV
Sbjct: 220 FCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGG--RMSVNLEN--ALV 275
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
D+ + G + A+E MP +D + S+ +++SA
Sbjct: 276 DMFGKCGCVAAAKEVFDGMPIKDVY-SWTSMVSA 308
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 154/465 (33%), Positives = 247/465 (53%), Gaps = 35/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSI 58
MG+ +HA V + D+D++V N LI Y + AR +F+ +P R + SW ++S
Sbjct: 137 MGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSA 196
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y + E L +F + + D + LV + +A L+ L G+++H K+GLE
Sbjct: 197 YAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIE 256
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ +L MYAKC ++ A LFD+M S
Sbjct: 257 PDLLISLNTMYAKCGQVATAKILFDKMKS------------------------------- 285
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+++LW +M+ G K EA+++F +MI++ V PD + S +SAC+ + +L+ R
Sbjct: 286 -PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARS 344
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
++ ++ +++ D F+ +ALIDM++KCGS+E A + F +T +DVV W+ MI G +G
Sbjct: 345 MYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGR 404
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EA+ ++ MER G+ PN+ TF+ +L AC HSG++ EG F M +++ P +H+
Sbjct: 405 AREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMAD-HKINPQQQHYA 463
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C++DLL RAG L QA E IK MP + + ALLSAC + +LG+ A + +
Sbjct: 464 CVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPS 523
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ YV LSN YA W VAE R MKE K G S ++++
Sbjct: 524 NTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVR 568
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 170/367 (46%), Gaps = 33/367 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HA + L ++ LIH T AR +FD +P + WN ++ Y+
Sbjct: 38 KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ + L+++ + + D T L AC+ L L G+ VH ++G + + ++
Sbjct: 98 NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N L+ +YAKC+ + A +F+ + + ++ I
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGL------------------------------PLPERTI 187
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +++ + +P EALE+F M V PD +VSVL+A + L +L+ GR +H
Sbjct: 188 VSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHAS 247
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+++ + + + +L MY+KCG + A + F K +++ W MI G A G EA
Sbjct: 248 VVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREA 307
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG-GVYRVQPTIEHFVCLV 361
+ +F++M K ++P+ + S ++AC G + + ++ +G YR I L+
Sbjct: 308 IDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISS--ALI 365
Query: 362 DLLSRAG 368
D+ ++ G
Sbjct: 366 DMFAKCG 372
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/472 (33%), Positives = 247/472 (52%), Gaps = 42/472 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK H +SD++V ++LI Y + ++ARVLFD++P R++ +W +L++ Y
Sbjct: 101 GKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQ 160
Query: 62 FSDSGEVLILFKQLIFE---------GIVADKITLVILFSACARLEKLHYGKTVHCYATK 112
D+ E L++FK+ +FE G D + ++ + SAC+R+ + VH A K
Sbjct: 161 NDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIK 220
Query: 113 VGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLARE 172
VGL+ ++ +EN LL YAKC E+ + ++FD+M +
Sbjct: 221 VGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEK------------------------ 256
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS-VLSACSSLS 231
D+V W SM+ + +A E+F M+ G EV +S +L AC+
Sbjct: 257 --------DVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEG 308
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L+ G +H +++ + + T++IDMY KCG E A F K+V +WT MI
Sbjct: 309 ALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIA 368
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
G +G EAL VFYQM G+KPN TF+SVLAAC H+G + EG + F M Y V+
Sbjct: 369 GYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVE 428
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
P +EH+ C+VDLL RAG + +A IK M F+ + +LL+AC + + +L + A
Sbjct: 429 PGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARE 488
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ KL + YVLL+N YA G W +V R +K+ K PG S+++LK
Sbjct: 489 LFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELK 540
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 149/308 (48%), Gaps = 25/308 (8%)
Query: 32 ALFTDARVLFDKMPFR-DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
A T+ LF+K R DV SWN+L++ DS E L F + I ++ T
Sbjct: 29 ATNTNLTTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCA 88
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
+C+ L L+ GK H A G E L + +AL+ MY+KC ++ A LFDE+ RRN
Sbjct: 89 IKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEI-PRRN 147
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
IV+ LI GY+ + A VF K+ + +S +G EE
Sbjct: 148 IVTWTSLITGYVQNDDAHEALMVF-----KEFLFEKSEGNG-------EEV--------- 186
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G + D M+SVLSACS +SN VH ++ + + V+ L+D Y+KCG +
Sbjct: 187 -GTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSL 245
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACR 329
+ F KDVV+W +MI A GL +A VF+ M + G K NE T ++L AC
Sbjct: 246 SRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACA 305
Query: 330 HSGLITEG 337
H G + G
Sbjct: 306 HEGALRVG 313
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 134/294 (45%), Gaps = 37/294 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ +G+H K LD + V N+L+ Y + + +R +FD M +DV SWN+++++Y
Sbjct: 210 VSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYA 269
Query: 61 DFSDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
S + +F ++ G +++TL L ACA L G +H K+G +
Sbjct: 270 QNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNV 329
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
M +++ MY KC + + A FD M +N+ S +I GY
Sbjct: 330 IMATSIIDMYCKCGQAEMARNAFDGM-KEKNVRSWTAMIAGY------------------ 370
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RL 238
MHG + EAL++F +MI GV P+ +SVL+ACS L+ G R
Sbjct: 371 --------GMHGFAR-----EALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRW 417
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMI 290
+ + N+ ++D+ + G ++EA L+ K +D V W +++
Sbjct: 418 FNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVR-RDFVLWGSLL 470
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 13/183 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH V K +++ + S+I Y + AR FD M ++V SW +++ Y
Sbjct: 312 VGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYG 371
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-----KTVHCYATKVGL 115
+ E L +F Q+I+ G+ + IT + + +AC+ L G H Y + G+
Sbjct: 372 MHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGV 431
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDL-AR 171
E+ M + L + + EA L M RR+ V L+ + D+EL ++ AR
Sbjct: 432 EHYGCMVDLL----GRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISAR 487
Query: 172 EVF 174
E+F
Sbjct: 488 ELF 490
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/461 (34%), Positives = 254/461 (55%), Gaps = 3/461 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF--YGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K H+ + + L +D +I F + A +FDK+P D +NT+ Y
Sbjct: 37 KQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYL 96
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + + ++ +++ + + +K T L AC + GK +H + K G
Sbjct: 97 RWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGF 156
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
N L+ MY + +++A R+FD M +R++VS LI GY VD AREVF+ + ++
Sbjct: 157 SLNNLIHMYVNFQSLEQARRVFDNM-PQRDVVSWTSLITGYSQWGFVDKAREVFELMPER 215
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ V W +M+ V++ + EA LF +M E V D+ V S+LSAC+ L L+ G+ +H
Sbjct: 216 NSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIH 275
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I ++ I D+ + T +IDMY KCG LE+A F + K + +W MI GLA +G G
Sbjct: 276 GYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGE 335
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ +F +MER+ + P+ TFV+VL+AC HSGL+ EG F+ M V ++P +EHF C+
Sbjct: 336 AAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCM 395
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A + I MP AL+ AC + +LG+++ +++L +
Sbjct: 396 VDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNS 455
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YVLL+N YA G W +VA+ R+ M + +K PG S+I+
Sbjct: 456 GRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIE 496
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 165/411 (40%), Gaps = 100/411 (24%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HAHV K +D + N+LIH Y AR +FD MP RDV SW +L++ Y+
Sbjct: 139 GKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQ 198
Query: 62 --FSDSG-----------------------------EVLILFKQLIFEGIVADKITLVIL 90
F D E LF ++ E +V DK +
Sbjct: 199 WGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASM 258
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SAC L L GK +H Y K G+E + ++ MY KC +++A +F+E+ ++
Sbjct: 259 LSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNEL-PQKG 317
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
I S N +I G MHG + E A+ELFK+M
Sbjct: 318 ISSWNCMIGGL--------------------------AMHG-----KGEAAIELFKEMER 346
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
E V PD V+VLSAC+ ++ G+ H F + L+
Sbjct: 347 EMVAPDGITFVNVLSACAHSGLVEEGK--HYFQYMTEVL-----------------GLKP 387
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
+ F M++ L GL EA ++ +M + P+ +++ ACR
Sbjct: 388 GMEHF-----------GCMVDLLGRAGLLEEARKLINEMP---VNPDAGVLGALVGACRI 433
Query: 331 SGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
G G Q+ ++ V ++P +V L +L + AG + K+M
Sbjct: 434 HGNTELGEQIGKK---VIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLM 481
>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 171/534 (32%), Positives = 274/534 (51%), Gaps = 71/534 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
+ +H KTA D++VG+SL++FY ++ +AR LFD+MP R++ SW T++S Y
Sbjct: 131 ARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYAS 190
Query: 62 FSDSGEVLILFKQL-IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L +F + + EG + ++ + SA E + GK VHC K G+ ++
Sbjct: 191 KQMAKEALGVFGLMRLVEGNL-NEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVS 249
Query: 121 MENALLLMYAKCKEMD-------------------------------EALRLFDEM---- 145
+ NAL+ MYAKC ++ +AL+LF +M
Sbjct: 250 VLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAG 309
Query: 146 ----------------------------------GSRRNIVSLNILINGYIDMELVDLAR 171
G I + L++ Y AR
Sbjct: 310 FVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDAR 369
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
+ FD +++ D+VLW S++ G V+ + EEAL ++ +M + P+E M SVL ACS+L+
Sbjct: 370 KGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLA 429
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L+ G+ +H ++ + + +++AL MY+KCGSLEE ++ F + +D+V+W MI
Sbjct: 430 ALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMIS 489
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
GL+ G G EAL +F +M +G KP+ TFV+VL+AC H G++ G F M + +
Sbjct: 490 GLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLV 549
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
P +EH+ C+VD+LSRAG L +A+EFI+ + ++ LL AC + ++LG
Sbjct: 550 PRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMCLWRILLPACRNHCNYELGAYAGEK 609
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+M+LG++ AYVLLS+ Y G +V RR MK RK+ G S I+LK +
Sbjct: 610 LMELGSRESSAYVLLSSIYTAMGRLADVVRVRRMMKVRGVRKETGCSWIELKSH 663
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 167/343 (48%), Gaps = 38/343 (11%)
Query: 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
G+ LHAH+ K L S Y+ N+LI FY + A+++F+ + ++V S+N L+
Sbjct: 26 GQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLS 85
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHY-GKTVHCYATKVGLEY 117
+N S VL LF+++I I+ D T +F+A A ++ + VH K
Sbjct: 86 HNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASID 145
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + ++L+ Y K + EA +LFD M RN+VS +I+GY ++
Sbjct: 146 DVFVGSSLVNFYCKVGCVFEARKLFDRM-PERNLVSWTTMISGYASKQMA---------- 194
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+EAL +F M + EG +E V SVLSA + G
Sbjct: 195 ---------------------KEALGVFGLMRLVEG-NLNEFVFTSVLSALVCPEFVDSG 232
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+ VH +++N + + V AL+ MY+KCG+L +L+ F K+ +TW+ +I G +
Sbjct: 233 KQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQA 292
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339
G ++AL++F +M G P+E T V VL AC I EG Q
Sbjct: 293 GDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQ 335
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 7/223 (3%)
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING----YIDMELVDLAREVFDEIVDK 180
LL+ YA K + + L + + S N L N Y + A+ VF+ + K
Sbjct: 13 LLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHK 72
Query: 181 DIVLWRSMMHGCVK--AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY-GR 237
++V + ++HG +K LELF++MI + PD V +A + + R
Sbjct: 73 NVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALNLGCNFDAR 132
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH ++ D FV ++L++ Y K G + EA F + +++V+WTTMI G A+
Sbjct: 133 QVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQ 192
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
+ EAL VF M NE F SVL+A + G Q+
Sbjct: 193 MAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQV 235
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/464 (32%), Positives = 252/464 (54%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + + +S + V +L+ Y + AR++FD+M + V SWN+++ Y
Sbjct: 294 IGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYV 353
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D G + +F++++ E + +T++ ACA L + G+ VH ++ L ++
Sbjct: 354 QNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVS 413
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ MY+KCK VD+A E+F+ + K
Sbjct: 414 VMNSLISMYSKCKR--------------------------------VDIAAEIFENLQHK 441
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V W +M+ G + + EA++ F KM + + PD MVSV+ A + LS L + +H
Sbjct: 442 TLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIH 501
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + ++ FV TAL+DMY+KCG++ A F D + V TW MI+G +GLG
Sbjct: 502 GLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGK 561
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F +M+++ IKPNE TF+ VL+AC HSGL+ EG Q F M Y ++P ++H+ +
Sbjct: 562 AALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAM 621
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RA L +A +FI+ MP E + A+L AC + +LG+K AN + L
Sbjct: 622 VDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDG 681
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+VLL+N YA W +VA R M++ +K PG S+++L++
Sbjct: 682 GYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQN 725
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 198/409 (48%), Gaps = 45/409 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
GK +H + S+++ +++ Y + L +A +FD+MP RD+ WNT++S Y
Sbjct: 194 GKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQ 253
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N F + L+L Q EG D IT+V + A A + L G+++H Y+ + G E +
Sbjct: 254 NGFGKTALELVLRMQE--EGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFV 311
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N+ AL+ MY+KC + A +FD M + + +VS N +I+GY
Sbjct: 312 NVSTALVDMYSKCGSVGTARLIFDRM-TGKTVVSWNSMIDGY------------------ 352
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
V+ P A+E+F+KM+DE V ++ L AC+ L +++ GR V
Sbjct: 353 -------------VQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFV 399
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H+ + Q + D V +LI MYSKC ++ A F K +V+W MI G A G
Sbjct: 400 HKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRI 459
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV- 358
NEA+ F +M+ + IKP+ T VSV+ A ++ + + G V R FV
Sbjct: 460 NEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIH---GLVIRTCLDKNVFVA 516
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406
LVD+ ++ G ++ A + +M E ++ A++ Y LGK
Sbjct: 517 TALVDMYAKCGAVHTARKLFDMM-DERHVTTWNAMIDG---YGTHGLGK 561
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 145/329 (44%), Gaps = 32/329 (9%)
Query: 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEV 68
+ K L S+ L+ + + +A +F + + ++T++ Y S +
Sbjct: 100 IIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDA 159
Query: 69 LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
+ F ++ ++G+ L C L GK +HC G + ++ M
Sbjct: 160 VSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNM 219
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
YAKC+ ++EA ++FD M R D+V W ++
Sbjct: 220 YAKCRLVEEAYKMFDRMPER--------------------------------DLVCWNTI 247
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ G + + ALEL +M +EG PD +VS+L A + + +L+ GR +H + ++
Sbjct: 248 ISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGF 307
Query: 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
V TAL+DMYSKCGS+ A + F + K VV+W +MI+G G A+ +F +
Sbjct: 308 ESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQK 367
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEG 337
M + ++ T + L AC G + +G
Sbjct: 368 MMDEQVEMTNVTVMGALHACADLGDVEQG 396
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 119/248 (47%), Gaps = 10/248 (4%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A VF I DK L+ +M+ G + ++A+ F +M +GV P +L C
Sbjct: 128 AARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGD 187
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
++L+ G+ +H ++ N + F T +++MY+KC +EEA F + +D+V W T+
Sbjct: 188 NADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTI 247
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I G A G G AL + +M+ +G +P+ T VS+L A G + G R + G Y
Sbjct: 248 ISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIG----RSIHG-YS 302
Query: 350 VQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
++ E FV LVD+ S+ G + A M + +S+ +++ + +
Sbjct: 303 MRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGK-TVVSWNSMIDGYVQNGDPGAA 361
Query: 406 KKVANNMM 413
++ MM
Sbjct: 362 MEIFQKMM 369
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 166/463 (35%), Positives = 240/463 (51%), Gaps = 33/463 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH K ++ N+L+ Y + DA F+KM + V SW +L++ Y
Sbjct: 672 LGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYV 731
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + LF ++ +G+ D ++ + ACA L G+ VH Y K + L
Sbjct: 732 REGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLP 791
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC M+EA Y+ VF +I K
Sbjct: 792 VSNALMDMYAKCGSMEEA----------------------YL----------VFSQIPVK 819
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIV W +M+ G K P EAL+LF +M E PD M +L AC SL+ L+ GR +H
Sbjct: 820 DIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIH 878
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
IL+N + + V ALIDMY KCGSL A + F KD++TWT MI G +GLGN
Sbjct: 879 GCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGN 938
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EA+ F +M GIKP+E TF S+L AC HSGL+ EG F M ++P +EH+ C+
Sbjct: 939 EAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACM 998
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL+R G L +A I+ MP + + ALL C + + +L +KVA ++ +L +
Sbjct: 999 VDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNA 1058
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVLL+N YA W EV + R + + +K PG S I+++
Sbjct: 1059 GYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQ 1101
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 185/397 (46%), Gaps = 39/397 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDK-MPFRDVGSWNTLMSIYN 60
GK +H+ ++ + + +G L+ Y + R +FD + V WN +MS Y
Sbjct: 470 GKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYA 529
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D E + LFK++ GI + T + A L ++ K +H K+G
Sbjct: 530 KIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGF----- 584
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
GS +V N LI Y VD A ++FDE+ D+
Sbjct: 585 -------------------------GSYNTVV--NSLIATYFKSGEVDSAHKLFDELGDR 617
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W SM+ GCV ALE F +M+ V D +V+ ++AC+++ +L GR +H
Sbjct: 618 DVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALH 677
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ +++ L+DMYSKCG+L +A+ F K K VV+WT++I GL +
Sbjct: 678 GQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYD 737
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL--FRRMGGVYRVQPTIEHFV 358
+A+R+FY+ME KG+ P+ + SVL AC + +G + + R + P
Sbjct: 738 DAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSN--- 794
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
L+D+ ++ G + +A +P +D +S+ ++
Sbjct: 795 ALMDMYAKCGSMEEAYLVFSQIPVKD-IVSWNTMIGG 830
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 9/180 (5%)
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK--TD 279
S+L C+ LQ G++VH I N I + + L+ MY CG+L E F +D
Sbjct: 456 SILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSD 515
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339
K V W M+ A G E++ +F +M++ GI N TF +L G + E C+
Sbjct: 516 NK-VFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGE-CK 573
Query: 340 LFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
R G VY++ + V L+ ++G + A + + D +S+ +++S C+
Sbjct: 574 --RIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRD-VVSWNSMISGCV 630
>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 158/470 (33%), Positives = 249/470 (52%), Gaps = 40/470 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H V K LD D+YVG+SL+ Y + L +AR LFD++P RDV WN++++ Y
Sbjct: 80 KKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDEIPDRDVVLWNSMVNGYAQI 139
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
E L + +++ EG++ K T+ + S A G+ VH + K+G + +++
Sbjct: 140 GRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRLVHGFMIKMGFDSCVSVC 199
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
NAL+ MY KC+ + +AL E+F+ + +KDI
Sbjct: 200 NALIDMYGKCRCVVDAL--------------------------------EIFETMNEKDI 227
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W S++ + L LF +M+ +GV D + ++L ACS L+ L +GR +H +
Sbjct: 228 FSWNSILSANELCSDHDGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGY 287
Query: 243 ILQNNITQDAFVK--------TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
++ N +D + AL+DMY+KCGS+ +A + FY +D +W MI G
Sbjct: 288 MIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYG 347
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
+G GNEAL +F M + G+KPNE TFV VL AC H+G I++G + M + V PTI
Sbjct: 348 MHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVPTI 407
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+H+ C++D+L RAG L +A + MP + + ++ALL+AC Y DL + A + +
Sbjct: 408 QHYTCVIDMLGRAGQLEEAYKLAVTMPIQTNPVVWRALLAACQLYGNVDLAEVAAQKVFE 467
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
L YVL+SN Y G + EV + R M++ +K PG S I+LK+
Sbjct: 468 LNPAHCGNYVLMSNAYVAAGRYQEVLDIRHTMRQQDVKKTPGCSWIELKN 517
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 138/306 (45%), Gaps = 42/306 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + K DS + V N+LI YG+ DA +F+ M +D+ SWN+++S
Sbjct: 180 GRLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANEL 239
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL------ 115
SD L LF +++ +G+ D +T+ + AC+ L L +G+ +H Y G
Sbjct: 240 CSDHDGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGYMIVNGFVKDGES 299
Query: 116 EYMLNME--NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
E M N++ NAL+ MYAKC M +A +F M S R+ S NI+I GY
Sbjct: 300 ENMYNLQTINALMDMYAKCGSMRDAGMVFYNM-SNRDTASWNIMIMGY------------ 346
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
MHG EAL +F M G+ P+E V VL ACS +
Sbjct: 347 --------------GMHG-----YGNEALYMFSDMCKSGLKPNEITFVGVLLACSHAGFI 387
Query: 234 QYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIE 291
G + + L++ + T +IDM + G LEEA + + V W ++
Sbjct: 388 SQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEAYKLAVTMPIQTNPVVWRALLA 447
Query: 292 GLANYG 297
YG
Sbjct: 448 ACQLYG 453
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 130/296 (43%), Gaps = 42/296 (14%)
Query: 128 MYAKCKEMDEALRLFDEMGS-RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
MYAKC +M++AL + + RN+ + N LI+G++ L
Sbjct: 1 MYAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGL-------------------- 40
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
P++ L +++M GV PD+ ++ + + + +H + +
Sbjct: 41 -----------PQDGLGAYEEMRQAGVLPDKYTFPCLIKGLCEVMEVFQVKKIHGLVRKL 89
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ D +V ++L+ Y K ++EA F + +DVV W +M+ G A G +EAL V
Sbjct: 90 GLDLDMYVGSSLVSSYLKSELMKEARELFDEIPDRDVVLWNSMVNGYAQIGRFDEALGVC 149
Query: 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVD 362
+M ++G+ ++ T VL+ G G R+ + ++ + V L+D
Sbjct: 150 REMSQEGVLMSKFTVSGVLSVFAGRGDFDNG-----RLVHGFMIKMGFDSCVSVCNALID 204
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
+ + + A E + M +D F S+ ++LSA S+ D ++ + M+ G Q
Sbjct: 205 MYGKCRCVVDALEIFETMNEKDIF-SWNSILSANELCSDHDGTLRLFDRMLGDGVQ 259
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 164/498 (32%), Positives = 258/498 (51%), Gaps = 69/498 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARV---------------------- 39
G+ +H HV K D DIYV SLI Y + DAR
Sbjct: 108 GQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVS 167
Query: 40 ---------LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIF-EGIVADKITLVI 89
LFD++P +DV SWN ++S Y + + E L LFK+++ + D+ T+V
Sbjct: 168 RGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVT 227
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA+ + + G+ VH + G L + NAL+ +Y+K E
Sbjct: 228 VVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGE--------------- 272
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
V+ A E+FD + +KD++ W +++ G +EAL LF++M+
Sbjct: 273 -----------------VETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEML 315
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI---LQNNITQDAFVKTALIDMYSKCG 266
G TP++ M+S+L AC+ L + GR +H +I L+ +T + ++T+LIDMY+KCG
Sbjct: 316 RSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCG 375
Query: 267 SLEEALVTFYKT-DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
++ A F + + + TW MI G A +G N A +F +M GI+P++ TFV +L
Sbjct: 376 DIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLL 435
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+AC HSG++ G +FR M Y + P +EH+ C++DLL +GL +AEE I MP E
Sbjct: 436 SACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPD 495
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
+ + +LL AC + +LG+ A ++K+ + +YVLLSN YA G W EVA+ R
Sbjct: 496 GVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRAL 555
Query: 446 MKELQTRKK-PGNSIIDL 462
+ + +KK PG S I++
Sbjct: 556 LNDKGMKKKVPGCSSIEI 573
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 217/405 (53%), Gaps = 19/405 (4%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLI-------HFYGRMALFTDARVLFDKMPFRDVGSWNTL 55
+ +HA + KT L + Y + L+ HF G F A +FD + ++ WNT+
Sbjct: 5 RXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDG----FPYAISVFDTIQEPNLLIWNTM 60
Query: 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
+ SD L L+ +I G++ D T L +CA+ + G+ +H + K+G
Sbjct: 61 FRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGF 120
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ + + +L+ MYA+ +++A ++FD + S R++VS LI GY+ ++ A+++FD
Sbjct: 121 DLDIYVHTSLISMYAQNGRLEDARKVFD-ISSHRDVVSYTALIAGYVSRGYIESAQKLFD 179
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKK-MIDEGVTPDEEVMVSVLSACSSLSNLQ 234
EI KD+V W +M+ G V+ +EALELFK+ M+ V PDE MV+V+SAC+ +++
Sbjct: 180 EIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIE 239
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
GR VH +I + + + ALID+YSK G +E A F KDV++W T+I G
Sbjct: 240 LGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYT 299
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG----CQLFRRMGGVYRV 350
+ L EAL +F +M R G PN+ T +S+L AC H G I G + +++ GV
Sbjct: 300 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTN 359
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+++ L+D+ ++ G + A++ + ++ A++S
Sbjct: 360 VSSLQ--TSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISG 402
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 142/303 (46%), Gaps = 38/303 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ + S++ + N+LI Y + A LFD + +DV SWNTL+ Y
Sbjct: 240 LGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYT 299
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L+LF++++ G + +T++ + ACA L + G+ +H Y K + N
Sbjct: 300 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTN 359
Query: 121 ---MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
++ +L+ MYAKC ++D A ++FD S R++ + N +I+G+
Sbjct: 360 VSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGF---------------- 403
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
MHG A A ++F +M G+ PD+ V +LSACS L GR
Sbjct: 404 ----------AMHGRANA-----AFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGR 448
Query: 238 LVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLA 294
+ R + + IT +ID+ G +EA ++ + D V W ++++
Sbjct: 449 NIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPME-PDGVIWCSLLKACK 507
Query: 295 NYG 297
+G
Sbjct: 508 IHG 510
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 170/459 (37%), Positives = 236/459 (51%), Gaps = 36/459 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ H+ KT L DIYV N+L+H Y A +F+ M RDV SW L+S Y
Sbjct: 129 RQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKT 188
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
E + LF ++ E V T V + AC +L +L+ GK +H K L +
Sbjct: 189 GLFNEAISLFLRMNVEPNVG---TFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELVVC 245
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
NA+L MY KC + +A R++FDE+ +KDI
Sbjct: 246 NAVLDMYMKCDSVTDA--------------------------------RKMFDEMPEKDI 273
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
+ W SM+ G V+ + P E+L+LF +M G PD ++ SVLSAC+SL L GR VH +
Sbjct: 274 ISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEY 333
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
I + I D + T L+DMY+KCG ++ A F K++ TW I GLA G G EA
Sbjct: 334 IDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEA 393
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM-GGVYRVQPTIEHFVCLV 361
L+ F + G +PNE TF++V AC H+GL+ EG + F M +Y + P +EH+ C+V
Sbjct: 394 LKQFEDLVESGTRPNEVTFLAVFTACCHNGLVDEGRKYFNEMTSPLYNLSPCLEHYGCMV 453
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAGL+ +A E IK MP ALLS+ TY +++ ++ + Q
Sbjct: 454 DLLCRAGLVGEAVELIKTMPMPPDVQILGALLSSRNTYGNVGFTQEMLKSLPNVEFQDSG 513
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
YVLLSN YA W EV RR MK+ K PG+SII
Sbjct: 514 IYVLLSNLYATNKKWAEVRSVRRLMKQKGISKAPGSSII 552
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 109/237 (45%), Gaps = 32/237 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GKG+H V K ++ V N+++ Y + TDAR +FD+MP +D+ SW +++
Sbjct: 225 LGKGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLV 284
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF Q+ G D + L + SACA L L G+ VH Y +++ ++
Sbjct: 285 QCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVH 344
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ L+ MYAKC +D A R+F+ M S K
Sbjct: 345 IGTTLVDMYAKCGCIDMAQRIFNGMPS--------------------------------K 372
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+I W + + G +EAL+ F+ +++ G P+E ++V +AC + GR
Sbjct: 373 NIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACCHNGLVDEGR 429
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 9/212 (4%)
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247
++ G + P A+ +++ + G PD +VL +C+ S + R H ++
Sbjct: 80 LISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGEVRQFHSVSVKTG 139
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
+ D +V+ L+ +YS CG A F +DVV+WT +I G GL NEA+ +F
Sbjct: 140 LWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISLFL 199
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC--LVDLLS 365
+M ++PN TFVS+L AC G + G + G V++ E VC ++D+
Sbjct: 200 RMN---VEPNVGTFVSILGACGKLGRLNLGKGIH---GLVFKCLYGEELVVCNAVLDMYM 253
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
+ + A + MP +D IS+ +++ +
Sbjct: 254 KCDSVTDARKMFDEMPEKD-IISWTSMIGGLV 284
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 156/461 (33%), Positives = 247/461 (53%), Gaps = 32/461 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA + K+ S+ +V N+LI Y AR +FD MP R + +WN+++S Y
Sbjct: 140 GEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTK 199
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
EV+ LF++++ I D +T++ + AC RL L G+ + Y GL +
Sbjct: 200 NGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTL 259
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MYAKC + VD AR++FDE+ +D
Sbjct: 260 TTSLIDMYAKCGQ--------------------------------VDTARKLFDEMDKRD 287
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ G +A + +EAL LF +M V P+E MVSVL +C+ L + G+ VH
Sbjct: 288 VVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHF 347
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I + + + T LID Y+KCG ++ ++ F + K+V TWT +I+GLAN G G
Sbjct: 348 YIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKM 407
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL F M +KPN+ TF+ VL+AC H+ L+ +G LF M + ++P IEH+ C+V
Sbjct: 408 ALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMV 467
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L RAG L +A +FI MP + ++ LL++C + ++ +K ++ +L
Sbjct: 468 DILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSG 527
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+LLSN YAL G + R +KE + +K PG S+I+L
Sbjct: 528 DYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIEL 568
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/414 (26%), Positives = 201/414 (48%), Gaps = 40/414 (9%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD----ARVLFDKMPFRDVGSWNTLMSIYN 60
+HAH+ KT D + +++ L D A +F+ + + ++N ++
Sbjct: 40 VHAHLLKTRRLLDPIITEAVLE--SAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLA 97
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
L+LFK++ + + DK T + AC+R++ L G+ VH K G +
Sbjct: 98 FKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEF 157
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+EN L+ MYA C + + +AR VFD + ++
Sbjct: 158 VENTLIQMYANCGQ--------------------------------IGVARHVFDGMPER 185
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
IV W SM+ G K +E ++LF+K+++ + D+ M+SVL AC L+NL+ G L+
Sbjct: 186 SIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIG 245
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I+ + ++ + T+LIDMY+KCG ++ A F + D +DVV W+ MI G A
Sbjct: 246 EYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCK 305
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F++M++ + PNE T VSVL +C G G + + +++ T+ L
Sbjct: 306 EALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKK-KKMKLTVTLGTQL 364
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+D ++ G + ++ E K M ++ F ++ AL+ E + + ++M++
Sbjct: 365 IDFYAKCGYIDRSVEVFKEMSFKNVF-TWTALIQGLANNGEGKMALEFFSSMLE 417
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 22/296 (7%)
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
+ +D A +F+ I + + M+ G + P+ AL LFKKM ++ V D+ SVL
Sbjct: 69 DTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVL 128
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
ACS + L+ G VH IL++ + FV+ LI MY+ CG + A F + +V
Sbjct: 129 KACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIV 188
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
W +M+ G GL +E +++F ++ I+ ++ T +SVL AC + G +
Sbjct: 189 AWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIG-----EL 243
Query: 345 GGVYRVQPTIEH----FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYS 400
G Y V + L+D+ ++ G + A + M D +++ A++S Y+
Sbjct: 244 IGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRD-VVAWSAMISG---YA 299
Query: 401 EFDLGKKVAN--NMMKLGNQSHEAYVLLSNFYAL-------EGHWTEVAEARRNMK 447
+ D K+ N + M+ GN ++S Y+ G W ++ MK
Sbjct: 300 QADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMK 355
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 43/277 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + ++ L + + SLI Y + AR LFD+M RDV +W+ ++S Y
Sbjct: 240 IGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYA 299
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF ++ + +++T+V + +CA L GK VH Y K ++ +
Sbjct: 300 QADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVT 359
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ L+ YAKC GYID + EVF E+ K
Sbjct: 360 LGTQLIDFYAKC---------------------------GYIDRSV-----EVFKEMSFK 387
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ W +++ G + + ALE F M++ V P++ + VLSACS + GR H
Sbjct: 388 NVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGR--H 445
Query: 241 RFILQNNITQDAFVKT------ALIDMYSKCGSLEEA 271
F N++ +D ++ ++D+ + G LEEA
Sbjct: 446 LF---NSMRRDFDIEPRIEHYGCMVDILGRAGFLEEA 479
>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 794
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 156/451 (34%), Positives = 248/451 (54%), Gaps = 3/451 (0%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILF- 72
+ + GN+L+H Y L DAR LFD+M RDV SW TL+ Y E +F
Sbjct: 162 IGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFC 221
Query: 73 KQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKC 132
+ ++ E + +++TLV SA ++ L G+TVH + G +N+ENAL+ M+ KC
Sbjct: 222 RMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKC 281
Query: 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC 192
+ A +FD M +++ S +++ Y ++ A ++F EI ++++V W M+
Sbjct: 282 GCVAAAKEVFDGM-PIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAY 340
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQD 251
A P+EA+ +F MI GV P + +VSVLSAC+ L +L G L +I+ + +
Sbjct: 341 SHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELT 400
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
+ A IDM++KCG + A F + K+VV+W TMI +G EAL +F + +
Sbjct: 401 PNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKG 460
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY 371
GI P+EAT++ VL+AC H GL++EG F+ M VY ++P EH+ C++DLL + GLL
Sbjct: 461 NGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQ 520
Query: 372 QAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431
+A E + MP + ALL+AC + ++GK A+ + L YVL+S YA
Sbjct: 521 EAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYA 580
Query: 432 LEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ W +V R M++ + +K PG S I++
Sbjct: 581 SKSKWGQVKMLRTVMRDRRVKKNPGCSSIEV 611
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 128/305 (41%), Gaps = 65/305 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + ++ + + N+L+ +G+ A+ +FD MP +DV SW +++S Y
Sbjct: 251 LGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYA 310
Query: 61 DFSD-------------------------------SGEVLILFKQLIFEGIVADKITLVI 89
D E + +F +I G+ TLV
Sbjct: 311 KCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVS 370
Query: 90 LFSACARLEKLHYGKTVH-CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ SACA+L L G ++ Y +E N+ NA + M+AKC ++ A RLF M
Sbjct: 371 VLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNM-ED 429
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+N+VS N +I M HG QPEEAL LF++
Sbjct: 430 KNVVSWNTMI-----------------------------MAHGL--HGQPEEALHLFQEF 458
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI-LQNNITQDAFVKTALIDMYSKCGS 267
G+ PDE + VLSACS + GR + + + I A +ID+ K G
Sbjct: 459 KGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGL 518
Query: 268 LEEAL 272
L+EA
Sbjct: 519 LQEAF 523
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 111/214 (51%), Gaps = 12/214 (5%)
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
+MM G ++A +P AL LF++++ + + D +V + A ++ S+ +H +
Sbjct: 102 TMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPT--EAIHCVAFKR 159
Query: 247 N-ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
I Q AL+ MY+ L +A F + +DVV+WTT+I+G A GL +EA RV
Sbjct: 160 GFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRV 219
Query: 306 FYQM-ERKGIKPNEATFVSVLAACRHSGLITEG---CQLFRRMGGVYRVQPTIEHFVCLV 361
F +M + + PNE T V+ +A GL+ G Q GG R+ +E+ LV
Sbjct: 220 FCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGG--RMSVNLEN--ALV 275
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
D+ + G + A+E MP +D + S+ +++SA
Sbjct: 276 DMFGKCGCVAAAKEVFDGMPIKDVY-SWTSMVSA 308
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 174/497 (35%), Positives = 261/497 (52%), Gaps = 42/497 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL---FTDARVLFDKMPFRDVGSWNTLMSIY 59
K +HA + +S+ LI F G M + A +F ++ D+ WNT+M
Sbjct: 30 KQIHATLIIKGFNSNRAALRELI-FAGAMTISGAINYAHQVFAQITEPDIFMWNTMMRGS 88
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ + +V++L+ Q+ G+ DK T L C RLE G VH K G E
Sbjct: 89 SQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNS 148
Query: 120 NMENALLLMYAKCK-------------------------------EMDEALRLFDEMGSR 148
+ N L+ ++ C E+ A ++FDEM
Sbjct: 149 FVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFDEM-PV 207
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+++VS N++I GY+ ++ AR +FDE +KD+V W +M+ G V + +ALE+F++M
Sbjct: 208 KDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEM 267
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ---DAFVKTALIDMYSKC 265
+ G PDE M+S+LSAC+ L +LQ GR +H I + +T+ + AL+DMY+KC
Sbjct: 268 RNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSI--SEMTRGDLSVLLGNALVDMYAKC 325
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER-KGIKPNEATFVSV 324
GS+E AL F K KDV TW ++I GLA +G E++++F +M+ K IKPNE TFV V
Sbjct: 326 GSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVGV 385
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
+ AC H+G + EG + F+ M Y ++P + H C+VDLL RAGLL +A E I M E
Sbjct: 386 IVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFELIAKMEIEP 445
Query: 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444
I ++ LL AC + +LG+ ++KL YVLLSN YA G W E R+
Sbjct: 446 NAIIWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLLSNIYASAGEWDGAEEVRK 505
Query: 445 NMKELQTRKKPGNSIID 461
M + RK+ G S+I+
Sbjct: 506 LMDDGGVRKEAGRSLIE 522
>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
Length = 645
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 161/462 (34%), Positives = 233/462 (50%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHA K ++ +V SL+ Y R L A+ +FD+MP SW L++ Y D
Sbjct: 90 GEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMD 149
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D E + + + G+ D T V + +ACAR+ L G+TV A + G+ + +
Sbjct: 150 AGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFV 209
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
A + +Y KC EM +A REVFD++ DKD
Sbjct: 210 ATAAVDLYVKCGEMAKA--------------------------------REVFDKMRDKD 237
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G P EAL+LF M EGV PD + LSAC+ L L GR R
Sbjct: 238 AVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIR 297
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + + TALIDMY+KCGS EA V F + KD++ W MI GL G
Sbjct: 298 MVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKT 357
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A + QME+ G+K N+ TF+ +L +C H+GLI +G + F M +Y + P IEH+ C+V
Sbjct: 358 AFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIV 417
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLLSRAGLL +A + I MP + ALL C + +L + V +++L +
Sbjct: 418 DLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSG 477
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YV+LSN Y+ G W + A+ R +MKE K P S ++ +
Sbjct: 478 NYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFE 519
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 2/175 (1%)
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC 280
+++ SA L+ G +H L+ + V T+L+ +Y++CG L A F +
Sbjct: 75 IALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPH 134
Query: 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
V+WT +I + G EA+ V G++P+ T V VL AC + G +
Sbjct: 135 PSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETV 194
Query: 341 FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ R + ++ VDL + G + +A E M +D +++ A++
Sbjct: 195 W-RAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDA-VAWGAMVGG 247
>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 154/449 (34%), Positives = 260/449 (57%), Gaps = 2/449 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ +++ Y +AR +FD+MP R+ SW+ +++ Y+ + E L LF +++
Sbjct: 249 DVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMV 308
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
EG + SA A L L G +H + TK+G++ + + ++L+ +Y KC + D
Sbjct: 309 QEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPD 368
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+ +FD + +N+V N ++ GY ++ E+F+ I +K+ V W +++ G ++ +
Sbjct: 369 DGRLVFDLI-LEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENE 427
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
Q E+ LE+F ++ G TP++ SVL AC+S+++L G VH I++ I D FV T
Sbjct: 428 QCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGT 487
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IK 315
AL DMY+KCG + + F + K+ ++WT MI+GLA G E+L +F +MER +
Sbjct: 488 ALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVA 547
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
PNE +SVL AC H GL+ +G F M VY ++P +H+ C+VDLLSR+G LY+AEE
Sbjct: 548 PNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEE 607
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
FI+ +P + + ++ ALLS C Y + + ++ A + +L + YVLLSN YA G
Sbjct: 608 FIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGR 667
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDLKH 464
W +V+ R+ M+E +K G S +++++
Sbjct: 668 WIDVSNIRKLMREKGLKKSGGCSWVEVRN 696
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 128/482 (26%), Positives = 222/482 (46%), Gaps = 79/482 (16%)
Query: 8 HVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-------- 59
+ K SD+ V N +I Y + AR+LFD+MP R+ SW+ L+S
Sbjct: 77 QIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEE 136
Query: 60 -------NDFSD--------SG--------EVLILFKQLIFEGIVADKITLVILFSACAR 96
N F + SG E L LF +L+ G+ + +T + AC
Sbjct: 137 SMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGE 196
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
L G ++ K G E+ L++ N+L+ + + E+D A R+FD M +R++VS
Sbjct: 197 LGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRM-EKRDVVSWTA 255
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
+++ Y++ + AR +FDE+ +++ + W +M+ ++ EEAL+LF KM+ EG P+
Sbjct: 256 ILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPN 315
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
LSA +SL L G +H + + I +D F+ ++LID+Y KCG ++ + F
Sbjct: 316 ISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFD 375
Query: 277 KTDCKDVVTWTTMIEGLANYG---------------------------LGNE----ALRV 305
K+VV W +M+ G + G L NE L V
Sbjct: 376 LILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEV 435
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDL 363
F + G PN++TF SVL AC + +G + G + ++ + FV L D+
Sbjct: 436 FNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVH---GKIIKLGIQYDIFVGTALTDM 492
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLS----------ACITYSEFDLGKKVANNMM 413
++ G + +++ + MP +++ IS+ ++ + I + E + +VA N +
Sbjct: 493 YAKCGDIGSSKQVFERMPEKNE-ISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNEL 551
Query: 414 KL 415
L
Sbjct: 552 ML 553
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 153/323 (47%), Gaps = 27/323 (8%)
Query: 53 NTLMSIYNDFSDSGEVL---ILFKQLIFEGIVADK---ITLVILFSACARLEKLHYGKTV 106
T +S+ FS+ G + +L LI G + + I L+IL+ C + ++ + V
Sbjct: 22 QTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEID--QIV 79
Query: 107 HCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMEL 166
+ L + N ++ Y + + +A LFDEM RN VS + LI+G +
Sbjct: 80 KEFDGS-----DLVVSNCMISAYVQWGNLVQARLLFDEM-PERNEVSWSALISGLMKYGR 133
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
V+ + F+ +++V W + + G V+ EAL+LF ++++ GV P++ SV+ A
Sbjct: 134 VEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRA 193
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C L + G + +++ V +LI + + G ++ A F + + +DVV+W
Sbjct: 194 CGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSW 253
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
T +++ G EA R+F +M + NE ++ +++A SG E +LF +M
Sbjct: 254 TAILDAYVETGDLREARRIFDEMPER----NEISWSAMIARYSQSGYAEEALKLFSKM-- 307
Query: 347 VYRVQ----PTIEHFVCLVDLLS 365
VQ P I F C + L+
Sbjct: 308 ---VQEGFKPNISCFACTLSALA 327
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 137/330 (41%), Gaps = 68/330 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD------------------- 42
G +H HVTK +D D+++G+SLI Y + D R++FD
Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394
Query: 43 ------------KMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+P ++ SW T+++ Y + +VL +F L+ G +K T +
Sbjct: 395 NGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSV 454
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
ACA + L G VH K+G++Y + + AL MYAKC ++ + ++F+ M
Sbjct: 455 LCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERM----- 509
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+K+ + W M+ G ++ E+L LF++M
Sbjct: 510 ---------------------------PEKNEISWTVMIQGLAESGFAVESLILFEEMER 542
Query: 211 EG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NNITQDAFVKTALIDMYSKCGSL 268
V P+E +++SVL ACS + G + + I T ++D+ S+ G L
Sbjct: 543 TSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRL 602
Query: 269 EEALVTFYKTDC--KDVVTWTTMIEGLANY 296
EA F +T + W ++ G Y
Sbjct: 603 YEA-EEFIRTIPFQPEANAWAALLSGCKKY 631
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 157/460 (34%), Positives = 250/460 (54%), Gaps = 41/460 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + + D+YVG+SLI FYG+ AR +FD++P R+V SW +++ Y
Sbjct: 124 GEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYAS 183
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D +F+++ E L
Sbjct: 184 VGDLENAKRVFERMP---------------------------------------ERNLPS 204
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NA++ K ++ A ++FDEM RN+VS ++I+GY + + AR +FDE +KD
Sbjct: 205 WNAMISGLGKAGDLSGARKVFDEM-VERNVVSFTVMIDGYAKVGDMASARALFDEAPEKD 263
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G + +QP EA+++F +M+ V PDE +MVS++SACS L N + V
Sbjct: 264 VVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDS 323
Query: 242 FILQNNI-TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ Q +I T+ A V ALIDM++KCG++E+A+ F +D++ ++I+GL+ +G G
Sbjct: 324 YLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHGRGV 383
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EA+ +F +M +G+ P+ F +L AC GLI +G F M Y V P+ H+ C+
Sbjct: 384 EAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHYACM 443
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLLSRAG L A + +K MP + ++ ALL AC + + +L ++VAN +++L +
Sbjct: 444 VDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKLHGDVELREEVANRLLELEPEKA 503
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
+YVLLSN YA W +V+ R MKE RK PG S I
Sbjct: 504 GSYVLLSNIYASANQWLDVSIVRDEMKERGIRKIPGCSYI 543
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 108/230 (46%), Gaps = 11/230 (4%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLS 225
V + +F+ +++ L+ ++ K Q + LF +M E D+ ++
Sbjct: 54 VSYSTSIFNRLLNPSTFLYNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIK 113
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
CS+ L+ G +VH ++ ++ D +V ++LI Y KC + A F + ++VV+
Sbjct: 114 VCSNELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVS 173
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
WT M+ G A+ G A RVF +M + N ++ ++++ +G ++ ++F M
Sbjct: 174 WTAMVAGYASVGDLENAKRVFERMPER----NLPSWNAMISGLGKAGDLSGARKVFDEM- 228
Query: 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
V+ + F ++D ++ G + A P +D +++ AL+S
Sbjct: 229 ----VERNVVSFTVMIDGYAKVGDMASARALFDEAPEKD-VVAWSALISG 273
>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
Length = 540
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 161/457 (35%), Positives = 242/457 (52%), Gaps = 29/457 (6%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
H + + D +VG +L+ Y DAR +FD MP RD+ +W ++ Y +
Sbjct: 92 HGLAFRVGAEVDGFVGTALVRAYAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQARNY 151
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
E L+LF + +V D++ + + S CA L +GK +H Y + AL
Sbjct: 152 EEALLLFHSMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDALIDAQVSCAL 211
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+ MYA C +M+ A +L++ + S ++IV ++ GY V++A +F+ + +KD+V W
Sbjct: 212 MNMYASCADMEMAEKLYNRV-SEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPEKDVVSW 270
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+M+ G ++ +P EAL LF M GV PDE M+S+L
Sbjct: 271 SAMIAGYAESSKPMEALNLFHDMQRSGVQPDEITMLSILP-------------------- 310
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
+ ALIDM+SKCGSL AL F K+VVTWT++I A +G G AL +
Sbjct: 311 --------IGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTL 362
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F M+ +GI+PN TF+ +L AC H+GL+ EG LF+ M YR++P EH+ C+VDLL
Sbjct: 363 FENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLG 422
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
RA LL QA + I+ M + + +LL+AC + + +LG A +++L A VL
Sbjct: 423 RAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLELGAFAAKKILELDPNHGGAQVL 482
Query: 426 LSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
LSN YA G+W +V E R MK T KK G S ++L
Sbjct: 483 LSNIYAEYGNWNDVKEVRGVMKVQGTWKKKGCSWMEL 519
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 105/276 (38%), Gaps = 91/276 (32%)
Query: 2 GKGLHAH--VTKTALDS-----------------------------DIYVGNSLIHFYGR 30
GK +H++ V+ +D+ DI + ++++ Y +
Sbjct: 189 GKAIHSYMLVSDALIDAQVSCALMNMYASCADMEMAEKLYNRVSEKDIVLSTTMVYGYAK 248
Query: 31 MALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
A +F+ MP +DV SW+ +++ Y + S E L LF + G+ D+IT++
Sbjct: 249 NGKVEIAHSIFNGMPEKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVQPDEITML-- 306
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
+L + NAL+ M++KC + AL
Sbjct: 307 --------------------------SILPIGNALIDMFSKCGSLTLAL----------- 329
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+VF+ + K++V W S++ AL LF+ M
Sbjct: 330 ---------------------DVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKS 368
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
EG+ P+ + +L AC ++ GRL+ + ++Q
Sbjct: 369 EGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQ 404
>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 161/462 (34%), Positives = 233/462 (50%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHA K ++ +V SL+ Y R L A+ +FD+MP SW L++ Y D
Sbjct: 137 GEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMD 196
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D E + + + G+ D T V + +ACAR+ L G+TV A + G+ + +
Sbjct: 197 AGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFV 256
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
A + +Y KC EM +A REVFD++ DKD
Sbjct: 257 ATAAVDLYVKCGEMAKA--------------------------------REVFDKMRDKD 284
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G P EAL+LF M EGV PD + LSAC+ L L GR R
Sbjct: 285 AVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIR 344
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + + TALIDMY+KCGS EA V F + KD++ W MI GL G
Sbjct: 345 MVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKT 404
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A + QME+ G+K N+ TF+ +L +C H+GLI +G + F M +Y + P IEH+ C+V
Sbjct: 405 AFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIV 464
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLLSRAGLL +A + I MP + ALL C + +L + V +++L +
Sbjct: 465 DLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSG 524
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YV+LSN Y+ G W + A+ R +MKE K P S ++ +
Sbjct: 525 NYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFE 566
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 2/175 (1%)
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC 280
+++ SA L+ G +H L+ + V T+L+ +Y++CG L A F +
Sbjct: 122 IALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPH 181
Query: 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
V+WT +I + G EA+ V G++P+ T V VL AC + G +
Sbjct: 182 PSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETV 241
Query: 341 FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ R + ++ VDL + G + +A E M +D +++ A++
Sbjct: 242 W-RAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDA-VAWGAMVGG 294
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 154/465 (33%), Positives = 248/465 (53%), Gaps = 35/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSI 58
MG+ +HA V + ++D++V N LI Y + AR +F+ +P R + SW ++S
Sbjct: 137 MGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSA 196
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y + E L +F Q+ + D + LV + +A L+ L G+++H K+GLE
Sbjct: 197 YAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETE 256
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ +L MYAKC + V A+ +FD++
Sbjct: 257 PDLLISLNTMYAKCGQ--------------------------------VATAKILFDKMK 284
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+++LW +M+ G K ++A++LF +MI++ V PD + S +SAC+ + +L+ R
Sbjct: 285 SPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARW 344
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+ ++ +++ D F+ +ALIDM++KCGS+E A F +T +DVV W+ MI G +G
Sbjct: 345 MDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQ 404
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EA+ ++ MER G+ PN+ TF+ +L AC HSG++ EG F RM +++ P +H+
Sbjct: 405 AREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMAD-HKINPQQQHYA 463
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C++DLL RAG L QA E IK MP + + ALLSAC + +LGK A + +
Sbjct: 464 CIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPS 523
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ YV LSN YA W VAE R MKE K G S ++++
Sbjct: 524 NTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVR 568
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 157/335 (46%), Gaps = 30/335 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +HA + L ++ LIH T AR +FD +P V WN ++ Y+
Sbjct: 38 RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRN 97
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ + L+++ ++ + D T L AC L L G+ VH ++G E + ++
Sbjct: 98 NHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQ 157
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N L+ +YAKC+ + A +F+ + + ++ I
Sbjct: 158 NGLIALYAKCRRLGCARTVFEGL------------------------------PLPERTI 187
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +++ + +P EALE+F +M V PD +VSVL+A + L +L+ GR +H
Sbjct: 188 VSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHAS 247
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+++ + + + +L MY+KCG + A + F K +++ W MI G A G +A
Sbjct: 248 VMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDA 307
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+ +F++M K ++P+ + S ++AC G + +
Sbjct: 308 IDLFHEMINKDVRPDTISITSAISACAQVGSLEQA 342
>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
Length = 987
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/498 (31%), Positives = 266/498 (53%), Gaps = 36/498 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H V K L S + V NS+++ YG+ AR +F++M R V SWN ++S+Y
Sbjct: 365 VGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYT 424
Query: 61 DFSDSGEVLILFKQLIFEGIVA--------------------------------DKITLV 88
+ +F+ ++ IV+ D T+
Sbjct: 425 HQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVT 484
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE-MGS 147
+ SACA L L GK +H Y + G+ + NAL+ YAK ++ A R+ D+ + +
Sbjct: 485 SVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVA 544
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
N++S L+ GY+ + ARE+FD + ++D++ W +M+ G + Q +EA+ELF+
Sbjct: 545 DLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRS 604
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
MI G P+ + +VLSAC+SL+ L YG+ +H +++ Q V A+I +Y++ GS
Sbjct: 605 MILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGS 664
Query: 268 LEEALVTFYKTDC--KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
+ A F + C K+ +TWT+MI +A +GLG +A+ +F +M R G+KP+ T+V VL
Sbjct: 665 VPLARRVFDQI-CWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVL 723
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+AC H+G + +G + + +M + + P + H+ C+VDL +RAGLL +A EFI+ MP
Sbjct: 724 SACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPD 783
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
+ + +LL+AC DL + A ++ + + AY L+N Y+ G W + A +
Sbjct: 784 TVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKL 843
Query: 446 MKELQTRKKPGNSIIDLK 463
K+ +K+ G S ++
Sbjct: 844 RKDKGVKKETGFSWTHVR 861
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 137/550 (24%), Positives = 241/550 (43%), Gaps = 114/550 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMAL----FTDARVLFDKMPF--RDVGSWNTL 55
G+ +HAH K L Y+ N+L+ +Y + + F +AR LFD +P+ R+ +WN+L
Sbjct: 228 GRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWNSL 287
Query: 56 MSIYNDFSDSGEVLILFKQL-------------------------------IFEGIVADK 84
+S+Y + ++F ++ + EG +
Sbjct: 288 LSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQ 347
Query: 85 ITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE 144
TL + S+CA +E G+ VH + K+GL + + N++L MY KC + + A +F+
Sbjct: 348 FTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFER 407
Query: 145 MGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
M R++ S N++++ Y ++LA +F+ +V++ IV W +++ G + AL+
Sbjct: 408 M-QVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKF 466
Query: 205 FKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
F +M+ + PD + SVLSAC++L L+ G+ +H +IL+ + + + ALI Y+
Sbjct: 467 FSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYA 526
Query: 264 KCGSLEEA-------------LVTFYK--------------------TDCKDVVTWTTMI 290
K GS+E A +++F + +DV+ WT MI
Sbjct: 527 KSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMI 586
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL---------- 340
G G +EA+ +F M G +PN T +VL+AC + G Q+
Sbjct: 587 VGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQE 646
Query: 341 ------------FRRMGGVYRVQPTIEH---------FVCLVDLLSRAGLLYQA----EE 375
+ R G V + + + ++ +++ GL QA EE
Sbjct: 647 QSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEE 706
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK----LGNQSHEAYVLLSNFYA 431
+++ D I+Y +LSAC D GK+ M + SH Y + + +A
Sbjct: 707 MVRVGVKPD-HITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSH--YACMVDLHA 763
Query: 432 LEGHWTEVAE 441
G TE E
Sbjct: 764 RAGLLTEAHE 773
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 156/352 (44%), Gaps = 45/352 (12%)
Query: 103 GKTVHCYATKVGLEYMLNMENALLLMYAKCKE----MDEALRLFDEMG-SRRNIVSLNIL 157
G+ +H +A K GL + N LL YA EA LFD++ +RRN + N L
Sbjct: 228 GRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWNSL 287
Query: 158 INGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217
++ Y + A VF E+ D+D V W M+ G ++ + +A++ F M+ EG P +
Sbjct: 288 LSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQ 347
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
+ +VLS+C+++ GR VH F+++ ++ V +++ MY KCG E A F +
Sbjct: 348 FTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFER 407
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+ V +W M+ + G A+ +F M + I ++ +++A +GL
Sbjct: 408 MQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI----VSWNTIIAGYNQNGLDGMA 463
Query: 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
+ F RM ++P D F + ++LSAC
Sbjct: 464 LKFFSRMLSASSMEP-------------------------------DAF-TVTSVLSACA 491
Query: 398 TYSEFDLGKKVANNMMKLGNQ-SHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+GK++ + +++ G S + L + YA G V ARR M +
Sbjct: 492 NLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSG---SVETARRIMDQ 540
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 150/462 (32%), Positives = 243/462 (52%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH K LD +I V N+++ Y + +A ++FD M +D SWN +++ +
Sbjct: 391 GIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQ 450
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF ++ + D T + ACA + L+YG VH K G+ +
Sbjct: 451 NEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFV 510
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+A++ MY KC + EA ++ + + R
Sbjct: 511 GSAIIDMYCKCGMLVEAEKIHERLEERTT------------------------------- 539
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W S++ G KQ E AL F +M+ GV PD +VL C++L+ ++ G+ +H
Sbjct: 540 -VSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHG 598
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
IL+ + D ++ + ++DMYSKCG+++++ + F K +D VTW+ MI A +GLG +
Sbjct: 599 QILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGED 658
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+++F +M+ + +KPN F+SVL AC H G + +G FR M Y + P +EH+ C+V
Sbjct: 659 AIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMV 718
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R+G + +A E I+ MP E + ++ LL C ++ +K AN++++L Q
Sbjct: 719 DLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSS 778
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AYVLLSN YA+ G W EVA+ R MK + +K+PG S I ++
Sbjct: 779 AYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVR 820
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 193/408 (47%), Gaps = 41/408 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LHA+ KT D VG + + Y + DAR +F+ P S N L+ Y
Sbjct: 289 LGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYA 348
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L +F+ L + D+I+L +AC+ ++ G +H A K GL++ +
Sbjct: 349 RQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNIC 408
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N +L MYAKC + EA +FD DME+ K
Sbjct: 409 VANTILDMYAKCGALMEACLIFD-------------------DMEI-------------K 436
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V W +++ + + EE L LF M+ + PD+ SV+ AC+ L YG VH
Sbjct: 437 DAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVH 496
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++++ + D FV +A+IDMY KCG L EA + + + V+W ++I G ++ G
Sbjct: 497 GRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGE 556
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC- 359
AL F +M + G+ P+ T+ +VL C + + G Q+ G + ++Q + ++
Sbjct: 557 NALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIH---GQILKLQLHSDVYIAS 613
Query: 360 -LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406
+VD+ S+ G + + + P D ++++ A++ A Y+ LG+
Sbjct: 614 TIVDMYSKCGNMQDSRIMFEKAPKRD-YVTWSAMICA---YAYHGLGE 657
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 108/429 (25%), Positives = 178/429 (41%), Gaps = 73/429 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK HA +T T ++V N L+ FY + A +FDKMP RDV SWNT++ Y
Sbjct: 57 GKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAG 116
Query: 62 FSDSGEVLILFKQLIFEGIVA-------------------------------DKITLVIL 90
+ LF + +V+ D T ++
Sbjct: 117 VGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVV 176
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
AC +E G VHC A ++G + + AL+ MY+ CK++D A +F EM R +
Sbjct: 177 LKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNS 236
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
V W +++ G V+ + E L+L+K M+D
Sbjct: 237 --------------------------------VCWSAVIAGYVRNDRFTEGLKLYKVMLD 264
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
EG+ + S +C+ LS + G +H + L+ N D V TA +DMY+KC + +
Sbjct: 265 EGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVD 324
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F + +I G A EAL +F +++ + +E + L AC
Sbjct: 325 ARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSA 384
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRAGLLYQAEEFIKIMPAEDKF 386
EG QL V+ ++ +C ++D+ ++ G L +A M +D
Sbjct: 385 IKGYLEGIQLHG-----LAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDA- 438
Query: 387 ISYKALLSA 395
+S+ A+++A
Sbjct: 439 VSWNAIIAA 447
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 182/398 (45%), Gaps = 40/398 (10%)
Query: 2 GKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
G GL H + DSD+ G +L+ Y A +F +MP R+ W+ +++ Y
Sbjct: 187 GLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGY 246
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L L+K ++ EG+ + T F +CA L G +H YA K Y
Sbjct: 247 VRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDN 306
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ A L MYAKC M +A ++F+ + S N LI GY AR+ D+++
Sbjct: 307 IVGTATLDMYAKCDRMVDARKVFNTFPNPTR-QSHNALIVGY--------ARQ--DQVL- 354
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
EALE+F+ + + DE + L+ACS++ G +
Sbjct: 355 --------------------EALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQL 394
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ + + V ++DMY+KCG+L EA + F + KD V+W +I
Sbjct: 395 HGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHV 454
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV- 358
E L +F M R ++P++ TF SV+ AC + G ++ R V + ++ FV
Sbjct: 455 EETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGR---VIKSGMGLDWFVG 511
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
++D+ + G+L +AE+ + + E +S+ +++S
Sbjct: 512 SAIIDMYCKCGMLVEAEKIHERLE-ERTTVSWNSIISG 548
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 128/257 (49%), Gaps = 1/257 (0%)
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
K+T +F C+ L+ ++ GK H T G + + N LL Y KC ++ A +FD
Sbjct: 38 KLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFD 97
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
+M +R+++S N +I GY + ++ A+ +FD + ++D+V W SM+ ++ +++E
Sbjct: 98 KM-PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIE 156
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
+F KM + D VL AC+ + + G VH +Q D TAL+DMYS
Sbjct: 157 IFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYS 216
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
C L+ A F + ++ V W+ +I G E L+++ M +G+ ++ATF S
Sbjct: 217 TCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFAS 276
Query: 324 VLAACRHSGLITEGCQL 340
+C G QL
Sbjct: 277 AFRSCAGLSAFELGTQL 293
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 77/149 (51%), Gaps = 7/149 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K L SD+Y+ ++++ Y + D+R++F+K P RD +W+ ++ Y
Sbjct: 592 LGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYA 651
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLE 116
+ + LF+++ + + + + + ACA + + LHY + + + GL+
Sbjct: 652 YHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMR---SHYGLD 708
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEM 145
+ + ++ + + +++EAL L + M
Sbjct: 709 PQMEHYSCMVDLLGRSGQVNEALELIESM 737
>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 156/448 (34%), Positives = 253/448 (56%), Gaps = 4/448 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ +L+ Y + AR + D MP R+ SW TL++ + D+ E L L+ Q++
Sbjct: 312 DVVSWTALLDVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQML 371
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+G + + SACA L+ L G +H A K+G L + ++L+ MY KCK+
Sbjct: 372 ADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCT 431
Query: 137 EALRLFDEMGSRRNIVSLNILINGY-IDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195
A R+F+ + +N V N LI+GY + ++V+ A +F+++ ++ V W +M+ G +
Sbjct: 432 YAQRVFNSL-PEKNTVCWNSLISGYSWNGKMVE-AEGLFNKMPARNSVSWNTMISGYAEN 489
Query: 196 KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK 255
++ +AL F M+ G P E + SVL AC++L +L+ GR+VH I++ I + F+
Sbjct: 490 RRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMG 549
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
TAL DMY+K G L+ + FY+ K+ +TWT M++GLA G E++ +F M GI
Sbjct: 550 TALCDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIA 609
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
PNE TF+++L AC H GL+ + F M + + P +H+ C+VD+L+RAG L +AEE
Sbjct: 610 PNEHTFLAILFACSHCGLVEQAIHYFETMQA-HGIPPKSKHYTCMVDVLARAGCLPEAEE 668
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
+ + +E S+ +LLSAC TY ++G++ A + +L + YVLLSN YA G
Sbjct: 669 LLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGK 728
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDLK 463
W + AE R M+ +K G S + L+
Sbjct: 729 WKDAAETRILMQGASLKKDAGCSWLQLR 756
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 119/466 (25%), Positives = 206/466 (44%), Gaps = 49/466 (10%)
Query: 36 DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
DA L+++ P V + ++S + + +F++++ + + +TL+ + AC
Sbjct: 198 DAVELYERCPLHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACV 257
Query: 96 RLEKLHYGKTVHCYATKVGL-EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSL 154
+ V A K L E + + N+L+ +Y + + A R+FD+M R++VS
Sbjct: 258 GAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDM-EVRDVVSW 316
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
L++ Y D+ +D AR V D + ++ V W +++ + EAL+L+ +M+ +G
Sbjct: 317 TALLDVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCR 376
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC--------- 265
P+ SVLSAC++L +L+ G +H L+ + + FV ++LIDMY KC
Sbjct: 377 PNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRV 436
Query: 266 ----------------------GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
G + EA F K ++ V+W TMI G A +AL
Sbjct: 437 FNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDAL 496
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----C 359
FY M G P E T SVL AC + + G RM V+ IE +
Sbjct: 497 NYFYAMLASGHIPGEITLSSVLLACANLCSLEMG-----RMVHAEIVKLGIEDNIFMGTA 551
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
L D+ +++G L + MP E I++ A++ + + +M++ G
Sbjct: 552 LCDMYAKSGDLDSSRRVFYQMP-EKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAP 610
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+E + L+ +A H V +A + +Q P S KHY
Sbjct: 611 NE-HTFLAILFACS-HCGLVEQAIHYFETMQAHGIPPKS----KHY 650
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 157/358 (43%), Gaps = 75/358 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFT-------------------------- 35
G +HA+ K ++++V +SLI Y + T
Sbjct: 398 GTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSW 457
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+A LF+KMP R+ SWNT++S Y + G+ L F ++ G + +ITL +
Sbjct: 458 NGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSV 517
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
ACA L L G+ VH K+G+E + M AL MYAK ++D + R+F +M + N
Sbjct: 518 LLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEKNN 577
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
I W +M+ G + EE++ LF+ MI+
Sbjct: 578 IT--------------------------------WTAMVQGLAENGFAEESISLFEDMIE 605
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF--ILQNNITQDAFVKTALIDMYSKCGSL 268
G+ P+E +++L ACS ++ + +H F + + I + T ++D+ ++ G L
Sbjct: 606 NGIAPNEHTFLAILFACSHCGLVE--QAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCL 663
Query: 269 EEALVTFYKTDCK-DVVTWTTMIEGLANYG---LGNEALRVFYQMERKGIKPNEATFV 322
EA K + D +W++++ + Y +G A + +++E K N A +V
Sbjct: 664 PEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELE----KDNTAGYV 717
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 126/293 (43%), Gaps = 39/293 (13%)
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
+ K ++ A RLF M +++VS +++ + V A E+++ + + +M
Sbjct: 159 HVKAGDIASARRLFYGM-PEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAM 217
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ G V+ + ++A +F+KM+ V P+ ++ V+ AC V ++ N+
Sbjct: 218 ISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNL 277
Query: 249 TQDAF-VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
+ + V +LI +Y + G A F + +DVV+WT +++ A+ G + A RV
Sbjct: 278 FEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLD 337
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367
M + NE ++ +++A G E +L+ +M +P I F
Sbjct: 338 AMPAR----NEVSWGTLIARHEQKGDTAEALKLYSQMLA-DGCRPNISCF---------- 382
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
++LSAC T + G ++ N +K+G+ ++
Sbjct: 383 ----------------------SSVLSACATLQDLRGGTRIHANALKMGSSTN 413
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +HA + K ++ +I++G +L Y + +R +F +MP ++ +W ++
Sbjct: 529 MGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLA 588
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLE 116
+ + E + LF+ +I GI ++ T + + AC+ + +HY +T+ + +
Sbjct: 589 ENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSK 648
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAREV 173
+ M + L A+ + EA L ++ S + S + L++ Y + E+ + A +
Sbjct: 649 HYTCMVDVL----ARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKK 704
Query: 174 FDEIVDKD----IVLWRSMMHGCVKAKQPEE 200
E+ +KD VL +M C K K E
Sbjct: 705 LHEL-EKDNTAGYVLLSNMYASCGKWKDAAE 734
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 93/254 (36%), Gaps = 57/254 (22%)
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA---FVKTAL 258
L L + G+ D V ++L+A ++ + + G F ++ + DA F +
Sbjct: 100 LSLHAHALRSGLATDRSVASNLLTAYAAFA--RAGDRDQAF--RDCVAADAASSFTYDFM 155
Query: 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG--------------------- 297
+ + K G + A FY K VV++TTM++ L G
Sbjct: 156 VSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFT 215
Query: 298 ----------LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL---------ITEGC 338
L +A VF +M ++PN T + V+ AC +G + C
Sbjct: 216 AMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKC 275
Query: 339 QLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT 398
LF + +IE L+ L R G A M D +S+ ALL
Sbjct: 276 NLFEK---------SIEVHNSLITLYLRMGDAAAARRVFDDMEVRD-VVSWTALLDVYAD 325
Query: 399 YSEFDLGKKVANNM 412
+ D ++V + M
Sbjct: 326 LGDLDGARRVLDAM 339
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 253/463 (54%), Gaps = 33/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HA+ K +DS++++GNSLI YG+ F+ MP +D+ SW T+++ Y
Sbjct: 371 GMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQ 430
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L L +++ E + D + + + AC+ L+ K +H Y K GL
Sbjct: 431 NECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLA----- 485
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+I+ N ++N Y ++ LVD AR VF+ I KD
Sbjct: 486 ----------------------------DILIQNAIVNVYGELALVDYARHVFESINSKD 517
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W SM+ CV EALELF +I+ + PD +VSVL A ++LS+L+ G+ +H
Sbjct: 518 IVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHG 577
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F+++ + + +L+DMY++CG++E A F +D++ WT+MI +G G +
Sbjct: 578 FLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKD 637
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ +F +M + + P+ TF+++L AC HSGL+ EG Q F M Y+++P EH+ CLV
Sbjct: 638 AIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLV 697
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL+R+ L +A F++ MP E + ALL AC +S DLG+ A +++L ++
Sbjct: 698 DLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSG 757
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVL+SN +A +G W +V E R MK + +KKPG S I++++
Sbjct: 758 NYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVEN 800
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 189/400 (47%), Gaps = 43/400 (10%)
Query: 2 GKGLHAHVTKTA--LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
G+ LHAH KT LDS +++ +H YG+ F DA +FDKM R + +WN ++
Sbjct: 65 GQQLHAHFLKTQNYLDS-VFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGAC 123
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E + L+K++ G+ D T + AC ++ G +H A K G +
Sbjct: 124 VSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFV 183
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NAL+ MYAKC ++ A LFD +G ++ +
Sbjct: 184 FVCNALIAMYAKCGDLGGARVLFD---------------SGLMEKD-------------- 214
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D V W S++ V + EAL LF++M + GV + VS L AC + ++ GR +
Sbjct: 215 -DPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGI 273
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H IL++N D +V ALI MY+ CG +E+A F KD V+W T++ G+ +
Sbjct: 274 HAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMY 333
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV- 358
++A+ F M+ G KP++ + ++++AA S + G ++ Y ++ I+ +
Sbjct: 334 SDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVH-----AYAIKHGIDSNMH 388
Query: 359 ---CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
L+D+ + + + MP +D IS+ +++
Sbjct: 389 IGNSLIDMYGKCCCVKYMGSAFEYMPEKD-LISWTTIIAG 427
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 198/400 (49%), Gaps = 45/400 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G+G+HA + K+ +D+YV N+LI Y DA +F M F+D SWNTL+S +
Sbjct: 269 IGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMV 328
Query: 59 YND-FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
ND +SD+ + F+ + G D+++++ + +A R L G VH YA K G++
Sbjct: 329 QNDMYSDA---INHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDS 385
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+++ N+L+ MY KC MGS F+ +
Sbjct: 386 NMHIGNSLIDMYGKCC-------CVKYMGS-------------------------AFEYM 413
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+KD++ W +++ G + + +AL L +K+ E + D ++ S+L ACS L + + +
Sbjct: 414 PEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIK 473
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H ++L+ + D ++ A++++Y + ++ A F + KD+V+WT+MI + G
Sbjct: 474 EIHGYVLKGGLA-DILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNG 532
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
L EAL +F + I+P+ T VSVL A + +G ++ G + R +E
Sbjct: 533 LAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIH---GFLIRKGFFLEGL 589
Query: 358 VC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ LVD+ +R G + A + D I + ++++A
Sbjct: 590 IANSLVDMYARCGTMENARNIFNYVKQRD-LILWTSMINA 628
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/402 (24%), Positives = 188/402 (46%), Gaps = 43/402 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDK--MPFRDVGSWNTLMSI 58
+G +H K ++V N+LI Y + ARVLFD M D SWN+++S
Sbjct: 166 LGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISA 225
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ +S E L LF+++ G+ ++ T V AC + G+ +H K
Sbjct: 226 HVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTD 285
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + NAL+ MYA C +M++A R+F M +
Sbjct: 286 VYVSNALIAMYANCGQMEDAERVFKSM--------------------------------L 313
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
KD V W +++ G V+ +A+ F+ M D G PD+ ++++++A +NL G
Sbjct: 314 FKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGME 373
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH + +++ I + + +LIDMY KC ++ F KD+++WTT+I G A
Sbjct: 374 VHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNEC 433
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
+AL + +++ + + + S+L AC SGL +E +L + + G Y ++ + +
Sbjct: 434 HLDALNLLRKVQLEKMDVDPMMIGSILLAC--SGLKSE--KLIKEIHG-YVLKGGLADIL 488
Query: 359 ---CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
+V++ L+ A + + ++D +S+ ++++ C+
Sbjct: 489 IQNAIVNVYGELALVDYARHVFESINSKD-IVSWTSMITCCV 529
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 135/306 (44%), Gaps = 23/306 (7%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A +VFD++ ++ I W +M+ CV A + EA+EL+K+M GV+ D VL AC +
Sbjct: 101 AVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGA 160
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK--TDCKDVVTWT 287
+ G +H ++ FV ALI MY+KCG L A V F + D V+W
Sbjct: 161 FKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWN 220
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
++I G EAL +F +M+ G++ N TFVS L AC EG + G+
Sbjct: 221 SIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQAC-------EGPTFIKIGRGI 273
Query: 348 YRVQPTIEHFV------CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
+ V HF L+ + + G + AE K M +D +S+ LLS +
Sbjct: 274 HAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKD-CVSWNTLLSGMVQNDM 332
Query: 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV-----AEARRNMKELQTRKKPG 456
+ +M G + + VL N A G + A + + G
Sbjct: 333 YSDAINHFQDMQDSGQKPDQVSVL--NMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIG 390
Query: 457 NSIIDL 462
NS+ID+
Sbjct: 391 NSLIDM 396
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 18/229 (7%)
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
P ++ L C+S L G+ +H F+ N F+ T + MY KCGS +A+
Sbjct: 44 PLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVK 103
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC----- 328
F K + + TW MI + G EA+ ++ +M G+ + TF VL AC
Sbjct: 104 VFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKE 163
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVC--LVDLLSRAGLLYQAEE-FIKIMPAEDK 385
R G G + GG FVC L+ + ++ G L A F + +D
Sbjct: 164 RRLGCEIHGVAVKCGYGGFV--------FVCNALIAMYAKCGDLGGARVLFDSGLMEKDD 215
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
+S+ +++SA + E + M ++G +S+ Y +S A EG
Sbjct: 216 PVSWNSIISAHVGEGESLEALSLFRRMQEVGVESN-TYTFVSALQACEG 263
>gi|296084817|emb|CBI27699.3| unnamed protein product [Vitis vinifera]
Length = 807
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/466 (32%), Positives = 258/466 (55%), Gaps = 5/466 (1%)
Query: 1 MGKGLHAHVTK-TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+ KG+H ++ + L D VGN+L+ FY + A F + +D+ SWN ++ +
Sbjct: 306 VAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAF 365
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL---E 116
+ ++ L ++ EGI D IT++ + A + ++ K H Y+ + GL +
Sbjct: 366 TESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGD 425
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ N +L YAKC M A+ +F + +RN+V+ N +I+GY++ D A +F+
Sbjct: 426 AGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNT 485
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ + D+ W M+ + P++AL LF ++ +G+ PD ++S+L AC+ ++++
Sbjct: 486 MSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHML 545
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
R H ++++ D + A IDMYSKCGS+ A F + KD+V +T M+ G A +
Sbjct: 546 RQCHGYVIRACF-NDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMH 604
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G+G EALR+F M G+KP+ +VL AC H+GL+ EG ++F + V+ QPT+E
Sbjct: 605 GMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQ 664
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL+R G + A F+ MP E + LL AC T+ E +LG+ VA+++ K+
Sbjct: 665 YACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIE 724
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ + YV++SN YA + W V E RR M+ + +K G S I++
Sbjct: 725 SDNIGNYVVMSNLYAADARWDGVMEIRRLMRTRELKKPAGCSWIEV 770
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 112/424 (26%), Positives = 203/424 (47%), Gaps = 49/424 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALF-TDARVLFDKMPFRDVGSWNTLMSIYN 60
GK +H++V K+ L+S GN+LI Y + L +DA F+++ F+DV SWN +++ ++
Sbjct: 99 GKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFS 158
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK---LHYGKTVHCYA-TKVGLE 116
+ + E LF ++ I + T+ + CA LE+ YGK VHC+ ++ L
Sbjct: 159 ENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRMELV 218
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+++ N+L+ Y + +M++A LF M S R++VS N +I GY
Sbjct: 219 EDVSVINSLMSFYLRIGQMEKAEFLFRNMKS-RDLVSWNAIIAGY--------------- 262
Query: 177 IVDKDIVLWRSMMHGCVKAKQPE--EALELFKKMID-EGVTPDEEVMVSVLSACSSLSNL 233
A E +ALELF + I E + PD +VSVL AC+ + NL
Sbjct: 263 ------------------ASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNL 304
Query: 234 QYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
Q + +H +I+++ + +D V AL+ Y+KC + AL TF KD+++W +++
Sbjct: 305 QVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDA 364
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVL---AACRHSGLITEGCQLFRRMGGVY- 348
G + + + M R+GI+P+ T ++++ AA + E R G +
Sbjct: 365 FTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQG 424
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
PT+ + ++D ++ G + A + + ++ +++S + S D +
Sbjct: 425 DAGPTLGN--GMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAI 482
Query: 409 ANNM 412
N M
Sbjct: 483 FNTM 486
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 113/463 (24%), Positives = 205/463 (44%), Gaps = 93/463 (20%)
Query: 2 GKGLHAHV-TKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
GK +H HV + L D+ V NSL+ FY R+ A LF M RD+ SWN +++ Y
Sbjct: 204 GKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYA 263
Query: 61 DFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYM 118
+ + L LF + I E I D +TLV + ACA + L K +H Y + GL
Sbjct: 264 SNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLRED 323
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ NALL YAKC AL+ F M SR++++S N +++ + +
Sbjct: 324 TSVGNALLSFYAKCNYTQAALQTF-LMISRKDLISWNAILDAFTE--------------- 367
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
GC + L M+ EG+ PD +++++ +++S ++ +
Sbjct: 368 -----------SGC-----ETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKE 411
Query: 239 VHRFILQNNITQDAFVKT---ALIDMYSKCGSLEEALVTFYK-TDCKDVVTWTTMIEGLA 294
H + ++ + Q T ++D Y+KCG+++ A+ F ++ ++VVT +MI G
Sbjct: 412 THSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYV 471
Query: 295 N-------YGLGN------------------------EALRVFYQMERKGIKPNEATFVS 323
N Y + N +AL +F++++ +G+KP+ T +S
Sbjct: 472 NSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMS 531
Query: 324 VLAACRH----------SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
+L AC H G + C R+ G + +D+ S+ G ++ A
Sbjct: 532 ILPACAHMASVHMLRQCHGYVIRACFNDVRLNGAF------------IDMYSKCGSVFGA 579
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ P +D + + A++ + + ++ + M++LG
Sbjct: 580 YKLFLSSPQKD-LVMFTAMVGGFAMHGMGEEALRIFSYMLELG 621
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 125/262 (47%), Gaps = 28/262 (10%)
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE-EALELFKKM--IDEGV 213
L+N Y +D ++F E+ +D V+W ++ G + E E + LF+ M ++E
Sbjct: 19 LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEA- 77
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL-EEAL 272
P+ + VL C+ L G+ VH +++++ + ALI MY+KCG + +A
Sbjct: 78 KPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAY 136
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC---- 328
F + + KDVV+W +I G + EA ++F+ M + I+PN AT S+L C
Sbjct: 137 AAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLE 196
Query: 329 -----RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS---RAGLLYQAEEFIKIM 380
R+ + C + RRM +E + L+S R G + +AE + M
Sbjct: 197 ENAGYRYGKEVH--CHVLRRM-------ELVEDVSVINSLMSFYLRIGQMEKAEFLFRNM 247
Query: 381 PAEDKFISYKALLSACITYSEF 402
+ D +S+ A+++ + E+
Sbjct: 248 KSRD-LVSWNAIIAGYASNGEW 268
>gi|225463207|ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08490-like [Vitis vinifera]
Length = 868
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/466 (32%), Positives = 258/466 (55%), Gaps = 5/466 (1%)
Query: 1 MGKGLHAHVTK-TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+ KG+H ++ + L D VGN+L+ FY + A F + +D+ SWN ++ +
Sbjct: 367 VAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAF 426
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL---E 116
+ ++ L ++ EGI D IT++ + A + ++ K H Y+ + GL +
Sbjct: 427 TESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGD 486
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ N +L YAKC M A+ +F + +RN+V+ N +I+GY++ D A +F+
Sbjct: 487 AGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNT 546
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ + D+ W M+ + P++AL LF ++ +G+ PD ++S+L AC+ ++++
Sbjct: 547 MSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHML 606
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
R H ++++ D + A IDMYSKCGS+ A F + KD+V +T M+ G A +
Sbjct: 607 RQCHGYVIRACF-NDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMH 665
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G+G EALR+F M G+KP+ +VL AC H+GL+ EG ++F + V+ QPT+E
Sbjct: 666 GMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQ 725
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL+R G + A F+ MP E + LL AC T+ E +LG+ VA+++ K+
Sbjct: 726 YACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIE 785
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ + YV++SN YA + W V E RR M+ + +K G S I++
Sbjct: 786 SDNIGNYVVMSNLYAADARWDGVMEIRRLMRTRELKKPAGCSWIEV 831
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 170/333 (51%), Gaps = 43/333 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALF-TDARVLFDKMPFRDVGSWNTLMSIYN 60
GK +H++V K+ L+S GN+LI Y + L +DA F+++ F+DV SWN +++ ++
Sbjct: 160 GKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFS 219
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK---LHYGKTVHCYA-TKVGLE 116
+ + E LF ++ I + T+ + CA LE+ YGK VHC+ ++ L
Sbjct: 220 ENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRMELV 279
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+++ N+L+ Y + +M++A LF M S R++VS N +I GY
Sbjct: 280 EDVSVINSLMSFYLRIGQMEKAEFLFRNMKS-RDLVSWNAIIAGY--------------- 323
Query: 177 IVDKDIVLWRSMMHGCVKAKQPE--EALELFKKMID-EGVTPDEEVMVSVLSACSSLSNL 233
A E +ALELF + I E + PD +VSVL AC+ + NL
Sbjct: 324 ------------------ASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNL 365
Query: 234 QYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
Q + +H +I+++ + +D V AL+ Y+KC + AL TF KD+++W +++
Sbjct: 366 QVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDA 425
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G + + + M R+GI+P+ T ++++
Sbjct: 426 FTESGCETHLVNLLHWMLREGIRPDSITILTII 458
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 113/463 (24%), Positives = 205/463 (44%), Gaps = 93/463 (20%)
Query: 2 GKGLHAHV-TKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
GK +H HV + L D+ V NSL+ FY R+ A LF M RD+ SWN +++ Y
Sbjct: 265 GKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYA 324
Query: 61 DFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYM 118
+ + L LF + I E I D +TLV + ACA + L K +H Y + GL
Sbjct: 325 SNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLRED 384
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ NALL YAKC AL+ F M SR++++S N +++ + +
Sbjct: 385 TSVGNALLSFYAKCNYTQAALQTF-LMISRKDLISWNAILDAFTE--------------- 428
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
GC + L M+ EG+ PD +++++ +++S ++ +
Sbjct: 429 -----------SGC-----ETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKE 472
Query: 239 VHRFILQNNITQDAFVKT---ALIDMYSKCGSLEEALVTFYK-TDCKDVVTWTTMIEGLA 294
H + ++ + Q T ++D Y+KCG+++ A+ F ++ ++VVT +MI G
Sbjct: 473 THSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYV 532
Query: 295 N-------YGLGN------------------------EALRVFYQMERKGIKPNEATFVS 323
N Y + N +AL +F++++ +G+KP+ T +S
Sbjct: 533 NSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMS 592
Query: 324 VLAACRH----------SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
+L AC H G + C R+ G + +D+ S+ G ++ A
Sbjct: 593 ILPACAHMASVHMLRQCHGYVIRACFNDVRLNGAF------------IDMYSKCGSVFGA 640
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ P +D + + A++ + + ++ + M++LG
Sbjct: 641 YKLFLSSPQKD-LVMFTAMVGGFAMHGMGEEALRIFSYMLELG 682
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 144/332 (43%), Gaps = 60/332 (18%)
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
L L +C + + +G +H YA K+G ++ LL +YAK +D +LF
Sbjct: 42 LAALLKSCVAISAIRFGSVLHGYALKLGHVSCQSLCKGLLNLYAKSGALDYCNKLFG--- 98
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE-EALELF 205
E+ +D V+W ++ G + E E + LF
Sbjct: 99 -----------------------------EMDQRDPVIWNIVLSGLAGFQSHEAEVMRLF 129
Query: 206 KKM--IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
+ M ++E P+ + VL C+ L G+ VH +++++ + ALI MY+
Sbjct: 130 RAMHMVNEA-KPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYA 187
Query: 264 KCGSL-EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
KCG + +A F + + KDVV+W +I G + EA ++F+ M + I+PN AT
Sbjct: 188 KCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIA 247
Query: 323 SVLAAC---------RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS---RAGLL 370
S+L C R+ + C + RRM +E + L+S R G +
Sbjct: 248 SILPVCASLEENAGYRYGKEVH--CHVLRRM-------ELVEDVSVINSLMSFYLRIGQM 298
Query: 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
+AE + M + D +S+ A+++ + E+
Sbjct: 299 EKAEFLFRNMKSRD-LVSWNAIIAGYASNGEW 329
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 163/463 (35%), Positives = 242/463 (52%), Gaps = 33/463 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H K + N+L+ Y + + A ++FD M R V +W +L++ Y
Sbjct: 16 LGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYA 75
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E + LF ++ EG+ D T+ + ACA L GK VH Y + ++ +
Sbjct: 76 REGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIF 135
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC M++A VF E+ K
Sbjct: 136 VCNALMDMYAKCGSMEDA--------------------------------NSVFLEMPVK 163
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DI+ W +M+ G K P EAL LF M+ E + PD + +L AC+SL++L G+ VH
Sbjct: 164 DIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVH 222
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
IL+N D V AL+DMY KCG A + F KD++TWT MI G +G GN
Sbjct: 223 GHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGN 282
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ F +M + GI+P+E +F+S+L AC HSGL+ EG + F M V+P +EH+ C+
Sbjct: 283 NAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACI 342
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL+R+G L A +FIK MP E + ALLS C + + L +KVA ++ +L ++
Sbjct: 343 VDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENT 402
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVLL+N YA W EV + R+ + +K PG S I++K
Sbjct: 403 GYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVK 445
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 151/311 (48%), Gaps = 39/311 (12%)
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+V + ACA + G+ VH K + + N LL MYAKC +D A+ +FD M
Sbjct: 1 MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLM- 59
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
S R +V+ LI Y ARE + EA+ LF
Sbjct: 60 SVRTVVTWTSLIAAY--------AREGLSD-----------------------EAIRLFH 88
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
+M EGV+PD + +VL AC+ +L+ G+ VH +I +N++ + FV AL+DMY+KCG
Sbjct: 89 EMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCG 148
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
S+E+A F + KD+++W TMI G + L NEAL +F M + +KP+ T +L
Sbjct: 149 SMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILP 207
Query: 327 ACRHSGLITEGCQLFRRM--GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
AC + G ++ + G + Q LVD+ + G+ A ++P +D
Sbjct: 208 ACASLASLDRGKEVHGHILRNGFFSDQQVAN---ALVDMYVKCGVPVLARLLFDMIPTKD 264
Query: 385 KFISYKALLSA 395
I++ +++
Sbjct: 265 -LITWTVMIAG 274
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 242/462 (52%), Gaps = 32/462 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH+ V KT D D++V L+ Y + TDAR +FD++P ++V SW ++ Y
Sbjct: 120 VGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYI 179
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ GE L LF+ L+ G+ D TLV + AC+R+ L G+ + Y + G +
Sbjct: 180 ESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVF 239
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +L+ MYAKC M+EA R VFD +V+K
Sbjct: 240 VATSLVDMYAKCGSMEEA--------------------------------RRVFDGMVEK 267
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +++ G P+EAL++F +M E V PD MV V SACS L L+ G
Sbjct: 268 DVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWAR 327
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + + + TALID Y+KCGS+ +A F KD V + +I GLA G
Sbjct: 328 GLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVG 387
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A VF QM + G++P+ TFV +L C H+GL+ +G + F M V+ V PTIEH+ C+
Sbjct: 388 AAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCM 447
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDL +RAGLL +A++ I+ MP E I + ALL C + + L + V +++L +
Sbjct: 448 VDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNS 507
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN Y+ W E + R ++ + +K PG S +++
Sbjct: 508 GHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEV 549
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 202/421 (47%), Gaps = 43/421 (10%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IYN 60
K H + + L D Y+ N L+ A A V+F + P ++ +NTL+ + N
Sbjct: 20 KQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSN 79
Query: 61 D-FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK-LHYGKTVHCYATKVGLEYM 118
D F D+ V +Q G D T + AC RL H G ++H K G ++
Sbjct: 80 DAFRDAVSVYASMRQ---HGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWD 136
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ ++ L+ +Y+K + +A ++FDE+ +N+VS +I GYI+
Sbjct: 137 VFVKTGLVCLYSKNGFLTDARKVFDEI-PEKNVVSWTAIICGYIE--------------- 180
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
GC EAL LF+ +++ G+ PD +V +L ACS + +L GR
Sbjct: 181 -----------SGCFG-----EALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRW 224
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+ ++ ++ + FV T+L+DMY+KCGS+EEA F KDVV W+ +I+G A+ G+
Sbjct: 225 IDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGM 284
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM-GGVYRVQPTIEHF 357
EAL VF++M+R+ ++P+ V V +AC G + G M G + P +
Sbjct: 285 PKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLG-- 342
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
L+D ++ G + QA+E K M +D + + A++S V M+K+G
Sbjct: 343 TALIDFYAKCGSVAQAKEVFKGMRRKDCVV-FNAVISGLAMCGHVGAAFGVFGQMVKVGM 401
Query: 418 Q 418
Q
Sbjct: 402 Q 402
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 147/331 (44%), Gaps = 24/331 (7%)
Query: 145 MGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
+G ++ +N+L+ + A VF + +I L+ +++ G V +A+ +
Sbjct: 29 LGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSV 88
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSN-LQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
+ M G PD VL AC+ L + G +H +++ D FVKT L+ +YS
Sbjct: 89 YASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYS 148
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
K G L +A F + K+VV+WT +I G G EAL +F + G++P+ T V
Sbjct: 149 KNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVR 208
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH-FVC--LVDLLSRAGLLYQAEEFIKIM 380
+L AC G + G R + G R ++ + FV LVD+ ++ G + +A M
Sbjct: 209 ILYACSRVGDLASG----RWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGM 264
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNM--MKLGNQSHEAYVLLSNFYALE----- 433
+D + + AL+ Y+ + K+ + M+ N + Y ++ F A
Sbjct: 265 VEKD-VVCWSALIQG---YASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGAL 320
Query: 434 --GHWTEVAEARRNMKELQTRKKPGNSIIDL 462
G+W A + E + G ++ID
Sbjct: 321 ELGNW---ARGLMDGDEFLSNPVLGTALIDF 348
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 32/228 (14%)
Query: 220 MVSVLSACSS--LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
M S L C + L +L + H +L+ + QD ++ L+ + + A V F +
Sbjct: 1 MGSELKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQ 60
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR-------- 329
T ++ + T+I G+ + +A+ V+ M + G P+ TF VL AC
Sbjct: 61 TPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHV 120
Query: 330 ----HSGLITEG--CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
HS +I G +F + G LV L S+ G L A + +P E
Sbjct: 121 GLSLHSLVIKTGFDWDVFVKTG--------------LVCLYSKNGFLTDARKVFDEIP-E 165
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431
+S+ A++ I F + ++++G + +++ L+ YA
Sbjct: 166 KNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRP-DSFTLVRILYA 212
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 162/465 (34%), Positives = 241/465 (51%), Gaps = 36/465 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLMSIYN 60
GK +H + D+ VG ++ YG+ AR +FD M ++ +W+ ++ Y
Sbjct: 239 GKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYV 298
Query: 61 DFSDSGEVLILFKQLIF---EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
E L LF QL+ + IV +TL + CA L L G +HCYA K G
Sbjct: 299 VCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVL 358
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L + N LL MYAKC ++ A+R F+EM DL
Sbjct: 359 DLMVGNTLLSMYAKCGIINGAMRFFNEM----------------------DL-------- 388
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+D V + +++ G V+ EE L +F +M G+ P++ + SVL AC+ L+ L YG
Sbjct: 389 --RDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGS 446
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
H + + T D + ALIDMY+KCG ++ A F + + +V+W TMI +G
Sbjct: 447 CSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHG 506
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+G EAL +F M+ +G+KP++ TF+ +++AC HSGL+ EG F M + + P +EH+
Sbjct: 507 IGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHY 566
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLLSRAGL + FI+ MP E + ALLSAC Y +LG+ V+ + KLG
Sbjct: 567 ACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGP 626
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+S +VLLSN Y+ G W + A+ R KE K PG S I++
Sbjct: 627 ESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEI 671
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 175/343 (51%), Gaps = 37/343 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + + L+S++YV +L+ FY + DA+ +FDKM RDV +WN+++S ++
Sbjct: 138 GREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSL 197
Query: 62 FSDS-GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S EV L Q+ + + + T+V + A A++ L +GK +H + + G +
Sbjct: 198 HEGSYDEVARLLVQMQND-VSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVV 256
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +L +Y KC+ +D A R+FD MG +N V+ + ++ Y+ + D R
Sbjct: 257 VGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYV---VCDFMR--------- 304
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMI---DEGVTPDEEVMVSVLSACSSLSNLQYGR 237
EALELF +++ D+ + + +V+ C++L++L G
Sbjct: 305 -------------------EALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGT 345
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H + +++ D V L+ MY+KCG + A+ F + D +D V++T +I G G
Sbjct: 346 CLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNG 405
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRH-SGLITEGCQ 339
E LR+F +M+ GI P +AT SVL AC H +GL C
Sbjct: 406 NSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCS 448
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 187/408 (45%), Gaps = 49/408 (12%)
Query: 2 GKGLHAHVTK-------TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR--DVGSW 52
GK +H H+ K T L + L+ Y + AR +FDKMP R +V W
Sbjct: 28 GKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLW 87
Query: 53 NTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK 112
N L+ Y E + L+ +++ GI ++ T + AC+ L++ G+ +HC +
Sbjct: 88 NLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKR 147
Query: 113 VGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLARE 172
+ LE + + AL+ YAKC +D+A +FD+M +R++V+ N +I+G+ L
Sbjct: 148 LRLESNVYVSTALVDFYAKCGCLDDAKEVFDKM-HKRDVVAWNSMISGF------SLHEG 200
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
+DE+ L +M ++ V+P+ +V VL A + +++
Sbjct: 201 SYDEVA------------------------RLLVQMQND-VSPNSSTIVGVLPAVAQVNS 235
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD-CKDVVTWTTMIE 291
L++G+ +H F ++ D V T ++D+Y KC ++ A F K+ VTW+ M+
Sbjct: 236 LRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVG 295
Query: 292 GLANYGLGNEALRVFYQ---MERKGIKPNEATFVSVLAACRH-SGLITEGCQLFRRMGGV 347
EAL +F Q ++ I + T +V+ C + + L T C +
Sbjct: 296 AYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSG 355
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ + + + L+ + ++ G++ A F M D +S+ A++S
Sbjct: 356 FVLDLMVGN--TLLSMYAKCGIINGAMRFFNEMDLRDA-VSFTAIISG 400
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 19/191 (9%)
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFIL-------QNNITQDAFVKTALIDMYSKCGSLEE 270
E +L +C +L G+L+H+ +L + N+T L+D+Y C L+
Sbjct: 10 EYCTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKI 69
Query: 271 ALVTFYKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
A F K K+VV W +I A G EA+ ++Y+M GI PN TF VL AC
Sbjct: 70 ARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKAC 129
Query: 329 RHSGLITEG----CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
+EG C + R R++ + LVD ++ G L A+E M D
Sbjct: 130 SALKEASEGREIHCDIKR-----LRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRD 184
Query: 385 KFISYKALLSA 395
+++ +++S
Sbjct: 185 -VVAWNSMISG 194
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 167/494 (33%), Positives = 254/494 (51%), Gaps = 65/494 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY----------------------GRMALFT---- 35
G +H HV K + D+YV SLI Y AL T
Sbjct: 82 GLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYAS 141
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
AR +FD++P +DV SWN ++S Y + + E L LFK+++ + D+ T+V +
Sbjct: 142 RGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTV 201
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SA AR + G+ VH + G L + NAL+ Y+KC EM+ A LF + S ++
Sbjct: 202 ISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGL-SYKD 260
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
++S NILI GY + L +EAL LF++M+
Sbjct: 261 VISWNILIGGYTHLNLY-------------------------------KEALLLFQEMLR 289
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ--NNITQDAFVKTALIDMYSKCGSL 268
G +P++ M+S+L AC+ L + GR +H +I + +T + ++T+LIDMYSKCG +
Sbjct: 290 SGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDI 349
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E A F K + W MI G A +G N A +F +M + IKP++ TFV +L+AC
Sbjct: 350 EAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSAC 409
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
H+G++ G +FR M Y++ P +EH+ C++DLL +GL +AEE I M E +
Sbjct: 410 SHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVI 469
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+ +LL AC + +LG+K A N+ K+ + +YVLLSN YA G W EVA R + +
Sbjct: 470 WCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLND 529
Query: 449 LQTRKKPGNSIIDL 462
+K PG S I++
Sbjct: 530 KGMKKVPGCSSIEI 543
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/399 (31%), Positives = 196/399 (49%), Gaps = 42/399 (10%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WNT+ + D L L+ +I G++ + T L +CA+L+ G +H +
Sbjct: 31 WNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKASKEGLQIHGHVL 90
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K+G E L + +L+ MY + + +++A ++FD S R++VS L+ GY ++ AR
Sbjct: 91 KLGYELDLYVHTSLISMYVQNERLEDAHKVFDR-SSHRDVVSYTALVTGYASRGYIESAR 149
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
+FDEI KD+V W +M+ G V+ +EALELFK+M+ V PDE MV+V+SA +
Sbjct: 150 NMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSG 209
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
+++ GR VH +I + + + ALID YSKCG +E A F KDV++W +I
Sbjct: 210 SIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIG 269
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF----RRMGGV 347
G + L EAL +F +M R G PN+ T +S+L AC H G I G + +R+ GV
Sbjct: 270 GYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGV 329
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFI-----KIMPAEDKF---------------- 386
L+D+ S+ G + A + K +PA +
Sbjct: 330 TNASSL---RTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDI 386
Query: 387 -------------ISYKALLSACITYSEFDLGKKVANNM 412
I++ LLSAC DLG+ + +M
Sbjct: 387 FSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSM 425
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 145/318 (45%), Gaps = 41/318 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ + S++ + N+LI FY + A LF + ++DV SWN L+ Y
Sbjct: 213 LGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYT 272
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYM 118
+ E L+LF++++ G + +T++ + ACA L + G+ +H Y K G+
Sbjct: 273 HLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNA 332
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ +L+ MY+KC +++ A +VF+ ++
Sbjct: 333 SSLRTSLIDMYSKCGDIEA--------------------------------AHQVFNSML 360
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K + W +M+ G + A ++F +M + PD+ V +LSACS L GR
Sbjct: 361 HKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRH 420
Query: 239 VHRFILQN-NITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLAN 295
+ R + N IT +ID+ G +EA +++ + D V W ++++
Sbjct: 421 IFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTME-PDGVIWCSLLKACKM 479
Query: 296 YG---LGNEALRVFYQME 310
+G LG + + +++E
Sbjct: 480 HGNVELGEKFAQNLFKIE 497
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 152/339 (44%), Gaps = 48/339 (14%)
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
E + A VF+ I + ++++W +M G + P AL+L+ MI G+ P+ +L
Sbjct: 11 EGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLL 70
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
+C+ L + G +H +L+ D +V T+LI MY + LE+A F ++ +DVV
Sbjct: 71 KSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVV 130
Query: 285 TWTTMIEGLANYG-----------------------------LGN--EALRVFYQMERKG 313
++T ++ G A+ G GN EAL +F +M +
Sbjct: 131 SYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTN 190
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
++P+E+T V+V++A SG I G Q+ + + ++ L+D S+ G + A
Sbjct: 191 VRPDESTMVTVISASARSGSIELGRQVHSWIAD-HGFGSNLKIVNALIDFYSKCGEMETA 249
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKK---VANNMMKLGNQSHEAYVLLSNFY 430
+ +D IS+ L+ Y+ +L K+ + M++ G ++ +LS +
Sbjct: 250 CGLFLGLSYKD-VISWNILIGG---YTHLNLYKEALLLFQEMLRSGESPNDV-TMLSILH 304
Query: 431 ALE-------GHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A G W V +R +K + S+ID+
Sbjct: 305 ACAHLGAIDIGRWIHVYIDKR-LKGVTNASSLRTSLIDM 342
>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
Length = 687
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 159/455 (34%), Positives = 237/455 (52%), Gaps = 33/455 (7%)
Query: 10 TKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVL 69
+K+ L + +G +L+ Y + AR +FD MP R+ +W+ L+ + S +
Sbjct: 150 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAF 209
Query: 70 ILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
+LFK ++ +G+ ++ ACA L+ L G+ +H K G+ L N+LL M
Sbjct: 210 LLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSM 269
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
YAK L+D A +FDE+ KD V + ++
Sbjct: 270 YAKAG--------------------------------LIDQAIALFDEMAVKDTVSYSAL 297
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ G V+ + EEA +FKKM V PD MVS++ ACS L+ LQ+GR H ++ +
Sbjct: 298 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGL 357
Query: 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
+ + ALIDMY+KCG ++ + F +D+V+W TMI G +GLG EA +F +
Sbjct: 358 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLE 417
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
M G P+ TF+ +L+AC HSGL+ EG F MG Y + P +EH++C+VDLLSR G
Sbjct: 418 MNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGG 477
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428
L +A EFI+ MP + ALL AC Y DLGKKV+ + +LG + +VLLSN
Sbjct: 478 FLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSN 537
Query: 429 FYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+ G + E AE R K +K PG S I++
Sbjct: 538 IYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 572
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 197/434 (45%), Gaps = 60/434 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ +H H L +D++V +L+ Y + A DA +F MP RD+ +WN +++ Y
Sbjct: 29 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 88
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ +L Q+ + + TLV L A+ L G +VH Y + L
Sbjct: 89 HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 148
Query: 120 N----------MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169
N + ALL MYAKC + L+
Sbjct: 149 NSKSKLTDGVLLGTALLDMYAKCGSL-----LY--------------------------- 176
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV---TPDEEVMVSVLSA 226
AR VFD + ++ V W +++ G V + +A LFK M+ +G+ +P + S L A
Sbjct: 177 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRA 234
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C+SL +L+ G +H + ++ + D +L+ MY+K G +++A+ F + KD V++
Sbjct: 235 CASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSY 294
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG-CQLFRRMG 345
+ ++ G G EA VF +M+ ++P+ AT VS++ AC H + G C G
Sbjct: 295 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCS----HG 350
Query: 346 GVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
V E +C L+D+ ++ G + + + +MP+ D +S+ +++ Y
Sbjct: 351 SVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD-IVSWNTMIAG---YGIHG 406
Query: 404 LGKKVANNMMKLGN 417
LGK+ +++ N
Sbjct: 407 LGKEATALFLEMNN 420
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 148/320 (46%), Gaps = 41/320 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ LHA + K+ + +D+ GNSL+ Y + L A LFD+M +D S++ L+S Y
Sbjct: 243 MGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYV 302
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E ++FK++ + D T+V L AC+ L L +G+ H GL +
Sbjct: 303 QNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS 362
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC +D + ++F+ M S R+IVS N +I GY
Sbjct: 363 ICNALIDMYAKCGRIDLSRQVFNMMPS-RDIVSWNTMIAGY------------------- 402
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+HG K EA LF +M + G PD + +LSACS + G+ H
Sbjct: 403 -------GIHGLGK-----EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGK--H 448
Query: 241 RFILQNN---ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL--- 293
F + + +T ++D+ S+ G L+EA + DV W ++
Sbjct: 449 WFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVY 508
Query: 294 ANYGLGNEALRVFYQMERKG 313
N LG + R+ ++ +G
Sbjct: 509 KNIDLGKKVSRMIQELGPEG 528
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 12/205 (5%)
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M+ V P+ L ACS+L++ GR +HR + + D FV TAL+DMY KC
Sbjct: 1 MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR--VFYQMERKGIKPNEATFVSVL 325
L +A F +D+V W M+ G A++G+ + A+ + QM+ ++PN +T V++L
Sbjct: 61 LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120
Query: 326 AACRHSGLITEGCQ---------LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
G + +G L ++ + L+D+ ++ G L A
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180
Query: 377 IKIMPAEDKFISYKALLSACITYSE 401
MPA ++ +++ AL+ + S
Sbjct: 181 FDAMPARNE-VTWSALIGGFVLCSR 204
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 136/327 (41%), Gaps = 43/327 (13%)
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL 139
+ + T AC+ L H G+ +H +A GL+ L + ALL MY KC + +A
Sbjct: 6 VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65
Query: 140 RLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
+F M + R++V+ N ++ GY M H V
Sbjct: 66 HIFATMPA-RDLVAWNAMLAGYAH----------------------HGMYHHAV------ 96
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL----------QNNIT 249
A L +M + P+ +V++L + L G VH + + ++ +T
Sbjct: 97 -AHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLT 155
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
+ TAL+DMY+KCGSL A F ++ VTW+ +I G +A +F M
Sbjct: 156 DGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAM 215
Query: 310 ERKGIK-PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
+G+ + + S L AC + G QL + V + L+ + ++AG
Sbjct: 216 LAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAK-SGVHADLTAGNSLLSMYAKAG 274
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSA 395
L+ QA M +D +SY AL+S
Sbjct: 275 LIDQAIALFDEMAVKDT-VSYSALVSG 300
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 146/464 (31%), Positives = 255/464 (54%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + + + + +L Y + AR++FD M + V SWN++M Y
Sbjct: 266 VGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYV 325
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + + +F++++ EGI +T++ ACA L L GK VH + ++ L ++
Sbjct: 326 QNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDIS 385
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ MY+KCK VD+A ++F+ + +
Sbjct: 386 VMNSLISMYSKCKR--------------------------------VDIASDIFNNLNGR 413
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
V W +M+ G + + EAL F +M G+ PD MVSV+ A + LS ++ + +H
Sbjct: 414 THVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIH 473
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I+++ + ++ FV TAL+DMYSKCG++ A F + V+TW MI+G +GLG
Sbjct: 474 GLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGR 533
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F +M++ ++PN+ T++SV++AC HSGL+ EG + F+ M Y ++P+++H+ +
Sbjct: 534 AALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAM 593
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG + +A +FI+ MP Y A+L AC + ++G+K A + +L
Sbjct: 594 VDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEG 653
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+VLL+N YA W++VAE R+ M++ +K PG S+++L++
Sbjct: 654 GYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRN 697
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 137/461 (29%), Positives = 222/461 (48%), Gaps = 60/461 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + + ++++ +++ Y + DA +FD+MP RD+ SWNT+++ ++
Sbjct: 166 GKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQ 225
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + L L ++ EG D ITLV + A A + L GK++H YA + G ++N+
Sbjct: 226 NGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNI 285
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL MY+KC GS V+ AR +FD + K
Sbjct: 286 STALADMYSKC-------------GS-------------------VETARLIFDGMDQKT 313
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W SMM G V+ +PE+A+ +F+KM++EG+ P ++ L AC+ L +L+ G+ VH+
Sbjct: 314 VVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHK 373
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F+ Q N+ D V +LI MYSKC ++ A F + + V+W MI G A G +E
Sbjct: 374 FVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSE 433
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAA------CRHS----GLITEGCQLFRRMGGVYRVQ 351
AL F +M+ G+KP+ T VSV+ A RH+ GLI C +
Sbjct: 434 ALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC-----------LD 482
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN- 410
I LVD+ S+ G ++ A + M ++ I++ A++ Y LG+ +
Sbjct: 483 KNIFVTTALVDMYSKCGAIHMARKLFD-MISDRHVITWNAMIDG---YGTHGLGRAALDL 538
Query: 411 -NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450
+ MK G LS A H V E R+ K ++
Sbjct: 539 FDKMKKGAVEPNDITYLSVISACS-HSGLVDEGLRHFKSMK 578
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 119/254 (46%), Gaps = 10/254 (3%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
++ A VF+ I DK L+ +M+ G K E AL +M + V P +L
Sbjct: 97 INEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKV 156
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C ++L+ G+ +H ++ N+ + F T +++MY+KC +++A F + +D+V+W
Sbjct: 157 CGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSW 216
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
T+I G + G +AL + +M+ +G +P+ T V+VL A GL+ G +
Sbjct: 217 NTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHG---- 272
Query: 347 VYRVQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
Y ++ V L D+ S+ G + A M + +S+ +++ + E
Sbjct: 273 -YAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMD-QKTVVSWNSMMDGYVQNGEP 330
Query: 403 DLGKKVANNMMKLG 416
+ V M++ G
Sbjct: 331 EKAIAVFEKMLEEG 344
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 166/462 (35%), Positives = 252/462 (54%), Gaps = 5/462 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGS----WNTLMSIYN 60
+HAHV K ++S+ + +SLI Y AR + + G WN L+S +N
Sbjct: 78 IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHN 137
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
F ++ +A +T V + SAC + + L G VH + G+
Sbjct: 138 RSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQR 197
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ENAL+ MYA+C +MD A LF+ M R++ S +I+G + VD AR++FD + ++
Sbjct: 198 VENALVDMYAECGDMDAAWVLFEGM-QMRSMASWTSVISGLVRSGQVDRARDLFDHMPER 256
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D + W +M+ G V+ + +ALE F+ M V DE MVSV++AC+ L L+ G
Sbjct: 257 DTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWAR 316
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ + I D FV ALIDMYSKCGS+E AL F +D TWT +I GLA G G
Sbjct: 317 IYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGE 376
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EA+ +FY+M R P+E TFV VL AC H+GL+ +G + F M Y + PT+ H+ CL
Sbjct: 377 EAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCL 436
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+D+L RAG L +A + I MP + + LL++C Y ++G+ A +++L +
Sbjct: 437 IDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNS 496
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
AY+LLSN YA W +V R+ + E +K+PG S+I++
Sbjct: 497 TAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEM 538
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 110/271 (40%), Gaps = 18/271 (6%)
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS-----ACSSLSNLQYGRLVHRFILQNN 247
V EEA+ + +M+ G PD S+L ++++ G +H +++
Sbjct: 27 VSGHGAEEAVAGYVRMLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFG 86
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFY----KTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ +A ++LI MY+ G A T V W +I G G +
Sbjct: 87 MESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFELSC 146
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM--GGVYRVQPTIEHFVCLV 361
F M R T+VSVL+AC + G Q+ +R+ GV Q +E+ LV
Sbjct: 147 CSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQ-RVEN--ALV 203
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+ + G + A + M S+ +++S + + D + + ++M + +
Sbjct: 204 DMYAECGDMDAAWVLFEGMQMR-SMASWTSVISGLVRSGQVDRARDLFDHMPE---RDTI 259
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
A+ + + Y G + + E R M+ + R
Sbjct: 260 AWTAMIDGYVQVGRFRDALETFRYMQICKVR 290
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/462 (33%), Positives = 261/462 (56%), Gaps = 3/462 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFY--GRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K +HAH+ +T L D++ + LI F L A + ++ ++ +N L+ +
Sbjct: 34 KIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGCS 93
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + + + G++ D IT L ACA+LE G H A K G E
Sbjct: 94 TSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFY 153
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++N+L+ MYA +++ A +F M R ++VS +I GY ARE+FD + ++
Sbjct: 154 VQNSLVHMYASVGDINAARSVFQRM-CRFDVVSWTCMIAGYHRCGDAKSARELFDRMPER 212
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++V W +M+ G + E+A+E F+ + EGV +E VMV V+S+C+ L L G H
Sbjct: 213 NLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAH 272
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++++N ++ + + TA++DMY++CG++E+A++ F + KDV+ WT +I GLA +G
Sbjct: 273 EYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAE 332
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL F +M +KG P + TF +VL AC H+G++ G ++F M + V+P +EH+ C+
Sbjct: 333 KALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCM 392
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +AE+F+ MP + ++ALL AC + ++G++V ++++ +
Sbjct: 393 VDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYS 452
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA W +V R+ MK+ RK PG S+I++
Sbjct: 453 GHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEI 494
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 91/401 (22%), Positives = 162/401 (40%), Gaps = 104/401 (25%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYG-------------RMALF------------- 34
MG H K + D YV NSL+H Y RM F
Sbjct: 135 MGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYH 194
Query: 35 -----TDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
AR LFD+MP R++ +W+T++S Y + + + F+ L EG+VA++ +V
Sbjct: 195 RCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVG 254
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ S+CA L L G+ H Y + L L + A++ MYA+C +++A+
Sbjct: 255 VISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVM--------- 305
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
VF+++ +KD++ W +++ G E+AL F +M
Sbjct: 306 -----------------------VFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMA 342
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK-TALIDMYSKCGSL 268
+G P + +VL+ACS ++ G + + +++ + ++D+ + G L
Sbjct: 343 KKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKL 402
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
+A K +KPN + ++L AC
Sbjct: 403 RKAEKFVLKMP----------------------------------VKPNAPIWRALLGAC 428
Query: 329 RHSGLITEGCQLFRRMGGV-YRVQPTIE-HFVCLVDLLSRA 367
R I + ++ R+G + +QP H+V L ++ +RA
Sbjct: 429 R----IHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARA 465
>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 160/465 (34%), Positives = 259/465 (55%), Gaps = 5/465 (1%)
Query: 1 MGKGLHAHVTKTALD-SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
MG AH ++ D+ +L+ Y + AR + D MP R+ SW TL++ +
Sbjct: 295 MGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAMPARNEVSWGTLIARH 354
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
D+ E L L+ Q++ +G + + SACA L+ L G +H A K+G L
Sbjct: 355 EQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNL 414
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY-IDMELVDLAREVFDEIV 178
+ ++L+ MY KCK+ A R+F+ + +N V N LI+GY + ++V+ A +F+++
Sbjct: 415 FVSSSLIDMYCKCKQCTYAQRVFNSL-PEKNTVCWNSLISGYSWNGKMVE-AEGLFNKMP 472
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++ V W +M+ G + ++ +AL F M+ G P E + SVL AC++L +L+ GR+
Sbjct: 473 ARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRM 532
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH I++ I + F+ TAL DMY+K G L+ + FY+ K+ +TWT M++GLA G
Sbjct: 533 VHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGF 592
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
E++ +F M GI PNE TF+++L AC H GL+ + F M + + P +H+
Sbjct: 593 AEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQA-HGIPPKSKHYT 651
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VD+L+RAG L +AEE + + +E S+ +LLSAC TY ++G++ A + +L
Sbjct: 652 CMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELEKD 711
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ YVLLSN YA G W + AE R M+ +K G S + L+
Sbjct: 712 NTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQLR 756
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 135/562 (24%), Positives = 226/562 (40%), Gaps = 114/562 (20%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYG-------RMALFTD--------------------- 36
LHAH ++ L +D V ++L+ Y R F D
Sbjct: 102 LHAHAFRSGLTADRSVASNLLTAYAAFTRAADRDQAFRDCVAADAASSFTYDFMVSEHVK 161
Query: 37 ------ARVLFDKMPFRDVGSWNTLMSIY---NDFSDSGEV------------------- 68
AR LF MP + V S+ T++ D+ E+
Sbjct: 162 AGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGF 221
Query: 69 ---------LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL-EYM 118
+F++++ + + +TL+ + AC + V A K L E
Sbjct: 222 VRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKS 281
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + N+L+ +Y + + A R+FD+M R++VS L++ Y D+ + AR V D +
Sbjct: 282 IEVHNSLITLYLRMGDAAAAHRVFDDM-EVRDVVSWTALLDVYADLGDLYGARRVLDAMP 340
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++ V W +++ + EAL+L+ +M+ +G P+ SVLSAC++L +L+ G
Sbjct: 341 ARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTR 400
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKC-------------------------------GS 267
+H L+ + + FV ++LIDMY KC G
Sbjct: 401 IHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGK 460
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+ EA F K ++ V+W TMI G A +AL FY M G P E T SVL A
Sbjct: 461 MVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLA 520
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIMPAE 383
C + + G RM V+ IE + L D+ +++G L + MP E
Sbjct: 521 CANLCSLEMG-----RMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMP-E 574
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443
I++ A++ + + +M++ G +E + L+ +A H V +A
Sbjct: 575 KNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNE-HTFLAILFACS-HCGLVEQAI 632
Query: 444 RNMKELQTRKKPGNSIIDLKHY 465
+ +Q P S KHY
Sbjct: 633 HYFETMQAHGIPPKS----KHY 650
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 62/315 (19%), Positives = 108/315 (34%), Gaps = 97/315 (30%)
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L L G+T D V ++L+A ++ + R + + +F ++
Sbjct: 100 LSLHAHAFRSGLTADRSVASNLLTAYAAFTRAADRDQAFRDCVAAD-AASSFTYDFMVSE 158
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG------------------------ 297
+ K G + A FY K VV++TTM++ L G
Sbjct: 159 HVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMI 218
Query: 298 -------LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL---------ITEGCQLF 341
L +A VF +M ++PN T + V+ AC +G + C LF
Sbjct: 219 SGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLF 278
Query: 342 R--------------RMG---GVYRVQPTIE-----HFVCLVDLLSRAGLLYQAEEFIKI 379
RMG +RV +E + L+D+ + G LY A +
Sbjct: 279 EKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDA 338
Query: 380 MPAEDK----------------------------------FISYKALLSACITYSEFDLG 405
MPA ++ + ++LSAC T + G
Sbjct: 339 MPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGG 398
Query: 406 KKVANNMMKLGNQSH 420
++ N +K+G+ ++
Sbjct: 399 TRIHANALKMGSSTN 413
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 146/424 (34%), Positives = 247/424 (58%), Gaps = 10/424 (2%)
Query: 44 MPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG 103
+P +WNTL+ +++ + + +F +++ G+ D +T L A ++L G
Sbjct: 73 VPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELG 132
Query: 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
VH + K G E ++N+L+ MYA C+++ A ++FDEM R+N+V+ N +++GY
Sbjct: 133 MAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEM-PRKNLVTWNAMLDGYAK 191
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223
+++AREVF+ + +KD+V W S++ G VK + EA+ LF++M +G +E +VS
Sbjct: 192 CGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSA 251
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-- 281
L AC+ L L++GR++HR+I++N + ++T+L+DMY+KCG++ EAL F +
Sbjct: 252 LCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEA 311
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
DV+ W +I GLA +GL EA+ +F +M+ GI P+E T++ +L+ C H GL+ E F
Sbjct: 312 DVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFF 371
Query: 342 ---RRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT 398
R+ G + P +EH+ C+VD LSRAG + +A +F+ MP + ALLS C+
Sbjct: 372 DCLRKHGMI----PKVEHYACMVDALSRAGQVSEAYQFLCQMPVQPTSSMLGALLSGCMK 427
Query: 399 YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNS 458
+ + D+ K V +++L YV LSN YA + W + R M+ +K PG S
Sbjct: 428 HGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFS 487
Query: 459 IIDL 462
I++
Sbjct: 488 FIEV 491
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 159/367 (43%), Gaps = 49/367 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H H+ K+ + D ++ NSLIH Y AR +FD+MP +++ +WN ++ Y
Sbjct: 131 LGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYA 190
Query: 61 DFSD-------------------------------SGEVLILFKQLIFEGIVADKITLVI 89
D GE + LF+++ F+G +A+++TLV
Sbjct: 191 KCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVS 250
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG-SR 148
ACA L L +G+ +H Y + L + ++ +L+ MYAKC + EAL +F
Sbjct: 251 ALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQE 310
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEI----VDKDIVLWRSMMHGCVKAKQPEEALEL 204
+++ N +I G L+ A +F E+ + D + + ++ C EEA
Sbjct: 311 ADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYF 370
Query: 205 FKKMIDEGVTPDEE---VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
F + G+ P E MV LS +S ++F+ Q + + + AL+
Sbjct: 371 FDCLRKHGMIPKVEHYACMVDALSRAGQVSE------AYQFLCQMPVQPTSSMLGALLSG 424
Query: 262 YSKCGSLEEALVT---FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
K G L+ A V + D + + A ++A + MERKG+K +
Sbjct: 425 CMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSP 484
Query: 319 A-TFVSV 324
+F+ V
Sbjct: 485 GFSFIEV 491
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 166/493 (33%), Positives = 256/493 (51%), Gaps = 35/493 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD--ARVLFDKMPFRDVGSWNTLMSIYN 60
K LHA + L+S V LI + T A LF ++ D+ WNT++
Sbjct: 30 KQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRGSA 89
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L+ Q+ G+ DK T + AC +L + G +H K G +
Sbjct: 90 QTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTF 149
Query: 121 MENALLLMYAKCKEM-------------------------------DEALRLFDEMGSRR 149
+ N L+ +A C ++ D A +LFDEM +
Sbjct: 150 VRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLFDEM-PMK 208
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
++VS N++I Y ++ AR++FDE+ KD+V W +M+ G V ++ +EALE+F M
Sbjct: 209 DLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMR 268
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ-DAFVKTALIDMYSKCGSL 268
D G PD+ M+S+LSA + L +L+ G+ +HR I + ALIDMY+KCGS+
Sbjct: 269 DLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSI 328
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
AL F KD +W ++I GLA +G E++ +F +M R +KPNE TFV+VL AC
Sbjct: 329 GNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVAC 388
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
H+G + EG F M V++++P I+H+ C+VD+L RAGLL +A +FI M E I
Sbjct: 389 SHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNAII 448
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
++ LL AC + + +LG++ ++K+ YVLLSN YA +G W V + R+ M +
Sbjct: 449 WRTLLGACRVHGDVELGRRANEQLLKMRKDESGDYVLLSNIYASQGEWDGVQKVRKLMDD 508
Query: 449 LQTRKKPGNSIID 461
+KK G+S+ID
Sbjct: 509 GGVKKKVGHSLID 521
>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
Length = 1984
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 154/449 (34%), Positives = 260/449 (57%), Gaps = 2/449 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ +++ Y +AR +FD+MP R+ SW+ +++ Y+ + E L LF +++
Sbjct: 249 DVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMV 308
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
EG + SA A L L G +H + TK+G++ + + ++L+ +Y KC + D
Sbjct: 309 QEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPD 368
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+ +FD + +N+V N ++ GY ++ E+F+ I +K+ V W +++ G ++ +
Sbjct: 369 DGRLVFD-LILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENE 427
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
Q E+ LE+F ++ G TP++ SVL AC+S+++L G VH I++ I D FV T
Sbjct: 428 QCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGT 487
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IK 315
AL DMY+KCG + + F + K+ ++WT MI+GLA G E+L +F +MER +
Sbjct: 488 ALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVA 547
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
PNE +SVL AC H GL+ +G F M VY ++P +H+ C+VDLLSR+G LY+AEE
Sbjct: 548 PNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEE 607
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
FI+ +P + + ++ ALLS C Y + + ++ A + +L + YVLLSN YA G
Sbjct: 608 FIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGR 667
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDLKH 464
W +V+ R+ M+E +K G S +++++
Sbjct: 668 WIDVSNIRKLMREKGLKKSGGCSWVEVRN 696
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 127/474 (26%), Positives = 220/474 (46%), Gaps = 79/474 (16%)
Query: 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS---------------IYN 60
SD+ V N +I Y + AR+LFD+MP R+ SW+ L+S N
Sbjct: 85 SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERN 144
Query: 61 DFSD--------SG--------EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
F + SG E L LF +L+ G+ + +T + AC L G
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204
Query: 105 TVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM 164
++ K G E+ L++ N+L+ + + E+D A R+FD M +R++VS +++ Y++
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRM-EKRDVVSWTAILDAYVET 263
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
+ AR +FDE+ +++ + W +M+ ++ EEAL+LF KM+ EG P+ L
Sbjct: 264 GDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTL 323
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
SA +SL L G +H + + I +D F+ ++LID+Y KCG ++ + F K+VV
Sbjct: 324 SALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVV 383
Query: 285 TWTTMIEGLANYG---------------------------LGNE----ALRVFYQMERKG 313
W +M+ G + G L NE L VF + G
Sbjct: 384 CWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSG 443
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLY 371
PN++TF SVL AC + +G + G + ++ + FV L D+ ++ G +
Sbjct: 444 QTPNKSTFSSVLCACASIASLDKGMNVH---GKIIKLGIQYDIFVGTALTDMYAKCGDIG 500
Query: 372 QAEEFIKIMPAEDKFISYKALLS----------ACITYSEFDLGKKVANNMMKL 415
+++ + MP +++ IS+ ++ + I + E + +VA N + L
Sbjct: 501 SSKQVFERMPEKNE-ISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELML 553
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 153/322 (47%), Gaps = 25/322 (7%)
Query: 53 NTLMSIYNDFSDSGEVL---ILFKQLIFEGIVADK---ITLVILFSACARLEKLHYGKTV 106
T +S+ FS+ G + +L LI G + + I L+IL+ C + ++
Sbjct: 22 QTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEID----- 76
Query: 107 HCYATKVGLEYM---LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
++ E+ L + N ++ Y + + +A LFDEM RN VS + LI+G +
Sbjct: 77 -----QIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEM-PERNEVSWSALISGLMK 130
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223
V+ + F+ +++V W + + G V+ EAL+LF ++++ GV P++ SV
Sbjct: 131 YGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSV 190
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
+ AC L + G + +++ V +LI + + G ++ A F + + +DV
Sbjct: 191 VRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDV 250
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
V+WT +++ G EA R+F +M + NE ++ +++A SG E +LF +
Sbjct: 251 VSWTAILDAYVETGDLREARRIFDEMPER----NEISWSAMIARYSQSGYAEEALKLFSK 306
Query: 344 MGGVYRVQPTIEHFVCLVDLLS 365
M +P I F C + L+
Sbjct: 307 MVQ-EGFKPNISCFACTLSALA 327
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 137/330 (41%), Gaps = 68/330 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD------------------- 42
G +H HVTK +D D+++G+SLI Y + D R++FD
Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394
Query: 43 ------------KMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+P ++ SW T+++ Y + +VL +F L+ G +K T +
Sbjct: 395 NGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSV 454
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
ACA + L G VH K+G++Y + + AL MYAKC ++ + ++F+ M
Sbjct: 455 LCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMP---- 510
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+K+ + W M+ G ++ E+L LF++M
Sbjct: 511 ----------------------------EKNEISWTVMIQGLAESGFAVESLILFEEMER 542
Query: 211 EG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NNITQDAFVKTALIDMYSKCGSL 268
V P+E +++SVL ACS + G + + I T ++D+ S+ G L
Sbjct: 543 TSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRL 602
Query: 269 EEALVTFYKTDC--KDVVTWTTMIEGLANY 296
EA F +T + W ++ G Y
Sbjct: 603 YEA-EEFIRTIPFQPEANAWAALLSGCKKY 631
>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
Length = 766
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 160/466 (34%), Positives = 244/466 (52%), Gaps = 39/466 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K LD + Y G SL Y R AR +F ++ D+ SWN+L+ N
Sbjct: 270 GEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSWNSLI---NA 326
Query: 62 FSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
FS G E ++LF ++ G+ D IT++ L AC + LH G+++H Y K+GL
Sbjct: 327 FSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVKLGLGGD 386
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + N+LL MYA+C + A+ +VF E
Sbjct: 387 VIVSNSLLSMYARCLDFSSAM--------------------------------DVFHETH 414
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D+D+V W S++ CV+ + E+ +LF + + D + +VLSA + L + +
Sbjct: 415 DRDVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVLSASAELGYFEMVKQ 474
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF-YKTDCKDVVTWTTMIEGLANYG 297
VH + + + DA + LID Y+KCGSL++A F +DV +W+++I G A +G
Sbjct: 475 VHAYAFKVGLVGDAMLSNGLIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFG 534
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F +M G+KPN TFV VL AC GL+ EGC + M Y + PT EH
Sbjct: 535 YAKEALDLFARMRNLGVKPNHVTFVGVLTACSRVGLVDEGCYYYSIMKPEYGIVPTREHC 594
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C++DLL+RAG L +A +F+ MP E I +K LL+A T+++ D+GK+ A ++ +
Sbjct: 595 SCVLDLLARAGRLSEAAKFVDQMPFEPDIIMWKTLLAASRTHNDVDMGKRAAEGVLNIDP 654
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AYVLL N YA G+W E A +++M+ +K PG S I LK
Sbjct: 655 SHSAAYVLLCNIYASSGNWNEFARLKKDMRSSGVQKSPGKSWIKLK 700
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 166/334 (49%), Gaps = 39/334 (11%)
Query: 2 GKGLHAHVTKTA-----LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM 56
G+ +H H+ ++ L + + N LI YGR ARV+FD M R+ SW ++
Sbjct: 61 GRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVI 120
Query: 57 SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
+ + S + + LF ++ G + D+ L AC+ L L G+ VH A K
Sbjct: 121 AAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQVHAQAIKWESG 180
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
L ++NAL+ MY+K + + LF+
Sbjct: 181 SDLIVQNALVTMYSKSGSVGDGFALFER-------------------------------- 208
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT-PDEEVMVSVLSACSSLSN-LQ 234
I DKD++ W S++ G + + +AL++F++MI EGV P+E SV ACS + N L+
Sbjct: 209 IRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLE 268
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
YG +H ++ + ++++ +L DMY++C L+ A FY+ + D+V+W ++I +
Sbjct: 269 YGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFS 328
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
GL +EA+ +F +M G++P+ T +++L AC
Sbjct: 329 AKGLLSEAMVLFSEMRDSGLRPDGITVMALLCAC 362
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/422 (22%), Positives = 195/422 (46%), Gaps = 44/422 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +HA K SD+ V N+L+ Y + D LF+++ +D+ SW ++++
Sbjct: 166 LGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSIIAGLA 225
Query: 61 DFSDSGEVLILFKQLIFEGI-VADKITLVILFSACA-RLEKLHYGKTVHCYATKVGLEYM 118
+ L +F+++I EG+ ++ +F AC+ + L YG+ +H + K L+
Sbjct: 226 QQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRN 285
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+L MYA+C E+D A ++F + S ++VS N LIN + L+
Sbjct: 286 SYAGCSLSDMYARCNELDSARKVFYRIES-PDLVSWNSLINAFSAKGLL----------- 333
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
EA+ LF +M D G+ PD ++++L AC L GR
Sbjct: 334 --------------------SEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRS 373
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++++ + D V +L+ MY++C A+ F++T +DVVTW +++ +
Sbjct: 374 IHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQH 433
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG-VYRVQPTIEHF 357
+ ++F + R + + +VL+A G ++ +++ ++V +
Sbjct: 434 LEDVFKLFSLLHRSMPSLDRISLNNVLSASAELGYF----EMVKQVHAYAFKVGLVGDAM 489
Query: 358 VC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
+ L+D ++ G L A + +IM S+ +L+ + Y++F K+ + ++
Sbjct: 490 LSNGLIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLI---VGYAQFGYAKEALDLFARM 546
Query: 416 GN 417
N
Sbjct: 547 RN 548
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 156/363 (42%), Gaps = 72/363 (19%)
Query: 94 CARLEKLHYGKTVHCY-----ATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
C+RL L G+ VH + A L + + N L+ MY +C D A
Sbjct: 52 CSRLRSLPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCGAPDSA---------- 101
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
R VFD ++D++ V W +++ + + +A+ LF M
Sbjct: 102 ----------------------RVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSM 139
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+ G PD+ + S + ACS L +L GR VH ++ D V+ AL+ MYSK GS+
Sbjct: 140 LRSGTMPDQFALGSAICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSV 199
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNEATFVSVLAA 327
+ F + KD+++W ++I GLA G +AL++F +M +G+ PNE F SV A
Sbjct: 200 GDGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRA 259
Query: 328 CR------------HSGLIT--------EGCQL---FRRMGGV-------YRVQ-PTIEH 356
C H + GC L + R + YR++ P +
Sbjct: 260 CSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVS 319
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIM---PAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
+ L++ S GLL +A M I+ ALL AC+ Y G+ + + ++
Sbjct: 320 WNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLV 379
Query: 414 KLG 416
KLG
Sbjct: 380 KLG 382
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 10/187 (5%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM-PFRDVGSWNTLMSIY 59
M K +HA+ K L D + N LI Y + DA LF+ M RDV SW++L+ Y
Sbjct: 471 MVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGY 530
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-----G 114
F + E L LF ++ G+ + +T V + +AC+R+ + G CY + G
Sbjct: 531 AQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTACSRVGLVDEG----CYYYSIMKPEYG 586
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF 174
+ + +L + A+ + EA + D+M +I+ L+ VD+ +
Sbjct: 587 IVPTREHCSCVLDLLARAGRLSEAAKFVDQMPFEPDIIMWKTLLAASRTHNDVDMGKRAA 646
Query: 175 DEIVDKD 181
+ +++ D
Sbjct: 647 EGVLNID 653
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 153/459 (33%), Positives = 246/459 (53%), Gaps = 1/459 (0%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
H V K I+V N+L+HF+ D+R F +M R+V SWNT++ Y +
Sbjct: 137 HGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEV 196
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
E LF ++ +G++AD TLV L AC+ L G+ VHC+ G + NAL
Sbjct: 197 SEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNAL 256
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
L MY KC ++ A R FD M +N+V+ ++ VD R+ F+++ +++IV W
Sbjct: 257 LDMYGKCGDLWMAHRCFDMM-PIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSW 315
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+M+ V+ + E L+L+ +M G+TPDE + VLSAC +L G+++H ++
Sbjct: 316 NAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRD 375
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
N + +L+DMY++CG ++ A+ F + K+V++W +I LA +G E +
Sbjct: 376 NFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTF 435
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F M P+E TFV +L+AC H GL+ G F M VY V+P +EH+ C+VDLL
Sbjct: 436 FRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLG 495
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
R G L +A IK M + + + ALL AC + ++GK V +++L + +VL
Sbjct: 496 RRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITGGLFVL 555
Query: 426 LSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ N + W ++ + R+ MKE T+K G S I++K+
Sbjct: 556 ICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKN 594
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 117/428 (27%), Positives = 182/428 (42%), Gaps = 71/428 (16%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFY------GRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
+HAH+ V + LI Y R AR LFD++P D +NTL+
Sbjct: 29 IHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRIPEPDRFMYNTLVRA 88
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y++ E L L + ++ GI+ ++ TL + AC + + + H K+G
Sbjct: 89 YSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHALAAHGVVVKLGFVQQ 148
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + NALL +A + ++ R F EM RN+VS N +I GY
Sbjct: 149 IFVANALLHFHASAGSLRDSRRFFGEMAD-RNVVSWNTMIGGY----------------- 190
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+A + EA LF +M +G+ D +VS+L ACSS NL+ GRL
Sbjct: 191 --------------AQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRL 236
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH +L + D + AL+DMY KCG L A F K+VVTWT+M+ A +G
Sbjct: 237 VHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGS 296
Query: 299 GN-------------------------------EALRVFYQMERKGIKPNEATFVSVLAA 327
+ E L ++ +M GI P+E T VL+A
Sbjct: 297 VDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSA 356
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C +G + G + + + P + L+D+ +R G + A MP ++ I
Sbjct: 357 CGQNGDLASGKMIHCYVRDNFN-DPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKN-VI 414
Query: 388 SYKALLSA 395
S+ ++ A
Sbjct: 415 SWNVIIGA 422
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 140/330 (42%), Gaps = 65/330 (19%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALF-------------------------- 34
+G+ +H H+ + D +GN+L+ YG+
Sbjct: 233 VGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQA 292
Query: 35 ----TDA-RVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
DA R F++MP R++ SWN ++S Y E L L+ ++ GI D+ TL
Sbjct: 293 KHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAG 352
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SAC + L GK +HCY + + + N+LL MYA+C ++D A+ LF EM +
Sbjct: 353 VLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEM-PNK 411
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N++S N++I MHG + +E + F+ M+
Sbjct: 412 NVISWNVIIGAL--------------------------AMHG-----RAQETVTFFRTMV 440
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NNITQDAFVKTALIDMYSKCGSL 268
+ +PDE V +LSACS L+ G + + N+ + ++D+ + G L
Sbjct: 441 SDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHL 500
Query: 269 EEALVTFYKTDCK-DVVTWTTMIEGLANYG 297
+A+ K DVV W ++ +G
Sbjct: 501 AKAVNLIKDMSIKPDVVVWGALLGACRIHG 530
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 119/238 (50%), Gaps = 10/238 (4%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
AR +FD I + D ++ +++ + P+EAL L + ++ G+ P+E + VL AC++
Sbjct: 67 ARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTT 126
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+ +++ H +++ Q FV AL+ ++ GSL ++ F + ++VV+W TM
Sbjct: 127 VRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTM 186
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG----CQLFRRMG 345
I G A G +EA +F +M +G+ + T VS+L AC G + G C +
Sbjct: 187 IGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGS 246
Query: 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
V R+ L+D+ + G L+ A +MP ++ +++ ++L A + D
Sbjct: 247 RVDRILGN-----ALLDMYGKCGDLWMAHRCFDMMPIKN-VVTWTSMLCAQAKHGSVD 298
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 31/214 (14%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H +V D + + NSL+ Y R A LF +MP ++V SWN ++
Sbjct: 366 GKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAM 425
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + F+ ++ + D+IT V L SAC+ L G EY
Sbjct: 426 HGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAG------------EYYF-- 471
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
A+ +Y E++ + D +G R ++ LI D + D
Sbjct: 472 -EAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIK---------------DMSIKPD 515
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMID-EGVT 214
+V+W +++ C E + K++++ EG+T
Sbjct: 516 VVVWGALLGACRIHGNVEIGKLVIKQLLELEGIT 549
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 153/462 (33%), Positives = 258/462 (55%), Gaps = 1/462 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA V +T +V +L+ FY L R +FD+M + W ++ Y
Sbjct: 110 GEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVC 169
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + L LF+ + G+ D + + + SAC L L K +HC+ K G+E +
Sbjct: 170 VTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFV 229
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ L+ Y +C +D A R F E +NIV N +I+ ++ ++L +++F + D+D
Sbjct: 230 SSTLISTYGECGSLDYAYRFFQET-PMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRD 288
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W SM+ G + Q +EAL F +M GV+P+ ++S LSAC+S L G +H
Sbjct: 289 VVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHA 348
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ +N++ +D + ++LIDMYSKCG +++A+ F ++ +D+ TWT+++ GLA +G G +
Sbjct: 349 YVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEK 408
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL F +M+ ++P++ T V VL+AC H+GL+ +G F+ M V+ + P +EH+ +V
Sbjct: 409 ALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXMV 468
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R G L +A + I MP E I + A LSAC ++ +LG+ A ++ L +
Sbjct: 469 DLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLXPRDPW 528
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A V+LSN YA E W R+ +K+ +K PG S I++
Sbjct: 529 ARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVN 570
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 144/349 (41%), Gaps = 65/349 (18%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM--SIYNDFSDSGEVLILFKQLIFEG 79
N L +G + ++ +V WNT++ + N L+ + Q + G
Sbjct: 27 NKLPRIHGNTIATVEDPSAASRLDCANVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAG 86
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL 139
+ + T + L A +++ G+ VH + G + ALL Y C + +
Sbjct: 87 LRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGR 146
Query: 140 RLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
++FDEM +VLW ++ V PE
Sbjct: 147 QVFDEM--------------------------------RQPGLVLWTLIIRAYVCVTFPE 174
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
+ALELF+ M + G+TPD + +V+SAC L +L + +H FI ++ I DAFV + LI
Sbjct: 175 KALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLI 234
Query: 260 DMYSKCGSLEEALVTFYKTDCK-------------------------------DVVTWTT 288
Y +CGSL+ A F +T K DVV+W +
Sbjct: 235 STYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNS 294
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
MI G A G EAL F++ME G+ PN T +S L+AC G + G
Sbjct: 295 MIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTG 343
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 115/267 (43%), Gaps = 63/267 (23%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM---- 56
+ K +H + K+ ++ D +V ++LI YG A F + P +++ WNT++
Sbjct: 210 VAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSV 269
Query: 57 ------------------------SIYNDFSDSG---EVLILFKQLIFEGIVADKITLVI 89
S+ F+ G E L F ++ F G+ + +TL+
Sbjct: 270 EHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLS 329
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
SACA L G +H Y K + +++++L+ MY+KC ++D+A+++F+E +RR
Sbjct: 330 TLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEE-STRR 388
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D+ W S++ G + E+AL F KM
Sbjct: 389 -------------------------------DLFTWTSIVCGLAMHGRGEKALHYFSKMK 417
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ V PD+ MV VLSAC+ L G
Sbjct: 418 EAQVQPDDVTMVGVLSACAHAGLLDQG 444
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 101/241 (41%), Gaps = 18/241 (7%)
Query: 181 DIVLWRSMM-----HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
++ +W +M+ +G + P L + + + G+ P+ + +L A S ++
Sbjct: 53 NVFVWNTMIRKQVENGLITRDPP---LLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKE 109
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G VH +++ FV AL+ Y CG + + F + +V WT +I
Sbjct: 110 GEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVC 169
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG--LITEGCQLFRRMGGVYRVQPT 353
+AL +F M G+ P+ +V++AC G + + F G+
Sbjct: 170 VTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGI-----E 224
Query: 354 IEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
++ FV L+ G L A F + P ++ + + ++ + ++ +LGK++ +
Sbjct: 225 VDAFVSSTLISTYGECGSLDYAYRFFQETPMKN-IVVWNTMIHQSVEHNNLELGKQLFQS 283
Query: 412 M 412
M
Sbjct: 284 M 284
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 151/409 (36%), Positives = 236/409 (57%), Gaps = 1/409 (0%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN+ + + + ++LF +L + D T + AC L L G+ +H
Sbjct: 96 WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
KVG L ++N ++ +YA C EM EA LF++M +R++V+ NI+I I + A
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKM-PQRDVVTWNIMIAQLIKQGDHEGAY 214
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
++F + ++++ W SM+ G V+ + +EA+ LF KM + GV +E +V+VL+AC+ L
Sbjct: 215 DLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLG 274
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L G +H + ++ ++ + LIDMY KCG LEEA F + + + VV+W+ MI
Sbjct: 275 ALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIG 334
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
GLA +G EALR+F M + GI+PN TF+ +L AC H GLI+EG + F M Y +
Sbjct: 335 GLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGII 394
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
P IEH+ C+VDLLSRAGLL++A EFI MP + + + ALL AC + ++ ++ +
Sbjct: 395 PQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKH 454
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
+++L + YV+LSN YA G W + A R+ MK+ Q +K PG S I
Sbjct: 455 LLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSI 503
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 154/359 (42%), Gaps = 96/359 (26%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS---- 57
G+ LH V K S++Y+ N ++H Y +AR+LF+KMP RDV +WN +++
Sbjct: 147 GRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIK 206
Query: 58 ------IYNDFS---------------------DSGEVLILFKQLIFEGIVADKITLVIL 90
Y+ FS + E + LF ++ G+ +++T+V +
Sbjct: 207 QGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAV 266
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
+ACA L L G +H Y+ + G + + + N L+ MY KC ++EA ++F+EM R
Sbjct: 267 LAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEM-EERT 325
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+VS + +I G MHG + EEAL LF M
Sbjct: 326 VVSWSAMIGGL--------------------------AMHG-----RAEEALRLFSDMSQ 354
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ P+ + +L ACS + + GR RF ++T+D Y +E
Sbjct: 355 VGIEPNGVTFIGLLHACSHMGLISEGR---RFFA--SMTRD----------YGIIPQIEH 399
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+ M++ L+ GL +EA M +KPN + ++L ACR
Sbjct: 400 ---------------YGCMVDLLSRAGLLHEAHEFILNMP---MKPNGVVWGALLGACR 440
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 127/282 (45%), Gaps = 39/282 (13%)
Query: 170 AREVFD--EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227
A+++F E + +W S + + P +A+ LF ++ V PD SVL AC
Sbjct: 79 AQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRAC 138
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW- 286
+L +L GR++H + + + +++ ++ +Y+ CG + EA + F K +DVVTW
Sbjct: 139 LNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWN 198
Query: 287 ------------------------------TTMIEGLANYGLGNEALRVFYQMERKGIKP 316
T+MI G G EA+ +F +ME G+K
Sbjct: 199 IMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKC 258
Query: 317 NEATFVSVLAACRHSGLITEGCQL--FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
NE T V+VLAAC G + G ++ + G R + L+D+ + G L +A
Sbjct: 259 NEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKR---NVRISNTLIDMYVKCGCLEEAC 315
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ + M E +S+ A++ + + ++ ++M ++G
Sbjct: 316 KVFEEM-EERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVG 356
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 78/182 (42%), Gaps = 1/182 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + + ++ + N+LI Y + +A +F++M R V SW+ ++
Sbjct: 278 LGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLA 337
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYML 119
+ E L LF + GI + +T + L AC+ + + G+ T+ G+ +
Sbjct: 338 MHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQI 397
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ + ++ + EA M + N V L+ + V++A E +++
Sbjct: 398 EHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLE 457
Query: 180 KD 181
D
Sbjct: 458 LD 459
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 151/409 (36%), Positives = 236/409 (57%), Gaps = 1/409 (0%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN+ + + + ++LF +L + D T + AC L L G+ +H
Sbjct: 96 WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
KVG L ++N ++ +YA C EM EA LF++M +R++V+ NI+I I + A
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKM-PQRDVVTWNIMIAQLIKQGDHEGAY 214
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
++F + ++++ W SM+ G V+ + +EA+ LF KM + GV +E +V+VL+AC+ L
Sbjct: 215 DLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLG 274
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L G +H + ++ ++ + LIDMY KCG LEEA F + + + VV+W+ MI
Sbjct: 275 ALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIG 334
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
GLA +G EALR+F M + GI+PN TF+ +L AC H GLI+EG + F M Y +
Sbjct: 335 GLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGII 394
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
P IEH+ C+VDLLSRAGLL++A EFI MP + + + ALL AC + ++ ++ +
Sbjct: 395 PQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKH 454
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
+++L + YV+LSN YA G W + A R+ MK+ Q +K PG S I
Sbjct: 455 LLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSI 503
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 151/359 (42%), Gaps = 96/359 (26%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS---- 57
G+ LH V K S++Y+ N ++H Y +AR+LF+KMP RDV +WN +++
Sbjct: 147 GRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIK 206
Query: 58 ------IYNDFS---------------------DSGEVLILFKQLIFEGIVADKITLVIL 90
Y+ FS + E + LF ++ G+ +++T+V +
Sbjct: 207 QGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAV 266
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
+ACA L L G +H Y+ + G + + + N L+ MY KC ++EA ++F+EM R
Sbjct: 267 LAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER-- 324
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+V W +M+ G + EEAL LF M
Sbjct: 325 ------------------------------TVVSWSAMIGGLAMHGRAEEALRLFSDMSQ 354
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ P+ + +L ACS + + GR RF ++T+D Y +E
Sbjct: 355 VGIEPNGVTFIGLLHACSHMGLISEGR---RFFA--SMTRD----------YGIIPQIEH 399
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+ M++ L+ GL +EA M +KPN + ++L ACR
Sbjct: 400 ---------------YGCMVDLLSRAGLLHEAHEFILNMP---MKPNGVVWGALLGACR 440
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 130/283 (45%), Gaps = 41/283 (14%)
Query: 170 AREVFDEIVDK---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
A+++F E V+K + +W S + + P +A+ LF ++ V PD SVL A
Sbjct: 79 AQQIF-ECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRA 137
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C +L +L GR++H + + + +++ ++ +Y+ CG + EA + F K +DVVTW
Sbjct: 138 CLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTW 197
Query: 287 -------------------------------TTMIEGLANYGLGNEALRVFYQMERKGIK 315
T+MI G G EA+ +F +ME G+K
Sbjct: 198 NIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVK 257
Query: 316 PNEATFVSVLAACRHSGLITEGCQL--FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
NE T V+VLAAC G + G ++ + G R + L+D+ + G L +A
Sbjct: 258 CNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKR---NVRISNTLIDMYVKCGCLEEA 314
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ + M E +S+ A++ + + ++ ++M ++G
Sbjct: 315 CKVFEEM-EERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVG 356
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 78/182 (42%), Gaps = 1/182 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + + ++ + N+LI Y + +A +F++M R V SW+ ++
Sbjct: 278 LGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLA 337
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYML 119
+ E L LF + GI + +T + L AC+ + + G+ T+ G+ +
Sbjct: 338 MHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQI 397
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ + ++ + EA M + N V L+ + V++A E +++
Sbjct: 398 EHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLE 457
Query: 180 KD 181
D
Sbjct: 458 LD 459
>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 160/466 (34%), Positives = 263/466 (56%), Gaps = 9/466 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +HA + K+ L+ + N+L+ YG+ L DA LFD+MP RD SW ++++ YN
Sbjct: 21 AKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQ 80
Query: 62 FSDSGEVLILFKQLIF-EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L +F + + + D L ACA L L GK VH + L ++
Sbjct: 81 AKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVH---ARFVLSPFVD 137
Query: 121 ---MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
++++L+ MYAKC A +FD + + + VS +++GY L D A E+F
Sbjct: 138 DDVVKSSLVDMYAKCGLPSIARSVFDSILVKTS-VSWTAMLSGYARSGLKDEAMELFLRT 196
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSNLQYG 236
+++ W +++ G V++ + +F +M EGV D V+ SV+ AC++L+ L G
Sbjct: 197 PVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLG 256
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+ +H ++ + F+ AL+DMY+KC + A F + +DVV+WT++I G A +
Sbjct: 257 KQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQH 316
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G EAL ++ QM IKPNE TFV ++ AC H+GL+++G +LF+ M YR+ P+++
Sbjct: 317 GRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQL 376
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
F C +DLLSR+G L +AE+ IK MP + ++ ALLSAC + ++G ++A+ ++ L
Sbjct: 377 FTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLN 436
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA G W +++ R+ M +++ ++KPG S IDL
Sbjct: 437 MHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDL 482
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 120/265 (45%), Gaps = 41/265 (15%)
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
C + + K +H K GL + N LL Y KC + +A LFDEM R
Sbjct: 12 CTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQR----- 66
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI-DEG 212
D V W S++ +AK P + L +F M +
Sbjct: 67 ---------------------------DHVSWASILTAYNQAKLPNKTLSIFHYMFTTDR 99
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
+ PD V ++L AC+SL +L+ G+ VH RF+L + D VK++L+DMY+KCG A
Sbjct: 100 LQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDV-VKSSLVDMYAKCGLPSIA 158
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
F K V+WT M+ G A GL +EA+ +F + + N ++ ++++ S
Sbjct: 159 RSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVR----NLYSWTALISGLVQS 214
Query: 332 GLITEGCQLF--RRMGGVYRVQPTI 354
G +GC +F R GV V P +
Sbjct: 215 GYCIDGCYMFIEMRREGVDIVDPLV 239
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 52/95 (54%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V + +S +++ N+L+ Y + + AR +F++M RDV SW +++
Sbjct: 255 LGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAA 314
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
+ E L L+ Q++ I +++T V L AC+
Sbjct: 315 QHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACS 349
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
L C+ + +H I+++ + Q + L+D Y KC L++A F + +D
Sbjct: 9 LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDH 68
Query: 284 VTWTTMIEGLANYGLGNEALRVF-YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
V+W +++ L N+ L +F Y ++P+ + ++L AC + G Q+
Sbjct: 69 VSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHA 128
Query: 343 RMGGVYRVQPTIEHFV---CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
R + + P ++ V LVD+ ++ GL A + + +S+ A+LS
Sbjct: 129 R----FVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTS-VSWTAMLSG 179
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 174/459 (37%), Positives = 253/459 (55%), Gaps = 3/459 (0%)
Query: 3 KGLHAHVTKTALDS-DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +H H L S + Y+ NSLI Y F AR LFD+M R+V S+NT++ +
Sbjct: 147 KQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAK 206
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ +L LF + G+ D T++ L C +L + GK+VH K L +
Sbjct: 207 VGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLIL 266
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL MY KC E+ A ++FD ++ VS N +I GY + ++LA ++F++I +D
Sbjct: 267 YNALLDMYVKCNELKLARKVFDG-PMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRD 325
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W S++ G + LF +M E V PD+ +V+++SA + + L GR +H
Sbjct: 326 IVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHG 385
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ +AF +ALIDMY KCGS+E A V F + KDV TWTTMI G A +G GN+
Sbjct: 386 LAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNK 445
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M+ + KPN+ TFVSVLAAC HSGL+ EG ++F M Y ++P +EH+ CLV
Sbjct: 446 ALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLV 504
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R+G L A I+ MP E + A+LSAC + +L ++ ++KL +
Sbjct: 505 DLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEG 564
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
Y+LLSN YA G W+ R M +K G S +
Sbjct: 565 GYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSV 603
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 64/259 (24%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+GK +HA + K+ S++ + N+L+ Y + AR +FD +D SWNT+++ Y
Sbjct: 247 LGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYA 306
Query: 60 ---------------------------NDFSDSGE---VLILFKQLIFEGIVADKITLVI 89
+ ++ +G+ V LF ++ E + DK+T+V
Sbjct: 307 KVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVN 366
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L SA A + L G+ +H A K+ + +AL+ MY KC ++ A
Sbjct: 367 LISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAF---------- 416
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+F++I +KD+ W +M+ G +ALELF M
Sbjct: 417 ----------------------VIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQ 454
Query: 210 DEGVTPDEEVMVSVLSACS 228
E P++ VSVL+ACS
Sbjct: 455 AE-TKPNDVTFVSVLAACS 472
>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
Length = 698
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 159/455 (34%), Positives = 237/455 (52%), Gaps = 33/455 (7%)
Query: 10 TKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVL 69
+K+ L + +G +L+ Y + AR +FD MP R+ +W+ L+ + S +
Sbjct: 150 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAF 209
Query: 70 ILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
+LFK ++ +G+ ++ ACA L+ L G+ +H K G+ L N+LL M
Sbjct: 210 LLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSM 269
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
YAK L+D A +FDE+ KD V + ++
Sbjct: 270 YAKAG--------------------------------LIDQAIALFDEMAVKDTVSYSAL 297
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ G V+ + EEA +FKKM V PD MVS++ ACS L+ LQ+GR H ++ +
Sbjct: 298 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGL 357
Query: 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
+ + ALIDMY+KCG ++ + F +D+V+W TMI G +GLG EA +F +
Sbjct: 358 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLE 417
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
M G P+ TF+ +L+AC HSGL+ EG F MG Y + P +EH++C+VDLLSR G
Sbjct: 418 MNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGG 477
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428
L +A EFI+ MP + ALL AC Y DLGKKV+ + +LG + +VLLSN
Sbjct: 478 FLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSN 537
Query: 429 FYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+ G + E AE R K +K PG S I++
Sbjct: 538 IYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 572
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 197/434 (45%), Gaps = 60/434 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ +H H L +D++V +L+ Y + A DA +F MP RD+ +WN +++ Y
Sbjct: 29 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 88
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ +L Q+ + + TLV L A+ L G +VH Y + L
Sbjct: 89 HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 148
Query: 120 N----------MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169
N + ALL MYAKC + L+
Sbjct: 149 NSKSKLTDGVLLGTALLDMYAKCGSL-----LY--------------------------- 176
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV---TPDEEVMVSVLSA 226
AR VFD + ++ V W +++ G V + +A LFK M+ +G+ +P + S L A
Sbjct: 177 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRA 234
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C+SL +L+ G +H + ++ + D +L+ MY+K G +++A+ F + KD V++
Sbjct: 235 CASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSY 294
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG-CQLFRRMG 345
+ ++ G G EA VF +M+ ++P+ AT VS++ AC H + G C G
Sbjct: 295 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCS----HG 350
Query: 346 GVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
V E +C L+D+ ++ G + + + +MP+ D +S+ +++ Y
Sbjct: 351 SVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD-IVSWNTMIAG---YGIHG 406
Query: 404 LGKKVANNMMKLGN 417
LGK+ +++ N
Sbjct: 407 LGKEATALFLEMNN 420
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 148/320 (46%), Gaps = 41/320 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ LHA + K+ + +D+ GNSL+ Y + L A LFD+M +D S++ L+S Y
Sbjct: 243 MGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYV 302
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E ++FK++ + D T+V L AC+ L L +G+ H GL +
Sbjct: 303 QNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS 362
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC +D + ++F+ M S R+IVS N +I GY
Sbjct: 363 ICNALIDMYAKCGRIDLSRQVFNMMPS-RDIVSWNTMIAGY------------------- 402
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+HG K EA LF +M + G PD + +LSACS + G+ H
Sbjct: 403 -------GIHGLGK-----EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGK--H 448
Query: 241 RFILQNN---ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL--- 293
F + + +T ++D+ S+ G L+EA + DV W ++
Sbjct: 449 WFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVY 508
Query: 294 ANYGLGNEALRVFYQMERKG 313
N LG + R+ ++ +G
Sbjct: 509 KNIDLGKKVSRMIQELGPEG 528
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 12/205 (5%)
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M+ V P+ L ACS+L++ GR +HR + + D FV TAL+DMY KC
Sbjct: 1 MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR--VFYQMERKGIKPNEATFVSVL 325
L +A F +D+V W M+ G A++G+ + A+ + QM+ ++PN +T V++L
Sbjct: 61 LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120
Query: 326 AACRHSGLITEGCQ---------LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
G + +G L ++ + L+D+ ++ G L A
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180
Query: 377 IKIMPAEDKFISYKALLSACITYSE 401
MPA ++ +++ AL+ + S
Sbjct: 181 FDAMPARNE-VTWSALIGGFVLCSR 204
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 136/327 (41%), Gaps = 43/327 (13%)
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL 139
+ + T AC+ L H G+ +H +A GL+ L + ALL MY KC + +A
Sbjct: 6 VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65
Query: 140 RLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
+F M + R++V+ N ++ GY M H V
Sbjct: 66 HIFATMPA-RDLVAWNAMLAGYAH----------------------HGMYHHAV------ 96
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL----------QNNIT 249
A L +M + P+ +V++L + L G VH + + ++ +T
Sbjct: 97 -AHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLT 155
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
+ TAL+DMY+KCGSL A F ++ VTW+ +I G +A +F M
Sbjct: 156 DGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAM 215
Query: 310 ERKGIK-PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
+G+ + + S L AC + G QL + V + L+ + ++AG
Sbjct: 216 LAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAK-SGVHADLTAGNSLLSMYAKAG 274
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSA 395
L+ QA M +D +SY AL+S
Sbjct: 275 LIDQAIALFDEMAVKDT-VSYSALVSG 300
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 161/495 (32%), Positives = 259/495 (52%), Gaps = 39/495 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGR---MALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
L V K+ + V N+L+ Y + + DAR + D+MP +D +W T++ Y
Sbjct: 181 LQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVR 240
Query: 62 FSDSG-------------------------------EVLILFKQLIFEGIVADKITLVIL 90
D G E LF++++ E + D+ T +
Sbjct: 241 RGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSV 300
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYM----LNMENALLLMYAKCKEMDEALRLFDEMG 146
SACA +GK+VH T++ ++ L + NAL+ +Y+KC + A R+FD M
Sbjct: 301 LSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMK 360
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
S+ ++VS N +++GY++ +D A EVF+E+ K+ + W M+ G V E+AL+LF
Sbjct: 361 SK-DVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFN 419
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
+M E V P + +SAC L +L++G+ +H ++Q ALI MY++CG
Sbjct: 420 RMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCG 479
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+++EA + F D V+W MI L +G G EAL +F +M +GI P+ +F++VL
Sbjct: 480 AVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLT 539
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC HSGL+ EG Q F M + + P +H+ L+DLL RAG + +A + IK MP E
Sbjct: 540 ACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTP 599
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
++A+LS C T + +LG A+ + K+ Q Y+LLSN Y+ G W + A R+ M
Sbjct: 600 SIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLM 659
Query: 447 KELQTRKKPGNSIID 461
++ +K+PG S I+
Sbjct: 660 RDRGVKKEPGCSWIE 674
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH H+ + + GN+LI Y R +A ++F MP D SWN ++S
Sbjct: 449 GKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQ 508
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSAC 94
E L LF +++ EGI D+I+ + + +AC
Sbjct: 509 HGHGREALELFDRMVAEGIYPDRISFLTVLTAC 541
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 161/494 (32%), Positives = 257/494 (52%), Gaps = 65/494 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY---GR-------------------MALFT---- 35
G+ +H HV K + D+YV SLI Y GR AL T
Sbjct: 122 GQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYAS 181
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
A+ +FD++P +DV SWN ++S Y D ++ E L LFK+++ + D+ T+V +
Sbjct: 182 RGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTV 241
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+ + G+ VH + GL L + NAL+ +Y+KC E++ A LF +
Sbjct: 242 VSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLS---- 297
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+KD++ W +M+ G +EAL LF++M+
Sbjct: 298 ----------------------------NKDVISWNTMIGGYTHLNLYKEALLLFQEMLR 329
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ--NNITQDAFVKTALIDMYSKCGSL 268
G P++ M+S+L AC+ L + +GR +H +I + +T + ++T+LIDMY+KCG +
Sbjct: 330 SGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDI 389
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E A F + + MI G A +G N A +F +M + GI+P++ TFV +L+AC
Sbjct: 390 EAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSAC 449
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
HSG++ G ++FR M Y++ P +EH+ C++DLL GL +AEE I M E +
Sbjct: 450 SHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVI 509
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+ +LL AC + +LG+ A ++K+ ++ +YVLLSN YA G W EVA R + +
Sbjct: 510 WCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLND 569
Query: 449 LQTRKKPGNSIIDL 462
+K PG S I++
Sbjct: 570 KGMKKVPGCSSIEI 583
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 137/451 (30%), Positives = 219/451 (48%), Gaps = 45/451 (9%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIYND 61
+HA + KT L + Y + L+ F F A +F+ + ++ WNT+ +
Sbjct: 21 IHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 80
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
SD + L+ +I G++ + T L +CA+L+ G+ +H + K+G E L +
Sbjct: 81 SSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYV 140
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MY K +A ++FD S R++VS LI GY ++ A+++FDEI KD
Sbjct: 141 HTSLISMYVKNGRWKDAHKVFDG-SSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKD 199
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G +EAL+LFK+M+ V PDE MV+V+SAC+ ++Q GR VH
Sbjct: 200 VVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHS 259
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I + + + + ALID+YSKCG +E A F KDV++W TMI G + L E
Sbjct: 260 WIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKE 319
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF----RRMGGVYRVQPTIEHF 357
AL +F +M R G PN+ T +S+L AC G I G + +R+ GV
Sbjct: 320 ALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSL---R 376
Query: 358 VCLVDLLSRAGLLYQAEEFIKIM----------------------PAEDKF--------- 386
L+D+ ++ G + A + M A D F
Sbjct: 377 TSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIE 436
Query: 387 ---ISYKALLSACITYSEFDLGKKVANNMMK 414
I++ LLSAC DLG+++ +M +
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRRIFRSMTQ 467
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 143/302 (47%), Gaps = 38/302 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ + L S++ + N+LI Y + A LF + +DV SWNT++ Y
Sbjct: 253 LGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYT 312
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYM 118
+ E L+LF++++ G + +T++ + ACA+L + +G+ +H Y K G+
Sbjct: 313 HLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNA 372
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ +L+ MYAKC +++ A ++F+ M R + + N +I G+
Sbjct: 373 SSLRTSLIDMYAKCGDIEAAHQVFNSM-HHRTLSACNAMIFGF----------------- 414
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
MHG A A ++F +M G+ PD+ V +LSACS L GR
Sbjct: 415 ---------AMHGRANA-----AFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRR 460
Query: 239 VHRFILQN-NITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLAN 295
+ R + QN IT +ID+ G +EA ++ + D V W ++++
Sbjct: 461 IFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTME-PDGVIWCSLLKACKM 519
Query: 296 YG 297
+G
Sbjct: 520 HG 521
>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 170/502 (33%), Positives = 258/502 (51%), Gaps = 40/502 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN- 60
G+ LHA + +D V +SL H Y + DAR LFD+MP RDV W+ +++ Y+
Sbjct: 123 GQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSR 182
Query: 61 -------------------------------DFSDSG---EVLILFKQLIFEGIVADKIT 86
F ++G E + +F+ ++ +G D T
Sbjct: 183 LGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGST 242
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+ + A LE + G VH Y K GL + +A+L MY KC + E R+FDE+
Sbjct: 243 VSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEV- 301
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDK----DIVLWRSMMHGCVKAKQPEEAL 202
I SLN + G +VD A EVF++ D+ ++V W S++ C + + EAL
Sbjct: 302 EEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEAL 361
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
ELF+ M GV P+ + S++ AC ++S L +G+ +H F L+ I D +V +ALIDMY
Sbjct: 362 ELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMY 421
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
+KCG ++ A F K ++V+W +++G A +G E + +F+ M + G KP+ TF
Sbjct: 422 AKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFT 481
Query: 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382
VL+AC +GL EG + + M + ++P +EH+ CLV LLSR G L +A IK MP
Sbjct: 482 CVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPF 541
Query: 383 EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442
E + ALLS+C ++ LG+ A + L + Y+LLSN YA +G W E
Sbjct: 542 EPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRI 601
Query: 443 RRNMKELQTRKKPGNSIIDLKH 464
R MK RK PG S I++ H
Sbjct: 602 REVMKSKGLRKNPGYSWIEVGH 623
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 121/461 (26%), Positives = 215/461 (46%), Gaps = 19/461 (4%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARV---LFDKMPFRDVGSWNTLMSIYNDF 62
HA + + L SD + SL+ FY + ++ L +P + S+++L+ +
Sbjct: 23 HALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARS 82
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
VL F L ++ D L +CA L L G+ +H +A G +
Sbjct: 83 HHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVA 142
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI----V 178
++L MY KC + +A +LFD M R++V + +I GY + LV+ A+E+F E+ V
Sbjct: 143 SSLTHMYLKCDRILDARKLFDRM-PDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGV 201
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+ ++V W M+ G +EA+ +F+ M+ +G PD + VL A L ++ G
Sbjct: 202 EPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQ 261
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH ++++ + D FV +A++DMY KCG ++E F + + ++ + + GL+ G+
Sbjct: 262 VHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGM 321
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
+ AL VF + + + ++ N T+ S++A+C +G E +LFR M Y V+P
Sbjct: 322 VDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQA-YGVEPNAVTIP 380
Query: 359 CLVDLLSRAGLLYQAEEF----IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
L+ L +E ++ +D ++ AL+ L ++ + M
Sbjct: 381 SLIPACGNISALMHGKEIHCFSLRRGIFDDVYVG-SALIDMYAKCGRIQLARRCFDKMSA 439
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKP 455
L S A + YA+ G E E M LQ+ +KP
Sbjct: 440 LNLVSWNAVM---KGYAMHGKAKETMEMFHMM--LQSGQKP 475
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 132/307 (42%), Gaps = 68/307 (22%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWN------- 53
+G +H +V K L SD +V ++++ YG+ + +FD++ ++GS N
Sbjct: 258 VGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLS 317
Query: 54 ------TLMSIYNDFSDSG----------------------EVLILFKQLIFEGIVADKI 85
T + ++N F D E L LF+ + G+ + +
Sbjct: 318 RNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAV 377
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T+ L AC + L +GK +HC++ + G+ + + +AL+ MYAKC + A R FD+M
Sbjct: 378 TIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKM 437
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
S N+VS N ++ GY MHG KAK E +E+F
Sbjct: 438 -SALNLVSWNAVMKGYA--------------------------MHG--KAK---ETMEMF 465
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSK 264
M+ G PD VLSAC+ + G R + ++ I L+ + S+
Sbjct: 466 HMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSR 525
Query: 265 CGSLEEA 271
G LEEA
Sbjct: 526 VGKLEEA 532
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 157/451 (34%), Positives = 249/451 (55%), Gaps = 3/451 (0%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILF- 72
+ + VGN+L+H Y DAR LFD+M RDV SW TL+ Y E +F
Sbjct: 162 IGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFC 221
Query: 73 KQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKC 132
+ ++ G +++TLV SA ++ L G+ VH + G+ +N+ENAL+ M+ KC
Sbjct: 222 RMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKC 281
Query: 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC 192
+ A +FD M +++ S +++ Y ++ A ++F EI +++ V W M+
Sbjct: 282 GCVASAKEIFDGM-PIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAY 340
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH-RFILQNNITQD 251
+A PEEA+ +F MI GV P + +VSVLSAC+ L L GR ++ +I+ + +
Sbjct: 341 SQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELT 400
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
+ A IDM++KCG + A F + K+VV+W TMI A +G EAL +F + +
Sbjct: 401 VNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKA 460
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY 371
GI P+E T++ VL+AC HSGL++EG F+ M VY ++P EH+ C++DLL + GLL
Sbjct: 461 IGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLE 520
Query: 372 QAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431
+A E + MP + ALL+AC + ++GK A+ ++ L YVL+S YA
Sbjct: 521 EAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLVGLDPSDSGIYVLMSQIYA 580
Query: 432 LEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ W +V R M++ +K PG S I++
Sbjct: 581 SKSKWGQVKMIRTVMRDRGVKKNPGCSSIEV 611
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 134/305 (43%), Gaps = 65/305 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G+ +H V ++ + + + N+L+ +G+ A+ +FD MP +DV SW +++S Y
Sbjct: 251 LGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYA 310
Query: 60 --NDFSDSG----------------------------EVLILFKQLIFEGIVADKITLVI 89
D ++G E + +F +I G+ TLV
Sbjct: 311 KCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVS 370
Query: 90 LFSACARLEKLHYGKTVH-CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ SACA+L L G+ ++ Y +E +N+ NA + M+AKC ++ A RLF M
Sbjct: 371 VLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNM-ED 429
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+N+VS N +I + +HG Q EEAL LF+K
Sbjct: 430 KNVVSWNTMIVAH--------------------------ALHG-----QSEEALHLFQKF 458
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI-LQNNITQDAFVKTALIDMYSKCGS 267
G+ PDE + VLSACS + GR + + + I A +ID+ K G
Sbjct: 459 KAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGL 518
Query: 268 LEEAL 272
LEEA
Sbjct: 519 LEEAF 523
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 114/213 (53%), Gaps = 10/213 (4%)
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
+MM G ++A +P AL LF++++ + + D +V + A ++ S+ +H +
Sbjct: 102 TMMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAATTSSS--PAEAIHCVAFKR 159
Query: 247 N-ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
I Q V AL+ MY+ SL +A F + +DVV+WTT+++G A GL +EA RV
Sbjct: 160 GFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRV 219
Query: 306 FYQMERKGIK-PNEATFVSVLAACRHSGLITEGCQLFRRM--GGVYRVQPTIEHFVCLVD 362
F +M G PNE T V+ +A GL+ G + + + GV R+ +E+ LVD
Sbjct: 220 FCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGV-RMSVNLEN--ALVD 276
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ + G + A+E MP +D + S+ +++SA
Sbjct: 277 MFGKCGCVASAKEIFDGMPIKDVY-SWTSMVSA 308
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 160/492 (32%), Positives = 265/492 (53%), Gaps = 32/492 (6%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG--RMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K +HA +T D YV +L+ Y + A +F+ +P +V +N ++
Sbjct: 47 KQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCL 106
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ + + + +++ +K T LF AC E G VH + K GL ++
Sbjct: 107 QNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVH 166
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSR------------------------------RN 150
+ +A + MY E++ A R+ E G+ +N
Sbjct: 167 IRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKN 226
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+ S N++++G +++ ARE+F+E+ +K+ + W +M+ G +K +EALE+F M
Sbjct: 227 VGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQR 286
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
E + P + V+ SVL+AC++L L GR +H ++ N+ + DA + TAL+DMY+KCG L+
Sbjct: 287 EEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDM 346
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F K + K+V TW MI GL +G +A+ +F++M+++ +PN T + VL+AC H
Sbjct: 347 AWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAH 406
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
SG++ EG ++F M VY ++P +EH+ C+VDLL RAGLL +AEE + MP E +
Sbjct: 407 SGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWG 466
Query: 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450
ALL AC + + +LG++V +++L Q+ Y LLSN YA G W +VA R+ MKE
Sbjct: 467 ALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERG 526
Query: 451 TRKKPGNSIIDL 462
+ G S+ID
Sbjct: 527 VKTSTGISMIDF 538
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA+V + D +G +L+ Y + A +F+KM ++V +WN ++
Sbjct: 312 GRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGM 371
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
+ + + LF ++ + + ITL+ + SACA
Sbjct: 372 HGRAEDAIELFFKMQKQKFRPNGITLLGVLSACA 405
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 174/459 (37%), Positives = 253/459 (55%), Gaps = 3/459 (0%)
Query: 3 KGLHAHVTKTALDS-DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +H H L S + Y+ NSLI Y F AR LFD+M R+V S+NT++ +
Sbjct: 82 KQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAK 141
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ +L LF + G+ D T++ L C +L + GK+VH K L +
Sbjct: 142 VGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLIL 201
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL MY KC E+ A ++FD ++ VS N +I GY + ++LA ++F++I +D
Sbjct: 202 YNALLDMYVKCNELKLARKVFDG-PMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRD 260
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W S++ G + LF +M E V PD+ +V+++SA + + L GR +H
Sbjct: 261 IVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHG 320
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ +AF +ALIDMY KCGS+E A V F + KDV TWTTMI G A +G GN+
Sbjct: 321 LAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNK 380
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M+ + KPN+ TFVSVLAAC HSGL+ EG ++F M Y ++P +EH+ CLV
Sbjct: 381 ALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLV 439
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R+G L A I+ MP E + A+LSAC + +L ++ ++KL +
Sbjct: 440 DLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEG 499
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
Y+LLSN YA G W+ R M +K G S +
Sbjct: 500 GYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSV 538
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 64/259 (24%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+GK +HA + K+ S++ + N+L+ Y + AR +FD +D SWNT+++ Y
Sbjct: 182 LGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYA 241
Query: 60 ---------------------------NDFSDSGE---VLILFKQLIFEGIVADKITLVI 89
+ ++ +G+ V LF ++ E + DK+T+V
Sbjct: 242 KVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVN 301
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L SA A + L G+ +H A K+ + +AL+ MY KC ++ A
Sbjct: 302 LISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFV--------- 352
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+F++I +KD+ W +M+ G +ALELF M
Sbjct: 353 -----------------------IFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQ 389
Query: 210 DEGVTPDEEVMVSVLSACS 228
E P++ VSVL+ACS
Sbjct: 390 AE-TKPNDVTFVSVLAACS 407
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 242/465 (52%), Gaps = 35/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSI 58
+G HA K +L SD +V N+LI+ Y AR++ D P DV SWNT+++
Sbjct: 23 VGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAG 82
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y + L F Q+ E + D++TL+ + ACAR + G H G E
Sbjct: 83 YIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEIN 142
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ ++L+ MYAKC ++EA R+F+ M R
Sbjct: 143 CYIGSSLVSMYAKCGMVEEARRVFNRMPER------------------------------ 172
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++V W SM+ GC ++ + +EA++LF+ M GV D+ + +V+S+C + L GR
Sbjct: 173 --NVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRY 230
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H + + + ++ VK +LIDMYSKCG + +A F+ +DV TWT MI G A GL
Sbjct: 231 LHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGL 290
Query: 299 GNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F QME + + PNE F+ VL AC H GL+ +G F RM VY + P IEH+
Sbjct: 291 CVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHY 350
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RA LL +AE+FIK MP + +++LL AC + L + A + +L
Sbjct: 351 GCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEP 410
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ +VLLSN YA W +V R M +T KKPG S I++
Sbjct: 411 KRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEV 455
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 8/216 (3%)
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+T D + +SA + + +L G H L+ ++ D+FV ALI+MYS C A
Sbjct: 1 MTLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASAR 60
Query: 273 VTFYKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
+ DVV+W T+I G G+ N+AL+ F+QM ++ ++ +E T ++VL AC
Sbjct: 61 LVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACAR 120
Query: 331 SGLITEG--CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
+G + G C + G + + I LV + ++ G++ +A MP E +
Sbjct: 121 TGAMKVGSLCHALVVLNG-FEINCYIGS--SLVSMYAKCGMVEEARRVFNRMP-ERNVVC 176
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
+ ++++ C F + +M G ++ +A +
Sbjct: 177 WTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATI 212
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 242/465 (52%), Gaps = 35/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSI 58
+G HA K +L SD +V N+LI+ Y AR++ D P DV SWNT+++
Sbjct: 111 VGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAG 170
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y + L F Q+ E + D++TL+ + ACAR + G H G E
Sbjct: 171 YIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEIN 230
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ ++L+ MYAKC ++EA R+F+ M R
Sbjct: 231 CYIGSSLVSMYAKCGMVEEARRVFNRMPER------------------------------ 260
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++V W SM+ GC ++ + +EA++LF+ M GV D+ + +V+S+C + L GR
Sbjct: 261 --NVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRY 318
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H + + + ++ VK +LIDMYSKCG + +A F+ +DV TWT MI G A GL
Sbjct: 319 LHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGL 378
Query: 299 GNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F QME + + PNE F+ VL AC H GL+ +G F RM VY + P IEH+
Sbjct: 379 CVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHY 438
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RA LL +AE+FIK MP + +++LL AC + L + A + +L
Sbjct: 439 GCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEP 498
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ +VLLSN YA W +V R M +T KKPG S I++
Sbjct: 499 KRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEV 543
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 8/205 (3%)
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD--CK 281
+SA + + +L G H L+ ++ D+FV ALI+MYS C A +
Sbjct: 100 ISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWAS 159
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG--CQ 339
DVV+W T+I G G+ N+AL+ F+QM ++ ++ +E T ++VL AC +G + G C
Sbjct: 160 DVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCH 219
Query: 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
+ G + + I LV + ++ G++ +A MP E + + ++++ C
Sbjct: 220 ALVVLNG-FEINCYIGS--SLVSMYAKCGMVEEARRVFNRMP-ERNVVCWTSMIAGCTQS 275
Query: 400 SEFDLGKKVANNMMKLGNQSHEAYV 424
F + +M G ++ +A +
Sbjct: 276 GRFKEAVDLFRDMQIAGVKADDATI 300
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 159/455 (34%), Positives = 237/455 (52%), Gaps = 33/455 (7%)
Query: 10 TKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVL 69
+K+ L + +G +L+ Y + AR +FD MP R+ +W+ L+ + S +
Sbjct: 265 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAF 324
Query: 70 ILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
+LFK ++ +G+ ++ ACA L+ L G+ +H K G+ L N+LL M
Sbjct: 325 LLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSM 384
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
YAK L+D A +FDE+ KD V + ++
Sbjct: 385 YAKAG--------------------------------LIDQAIALFDEMAVKDTVSYSAL 412
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ G V+ + EEA +FKKM V PD MVS++ ACS L+ LQ+GR H ++ +
Sbjct: 413 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGL 472
Query: 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
+ + ALIDMY+KCG ++ + F +D+V+W TMI G +GLG EA +F +
Sbjct: 473 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLE 532
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
M G P+ TF+ +L+AC HSGL+ EG F MG Y + P +EH++C+VDLLSR G
Sbjct: 533 MNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGG 592
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428
L +A EFI+ MP + ALL AC Y DLGKKV+ + +LG + +VLLSN
Sbjct: 593 FLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSN 652
Query: 429 FYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+ G + E AE R K +K PG S I++
Sbjct: 653 IYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 687
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 197/434 (45%), Gaps = 60/434 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ +H H L +D++V +L+ Y + A DA +F MP RD+ +WN +++ Y
Sbjct: 144 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 203
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ +L Q+ + + TLV L A+ L G +VH Y + L
Sbjct: 204 HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 263
Query: 120 N----------MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169
N + ALL MYAKC + L+
Sbjct: 264 NSKSKLTDGVLLGTALLDMYAKCGSL-----LY--------------------------- 291
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV---TPDEEVMVSVLSA 226
AR VFD + ++ V W +++ G V + +A LFK M+ +G+ +P + S L A
Sbjct: 292 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRA 349
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C+SL +L+ G +H + ++ + D +L+ MY+K G +++A+ F + KD V++
Sbjct: 350 CASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSY 409
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG-CQLFRRMG 345
+ ++ G G EA VF +M+ ++P+ AT VS++ AC H + G C G
Sbjct: 410 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCS----HG 465
Query: 346 GVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
V E +C L+D+ ++ G + + + +MP+ D +S+ +++ Y
Sbjct: 466 SVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD-IVSWNTMIAG---YGIHG 521
Query: 404 LGKKVANNMMKLGN 417
LGK+ +++ N
Sbjct: 522 LGKEATALFLEMNN 535
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 148/320 (46%), Gaps = 41/320 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ LHA + K+ + +D+ GNSL+ Y + L A LFD+M +D S++ L+S Y
Sbjct: 358 MGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYV 417
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E ++FK++ + D T+V L AC+ L L +G+ H GL +
Sbjct: 418 QNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS 477
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC +D + ++F+ M S R+IVS N +I GY
Sbjct: 478 ICNALIDMYAKCGRIDLSRQVFNMMPS-RDIVSWNTMIAGY------------------- 517
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+HG K EA LF +M + G PD + +LSACS + G+ H
Sbjct: 518 -------GIHGLGK-----EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGK--H 563
Query: 241 RFILQNN---ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL--- 293
F + + +T ++D+ S+ G L+EA + DV W ++
Sbjct: 564 WFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVY 623
Query: 294 ANYGLGNEALRVFYQMERKG 313
N LG + R+ ++ +G
Sbjct: 624 KNIDLGKKVSRMIQELGPEG 643
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 96/375 (25%), Positives = 162/375 (43%), Gaps = 45/375 (12%)
Query: 34 FTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEV--LILFKQLIFEGIVADKITLVILF 91
+ A LFD++P DV ++N L+ Y+ S + L L+++++ + + T
Sbjct: 73 LSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFAL 132
Query: 92 SACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNI 151
AC+ L H G+ +H +A GL+ L + ALL MY KC + +A +F M + R++
Sbjct: 133 KACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPA-RDL 191
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
V+ N ++ GY M H V A L +M
Sbjct: 192 VAWNAMLAGYAH----------------------HGMYHHAV-------AHLLSMQMQMH 222
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL----------QNNITQDAFVKTALIDM 261
+ P+ +V++L + L G VH + + ++ +T + TAL+DM
Sbjct: 223 RLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDM 282
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK-PNEAT 320
Y+KCGSL A F ++ VTW+ +I G +A +F M +G+ + +
Sbjct: 283 YAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS 342
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
S L AC + G QL + V + L+ + ++AGL+ QA M
Sbjct: 343 IASALRACASLDHLRMGEQLHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAIALFDEM 401
Query: 381 PAEDKFISYKALLSA 395
+D +SY AL+S
Sbjct: 402 AVKDT-VSYSALVSG 415
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 115/246 (46%), Gaps = 16/246 (6%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA---LELFKKMIDEGVTPDEEVMVSVLSA 226
A +FD+I D+ + ++ + P A L L+++M+ V P+ L A
Sbjct: 76 AHHLFDQIPSPDVRTYNDLIRA-YSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKA 134
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
CS+L++ GR +HR + + D FV TAL+DMY KC L +A F +D+V W
Sbjct: 135 CSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAW 194
Query: 287 TTMIEGLANYGLGNEALR--VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ----- 339
M+ G A++G+ + A+ + QM+ ++PN +T V++L G + +G
Sbjct: 195 NAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYC 254
Query: 340 ----LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
L ++ + L+D+ ++ G L A MPA ++ +++ AL+
Sbjct: 255 IRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE-VTWSALIGG 313
Query: 396 CITYSE 401
+ S
Sbjct: 314 FVLCSR 319
>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 599
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 159/450 (35%), Positives = 258/450 (57%), Gaps = 4/450 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
++Y N+++ + + + ARV+FD MP RDV SWNT++ Y + E L FK+L
Sbjct: 112 NLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELR 171
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
GI ++ + L +AC + +L + H G + + +++ YAKC +M+
Sbjct: 172 RSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQME 231
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A R FDEM + ++I LI+GY + ++ A ++F E+ +K+ V W +++ G V+
Sbjct: 232 SAKRCFDEM-TVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQG 290
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
+ AL+LF+KMI V P++ S L A +S+++L++G+ +H ++++ N+ +A V +
Sbjct: 291 SGDLALDLFRKMIAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTS 350
Query: 257 ALIDMYSKCGSLEEALVTFYKT-DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
+LIDMYSK GSLE + F D +D V W TMI LA +GLG++AL++ M + +
Sbjct: 351 SLIDMYSKSGSLEASERVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVH 410
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
PN T V +L AC HSGL+ EG + F M + + P EH+ CL+DLL RAG +
Sbjct: 411 PNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMS 470
Query: 376 FIKIMPAE-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
I+ MP E DK I + A+L C + +LGKK A ++KL +S Y+LLS+ YA G
Sbjct: 471 KIEEMPFEPDKHI-WNAILGVCRIHGNEELGKKAAEELIKLDPESSAPYILLSSIYADHG 529
Query: 435 HWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
W V + R MK+ + K+ S I++++
Sbjct: 530 KWELVEKLRGIMKKRRVNKEKAVSWIEIEN 559
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/394 (25%), Positives = 176/394 (44%), Gaps = 37/394 (9%)
Query: 47 RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV 106
R + +L+S + ++ + + + L +GI L L C + L GK +
Sbjct: 9 RPICVARSLLSRHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWI 68
Query: 107 HCYATKVGLEYMLNM-ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME 165
H + G + + N L+ MY KC + +A ++FD+M RN+ S N +++G++
Sbjct: 69 HRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQM-HLRNLYSWNNMVSGFVKSG 127
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS 225
++ AR VFD + ++D+V W +M+ G + EAL FK++ G+ +E +L+
Sbjct: 128 MLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLT 187
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
AC LQ + H +L + + ++ID Y+KCG +E A F + KD+
Sbjct: 188 ACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHI 247
Query: 286 WTTMIEG----------------------------LANY---GLGNEALRVFYQMERKGI 314
WTT+I G +A Y G G+ AL +F +M +
Sbjct: 248 WTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRV 307
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
KP + TF S L A + G Q+ M V+P L+D+ S++G L +E
Sbjct: 308 KPEQFTFSSCLCASASIASLRHGKQIHGYMIRT-NVRPNAIVTSSLIDMYSKSGSLEASE 366
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
+I + + + ++SA ++ LG K
Sbjct: 367 RVFRICYDKQDCVLWNTMISA---LAQHGLGHKA 397
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 117/297 (39%), Gaps = 63/297 (21%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD- 64
H V S++ + S+I Y + A+ FD+M +D+ W TL+S Y D
Sbjct: 202 HGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDM 261
Query: 65 -----------------------------SGEV-LILFKQLIFEGIVADKITLVILFSAC 94
SG++ L LF+++I + ++ T A
Sbjct: 262 EAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTFSSCLCAS 321
Query: 95 ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSL 154
A + L +GK +H Y + + + ++L+ MY+K ++ + R+F
Sbjct: 322 ASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVF------------ 369
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
R +D+ +D VLW +M+ + +AL++ MI V
Sbjct: 370 ----------------RICYDK---QDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVH 410
Query: 215 PDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
P+ +V +L+ACS ++ G R +Q+ I D LID+ + G +E
Sbjct: 411 PNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKE 467
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 168/496 (33%), Positives = 266/496 (53%), Gaps = 39/496 (7%)
Query: 5 LHAHVTKTALDSDIYV-GNSLIHF--YGRMALFTDARVLFDKMPF-RDVGSWNTLMSIYN 60
LH + KT+L + Y G L+ F + + A+ LFD + R+ + T++ Y
Sbjct: 50 LHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNYAQKLFDTVDIPRNSFMYTTMIKAYA 109
Query: 61 DFSDSGEVLILFKQLIFEG--IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+F + E + +++ + + + T +FSAC++ + GK H K E+
Sbjct: 110 NFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFG 169
Query: 119 LNMENALLLMYAKCKE--------------------------------MDEALRLFDEMG 146
++ N+LL Y K E +DEA RLFDEM
Sbjct: 170 VHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEM- 228
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
R++VS I++ GY D + A +FDE+ +++V W +++ G ++ +ALELFK
Sbjct: 229 PERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFK 288
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
+M V DE ++ ++LSAC+ L L GR +H +I ++ I DA + TALIDMYSKCG
Sbjct: 289 EMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCG 348
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
++ A F +T K V W++MI GLA + G +A+ +F +M GI+P+E T++++LA
Sbjct: 349 RIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILA 408
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC HSGL+ G Q+F RM + +P ++H+ C+VDLL RAGLL+ A ++ MP +
Sbjct: 409 ACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADP 468
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
++ALLSAC + +LG++V ++K+ Q+ YVL SN YA W + RR M
Sbjct: 469 AIWRALLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDISGKLRREM 528
Query: 447 KELQTRKKPGNSIIDL 462
K +K PG S I+L
Sbjct: 529 KVRGMQKNPGCSSIEL 544
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/394 (24%), Positives = 156/394 (39%), Gaps = 101/394 (25%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMAL---------------------------- 33
GK HA + K + ++ NSL+ FYG++
Sbjct: 154 GKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYV 213
Query: 34 ----FTDARVLFDKMPFRDVGSWNTLMSIYND---FSDS--------------------- 65
+AR LFD+MP RDV SW ++ Y D S++
Sbjct: 214 KSGDLDEARRLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKG 273
Query: 66 -------GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ L LFK++ + D++ + L SACARL L G+ +H Y K G++
Sbjct: 274 YIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVD 333
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ AL+ MY+KC +D A ++F E G
Sbjct: 334 AHLSTALIDMYSKCGRIDMAWKVFQETG-------------------------------- 361
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
DK + +W SM+ G E+A+ELF KMI+ G+ P E +++L+AC+ + G
Sbjct: 362 DKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQ 421
Query: 239 VHRFILQNNITQDAFVKTA-LIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLA-- 294
+ +++N + ++D+ + G L +A K D W ++
Sbjct: 422 IFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLH 481
Query: 295 -NYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
N LG + R+ +ME + N F +V AA
Sbjct: 482 RNVELGEQVGRILIKMEPQN-DMNYVLFSNVYAA 514
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 11/136 (8%)
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI---DMYSKCGSLEEA 271
PD + S+L C + +L +H +++ ++ ++ + L+ + GSL A
Sbjct: 31 PDHAI--SLLQNCKNPKDLIQ---LHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNYA 85
Query: 272 LVTFYKTDC-KDVVTWTTMIEGLANYGLGNEALRVFYQM--ERKGIKPNEATFVSVLAAC 328
F D ++ +TTMI+ AN+G EA + +M +++ + PN+ TF V +AC
Sbjct: 86 QKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSAC 145
Query: 329 RHSGLITEGCQLFRRM 344
+ EG Q +M
Sbjct: 146 SKFNGVFEGKQAHAQM 161
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 161/465 (34%), Positives = 249/465 (53%), Gaps = 10/465 (2%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LHA + +D D V L Y A L + P + + + ++
Sbjct: 49 LHAAAVRAGVDQDKAVDFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGL 108
Query: 65 SGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
L L +++ G++ TL AC L G+ +H YA K+ L +
Sbjct: 109 HHAALALLSEMLLSHGLLPTAHTLSASLPACG---GLAVGRALHGYAVKLALSGEPYVAT 165
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
ALL MYA+ + A LFD M ++VS+ ++ Y M L+D AR +FD + KD++
Sbjct: 166 ALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLI 225
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W +MM G + +P EAL LF++M+ GV PDE +V LSA + L + GR +H F+
Sbjct: 226 CWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFV 285
Query: 244 LQNN---ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDVVTWTTMIEGLANYGL 298
++ + +A V TALIDMY KCGSLE+A+ F +D+V W M+ G A +G
Sbjct: 286 TNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGH 345
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EAL F Q+ +G+ P + TF+ VL AC HSGL+ EG +LFR M Y ++P +EH+
Sbjct: 346 SREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYG 405
Query: 359 CLVDLLSRAGLLYQAEEFIKIMP-AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RAG + +A E ++ M + + + +LL+AC + +LG+++A++++ G
Sbjct: 406 CMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGL 465
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ YVLLSN YA G+W EV R M+ +K+PG S +++
Sbjct: 466 ANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEV 510
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 142/329 (43%), Gaps = 70/329 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHF--------------------------------Y 28
+G+ LH + K AL + YV +L+ Y
Sbjct: 144 VGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCY 203
Query: 29 GRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLV 88
+M L DAR LFD +P +D+ WN +M Y E L LF++++ G+ D++++V
Sbjct: 204 AKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVV 263
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYM-LNME--NALLLMYAKCKEMDEALRLFDEM 145
+ SA A+L G+ +H + T + LN AL+ MY KC +++A+ +F ++
Sbjct: 264 LALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDL 323
Query: 146 GS-RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
G+ R+IV+ N ++NGY MHG EAL
Sbjct: 324 GAGDRDIVAWNAMVNGYA--------------------------MHG-----HSREALAA 352
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYS 263
F ++ +G+ P + + VL+ACS + GR + R + + I ++D+
Sbjct: 353 FGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLG 412
Query: 264 KCGSLEEA--LVTFYKTDCKDVVTWTTMI 290
+ G +EEA LV D V W +++
Sbjct: 413 RAGRVEEAFELVQSMTRTKPDAVMWASLL 441
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 166/465 (35%), Positives = 260/465 (55%), Gaps = 7/465 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + K SD+++ N LI FY + A +FD+MP RD S+N+++ Y
Sbjct: 146 GMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGY-- 203
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
G I +++F+ I ++ L+ S + G V E L
Sbjct: 204 -VKGGR--IDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLIS 260
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+++ KC M++A LFD M R+IVS +I+GY VD+AR +FDE+ ++D
Sbjct: 261 WNSMIDGCVKCGRMEDAQGLFDRM-PNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERD 319
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V + +MM G V+ EAL +F M +G D ++ LSA + L ++ G +H
Sbjct: 320 VVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIH 379
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
RFI + + D + ALIDMYSKCGS+E A++ F K V W +I GLA +GLG
Sbjct: 380 RFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGE 439
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A +MER ++P++ TF+ +L AC H+GL+ EG F M V++V+P ++H+ C+
Sbjct: 440 LAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCM 499
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L RAG + +A+ F++ MP E + +++LLSAC T+ F++G+ VA N+M+L + S
Sbjct: 500 VDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRLDSPSP 559
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+YVL SN YA G W +V + R MK+ +K PG S I+L+ +
Sbjct: 560 SSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIELEGH 604
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 159/329 (48%), Gaps = 20/329 (6%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN ++ Y+ D E + L ++ G ADK TL ++ AC+R+ + G +H
Sbjct: 95 WNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLK 154
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K+ L ++N L+ Y KC + A ++FD M +R+ VS N +I+GY+ +DLAR
Sbjct: 155 KLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRM-PKRDSVSYNSMIDGYVKGGRIDLAR 213
Query: 172 EVFDEIV--DKDIVLWRSMMHGCVKAKQP-EEALELFKKMIDEGVTPDEEVMVSVLSACS 228
VFD I +++++ W S++ G +++ A +LF KM + + M+ C
Sbjct: 214 VVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLI-SWNSMIDGCVKCG 272
Query: 229 SLSNLQ--YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
+ + Q + R+ +R D +ID Y+K G ++ A F + +DVV +
Sbjct: 273 RMEDAQGLFDRMPNR---------DIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAY 323
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
M+ G G EAL +FY M+ G + AT + L+A G I +G + R +
Sbjct: 324 NAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIE 383
Query: 346 GV-YRVQPTIEHFVCLVDLLSRAGLLYQA 373
+ + + + V L+D+ S+ G + A
Sbjct: 384 EIGFSLDGRLG--VALIDMYSKCGSIENA 410
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 36/242 (14%)
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
LW +++ P+EA+ L M++ G D+ + VL ACS + ++ G +H +
Sbjct: 94 LWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLL 153
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG----------- 292
+ D F++ LI Y KCG L A F + +D V++ +MI+G
Sbjct: 154 KKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLAR 213
Query: 293 -------------------LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
+ Y + + V +Q+ K + + ++ S++ C G
Sbjct: 214 VVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGR 273
Query: 334 ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
+ + LF RM I + ++D ++ G + A MP D ++Y A++
Sbjct: 274 MEDAQGLFDRM-----PNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERD-VVAYNAMM 327
Query: 394 SA 395
Sbjct: 328 GG 329
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 173/525 (32%), Positives = 275/525 (52%), Gaps = 70/525 (13%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYG--RMALFTDARVLFDKMPFRDVGSWNTLMSIY--N 60
LHA KTA+ + +V + L+ Y ++ AR +FD++ R + WNT++ Y N
Sbjct: 32 LHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVEN 91
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
FS G ++LF +L+ E + D TL + CARL + GK +H A K+G +
Sbjct: 92 QFSHDG--IVLFHELVHE-YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVF 148
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY-----IDMEL--------- 166
++ +L+ MY+KC E+D A ++FD M +++V N LI+GY ID+ L
Sbjct: 149 VQGSLVNMYSKCGEIDCARKVFDGM-IDKDVVLWNSLIDGYARCGEIDIALQLFEEMPER 207
Query: 167 -----------------VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM- 208
V+ AR++FD++ +++V W +M++G +K+ + ALELF +M
Sbjct: 208 DAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMP 267
Query: 209 ------------------------------IDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+ G P +VSVLSA S L+ L GR
Sbjct: 268 IWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRW 327
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++ +N D + T+LI+MY+KCG +E AL F K V WT +I GL +G+
Sbjct: 328 IHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGM 387
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
N AL +F +M + G+KPN F+ VL AC H+GL+ +G Q F M Y+++PT+EH+
Sbjct: 388 ANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYG 447
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
CLVD+L RAG L +A+ I+ MP + + +LL + + D+G+ A ++++ +
Sbjct: 448 CLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPE 507
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ Y+LLSN YA G W +V+ R M + RK PG S ++ K
Sbjct: 508 TIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHK 552
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/179 (18%), Positives = 71/179 (39%), Gaps = 1/179 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+++ K + D +G SLI Y + A +F + + VG W ++
Sbjct: 325 GRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGI 384
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-VHCYATKVGLEYMLN 120
+ L LF ++ G+ + I + + +AC + G+ + +E L
Sbjct: 385 HGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLE 444
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
L+ + + ++EA + M N V L+ G + +D+ +++
Sbjct: 445 HYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIE 503
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 149/427 (34%), Positives = 249/427 (58%), Gaps = 5/427 (1%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR++F+++P + N+++ Y + + + ++ ++ ++ +G+ D+ T LF +C
Sbjct: 31 ARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGV 90
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
L + GK +HC++TK+G ++N L+ MY+ C + A ++FD+M +++VS
Sbjct: 91 LCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM-VNKSVVSWAT 146
Query: 157 LINGYIDMELVDLAREVFDEI-VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215
+I Y +L A ++F + + ++ W M++G V+ EEAL LF +M GV
Sbjct: 147 MIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKG 206
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
D+ M S+L AC+ L L+ G+ +H +I + I D + TAL+DMY+KCGS+E A+ F
Sbjct: 207 DKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVF 266
Query: 276 YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335
+ KDV+TWT +I GLA G G +AL +F++M+ +KP+ TFV VLAAC H+GL+
Sbjct: 267 QEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVN 326
Query: 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
EG F M Y +QP+IEH+ C+VD+L RAG + +AE+ I+ MP + LLSA
Sbjct: 327 EGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSA 386
Query: 396 CITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKP 455
C + + ++ A +++L ++ YVLLSN Y+ +W + R M E +K P
Sbjct: 387 CRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPP 446
Query: 456 GNSIIDL 462
G S I++
Sbjct: 447 GCSAIEV 453
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 128/307 (41%), Gaps = 73/307 (23%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH H TK SD Y+ N+L++ Y AR +FDKM + V SW T++ Y
Sbjct: 94 GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQ 153
Query: 62 F--------------------------------SDSGEVLILFKQLIFEGIVADKITLVI 89
+ SD E L LF ++ G+ DK+T+
Sbjct: 154 WDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMAS 213
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L AC L L GK +H Y K +E + + AL+ MYAKC ++ A+R+F EM
Sbjct: 214 LLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMP--- 270
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+KD++ W +++ G Q +ALELF +M
Sbjct: 271 -----------------------------EKDVMTWTALIVGLAMCGQGLKALELFHEMQ 301
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-----RLVHRFILQNNITQDAFVKTALIDMYSK 264
V PD V VL+ACS + G + +++ +Q +I ++DM +
Sbjct: 302 MSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYG----CMVDMLGR 357
Query: 265 CGSLEEA 271
G + EA
Sbjct: 358 AGRIAEA 364
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 1/146 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH ++ K ++ D+ +G +L+ Y + A +F +MP +DV +W L+
Sbjct: 226 LGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLA 285
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
+ L LF ++ + D IT V + +AC+ ++ G + K G++ +
Sbjct: 286 MCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSI 345
Query: 120 NMENALLLMYAKCKEMDEALRLFDEM 145
++ M + + EA L M
Sbjct: 346 EHYGCMVDMLGRAGRIAEAEDLIQNM 371
>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 1131
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 158/531 (29%), Positives = 267/531 (50%), Gaps = 71/531 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH + K S+++V N+L+ Y + +AR F+ M D SWN ++ Y
Sbjct: 429 GGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQ 488
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E +F++++ G++ D+++L + SACA +++ G+ HC KVGL+
Sbjct: 489 EEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCA 548
Query: 122 ENALLLMYAKC------------------------------KEMDEALRLFDEM---GSR 148
++L+ MY KC ++EA+ LF E+ G +
Sbjct: 549 GSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMSHLEEAIHLFQEIQMVGLK 608
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIV------------------------------ 178
V+ L++G +++L R++ +++
Sbjct: 609 PTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRFADSET 668
Query: 179 -------DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
K +V+W +++ G + E+AL+ ++ M + + PD+ SVL AC+ +S
Sbjct: 669 LFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACAGMS 728
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD-VVTWTTMI 290
+LQ G+ VH I D ++LIDMY+KCG ++ +L F++ ++ V++W +MI
Sbjct: 729 SLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMI 788
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
GLA G EAL +F QME++ I P+E TF+ VL+AC H+G ++EG ++F M Y++
Sbjct: 789 VGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMVNNYKL 848
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
QP ++H C+VD+L R G L +AEEFI + + + + LL AC + + GK+ AN
Sbjct: 849 QPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHGDEVRGKRAAN 908
Query: 411 NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+M+L QS +YVLLS YA +W+ RR MK +K PG S I+
Sbjct: 909 KLMELKPQSSSSYVLLSGLYAESENWSGADSLRREMKLKGVKKLPGYSWIE 959
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/427 (27%), Positives = 212/427 (49%), Gaps = 40/427 (9%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H+ K + +GN ++ Y + A+ F ++ +DV +WN+++S+Y D
Sbjct: 61 KVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDH 120
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
V+ F + G+ ++ T ++ SAC+ L+ ++YGK VHC K+G + +
Sbjct: 121 GLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQ 180
Query: 123 NALLLMYAKCKEMD-------------------------------EALRLFDEM---GSR 148
L+ MYAKC+ + EA+++FD+M G
Sbjct: 181 GGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHV 240
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+ ++L +IN Y+ + + AR++F +I + ++V W M+ G K EEA+ F ++
Sbjct: 241 PDQIALVTVINAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLEL 300
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
G+ + SVLSA +SLS L YG +VH ++ + + +V +AL++MY+KC +
Sbjct: 301 KKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKM 360
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
+ A F +++V W M+ G A GL E + F M+R G +P+E TF S+ +AC
Sbjct: 361 DAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSAC 420
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
+ G QL M + + T FV LVD+ +++G L +A + + M D
Sbjct: 421 ASLHYLDFGGQLHTVM---IKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDN- 476
Query: 387 ISYKALL 393
+S+ A++
Sbjct: 477 VSWNAII 483
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/440 (27%), Positives = 202/440 (45%), Gaps = 70/440 (15%)
Query: 23 SLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVA 82
++I+ Y + DAR LF ++P +V +WN ++S + + E + F +L G+ A
Sbjct: 248 TVINAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKA 307
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
+ +L + SA A L L+YG VH A K GL+ + + +AL+ MYAKC +MD A
Sbjct: 308 TRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAA---- 363
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
++VF+ + +++IVLW +M+ G + +E +
Sbjct: 364 ----------------------------KQVFNSLGERNIVLWNAMLGGFAQNGLAQEVM 395
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
E F M G PDE S+ SAC+SL L +G +H +++N T + FV AL+DMY
Sbjct: 396 EFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMY 455
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
+K G+L+EA F D V+W +I G +EA +F +M G+ P+E +
Sbjct: 456 AKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLA 515
Query: 323 SVLAACRH----------------SGLITEGC------QLFRRMGGV-----------YR 349
S+++AC + GL T C ++ + G V YR
Sbjct: 516 SIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYR 575
Query: 350 VQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
+I + + L A L+Q + + + P E +++ LL C +LG++
Sbjct: 576 NVVSINALIAGYTMSHLEEAIHLFQEIQMVGLKPTE---VTFAGLLDGCDGAFMLNLGRQ 632
Query: 408 VANNMMKLGNQSHEAYVLLS 427
+ +MK G S V +S
Sbjct: 633 IHGQVMKWGFLSSSEMVCVS 652
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 163/339 (48%), Gaps = 33/339 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HA K LD ++YVG++L++ Y + + A+ +F+ + R++ WN ++ +
Sbjct: 328 GSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQ 387
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ EV+ F + G D+ T +FSACA L L +G +H K L +
Sbjct: 388 NGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFV 447
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MYAK + EA + F+ M N VS N +I GY+ E D
Sbjct: 448 ANALVDMYAKSGALKEARKQFEFMKIHDN-VSWNAIIVGYVQEEYND------------- 493
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
EA +F++M+ GV PDE + S++SAC+++ + G+ H
Sbjct: 494 ------------------EAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHC 535
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+++ + ++LIDMY KCG + A FY ++VV+ +I G L E
Sbjct: 536 LLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMSHL-EE 594
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
A+ +F +++ G+KP E TF +L C + ++ G Q+
Sbjct: 595 AIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQI 633
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 130/265 (49%), Gaps = 8/265 (3%)
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
N++++ Y+ VD A++ F + KD+ W S++ + ++ F M + GV
Sbjct: 80 NVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHGVR 139
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
P+E VLSACS L ++ YG+ VH + + +F + LIDMY+KC +L +A +
Sbjct: 140 PNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLV 199
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F D V+WTT+I G G EA++VF +M+R G P++ V+V+ A G +
Sbjct: 200 FDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRL 259
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF---IKIMPAEDKFISYKA 391
+ +LF ++ P + + ++ ++ G +A F +K + S +
Sbjct: 260 ADARKLFTQI-----PNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGS 314
Query: 392 LLSACITYSEFDLGKKVANNMMKLG 416
+LSA + S + G V +K G
Sbjct: 315 VLSAIASLSMLNYGSMVHAQAIKEG 339
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
L L +++H L+ + + ++D+Y KCG+++ A F + + KDV W ++
Sbjct: 54 LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG----CQLFRRMG 345
+ ++GL ++ F M G++PNE TF VL+AC I G C +F +MG
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVF-KMG 172
Query: 346 GVYR 349
+R
Sbjct: 173 FGFR 176
>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
Length = 728
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 153/449 (34%), Positives = 259/449 (57%), Gaps = 2/449 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ +++ Y +AR +FD+MP R+ SW+ +++ Y+ + E L LF +++
Sbjct: 249 DVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMV 308
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
EG + SA A L L G +H + TK+G++ + + ++L+ +Y KC + D
Sbjct: 309 QEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPD 368
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+ +FD + +N+V N ++ GY ++ E+F+ I +K+ W +++ G ++ +
Sbjct: 369 DGRLVFDLI-LEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENE 427
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
Q E+ LE+F ++ G TP++ SVL AC+S+++L G VH I++ I D FV T
Sbjct: 428 QCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGT 487
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IK 315
AL DMY+KCG + + F + K+ ++WT MI+GLA G E+L +F +MER +
Sbjct: 488 ALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVA 547
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
PNE +SVL AC H GL+ +G F M VY ++P +H+ C+VDLLSR+G LY+AEE
Sbjct: 548 PNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEE 607
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
FI+ +P + + ++ ALLS C Y + + ++ A + +L + YVLLSN YA G
Sbjct: 608 FIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGR 667
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDLKH 464
W +V+ R+ M+E +K G S +++++
Sbjct: 668 WIDVSNIRKLMREKGLKKSGGCSWVEVRN 696
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/483 (26%), Positives = 223/483 (46%), Gaps = 81/483 (16%)
Query: 8 HVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-------- 59
+ K SD+ V N +I Y + AR+LFD+MP R+ SW+ L+S
Sbjct: 77 QIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEE 136
Query: 60 -------NDFSD--------SG--------EVLILFKQLIFEGIVADKITLVILFSACAR 96
N F + SG E L LF +L+ G+ + +T + AC
Sbjct: 137 SMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGE 196
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
L G ++ K G E+ L++ N+L+ + + E+D A R+FD M +R++VS
Sbjct: 197 LGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRM-EKRDVVSWTA 255
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
+++ Y++ + AR +FDE+ +++ + W +M+ ++ EEAL+LF KM+ EG P+
Sbjct: 256 ILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPN 315
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
LSA +SL L G +H + + I +D F+ ++LID+Y KCG ++ + F
Sbjct: 316 ISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFD 375
Query: 277 KTDCKDVVTWTTMIEG----------------------------LANYGLGNE----ALR 304
K+VV W +M+ G JA Y L NE L
Sbjct: 376 LILEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGY-LENEQCEKVLE 434
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVD 362
VF + G PN++TF SVL AC + +G + G + ++ + FV L D
Sbjct: 435 VFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVH---GKIIKLGIQYDIFVGTALTD 491
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLS----------ACITYSEFDLGKKVANNM 412
+ ++ G + +++ + MP +++ IS+ ++ + I + E + +VA N
Sbjct: 492 MYAKCGDIGSSKQVFERMPEKNE-ISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNE 550
Query: 413 MKL 415
+ L
Sbjct: 551 LML 553
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 153/323 (47%), Gaps = 27/323 (8%)
Query: 53 NTLMSIYNDFSDSGEVL---ILFKQLIFEGIVADK---ITLVILFSACARLEKLHYGKTV 106
T +S+ FS+ G + +L LI G + + I L+IL+ C + ++ + V
Sbjct: 22 QTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEID--QIV 79
Query: 107 HCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMEL 166
+ L + N ++ Y + + +A LFDEM RN VS + LI+G +
Sbjct: 80 KEFDGS-----DLVVSNCMISAYVQWGNLVQARLLFDEM-PERNEVSWSALISGLMKYGR 133
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
V+ + F+ +++V W + + G V+ EAL+LF ++++ GV P++ SV+ A
Sbjct: 134 VEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRA 193
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C L + G + +++ V +LI + + G ++ A F + + +DVV+W
Sbjct: 194 CGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSW 253
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
T +++ G EA R+F +M + NE ++ +++A SG E +LF +M
Sbjct: 254 TAILDAYVETGDLREARRIFDEMPER----NEISWSAMIARYSQSGYAEEALKLFSKM-- 307
Query: 347 VYRVQ----PTIEHFVCLVDLLS 365
VQ P I F C + L+
Sbjct: 308 ---VQEGFKPNISCFACTLSALA 327
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 137/330 (41%), Gaps = 68/330 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD------------------- 42
G +H HVTK +D D+++G+SLI Y + D R++FD
Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394
Query: 43 ------------KMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+P ++ SW T+++ Y + +VL +F L+ G +K T +
Sbjct: 395 NGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSV 454
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
ACA + L G VH K+G++Y + + AL MYAKC ++ + ++F+ M
Sbjct: 455 LCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERM----- 509
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+K+ + W M+ G ++ E+L LF++M
Sbjct: 510 ---------------------------PEKNEISWTVMIQGLAESGFAVESLILFEEMER 542
Query: 211 EG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NNITQDAFVKTALIDMYSKCGSL 268
V P+E +++SVL ACS + G + + I T ++D+ S+ G L
Sbjct: 543 TSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRL 602
Query: 269 EEALVTFYKTDC--KDVVTWTTMIEGLANY 296
EA F +T + W ++ G Y
Sbjct: 603 YEA-EEFIRTIPFQPEANAWAALLSGCKKY 631
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 162/459 (35%), Positives = 243/459 (52%), Gaps = 5/459 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LHA + +D D VG L Y L P + + + ++
Sbjct: 54 LHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGL 113
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
L L +++ G++ TL AC L G+ +H YA K+ L + A
Sbjct: 114 HLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHAYAFKLALAGDSYVATA 170
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
LL MYA+ + D A LFDEM ++V + ++ Y M +D ARE+FD + KD +
Sbjct: 171 LLGMYARGGDADAARALFDEM-PDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFIC 229
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ G + +P EAL LF+ M+ GV PDE ++ LSA + L + GR +H ++
Sbjct: 230 WNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVK 289
Query: 245 QNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ Q +A V TALIDMY KCGSLE+A+ F KD+V W MI G A +G +AL
Sbjct: 290 NSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKAL 349
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
+F Q+ +G+ P + TF+ +L AC HSGL+ EG Q F+ M Y + P IEH+ C+VDL
Sbjct: 350 EMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDL 409
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L RAGL+ +A ++ M + + +LL+AC + LG+++A+ ++ G + Y
Sbjct: 410 LGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMY 469
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+LLSN YA G+W EVA R MK +K+PG S I++
Sbjct: 470 ILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEV 508
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 147/362 (40%), Gaps = 99/362 (27%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDK----------------- 43
+G+ LHA+ K AL D YV +L+ Y R AR LFD+
Sbjct: 148 LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYA 207
Query: 44 --------------MPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
MP +D WN ++ Y E L LF+ ++ G+ D++ +++
Sbjct: 208 KMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIIL 267
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNME--NALLLMYAKCKEMDEALRLFDEMGS 147
SA A+L G+ +H Y K LN AL+ MY KC +++A+ +F+ +G
Sbjct: 268 ALSAVAQLGTAESGRWLHSY-VKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGD 326
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
++IV N +INGY MHG +ALE+F +
Sbjct: 327 -KDIVVWNAMINGY--------------------------AMHG-----DSRKALEMFSQ 354
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
+ +G+ P + + +L+ACS + G H+F S
Sbjct: 355 LRSQGLWPTDITFIGLLNACSHSGLVDEG---HQFFQ----------------------S 389
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+EE K + + M++ L GL EA F+ ++ I P+ +VS+LAA
Sbjct: 390 MEEEYAIVPKIE-----HYGCMVDLLGRAGLIEEA---FHLVQSMTIAPDTVMWVSLLAA 441
Query: 328 CR 329
CR
Sbjct: 442 CR 443
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 267/463 (57%), Gaps = 2/463 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K ++A + L ++ ++ F ++ A LF+++ +V +N+++ Y
Sbjct: 27 KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 63 SDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S +V+ ++KQL+ + + D+ T +F +CA L + GK VH + K G + +
Sbjct: 87 SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVT 146
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENAL+ MY K ++ +A ++FDEM R+++S N L++GY + + A+ +F ++DK
Sbjct: 147 ENALIDMYMKFDDLVDAHKVFDEM-YERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKT 205
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W +M+ G EA++ F++M G+ PDE ++SVL +C+ L +L+ G+ +H
Sbjct: 206 IVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHL 265
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + V ALI+MYSKCG + +A+ F + + KDV++W+TMI G A +G +
Sbjct: 266 YAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHG 325
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ F +M+R +KPN TF+ +L+AC H G+ EG + F M Y+++P IEH+ CL+
Sbjct: 326 AIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLI 385
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L+RAG L +A E K MP + + +LLS+C T D+ +++++L +
Sbjct: 386 DVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMG 445
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVLL+N YA G W +V+ R+ ++ +K PG S+I++ +
Sbjct: 446 NYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNN 488
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 126/304 (41%), Gaps = 64/304 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H H+ K + N+LI Y + DA +FD+M RDV SWN+L+S Y
Sbjct: 127 LGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYA 186
Query: 61 DFSD-----------------------SG--------EVLILFKQLIFEGIVADKITLVI 89
SG E + F+++ GI D+I+L+
Sbjct: 187 RLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLIS 246
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +CA+L L GK +H YA + G + NAL+ MY+KC + +A++LF +M +
Sbjct: 247 VLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGK- 305
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D++ W +M+ G A+E F +M
Sbjct: 306 -------------------------------DVISWSTMISGYAYHGNAHGAIETFNEMQ 334
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSL 268
V P+ + +LSACS + Q G + Q+ I LID+ ++ G L
Sbjct: 335 RAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKL 394
Query: 269 EEAL 272
E A+
Sbjct: 395 ERAV 398
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 162/459 (35%), Positives = 243/459 (52%), Gaps = 5/459 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LHA + +D D VG L Y L P + + + ++
Sbjct: 53 LHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGL 112
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
L L +++ G++ TL AC L G+ +H YA K+ L + A
Sbjct: 113 HLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHAYAFKLALAGDSYVATA 169
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
LL MYA+ + D A LFDEM ++V + ++ Y M +D ARE+FD + KD +
Sbjct: 170 LLGMYARGGDADAARALFDEM-PDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFIC 228
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ G + +P EAL LF+ M+ GV PDE ++ LSA + L + GR +H ++
Sbjct: 229 WNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVK 288
Query: 245 QNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ Q +A V TALIDMY KCGSLE+A+ F KD+V W MI G A +G +AL
Sbjct: 289 NSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKAL 348
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
+F Q+ +G+ P + TF+ +L AC HSGL+ EG Q F+ M Y + P IEH+ C+VDL
Sbjct: 349 EMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDL 408
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L RAGL+ +A ++ M + + +LL+AC + LG+++A+ ++ G + Y
Sbjct: 409 LGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMY 468
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+LLSN YA G+W EVA R MK +K+PG S I++
Sbjct: 469 ILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEV 507
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 147/362 (40%), Gaps = 99/362 (27%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDK----------------- 43
+G+ LHA+ K AL D YV +L+ Y R AR LFD+
Sbjct: 147 LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYA 206
Query: 44 --------------MPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
MP +D WN ++ Y E L LF+ ++ G+ D++ +++
Sbjct: 207 KMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIIL 266
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNME--NALLLMYAKCKEMDEALRLFDEMGS 147
SA A+L G+ +H Y K LN AL+ MY KC +++A+ +F+ +G
Sbjct: 267 ALSAVAQLGTAESGRWLHSY-VKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGD 325
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
++IV N +INGY MHG +ALE+F +
Sbjct: 326 -KDIVVWNAMINGY--------------------------AMHG-----DSRKALEMFSQ 353
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
+ +G+ P + + +L+ACS + G H+F S
Sbjct: 354 LRSQGLWPTDITFIGLLNACSHSGLVDEG---HQFFQ----------------------S 388
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+EE K + + M++ L GL EA F+ ++ I P+ +VS+LAA
Sbjct: 389 MEEEYAIVPKIE-----HYGCMVDLLGRAGLIEEA---FHLVQSMTIAPDTVMWVSLLAA 440
Query: 328 CR 329
CR
Sbjct: 441 CR 442
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 152/460 (33%), Positives = 241/460 (52%), Gaps = 32/460 (6%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +HA + ++ V N L++ Y DA+ LFD M R SW+ ++ Y
Sbjct: 70 RQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKV 129
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ +F++L+ G D + ++ AC L+ L G+ +HC K GL+Y +
Sbjct: 130 GNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVC 189
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
L+ MYA+CK +V+ A ++F ++ +D+
Sbjct: 190 ATLVDMYARCK--------------------------------VVEDAHQIFVKMWKRDL 217
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W M+ ++ P E+L F +M ++G+ PD+ +V+V+ AC+ L + + +H +
Sbjct: 218 ATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAY 277
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
I + D + TA+IDMY+KCGS+E A F + ++V+TW+ MI +G G +A
Sbjct: 278 INGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKA 337
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F M R GI PN TFVS+L AC H+GLI EG + F M Y V P ++H+ C+VD
Sbjct: 338 LELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVD 397
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL RAG L +A E I+ MP E + + ALL AC + DL ++VA +++KL +Q
Sbjct: 398 LLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGH 457
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA G W ++A+ R M + RK PG + I++
Sbjct: 458 YVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEV 497
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 132/291 (45%), Gaps = 34/291 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K LD +V +L+ Y R + DA +F KM RD+ +W ++ +
Sbjct: 170 GRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAE 229
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L+ F ++ +GIV DK+ LV + ACA+L ++ K +H Y G + +
Sbjct: 230 SGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVIL 289
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
A++ MYAKC ++ A +FD M RN+++ + +I Y
Sbjct: 290 GTAMIDMYAKCGSVESARWIFDRM-QVRNVITWSAMIAAY-------------------- 328
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVH 240
HG Q E+ALELF M+ G+ P+ VS+L ACS ++ G R
Sbjct: 329 ------GYHG-----QGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFS 377
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-KDVVTWTTMI 290
+ +T D T ++D+ + G L+EAL KD V W ++
Sbjct: 378 SMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALL 428
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
S+ S NL R VH I N ++ V L+ MY + G+LE+A F +
Sbjct: 58 SSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPY 117
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
+W+ ++ G A G +F ++ R G ++ + V+ ACR + G R+
Sbjct: 118 SWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCG-----RL 172
Query: 345 GGVYRVQPTIE--HFVC--LVDLLSRAGLLYQAEE-FIKI 379
++ ++ HFVC LVD+ +R ++ A + F+K+
Sbjct: 173 IHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKM 212
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 161/448 (35%), Positives = 247/448 (55%), Gaps = 6/448 (1%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
+I S++ Y +M AR FD+MP R V SWN + S Y E L LF Q++
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
EGI D T V+ S+C+ + ++ + + ++ ALL M+AK ++
Sbjct: 251 EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLE 310
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A +FDE+GS+RN V+ NI+I+ Y + + LARE+FD + +D+V W SM+ G +
Sbjct: 311 IARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNG 370
Query: 197 QPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK 255
+ ++ELFK+MI + PDE + SVLSAC + L+ V + + NI
Sbjct: 371 ESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGF 430
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
+LI MYSKCGS+ +A F +DVV++ T+I G A G G EA+++ ME +GI+
Sbjct: 431 NSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIE 490
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
P+ T++ VL AC H+GL+ EG +F+ + PT++H+ C+VDLL RAG L +A+
Sbjct: 491 PDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGRAGELDEAKM 545
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
I+ MP + Y +LL+A + LG+ A+ + +L Q+ YVLLSN YA G
Sbjct: 546 LIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGR 605
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDLK 463
W +V R MK+ +K G S ++ K
Sbjct: 606 WEDVKRVREMMKKGGLKKSVGMSWVEYK 633
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 119/462 (25%), Positives = 203/462 (43%), Gaps = 81/462 (17%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRM---ALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+ H H+ +L S Y + L+ R+ + D+ +F P D ++ ++ Y
Sbjct: 18 RQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDS--IFTSSPSPDASVYSCMLKYY 75
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ +V+ LFK + + L + G H Y K+G
Sbjct: 76 SRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGK-----SGNMFHAYVLKLGHIDDH 130
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSR------------------------------R 149
+ NA+L MYAK ++D A LF++M R R
Sbjct: 131 FIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPAR 190
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
NI++ ++ GY M ++ AR FDE+ ++ +V W +M + + P+EAL LF +M+
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+EG+TPD+ V +S+CSS+ + + R I Q +I ++FVKTAL+DM++K G+LE
Sbjct: 251 EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLE 310
Query: 270 EA------------------LVTFY--------------KTDCKDVVTWTTMIEGLANYG 297
A +++ Y +DVV+W +MI G A G
Sbjct: 311 IARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNG 370
Query: 298 LGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR---VQPT 353
++ +F +M I+P+E T SVL+AC H G + +L + + R ++
Sbjct: 371 ESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGAL----KLSYWVLDIVREKNIKLG 426
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
I F L+ + S+ G + A + M D +S+ L+S
Sbjct: 427 ISGFNSLIFMYSKCGSVADAHRIFQTMGTRD-VVSFNTLISG 467
>gi|147791119|emb|CAN74703.1| hypothetical protein VITISV_029224 [Vitis vinifera]
Length = 677
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 161/465 (34%), Positives = 251/465 (53%), Gaps = 8/465 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H K ++SDIYV +++ Y A+ +FD++ ++V S+N +S
Sbjct: 213 VHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGA 272
Query: 65 SGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
V +FK L+ G V + +TLV + SAC++L + +G+ +H K+ + + +
Sbjct: 273 PHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGT 332
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI----VD 179
AL+ MY+KC A +F E+ RN+V+ N +I G + D+A E+F+++ ++
Sbjct: 333 ALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLE 392
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D W +M+ G + Q EA + F KM GV + + S+L ACS+LS LQ G+ +
Sbjct: 393 PDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEI 452
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF--YKTDCKDVVTWTTMIEGLANYG 297
H ++ NI D F+ TALIDMY KCG A F ++ D W MI G G
Sbjct: 453 HGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNG 512
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
A +F QM+ + ++PN AT VS+L+ C H+G I G QLF+ M Y + PT EHF
Sbjct: 513 KYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSEHF 572
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL R+G L +A+E I MP E + +LL AC +S+ LG+++A + +L
Sbjct: 573 GCMVDLLGRSGRLKEAQELIHEMP-EASVSVFASLLGACRHHSDSALGEEMAKKLSELEP 631
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Q +V+LSN YA++G W +V R M + +K PG S I +
Sbjct: 632 QDPTPFVILSNIYAVQGRWGDVERVREMMNDRGLKKPPGCSSIGV 676
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 177/347 (51%), Gaps = 41/347 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH + KT DIY +L Y ++ L + A +F++MP R++ S N +S
Sbjct: 112 GQILHTQLIKTGFHLDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTIS---G 168
Query: 62 FSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
FS +G E L FKQ+ + +T+ + ACA +E VHC A K+G+E
Sbjct: 169 FSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACASVE---LDGQVHCLAIKLGVESD 225
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + A++ MY+ C E+ A ++FD++ +N+VS N I+G + L +VF +++
Sbjct: 226 IYVATAVVTMYSNCGELVLAKKVFDQI-LDKNVVSYNAFISGLLQNGAPHLVFDVFKDLL 284
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+ G P+ +VS+LSACS L +++GR
Sbjct: 285 E------------------------------SSGEVPNSVTLVSILSACSKLLYIRFGRQ 314
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK-TDCKDVVTWTTMIEGLANYG 297
+H +++ I D V TAL+DMYSKCG A F + + +++VTW +MI G+ G
Sbjct: 315 IHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNG 374
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
+ A+ +F Q+E +G++P+ AT+ ++++ G + E + F +M
Sbjct: 375 QSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKM 421
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 148/342 (43%), Gaps = 41/342 (11%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
E L L+ +L ++ K T L A A+L G+ +H K G + AL
Sbjct: 76 EALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAATALA 135
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
MY K + AL++F+EM RN+ SLN+ I+G+ +R +
Sbjct: 136 DMYMKLHLLSYALKVFEEM-PHRNLPSLNVTISGF--------SRNGYF----------- 175
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
EAL FK++ P+ + SVL AC+S ++ VH ++
Sbjct: 176 ------------REALGAFKQVGLGNFRPNSVTIASVLPACAS---VELDGQVHCLAIKL 220
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ D +V TA++ MYS CG L A F + K+VV++ I GL G + VF
Sbjct: 221 GVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVF 280
Query: 307 YQ-MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDL 363
+E G PN T VS+L+AC I G Q+ G V +++ + V LVD+
Sbjct: 281 KDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQIH---GLVVKIEINFDTMVGTALVDM 337
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
S+ G + A + +++ ++++ + + D+
Sbjct: 338 YSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIA 379
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 161/448 (35%), Positives = 247/448 (55%), Gaps = 6/448 (1%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
+I S++ Y +M AR FD+MP R V SWN + S Y E L LF Q++
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
EGI D T V+ S+C+ + ++ + + ++ ALL M+AK ++
Sbjct: 251 EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLE 310
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A +FDE+GS+RN V+ NI+I+ Y + + LARE+FD + +D+V W SM+ G +
Sbjct: 311 IARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNG 370
Query: 197 QPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK 255
+ ++ELFK+MI + PDE + SVLSAC + L+ V + + NI
Sbjct: 371 ESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGF 430
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
+LI MYSKCGS+ +A F +DVV++ T+I G A G G EA+++ ME +GI+
Sbjct: 431 NSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIE 490
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
P+ T++ VL AC H+GL+ EG +F+ + PT++H+ C+VDLL RAG L +A+
Sbjct: 491 PDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGRAGELDEAKM 545
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
I+ MP + Y +LL+A + LG+ A+ + +L Q+ YVLLSN YA G
Sbjct: 546 LIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGR 605
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDLK 463
W +V R MK+ +K G S ++ K
Sbjct: 606 WEDVKRVREMMKKGGLKKSVGMSWVEYK 633
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 119/462 (25%), Positives = 203/462 (43%), Gaps = 81/462 (17%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRM---ALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+ H H+ +L S Y + L+ R+ + D+ +F P D ++ ++ Y
Sbjct: 18 RQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDS--IFTSSPSPDASVYSCMLKYY 75
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ +V+ LFK + + L + G H Y K+G
Sbjct: 76 SRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGK-----SGNLFHAYVLKLGHIDDH 130
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSR------------------------------R 149
+ NA+L MYAK ++D A LF++M R R
Sbjct: 131 FIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPAR 190
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
NI++ ++ GY M ++ AR FDE+ ++ +V W +M + + P+EAL LF +M+
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+EG+TPD+ V +S+CSS+ + + R I Q +I ++FVKTAL+DM++K G+LE
Sbjct: 251 EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLE 310
Query: 270 EA------------------LVTFY--------------KTDCKDVVTWTTMIEGLANYG 297
A +++ Y +DVV+W +MI G A G
Sbjct: 311 IARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNG 370
Query: 298 LGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR---VQPT 353
++ +F +M I+P+E T SVL+AC H G + +L + + R ++
Sbjct: 371 ESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGAL----KLSYWVLDIVREKNIKLG 426
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
I F L+ + S+ G + A + M D +S+ L+S
Sbjct: 427 ISGFNSLIFMYSKCGSVADAHRIFQTMGTRD-VVSFNTLISG 467
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 173/532 (32%), Positives = 271/532 (50%), Gaps = 70/532 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA+V + + D+ V N LI FY + R LFD+M +++ SW T++S Y
Sbjct: 249 GKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQ 308
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E + LF ++ G D + ++C E L G+ VH Y K LE +
Sbjct: 309 NSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFV 368
Query: 122 ENALLLMYAKC-------------------------------KEMDEALRLFDEMGSR-- 148
+N L+ MYAK +++ EAL LF EM R
Sbjct: 369 KNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLF 428
Query: 149 -----------------------RNI--------VSLNI-----LINGYIDMELVDLARE 172
+ I VSL++ LI+ Y V AR
Sbjct: 429 PPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARH 488
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
VF+E+ +KDIV+W +M G + + EEAL+L+ + P+E ++++A S+L++
Sbjct: 489 VFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLAS 548
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L++G+ H +++ + FV AL+DMY+KCGS+EEA F + +DVV W +MI
Sbjct: 549 LRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMIST 608
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
A +G EAL +F +M ++GI+PN TFV+VL+AC H+G + +G F M G + ++P
Sbjct: 609 HAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPG-FGIKP 667
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
EH+ C+V LL R+G L++A+EFI+ MP E I +++LLSAC +LGK A
Sbjct: 668 GTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMA 727
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ + +Y+LLSN +A +G W +V + R M + K+PG S I++ +
Sbjct: 728 ISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNN 779
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 113/396 (28%), Positives = 198/396 (50%), Gaps = 43/396 (10%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H + + L SD ++ N LI+ + +ARV+FDKMP +++ +W++++S+Y+
Sbjct: 47 KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 106
Query: 63 SDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E L++F L + G ++ L + AC +L + G +H + + G + + +
Sbjct: 107 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 166
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ Y+K ++EA R VFD++ +K
Sbjct: 167 GTSLIDFYSKNGNIEEA--------------------------------RLVFDQLSEKT 194
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +++ G K + +LELF +M + V PD V+ SVLSACS L L+ G+ +H
Sbjct: 195 AVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHA 254
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++L+ D V LID Y+KC ++ F + K++++WTTMI G E
Sbjct: 255 YVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWE 314
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE--HFV- 358
A+++F +M R G KP+ SVL +C + +G Q+ Y ++ +E FV
Sbjct: 315 AMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVH-----AYTIKANLESDEFVK 369
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
L+D+ +++ LL A++ +M AE ISY A++
Sbjct: 370 NGLIDMYAKSNLLIDAKKVFDVM-AEQNVISYNAMI 404
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 167/325 (51%), Gaps = 32/325 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH V ++ D D+YVG SLI FY + +AR++FD++ + +W T+++ Y
Sbjct: 148 GAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTK 207
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S L LF Q+ +V D+ + + SAC+ LE L GK +H Y + G E +++
Sbjct: 208 CGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSV 267
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L+ Y KC + +LFD+M +NI+S +I+GY+ + FD
Sbjct: 268 VNVLIDFYTKCNRVKAGRKLFDQM-VVKNIISWTTMISGYM--------QNSFD------ 312
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
W EA++LF +M G PD SVL++C S L+ GR VH
Sbjct: 313 ---W--------------EAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHA 355
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ ++ N+ D FVK LIDMY+K L +A F ++V+++ MIEG ++ +E
Sbjct: 356 YTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSE 415
Query: 302 ALRVFYQMERKGIKPNEATFVSVLA 326
AL +F++M + P+ TFVS+L
Sbjct: 416 ALELFHEMRVRLFPPSLLTFVSLLG 440
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 32/236 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H + K + D++ G++LI Y + + DAR +F++M +D+ WN + Y
Sbjct: 450 LSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYT 509
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ E L L+ L F ++ T L +A + L L +G+ H K+GL++
Sbjct: 510 QHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPF 569
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC ++E AR++F+ + +
Sbjct: 570 VTNALVDMYAKCGSIEE--------------------------------ARKMFNSSIWR 597
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
D+V W SM+ + + EEAL +F++M+ EG+ P+ V+VLSACS ++ G
Sbjct: 598 DVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDG 653
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 6/162 (3%)
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
P ++L S + + + +++H I+ + + D F+ LI++ SK ++ A V
Sbjct: 25 PKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVV 84
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK-GIKPNEATFVSVLAACRHSGL 333
F K K+++TW++M+ + G EAL VF ++RK G PNE SV+ AC G+
Sbjct: 85 FDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGV 144
Query: 334 ITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQA 373
+ +G QL G V R + +V L+D S+ G + +A
Sbjct: 145 VEKGAQLH---GFVVRSGFDQDVYVGTSLIDFYSKNGNIEEA 183
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 141/342 (41%), Positives = 213/342 (62%), Gaps = 1/342 (0%)
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N +L Y E+ EA R+FD M R++VS N +I+GY VDLAREVF+ + D+D
Sbjct: 110 NVMLAAYVTRGEVAEARRVFDGM-RERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDA 168
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W SMM K ++ ++ALEL+++M V PD MVSVLSACS + L G VH+F
Sbjct: 169 FSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQF 228
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+ N + D + TALIDMY+KCG +E ++ F+ KDV+TW++MI GLAN+G G++A
Sbjct: 229 VESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDA 288
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F +M +G++PNE TF+ VL +C H GL+++G + F M V+ V P ++H+ C+VD
Sbjct: 289 LSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVD 348
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL R+G + +A++ I+ MP E + ++ALL AC Y ++ ++ + L +
Sbjct: 349 LLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGH 408
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVLLSN YA W VAE RR ++ + ++ PG S I+ ++
Sbjct: 409 YVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQN 450
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 124/278 (44%), Gaps = 34/278 (12%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ D+ N++IH Y AR +F+ M RD SW+++MS Y S + L L+++
Sbjct: 134 ERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWRE 193
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+ + D T+V + SAC+ + L G VH + G+E + + AL+ MYAKC +
Sbjct: 194 MRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGD 253
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
++ ++R+F M KD++ W SM+ G
Sbjct: 254 IENSVRVFHSMPV--------------------------------KDVLTWSSMIIGLAN 281
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAF 253
+AL LF +M+ EG+ P+E + VL +C+ L + G + + + +T
Sbjct: 282 HGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQ 341
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMI 290
++D+ + G +EEA + D V W ++
Sbjct: 342 HYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALL 379
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 87/209 (41%), Gaps = 32/209 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H V ++ D+ +G +LI Y + ++ +F MP +DV +W++++
Sbjct: 221 VGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLA 280
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
+ + L LF +++ EG+ +++T + + +C L + GK + V G+ +
Sbjct: 281 NHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKV 340
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ + + ++EA +L +M +
Sbjct: 341 QHYGCMVDLLGRSGHIEEAKQLIRDMP-------------------------------FE 369
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKM 208
D V+WR+++ C K E A E K+
Sbjct: 370 PDAVIWRALLGACRIYKNVEVAEEAMAKL 398
>gi|225424928|ref|XP_002270695.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02750
[Vitis vinifera]
gi|296086418|emb|CBI32007.3| unnamed protein product [Vitis vinifera]
Length = 617
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 161/465 (34%), Positives = 251/465 (53%), Gaps = 8/465 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H K ++SDIYV +++ Y A+ +FD++ ++V S+N +S
Sbjct: 153 VHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGA 212
Query: 65 SGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
V +FK L+ G V + +TLV + SAC++L + +G+ +H K+ + + +
Sbjct: 213 PHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGT 272
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI----VD 179
AL+ MY+KC A +F E+ RN+V+ N +I G + D+A E+F+++ ++
Sbjct: 273 ALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLE 332
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D W +M+ G + Q EA + F KM GV + + S+L ACS+LS LQ G+ +
Sbjct: 333 PDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEI 392
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF--YKTDCKDVVTWTTMIEGLANYG 297
H ++ NI D F+ TALIDMY KCG A F ++ D W MI G G
Sbjct: 393 HGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNG 452
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
A +F QM+ + ++PN AT VS+L+ C H+G I G QLF+ M Y + PT EHF
Sbjct: 453 KYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSEHF 512
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL R+G L +A+E I MP E + +LL AC +S+ LG+++A + +L
Sbjct: 513 GCMVDLLGRSGRLKEAQELIHEMP-EASVSVFASLLGACRHHSDSALGEEMAKKLSELEP 571
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Q +V+LSN YA++G W +V R M + +K PG S I +
Sbjct: 572 QDPTPFVILSNIYAVQGRWGDVERVREMMNDRGLKKPPGCSSIGV 616
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 177/347 (51%), Gaps = 41/347 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH + KT DIY +L Y ++ L + A +F++MP R++ S N +S
Sbjct: 52 GQILHTQLIKTGFHLDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTIS---G 108
Query: 62 FSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
FS +G E L FKQ+ + +T+ + ACA +E VHC A K+G+E
Sbjct: 109 FSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACASVE---LDGQVHCLAIKLGVESD 165
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + A++ MY+ C E+ A ++FD++ +N+VS N I+G + L +VF +++
Sbjct: 166 IYVATAVVTMYSNCGELVLAKKVFDQI-LDKNVVSYNAFISGLLQNGAPHLVFDVFKDLL 224
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+ G P+ +VS+LSACS L +++GR
Sbjct: 225 ESS------------------------------GEVPNSVTLVSILSACSKLLYIRFGRQ 254
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK-TDCKDVVTWTTMIEGLANYG 297
+H +++ I D V TAL+DMYSKCG A F + + +++VTW +MI G+ G
Sbjct: 255 IHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNG 314
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
+ A+ +F Q+E +G++P+ AT+ ++++ G + E + F +M
Sbjct: 315 QSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKM 361
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 148/342 (43%), Gaps = 41/342 (11%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
E L L+ +L ++ K T L A A+L G+ +H K G + AL
Sbjct: 16 EALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAATALA 75
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
MY K + AL++F+EM RN+ SLN+ I+G+ +R +
Sbjct: 76 DMYMKLHLLSYALKVFEEM-PHRNLPSLNVTISGF--------SRNGYF----------- 115
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
EAL FK++ P+ + SVL AC+S ++ VH ++
Sbjct: 116 ------------REALGAFKQVGLGNFRPNSVTIASVLPACAS---VELDGQVHCLAIKL 160
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ D +V TA++ MYS CG L A F + K+VV++ I GL G + VF
Sbjct: 161 GVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVF 220
Query: 307 YQ-MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDL 363
+E G PN T VS+L+AC I G Q+ G V +++ + V LVD+
Sbjct: 221 KDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQIH---GLVVKIEINFDTMVGTALVDM 277
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
S+ G + A + +++ ++++ + + D+
Sbjct: 278 YSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIA 319
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 166/463 (35%), Positives = 246/463 (53%), Gaps = 42/463 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-N 60
GK +H H+ + ++V N+L++ Y + L +A LFD+MP R+V SW T++S Y N
Sbjct: 74 GKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSN 133
Query: 61 DFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+D + LIL + EG+ + T + AC L L + +HC K GLE +
Sbjct: 134 KLNDKALKCLIL---MFREGVRPNMFTYSSVLRACDGLPNL---RQLHCGIIKTGLESDV 187
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ +AL+ +Y+K ++D AL VFDE+
Sbjct: 188 FVRSALIDVYSKWSDLDNAL--------------------------------GVFDEMPT 215
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D+V+W S++ G + EAL LFK+M G D+ + SVL AC+ L+ L+ GR V
Sbjct: 216 RDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQV 275
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +L+ QD + ALIDMY KCGSLE+A F + KDV++W+TM+ GLA G
Sbjct: 276 HVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYS 333
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+AL +F M+ G +PN T + VL AC H+GL+ +G FR M ++ V P EH+ C
Sbjct: 334 RQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGC 393
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
L+DLL RAG L +A + I M E ++++ LL AC + DL A +++L +
Sbjct: 394 LIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPED 453
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+LLSN YA W +VAE R+ M RK PG S I++
Sbjct: 454 AGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEV 496
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 160/356 (44%), Gaps = 43/356 (12%)
Query: 43 KMPFRDVGSWNTLMSIYNDFS---DSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99
K P R V + L++ + +F D + + G+ AD IT L C+
Sbjct: 11 KPPLRYVADPSPLVNEFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGA 70
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
+ GK VH + G E + + N LL MY K ++EA LFDEM RN+VS +I+
Sbjct: 71 VQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEM-PERNVVSWTTMIS 129
Query: 160 GYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
Y + K ++AL+ M EGV P+
Sbjct: 130 AYSN--------------------------------KLNDKALKCLILMFREGVRPNMFT 157
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279
SVL AC L NL R +H I++ + D FV++ALID+YSK L+ AL F +
Sbjct: 158 YSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMP 214
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339
+D+V W ++I G A GNEAL +F +M+R G ++AT SVL AC L+ G Q
Sbjct: 215 TRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQ 274
Query: 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ V + + L+D+ + G L A M +D IS+ +++
Sbjct: 275 VHVH---VLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKD-VISWSTMVAG 326
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 15/241 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H HV K D D+ + N+LI Y + DA F +M +DV SW+T+++
Sbjct: 271 LGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLA 328
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
S + L LF+ + G + IT++ + AC+ + G K+ G++
Sbjct: 329 QNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGR 388
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
L+ + + +DEA++L EM + V+ L+ VDLA +I++
Sbjct: 389 EHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIE 448
Query: 180 ---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV--TP-------DEEVMVSVLSAC 227
+D + + + ++ E+ E+ K M + G+ TP D+++ V +L
Sbjct: 449 LEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDT 508
Query: 228 S 228
S
Sbjct: 509 S 509
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 249/464 (53%), Gaps = 4/464 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF---YGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
K +HA + KT L D Y + F A+++FD D WN ++ +
Sbjct: 31 KQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGF 90
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ + L+L+++++ + T L AC+ L +H TK+G E +
Sbjct: 91 SCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDV 150
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N+L+ YA A LFD + + VS N +I GY+ +D+A +F ++ +
Sbjct: 151 YAVNSLINSYAVTGNFKLAHLLFDRIPEPDD-VSWNSVIKGYVKAGKMDIALTLFRKMAE 209
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K+ + W +M+ G V+A +EAL+LF +M + V PD + + LSAC+ L L+ G+ +
Sbjct: 210 KNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWI 269
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ + I D+ + LIDMY+KCG +EEAL F K V WT +I G A +G G
Sbjct: 270 HSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHG 329
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA+ F +M++ GIKPN TF +VL AC ++GL+ EG +F M Y ++PTIEH+ C
Sbjct: 330 REAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGC 389
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL RAGLL +A+ FI+ MP + + + ALL AC + +LG+++ ++ +
Sbjct: 390 IVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYH 449
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YV +N +A++ W + AE RR MKE K PG S I L+
Sbjct: 450 GGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLE 493
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 100/234 (42%), Gaps = 12/234 (5%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+++ KT + D +G LI Y + +A +F + + V +W L+S Y
Sbjct: 266 GKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAY 325
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLN 120
E + F ++ GI + IT + +AC+ + GK + + L+ +
Sbjct: 326 HGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIE 385
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++ + + +DEA R EM + N V L+ + ++L E+ + ++
Sbjct: 386 HYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAI 445
Query: 181 DIVLWRSMMHGC---VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
D +H K+ ++A E + M ++G V+ + CS++S
Sbjct: 446 DPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQG--------VAKVPGCSTIS 491
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 165/463 (35%), Positives = 240/463 (51%), Gaps = 33/463 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH + K + ++ + N L+ Y + A +F+ M R V SW ++++ Y
Sbjct: 269 LGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYA 328
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S + LF ++ EGI D T+ + ACA L GK VH Y + ++ L
Sbjct: 329 REGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLF 388
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC M +A VF E+ K
Sbjct: 389 VSNALMDMYAKCGSMGDA--------------------------------HSVFSEMQVK 416
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIV W +M+ G K P EAL LF +M P+ M +L AC+SL+ L+ G+ +H
Sbjct: 417 DIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIH 475
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
IL+N + D V AL+DMY KCG+L A + F KD+V+WT MI G +G G+
Sbjct: 476 GHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGS 535
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EA+ F +M GI+P+E +F+S+L AC HSGL+ EG F M ++P EH+ C+
Sbjct: 536 EAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACI 595
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL+RAG L +A +FIK+MP E + ALL C Y + L +KVA ++ +L ++
Sbjct: 596 VDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENT 655
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVLL+N YA W EV + R + RK PG S I++K
Sbjct: 656 GYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIK 698
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/445 (26%), Positives = 197/445 (44%), Gaps = 88/445 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+ + ++ D +G+ L+ Y + R +FDK+ V WN LM+ Y
Sbjct: 120 GRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAK 179
Query: 62 FSDSGEVLILFK------------------------------------------------ 73
+ E L LFK
Sbjct: 180 IGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLF 239
Query: 74 -QLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKC 132
Q++ GI D T+V + + C+ L G+ +H YA K L + N LL MY+K
Sbjct: 240 EQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKS 299
Query: 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC 192
++ A+++F+ MG R++VS +I GY ARE ++
Sbjct: 300 GNLNSAIQVFETMG-ERSVVSWTSMIAGY--------AREGLSDM--------------- 335
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252
++ LF +M EG++PD + ++L AC+ L+ G+ VH +I +N + D
Sbjct: 336 --------SVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDL 387
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
FV AL+DMY+KCGS+ +A F + KD+V+W TMI G + L NEAL +F +M+
Sbjct: 388 FVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYN 447
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLL 370
KPN T +L AC + G ++ G + R +++ V LVD+ + G L
Sbjct: 448 S-KPNSITMACILPACASLAALERGQEIH---GHILRNGFSLDRHVANALVDMYLKCGAL 503
Query: 371 YQAEEFIKIMPAEDKFISYKALLSA 395
A ++P +D +S+ +++
Sbjct: 504 GLARLLFDMIPEKD-LVSWTVMIAG 527
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 178/343 (51%), Gaps = 24/343 (6%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T + CA L+ + G+ +H +E + + L+ MY C ++ E R+FD++
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162
Query: 146 GSRRNIVSLNILINGY------------------IDMELVDLAREVFDEIVDKDIVLWRS 187
+ + + N+L+NGY + + V+ AR++FDE+ D+D++ W S
Sbjct: 163 ANEK-VFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNS 221
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247
M+ G V E+ L+LF++M+ G+ D MVSV++ CS+ L GR +H + ++ +
Sbjct: 222 MISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKAS 281
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
++ + L+DMYSK G+L A+ F + VV+WT+MI G A GL + ++R+F+
Sbjct: 282 FGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFH 341
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367
+ME++GI P+ T ++L AC +GL+ G + + ++Q + L+D+ ++
Sbjct: 342 EMEKEGISPDIFTITTILHACACTGLLENGKDVHNYI-KENKMQSDLFVSNALMDMYAKC 400
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
G + A M +D +S+ ++ YS+ L + N
Sbjct: 401 GSMGDAHSVFSEMQVKD-IVSWNTMIGG---YSKNSLPNEALN 439
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 242/462 (52%), Gaps = 32/462 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + ++ L D+ +GN+LI+ Y R DA +F + R+V SW ++ +
Sbjct: 605 LGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFA 664
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D + + LF Q+ +G K T + AC L GK V + G E
Sbjct: 665 DQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTG 724
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ Y+K M +A R+VFD++ ++
Sbjct: 725 VGNALISAYSKSGSMTDA--------------------------------RKVFDKMPNR 752
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DI+ W M+ G + AL+ +M ++GV ++ VS+L+ACSS S L+ G+ VH
Sbjct: 753 DIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVH 812
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I++ + D V ALI MY+KCGSLEEA F K+VVTW MI A +GL +
Sbjct: 813 AEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLAS 872
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL F M+++GIKP+ +TF S+L+AC HSGL+ EG ++F + + + PTIEH+ CL
Sbjct: 873 KALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCL 932
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
V LL RAG +AE I MP ++ LL AC + L + ANN +KL ++
Sbjct: 933 VGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNP 992
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA G W +VA+ RR M+ RK+PG S I++
Sbjct: 993 AVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEV 1034
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/462 (29%), Positives = 230/462 (49%), Gaps = 48/462 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+H+++ SD+ +GNSLI Y R AR LF+ MP RD+ SWN +++ Y
Sbjct: 404 GELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYAR 463
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D GE + L+KQ+ EG+ ++T + L SAC GK +H + G++ ++
Sbjct: 464 REDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHL 523
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY +C + EA +F+ G+R +D
Sbjct: 524 ANALMNMYRRCGSIMEAQNVFE--GTRA------------------------------RD 551
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
I+ W SM+ G + E A +LF +M EG+ PD+ SVL C + L+ GR +H
Sbjct: 552 IISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHM 611
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I+++ + D + ALI+MY +CGSL++A F+ ++V++WT MI G A+ G +
Sbjct: 612 LIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRK 671
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR-MGGVYRVQPTIEHFVCL 360
A +F+QM+ G KP ++TF S+L AC S + EG ++ + Y + + + L
Sbjct: 672 AFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN--AL 729
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+ S++G + A + MP D +S+ +++ Y++ LG ++ Q
Sbjct: 730 ISAYSKSGSMTDARKVFDKMPNRD-IMSWNKMIAG---YAQNGLG----GTALQFAYQMQ 781
Query: 421 EAYVLLSNFYALE-----GHWTEVAEARRNMKELQTRKKPGN 457
E V+L+ F + ++ + E +R E+ RK G+
Sbjct: 782 EQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGD 823
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 188/393 (47%), Gaps = 34/393 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HA + + + DI++ N LI+ Y + +DA +F KMP RDV SWN+L+S Y
Sbjct: 102 KRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQ 161
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ LF+++ G + KIT + + +AC +L YGK +H + G + ++
Sbjct: 162 GFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQ 221
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N+LL MY KC+++ A ++F + RR++VS N ++ Y V
Sbjct: 222 NSLLNMYGKCEDLPSARQVFSGI-YRRDVVSYNTMLGLYAQKAYV--------------- 265
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
EE + LF +M EG+ PD+ +++L A ++ S L G+ +H+
Sbjct: 266 ----------------EECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKL 309
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+ + D V TAL M+ +CG + A +DVV + +I LA +G EA
Sbjct: 310 AVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEA 369
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
+YQM G+ N T++SVL AC S + G + + V ++ L+
Sbjct: 370 FEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGH-SSDVQIGNSLIS 428
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ +R G L +A E MP D IS+ A+++
Sbjct: 429 MYARCGDLPRARELFNTMPKRD-LISWNAIIAG 460
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/418 (26%), Positives = 195/418 (46%), Gaps = 40/418 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+ + + D V NSL++ YG+ AR +F + RDV S+NT++ +Y
Sbjct: 202 GKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQ 261
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + LF Q+ EGI DK+T + L A L GK +H A GL + +
Sbjct: 262 KAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRV 321
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL M+ +C + V A++ + D+D
Sbjct: 322 GTALATMFVRCGD--------------------------------VAGAKQALEAFADRD 349
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V++ +++ + EEA E + +M +GV + +SVL+ACS+ L G L+H
Sbjct: 350 VVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHS 409
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I + + D + +LI MY++CG L A F +D+++W +I G A E
Sbjct: 410 HISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGE 469
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMGGVYRVQPTIEHFV 358
A++++ QM+ +G+KP TF+ +L+AC +S ++G + R G ++
Sbjct: 470 AMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSG----IKSNGHLAN 525
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L+++ R G + +A+ + A D IS+ ++++ + ++ K+ M K G
Sbjct: 526 ALMNMYRRCGSIMEAQNVFEGTRARD-IISWNSMIAGHAQHGSYEAAYKLFLEMKKEG 582
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 155/323 (47%), Gaps = 36/323 (11%)
Query: 133 KEMDEALRLFDEM---GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMM 189
+ + EA R+ +M G +I N+LIN Y+ V A +VF ++ +D++ W S++
Sbjct: 96 RSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLI 155
Query: 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249
+ ++A +LF++M G P + +S+L+AC S + L+YG+ +H I++
Sbjct: 156 SCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQ 215
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
+D V+ +L++MY KC L A F +DVV++ TM+ A E + +F QM
Sbjct: 216 RDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQM 275
Query: 310 ERKGIKPNEATFVSVLAACRHSGLITEG----------------------CQLFRRMGGV 347
+GI P++ T++++L A ++ EG +F R G V
Sbjct: 276 SSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDV 335
Query: 348 YRVQPTIEHFV--------CLVDLLSRAGLLYQAEEFIKIMPAEDKFI---SYKALLSAC 396
+ +E F L+ L++ G +A E M ++ + +Y ++L+AC
Sbjct: 336 AGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNAC 395
Query: 397 ITYSEFDLGKKVANNMMKLGNQS 419
T G+ + +++ ++G+ S
Sbjct: 396 STSKALGAGELIHSHISEVGHSS 418
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 61/108 (56%)
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC 280
V ++ C+ +L + +H +++ + D F+ LI+MY KC S+ +A F K
Sbjct: 86 VDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPR 145
Query: 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
+DV++W ++I A G +A ++F +M+ G P++ T++S+L AC
Sbjct: 146 RDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTAC 193
>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 153/463 (33%), Positives = 243/463 (52%), Gaps = 33/463 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H ++ + + D N LI Y + A+ +FD +D +WN+L++ Y
Sbjct: 340 VGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYT 399
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L FK + E D +T V+L S ++L ++ G+ +HC K G E L
Sbjct: 400 QSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELI 458
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+LL +YAKC EMD+ L++F M +
Sbjct: 459 IGNSLLDVYAKCGEMDDLLKVFSYMSAH-------------------------------- 486
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DI+ W +++ V ++ +M EG+ PDE ++ +L CS L+ + G+ +H
Sbjct: 487 DIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIH 546
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I ++ + + ALI+MYSKCGSLE + F KDVVTWT +I YG G
Sbjct: 547 GYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGK 606
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL+ F ME G+ P+ F++ + AC HSG++ EG + F RM Y ++P +EH+ C+
Sbjct: 607 KALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACV 666
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL+R+GLL QAEEFI MP + + ALLSAC ++ ++V+ +++L +
Sbjct: 667 VDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDT 726
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVL+SN YA G W +V R +MK +K+PG+S I+++
Sbjct: 727 GYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQ 769
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/431 (28%), Positives = 199/431 (46%), Gaps = 48/431 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H H + +SD+Y+GN+LI Y R +AR +F++M RD SWN+L+S Y
Sbjct: 139 LGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYC 198
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L ++ + G+V D T+ + AC L + G VH K+G+ +
Sbjct: 199 SNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVI 258
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N LL MY K + + EA R+F +M K
Sbjct: 259 IGNGLLSMYFKFERLREARRVFSKMAV--------------------------------K 286
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V W +M+ G + + E +++LF MID G PD + S + AC +LQ G+ VH
Sbjct: 287 DSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVGKFVH 345
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++++ + D LIDMY+KCG L A F T CKD VTW ++I G G
Sbjct: 346 KYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYK 405
Query: 301 EALRVF--YQMERKGIKPNEATFVSVLAACRHSGLITEG----CQLFRRMGGVYRVQPTI 354
E L F +MER KP+ TFV +L+ I +G C + + + + +
Sbjct: 406 EGLESFKMMKMER---KPDSVTFVLLLSIFSQLADINQGRGIHCDVIK-----FGFEAEL 457
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
L+D+ ++ G + + M A D IS+ ++++ + + + +G ++ N M
Sbjct: 458 IIGNSLLDVYAKCGEMDDLLKVFSYMSAHD-IISWNTVIASSVHFDDCTVGFQMINEMRT 516
Query: 415 LGNQSHEAYVL 425
G EA VL
Sbjct: 517 EGLMPDEATVL 527
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/394 (25%), Positives = 178/394 (45%), Gaps = 36/394 (9%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM-PFRDVGSWNTLMSIYND 61
+ +H+ + + L + LI Y ++ + +F + P +V WN+++
Sbjct: 39 RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L + ++ + + D T + ++CAR+ L G VH +A ++G E L +
Sbjct: 99 NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY++ ++D+ D AR VF+E+ ++D
Sbjct: 159 GNALIDMYSR-----------------------------FVDL---DNARYVFEEMSNRD 186
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W S++ G E+AL+++ K G+ PD M SVL AC SL ++ G VH
Sbjct: 187 SVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHG 246
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I + I D + L+ MY K L EA F K KD VTW TMI G A G
Sbjct: 247 VIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEA 306
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
++++F M G P+ + S + AC SG + G + + + G T+ + L+
Sbjct: 307 SVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNI-LI 364
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
D+ ++ G L A+E +D +++ +L++
Sbjct: 365 DMYAKCGDLLAAQEVFDTTKCKDS-VTWNSLING 397
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/425 (35%), Positives = 241/425 (56%), Gaps = 4/425 (0%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99
+F ++P + +WN+++ ++ + + +F +++ G+ D +T + A ARL +
Sbjct: 61 IFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFVAKAVARLSE 120
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
L VHC K GL + + N+L+ MY C ++ A ++FDEM RN VS N +++
Sbjct: 121 LRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEM-LIRNSVSWNAMLD 179
Query: 160 GYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
GY +D A +VF + D+D+V W SM+ GCVK + AL +F++M G +
Sbjct: 180 GYAKCGDLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANXVT 239
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF--YK 277
MVSVL AC+ L L+ GR +H++++ N + ++T+L+DMY+KCG++EEA+ F
Sbjct: 240 MVSVLCACAHLGALEXGRXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVP 299
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
D DV+ W T+I GLA +GL E+L +F +M+ GI P+E T++ + +AC H GL+ E
Sbjct: 300 MDQTDVLMWNTIIGGLATHGLVXESLELFKEMQVLGIVPDEITYLCLFSACAHGGLVHEA 359
Query: 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
F+ +G V P EH+ C+VD+LSRAG L +A +FI MP E ALL+ C+
Sbjct: 360 WHFFKSLGKQGMV-PKSEHYACMVDVLSRAGQLAEAYDFIAQMPMEPTASMLGALLNGCM 418
Query: 398 TYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGN 457
+ FDL ++V +++L Y+ LSN YA W R M+ +K PG
Sbjct: 419 NHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNARMMREAMERRGVKKSPGF 478
Query: 458 SIIDL 462
S +++
Sbjct: 479 SFVEV 483
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 127/305 (41%), Gaps = 73/305 (23%)
Query: 4 GLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFS 63
+H + K L D ++ NSLIH YG AR +FD+M R+ SWN ++ Y
Sbjct: 126 AVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCG 185
Query: 64 D-------------------------------SGEVLILFKQLIFEGIVADKITLVILFS 92
D G L +F+++ G A+ +T+V +
Sbjct: 186 DLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANXVTMVSVLC 245
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
ACA L L G+ +H Y + + L + +L+ MYAKC ++EA+ +F R +
Sbjct: 246 ACAHLGALEXGRXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVF------RGV- 298
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
+ D+++W +++ G E+LELFK+M G
Sbjct: 299 -----------------------PMDQTDVLMWNTIIGGLATHGLVXESLELFKEMQVLG 335
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVH------RFILQNNITQDAFVKTALIDMYSKCG 266
+ PDE + + SAC+ +G LVH + + + + + ++D+ S+ G
Sbjct: 336 IVPDEITYLCLFSACA------HGGLVHEAWHFFKSLGKQGMVPKSEHYACMVDVLSRAG 389
Query: 267 SLEEA 271
L EA
Sbjct: 390 QLAEA 394
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 108/252 (42%), Gaps = 40/252 (15%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
+D + +F +I I W S++ G K K P ++ +F KM+ GV PD V A
Sbjct: 55 IDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFVAKA 114
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS----------------------- 263
+ LS L+ VH I + + D F+ +LI MY
Sbjct: 115 VARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSW 174
Query: 264 --------KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
KCG L+ A F +DVV+W++MI+G G AL +F +M G K
Sbjct: 175 NAMLDGYAKCGDLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPK 234
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLY 371
N T VSVL AC H G + G + + Y V T+ + L+D+ ++ G +
Sbjct: 235 ANXVTMVSVLCACAHLGALEXGRXMHQ-----YMVDNTMRFTLVLRTSLMDMYAKCGAIE 289
Query: 372 QAEEFIKIMPAE 383
+A + +P +
Sbjct: 290 EAIAVFRGVPMD 301
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 247/464 (53%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H KT +SD+YV LI Y + AR + + + +DV SW ++++ Y
Sbjct: 363 LGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYV 422
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L FK + GI D I L SACA ++ + G+ +H G ++
Sbjct: 423 QHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVS 482
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ +YA+C EA LF+ I K
Sbjct: 483 IWNALVNLYARCGRSKEAFSLFEA--------------------------------IEHK 510
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D + W M+ G ++ EEALE+F KM GV + VS +SA ++L++++ G+ +H
Sbjct: 511 DKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIH 570
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ T + V ALI +Y KCGS+E+A + F++ ++ V+W T+I + +G G
Sbjct: 571 ATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGL 630
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F QM+++G+KPN+ TF+ VLAAC H GL+ EG F+ M + + P +H+ C+
Sbjct: 631 EALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACV 690
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L RAG L +A +F++ MP + ++ LLSAC + ++G+ A +++L
Sbjct: 691 VDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDS 750
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+YVLLSN YA+ G W R+ MK+ RK+PG S I++K+
Sbjct: 751 ASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKN 794
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/467 (26%), Positives = 221/467 (47%), Gaps = 77/467 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA V K S+ VGN+LI Y R + A +F +MP+ D ++NTL+S +
Sbjct: 162 GRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQ 221
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL--EYML 119
+ L +F+++ G D +T+ L +ACA + L+ GK +H Y K G+ +Y++
Sbjct: 222 CGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYII 281
Query: 120 N-----------------------------MENALLLMYAKCKEMDEALRLFDEM----- 145
+ N +L+ Y + ++ ++ LF +M
Sbjct: 282 EGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGV 341
Query: 146 ----------------------GSRRNIVSL-----------NILINGYIDMELVDLARE 172
G + +++S+ +LI+ Y +D AR
Sbjct: 342 RPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARR 401
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
+ + + KD+V W SM+ G V+ + +EALE FK M G+ PD + S +SAC+ +
Sbjct: 402 ILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKA 461
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
++ G+ +H + + + D + AL+++Y++CG +EA F + KD +TW M+ G
Sbjct: 462 MRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSG 521
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
A GL EAL VF +M + G+K N TFVS ++A + I +G Q+ V +
Sbjct: 522 FAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIH---ATVIKTGC 578
Query: 353 TIEHFV--CLVDLLSRAGLLYQAE-EFIKIMPAEDKFISYKALLSAC 396
T E V L+ L + G + A+ +F ++ +E +S+ ++++C
Sbjct: 579 TSETEVANALISLYGKCGSIEDAKMQFFEM--SERNHVSWNTIITSC 623
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/399 (26%), Positives = 184/399 (46%), Gaps = 42/399 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA L D GN LI Y + L AR +F+++ RD SW ++S Y
Sbjct: 64 IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E + L+ Q+ G+V L + SAC + G+ VH K G
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQG---------- 173
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
C E V N LI Y+ + LA VF E+ D V
Sbjct: 174 ------SCSE----------------TVVGNALIALYLRFGSLSLAERVFSEMPYCDRVT 211
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
+ +++ + E ALE+F++M G TPD + S+L+AC+S+ +L G+ +H ++L
Sbjct: 212 FNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLL 271
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ ++ D ++ +L+D+Y KCG + EAL F D +VV W M+ ++
Sbjct: 272 KAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFD 331
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CL 360
+F QM G++PNE T+ +L C ++G I G Q+ + ++ E + L
Sbjct: 332 LFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIH-----LLSIKTGFESDMYVSGVL 386
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
+D+ S+ G L +A ++++ A+D +S+ ++++ + +
Sbjct: 387 IDMYSKYGWLDKARRILEVLEAKD-VVSWTSMIAGYVQH 424
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 7/207 (3%)
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC-SSLSNLQYGRLVHRFILQNNIT 249
G + + PE+ L LF + + L C S+ + ++H + +
Sbjct: 15 GFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPLVPVIHAKAITCGLG 74
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
+D LID+Y+K G ++ A F + +D V+W M+ G A GLG EA+ +++QM
Sbjct: 75 EDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQM 134
Query: 310 ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRA 367
G+ P SVL+AC + L +G + + VY+ E V L+ L R
Sbjct: 135 HCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQ---VYKQGSCSETVVGNALIALYLRF 191
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLS 394
G L AE MP D+ +++ L+S
Sbjct: 192 GSLSLAERVFSEMPYCDR-VTFNTLIS 217
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/417 (36%), Positives = 236/417 (56%), Gaps = 2/417 (0%)
Query: 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH 107
+V SWN++++ DS E L F + + ++ T +C+ L LH G+ H
Sbjct: 40 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 99
Query: 108 CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
A G E L + +AL+ MY+KC E+ +A LFDE+ S RNIVS +I GY+ +
Sbjct: 100 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEI-SHRNIVSWTSMITGYVQNDDA 158
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSA 226
A VFD + ++D++ W S++ + E++E+F +M+ +G + + + +VL A
Sbjct: 159 HRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLA 218
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C+ + + G+ +H +++ + + FV T++IDMY KCG +E A F + K+V +W
Sbjct: 219 CAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSW 278
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
+ M+ G +G EAL VFY+M G+KPN TFVSVLAAC H+GL+ EG F+ M
Sbjct: 279 SAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSH 338
Query: 347 VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406
+ V+P +EH+ C+VDLL RAG L +A + IK M F+ + ALL AC + DLG+
Sbjct: 339 EFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGE 398
Query: 407 KVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A + +L ++ YVLLSN YA G W +V R MK K PG S++D+K
Sbjct: 399 ISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIK 455
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 147/352 (41%), Gaps = 77/352 (21%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDK------------------ 43
G+ H + D++V ++L+ Y + DAR LFD+
Sbjct: 95 GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQ 154
Query: 44 -------------MPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG-IVADKITLVI 89
M RDV SWN+++++Y S E + +F +++ +G I + +TL
Sbjct: 155 NDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSA 214
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ ACA GK +H K+GLE + + +++ MY KC +++ A + FD M +
Sbjct: 215 VLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRM-REK 273
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N+ S + ++ GY MHG K EALE+F +M
Sbjct: 274 NVKSWSAMVAGY--------------------------GMHGHAK-----EALEVFYEMN 302
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-----RLVHRFILQNNITQDAFVKTALIDMYSK 264
GV P+ VSVL+ACS L+ G + H F ++ + ++D+ +
Sbjct: 303 MAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYG----CMVDLLGR 358
Query: 265 CGSLEEALVTFYKTDCK-DVVTWTTMIEGL---ANYGLGNEALRVFYQMERK 312
G L+EA + D V W ++ N LG + R ++++ K
Sbjct: 359 AGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPK 410
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 13/184 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V K L+S+++VG S+I Y + AR FD+M ++V SW+ +++ Y
Sbjct: 227 LGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYG 286
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTV-HCYATKVGL 115
+ E L +F ++ G+ + IT V + +AC+ E H+ K + H + + G+
Sbjct: 287 MHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGV 346
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL----AR 171
E+ M + L + + EA L M R + V L+ + VDL AR
Sbjct: 347 EHYGCMVDLL----GRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISAR 402
Query: 172 EVFD 175
++F+
Sbjct: 403 KLFE 406
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 17/188 (9%)
Query: 261 MYSKCGSLEEALVTFYK--TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
+Y + S L T + D +V +W ++I LA G EALR F M + +KPN
Sbjct: 17 IYRRRYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNR 76
Query: 319 ATFVSVLAACR-----HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
+TF + +C HSG L ++ +P + LVD+ S+ G L A
Sbjct: 77 STFPCAIKSCSALLDLHSGRQAHQQAL------IFGFEPDLFVSSALVDMYSKCGELRDA 130
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE 433
+ + +S+ ++++ + + +V + M + S + + + YA
Sbjct: 131 RTLFDEI-SHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAV---YAQN 186
Query: 434 GHWTEVAE 441
G TE E
Sbjct: 187 GMSTESME 194
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/463 (33%), Positives = 243/463 (52%), Gaps = 33/463 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H ++ + + D N LI Y + A+ +FD +D +WN+L++ Y
Sbjct: 340 VGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYT 399
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L FK + E D +T V+L S ++L ++ G+ +HC K G E L
Sbjct: 400 QSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELI 458
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+LL +YAKC EMD+ L++F M +
Sbjct: 459 IGNSLLDVYAKCGEMDDLLKVFSYMSAH-------------------------------- 486
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DI+ W +++ V ++ +M EG+ PDE ++ +L CS L+ + G+ +H
Sbjct: 487 DIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIH 546
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I ++ + + ALI+MYSKCGSLE + F KDVVTWT +I YG G
Sbjct: 547 GYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGK 606
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL+ F ME G+ P+ F++ + AC HSG++ EG + F RM Y ++P +EH+ C+
Sbjct: 607 KALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACV 666
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL+R+GLL QAEEFI MP + + ALLSAC ++ ++V+ +++L +
Sbjct: 667 VDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDT 726
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVL+SN YA G W +V R +MK +K+PG+S I+++
Sbjct: 727 GYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQ 769
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 124/431 (28%), Positives = 199/431 (46%), Gaps = 48/431 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H H + +SD+Y+GN+LI Y R +AR +F++M RD SWN+L+S Y
Sbjct: 139 LGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYC 198
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L ++ + G+V D T+ + AC L + G VH K+G+ +
Sbjct: 199 SNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVI 258
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N LL MY K + + EA R+F +M K
Sbjct: 259 IGNGLLSMYFKFERLREARRVFSKMAV--------------------------------K 286
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V W +M+ G + + E +++LF MID G PD + S + AC +LQ G+ VH
Sbjct: 287 DSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVGKFVH 345
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++++ + D LIDMY+KCG L A F T CKD VTW ++I G G
Sbjct: 346 KYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYK 405
Query: 301 EALRVF--YQMERKGIKPNEATFVSVLAACRHSGLITEG----CQLFRRMGGVYRVQPTI 354
E L F +MER KP+ TFV +L+ I +G C + + + + +
Sbjct: 406 EGLESFKMMKMER---KPDSVTFVLLLSIFSQLADINQGRGIHCDVIK-----FGFEAEL 457
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
L+D+ ++ G + + M A D IS+ ++++ + + + +G ++ N M
Sbjct: 458 IIGNSLLDVYAKCGEMDDLLKVFSYMSAHD-IISWNTVIASSVHFDDCTVGFQMINEMRT 516
Query: 415 LGNQSHEAYVL 425
G EA VL
Sbjct: 517 EGLMPDEATVL 527
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/394 (25%), Positives = 178/394 (45%), Gaps = 36/394 (9%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM-PFRDVGSWNTLMSIYND 61
+ +H+ + + L + LI Y ++ + +F + P +V WN+++
Sbjct: 39 RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L + ++ + + D T + ++CAR+ L G VH +A ++G E L +
Sbjct: 99 NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY++ ++D+ D AR VF+E+ ++D
Sbjct: 159 GNALIDMYSR-----------------------------FVDL---DNARYVFEEMSNRD 186
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W S++ G E+AL+++ K G+ PD M SVL AC SL ++ G VH
Sbjct: 187 SVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHG 246
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I + I D + L+ MY K L EA F K KD VTW TMI G A G
Sbjct: 247 VIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEA 306
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
++++F M G P+ + S + AC SG + G + + + G T+ + L+
Sbjct: 307 SVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNI-LI 364
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
D+ ++ G L A+E +D +++ +L++
Sbjct: 365 DMYAKCGDLLAAQEVFDTTKCKDS-VTWNSLING 397
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 246/462 (53%), Gaps = 33/462 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
++A + K D D+++GN+LI + AR +FD+ PF+D +W L++ Y
Sbjct: 129 IYAQIFKLGFDLDLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWTALINGYVKNDC 188
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLNMEN 123
GE L F ++ D +T+ + A A + +G+ VH + + G ++ + +
Sbjct: 189 PGEALKCFVKMRLRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEAGRVQLDGYVFS 248
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ MY KC ++A + VF+E+ +D+V
Sbjct: 249 ALMDMYFKCGHCEDACK--------------------------------VFNELPHRDVV 276
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W ++ G V++ + ++AL F M+ + V P++ + SVLSAC+ + L GRLVH++I
Sbjct: 277 CWTVLVAGYVQSNKFQDALRAFWDMLSDNVAPNDFTLSSVLSACAQMGALDQGRLVHQYI 336
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
N I + + TAL+DMY+KCGS++EAL F K+V TWT +I GLA +G AL
Sbjct: 337 ECNKINMNVTLGTALVDMYAKCGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGAL 396
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
+F M + GI+PNE TFV VLAAC H G + EG +LF M Y ++P ++H+ C+VD+
Sbjct: 397 NIFCCMLKSGIQPNEVTFVGVLAACSHGGFVEEGKRLFELMKHAYHLKPEMDHYGCMVDM 456
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L RAG L A++ I MP + AL AC+ + F++G+ + N ++ +Y
Sbjct: 457 LGRAGYLEDAKQIIDNMPMKPSPGVLGALFGACLVHKAFEMGEHIGNLLVNQQPNHSGSY 516
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
LL+N Y + +W A+ R+ MK L+ K PG S I++ +
Sbjct: 517 ALLANLYKMCQNWEAAAQVRKLMKGLRVVKAPGYSRIEVDGF 558
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 127/276 (46%), Gaps = 42/276 (15%)
Query: 2 GKGLHA-HVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +H +V + D YV ++L+ Y + DA +F+++P RDV W L++ Y
Sbjct: 227 GRWVHGFYVEAGRVQLDGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYV 286
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + L F ++ + + + TL + SACA++ L G+ VH Y + +
Sbjct: 287 QSNKFQDALRAFWDMLSDNVAPNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMNVT 346
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAKC +DEALR+F+ M +N+ + ++ING
Sbjct: 347 LGTALVDMYAKCGSIDEALRVFENM-PVKNVYTWTVIINGL------------------- 386
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR--- 237
+HG AL +F M+ G+ P+E V VL+ACS ++ G+
Sbjct: 387 -------AVHG-----DALGALNIFCCMLKSGIQPNEVTFVGVLAACSHGGFVEEGKRLF 434
Query: 238 --LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
+ H + L+ + ++DM + G LE+A
Sbjct: 435 ELMKHAYHLKPEMDHYG----CMVDMLGRAGYLEDA 466
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 13/234 (5%)
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
+FD I + L M+ C P +L + K+ +GV PD+ +L S S
Sbjct: 67 LFDTINTPNTRLLNKMIAAC---SHPHISLLCYAKLRQKGVQPDKHTFPLLLKTFSK-SI 122
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
Q +++ I + D F+ ALI ++ G +E A F ++ +D V WT +I G
Sbjct: 123 AQNPFMIYAQIFKLGFDLDLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWTALING 182
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY---- 348
EAL+ F +M + + T S+L R + L+ + R + G Y
Sbjct: 183 YVKNDCPGEALKCFVKMRLRDRSVDAVTVASIL---RAAALVGDA-DFGRWVHGFYVEAG 238
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
RVQ F L+D+ + G A + +P D + + L++ + ++F
Sbjct: 239 RVQLDGYVFSALMDMYFKCGHCEDACKVFNELPHRD-VVCWTVLVAGYVQSNKF 291
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/184 (17%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H ++ ++ ++ +G +L+ Y + +A +F+ MP ++V +W +++
Sbjct: 329 GRLVHQYIECNKINMNVTLGTALVDMYAKCGSIDEALRVFENMPVKNVYTWTVIINGLAV 388
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-----HCYATKVGLE 116
D+ L +F ++ GI +++T V + +AC+ + GK + H Y K ++
Sbjct: 389 HGDALGALNIFCCMLKSGIQPNEVTFVGVLAACSHGGFVEEGKRLFELMKHAYHLKPEMD 448
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ ++ M + +++A ++ D M + + L L + + ++ + +
Sbjct: 449 HY----GCMVDMLGRAGYLEDAKQIIDNMPMKPSPGVLGALFGACLVHKAFEMGEHIGNL 504
Query: 177 IVDK 180
+V++
Sbjct: 505 LVNQ 508
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 160/504 (31%), Positives = 265/504 (52%), Gaps = 45/504 (8%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGR---------MALFTDARVLFDKMPFRDVGSWNTL 55
LH V K+ V N+LI Y + +L +AR LFD+MP RD SW T+
Sbjct: 170 LHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTI 229
Query: 56 MSIY---NDFSDSGEVLI----------------------------LFKQLIFEGIVADK 84
++ Y ND + E L +F+++I I D+
Sbjct: 230 ITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDE 289
Query: 85 ITLVILFSACARLEKLHYGKTVHCYATKV----GLEYMLNMENALLLMYAKCKEMDEALR 140
T + S CA GK +H Y K + + + NAL+ Y KC ++D A
Sbjct: 290 FTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQE 349
Query: 141 LFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
+F++M R++VS NI+++GY+++ +D A+ F+E+ +K+I+ W M+ G + EE
Sbjct: 350 IFNKM-PERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEE 408
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
AL+ F +M +G P + + +CS L +L++GR +H +++ ALI
Sbjct: 409 ALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALIT 468
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
MY++CG ++ A F C D ++W MI L +G G +A+ +F +M ++GI P+ +
Sbjct: 469 MYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRIS 528
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
F++V++AC H+GL+ EG + F M VY V P EH+ ++DLL RAG +A+E ++ M
Sbjct: 529 FLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESM 588
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440
P E ++ALL+ C + DLG + A + +L Q YVLLSN YA+ G W ++A
Sbjct: 589 PFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMA 648
Query: 441 EARRNMKELQTRKKPGNSIIDLKH 464
+ R+ M++ +K+PG S I++++
Sbjct: 649 KVRKLMRDRGVKKEPGCSWIEVEN 672
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 126/494 (25%), Positives = 211/494 (42%), Gaps = 81/494 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ + +HAH+ + ++ N LI Y + + AR LFD++P D+ + TL++ Y+
Sbjct: 31 LARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYS 90
Query: 61 D----------FSDS----------------------GEVLI-LFKQLIFEGIVADKITL 87
FSD+ G I LF + + D T
Sbjct: 91 AAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTF 150
Query: 88 VILFSACARL-EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE---------MDE 137
+ A A + EK + + +HC K G ++ ++ NAL+ Y KC M E
Sbjct: 151 TSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAE 210
Query: 138 ALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ 197
A +LFDEM +R + S +I GY+ +D A+E + K V W +M+ G
Sbjct: 211 ARKLFDEMPNRDEL-SWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGL 269
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN--NITQDAF-- 253
EA E+F+KMI + DE SV+S C++ + G+ +H + L+ N D
Sbjct: 270 YLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMP 329
Query: 254 VKTALIDMYSKCGS-------------------------------LEEALVTFYKTDCKD 282
V ALI Y KCG ++EA F + K+
Sbjct: 330 VNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKN 389
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
+++W MI GLA G EAL+ F +M+ +G +P + F + +C G + G QL
Sbjct: 390 ILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHA 449
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
++ Y + ++ L+ + +R G++ A MP D IS+ A+++A + +
Sbjct: 450 QV-VRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDA-ISWNAMIAALGQHGQG 507
Query: 403 DLGKKVANNMMKLG 416
++ M+K G
Sbjct: 508 TQAIELFEEMLKEG 521
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 154/371 (41%), Gaps = 50/371 (13%)
Query: 90 LFSACARLEKLHY--GKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
L C + Y + VH + G + ++ N L+ +Y+K +++ A LFDE+
Sbjct: 17 LLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEI-P 75
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDE--IVDKDIVLWRSMMHGCVKAKQPEEALELF 205
+ +IV+ LI Y + L+R++F + + +D V + +M+ A+ELF
Sbjct: 76 QPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELF 135
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQ-YGRLVHRFILQNNITQDAFVKTALIDMYSK 264
M + PD SVL A + ++ + + + +H ++++ V ALI Y K
Sbjct: 136 CDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVK 195
Query: 265 CGS---------LEEALVTFYKTDCKDVVTWTT--------------------------- 288
C + + EA F + +D ++WTT
Sbjct: 196 CAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGV 255
Query: 289 ----MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR- 343
MI G A+ GL EA +F +M I+ +E TF SV++ C ++G G ++
Sbjct: 256 AWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYF 315
Query: 344 MGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
+ V P + V L+ + G + A+E MP D +S+ +LS +
Sbjct: 316 LKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERD-LVSWNIILSGYVNVRC 374
Query: 402 FDLGKKVANNM 412
D K N M
Sbjct: 375 MDEAKSFFNEM 385
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHA V + +S + GN+LI Y R + A LF MP D SWN +++
Sbjct: 444 GRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQ 503
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + LF++++ EGI+ D+I+ + + SAC+ H K G +Y +M
Sbjct: 504 HGQGTQAIELFEEMLKEGILPDRISFLTVISACS-----------HAGLVKEGRKYFDSM 552
Query: 122 EN 123
N
Sbjct: 553 HN 554
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 157/460 (34%), Positives = 250/460 (54%), Gaps = 33/460 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GKGLH + K D++ N L++ Y + DA LFD+MP R+ S+ TL+ Y +
Sbjct: 57 GKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAE 116
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + LF +L E ++ ++ T + ACA +E L+ G +HC+ K+GL + +
Sbjct: 117 SVRFLEAIELFVRLHRE-VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFV 175
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ +YAKC M+ ++ LF E R +
Sbjct: 176 SNALMDVYAKCGRMENSMELFAESPHRND------------------------------- 204
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +++ G V+ E+AL LF M++ V E S L AC+SL+ L+ G +H
Sbjct: 205 -VTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHS 263
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ +D V ALIDMY+KCGS+++A + F + +D V+W MI G + +GLG E
Sbjct: 264 LTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGRE 323
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
ALR+F +M+ +KP++ TFV VL+AC ++GL+ +G F M + ++P IEH+ C+V
Sbjct: 324 ALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMV 383
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
LL R G L +A + I +P + + ++ALL AC+ +++ +LG+ A ++++ Q
Sbjct: 384 WLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKA 443
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+VLLSN YA W VA R+NMK +K+PG S I+
Sbjct: 444 THVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIE 483
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 33/273 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H HV K L SD++V N+L+ Y + ++ LF + P R+ +WNT++ +
Sbjct: 156 LGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHV 215
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D + L LF ++ + A ++T ACA L L G +H K + +
Sbjct: 216 QLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIV 275
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC + +A +FD M ++++ VS N +I+GY
Sbjct: 276 VTNALIDMYAKCGSIKDARLVFDLM-NKQDEVSWNAMISGY------------------- 315
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
MHG + EAL +F KM + V PD+ V VLSAC++ L G+
Sbjct: 316 -------SMHGLGR-----EALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYF 363
Query: 241 RFILQNNITQDAFVK-TALIDMYSKCGSLEEAL 272
++Q++ + T ++ + + G L++A+
Sbjct: 364 TSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAV 396
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 213 VTPDE---EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
V+P E + L C G+ +H IL+ D F L++MY K L
Sbjct: 31 VSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLC 90
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
+A F + ++ +++ T+I+G A EA+ +F ++ R+ + PN+ TF SVL AC
Sbjct: 91 DASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHRE-VLPNQFTFASVLQAC 148
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/494 (33%), Positives = 253/494 (51%), Gaps = 33/494 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +H H K ++D V + L Y AR LFD++P V WN ++ Y
Sbjct: 27 AKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAW 86
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L+ ++ G+ +K T + AC+ L + G +H +A GLE + +
Sbjct: 87 NGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFV 146
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD------------- 168
AL+ YAKC + EA RLF M S R++V+ N +I G L D
Sbjct: 147 CTALVDFYAKCGILVEAQRLFSSM-SHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEG 205
Query: 169 -------------------LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
AR++FD + ++ V W +M+ G V + +EAL++F+ M
Sbjct: 206 ICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQ 265
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
G+ PD M+ VL ACS L+ LQ+G H +++ D + ALIDMYSKCG +
Sbjct: 266 LSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKIS 325
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
A F + D D+V+W MI G +GLG EAL +F+ + G+KP++ TF+ +L++C
Sbjct: 326 FAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 385
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
HSGL+ EG F M + + P +EH +C+VD+L RAGL+ +A FI+ MP E +
Sbjct: 386 HSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIW 445
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449
ALLSAC + +LG++V+ + LG +S +VLLSN Y+ G W + A R K+
Sbjct: 446 SALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDW 505
Query: 450 QTRKKPGNSIIDLK 463
+K PG S I++
Sbjct: 506 GLKKIPGCSWIEIN 519
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 6/196 (3%)
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
+L AC +L + +H+ L+N D+ V L +Y C + A F +
Sbjct: 14 LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
V+ W +I A G + A+ +++ M G++PN+ T+ VL AC I +G ++
Sbjct: 74 VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133
Query: 343 RMGGVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYS 400
++ ++ + FVC LVD ++ G+L +A+ M D +++ A+++ C Y
Sbjct: 134 H-AKMFGLESDV--FVCTALVDFYAKCGILVEAQRLFSSMSHRD-VVAWNAMIAGCSLYG 189
Query: 401 EFDLGKKVANNMMKLG 416
D ++ M + G
Sbjct: 190 LCDDAVQLIMQMQEEG 205
>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
Length = 816
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/532 (31%), Positives = 273/532 (51%), Gaps = 71/532 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V K + D+Y+ S IHFY R + A LFD M RD+G+WN ++S +
Sbjct: 158 GRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYL 217
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY---- 117
E L +F ++ F+ + D +T+ L C +L+ + G +H YA K+GLE+
Sbjct: 218 NGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFV 277
Query: 118 ---MLNM------------------------ENALLLMYAKCKEMDEALRLFDEMGS--- 147
++NM N+LL + + K+ AL ++++M S
Sbjct: 278 CNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGV 337
Query: 148 -------------------------------RR-----NIVSLNILINGYIDMELVDLAR 171
RR +I N +I+ Y + +D AR
Sbjct: 338 VPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSAR 397
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSL 230
+VF+ + KD++ W S++ G + EA++++ M G P++ VS+L+A S L
Sbjct: 398 KVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQL 457
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
L+ G H +++N + D FV T L+DMY KCG L +AL FY+ + V+W +I
Sbjct: 458 GALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAII 517
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
+G G +A+++F +M+ +G+KP+ TFVS+L+AC HSGL+ EG F+ M Y +
Sbjct: 518 SCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGI 577
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
+P+++H+ C+VDL RAG L +A F+K MP + ALL AC + +L + V++
Sbjct: 578 RPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSD 637
Query: 411 NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+++K+ +++ YVLLSN YA GHW V E R ++ +K PG S I++
Sbjct: 638 HLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEV 689
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 106/468 (22%), Positives = 198/468 (42%), Gaps = 62/468 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K LHA + + I++ LI+ Y + AR+ FD++ +DV +WN+++S Y
Sbjct: 58 LAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYA 117
Query: 61 DFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ F + + + +D T + AC L+ G+ VHC K+G E +
Sbjct: 118 RIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLKLGFECDV 174
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ + + Y++ V LA +FD ++
Sbjct: 175 YIAASFIHFYSR--------------------------------FGFVSLACNLFDNMMI 202
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+DI W +M+ G + EALE+F +M + V+ D + S+L C L ++ G L+
Sbjct: 203 RDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLI 262
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + ++ + D FV ALI+MY+K G L A F + +D+V+W +++
Sbjct: 263 HVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKP 322
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
AL V+ +M G+ P+ T VS+ + G R + G + H +
Sbjct: 323 VIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSS----RSIHGFVTRRCWFLHDIA 378
Query: 360 L----VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
L +D+ ++ G + A + + +P +D IS+ +L++ YS+ L
Sbjct: 379 LGNAIIDMYAKLGFIDSARKVFEGLPVKD-VISWNSLITG---YSQ-----------NGL 423
Query: 416 GNQSHEAYVLLSNFYAL---EGHWTEVAEARRNMKELQTRKKPGNSII 460
N++ + Y + + +G W + A + L+ K +I
Sbjct: 424 ANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLI 471
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
+ + + +H ++ + TQ F+ LI+ Y+ G + A +TF + KDV TW +MI
Sbjct: 54 TKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMI 113
Query: 291 EGLANYGLGNEALRVFYQ-MERKGIKPNEATFVSVLAAC 328
A G + A+ F + + ++ + TF V+ AC
Sbjct: 114 SAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC 152
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 159/463 (34%), Positives = 242/463 (52%), Gaps = 34/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ H V + LD D +V +SLI Y R DAR +FD++ +D+ SWN+++S Y+
Sbjct: 146 GRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSK 205
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+GE + LF++++ G ++++LV + AC L L G V + + + M
Sbjct: 206 MRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFM 265
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+AL+ MY KC ++ VS AR +FD + KD
Sbjct: 266 GSALIHMYGKCGDL----------------VS----------------ARRIFDSMKKKD 293
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G + EEA++LF+ M PD+ ++ +LSAC+S+ L G+ V
Sbjct: 294 KVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEI 353
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + D +V TAL+DMY+KCGSL+ A FY K+ V+W MI LA +G E
Sbjct: 354 YASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQE 413
Query: 302 ALRVFYQMERKG--IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
AL +F M +G + PN+ TFV VL+AC H+GL+ EG +LF M + + P IEH+ C
Sbjct: 414 ALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSC 473
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDL SRAG L +A +F+ MP + + ALL AC D+ ++V +++L +
Sbjct: 474 MVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSN 533
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YV+ S YA W + A R MK+ K PG S ID+
Sbjct: 534 SGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDI 576
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 123/447 (27%), Positives = 212/447 (47%), Gaps = 47/447 (10%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM-SIYND 61
K +HA + L + I+ NS ++ + F A V F + S+N ++ +
Sbjct: 49 KQIHAQL----LTNSIHKPNSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTA 104
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
++ S L + ++ F G+ + +T LF AC+ L + G+ HC + GL+ ++
Sbjct: 105 WNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHV 164
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
++L+ MYA+C +M +A ++FDE+ S++++VS N +I+GY M
Sbjct: 165 SHSLITMYARCGKMGDARKVFDEI-SQKDLVSWNSMISGYSKM----------------- 206
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ EA+ LF++M++ G P+E +VSVL AC L +L+ G V
Sbjct: 207 --------------RHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEE 252
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F+++N +T + F+ +ALI MY KCG L A F KD VTW MI G A G+ E
Sbjct: 253 FVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEE 312
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--- 358
A+++F M P++ T + +L+AC G + G Q+ +Y + + V
Sbjct: 313 AIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQV-----EIYASERGFQDDVYVG 367
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
LVD+ ++ G L A MP +++ +S+ A++SA + + + +MM G
Sbjct: 368 TALVDMYAKCGSLDNAFRVFYGMPNKNE-VSWNAMISALAFHGQAQEALALFKSMMNEGG 426
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARR 444
+ + H V E RR
Sbjct: 427 TVSPNDITFVGVLSACVHAGLVDEGRR 453
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 130/274 (47%), Gaps = 35/274 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G + V + + + ++G++LIH YG+ AR +FD M +D +WN +++ Y
Sbjct: 246 LGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYA 305
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E + LF+ + D+ITL+ + SACA + L GK V YA++ G + +
Sbjct: 306 QNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVY 365
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAKC +D A R+F M +K
Sbjct: 366 VGTALVDMYAKCGSLDNAFRVFYGM--------------------------------PNK 393
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG--VTPDEEVMVSVLSACSSLSNLQYG-R 237
+ V W +M+ Q +EAL LFK M++EG V+P++ V VLSAC + G R
Sbjct: 394 NEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRR 453
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
L H + + ++D++S+ G LEEA
Sbjct: 454 LFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEA 487
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 167/503 (33%), Positives = 257/503 (51%), Gaps = 42/503 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
+ +H + + DSD +V +SL+H Y + DA +FD+M DV SW+ L++ Y
Sbjct: 133 ARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYAR 192
Query: 60 -----------NDFSDSG----------------------EVLILFKQLIFEGIVADKIT 86
++ DSG E +++F + G D T
Sbjct: 193 QGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTT 252
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+ + A LE L G +H Y K GL + +AL+ MY KC E ++FD+M
Sbjct: 253 ISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQM- 311
Query: 147 SRRNIVSLNILI-----NGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
++ S N I NG ++ L L R++ D+ ++ ++V W SM+ C + + EA
Sbjct: 312 DHMDVGSCNAFIFGLSRNGQVESSL-RLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEA 370
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
LELF++M GV P+ + +L AC +++ L +G+ H F L+ I+ D +V +ALIDM
Sbjct: 371 LELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDM 430
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y+KCG ++ + + F K++V W +I G A +G EA+ +F M+R G KP+ +F
Sbjct: 431 YAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISF 490
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
VL+AC SGL EG F M Y ++ +EH+ C+V LLSRAG L QA I+ MP
Sbjct: 491 TCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMP 550
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
+ ALLS+C ++ LG+ A + +L + Y+LLSN YA +G W EV
Sbjct: 551 VNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNR 610
Query: 442 ARRNMKELQTRKKPGNSIIDLKH 464
R MK RK PG S I++K+
Sbjct: 611 VRDMMKNKGLRKNPGCSWIEVKN 633
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 111/360 (30%), Positives = 183/360 (50%), Gaps = 6/360 (1%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HAH+ KT L +D ++ L+ Y F DA ++ D +P +V S++TL+ ++ F
Sbjct: 36 HAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQF 95
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
L F Q++ G++ D L ACA L L + VH A+ G + ++++L
Sbjct: 96 HHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSL 155
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI----VDKD 181
+ MY KC ++ +A R+FD M ++VS + L+ Y VD A+ +F E+ V +
Sbjct: 156 VHMYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPN 214
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W M+ G + EA+ +F M G PD + SVL A L +L G L+H
Sbjct: 215 LISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHG 274
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++++ + D V +ALIDMY KC E F + D DV + I GL+ G
Sbjct: 275 YVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVES 334
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
+LR+F Q++ +G++ N ++ S++A C +G E +LFR M + V+P CL+
Sbjct: 335 SLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREM-QIAGVKPNSVTIPCLL 393
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 156/365 (42%), Gaps = 53/365 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTL----- 55
MG +H +V K L SD V ++LI YG+ + ++ +FD+M DVGS N
Sbjct: 268 MGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLS 327
Query: 56 --------MSIYNDFSDSG----------------------EVLILFKQLIFEGIVADKI 85
+ ++ D G E L LF+++ G+ + +
Sbjct: 328 RNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSV 387
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T+ L AC + L +GK HC++ + G+ + + +AL+ MYAKC + + FD +
Sbjct: 388 TIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGI 447
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEI----VDKDIVLWRSMMHGCVKAKQPEEA 201
+ +N+V N +I GY A E+FD + DI+ + ++ C ++ EE
Sbjct: 448 PT-KNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEG 506
Query: 202 LELFKKMIDE-GVTPDEE---VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
F M + G+ E MV++LS L + I + + DA V A
Sbjct: 507 SYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQ------AYAMIRRMPVNPDACVWGA 560
Query: 258 LID---MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
L+ +++ E A ++ + + + + A+ G+ NE RV M+ KG+
Sbjct: 561 LLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGL 620
Query: 315 KPNEA 319
+ N
Sbjct: 621 RKNPG 625
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 8/196 (4%)
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
S+ ++L R H IL+ + D + T L+ Y+ +A + +V +++
Sbjct: 24 STTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFS 83
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
T+I + + + AL F QM +G+ P+ S + AC +GL + R++ G+
Sbjct: 84 TLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKAC--AGL--SALKPARQVHGI 139
Query: 348 YRVQP-TIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDL 404
V + FV LV + + + A M E +S+ AL++A D
Sbjct: 140 ASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAAYARQGCVDE 198
Query: 405 GKKVANNMMKLGNQSH 420
K++ + M G Q +
Sbjct: 199 AKRLFSEMGDSGVQPN 214
>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Cucumis sativus]
Length = 817
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 156/468 (33%), Positives = 261/468 (55%), Gaps = 34/468 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ + LHA V K + + V N+LI Y R + +FD MP +DV SWNT++S +
Sbjct: 332 LAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFV 391
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L+LF ++ + ++ D +T+ L SA + L GK H Y + G+++
Sbjct: 392 QNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFE-G 450
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
M++ L+ MYAK ++ A +F++ S ++
Sbjct: 451 MDSYLIDMYAKSGLIEAAQNVFEKSFSH------------------------------ER 480
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D W SMM G + ++A + ++M+D+ V P+ + S+L AC+ + +G+ +H
Sbjct: 481 DQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLH 540
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
F ++N++ Q+ FV TALIDMYSK GS+ A F K + K +VT++TMI G +G+G
Sbjct: 541 GFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGE 600
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F++M++ GI+P+ T V+VL+AC ++GL+ EG Q+F M VY +QP+ EHF C+
Sbjct: 601 SALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCV 660
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFIS-YKALLSACITYSEFDLGKKVANNMMKLG--N 417
D+L RAG + +A EF+ + + + + +LL+AC + +F+LGK VA ++++ N
Sbjct: 661 ADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKIN 720
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+VLLSN YA E +W V R+ M+E +K+ G+S I++ Y
Sbjct: 721 GKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEIAGY 768
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/421 (24%), Positives = 186/421 (44%), Gaps = 69/421 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD-------------ARVLFDKMPFR 47
+GK +HAH + ++ V NSL++ Y + T R +FD M R
Sbjct: 114 VGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKR 173
Query: 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH 107
V +WNTL++ Y E + F ++ GI ++ V +F A + L VH
Sbjct: 174 TVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVH 233
Query: 108 CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
K+G EY+ ++ +VS I + Y ++ +
Sbjct: 234 GMLVKLGSEYVNDLY----------------------------VVSSAIFM--YAELGCL 263
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSA 226
+ A++VFD ++++ +W +M+ V+ E ++LF + ++ E DE ++S +SA
Sbjct: 264 EFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISA 323
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
S L + +H F+++N V ALI MYS+C S++ + F KDVV+W
Sbjct: 324 ASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSW 383
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR-----------HSGLIT 335
TMI GL +EAL +FY+M+++ + + T ++L+A H L+
Sbjct: 384 NTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLR 443
Query: 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE-FIKIMPAEDKFISYKALLS 394
G Q F M L+D+ +++GL+ A+ F K E ++ +++S
Sbjct: 444 NGIQ-FEGMDSY------------LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMS 490
Query: 395 A 395
Sbjct: 491 G 491
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 176/404 (43%), Gaps = 42/404 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IYNDF 62
LH H T + + Y + L G++ L AR LFD +P WNT++ + N+F
Sbjct: 19 LHTHSTNPKIPTIRYRLSRLCQ-EGQLHL---ARQLFDALPRPSTVLWNTIIIGLVCNNF 74
Query: 63 SDSGEVLILFKQLIFEG--IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D E L+ + + + D T + ACA L GK VH + + +
Sbjct: 75 PD--EALLFYSNMKSSSPQVKCDSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRI 132
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+LL MY+ C ++ ++GY DL R+VFD + +
Sbjct: 133 VYNSLLNMYSMCSSTTPDGKM----------------VSGY---SRCDLVRKVFDTMRKR 173
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V W +++ V+ ++ EA++ F M+ G+ P V+V A SSL + + +VH
Sbjct: 174 TVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVH 233
Query: 241 RFI--LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+ L + D +V ++ I MY++ G LE A F ++ W TMI
Sbjct: 234 GMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNF 293
Query: 299 GNEALRVFYQ-MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
E +++F+Q +E + +E T +S ++A H QL + ++
Sbjct: 294 SLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLH-----AFVIKNVAVTQ 348
Query: 358 VC----LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
VC L+ + SR + + + MP +D +S+ ++SA +
Sbjct: 349 VCVMNALIAMYSRCNSIDTSFKIFDNMPEKD-VVSWNTMISAFV 391
>gi|147765658|emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera]
Length = 1849
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/466 (32%), Positives = 257/466 (55%), Gaps = 5/466 (1%)
Query: 1 MGKGLHAHVTK-TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+ KG+H ++ + L D VGN+L+ FY + A F + +D+ SWN ++ +
Sbjct: 1299 VAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAF 1358
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL---E 116
+ ++ L ++ EGI D IT++ + A + ++ K H Y+ + GL +
Sbjct: 1359 TESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGD 1418
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ N +L YAKC M A+ +F + +RN+V+ N +I+GY+ D A +F+
Sbjct: 1419 AXPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVTSSSHDDAYAIFNT 1478
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ + D+ W M+ + P++AL LF ++ +G+ PD ++S+L AC+ ++++
Sbjct: 1479 MSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHML 1538
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
R H ++++ D + A IDMYSKCGS+ A F + KD+V +T M+ G A +
Sbjct: 1539 RQCHGYVIRACFN-DVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMH 1597
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G+G EALR+F M G+KP+ +VL AC H+GL+ EG ++F + V+ QPT+E
Sbjct: 1598 GMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQ 1657
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL+R G + A F+ MP E + LL AC T+ E +LG+ VA+++ K+
Sbjct: 1658 YACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIE 1717
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ + YV++SN YA + W V E RR M+ + +K G S I++
Sbjct: 1718 SDNIGNYVVMSNLYAADARWDGVMEIRRLMRTRELKKPAGCSWIEV 1763
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 113/424 (26%), Positives = 204/424 (48%), Gaps = 49/424 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALF-TDARVLFDKMPFRDVGSWNTLMSIYN 60
GK +H++V K+ L+S GN+LI Y + L +DA F+++ F+DV SWN +++ ++
Sbjct: 1092 GKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFS 1151
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK---LHYGKTVHCYA-TKVGLE 116
+ + E LF ++ I + T+ + CA LE+ YGK VHC+ ++ L
Sbjct: 1152 ENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRMELV 1211
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+++ N+L+ Y + +M++A LF M S R++VS N +I GY
Sbjct: 1212 EDVSVINSLMSFYLRIXQMEKAEFLFRNMKS-RDLVSWNAIIAGY--------------- 1255
Query: 177 IVDKDIVLWRSMMHGCVKAKQPE--EALELFKKMID-EGVTPDEEVMVSVLSACSSLSNL 233
A E +ALELF + I E + PD +VSVL AC+ + NL
Sbjct: 1256 ------------------ASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNL 1297
Query: 234 QYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
Q + +H +I+++ + +D V AL+ Y+KC + AL TF KD+++W +++
Sbjct: 1298 QVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDA 1357
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVL---AACRHSGLITEGCQLFRRMGGVY- 348
G + + + M R+GI+P+ T ++++ AA + E R G +
Sbjct: 1358 FTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQG 1417
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
PT+ + ++D ++ G + A + + ++ +++S +T S D +
Sbjct: 1418 DAXPTLGN--GMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVTSSSHDDAYAI 1475
Query: 409 ANNM 412
N M
Sbjct: 1476 FNTM 1479
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 111/463 (23%), Positives = 200/463 (43%), Gaps = 93/463 (20%)
Query: 2 GKGLHAHV-TKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
GK +H HV + L D+ V NSL+ FY R+ A LF M RD+ SWN +++ Y
Sbjct: 1197 GKEVHCHVLRRMELVEDVSVINSLMSFYLRIXQMEKAEFLFRNMKSRDLVSWNAIIAGYA 1256
Query: 61 DFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYM 118
+ + L LF + I E I D +TLV + ACA + L K +H Y + GL
Sbjct: 1257 SNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLRED 1316
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ NALL YAKC AL+ F M SR++++S N +++ + +
Sbjct: 1317 TSVGNALLSFYAKCNYTQAALQTF-LMISRKDLISWNAILDAFTE--------------- 1360
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
GC + L M+ EG+ PD +++++ +++S ++ +
Sbjct: 1361 -----------SGC-----ETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKE 1404
Query: 239 VHRFILQNNITQDAFVKT---ALIDMYSKCGSLEEALVTF------------------YK 277
H + ++ + Q T ++D Y+KCG+++ A+ F Y
Sbjct: 1405 THSYSIRFGLLQGDAXPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYV 1464
Query: 278 TDCK--------------DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
T D+ TW M+ A ++AL +F++++ +G+KP+ T +S
Sbjct: 1465 TSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMS 1524
Query: 324 VLAACRH----------SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
+L AC H G + C R+ G + +D+ S+ G ++ A
Sbjct: 1525 ILPACAHMASVHMLRQCHGYVIRACFNDVRLNGAF------------IDMYSKCGSVFGA 1572
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ P +D + + A++ + + ++ + M++LG
Sbjct: 1573 YKLFLSSPQKD-LVMFTAMVGGFAMHGMGEEALRIFSYMLELG 1614
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 142/332 (42%), Gaps = 60/332 (18%)
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
L L +C + +G +H YA K+G ++ LL +YAK +D +LF
Sbjct: 974 LAALLKSCVAXSAIRFGSVLHGYALKLGHVSCQSLCKGLLNLYAKSGALDYCNKLFG--- 1030
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE-EALELF 205
E+ +D V+W ++ G + E E + LF
Sbjct: 1031 -----------------------------EMDQRDPVIWNIVLSGLAGFQSHEAEVMRLF 1061
Query: 206 KKM--IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
+ M ++E P+ + VL C+ L G+ VH +++++ + ALI MY+
Sbjct: 1062 RAMHMVNE-AKPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYA 1119
Query: 264 KCGSL-EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
KCG + +A F + + KDVV+W +I G + EA ++F+ M + I+PN AT
Sbjct: 1120 KCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIA 1179
Query: 323 SVLAAC---------RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS---RAGLL 370
S+L C R+ + C + RRM +E + L+S R +
Sbjct: 1180 SILPVCASLEENAGYRYGKEVH--CHVLRRM-------ELVEDVSVINSLMSFYLRIXQM 1230
Query: 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
+AE + M + D +S+ A+++ + E+
Sbjct: 1231 EKAEFLFRNMKSRD-LVSWNAIIAGYASNGEW 1261
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 157/494 (31%), Positives = 255/494 (51%), Gaps = 65/494 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY---GRM--------------------------- 31
G+ +H HV K D D+YV SLI Y GR+
Sbjct: 110 GQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYAS 169
Query: 32 -ALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+A+ +FD++P +DV SWN ++S Y + + E L LFK ++ + D+ T+V +
Sbjct: 170 RGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTV 229
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+ + G+ VH + G L + NAL+ +Y+KC E++ A LF+ +
Sbjct: 230 VSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPY--- 286
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
KD++ W +++ G +EAL LF++M+
Sbjct: 287 -----------------------------KDVISWNTLIGGYTHMNLYKEALLLFQEMLR 317
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ--NNITQDAFVKTALIDMYSKCGSL 268
G TP++ M+S+L AC+ L + GR +H +I + + + ++T+LIDMY+KCG +
Sbjct: 318 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDI 377
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E A F K + +W MI G A +G + + +F +M + GI+P++ TFV +L+AC
Sbjct: 378 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSAC 437
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
HSG++ G +FR M Y++ P +EH+ C++DLL +GL +AEE I M E +
Sbjct: 438 SHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVI 497
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+ +LL AC + +LG+ A N++K+ ++ +YVLLSN YA G W EVA R + +
Sbjct: 498 WCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLND 557
Query: 449 LQTRKKPGNSIIDL 462
+K PG S I++
Sbjct: 558 KGMKKVPGCSSIEI 571
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 214/420 (50%), Gaps = 14/420 (3%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIYND 61
+HA + KT L + Y + LI F F A +F+ + ++ WNT+ +
Sbjct: 9 IHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 68
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
SD L L+ +I G++ + T L +CA+ + G+ +H + K+G + L +
Sbjct: 69 SSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYV 128
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MY + +++A ++FDE R++VS LI GY ++ A+++FDEI KD
Sbjct: 129 HTSLISMYVQNGRLEDAHKVFDE-SPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKD 187
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ G + +EALELFK M+ V PDE MV+V+SAC+ +++ GR VH
Sbjct: 188 VVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHS 247
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I + + + ALID+YSKCG LE A F KDV++W T+I G + L E
Sbjct: 248 WIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKE 307
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF----RRMGGVYRVQPTIEHF 357
AL +F +M R G PN+ T +S+L AC H G I G + +R+ GV
Sbjct: 308 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSL---R 364
Query: 358 VCLVDLLSRAGLLYQAEE-FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L+D+ ++ G + A + F I+ S+ A++ + D + + M K G
Sbjct: 365 TSLIDMYAKCGDIEAAHQVFNSIL--HKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNG 422
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 163/370 (44%), Gaps = 69/370 (18%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ + S++ + N+LI Y + A LF+ +P++DV SWNTL+ Y
Sbjct: 241 LGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYT 300
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYM 118
+ E L+LF++++ G + +T++ + ACA L + G+ +H Y K G+
Sbjct: 301 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANA 360
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ +L+ MYAKC +++ A +VF+ I+
Sbjct: 361 SSLRTSLIDMYAKCGDIEA--------------------------------AHQVFNSIL 388
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K + W +M+ G + + + ++F +M G+ PD+ V +LSACS L GR
Sbjct: 389 HKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRH 448
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+ R ++TQD Y LE + MI+ L + GL
Sbjct: 449 IFR-----SMTQD----------YKMTPKLEH---------------YGCMIDLLGHSGL 478
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EA + ME ++P+ + S+L AC+ G + G + + + P +V
Sbjct: 479 FKEAEEMINTME---MEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPG--SYV 533
Query: 359 CLVDLLSRAG 368
L ++ + AG
Sbjct: 534 LLSNIYATAG 543
>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Cucumis sativus]
Length = 793
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 156/468 (33%), Positives = 261/468 (55%), Gaps = 34/468 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ + LHA V K + + V N+LI Y R + +FD MP +DV SWNT++S +
Sbjct: 308 LAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFV 367
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L+LF ++ + ++ D +T+ L SA + L GK H Y + G+++
Sbjct: 368 QNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFE-G 426
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
M++ L+ MYAK ++ A +F++ S ++
Sbjct: 427 MDSYLIDMYAKSGLIEAAQNVFEKSFSH------------------------------ER 456
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D W SMM G + ++A + ++M+D+ V P+ + S+L AC+ + +G+ +H
Sbjct: 457 DQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLH 516
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
F ++N++ Q+ FV TALIDMYSK GS+ A F K + K +VT++TMI G +G+G
Sbjct: 517 GFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGE 576
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F++M++ GI+P+ T V+VL+AC ++GL+ EG Q+F M VY +QP+ EHF C+
Sbjct: 577 SALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCV 636
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFIS-YKALLSACITYSEFDLGKKVANNMMKLG--N 417
D+L RAG + +A EF+ + + + + +LL+AC + +F+LGK VA ++++ N
Sbjct: 637 ADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKIN 696
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+VLLSN YA E +W V R+ M+E +K+ G+S I++ Y
Sbjct: 697 GKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEIAGY 744
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/421 (25%), Positives = 187/421 (44%), Gaps = 69/421 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD-------------ARVLFDKMPFR 47
+GK +HAH + ++ V NSL++ Y + T R +FD M R
Sbjct: 90 VGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKR 149
Query: 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH 107
V +WNTL++ Y E + F ++ GI ++ V +F A + L VH
Sbjct: 150 TVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVH 209
Query: 108 CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
K+G EY+ N L ++ A+ ++ E+G +
Sbjct: 210 GMLVKLGSEYV----NDLYVV-------SSAIFMYAELGC-------------------L 239
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSA 226
+ A++VFD ++++ +W +M+ V+ E ++LF + ++ E DE ++S +SA
Sbjct: 240 EFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISA 299
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
S L + +H F+++N V ALI MYS+C S++ + F KDVV+W
Sbjct: 300 ASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSW 359
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR-----------HSGLIT 335
TMI GL +EAL +FY+M+++ + + T ++L+A H L+
Sbjct: 360 NTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLR 419
Query: 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE-FIKIMPAEDKFISYKALLS 394
G Q F M L+D+ +++GL+ A+ F K E ++ +++S
Sbjct: 420 NGIQ-FEGMDSY------------LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMS 466
Query: 395 A 395
Sbjct: 467 G 467
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 163/372 (43%), Gaps = 38/372 (10%)
Query: 37 ARVLFDKMPFRDVGSWNTLMS--IYNDFSDSGEVLILFKQLIFEG--IVADKITLVILFS 92
AR LFD +P WNT++ + N+F D E L+ + + + D T +
Sbjct: 23 ARQLFDALPRPSTVLWNTIIIGLVCNNFPD--EALLFYSNMKSSSPQVKCDSYTYSSVLK 80
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
ACA L GK VH + + + + N+LL MY+ C ++
Sbjct: 81 ACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKM----------- 129
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
++GY DL R+VFD + + +V W +++ V+ ++ EA++ F M+ G
Sbjct: 130 -----VSGY---SRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIG 181
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFI--LQNNITQDAFVKTALIDMYSKCGSLEE 270
+ P V+V A SSL + + +VH + L + D +V ++ I MY++ G LE
Sbjct: 182 IKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEF 241
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ-MERKGIKPNEATFVSVLAACR 329
A F ++ W TMI E +++F+Q +E + +E T +S ++A
Sbjct: 242 AKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAAS 301
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRAGLLYQAEEFIKIMPAEDK 385
H QL + ++ VC L+ + SR + + + MP +D
Sbjct: 302 HLQKFELAEQLH-----AFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKD- 355
Query: 386 FISYKALLSACI 397
+S+ ++SA +
Sbjct: 356 VVSWNTMISAFV 367
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 17/175 (9%)
Query: 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG--VTPDEEVMVSVLSA 226
LAR++FD + VLW +++ G V P+EAL + M V D SVL A
Sbjct: 22 LARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKA 81
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL--EEALVTFYKTDC---- 280
C+ NL G+ VH L+ + V +L++MYS C S + +V+ Y + C
Sbjct: 82 CADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGY-SRCDLVR 140
Query: 281 --------KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+ VV W T+I EA++ F M + GIKP+ +FV+V A
Sbjct: 141 KVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPA 195
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 157/419 (37%), Positives = 238/419 (56%), Gaps = 11/419 (2%)
Query: 51 SWNTLMSIYNDFSDSGEVLIL---FKQLIFEGIVADKITLVILFSACARLEK---LHYGK 104
SW T ++ D+ SG ++ F Q+ I + IT + L SACA + +G
Sbjct: 58 SWTTSIA---DYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGT 114
Query: 105 TVHCYATKVGLEYM-LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
+H + K+GL+ + + AL+ MYAKC ++ A FD+MG R N+VS N +I+GY+
Sbjct: 115 AIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVR-NLVSWNTMIDGYMR 173
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223
+ A +VFD + K+ + W +++ G VK EEALE F++M GV PD +++V
Sbjct: 174 NGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAV 233
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
++AC++L L G VHR ++ + + V +LIDMYS+CG ++ A F + + +
Sbjct: 234 IAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTL 293
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
V+W ++I G A GL +EAL F M+ +G KP+ ++ L AC H+GLI EG ++F
Sbjct: 294 VSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEH 353
Query: 344 MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
M V R+ P IEH+ CLVDL SRAG L +A +K MP + + +LL+AC T
Sbjct: 354 MKRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIG 413
Query: 404 LGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
L + V N +++L + YVLLSN YA G W + RR MKE +KKPG S I++
Sbjct: 414 LAENVMNYLIELDSGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSIEI 472
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 141/366 (38%), Gaps = 99/366 (27%)
Query: 2 GKGLHAHVTKTALD-SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
G +HAHV K LD +D+ VG +LI Y + AR+ FD+M R++ SWNT++ Y
Sbjct: 113 GTAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYM 172
Query: 60 --NDFSDS----------------------------GEVLILFKQLIFEGIVADKITLVI 89
F D+ E L F+++ G+ D +T++
Sbjct: 173 RNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIA 232
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +ACA L L G VH + + N+L+ MY++C +D A ++FD M +R
Sbjct: 233 VIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRM-PQR 291
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+VS N +I G+ L D EAL F M
Sbjct: 292 TLVSWNSIIVGFAVNGLAD-------------------------------EALSYFNSMQ 320
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+EG PD L ACS + G R+ I L+D+YS+ G L
Sbjct: 321 EEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRL 380
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E EAL V M +KPNE S+LAAC
Sbjct: 381 E-------------------------------EALNVLKNMP---MKPNEVILGSLLAAC 406
Query: 329 RHSGLI 334
R G I
Sbjct: 407 RTQGNI 412
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 5/185 (2%)
Query: 1 MGKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
+G GL H V +++ V NSLI Y R AR +FD+MP R + SWN+++
Sbjct: 243 LGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVG 302
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ + E L F + EG D ++ AC+ + G + + +V +
Sbjct: 303 FAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRV-RRIL 361
Query: 119 LNMEN--ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+E+ L+ +Y++ ++EAL + M + N V L L+ + LA V +
Sbjct: 362 PRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLAENVMNY 421
Query: 177 IVDKD 181
+++ D
Sbjct: 422 LIELD 426
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
+V+WTT I G +A F QM I+PN TF+++L+AC H
Sbjct: 56 IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAH 103
>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1174
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 176/535 (32%), Positives = 265/535 (49%), Gaps = 74/535 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HAH L +D++V +LI Y R A F AR +F KMP RDV +WN +++ Y +
Sbjct: 119 GRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYAN 178
Query: 62 FSDSGEVLI-LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY--- 117
+ L G+ + TLV L A+ L G ++H Y + LE
Sbjct: 179 HGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEE 238
Query: 118 MLNMENALLLMYAKCKE-------------------------------MDEALRLFDEM- 145
+ + ALL MYAKCK+ M EA LF +M
Sbjct: 239 QVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDML 298
Query: 146 --------------------------------------GSRRNIVSLNILINGYIDMELV 167
G ++ + N L++ Y L+
Sbjct: 299 VEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLI 358
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227
+ A FDEI KD + + +++ GCV+ + EEA +FKKM + PD MVS++ AC
Sbjct: 359 NEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPAC 418
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
S L+ LQ+G+ H ++ + + + +LIDMY+KCG ++ + F K +DVV+W
Sbjct: 419 SHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWN 478
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
TMI G +GLG EA +F M+ +G P++ TF+ ++AAC HSGL+TEG F M
Sbjct: 479 TMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHK 538
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
Y + P +EH++C+VDLL+R GLL +A +FI+ MP + + ALL AC + DLGK+
Sbjct: 539 YGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQ 598
Query: 408 VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
V+ + KLG + +VLLSN ++ G + E AE R K +K PG S I++
Sbjct: 599 VSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEI 653
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 148/322 (45%), Gaps = 45/322 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG LHA + K+ + +D+ NSL+ Y + L +A + FD++ +D S+ L+S
Sbjct: 325 MGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCV 384
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E ++FK++ + D T+V L AC+ L L +GK H GL +
Sbjct: 385 QNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETS 444
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ MYAKC ++D + ++FD+M + R++VS N +I GY
Sbjct: 445 ICNSLIDMYAKCGKIDLSRQVFDKMPA-RDVVSWNTMIAGY------------------- 484
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR--- 237
+HG K EA LF M ++G PD+ + +++ACS + G+
Sbjct: 485 -------GIHGLGK-----EATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWF 532
Query: 238 --LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL- 293
+ H++ + + ++D+ ++ G L+EA K DV W ++
Sbjct: 533 DTMTHKYGILPRMEH----YICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACR 588
Query: 294 --ANYGLGNEALRVFYQMERKG 313
N LG + R+ ++ +G
Sbjct: 589 IHKNIDLGKQVSRIIQKLGPEG 610
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 162/374 (43%), Gaps = 42/374 (11%)
Query: 29 GRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLV 88
G++AL AR +FD++P D ++N L+ Y+ + L++ ++ + +K T
Sbjct: 48 GQLAL---ARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFP 104
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ AC+ L L G+T+H +A GL L + AL+ +Y +C A +F +M R
Sbjct: 105 FVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMR 164
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
D+V W +M+ G A+ M
Sbjct: 165 --------------------------------DVVAWNAMLAGYANHGMYHHAIAHLLDM 192
Query: 209 IDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD---AFVKTALIDMYSK 264
D G+ P+ +VS+L + L G +H + L+ + Q+ + TAL+DMY+K
Sbjct: 193 QDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAK 252
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV-S 323
C L A F+ ++ VTW+ +I G EA +F M +G+ AT V S
Sbjct: 253 CKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVAS 312
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
L C + G QL + + + L+ + ++AGL+ +A F + +
Sbjct: 313 ALRVCASLADLHMGTQLHALIAK-SGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVK 371
Query: 384 DKFISYKALLSACI 397
D ISY ALLS C+
Sbjct: 372 DT-ISYGALLSGCV 384
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 1/181 (0%)
Query: 161 YIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVM 220
+I + LAR+VFD I D + +++ A++L++ M+ V P++
Sbjct: 44 HISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTF 103
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC 280
VL ACS+L +L+ GR +H + D FV TALID+Y +C A F K
Sbjct: 104 PFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPM 163
Query: 281 KDVVTWTTMIEGLANYGLGNEALRVFYQME-RKGIKPNEATFVSVLAACRHSGLITEGCQ 339
+DVV W M+ G AN+G+ + A+ M+ G++PN +T VS+L G + +G
Sbjct: 164 RDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTS 223
Query: 340 L 340
+
Sbjct: 224 I 224
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 159/463 (34%), Positives = 242/463 (52%), Gaps = 34/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ H V + LD D +V +SLI Y R DAR +FD++ +D+ SWN+++S Y+
Sbjct: 146 GRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSK 205
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+GE + LF++++ G ++++LV + AC L L G V + + + M
Sbjct: 206 MRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFM 265
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+AL+ MY KC ++ VS AR +FD + KD
Sbjct: 266 GSALIHMYGKCGDL----------------VS----------------ARRIFDSMKKKD 293
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G + EEA++LF+ M PD+ ++ +LSAC+S+ L G+ V
Sbjct: 294 KVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEI 353
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + D +V TAL+DMY+KCGSL+ A FY K+ V+W MI LA +G E
Sbjct: 354 YASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQE 413
Query: 302 ALRVFYQMERKG--IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
AL +F M +G + PN+ TFV VL+AC H+GL+ EG +LF M + + P IEH+ C
Sbjct: 414 ALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSC 473
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDL SRAG L +A +F+ MP + + ALL AC D+ ++V +++L +
Sbjct: 474 MVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSN 533
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YV+ S YA W + A R MK+ K PG S ID+
Sbjct: 534 SGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDI 576
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 123/447 (27%), Positives = 212/447 (47%), Gaps = 47/447 (10%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM-SIYND 61
K +HA + L + I+ NS ++ + F A V F + S+N ++ +
Sbjct: 49 KQIHAQL----LTNSIHKPNSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTA 104
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
++ S L + ++ F G+ + +T LF AC+ L + G+ HC + GL+ ++
Sbjct: 105 WNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHV 164
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
++L+ MYA+C +M +A ++FDE+ S++++VS N +I+GY M
Sbjct: 165 SHSLITMYARCGKMGDARKVFDEI-SQKDLVSWNSMISGYSKM----------------- 206
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ EA+ LF++M++ G P+E +VSVL AC L +L+ G V
Sbjct: 207 --------------RHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEE 252
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F+++N +T + F+ +ALI MY KCG L A F KD VTW MI G A G+ E
Sbjct: 253 FVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEE 312
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--- 358
A+++F M P++ T + +L+AC G + G Q+ +Y + + V
Sbjct: 313 AIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQV-----EIYASERGFQDDVYVG 367
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
LVD+ ++ G L A MP +++ +S+ A++SA + + + +MM G
Sbjct: 368 TALVDMYAKCGSLDNAFRVFYGMPKKNE-VSWNAMISALAFHGQAQEALALFKSMMNEGG 426
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARR 444
+ + H V E RR
Sbjct: 427 TVSPNDITFVGVLSACVHAGLVDEGRR 453
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 133/274 (48%), Gaps = 35/274 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G + V + + + ++G++LIH YG+ AR +FD M +D +WN +++ Y
Sbjct: 246 LGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYA 305
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E + LF+ + D+ITL+ + SACA + L GK V YA++ G + +
Sbjct: 306 QNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVY 365
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAKC +D A R+F M ++N VS N +I+
Sbjct: 366 VGTALVDMYAKCGSLDNAFRVFYGM-PKKNEVSWNAMISALA------------------ 406
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG--VTPDEEVMVSVLSACSSLSNLQYG-R 237
HG Q +EAL LFK M++EG V+P++ V VLSAC + G R
Sbjct: 407 --------FHG-----QAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRR 453
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
L H + + ++D++S+ G LEEA
Sbjct: 454 LFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEA 487
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 170/493 (34%), Positives = 256/493 (51%), Gaps = 33/493 (6%)
Query: 3 KGLHAHVTKTALDS-DIYVGNSLIHFYGRMA-LFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K + A + KT L+S + G L+H + AR LF + DV +NTL+ +
Sbjct: 22 KQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNPDVFMYNTLIRGLS 81
Query: 61 DFSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
D L LF ++ + + + D + L A A L G +HC A GL+ L
Sbjct: 82 DSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHL 141
Query: 120 NMENALLLMYAKCKEMDEALRLFDEM-------------------GSR-----------R 149
+ L+ MYA+C + A ++FDEM G + R
Sbjct: 142 FVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIR 201
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N+ S NI++ GY + LAREVF ++ KD V W +M+ G +A F+++
Sbjct: 202 NLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVR 261
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
EG+ P+E + VLSAC+ ++GR++H F+ ++ Q V ALID YSKCG+L+
Sbjct: 262 REGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLD 321
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
A + F + V+WT MI G+A +G G EA+R+F +ME IKP+ TF+S+L AC
Sbjct: 322 MARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACS 381
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
H+GL+ GC F RM Y ++P IEH+ C+VDL RAG L QA +F+ MP I +
Sbjct: 382 HAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVW 441
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449
+ LL AC + L +V + +L ++ +VLLSN YA+ G W +VA RR+M
Sbjct: 442 RTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQ 501
Query: 450 QTRKKPGNSIIDL 462
+ +K PG S+I++
Sbjct: 502 RLKKTPGWSMIEV 514
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 144/365 (39%), Gaps = 106/365 (29%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDK------------------ 43
G LH LDS ++VG +LI Y A AR +FD+
Sbjct: 125 GLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFR 184
Query: 44 -------------MPFRDVGSWNTLMSIYND----------------------------F 62
MP R++ SWN +++ Y F
Sbjct: 185 CEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGF 244
Query: 63 SDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ +G + F+++ EG+ ++++L + SACA+ +G+ +H + K G ++
Sbjct: 245 AHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQII 304
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ NAL+ Y+KC +D A +FD M RR+ VS
Sbjct: 305 SVNNALIDTYSKCGNLDMARLVFDNM-LRRSAVS-------------------------- 337
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS-----SLSNLQ 234
W +M+ G EEA+ LF +M + + PD +S+L ACS L
Sbjct: 338 -----WTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSY 392
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEG 292
+ R+V+ + ++ I ++D+Y + G L++A V D+V W T++
Sbjct: 393 FSRMVNTYGIEPVIEHYG----CMVDLYGRAGKLQQAYDFVCQMPISPNDIV-WRTLLGA 447
Query: 293 LANYG 297
+ +G
Sbjct: 448 CSIHG 452
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 145/464 (31%), Positives = 253/464 (54%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + + + + +L Y + AR++FD M + V SWN++M Y
Sbjct: 266 VGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYV 325
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + + +F++++ EGI +T++ ACA L L GK VH + ++ L ++
Sbjct: 326 QNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDIS 385
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ MY+KCK VD+A ++F+ + +
Sbjct: 386 VMNSLISMYSKCKR--------------------------------VDIASDIFNNLNGR 413
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
V W +M+ G + + EAL F +M G+ PD MVSV+ A + LS ++ + +H
Sbjct: 414 THVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIH 473
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I+++ + ++ FV TAL+DMYSKCG++ A F + V+TW MI+G +GLG
Sbjct: 474 GLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGR 533
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F +M++ ++PN+ T++SV++AC HSGL+ EG + F+ M Y ++P+++H+ +
Sbjct: 534 AALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAM 593
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG + +A +FI+ MP Y A AC + ++G+K A + +L
Sbjct: 594 VDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEG 653
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+VLL+N YA W++VAE R+ M++ +K PG S+++L++
Sbjct: 654 GYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRN 697
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 137/461 (29%), Positives = 222/461 (48%), Gaps = 60/461 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + + ++++ +++ Y + DA +FD+MP RD+ SWNT+++ ++
Sbjct: 166 GKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQ 225
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + L L ++ EG D ITLV + A A + L GK++H YA + G ++N+
Sbjct: 226 NGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNI 285
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL MY+KC GS V+ AR +FD + K
Sbjct: 286 STALADMYSKC-------------GS-------------------VETARLIFDGMDQKT 313
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W SMM G V+ +PE+A+ +F+KM++EG+ P ++ L AC+ L +L+ G+ VH+
Sbjct: 314 VVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHK 373
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F+ Q N+ D V +LI MYSKC ++ A F + + V+W MI G A G +E
Sbjct: 374 FVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSE 433
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAA------CRHS----GLITEGCQLFRRMGGVYRVQ 351
AL F +M+ G+KP+ T VSV+ A RH+ GLI C +
Sbjct: 434 ALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC-----------LD 482
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN- 410
I LVD+ S+ G ++ A + M ++ I++ A++ Y LG+ +
Sbjct: 483 KNIFVTTALVDMYSKCGAIHMARKLFD-MISDRHVITWNAMIDG---YGTHGLGRAALDL 538
Query: 411 -NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450
+ MK G LS A H V E R+ K ++
Sbjct: 539 FDKMKKGAVEPNDITYLSVISACS-HSGLVDEGLRHFKSMK 578
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 119/254 (46%), Gaps = 10/254 (3%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
++ A VF+ I DK L+ +M+ G K E AL +M + V P +L
Sbjct: 97 INEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKV 156
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C ++L+ G+ +H ++ N+ + F T +++MY+KC +++A F + +D+V+W
Sbjct: 157 CGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSW 216
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
T+I G + G +AL + +M+ +G +P+ T V+VL A GL+ G +
Sbjct: 217 NTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHG---- 272
Query: 347 VYRVQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
Y ++ V L D+ S+ G + A M + +S+ +++ + E
Sbjct: 273 -YAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMD-QKTVVSWNSMMDGYVQNGEP 330
Query: 403 DLGKKVANNMMKLG 416
+ V M++ G
Sbjct: 331 EKAIAVFEKMLEEG 344
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/460 (32%), Positives = 256/460 (55%), Gaps = 1/460 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HAH+ + D++ + LI L A +F ++ ++ +N+ + ++
Sbjct: 32 KIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGS 91
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
D + + Q G+V D +T L AC + L G H + G + + ++
Sbjct: 92 KDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQ 151
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N+L+ MY+ ++ A +F + S ++VS ++ GYI V AR++FD++ +K++
Sbjct: 152 NSLVTMYSTLGDIKSASYVFRRI-SCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNL 210
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W M+ G K ++A+EL+ + EGV +E VMVSV+++C+ L L+ G H +
Sbjct: 211 VTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDY 270
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
IL+N +T + + TAL+DMY++CGS+++A+ F + +D ++WTT+I G A +G +A
Sbjct: 271 ILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKA 330
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L F +ME+ G+ P E TF +VL+AC H GL+ G +LF M YR++P +EH+ C+VD
Sbjct: 331 LEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVD 390
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL RAG L +AE+F+ MP + + ALL AC + ++ ++ +++L +
Sbjct: 391 LLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGY 450
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA W V R+ MKE K PG ++ ++
Sbjct: 451 YVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEM 490
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 104/414 (25%), Positives = 174/414 (42%), Gaps = 104/414 (25%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMA-------LF------------------- 34
MG H + + DSD+YV NSL+ Y + +F
Sbjct: 131 MGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYI 190
Query: 35 -----TDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
T AR LFDKMP +++ +W+ ++S Y S + + L+ L EG+ A++ +V
Sbjct: 191 KSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVS 250
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ ++CA L L G+ H Y + + L + AL+ MYA+C +D+A+ +FD++ R
Sbjct: 251 VIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPG-R 309
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+ +S LI G+ MHG E+ALE F +M
Sbjct: 310 DALSWTTLIAGF--------------------------AMHGYA-----EKALEYFSRME 338
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
G+TP E +VLSACS +G LV R + L
Sbjct: 339 KAGLTPREITFTAVLSACS------HGGLVERGL-----------------------ELF 369
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
E++ Y+ + + + + M++ L G EA + +M +KPN + ++L ACR
Sbjct: 370 ESMKRDYRIEPR-LEHYGCMVDLLGRAGKLAEAEKFVNEMP---MKPNAPIWGALLGACR 425
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEH---FVCLVDLLSRAGLLYQAEEFIKIM 380
I + ++ R G ++ EH +V L ++ +R E ++M
Sbjct: 426 ----IHKNSEIAERAGKTL-IELKPEHSGYYVLLSNIYARTNKWENVENIRQMM 474
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC 280
+S L +C++LS+L +++H +++ + D F + LI + L+ A FY+
Sbjct: 19 LSFLESCTTLSHL---KIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQN 75
Query: 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339
++ + + I G + +++ + Q +R G+ P+ T+ ++ AC G + G Q
Sbjct: 76 PNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQ 134
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 148/464 (31%), Positives = 256/464 (55%), Gaps = 36/464 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H K+ S+I V N+++ YG+ +A ++F++M RD SWN +++ +
Sbjct: 332 GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQ 391
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH--CYATKVGLEYML 119
+ + L LF ++ G+ D+ T + ACA + L+ G +H +++GL+ +
Sbjct: 392 NGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFV 451
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ AL+ MY+KC M++A +L D + +
Sbjct: 452 GI--ALIDMYSKCGMMEKAEKLHDRL--------------------------------AE 477
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+ +V W +++ G KQ EEA + F KM++ GV PD ++L C++L ++ G+ +
Sbjct: 478 QTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQI 537
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H I++ + DA++ + L+DMYSKCG++++ + F K +D VTW M+ G A +GLG
Sbjct: 538 HAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLG 597
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL++F M+ + +KPN ATF++VL AC H GL+ +G F M Y + P +EH+ C
Sbjct: 598 EEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSC 657
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VD++ R+G + +A E I+ MP E + ++ LLS C + ++ +K A ++++L +
Sbjct: 658 VVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPED 717
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AYVLLSN YA G W EV + R+ M+ +K+PG S I++K
Sbjct: 718 SAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIK 761
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 118/455 (25%), Positives = 215/455 (47%), Gaps = 45/455 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK HA + T ++V N LI Y + + A +FD MP RD SWN ++ Y
Sbjct: 61 GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAG 120
Query: 62 FSDSGEVLILFKQL---------IFE------GIVADKITLVILFSACARLEKLHYGKTV 106
D G LF + +F+ G V D+ T ++ +C+ LE G +
Sbjct: 121 RGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQI 180
Query: 107 HCYATKVGLEYMLNMENALLLMYAKCKEMDEALR----LFDEMGSRRNIVSLN------- 155
H A K+G + + +ALL MYAKC ++ LR LF EM + + +L
Sbjct: 181 HGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEM-QKAGVGALQLHGHALK 239
Query: 156 -------ILINGYIDM-----ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
++ +DM L D + ++F+ + + ++ + +++ G ++ + EAL
Sbjct: 240 TDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALG 299
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
+F+ + G+ DE + AC+ + G VH +++ + V A++DMY
Sbjct: 300 MFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYG 359
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KCG+L EA + F + +D V+W +I G + L +F M + G++P+E T+ S
Sbjct: 360 KCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGS 419
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMP 381
VL AC + G ++ R + + + ++ FV L+D+ S+ G++ +AE+ +
Sbjct: 420 VLKACAGWQALNCGMEIHNR---IIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRL- 475
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
AE +S+ A++S + + +K + M+++G
Sbjct: 476 AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG 510
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 86/374 (22%), Positives = 146/374 (39%), Gaps = 75/374 (20%)
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
++ K T +F C+ + L GK H + + + N L+ MY KC ++
Sbjct: 35 YQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLG 94
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A ++FD M +R+ VS N ++ GY + +A+++FD + GC
Sbjct: 95 FAFKVFDGM-PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGT----------GC---- 139
Query: 197 QPEEALELFK-KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK 255
+ELF +M G D VL +CSSL + G +H ++ D
Sbjct: 140 ---GVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTG 196
Query: 256 TALIDMYSKC--------GSLE-----------------EALVTFYKTD----------- 279
+AL+DMY+KC G LE AL T + TD
Sbjct: 197 SALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMY 256
Query: 280 --CKDVV----------------TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
C ++ ++ +I G A G EAL +F +++ G+ +E +
Sbjct: 257 MKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSL 316
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
AC EG Q+ + Q I ++D+ + G L +A + M
Sbjct: 317 SGAXRACAVIKGDLEGLQV-HGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMV 375
Query: 382 AEDKFISYKALLSA 395
+ D +S+ A+++A
Sbjct: 376 SRDA-VSWNAIIAA 388
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 7/163 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA + K L SD Y+ ++L+ Y + D +++F+K P RD +WN ++ Y
Sbjct: 533 LGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYA 592
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLE 116
E L +F+ + E + + T + + AC + + LHY H + GL+
Sbjct: 593 QHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHY---FHSMLSNYGLD 649
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
L + ++ + + ++ +AL L + M + V L++
Sbjct: 650 PQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLS 692
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
++K P + L + + ++ + CS L G+ H ++ F
Sbjct: 19 QSKSPFKTLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVF 78
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF------- 306
V LI MY KC L A F +D V+W M+ G A G A ++F
Sbjct: 79 VTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTG 138
Query: 307 --------YQMERKGIKPNEATFVSVLAAC 328
++M R G + TF VL +C
Sbjct: 139 CGVVELFDFRMGRMGTVFDRTTFAVVLKSC 168
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 148/464 (31%), Positives = 256/464 (55%), Gaps = 36/464 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H K+ S+I V N+++ YG+ +A ++F++M RD SWN +++ +
Sbjct: 395 GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQ 454
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH--CYATKVGLEYML 119
+ + L LF ++ G+ D+ T + ACA + L+ G +H +++GL+ +
Sbjct: 455 NGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFV 514
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ AL+ MY+KC M++A +L D + +
Sbjct: 515 GI--ALIDMYSKCGMMEKAEKLHDRL--------------------------------AE 540
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+ +V W +++ G KQ EEA + F KM++ GV PD ++L C++L ++ G+ +
Sbjct: 541 QTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQI 600
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H I++ + DA++ + L+DMYSKCG++++ + F K +D VTW M+ G A +GLG
Sbjct: 601 HAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLG 660
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL++F M+ + +KPN ATF++VL AC H GL+ +G F M Y + P +EH+ C
Sbjct: 661 EEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSC 720
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VD++ R+G + +A E I+ MP E + ++ LLS C + ++ +K A ++++L +
Sbjct: 721 VVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPED 780
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AYVLLSN YA G W EV + R+ M+ +K+PG S I++K
Sbjct: 781 SAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIK 824
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 113/411 (27%), Positives = 197/411 (47%), Gaps = 43/411 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH H KT +D+ +G + + Y + +DA+ LF+ +P ++ S+N ++ Y
Sbjct: 293 LGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYA 352
Query: 61 DFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
SD G E L +F+ L G+ D+++L F ACA ++ G VH + K + +
Sbjct: 353 R-SDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNI 411
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NA+L MY KC + EA +F+EM SR
Sbjct: 412 CVANAILDMYGKCGALVEACLVFEEMVSR------------------------------- 440
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D V W +++ + E+ L LF M+ G+ PDE SVL AC+ L G +
Sbjct: 441 -DAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEI 499
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H I+++ + D+FV ALIDMYSKCG +E+A + + VV+W +I G +
Sbjct: 500 HNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQS 559
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA + F +M G+ P+ T+ ++L C + + G Q+ + + + + + ++
Sbjct: 560 EEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQ---IIKKELQSDAYIS 616
Query: 360 --LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
LVD+ S+ G + + + P D F+++ A++ Y++ LG++
Sbjct: 617 STLVDMYSKCGNMQDFQLIFEKAPNRD-FVTWNAMVCG---YAQHGLGEEA 663
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 175/379 (46%), Gaps = 34/379 (8%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D N+++ Y A+ LFD MP RDV SWN+L+S Y D +V+ +F Q+
Sbjct: 107 DTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMG 166
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
G V D+ T ++ +C+ LE G +H A K+G + + +ALL MYAKCK++D
Sbjct: 167 RMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLD 226
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+++ F M +K+ V W +++ GCV+
Sbjct: 227 CSIQFFHSM--------------------------------PEKNWVSWSAIIAGCVQND 254
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
LELFK+M GV + SV +C+ LS L+ G +H L+ + D + T
Sbjct: 255 DLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGT 314
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
A +DMY KC +L +A F ++ ++ +I G A G EAL +F +++ G+
Sbjct: 315 ATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGL 374
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
+E + AC EG Q+ + Q I ++D+ + G L +A
Sbjct: 375 DEVSLSGAFRACAVIKGDLEGLQV-HGLSMKSLCQSNICVANAILDMYGKCGALVEACLV 433
Query: 377 IKIMPAEDKFISYKALLSA 395
+ M + D +S+ A+++A
Sbjct: 434 FEEMVSRDA-VSWNAIIAA 451
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 110/419 (26%), Positives = 194/419 (46%), Gaps = 42/419 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IY 59
G +H K D D+ G++L+ Y + + F MP ++ SW+ +++ +
Sbjct: 193 GIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQ 252
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
ND G L LFK++ G+ + T +F +CA L L G +H +A K +
Sbjct: 253 NDDLRGG--LELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDV 310
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ A L MY KC + +A +LF+ + N+ S N +I GY AR D
Sbjct: 311 VIGTATLDMYMKCNNLSDAQKLFNSL-PNHNLQSYNAIIVGY--------ARS------D 355
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K I EAL +F+ + G+ DE + AC+ + G V
Sbjct: 356 KGI-----------------EALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQV 398
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +++ + V A++DMY KCG+L EA + F + +D V+W +I G
Sbjct: 399 HGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNE 458
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV- 358
+ L +F M + G++P+E T+ SVL AC + G ++ R + + + ++ FV
Sbjct: 459 EKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNR---IIKSRLGLDSFVG 515
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L+D+ S+ G++ +AE+ + AE +S+ A++S + + +K + M+++G
Sbjct: 516 IALIDMYSKCGMMEKAEKLHDRL-AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG 573
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 132/264 (50%), Gaps = 1/264 (0%)
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
++ K T +F C+ + L GK H + + + N L+ MY KC +++
Sbjct: 35 YQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLE 94
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A ++FD M +R+ VS N ++ GY + +A+++FD + ++D+V W S++ G +
Sbjct: 95 FAFKVFDGM-PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNG 153
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
+ +++F +M G D VL +CSSL + G +H ++ D +
Sbjct: 154 DHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGS 213
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
AL+DMY+KC L+ ++ F+ K+ V+W+ +I G L +F +M++ G+
Sbjct: 214 ALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGV 273
Query: 317 NEATFVSVLAACRHSGLITEGCQL 340
+++TF SV +C + G QL
Sbjct: 274 SQSTFASVFRSCAGLSALRLGSQL 297
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 7/163 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA + K L SD Y+ ++L+ Y + D +++F+K P RD +WN ++ Y
Sbjct: 596 LGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYA 655
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLE 116
E L +F+ + E + + T + + AC + + LHY H + GL+
Sbjct: 656 QHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHY---FHSMLSNYGLD 712
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
L + ++ + + ++ +AL L + M + V L++
Sbjct: 713 PQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLS 755
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 105/273 (38%), Gaps = 46/273 (16%)
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
++K P + L + + ++ + CS L G+ H ++ F
Sbjct: 19 QSKSPFKTLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVF 78
Query: 254 VKTALIDMYSKCGSLEEALVTF---YKTDC----------------------------KD 282
V LI MY KC LE A F + D +D
Sbjct: 79 VTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERD 138
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR----HSGLIT-EG 337
VV+W ++I G + G + + VF QM R G + TF VL +C H G I G
Sbjct: 139 VVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHG 198
Query: 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
L +MG + L+D+ ++ L + +F MP E ++S+ A+++ C+
Sbjct: 199 --LAVKMG----FDCDVVTGSALLDMYAKCKKLDCSIQFFHSMP-EKNWVSWSAIIAGCV 251
Query: 398 TYSEFDLGKKVANNMMKLG---NQSHEAYVLLS 427
+ G ++ M K G +QS A V S
Sbjct: 252 QNDDLRGGLELFKEMQKAGVGVSQSTFASVFRS 284
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 155/461 (33%), Positives = 250/461 (54%), Gaps = 41/461 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +H+HV K D +VGN+LI Y + F+DAR +FD+MP RDV SWNT M+
Sbjct: 25 RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMA----- 79
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
++ EG +A + LF + + +
Sbjct: 80 -----------AMVREGELAG---VRKLFDEMPEKDTVSW-------------------- 105
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N +L Y K E++ A LF M RN+VS + +++GY +++AR +FD++ K++
Sbjct: 106 NTILDGYTKAGEVEAAFELFQRM-PERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNL 164
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W M+ C + +EA +LF +M + V D +VS+L+AC+ +L G+ +HR+
Sbjct: 165 VTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRY 224
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + N+ + V ALIDM+ KCG + A F +T KD V+W ++I G A +G G++
Sbjct: 225 VRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDK 284
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F QM+++G P+ T ++VL+AC H G + EG + F M Y + P IEH+ C++
Sbjct: 285 ALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMI 344
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R GL+ +A + IK MP E + + +LLSAC + + + N + KL +
Sbjct: 345 DLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAG 404
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y +LSN YA G W+++A+AR MK ++K G+S ++L
Sbjct: 405 NYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVEL 445
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLMSIY 59
+GK +H +V K L +V N+LI + + A +FD +D SWN+++ +
Sbjct: 217 LGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGF 276
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
+ L LF Q+ +G D +T++ + SAC + + G+
Sbjct: 277 AMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGR 321
>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 787
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 251/447 (56%), Gaps = 2/447 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ +L+ Y + AR + D+MP R+ SW TL++ + ++ E + L+ Q++
Sbjct: 311 DVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQML 370
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+G + + ACA L+ L G+ +H K+ + + +AL+ MY KCK++
Sbjct: 371 ADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLP 430
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+A +F + ++NIV N LI+GY + + A E+F ++ +++ W S++ G + +
Sbjct: 431 DAQMIFYSL-PQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNR 489
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
Q +AL+ F M+ G +P E SVL AC+SL +L+ G++VH I++ I + FV T
Sbjct: 490 QFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGT 549
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
AL DMY+K G L+ + FY+ ++ V WT MI+GLA G E++ +F M GI P
Sbjct: 550 ALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITP 609
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
NE TF+++L AC HSGL+ F M + P +H+ C+VD+L+RAG L +AE+
Sbjct: 610 NEQTFLAILFACSHSGLVEHAMHYFEMMQAC-GISPKAKHYTCMVDVLARAGHLAEAEDL 668
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436
+ + ++ + S+ ALLSAC Y ++G++ A + +L + YVLLSN YA G W
Sbjct: 669 LLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKW 728
Query: 437 TEVAEARRNMKELQTRKKPGNSIIDLK 463
+ AE R MK + +K G S + ++
Sbjct: 729 KDAAEMRILMKGINLKKDGGCSWVQIR 755
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 116/451 (25%), Positives = 207/451 (45%), Gaps = 78/451 (17%)
Query: 37 ARVLFDKMPFRDVGSWNTLMS---------------------------------IYNDFS 63
AR LFD MP R V S+ T++ + N+
Sbjct: 167 ARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELP 226
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL-EYMLNME 122
+ L +F +++ G+ ++ITLV + AC + ++ A K L + L +
Sbjct: 227 K--DALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVR 284
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N+L+ +Y + + D A R+FDEM R++VS L++ Y ++ ++ AR V DE+ +++
Sbjct: 285 NSLITLYLRKGDADAARRMFDEM-EVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNE 343
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +++ + +EA+ L+ +M+ +G P+ SVL AC+SL +L+ GR +H
Sbjct: 344 VSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQ 403
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
L+ + + FV +ALIDMY KC L +A + FY K++V W ++I G +N EA
Sbjct: 404 TLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEA 463
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
+F +M + N A++ S+++ + + + F M
Sbjct: 464 EELFKKMPAR----NVASWNSIISGYAQNRQFIDALKSFHAM------------------ 501
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG-NQSHE 421
L + P E I++ ++L AC + ++GK V ++KLG +S
Sbjct: 502 -------LASGQS-----PGE---ITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIF 546
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
LS+ YA G ++ ++R E+ R
Sbjct: 547 VGTALSDMYAKSG---DLDSSKRVFYEMPKR 574
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 152/356 (42%), Gaps = 71/356 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K A ++++V ++LI Y + DA+++F +P +++ WN+L+S Y++
Sbjct: 397 GRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSN 456
Query: 62 FSDSGEVLILFKQ-------------------------------LIFEGIVADKITLVIL 90
S E LFK+ ++ G +IT +
Sbjct: 457 NSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSV 516
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
ACA L L GK VH K+G++ + + AL MYAK ++D + R+F EM R +
Sbjct: 517 LLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRND 576
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+ W +M+ G + EE++ LF+ MI
Sbjct: 577 VA--------------------------------WTAMIQGLAENGFAEESILLFEDMIS 604
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+TP+E+ +++L ACS +++ + I+ A T ++D+ ++ G L E
Sbjct: 605 AGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAE 664
Query: 271 ALVTFYKTDCK-DVVTWTTMIEGL---ANYGLGNEALRVFYQMERKGIKPNEATFV 322
A K + K + +W ++ N +G A + +++ K N A +V
Sbjct: 665 AEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELD----KDNTAGYV 716
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MGK +HA + K + I+VG +L Y + ++ +F +MP R+ +W ++
Sbjct: 528 MGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLA 587
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLE 116
+ + E ++LF+ +I GI ++ T + + AC+ +HY + + +
Sbjct: 588 ENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAK 647
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI---NGYIDMELVDLAREV 173
+ M + L A+ + EA L ++ S+ S L+ N Y + E+ + A +
Sbjct: 648 HYTCMVDVL----ARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKR 703
Query: 174 FDEIVDKD----IVLWRSMMHGCVKAKQPEEALELFK 206
E+ DKD VL +M C K K E L K
Sbjct: 704 LQEL-DKDNTAGYVLLSNMYASCGKWKDAAEMRILMK 739
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 167/503 (33%), Positives = 257/503 (51%), Gaps = 42/503 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
+ +H + + DSD +V +SL+H Y + DA +FD+M DV SW+ L++ Y
Sbjct: 133 ARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYAR 192
Query: 60 -----------NDFSDSG----------------------EVLILFKQLIFEGIVADKIT 86
++ DSG E +++F + G D T
Sbjct: 193 QGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTT 252
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+ + A LE L G +H Y K GL + +AL+ MY KC E ++FD+M
Sbjct: 253 ISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQM- 311
Query: 147 SRRNIVSLNILI-----NGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
++ S N I NG ++ L L R++ D+ ++ ++V W SM+ C + + EA
Sbjct: 312 DHMDVGSCNAFIFGLSRNGQVESSL-RLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEA 370
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
LELF++M GV P+ + +L AC +++ L +G+ H F L+ I+ D +V +ALIDM
Sbjct: 371 LELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDM 430
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y+KCG ++ + + F K++V W +I G A +G EA+ +F M+R G KP+ +F
Sbjct: 431 YAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISF 490
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
VL+AC SGL EG F M Y ++ +EH+ C+V LLSRAG L QA I+ MP
Sbjct: 491 TCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMP 550
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
+ ALLS+C ++ LG+ A + +L + Y+LLSN YA +G W EV
Sbjct: 551 VNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNR 610
Query: 442 ARRNMKELQTRKKPGNSIIDLKH 464
R MK RK PG S I++K+
Sbjct: 611 VRDMMKNKGLRKNPGCSWIEVKN 633
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/360 (30%), Positives = 183/360 (50%), Gaps = 6/360 (1%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HAH+ KT L +D ++ L+ Y F DA ++ D +P +V S++TL+ ++ F
Sbjct: 36 HAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQF 95
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
L F Q++ G++ D L ACA L L + VH A+ G + ++++L
Sbjct: 96 HHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSL 155
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI----VDKD 181
+ MY KC ++ +A R+FD M ++VS + L+ Y VD A+ +F E+ V +
Sbjct: 156 VHMYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPN 214
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W M+ G + EA+ +F M G PD + SVL A L +L G L+H
Sbjct: 215 LISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHG 274
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++++ + D V +ALIDMY KC E F + D DV + I GL+ G
Sbjct: 275 YVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVES 334
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
+LR+F Q++ +G++ N ++ S++A C +G E +LFR M + V+P CL+
Sbjct: 335 SLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREM-QIAGVKPNSVTIPCLL 393
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 156/365 (42%), Gaps = 53/365 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTL----- 55
MG +H +V K L SD V ++LI YG+ + ++ +FD+M DVGS N
Sbjct: 268 MGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLS 327
Query: 56 --------MSIYNDFSDSG----------------------EVLILFKQLIFEGIVADKI 85
+ ++ D G E L LF+++ G+ + +
Sbjct: 328 RNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSV 387
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T+ L AC + L +GK HC++ + G+ + + +AL+ MYAKC + + FD +
Sbjct: 388 TIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGI 447
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEI----VDKDIVLWRSMMHGCVKAKQPEEA 201
+ +N+V N +I GY A E+FD + DI+ + ++ C ++ EE
Sbjct: 448 PT-KNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEG 506
Query: 202 LELFKKMIDE-GVTPDEE---VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
F M + G+ E MV++LS L + I + + DA V A
Sbjct: 507 SYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQ------AYAMIRRMPVNPDACVWGA 560
Query: 258 LID---MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
L+ +++ E A ++ + + + + A+ G+ NE RV M+ KG+
Sbjct: 561 LLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGL 620
Query: 315 KPNEA 319
+ N
Sbjct: 621 RKNPG 625
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 8/196 (4%)
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
S+ ++L R H IL+ + D + T L+ Y+ +A + +V +++
Sbjct: 24 STTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFS 83
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
T+I + + + AL F QM +G+ P+ S + AC +GL + R++ G+
Sbjct: 84 TLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKAC--AGL--SALKPARQVHGI 139
Query: 348 YRVQP-TIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDL 404
V + FV LV + + + A M E +S+ AL++A D
Sbjct: 140 ASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAAYARQGCVDE 198
Query: 405 GKKVANNMMKLGNQSH 420
K++ + M G Q +
Sbjct: 199 AKRLFSEMGDSGVQPN 214
>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 169/463 (36%), Positives = 243/463 (52%), Gaps = 38/463 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H VTK DIYV NSL+HFYG +A +F +MP RDV SW +++ +
Sbjct: 125 GKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTR 184
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L F ++ E +A T V + + R+ L GK +H K L
Sbjct: 185 TGLYKEALDTFSKMDVEPNLA---TYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLET 241
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC+++ + A VF E+ KD
Sbjct: 242 GNALIDMYVKCEQLSD--------------------------------AMRVFGELEKKD 269
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
V W SM+ G V ++ +EA++LF M G+ PD ++ SVLSAC+SL + +GR VH
Sbjct: 270 KVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVH 329
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+IL I D + TA++DMY+KCG +E AL F K+V TW ++ GLA +G G
Sbjct: 330 EYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGL 389
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV-YRVQPTIEHFVC 359
E+LR F +M + G KPN TF++ L AC H+GL+ EG + F +M Y + P +EH+ C
Sbjct: 390 ESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKLEHYGC 449
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF-DLGKKVANNMMKLGNQ 418
++DLL RAGLL +A E +K MP + A+LSAC +L K++ ++ + + +
Sbjct: 450 MIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSACKNRGTLMELPKEILDSFLDIEFE 509
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YVLLSN +A W +VA RR MK K PG+S I+
Sbjct: 510 DSGVYVLLSNIFAANRRWDDVARIRRLMKVKGISKVPGSSYIE 552
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 122/466 (26%), Positives = 199/466 (42%), Gaps = 57/466 (12%)
Query: 9 VTKTALDSDIYVGNSLIHFYGRMALFTD--ARVLFDKMPFRDVGSWNTLMSIYNDFSDSG 66
+T+ L D+ + N ++ F G+ A F + +L S+NTL+S Y
Sbjct: 30 ITRDLLRDDLII-NKVVTFLGKSADFASYSSVILHSIRSVLSSFSYNTLLSSYAVCDKPR 88
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
+ +K + G D T +F AC + + GK +H TK+G + ++N+L+
Sbjct: 89 VTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLV 148
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
Y C E A ++F EM R D+V W
Sbjct: 149 HFYGVCGESRNACKVFGEMPVR--------------------------------DVVSWT 176
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
++ G + +EAL+ F KM V P+ V VL + + L G+ +H IL+
Sbjct: 177 GIITGFTRTGLYKEALDTFSKM---DVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKR 233
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
ALIDMY KC L +A+ F + + KD V+W +MI GL + EA+ +F
Sbjct: 234 ASLISLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLF 293
Query: 307 YQME-RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE---HF-VCLV 361
M+ GIKP+ SVL+AC G + G R Y + I+ H +V
Sbjct: 294 SLMQTSSGIKPDGHILTSVLSACASLGAVDHG-----RWVHEYILTAGIKWDTHIGTAIV 348
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+ ++ G + A E + +++ F ++ ALL + + M+KLG + +
Sbjct: 349 DMYAKCGYIETALEIFNGIRSKNVF-TWNALLGGLAIHGHGLESLRYFEEMVKLGFKPN- 406
Query: 422 AYVLLSNFYALEG--HWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
L++ AL H V E RR ++++R+ N L+HY
Sbjct: 407 ---LVTFLAALNACCHTGLVDEGRRYFHKMKSREY--NLFPKLEHY 447
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 148/337 (43%), Gaps = 65/337 (19%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GKG+H + K A + GN+LI Y + +DA +F ++ +D SWN+++S
Sbjct: 222 LGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLV 281
Query: 61 DFSDSGEVLILFKQL-IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
S E + LF + GI D L + SACA L + +G+ VH Y G+++
Sbjct: 282 HCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDT 341
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ A++ MYAKC GYI+ L E+F+ I
Sbjct: 342 HIGTAIVDMYAKC---------------------------GYIETAL-----EIFNGIRS 369
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K++ W +++ G E+L F++M+ G P+ ++ L+AC + GR
Sbjct: 370 KNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGR-- 427
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
R+ + +K+ +++ K LE + MI+ L GL
Sbjct: 428 -RYFHK--------MKSREYNLFPK---LEH---------------YGCMIDLLCRAGLL 460
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
+EAL + M +KP+ ++L+AC++ G + E
Sbjct: 461 DEALELVKAMP---VKPDVRICGAILSACKNRGTLME 494
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 158/462 (34%), Positives = 243/462 (52%), Gaps = 32/462 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H V K D D++V SL+ Y + DA +FD +P ++V SW ++S Y
Sbjct: 130 LGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYI 189
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E + +F++L+ + D T+V + SAC +L L+ G+ +H ++G+ +
Sbjct: 190 GVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVF 249
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +L+ MYAKC M++ AR VFD + +K
Sbjct: 250 VGTSLVDMYAKCGNMEK--------------------------------ARSVFDGMPEK 277
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIV W +M+ G P+EA++LF +M E V PD +V VLSAC+ L L+ G V
Sbjct: 278 DIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVS 337
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ +N + + TALID+Y+KCGS+ A F KD V W +I GLA G
Sbjct: 338 GLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVK 397
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+ +F Q+E+ GIKP+ TF+ +L C H+GL+ EG + F M + + P+IEH+ C+
Sbjct: 398 ISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCM 457
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A + I+ MP E I + ALL AC + + L + +++L +
Sbjct: 458 VDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNS 517
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN Y+ W E A+ R +M E + +K PG S I++
Sbjct: 518 GNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEV 559
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 195/371 (52%), Gaps = 49/371 (13%)
Query: 34 FTDA---RVLFDKMPFRDVGSWNTLMS--IYND-FSDSGEVLILFKQLIFEGIVADKITL 87
F+D R LF ++ ++ WNT++ + ND F D+ E L + EG + + T
Sbjct: 59 FSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRS---EGFLPNNFTF 115
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ ACARL L G +H K G + + ++ +L+ +YAKC +++A ++FD++
Sbjct: 116 PFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDI-P 174
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
+N+VS +I+GYI + + EA+++F++
Sbjct: 175 DKNVVSWTAIISGYIGV-------------------------------GKFREAIDMFRR 203
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
+++ + PD +V VLSAC+ L +L G +H+ I++ + ++ FV T+L+DMY+KCG+
Sbjct: 204 LLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGN 263
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+E+A F KD+V+W MI+G A GL EA+ +F QM+R+ +KP+ T V VL+A
Sbjct: 264 MEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSA 323
Query: 328 CRHSGLITEG---CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
C G + G L R +Y P + L+DL ++ G + +A E K M +D
Sbjct: 324 CARLGALELGEWVSGLVDRNEFLY--NPVLG--TALIDLYAKCGSMSRAWEVFKGMKEKD 379
Query: 385 KFISYKALLSA 395
+ + + A++S
Sbjct: 380 RVV-WNAIISG 389
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 12/247 (4%)
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
LN+++ D + R +F +I +I LW +M+ G V ++A+E + M EG
Sbjct: 49 LNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGF 108
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
P+ VL AC+ L +LQ G +H +++ D FVKT+L+ +Y+KCG LE+A
Sbjct: 109 LPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHK 168
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F K+VV+WT +I G G EA+ +F ++ + P+ T V VL+AC G
Sbjct: 169 VFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGD 228
Query: 334 ITEGCQLFR---RMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
+ G + + MG V V FV LVD+ ++ G + +A MP +D +S
Sbjct: 229 LNSGEWIHKCIMEMGMVRNV------FVGTSLVDMYAKCGNMEKARSVFDGMPEKD-IVS 281
Query: 389 YKALLSA 395
+ A++
Sbjct: 282 WGAMIQG 288
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 155/461 (33%), Positives = 250/461 (54%), Gaps = 41/461 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +H+HV K D +VGN+LI Y + F+DAR +FD+MP RDV SWNT M+
Sbjct: 148 RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAA---- 203
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
++ EG +A + LF + + +
Sbjct: 204 ------------MVREGELAG---VRKLFDEMPEKDTVSW-------------------- 228
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N +L Y K E++ A LF M RN+VS + +++GY +++AR +FD++ K++
Sbjct: 229 NTILDGYTKAGEVEAAFELFQRM-PERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNL 287
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W M+ C + +EA +LF +M + V D +VS+L+AC+ +L G+ +HR+
Sbjct: 288 VTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRY 347
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + N+ + V ALIDM+ KCG + A F +T KD V+W ++I G A +G G++
Sbjct: 348 VRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDK 407
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F QM+++G P+ T ++VL+AC H G + EG + F M Y + P IEH+ C++
Sbjct: 408 ALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMI 467
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R GL+ +A + IK MP E + + +LLSAC + + + N + KL +
Sbjct: 468 DLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAG 527
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y +LSN YA G W+++A+AR MK ++K G+S ++L
Sbjct: 528 NYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVEL 568
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLMSIY 59
+GK +H +V K L +V N+LI + + A +FD +D SWN+++ +
Sbjct: 340 LGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGF 399
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
+ L LF Q+ +G D +T++ + SAC + + G+
Sbjct: 400 AMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGR 444
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 160/494 (32%), Positives = 256/494 (51%), Gaps = 65/494 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY---GRM-------------------ALFT---- 35
G+ +H HV K + D+YV SLI Y GR+ AL T
Sbjct: 85 GQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYAS 144
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
A+ +FD++P +DV SWN ++S Y + E L LFK+++ + D+ T+V +
Sbjct: 145 SGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTV 204
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+ + G+ VH + G L + NAL+ +Y+KC +++ A LF+ +
Sbjct: 205 LSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSC--- 261
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
KD+V W +++ G +EAL LF++M+
Sbjct: 262 -----------------------------KDVVSWNTLIGGYTHMNLYKEALLLFQEMLR 292
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN--NITQDAFVKTALIDMYSKCGSL 268
G +P++ +VS+L AC+ L + GR +H +I + ++T ++T+LIDMY+KCG +
Sbjct: 293 SGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDI 352
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E A F K + +W MI G A +G N +F +M + GI+P++ TFV +L+AC
Sbjct: 353 EAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSAC 412
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
HSG + G +F+ M Y + P +EH+ C++DLL +GL +A+E IK MP E +
Sbjct: 413 SHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVI 472
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+ +LL AC + +L + A N+MK+ ++ +YVLLSN YA G W EVA+ R +
Sbjct: 473 WCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNG 532
Query: 449 LQTRKKPGNSIIDL 462
+K PG S I++
Sbjct: 533 KGMKKVPGCSSIEI 546
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 130/401 (32%), Positives = 202/401 (50%), Gaps = 42/401 (10%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WNT++ Y SD L L+ +I G++ + T L +CA+ + G+ +H +
Sbjct: 34 WNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVL 93
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K+G E L + +L+ MYA+ +++A ++FD S R++VS LI GY + A+
Sbjct: 94 KLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDR-SSHRDVVSYTALITGYASSGNIRSAQ 152
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
E+FDEI KD+V W +M+ G + +EALELFK+M+ V PDE MV+VLSAC+
Sbjct: 153 EMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSR 212
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
+++ GR VH +I + + + ALID+YSKCG +E A F CKDVV+W T+I
Sbjct: 213 SVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIG 272
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF----RRMGGV 347
G + L EAL +F +M R G PN+ T VS+L AC H G I G + +++ V
Sbjct: 273 GYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDV 332
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM--------------------------- 380
P++ L+D+ ++ G + A + M
Sbjct: 333 TNA-PSLR--TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDL 389
Query: 381 -------PAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
E I++ LLSAC + DLG+ + +M +
Sbjct: 390 FSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQ 430
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 163/372 (43%), Gaps = 73/372 (19%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ + S++ + N+LI Y + A LF+ + +DV SWNTL+ Y
Sbjct: 216 LGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYT 275
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L+LF++++ G + +T+V + ACA L + G+ +H Y K L+ + N
Sbjct: 276 HMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDK-KLKDVTN 334
Query: 121 ---MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ +L+ MYAKC +++ A +VF+ +
Sbjct: 335 APSLRTSLIDMYAKCGDIEAA--------------------------------HQVFNSM 362
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+ K + W +M+ G + +LF +M G+ PD+ V +LSACS L GR
Sbjct: 363 LHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGR 422
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+ + ++TQD Y LE + MI+ L + G
Sbjct: 423 HIFK-----SMTQD----------YDITPKLEH---------------YGCMIDLLGHSG 452
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEH 356
L EA + M ++P+ + S+L ACR G + E + F R + +V+P
Sbjct: 453 LFKEAKEMIKTMP---MEPDGVIWCSLLKACRRHGNL-ELAESFAR--NLMKVEPENPGS 506
Query: 357 FVCLVDLLSRAG 368
+V L ++ + AG
Sbjct: 507 YVLLSNIYATAG 518
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 152/333 (45%), Gaps = 46/333 (13%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A VF I + + ++W +M+ G + P AL+L+ MI G+ P+ +L +C+
Sbjct: 19 AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE-----------------AL 272
+ G+ +H +L+ D +V T+LI MY++ G LE+ AL
Sbjct: 79 SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138
Query: 273 VTFYKTD--------------CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
+T Y + KDVV+W MI G A G EAL +F +M + ++P+E
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
T V+VL+AC S + G Q+ + + ++ L+DL S+ G + A +
Sbjct: 199 GTMVTVLSACAQSRSVELGRQVHSWIDD-HGFGSNLKIVNALIDLYSKCGQVETACGLFE 257
Query: 379 IMPAEDKFISYKALLSACITYSEFDLGKKVA---NNMMKLGNQSHEAYVL-----LSNFY 430
+ +D +S+ L+ Y+ +L K+ M++ G ++ ++ ++
Sbjct: 258 GLSCKD-VVSWNTLIGG---YTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLG 313
Query: 431 ALE-GHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A++ G W V ++ +K++ S+ID+
Sbjct: 314 AIDIGRWIHVYIDKK-LKDVTNAPSLRTSLIDM 345
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 255/463 (55%), Gaps = 2/463 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ ++A + + ++ + + ++L+ Y + A+ LFD+ ++ N + S Y
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L +F ++ G+ D+I+++ S+C++L + +GK+ H Y + G E N+
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI 374
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC D A R+FD M S + +V+ N ++ GY++ VD A E F+ + +K+
Sbjct: 375 CNALIDMYMKCHRQDTAFRIFDRM-SNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKN 433
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
IV W +++ G V+ EEA+E+F M EGV D M+S+ SAC L L + ++
Sbjct: 434 IVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIY 493
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I +N I D + T L+DM+S+CG E A+ F +DV WT I +A G
Sbjct: 494 YYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAE 553
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ +F M +G+KP+ FV L AC H GL+ +G ++F M ++ V P H+ C+
Sbjct: 554 RAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCM 613
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A + I+ MP E + + +LL+AC ++ A + L +
Sbjct: 614 VDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERT 673
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+YVLLSN YA G W ++A+ R +MKE RK PG S I ++
Sbjct: 674 GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIR 716
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/414 (29%), Positives = 186/414 (44%), Gaps = 92/414 (22%)
Query: 2 GKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
G G+ H + K D++V NSL+HFY AR +FD+M R+V SW +++ Y
Sbjct: 151 GNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGY 210
Query: 60 --NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
DF+ V + F+ + E + + +T+V + SACA+LE L G+ V+ + G+E
Sbjct: 211 ARRDFAKDA-VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEV 269
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
M +AL+ MY KC +D A RLFDE G+ N+ N + + Y+ L
Sbjct: 270 NDLMVSALVDMYMKCNAIDVAKRLFDEYGA-SNLDLCNAMASNYVRQGLT---------- 318
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
EAL +F M+D GV PD M+S +S+CS L N+ +G+
Sbjct: 319 ---------------------REALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGK 357
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKC-------------------------------G 266
H ++L+N + ALIDMY KC G
Sbjct: 358 SCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENG 417
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME-RKGIKPNEATFVSVL 325
++ A TF K++V+W T+I GL L EA+ VF M+ ++G+ + T +S+
Sbjct: 418 EVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIA 477
Query: 326 AACRHSGLI-----------TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
+AC H G + G QL R+G LVD+ SR G
Sbjct: 478 SACGHLGALDLAKWIYYYIEKNGIQLDVRLG------------TTLVDMFSRCG 519
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 160/335 (47%), Gaps = 41/335 (12%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM---SIY 59
K H +TK LD+D+ L+ L T + F K F + S+ T S+
Sbjct: 49 KMFHRSLTKQGLDNDVSTITKLVAR--SCELGTRESLSFAKEVFENSESYGTCFMYNSLI 106
Query: 60 NDFSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
++ SG E ++LF +++ GI DK T SACA+ G +H K+G
Sbjct: 107 RGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYA 166
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
L ++N+L+ YA+C E+D A ++FDEM S RN+VS
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEM-SERNVVS----------------------- 202
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI-DEGVTPDEEVMVSVLSACSSLSNLQY 235
W SM+ G + ++A++LF +M+ DE VTP+ MV V+SAC+ L +L+
Sbjct: 203 --------WTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G V+ FI + I + + +AL+DMY KC +++ A F + ++ M
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
GL EAL VF M G++P+ + +S +++C
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 110/207 (53%), Gaps = 10/207 (4%)
Query: 131 KCKEMDEALRLF----DEMGSRRNIVSLNILINGYIDM---ELVDLAREVFDEIVD-KDI 182
CK +DE L++F + G ++ ++ L+ ++ E + A+EVF+
Sbjct: 41 NCKTIDE-LKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTC 99
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
++ S++ G + EA+ LF +M++ G++PD+ LSAC+ G +H
Sbjct: 100 FMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGL 159
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
I++ +D FV+ +L+ Y++CG L+ A F + ++VV+WT+MI G A +A
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 219
Query: 303 LRVFYQMER-KGIKPNEATFVSVLAAC 328
+ +F++M R + + PN T V V++AC
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVISAC 246
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 72/159 (45%), Gaps = 1/159 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K ++ ++ K + D+ +G +L+ + R A +F+ + RDV +W +
Sbjct: 488 LAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMA 547
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
++ + LF +I +G+ D + V +AC+ + GK + K+ G+
Sbjct: 548 MAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPED 607
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
++ + + ++EA++L ++M N V N L+
Sbjct: 608 VHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLL 646
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 154/460 (33%), Positives = 246/460 (53%), Gaps = 32/460 (6%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K LH + + L S+ V N+ I Y R + +FD M + V SWN L+ Y
Sbjct: 327 KELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQN 386
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
SD + L L+ Q+ G+ D T+ L AC+R++ LHYG+ +H +A + GL +
Sbjct: 387 SDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIG 446
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
+LL +Y C + A LFD M R +
Sbjct: 447 ISLLSLYICCGKPFAAQVLFDGMEHR--------------------------------SL 474
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W M+ G + P+EA+ LF++M+ +G+ P E ++ V ACS LS L+ G+ +H F
Sbjct: 475 VSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCF 534
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
L+ ++T+D FV +++IDMY+K G + + F + KDV +W +I G +G G EA
Sbjct: 535 ALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEA 594
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F +M R G+KP++ TF +L AC H+GL+ +G + F +M ++ ++P +EH+ C+VD
Sbjct: 595 LELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVD 654
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
+L RAG + A I+ MP + + +LLS+C + LG+KVAN +++L + E
Sbjct: 655 MLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPEN 714
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVL+SN +A G W +V R MK++ +K G S I++
Sbjct: 715 YVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEV 754
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/333 (33%), Positives = 169/333 (50%), Gaps = 38/333 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H TK L SD++VGN+LI YG+ L +A +F+ MP R++ SWN SI
Sbjct: 119 LGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWN---SIIC 175
Query: 61 DFSDSG---EVLILFKQLIF--EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
FS++G E F++++ E V D TLV + CA E + G VH A K+GL
Sbjct: 176 GFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGL 235
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
L + N+L+ MY+KC+ + EA LFD+ ++NIVS N +I GY ARE
Sbjct: 236 NEELMVNNSLIDMYSKCRFLSEAQLLFDK-NDKKNIVSWNSMIGGY--------ARE--- 283
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
E V + L + M Q E+A KM DE +++VL C S LQ
Sbjct: 284 EDVCRTFYLLQKM--------QTEDA-----KM-----KADEFTILNVLPVCLERSELQS 325
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
+ +H + ++ + + V A I Y++CG+L + F D K V +W ++ G A
Sbjct: 326 LKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQ 385
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
+AL ++ QM G+ P+ T S+L AC
Sbjct: 386 NSDPRKALDLYLQMTDSGLDPDWFTIGSLLLAC 418
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 164/337 (48%), Gaps = 44/337 (13%)
Query: 1 MGKGLHAHVT-KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+G+ LH V+ T +D + +I Y +D+R++FDK+ +++ WN ++S Y
Sbjct: 16 VGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAY 75
Query: 60 NDFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ + +F +LI D TL + ACA L L G+ +H ATK+ L
Sbjct: 76 TRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSD 135
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + NAL+ MY KC ++EA+++F+ M RN+VS N +I G+ + +
Sbjct: 136 VFVGNALIAMYGKCGLVEEAVKVFEHM-PERNLVSWNSIICGFSENGFL----------- 183
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMI--DEGVTPDEEVMVSVLSACSSLSNLQYG 236
+E+ F++M+ +E PD +V+VL C+ +++ G
Sbjct: 184 --------------------QESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKG 223
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
VH ++ + ++ V +LIDMYSKC L EA + F K D K++V+W +MI G Y
Sbjct: 224 MAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGG---Y 280
Query: 297 GLGNEALRVFY-----QMERKGIKPNEATFVSVLAAC 328
+ R FY Q E +K +E T ++VL C
Sbjct: 281 AREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVC 317
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 121/257 (47%), Gaps = 44/257 (17%)
Query: 89 ILFSACARLEKLHYGKTVH---CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
+L AC + + + G+ +H +T+ +++LN ++ MY+ C
Sbjct: 3 VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTR--IITMYSMC------------- 47
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
GS + +R VFD++ K++ W +++ + + E+A+ +F
Sbjct: 48 GSPSD-------------------SRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIF 88
Query: 206 KKMIDEGVT---PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
++I VT PD + V+ AC+ L +L G+++H + ++ D FV ALI MY
Sbjct: 89 SELIS--VTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMY 146
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM--ERKGIKPNEAT 320
KCG +EEA+ F +++V+W ++I G + G E+ F +M + P+ AT
Sbjct: 147 GKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVAT 206
Query: 321 FVSVLAACRHSGLITEG 337
V+VL C I +G
Sbjct: 207 LVTVLPVCAGEEDIEKG 223
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 23/157 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH K L DI+V +S+I Y + ++ +FD++ +DV SWN +++ Y
Sbjct: 527 LGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYG 586
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY--- 117
E L LF++++ G+ D T + AC+ H + GLEY
Sbjct: 587 IHGRGKEALELFEKMLRLGLKPDDFTFTGILMACS-----------HAGLVEDGLEYFNQ 635
Query: 118 MLNMEN---------ALLLMYAKCKEMDEALRLFDEM 145
MLN+ N ++ M + +D+ALRL +EM
Sbjct: 636 MLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEM 672
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 6/179 (3%)
Query: 220 MVSVLSACSSLSNLQYGRLVHRFI-LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
M +L AC +++ GR +H + D + T +I MYS CGS ++ + F K
Sbjct: 1 MGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKL 60
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEG 337
K++ W ++ L +A+ +F ++ KP+ T V+ AC +GL+ G
Sbjct: 61 RRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLG 118
Query: 338 C-QLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
Q+ M + + L+ + + GL+ +A + + MP E +S+ +++
Sbjct: 119 LGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMP-ERNLVSWNSIICG 176
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/426 (35%), Positives = 244/426 (57%), Gaps = 6/426 (1%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99
+F ++ + SWN ++ Y++ + L +F +++ G+ D +T L A ARL K
Sbjct: 70 VFSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLVKASARLSK 129
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
G +VH K G E ++N+L+ MYA C + A ++F+ M + N+VS N +++
Sbjct: 130 QKSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESMQGK-NLVSWNSMLD 188
Query: 160 GYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
GY + +A++VF+ + ++D+ W S + G VKA + EA+ +F+KM G +E
Sbjct: 189 GYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEVT 248
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF--YK 277
MVSVLSAC+ L LQ GR++H++I+ N + ++T+L+DMY+KCG++EEAL F
Sbjct: 249 MVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFRGIS 308
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
DV W MI GLA +GL E+L++F +M+ GI+ +E T++ +LAAC H GL+ E
Sbjct: 309 KSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDEITYLCLLAACAHGGLVKEA 368
Query: 338 CQLFRRMGGVYR-VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
F + V R + PT EH+ C+VD+L+RAG L A +FI +P E A+ S C
Sbjct: 369 WNFFESL--VKRGMTPTSEHYACMVDVLARAGQLTTAYQFICQIPIEPTASMLGAIFSGC 426
Query: 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPG 456
I + FDL + V +++L + Y+ LSN YA+ W + R M+ +K PG
Sbjct: 427 INHRNFDLAETVGRKLIELDPNNDGRYIGLSNVYAVVKRWDDSKSMREAMERRGVKKSPG 486
Query: 457 NSIIDL 462
S +++
Sbjct: 487 FSFVEI 492
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 141/306 (46%), Gaps = 54/306 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY--------------------------------- 28
G +HA + KT +SD ++ NSLIH Y
Sbjct: 133 GVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSWNSMLDGYAK 192
Query: 29 -GRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87
G MA+ A+ +F+ M RDV SW++ + Y + E + +F+++ G A+++T+
Sbjct: 193 CGEMAM---AQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEVTM 249
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG- 146
V + SACA L L G+ +H Y L + ++ +L+ MYAKC ++EAL +F +
Sbjct: 250 VSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFRGISK 309
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEI----VDKDIVLWRSMMHGCVKAKQPEEAL 202
S+ ++ N +I G LV+ + ++F E+ + D + + ++ C +EA
Sbjct: 310 SQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDEITYLCLLAACAHGGLVKEAW 369
Query: 203 ELFKKMIDEGVTPDEE---VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
F+ ++ G+TP E MV VL+ L+ ++FI Q I A + L
Sbjct: 370 NFFESLVKRGMTPTSEHYACMVDVLARAGQLTT------AYQFICQIPIEPTA---SMLG 420
Query: 260 DMYSKC 265
++S C
Sbjct: 421 AIFSGC 426
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 147/344 (42%), Gaps = 48/344 (13%)
Query: 120 NMENALLLMYAKCKEMDEALRLF---------DEMGSRRNIVSLNILINGYIDMELVDLA 170
N+ LL + KCK M E +L E I+S + L N +D +
Sbjct: 12 NINGTLLSLLDKCKSMLELKKLHAIGISYGLSHEYSFIFKILSFSALSNS----GDIDYS 67
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230
VF +I I W ++ G +K P +L +F KM+ GV PD ++ A + L
Sbjct: 68 YRVFSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLVKASARL 127
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
S + G VH I++ D F++ +LI MY+ CG++ A F K++V+W +M+
Sbjct: 128 SKQKSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSWNSML 187
Query: 291 EGLA-------------------------------NYGLGNEALRVFYQMERKGIKPNEA 319
+G A G EA+ VF +M G K NE
Sbjct: 188 DGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEV 247
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAE-EFI 377
T VSVL+AC H G + +G + + + + + P T+ LVD+ ++ G + +A F
Sbjct: 248 TMVSVLSACAHLGALQKGRMMHQYI--IDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFR 305
Query: 378 KIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
I ++ + A++ T+ + K+ M G +S E
Sbjct: 306 GISKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDE 349
>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1274
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 176/535 (32%), Positives = 265/535 (49%), Gaps = 74/535 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HAH L +D++V +LI Y R A F AR +F KMP RDV +WN +++ Y +
Sbjct: 119 GRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYAN 178
Query: 62 FSDSGEVLI-LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY--- 117
+ L G+ + TLV L A+ L G ++H Y + LE
Sbjct: 179 HGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEE 238
Query: 118 MLNMENALLLMYAKCKE-------------------------------MDEALRLFDEM- 145
+ + ALL MYAKCK+ M EA LF +M
Sbjct: 239 QVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDML 298
Query: 146 --------------------------------------GSRRNIVSLNILINGYIDMELV 167
G ++ + N L++ Y L+
Sbjct: 299 VEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLI 358
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227
+ A FDEI KD + + +++ GCV+ + EEA +FKKM + PD MVS++ AC
Sbjct: 359 NEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPAC 418
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
S L+ LQ+G+ H ++ + + + +LIDMY+KCG ++ + F K +DVV+W
Sbjct: 419 SHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWN 478
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
TMI G +GLG EA +F M+ +G P++ TF+ ++AAC HSGL+TEG F M
Sbjct: 479 TMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHK 538
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
Y + P +EH++C+VDLL+R GLL +A +FI+ MP + + ALL AC + DLGK+
Sbjct: 539 YGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQ 598
Query: 408 VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
V+ + KLG + +VLLSN ++ G + E AE R K +K PG S I++
Sbjct: 599 VSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEI 653
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 148/322 (45%), Gaps = 45/322 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG LHA + K+ + +D+ NSL+ Y + L +A + FD++ +D S+ L+S
Sbjct: 325 MGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCV 384
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E ++FK++ + D T+V L AC+ L L +GK H GL +
Sbjct: 385 QNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETS 444
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ MYAKC ++D + ++FD+M + R++VS N +I GY
Sbjct: 445 ICNSLIDMYAKCGKIDLSRQVFDKMPA-RDVVSWNTMIAGY------------------- 484
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR--- 237
+HG K EA LF M ++G PD+ + +++ACS + G+
Sbjct: 485 -------GIHGLGK-----EATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWF 532
Query: 238 --LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL- 293
+ H++ + + ++D+ ++ G L+EA K DV W ++
Sbjct: 533 DTMTHKYGILPRMEH----YICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACR 588
Query: 294 --ANYGLGNEALRVFYQMERKG 313
N LG + R+ ++ +G
Sbjct: 589 IHKNIDLGKQVSRIIQKLGPEG 610
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 162/374 (43%), Gaps = 42/374 (11%)
Query: 29 GRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLV 88
G++AL AR +FD++P D ++N L+ Y+ + L++ ++ + +K T
Sbjct: 48 GQLAL---ARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFP 104
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ AC+ L L G+T+H +A GL L + AL+ +Y +C A +F +M R
Sbjct: 105 FVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMR 164
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
D+V W +M+ G A+ M
Sbjct: 165 --------------------------------DVVAWNAMLAGYANHGMYHHAIAHLLDM 192
Query: 209 IDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD---AFVKTALIDMYSK 264
D G+ P+ +VS+L + L G +H + L+ + Q+ + TAL+DMY+K
Sbjct: 193 QDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAK 252
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV-S 323
C L A F+ ++ VTW+ +I G EA +F M +G+ AT V S
Sbjct: 253 CKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVAS 312
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
L C + G QL + + + L+ + ++AGL+ +A F + +
Sbjct: 313 ALRVCASLADLHMGTQLHALIAK-SGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVK 371
Query: 384 DKFISYKALLSACI 397
D ISY ALLS C+
Sbjct: 372 DT-ISYGALLSGCV 384
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 1/181 (0%)
Query: 161 YIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVM 220
+I + LAR+VFD I D + +++ A++L++ M+ V P++
Sbjct: 44 HISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTF 103
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC 280
VL ACS+L +L+ GR +H + D FV TALID+Y +C A F K
Sbjct: 104 PFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPM 163
Query: 281 KDVVTWTTMIEGLANYGLGNEALRVFYQME-RKGIKPNEATFVSVLAACRHSGLITEGCQ 339
+DVV W M+ G AN+G+ + A+ M+ G++PN +T VS+L G + +G
Sbjct: 164 RDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTS 223
Query: 340 L 340
+
Sbjct: 224 I 224
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 166/486 (34%), Positives = 260/486 (53%), Gaps = 40/486 (8%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFK 73
L DI+ N+L+ Y + + + FD+MPFRD S+NT ++ ++ S E L LFK
Sbjct: 85 LKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFK 144
Query: 74 QLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN--MENALLLMYAK 131
++ EG + T+V + +A A+L L YGK +H + + ++ N + NAL MYAK
Sbjct: 145 RMQREGFEPTEYTIVSILNASAQLSDLRYGKQIH--GSIIVRNFLGNVFIWNALTDMYAK 202
Query: 132 CKEMDEALRLFDEMGSRRNIVSLNILINGYI-------------DMEL------------ 166
C E+++A LFD + +++N+VS N++I+GY M L
Sbjct: 203 CGEIEQARWLFDCL-TKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMST 261
Query: 167 ----------VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
VD AR VF E +KDIV W +MM G K + E+AL LF +M+ E + PD
Sbjct: 262 IIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPD 321
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
+ SV+S+C+ L++L +G+ VH + + + V +ALIDMYSKCG +++A F
Sbjct: 322 SYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFN 381
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
++VV+W MI G A G +AL +F M ++ KP+ TF+ +L+AC H I +
Sbjct: 382 LMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQ 441
Query: 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
G + F + + + PT++H+ C+V+LL R G + QA IK M + F+ + LLS C
Sbjct: 442 GQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSIC 501
Query: 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPG 456
T + + A ++ +L Y++LSN YA G W +VA R MK +K G
Sbjct: 502 STKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAG 561
Query: 457 NSIIDL 462
S I++
Sbjct: 562 FSWIEI 567
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 1/221 (0%)
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N LL +YAK ++ +A LFD+M +R+I S N L++ Y + + FD + +
Sbjct: 60 LHNQLLHLYAKFGKLRDAQNLFDKM-LKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFR 118
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V + + + G P+E+LELFK+M EG P E +VS+L+A + LS+L+YG+ +H
Sbjct: 119 DSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIH 178
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I+ N + F+ AL DMY+KCG +E+A F K++V+W MI G A G
Sbjct: 179 GSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPE 238
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
+ + + +QM G P++ T +++AA G + E ++F
Sbjct: 239 KCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVF 279
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H L++++ V ++LI Y + DAR +F+ MP R+V SWN ++
Sbjct: 341 GQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQ 400
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L LF+ ++ + D +T + + SAC +HC + G EY ++
Sbjct: 401 NGHDKDALELFENMLQQKFKPDNVTFIGILSAC-----------LHCNWIEQGQEYFDSI 449
Query: 122 EN 123
N
Sbjct: 450 TN 451
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 110/286 (38%), Gaps = 65/286 (22%)
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQ----------------DAFVKTALIDMYSK 264
V +L + S+ ++ Y +LV + N I Q D+F+ L+ +Y+K
Sbjct: 11 VDLLCSRSTATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAK 70
Query: 265 CGSLEEAL-------------------------------VTFYKTDCKDVVTWTTMIEGL 293
G L +A TF + +D V++ T I G
Sbjct: 71 FGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGF 130
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR------MGGV 347
+ E+L +F +M+R+G +P E T VS+L A + G Q+ +G V
Sbjct: 131 SGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNV 190
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
+ + L D+ ++ G + QA + ++ +S+ ++S Y++ +K
Sbjct: 191 FI-------WNALTDMYAKCGEIEQARWLFDCLTKKN-LVSWNLMISG---YAKNGQPEK 239
Query: 408 VANNMMKLGNQSH-EAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
+ ++ H V +S A V EARR E + +
Sbjct: 240 CIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEK 285
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 242/460 (52%), Gaps = 32/460 (6%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + D + V +++ Y + AR +FD M R+ SWN ++ Y + D
Sbjct: 349 VHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGD 408
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ E L LFK+++ EG+ ++++ AC L L G+ VH ++GLE +N+ NA
Sbjct: 409 ATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNA 468
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
LI Y + DLA +VFDE+ K V
Sbjct: 469 --------------------------------LITMYCKCKRTDLAAQVFDELGYKTRVS 496
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ GC + E+A+ LF +M E V PD +VS++ A + +S+ R +H + +
Sbjct: 497 WNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSI 556
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ ++ QD +V TALIDMY+KCG + A F + V+TW MI G ++G G A+
Sbjct: 557 RLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVE 616
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+F +M+ G PNE TF+SVL+AC H+GL+ EG + F M Y ++P +EH+ +VDLL
Sbjct: 617 LFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLL 676
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
RAG L++A FI+ MP E Y A+L AC + +L ++ A + +L + +V
Sbjct: 677 GRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHV 736
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
LL+N YA W +VA R M++ +K PG SI+ LK+
Sbjct: 737 LLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKN 776
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 160/328 (48%), Gaps = 35/328 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ +HA + L + +L + Y + DAR +FD+MP RD +WN L++ Y
Sbjct: 244 GRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYAR 303
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N +++ +++ Q +G D +TLV + ACA + L + VH +A + G + +
Sbjct: 304 NGLAEAAVGMVVRMQE-EDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQV 362
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N+ A+L +Y KC +D A ++FD M RN VS N +I GY + +
Sbjct: 363 NVSTAILDVYCKCGAVDSARKVFDGM-QDRNSVSWNAMIKGYAE---------------N 406
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D EAL LFK+M+ EGV + +++ L AC L L GR V
Sbjct: 407 GDAT----------------EALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRV 450
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +++ + + V ALI MY KC + A F + K V+W MI G G
Sbjct: 451 HELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSS 510
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAA 327
+A+R+F +M+ + +KP+ T VS++ A
Sbjct: 511 EDAVRLFSRMQLENVKPDSFTLVSIIPA 538
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 111/253 (43%), Gaps = 33/253 (13%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T L CA L G+ VH GL AL MYAKC+ +A R+FD M
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
+R D V W +++ G + E A+ +
Sbjct: 287 PAR--------------------------------DRVAWNALVAGYARNGLAEAAVGMV 314
Query: 206 KKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
+M +E G PD +VSVL AC+ L R VH F ++ + V TA++D+Y K
Sbjct: 315 VRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCK 374
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
CG+++ A F ++ V+W MI+G A G EAL +F +M +G+ + + ++
Sbjct: 375 CGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAA 434
Query: 325 LAACRHSGLITEG 337
L AC G + EG
Sbjct: 435 LHACGELGFLDEG 447
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 143/330 (43%), Gaps = 42/330 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + + L+S++ V N+LI Y + A +FD++ ++ SWN ++
Sbjct: 447 GRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQ 506
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S + + LF ++ E + D TLV + A A + + +H Y+ ++ L+ + +
Sbjct: 507 NGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYV 566
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYAKC + A LF+ R++++ N +I+GY
Sbjct: 567 LTALIDMYAKCGRVSIARSLFNS-ARDRHVITWNAMIHGYGS------------------ 607
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
HG K A+ELF++M G P+E +SVLSACS + G+
Sbjct: 608 --------HGSGKV-----AVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFS 654
Query: 242 FILQNNITQDAFVK-TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA----NY 296
+ ++ + ++D+ + G L EA K + ++ + G N
Sbjct: 655 SMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNV 714
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLA 326
L E+ + +++E P E + +LA
Sbjct: 715 ELAEESAQRIFELE-----PEEGVYHVLLA 739
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 201 ALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
AL F M G P S+L C++ ++L GR VH + ++ +A TAL
Sbjct: 208 ALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALA 267
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM-ERKGIKPNE 318
+MY+KC +A F + +D V W ++ G A GL A+ + +M E G +P+
Sbjct: 268 NMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDA 327
Query: 319 ATFVSVLAAC 328
T VSVL AC
Sbjct: 328 VTLVSVLPAC 337
>gi|242053799|ref|XP_002456045.1| hypothetical protein SORBIDRAFT_03g029460 [Sorghum bicolor]
gi|241928020|gb|EES01165.1| hypothetical protein SORBIDRAFT_03g029460 [Sorghum bicolor]
Length = 615
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 169/507 (33%), Positives = 258/507 (50%), Gaps = 76/507 (14%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HA V K SD++V + L++ YG DAR +F +M RDV SW +++S +
Sbjct: 140 GDAVHAMVRKIGCASDLFVMSGLVNLYGTFRSAEDARKVFVEMHERDVVSWTSMISAFAQ 199
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L ++ +GI +K+T++ L SAC + + G+ V+ ++ G+E ++
Sbjct: 200 CGMWDDALRFLAEMQADGISPNKVTVISLLSACGHTQTVDKGRWVYGQLSEYGIEPDADI 259
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+ + MYAKC M +AL++F M R+ S NILI+G+
Sbjct: 260 GNSAISMYAKCGCMSDALQVFRTM-PVRSTKSWNILIDGF-------------------- 298
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V+ ++ +EAL +F++MI G+TPD + SVLSAC+ L +LQ R VH
Sbjct: 299 -----------VQNQRHKEALTVFQEMISTGLTPDAVTLASVLSACAQLGDLQQARDVHN 347
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM------------ 289
+I + I + +LI+ Y+KCG + A V F +DVV+WTTM
Sbjct: 348 YIKNHGIHCGTLLTNSLINTYAKCGDMVAANVAFQTMKQRDVVSWTTMVCGYVHGRQFTA 407
Query: 290 ------------------------------IEGLANYGLGNEALRVFYQMERKG-IKPNE 318
I G ++ G G EA+++F QM + G KP+
Sbjct: 408 AFEFFEEMKSAEVVASEMALHKQTITWNSMIGGFSSNGHGKEAVQLFNQMLKLGHPKPDG 467
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
TF +VL AC H G++ EG Q F M + + P IEH+ C+VDLLSRAGLL +A EFIK
Sbjct: 468 ITFKAVLGACAHVGMVNEGLQHFYSMSS-FTIAPDIEHYGCIVDLLSRAGLLEEAFEFIK 526
Query: 379 IMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438
MP E + + +LLSAC + E DL +++ ++ KL A+VL+SN +A G W +
Sbjct: 527 NMPIEPNPVIWGSLLSACRFHHEIDLARRIGQHITKLAPNDVGAHVLISNLHAEGGQWDD 586
Query: 439 VAEARRNMKELQTRKKPGNSIIDLKHY 465
V E R M K PG+S I ++ +
Sbjct: 587 VQEIREQMGSRGIEKSPGHSSIQVETF 613
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 115/215 (53%), Gaps = 4/215 (1%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
AR VFD I + +W M+ G P +AL F+ M+ GV+PD M + +SA ++
Sbjct: 71 ARMVFDGISQPNAAVWNCMIRGYTNHGAPSDALATFRAMLWRGVSPDSYTMAAAVSASAA 130
Query: 230 LSNLQY---GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
+N Q+ G VH + + D FV + L+++Y S E+A F + +DVV+W
Sbjct: 131 FANWQWRATGDAVHAMVRKIGCASDLFVMSGLVNLYGTFRSAEDARKVFVEMHERDVVSW 190
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
T+MI A G+ ++ALR +M+ GI PN+ T +S+L+AC H+ + +G ++ ++
Sbjct: 191 TSMISAFAQCGMWDDALRFLAEMQADGISPNKVTVISLLSACGHTQTVDKGRWVYGQL-S 249
Query: 347 VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
Y ++P + + + ++ G + A + + MP
Sbjct: 250 EYGIEPDADIGNSAISMYAKCGCMSDALQVFRTMP 284
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 235/414 (56%), Gaps = 4/414 (0%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL--EKLHYGKTVHCY 109
W + ++ Y E F ++ G+ + IT + L SACA E + ++H Y
Sbjct: 60 WTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGY 119
Query: 110 ATKVGLEY-MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168
A K GL+ + + AL+ MY+KC ++ A ++F +G + N VS N ++NG++ ++
Sbjct: 120 ACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVK-NSVSWNTMLNGFMRNGEIE 178
Query: 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS 228
LA ++FDE+ +D + W ++++G +K E+ALE F +M GV D +++VL+AC+
Sbjct: 179 LAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACA 238
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
L L G VHRF++ + + +LIDMYS+CG +E A F K + +V+W +
Sbjct: 239 DLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNS 298
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
+I G A G +E+L FY M+++G KP+ ++ L AC H+GL+ +G +LF M V+
Sbjct: 299 IIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVH 358
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
++ P IEH+ C+VDL RAG L A I+ MP + + +LL+AC T+ + +L +++
Sbjct: 359 KITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERL 418
Query: 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ KL + YVLLSN YA G W RR MK +KKPG S +++
Sbjct: 419 MKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEI 472
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 40/248 (16%)
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ--YGRLV 239
IVLW S + + Q EA F +M GV P+ +++LSAC+ + + +
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116
Query: 240 HRFILQNNI-TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK----------------- 281
H + + + T V TALIDMYSKC L A FY K
Sbjct: 117 HGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGE 176
Query: 282 --------------DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
D ++WT +I GL +G +AL F+QM+R G+ + + ++VLAA
Sbjct: 177 IELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAA 236
Query: 328 CRHSGLITEGCQLFR-RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE-FIKIMPAEDK 385
C G +T G + R M ++ I + L+D+ SR G + A + F+K+ A+
Sbjct: 237 CADLGALTLGLWVHRFVMPQEFKDNIKISN--SLIDMYSRCGCIEFARQVFVKM--AKRT 292
Query: 386 FISYKALL 393
+S+ +++
Sbjct: 293 LVSWNSII 300
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/415 (23%), Positives = 162/415 (39%), Gaps = 109/415 (26%)
Query: 5 LHAHVTKTALDSD-IYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFS 63
LH + K LD+ + VG +LI Y + A AR +F + ++ SWNT++ N F
Sbjct: 116 LHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTML---NGFM 172
Query: 64 DSGEV----------------------------------LILFKQLIFEGIVADKITLVI 89
+GE+ L F Q+ G+ AD ++++
Sbjct: 173 RNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIA 232
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +ACA L L G VH + + + + N+L+ MY++C ++ A ++F +M ++R
Sbjct: 233 VLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKM-AKR 291
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+VS N +I G+ D E+LE F M
Sbjct: 292 TLVSWNSIIVGFAVNGFAD-------------------------------ESLEFFYAMQ 320
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
EG PD L+ACS + G L + IT ++D+Y + G L
Sbjct: 321 KEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRL 380
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E+AL MIE + +KPNE S+LAAC
Sbjct: 381 EDAL---------------NMIEEMP-------------------MKPNEVVLGSLLAAC 406
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIE-HFVCLVDLLSRAGLLYQAEEFIKIMPA 382
R G + +L + + +++ P + ++V L ++ + G A + M A
Sbjct: 407 RTHGDVNLAERLMKHL---FKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKA 458
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 17/190 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G +H V +I + NSLI Y R AR +F KM R + SWN+++ +
Sbjct: 245 LGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFA 304
Query: 60 -NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-------KTVHCYAT 111
N F+D E L F + EG D ++ +AC+ ++ G K+VH
Sbjct: 305 VNGFAD--ESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITP 362
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
++ ++ +Y + +++AL + +EM + N V L L+ V+LA
Sbjct: 363 RI------EHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAE 416
Query: 172 EVFDEIVDKD 181
+ + D
Sbjct: 417 RLMKHLFKLD 426
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 151/467 (32%), Positives = 266/467 (56%), Gaps = 8/467 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIH-------FYGRMALFTDARVLFDKMPFRDVGSWNTL 55
K +H + +T L SD++V + L+ F L A +F ++ ++ +N L
Sbjct: 29 KIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLL 88
Query: 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
+ ++ ++ + + Q++ I D IT L A + +E + G+ H + G
Sbjct: 89 IRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGF 148
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ + +EN+L+ MYA C + A R+F +MG R ++VS ++ GY +V+ ARE+FD
Sbjct: 149 QNDVYVENSLVHMYANCGFIAAAGRIFGQMGFR-DVVSWTSMVAGYCKCGMVENAREMFD 207
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
E+ +++ W M++G K E+A++LF+ M EGV +E VMVSV+S+C+ L L++
Sbjct: 208 EMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEF 267
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G + +++++++T + + TAL+DM+ +CG +E+A+ F D ++W+++I+GLA
Sbjct: 268 GERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAV 327
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
+G ++A+ F QM G P + TF +VL+AC H GL+ +G +++ M + ++P +E
Sbjct: 328 HGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLE 387
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
H+ C+VD+L RAG L +AE FI M + ALL AC Y ++ ++V N ++K+
Sbjct: 388 HYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKV 447
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ YVLLSN YA G W ++ R MKE +K PG S+I++
Sbjct: 448 KPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEI 494
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 137/309 (44%), Gaps = 76/309 (24%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFY---------GRM-------------------- 31
+G+ H+ + + +D+YV NSL+H Y GR+
Sbjct: 135 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYC 194
Query: 32 --ALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
+ +AR +FD+MP R++ +W+ +++ Y + + + LF+ + EG+VA++ +V
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ S+CA L L +G+ + Y K + L + AL+ M+ +C ++++A+
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAI---------- 304
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
VF+ + + D + W S++ G +A+ F +MI
Sbjct: 305 ----------------------HVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMI 342
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI-LQNNITQDAFVKTAL------IDMY 262
G P + +VLSACS +G LV + + + N+ +D ++ L +DM
Sbjct: 343 SLGFIPRDVTFTAVLSACS------HGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDML 396
Query: 263 SKCGSLEEA 271
+ G L EA
Sbjct: 397 GRAGKLAEA 405
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 147/462 (31%), Positives = 236/462 (51%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA K D +V N+L Y + LF+KM RDV SW T+++
Sbjct: 236 GREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQ 295
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ F ++ + ++ T + S CA L ++ +G+ +H +GL L++
Sbjct: 296 MGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSV 355
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
EN+++ MYAKC ++ + +F EM R D
Sbjct: 356 ENSIMTMYAKCGQLTSSSVIFHEMTRR--------------------------------D 383
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W +++ G + EA EL M EG P E + SVLSAC +++ L++G+ +H
Sbjct: 384 IVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHA 443
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++L + A V +ALI+MY KCGS+EEA F + D+V+WT MI G A +G E
Sbjct: 444 YVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSRE 503
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
+ +F ++ R G++P+ TF+ VL+AC H+GL+ G F M Y++ P+ EH+ C++
Sbjct: 504 VIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMI 563
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L AE I+ MP + + LL AC + + + G++ A +++L
Sbjct: 564 DLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAG 623
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++ L+N YA +G W E A+ R+ MK K+PG S I +K
Sbjct: 624 THITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVK 665
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/413 (26%), Positives = 199/413 (48%), Gaps = 49/413 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH + KT L + ++VG++L+ Y + + R +F +MP R+V SW +++
Sbjct: 135 GELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVR 194
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L+ F ++ + D T I ACA L+YG+ +H A K G + +
Sbjct: 195 AGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFV 254
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L MY KC +++ L LF++M R D
Sbjct: 255 ANTLATMYNKCGKLEYGLTLFEKMSMR--------------------------------D 282
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ V+ Q E A++ F +M + V+P+E +V+S C++L+ +++G +H
Sbjct: 283 VVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHA 342
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
IL + V+ +++ MY+KCG L + V F++ +D+V+W+T+I G G +E
Sbjct: 343 LILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSE 402
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH----F 357
A + M +G KP E SVL+AC + ++ G QL Y + +EH
Sbjct: 403 AFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLH-----AYVLSIGLEHTAMVL 457
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKV 408
L+++ + G + EE +I A D +S+ A+++ Y+E ++V
Sbjct: 458 SALINMYCKCGSI---EEASRIFDAAENDDIVSWTAMING---YAEHGYSREV 504
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 148/306 (48%), Gaps = 33/306 (10%)
Query: 36 DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-GIVADKITLVILFSAC 94
+AR +FDKM +D SW TL+S Y + +DS E L+LFK + E G+ D L + AC
Sbjct: 67 NARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKAC 126
Query: 95 ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSL 154
++YG+ +H YA K GL + + +ALL MY K ++ E R+F EM RN+VS
Sbjct: 127 GLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEM-PMRNVVS- 184
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
W +++ G V+A +EAL F +M V
Sbjct: 185 ------------------------------WTAIITGLVRAGYNKEALVYFSEMWRSRVE 214
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
D L AC+ L YGR +H ++ +FV L MY+KCG LE L
Sbjct: 215 YDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTL 274
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F K +DVV+WTT+I L G A++ F +M + PNE TF +V++ C + I
Sbjct: 275 FEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARI 334
Query: 335 TEGCQL 340
G QL
Sbjct: 335 EWGEQL 340
>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 769
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 157/462 (33%), Positives = 238/462 (51%), Gaps = 31/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H K L + G SL Y R AR +F+++ D SWN +++ +
Sbjct: 286 GSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAGLAN 345
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + +F ++ G + D I+L L A + L G +H + K G L++
Sbjct: 346 NGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIHSFIIKCGFLADLSV 405
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+LL MY C ++ LF++ ++ + VS
Sbjct: 406 CNSLLTMYTFCSDLYCCFNLFEDFRNKADSVS---------------------------- 437
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
W +++ C++ +QP E L LFK M+ PD M ++L C +S+L+ G VH
Sbjct: 438 ---WNAILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHC 494
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + + F+K LIDMY+KCGSL +A F D DVV+W+T+I G A G G E
Sbjct: 495 YSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEE 554
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F +M+ GI+PN TFV VL AC H GL+ EG +L+ M + + PT EH C+V
Sbjct: 555 ALILFREMKSSGIEPNHVTFVGVLTACSHVGLVEEGLKLYAIMQTEHGISPTKEHCSCVV 614
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL+RAG L +AE FI M E + +K LLSAC T DL +K A N++K+ +
Sbjct: 615 DLLARAGHLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVDLAQKAAENILKIDPFNST 674
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A+VLL + +A G+W + A R +MK+ +K PG S ID++
Sbjct: 675 AHVLLCSMHASSGNWEDAALLRSSMKKHDVKKIPGQSWIDVE 716
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 104/403 (25%), Positives = 184/403 (45%), Gaps = 38/403 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H H+ + D + N ++ YG+ DAR +FD MP R++ S+ ++++ Y+
Sbjct: 83 GRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQ 142
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + L+ +++ +V D+ + ACA + GK +H K+ L
Sbjct: 143 NGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIA 202
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+NAL+ MY + +M +A +VF I KD
Sbjct: 203 QNALIAMYVRFNQMSDA--------------------------------SKVFYGIPAKD 230
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ W S++ G + EAL K+M+ GV P+E + S L ACSSL YG +H
Sbjct: 231 LISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIH 290
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ +T +A +L DMY++CG L+ A F + + D +W +I GLAN G +
Sbjct: 291 GLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAGLANNGYAD 350
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC- 359
EA+ VF +M G P+ + S+L A + +G Q+ + + + VC
Sbjct: 351 EAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIH---SFIIKCGFLADLSVCN 407
Query: 360 -LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
L+ + + LY + + +S+ A+L+AC+ + +
Sbjct: 408 SLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQ 450
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 99/412 (24%), Positives = 175/412 (42%), Gaps = 43/412 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LHA V K S + N+LI Y R +DA +F +P +D+ SW+++++ ++
Sbjct: 183 LGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFS 242
Query: 61 DFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L K+++ G+ ++ AC+ L + YG +H K+ L
Sbjct: 243 QLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTGNA 302
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+L MYA+C +D A R+F+++ R + S N++I G + D
Sbjct: 303 IAGCSLCDMYARCGFLDSARRVFNQI-ERPDTASWNVIIAGLANNGYAD----------- 350
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
EA+ +F +M + G PD + S+L A + L G +
Sbjct: 351 --------------------EAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQI 390
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGL 298
H FI++ D V +L+ MY+ C L F K D V+W ++ +
Sbjct: 391 HSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQ 450
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
E LR+F M +P+ T ++L C + G Q+ ++ +E F+
Sbjct: 451 PVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCY---SWKTGLVLEQFI 507
Query: 359 --CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
L+D+ ++ G L QA M D +S+ L+ + Y++ G++
Sbjct: 508 KNGLIDMYAKCGSLRQARRIFDSMDNGD-VVSWSTLI---VGYAQSGFGEEA 555
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 33/244 (13%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T + L AC+ L G+ +H + +Y + N +L MY KC
Sbjct: 66 TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKC------------- 112
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
GS R+ AREVFD + ++++V + S++ G + Q EA+ L+
Sbjct: 113 GSLRD-------------------AREVFDFMPERNLVSYTSVITGYSQNGQEAEAITLY 153
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
KM+ + PD+ S++ AC+ ++ G+ +H +++ + + ALI MY +
Sbjct: 154 LKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRF 213
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNEATFVSV 324
+ +A FY KD+++W+++I G + G EAL +M G+ PNE F S
Sbjct: 214 NQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSS 273
Query: 325 LAAC 328
L AC
Sbjct: 274 LKAC 277
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC 280
+S++ ACSS +L GR +H IL +N D + ++ MY KCGSL +A F
Sbjct: 68 ISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPE 127
Query: 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
+++V++T++I G + G EA+ ++ +M + + P++ F S++ AC +G + G QL
Sbjct: 128 RNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQL 187
Query: 341 FRRMGGVYRVQPTIEHFV---CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ V +++ + H + L+ + R + A + +PA+D IS+ ++++
Sbjct: 188 HAQ---VIKLESS-SHLIAQNALIAMYVRFNQMSDASKVFYGIPAKD-LISWSSIIAG 240
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 1/182 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + KT L + ++ N LI Y + AR +FD M DV SW+TL+ Y
Sbjct: 488 LGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYA 547
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
E LILF+++ GI + +T V + +AC+ + + G K T+ G+
Sbjct: 548 QSGFGEEALILFREMKSSGIEPNHVTFVGVLTACSHVGLVEEGLKLYAIMQTEHGISPTK 607
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ ++ + A+ ++EA R DEM ++V L++ VDLA++ + I+
Sbjct: 608 EHCSCVVDLLARAGHLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVDLAQKAAENILK 667
Query: 180 KD 181
D
Sbjct: 668 ID 669
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 153/464 (32%), Positives = 249/464 (53%), Gaps = 34/464 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNS--LIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
MGK +HA+V + + + + V + L+ Y + AR LF+ + + V SW +++
Sbjct: 213 MGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG 272
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ E LF ++ E I ++IT++ L C L GK +H Y + G
Sbjct: 273 CIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVS 332
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L + AL+ MY KC ++ RN AR +FD
Sbjct: 333 LALATALVDMYGKCSDI-------------RN-------------------ARALFDSTQ 360
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++D+++W +M+ +A ++A LF +M GV P + +VS+LS C+ L G+
Sbjct: 361 NRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKW 420
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH +I + + D + TAL+DMY+KCG + A F + +D+ W +I G A +G
Sbjct: 421 VHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGY 480
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G EAL +F +MER+G+KPN+ TF+ +L AC H+GL+TEG +LF +M + + P IEH+
Sbjct: 481 GEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYG 540
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDLL RAGLL +A E IK MP + I + AL++AC + LG+ A ++++ +
Sbjct: 541 CMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPE 600
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ VL+SN YA W++ A R+ MK + +K+PG+S+I++
Sbjct: 601 NCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEV 644
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 172/339 (50%), Gaps = 34/339 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V K LD D++VGN+L+ YG A AR++FDKM RDV SW+T++ +
Sbjct: 112 LGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLS 171
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYM- 118
+ L L +++ F + ++ +V + + A + GK +H Y + E+M
Sbjct: 172 RNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMG 231
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ ALL MYAKC + LAR++F+ +
Sbjct: 232 VPTTTALLDMYAKCGHLG--------------------------------LARQLFNGLT 259
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K +V W +M+ GC+++ + EE +LF +M +E + P+E M+S++ C LQ G+
Sbjct: 260 QKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQ 319
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H +IL+N + + TAL+DMY KC + A F T +DV+ WT M+ A
Sbjct: 320 LHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANC 379
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
++A +F QM G++P + T VS+L+ C +G + G
Sbjct: 380 IDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG 418
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 128/253 (50%), Gaps = 34/253 (13%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ AC ++ GK +H + K GL+ + + NAL+LMY +C
Sbjct: 100 VLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECA---------------- 143
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
V+ AR VFD+++++D+V W +M+ + K+ + ALEL ++M
Sbjct: 144 ----------------CVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMN 187
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT--ALIDMYSKCGS 267
V P E MVS+++ + +N++ G+ +H ++++N+ + V T AL+DMY+KCG
Sbjct: 188 FMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGH 247
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
L A F K VV+WT MI G E ++F +M+ + I PNE T +S++
Sbjct: 248 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVE 307
Query: 328 CRHSGLITEGCQL 340
C +G + G QL
Sbjct: 308 CGFTGALQLGKQL 320
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 8/191 (4%)
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK 281
SVL AC +S Q G+ +H F+L+ + +D FV AL+ MY +C +E A + F K +
Sbjct: 99 SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG---- 337
DVV+W+TMI L+ + AL + +M ++P+E VS++ + + G
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 218
Query: 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
+ R + PT L+D+ ++ G L A + + + +S+ A+++ CI
Sbjct: 219 AYVIRNSNNEHMGVPTT---TALLDMYAKCGHLGLARQLFNGL-TQKTVVSWTAMIAGCI 274
Query: 398 TYSEFDLGKKV 408
+ + G K+
Sbjct: 275 RSNRLEEGTKL 285
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 255/463 (55%), Gaps = 2/463 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ ++A + + ++ + + ++L+ Y + A+ LFD+ ++ N + S Y
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L +F ++ G+ D+I+++ S+C++L + +GK+ H Y + G E N+
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI 374
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC D A R+FD M S + +V+ N ++ GY++ VD A E F+ + +K+
Sbjct: 375 CNALIDMYMKCHRQDTAFRIFDRM-SNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKN 433
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
IV W +++ G V+ EEA+E+F M EGV D M+S+ SAC L L + ++
Sbjct: 434 IVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIY 493
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I +N I D + T L+DM+S+CG E A+ F +DV WT I +A G
Sbjct: 494 YYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAE 553
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ +F M +G+KP+ FV L AC H GL+ +G ++F M ++ V P H+ C+
Sbjct: 554 RAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCM 613
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A + I+ MP E + + +LL+AC ++ A + L +
Sbjct: 614 VDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERT 673
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+YVLLSN YA G W ++A+ R +MKE RK PG S I ++
Sbjct: 674 GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIR 716
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/414 (29%), Positives = 186/414 (44%), Gaps = 92/414 (22%)
Query: 2 GKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
G G+ H + K D++V NSL+HFY AR +FD+M R+V SW +++ Y
Sbjct: 151 GNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGY 210
Query: 60 --NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
DF+ V + F+ + E + + +T+V + SACA+LE L G+ V+ + G+E
Sbjct: 211 ARRDFAKDA-VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEV 269
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
M +AL+ MY KC +D A RLFDE G+ N+ N + + Y+ L
Sbjct: 270 NDLMVSALVDMYMKCNAIDVAKRLFDEYGA-SNLDLCNAMASNYVRQGLT---------- 318
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
EAL +F M+D GV PD M+S +S+CS L N+ +G+
Sbjct: 319 ---------------------REALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGK 357
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKC-------------------------------G 266
H ++L+N + ALIDMY KC G
Sbjct: 358 SCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENG 417
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME-RKGIKPNEATFVSVL 325
++ A TF K++V+W T+I GL L EA+ VF M+ ++G+ + T +S+
Sbjct: 418 EVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIA 477
Query: 326 AACRHSGLI-----------TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
+AC H G + G QL R+G LVD+ SR G
Sbjct: 478 SACGHLGALDLAKWIYYYIEKNGIQLDVRLG------------TTLVDMFSRCG 519
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 160/335 (47%), Gaps = 41/335 (12%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM---SIY 59
K H +TK LD+D+ L+ L T + F K F + S+ T S+
Sbjct: 49 KMFHRSLTKQGLDNDVSTITKLVAR--SCELGTRESLSFAKEVFENSESYGTCFMYNSLI 106
Query: 60 NDFSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
++ SG E ++LF +++ GI DK T SACA+ G +H K+G
Sbjct: 107 RGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYA 166
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
L ++N+L+ YA+C E+D A ++FDEM S RN+VS
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEM-SERNVVS----------------------- 202
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI-DEGVTPDEEVMVSVLSACSSLSNLQY 235
W SM+ G + ++A++LF +M+ DE VTP+ MV V+SAC+ L +L+
Sbjct: 203 --------WTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G V+ FI + I + + +AL+DMY KC +++ A F + ++ M
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
GL EAL VF M G++P+ + +S +++C
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 110/206 (53%), Gaps = 10/206 (4%)
Query: 132 CKEMDEALRLF----DEMGSRRNIVSLNILINGYIDM---ELVDLAREVFDEIVD-KDIV 183
CK +DE L++F + G ++ ++ L+ ++ E + A+EVF+
Sbjct: 42 CKTIDE-LKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCF 100
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
++ S++ G + EA+ LF +M++ G++PD+ LSAC+ G +H I
Sbjct: 101 MYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++ +D FV+ +L+ Y++CG L+ A F + ++VV+WT+MI G A +A+
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220
Query: 304 RVFYQMER-KGIKPNEATFVSVLAAC 328
+F++M R + + PN T V V++AC
Sbjct: 221 DLFFRMVRDEEVTPNSVTMVCVISAC 246
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 72/159 (45%), Gaps = 1/159 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K ++ ++ K + D+ +G +L+ + R A +F+ + RDV +W +
Sbjct: 488 LAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMA 547
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
++ + LF +I +G+ D + V +AC+ + GK + K+ G+
Sbjct: 548 MAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPED 607
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
++ + + ++EA++L ++M N V N L+
Sbjct: 608 VHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLL 646
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 147/462 (31%), Positives = 237/462 (51%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA K D +V N+L Y + LF+KM RDV SW T+++
Sbjct: 236 GREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQ 295
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ F ++ + ++ T + S CA L ++ +G+ +H +GL L++
Sbjct: 296 MGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSV 355
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
EN+++ MYAKC ++ + +F EM R D
Sbjct: 356 ENSIMTMYAKCGQLTSSSVIFHEMTRR--------------------------------D 383
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W +++ G + EA EL M EG P E + SVLSAC +++ L++G+ +H
Sbjct: 384 IVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHA 443
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++L + A V +ALI+MY KCGS+EEA F + D+V+WT MI G A +G E
Sbjct: 444 YVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSRE 503
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
+ +F ++ R G++P+ TF+ VL+AC H+GL+ G + F M Y++ P+ EH+ C++
Sbjct: 504 VIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMI 563
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L AE I+ MP + + LL AC + + + G++ A +++L
Sbjct: 564 DLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAG 623
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++ L+N YA +G W E A+ R+ MK K+PG S I +K
Sbjct: 624 THITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVK 665
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 111/413 (26%), Positives = 200/413 (48%), Gaps = 49/413 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH + KT L + ++VG++L+ Y + + R +F +MP R+V SW +++
Sbjct: 135 GELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVR 194
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L+ F ++ + D T I ACA L+YG+ +H A K G + +
Sbjct: 195 AGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFV 254
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L MY KC +++ L LF++M R D
Sbjct: 255 ANTLATMYNKCGKLEYGLTLFEKMSMR--------------------------------D 282
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ V+ Q E A++ F +M + V+P+E +V+S C++L+ +++G +H
Sbjct: 283 VVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHA 342
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
IL + V+ +++ MY+KCG L + V F++ +D+V+W+T+I G + G +E
Sbjct: 343 LILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSE 402
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH----F 357
A + M +G KP E SVL+AC + ++ G QL Y + +EH
Sbjct: 403 AFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLH-----AYVLSIGLEHTAMVL 457
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKV 408
L+++ + G + EE +I A D +S+ A+++ Y+E ++V
Sbjct: 458 SALINMYCKCGSI---EEASRIFDAAENDDIVSWTAMING---YAEHGYSREV 504
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 148/306 (48%), Gaps = 33/306 (10%)
Query: 36 DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-GIVADKITLVILFSAC 94
+AR +FDKM +D SW TL+S Y + +DS E L+LFK + E G+ D L + AC
Sbjct: 67 NARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKAC 126
Query: 95 ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSL 154
++YG+ +H YA K GL + + +ALL MY K ++ E R+F EM RN+VS
Sbjct: 127 GLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEM-PMRNVVS- 184
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
W +++ G V+A +EAL F +M V
Sbjct: 185 ------------------------------WTAIITGLVRAGYNKEALVYFSEMWRSRVE 214
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
D L AC+ L YGR +H ++ +FV L MY+KCG LE L
Sbjct: 215 YDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTL 274
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F K +DVV+WTT+I L G A++ F +M + PNE TF +V++ C + I
Sbjct: 275 FEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARI 334
Query: 335 TEGCQL 340
G QL
Sbjct: 335 EWGEQL 340
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 242/464 (52%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + K + +D +V +LI Y + +A L D+ SWN +M Y
Sbjct: 1016 LGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYI 1075
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ S + L F + GI D+ITL A L L GK + YA K+G L
Sbjct: 1076 KSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLW 1135
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ + +L MY KC +M AL LF E+ SR + V+ +I+GYI E DE
Sbjct: 1136 VSSGVLDMYIKCGDMPNALELFGEI-SRPDEVAWTTMISGYI---------ENGDE---- 1181
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ AL ++ M GV PDE +++ A S L+ L+ G+ +H
Sbjct: 1182 ------------------DHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIH 1223
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + + D FV T+L+DMY KCGS+++A F K D + VV W M+ GLA +G +
Sbjct: 1224 ANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVD 1283
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F M+ GI+P++ TF+ VL+AC HSGL +E + F M Y + P IEH+ CL
Sbjct: 1284 EALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCL 1343
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD L RAG + +AE I MP + Y+ALL AC T + + K+VA+ ++ L
Sbjct: 1344 VDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDS 1403
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
AYVLLSN YA W +V +AR MK +K PG S ID+K+
Sbjct: 1404 SAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKN 1447
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/423 (27%), Positives = 197/423 (46%), Gaps = 41/423 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +HA V K++ + V NSL++ Y + + A F P D+ SWNT++S Y
Sbjct: 912 LGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYA 971
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHY---GKTVHCYATKVGLEY 117
+ E + F+ L+ +G+ D+ TL + AC+ ++ Y G VH YA K G+
Sbjct: 972 QNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIN 1031
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ AL+ +Y+K +MDEA L++G D
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEA----------------EFLLHGKYDF------------- 1062
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
D+ W ++M G +K+ + +ALE F M + G+ DE + + + A L NL+ G+
Sbjct: 1063 ---DLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGK 1119
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+ + ++ D +V + ++DMY KCG + AL F + D V WTTMI G G
Sbjct: 1120 QIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENG 1179
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+ AL V++ M G++P+E TF +++ A + +G Q+ V ++ +++HF
Sbjct: 1180 DEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIH---ANVVKLDYSLDHF 1236
Query: 358 V--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
V LVD+ + G + A + M K + + A+L + D + M
Sbjct: 1237 VGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQHGHVDEALNLFRTMQSN 1295
Query: 416 GNQ 418
G Q
Sbjct: 1296 GIQ 1298
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 119/431 (27%), Positives = 188/431 (43%), Gaps = 63/431 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK HA + + D Y+ N+LI Y + AR +FDK RD+ +WN++++ Y
Sbjct: 629 LGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYA 688
Query: 61 DFSDSG-----EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
F+DS E LF L G ++TL L C + +TVH YA K+G
Sbjct: 689 QFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF 748
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
E L + AL+ +Y K + +A LFD+M R+ V N+++ Y++ D A F
Sbjct: 749 ELDLFVSGALVNIYCKYGLVGQARLLFDKM-PERDAVLWNVMLKAYVENSFQDEALRFFS 807
Query: 176 EI------------------VDKD---------------------------IVLWRSMMH 190
V+ D I W +
Sbjct: 808 AFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLT 867
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
+ A Q A++ FK ++ + D +V +LSA +L G +H +++++
Sbjct: 868 EFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAP 927
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
V +L++MYSK G + A TF + D+++W TMI A L EA+ F +
Sbjct: 928 VVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLL 987
Query: 311 RKGIKPNEATFVSVLAACR---HSGLITEGCQLFRRMGGVYRVQPTI--EHFV--CLVDL 363
R G+KP++ T SVL AC T G Q+ VY ++ I + FV L+DL
Sbjct: 988 RDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVH-----VYAIKCGIINDSFVSTALIDL 1042
Query: 364 LSRAGLLYQAE 374
S+ G + +AE
Sbjct: 1043 YSKGGKMDEAE 1053
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
++++L+ G+ H I+ + D ++ LI MYSKCGSL A F K+ +D+VTW +
Sbjct: 623 AMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNS 682
Query: 289 MIEGLANYGLGN-----EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
++ A + + E R+F + G T +L C SG + Q+
Sbjct: 683 ILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV----QVSET 738
Query: 344 MGG-VYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYS 400
+ G ++ ++ FV LV++ + GL+ QA MP D + + +L A + S
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVL-WNVMLKAYVENS 797
>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
Length = 888
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 251/447 (56%), Gaps = 2/447 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ +L+ Y + AR + D+MP R+ SW TL++ + ++ E + L+ Q++
Sbjct: 311 DVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQML 370
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+G + + ACA L+ L G+ +H K+ + + +AL+ MY KCK++
Sbjct: 371 ADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLP 430
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+A +F + ++NIV N LI+GY + + A E+F ++ +++ W S++ G + +
Sbjct: 431 DAQMIFYSL-PQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNR 489
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
Q +AL+ F M+ G +P E SVL AC+SL +L+ G++VH I++ I + FV T
Sbjct: 490 QFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGT 549
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
AL DMY+K G L+ + FY+ ++ V WT MI+GLA G E++ +F M GI P
Sbjct: 550 ALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITP 609
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
NE TF+++L AC HSGL+ F M + P +H+ C+VD+L+RAG L +AE+
Sbjct: 610 NEQTFLAILFACSHSGLVEHAMHYFEMMQAC-GISPKAKHYTCMVDVLARAGHLAEAEDL 668
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436
+ + ++ + S+ ALLSAC Y ++G++ A + +L + YVLLSN YA G W
Sbjct: 669 LLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKW 728
Query: 437 TEVAEARRNMKELQTRKKPGNSIIDLK 463
+ AE R MK + +K G S + ++
Sbjct: 729 KDAAEMRILMKGINLKKDGGCSWVQIR 755
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 116/454 (25%), Positives = 207/454 (45%), Gaps = 78/454 (17%)
Query: 34 FTDARVLFDKMPFRDVGSWNTLMS---------------------------------IYN 60
AR LFD MP R V S+ T++ + N
Sbjct: 164 IVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLN 223
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL-EYML 119
+ + L +F +++ G+ ++ITLV + AC + ++ A K L + L
Sbjct: 224 ELPK--DALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNL 281
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ N+L+ +Y + + D A R+FDEM R++VS L++ Y ++ ++ AR V DE+ +
Sbjct: 282 GVRNSLITLYLRKGDADAARRMFDEM-EVRDVVSWTALLDVYAELGDLEGARRVLDEMPE 340
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
++ V W +++ + +EA+ L+ +M+ +G P+ SVL AC+SL +L+ GR +
Sbjct: 341 RNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKI 400
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H L+ + + FV +ALIDMY KC L +A + FY K++V W ++I G +N
Sbjct: 401 HNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKM 460
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA +F +M + N A++ S+++ + + + F M
Sbjct: 461 VEAEELFKKMPAR----NVASWNSIISGYAQNRQFIDALKSFHAM--------------- 501
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG-NQ 418
L + P E I++ ++L AC + ++GK V ++KLG +
Sbjct: 502 ----------LASGQS-----PGE---ITFSSVLLACASLCSLEMGKMVHAKIIKLGIKE 543
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
S LS+ YA G ++ ++R E+ R
Sbjct: 544 SIFVGTALSDMYAKSG---DLDSSKRVFYEMPKR 574
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 152/356 (42%), Gaps = 71/356 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K A ++++V ++LI Y + DA+++F +P +++ WN+L+S Y++
Sbjct: 397 GRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSN 456
Query: 62 FSDSGEVLILFKQ-------------------------------LIFEGIVADKITLVIL 90
S E LFK+ ++ G +IT +
Sbjct: 457 NSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSV 516
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
ACA L L GK VH K+G++ + + AL MYAK ++D + R+F EM R +
Sbjct: 517 LLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRND 576
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+ W +M+ G + EE++ LF+ MI
Sbjct: 577 VA--------------------------------WTAMIQGLAENGFAEESILLFEDMIS 604
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+TP+E+ +++L ACS +++ + I+ A T ++D+ ++ G L E
Sbjct: 605 AGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAE 664
Query: 271 ALVTFYKTDCK-DVVTWTTMIEGL---ANYGLGNEALRVFYQMERKGIKPNEATFV 322
A K + K + +W ++ N +G A + +++ K N A +V
Sbjct: 665 AEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELD----KDNTAGYV 716
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MGK +HA + K + I+VG +L Y + ++ +F +MP R+ +W ++
Sbjct: 528 MGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLA 587
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLE 116
+ + E ++LF+ +I GI ++ T + + AC+ +HY + + +
Sbjct: 588 ENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAK 647
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI---NGYIDMELVDLAREV 173
+ M + L A+ + EA L ++ S+ S L+ N Y + E+ + A +
Sbjct: 648 HYTCMVDVL----ARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKR 703
Query: 174 FDEIVDKD----IVLWRSMMHGCVKAKQPEEALELFK 206
E+ DKD VL +M C K K E L K
Sbjct: 704 LQEL-DKDNTAGYVLLSNMYASCGKWKDAAEMRILMK 739
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 242/464 (52%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + K + +D +V +LI Y + +A L D+ SWN +M Y
Sbjct: 1016 LGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYI 1075
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ S + L F + GI D+ITL A L L GK + YA K+G L
Sbjct: 1076 KSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLW 1135
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ + +L MY KC +M AL LF E+ SR + V+ +I+GYI E DE
Sbjct: 1136 VSSGVLDMYIKCGDMPNALELFGEI-SRPDEVAWTTMISGYI---------ENGDE---- 1181
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ AL ++ M GV PDE +++ A S L+ L+ G+ +H
Sbjct: 1182 ------------------DHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIH 1223
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + + D FV T+L+DMY KCGS+++A F K D + VV W M+ GLA +G +
Sbjct: 1224 ANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVD 1283
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F M+ GI+P++ TF+ VL+AC HSGL +E + F M Y + P IEH+ CL
Sbjct: 1284 EALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCL 1343
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD L RAG + +AE I MP + Y+ALL AC T + + K+VA+ ++ L
Sbjct: 1344 VDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDS 1403
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
AYVLLSN YA W +V +AR MK +K PG S ID+K+
Sbjct: 1404 SAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKN 1447
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/423 (27%), Positives = 197/423 (46%), Gaps = 41/423 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +HA V K++ + V NSL++ Y + + A F P D+ SWNT++S Y
Sbjct: 912 LGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYA 971
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHY---GKTVHCYATKVGLEY 117
+ E + F+ L+ +G+ D+ TL + AC+ ++ Y G VH YA K G+
Sbjct: 972 QNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIN 1031
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ AL+ +Y+K +MDEA L++G D
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEA----------------EFLLHGKYDF------------- 1062
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
D+ W ++M G +K+ + +ALE F M + G+ DE + + + A L NL+ G+
Sbjct: 1063 ---DLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGK 1119
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+ + ++ D +V + ++DMY KCG + AL F + D V WTTMI G G
Sbjct: 1120 QIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENG 1179
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+ AL V++ M G++P+E TF +++ A + +G Q+ V ++ +++HF
Sbjct: 1180 DEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIH---ANVVKLDYSLDHF 1236
Query: 358 V--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
V LVD+ + G + A + M K + + A+L + D + M
Sbjct: 1237 VGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQHGHVDEALNLFRTMQSN 1295
Query: 416 GNQ 418
G Q
Sbjct: 1296 GIQ 1298
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 119/431 (27%), Positives = 188/431 (43%), Gaps = 63/431 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK HA + + D Y+ N+LI Y + AR +FDK RD+ +WN++++ Y
Sbjct: 629 LGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYA 688
Query: 61 DFSDSG-----EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
F+DS E LF L G ++TL L C + +TVH YA K+G
Sbjct: 689 QFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF 748
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
E L + AL+ +Y K + +A LFD+M R+ V N+++ Y++ D A F
Sbjct: 749 ELDLFVSGALVNIYCKYGLVGQARLLFDKM-PERDAVLWNVMLKAYVENSFQDEALRFFS 807
Query: 176 EI------------------VDKD---------------------------IVLWRSMMH 190
V+ D I W +
Sbjct: 808 AFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLT 867
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
+ A Q A++ FK ++ + D +V +LSA +L G +H +++++
Sbjct: 868 EFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAP 927
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
V +L++MYSK G + A TF + D+++W TMI A L EA+ F +
Sbjct: 928 VVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLL 987
Query: 311 RKGIKPNEATFVSVLAACR---HSGLITEGCQLFRRMGGVYRVQPTI--EHFV--CLVDL 363
R G+KP++ T SVL AC T G Q+ VY ++ I + FV L+DL
Sbjct: 988 RDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVH-----VYAIKCGIINDSFVSTALIDL 1042
Query: 364 LSRAGLLYQAE 374
S+ G + +AE
Sbjct: 1043 YSKGGKMDEAE 1053
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
++++L+ G+ H I+ + D ++ LI MYSKCGSL A F K+ +D+VTW +
Sbjct: 623 AMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNS 682
Query: 289 MIEGLANYGLGN-----EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
++ A + + E R+F + G T +L C SG + Q+
Sbjct: 683 ILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV----QVSET 738
Query: 344 MGG-VYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYS 400
+ G ++ ++ FV LV++ + GL+ QA MP D + + +L A + S
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVL-WNVMLKAYVENS 797
>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 868
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 149/462 (32%), Positives = 244/462 (52%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH K+ L S+I V N+++ YG+ +A LFD+M RD SWN +++
Sbjct: 378 GLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQ 437
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
G+ L F ++ + D+ T + ACA G VH K G+ + +
Sbjct: 438 NESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFV 497
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+AL+ MY+KC M+EA ++ + ++
Sbjct: 498 GSALVDMYSKCGMMEEA--------------------------------EKIHYRLEEQT 525
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G K+ E++ F M++ GV PD +VL C++L+ + G+ +H
Sbjct: 526 MVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHA 585
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+++ + D ++ + L+DMYSKCG++ ++L+ F K +D VTW MI G A +GLG E
Sbjct: 586 QMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEE 645
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M + IKPN ATFVSVL AC H G +G F++M +Y ++P +EH+ C+V
Sbjct: 646 ALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMV 705
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L R+G + +A I+ MP E I ++ LLS C ++ +K A++++KL +
Sbjct: 706 DILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSS 765
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AY LLSN YA G W +V++ R+ M+ +K+PG S I++K
Sbjct: 766 AYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKEPGCSWIEVK 807
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 182/395 (46%), Gaps = 38/395 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH H KT SD+ VG + + Y + +DA LF +P ++ S+N ++ Y
Sbjct: 276 LGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYA 335
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ LF QL D+++L SA A ++ G +H A K L +
Sbjct: 336 RNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNIC 395
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NA+L MY KC + EA LFDEM EI +
Sbjct: 396 VANAILDMYGKCGALVEASGLFDEM------------------------------EI--R 423
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V W +++ C + + + L F M+ + PDE SVL AC+ G VH
Sbjct: 424 DPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVH 483
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I+++ + FV +AL+DMYSKCG +EEA Y+ + + +V+W +I G +
Sbjct: 484 GRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSE 543
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV-- 358
++ R F M G++P+ T+ +VL C + + G Q+ +M +++ + ++
Sbjct: 544 DSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQM---IKLELLSDVYITS 600
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
LVD+ S+ G ++ + + P D +++ A++
Sbjct: 601 TLVDMYSKCGNMHDSLLMFRKAPKRDS-VTWNAMI 634
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/431 (24%), Positives = 190/431 (44%), Gaps = 74/431 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM----- 56
GK HAH+ + ++V N LI Y + A +F++MP RD+ SWNT++
Sbjct: 43 GKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFGCAG 102
Query: 57 --------SIYNDFSDSGEV-------------------LILFKQLIFEGIVADKITLVI 89
+++N G+V + +F ++ G++ D TL +
Sbjct: 103 AGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAV 162
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
C+ LE G +H A ++G +Y + +AL+ MYAKC ++++L
Sbjct: 163 SLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSL---------- 212
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+VF E+ DK+ + W + + GCV+ Q L+LFK+M
Sbjct: 213 ----------------------DVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQ 250
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+G+ + SV +C+ LS + G +H L+ + D V TA +DMY+KC ++
Sbjct: 251 RKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMS 310
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+A F ++ ++ MI G A G +A ++F Q+++ +E + L+A
Sbjct: 311 DAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAA 370
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRAGLLYQAEEFIKIMPAEDK 385
+EG QL ++ + +C ++D+ + G L +A M D
Sbjct: 371 VIKGHSEGLQLHG-----LAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDP 425
Query: 386 FISYKALLSAC 396
+S+ A+++AC
Sbjct: 426 -VSWNAIITAC 435
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 106/420 (25%), Positives = 195/420 (46%), Gaps = 42/420 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G +H + D D+ G++L+ Y + D+ +F ++P ++ SW+ ++ +
Sbjct: 175 LGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCV 234
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
ND G L LFK++ +GI + T +F +CA L G +HC+A K
Sbjct: 235 QNDQLLRG--LKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSD 292
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + A L MYAKC M +A +LF + N+ S N +I GY
Sbjct: 293 VIVGTATLDMYAKCDNMSDAYKLFSLL-PDHNLQSYNAMIIGY----------------- 334
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+ +Q +A +LF ++ + DE + LSA + + G
Sbjct: 335 --------------ARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQ 380
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H +++N++ + V A++DMY KCG+L EA F + + +D V+W +I
Sbjct: 381 LHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNES 440
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
+ L F M R ++P+E T+ SVL AC + G ++ R + + ++ FV
Sbjct: 441 EGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGR---IIKSGMGLKMFV 497
Query: 359 --CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
LVD+ S+ G++ +AE+ I E +S+ A++S + + ++ ++M+++G
Sbjct: 498 GSALVDMYSKCGMMEEAEK-IHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMG 556
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 128/244 (52%), Gaps = 2/244 (0%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T +F C+ L GK H + G + + N L+ MY KC ++ A ++F+EM
Sbjct: 26 TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK-DIVLWRSMMHGCVKAKQPEEALEL 204
+R+IVS N ++ G ++LA+ VF+ + D+V W S++ G ++ ++++ +
Sbjct: 86 -PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAV 144
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
F KM D GV D + L CS L + G +H +Q D +AL+DMY+K
Sbjct: 145 FLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAK 204
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
C SLE++L F + K+ ++W+ I G L++F +M+RKGI +++T+ SV
Sbjct: 205 CNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASV 264
Query: 325 LAAC 328
+C
Sbjct: 265 FRSC 268
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 9/150 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA + K L SD+Y+ ++L+ Y + D+ ++F K P RD +WN ++ +
Sbjct: 579 LGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFA 638
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK-----LHYGKTVHCYATKVGL 115
E L LF+ ++ E I + T V + AC+ + ++ K YA + L
Sbjct: 639 YHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQL 698
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEM 145
E+ M + L + +++EALRL +M
Sbjct: 699 EHYSCMVDIL----GRSGQVEEALRLIQDM 724
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 155/461 (33%), Positives = 250/461 (54%), Gaps = 41/461 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +H+HV K D +VGN+LI Y + F+DAR +FD+MP RDV SWNT M+
Sbjct: 455 RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAA---- 510
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
++ EG +A + LF + + +
Sbjct: 511 ------------MVREGELAG---VRKLFDEMPEKDTVSW-------------------- 535
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N +L Y K E++ A LF M RN+VS + +++GY +++AR +FD++ K++
Sbjct: 536 NTILDGYTKAGEVEAAFELFQRM-PERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNL 594
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W M+ C + +EA +LF +M + V D +VS+L+AC+ +L G+ +HR+
Sbjct: 595 VTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRY 654
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + N+ + V ALIDM+ KCG + A F +T KD V+W ++I G A +G G++
Sbjct: 655 VRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDK 714
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F QM+++G P+ T ++VL+AC H G + EG + F M Y + P IEH+ C++
Sbjct: 715 ALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMI 774
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R GL+ +A + IK MP E + + +LLSAC + + + N + KL +
Sbjct: 775 DLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAG 834
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y +LSN YA G W+++A+AR MK ++K G+S ++L
Sbjct: 835 NYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVEL 875
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLMSIY 59
+GK +H +V K L +V N+LI + + A +FD +D SWN+++ +
Sbjct: 647 LGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGF 706
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
+ L LF Q+ +G D +T++ + SAC + + G+
Sbjct: 707 AMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGR 751
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 157/464 (33%), Positives = 250/464 (53%), Gaps = 27/464 (5%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG +HA V+K+ +D+Y+G++LI Y + A +F M R++ +WN+L++ Y
Sbjct: 165 MGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYE 224
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYML 119
+ E L +F +++ G+ D++TL + SACA L L G +H K L
Sbjct: 225 QNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDL 284
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NAL+ MYAKC +++EA R+FD M S RN+VS +++GY V AR +F ++
Sbjct: 285 VLGNALVDMYAKCSKVNEARRVFDRM-SIRNVVSETSMVSGYARAASVKAARFMFSKMTQ 343
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+++V W +++ G + + EEAL LF+ + E + P
Sbjct: 344 RNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTH---------------------- 381
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
+ N + D FV +LIDMY KCGS+E+ F K +D V+W +I G A G G
Sbjct: 382 --YTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYG 439
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL++F +M G KP+ T + VL AC H+GL+ EG F M + + P +H+ C
Sbjct: 440 AEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTC 498
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL RAG L +A+ I+ MP + + +LL+AC + ++GK A ++++ +
Sbjct: 499 MVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWN 558
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVLLSN YA G W +V R+ M++ K+PG S I+++
Sbjct: 559 SGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVE 602
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 145/291 (49%), Gaps = 1/291 (0%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L +C R + VH + ++N L+ +Y KC +D+A +LFD M +R
Sbjct: 21 LLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRM-PQR 79
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N + N LI+ +D A +F + + D W SM+ G + + EE+LE F KM
Sbjct: 80 NTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMH 139
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
E +E S LSAC+ L +L G VH + ++ + D ++ +ALIDMYSKCGS+
Sbjct: 140 REDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVA 199
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
A F +++VTW ++I G +EAL VF +M G++P+E T SV++AC
Sbjct: 200 CAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACA 259
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
+ EG Q+ R+ + + + LVD+ ++ + +A M
Sbjct: 260 SLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 33/211 (15%)
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC--------- 265
P+ +L +C + + RLVH IL + + F++ LID+Y KC
Sbjct: 13 PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72
Query: 266 ----------------------GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
G L+EA F D +W +M+ G A + E+L
Sbjct: 73 FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
F +M R+ NE +F S L+AC + G Q+ + R + L+D+
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQV-HALVSKSRYSTDVYMGSALIDM 191
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
S+ G + AEE M E +++ +L++
Sbjct: 192 YSKCGSVACAEEVFSGM-IERNLVTWNSLIT 221
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 151/458 (32%), Positives = 253/458 (55%), Gaps = 4/458 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H H T Y+ N+L+ Y A +F +M D S+N ++ Y
Sbjct: 149 IHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGH 208
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM--E 122
+ E L +++ G+ D+ T++ L C RL GK+VH + + GL N+
Sbjct: 209 NIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILN 268
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
NALL MY KCKE+ A +F+ + R++ +S N +I GY + +++A F+++ +D+
Sbjct: 269 NALLDMYVKCKELRIAQSIFNVI-VRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDL 327
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W S++ G + LF+ M+ E + PD +++++SA + + L +GR +H +
Sbjct: 328 VSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGW 387
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+++ + DAF+ +A IDMY KCGS++ A + F + KDV WTTMI G A +G G++A
Sbjct: 388 VVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKA 447
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L++FY+M+ + PN+ TFV+VL AC HSG +++G ++F M Y ++P +EH+ CLVD
Sbjct: 448 LQLFYEMQEY-VMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVD 506
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL R+G + ++ I++MP + + A+LSAC Y ++ + ++KL +
Sbjct: 507 LLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEGG 566
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
YVLLSN YA G W + R M+ +K G S +
Sbjct: 567 YVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSV 604
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V + + D ++G++ I Y + A ++F ++ +DV W T+++ +
Sbjct: 381 GRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAF 440
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
+ L LF ++ E ++ +++T V + +AC+
Sbjct: 441 HGYGSKALQLFYEMQ-EYVMPNQVTFVAVLTACS 473
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 165/493 (33%), Positives = 251/493 (50%), Gaps = 64/493 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGR----------------------MALFT---- 35
GK +H HV K L+SD +V SLI+ Y + AL T
Sbjct: 151 GKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTL 210
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
DAR LF+++P RD SWN +++ Y E L F+++ + ++ T+V +
Sbjct: 211 RGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTV 270
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+ L G V + GL L + NAL+ MY+KC ++D+A
Sbjct: 271 LSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA------------ 318
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
R++F+ I +KDI+ W M+ G +EAL LF+KM
Sbjct: 319 --------------------RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQ 358
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT-QDAFVKTALIDMYSKCGSLE 269
V P++ VS+L AC+ L L G+ +H +I + + + + T+LIDMY+KCG++E
Sbjct: 359 SNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIE 418
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
A F K + +W MI GLA +G N AL +F QM +G +P++ TFV VL+AC
Sbjct: 419 AAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACS 478
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
H+GL+ G Q F M Y + P ++H+ C++DLL RAGL +AE +K M + +
Sbjct: 479 HAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIW 538
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449
+LL AC + +LG+ A ++ +L ++ AYVLLSN YA G W +VA R + +
Sbjct: 539 GSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDK 598
Query: 450 QTRKKPGNSIIDL 462
+K PG S I++
Sbjct: 599 GMKKVPGCSSIEV 611
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 119/419 (28%), Positives = 214/419 (51%), Gaps = 10/419 (2%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF-----YGRMALFTDARVLFDKMPFRDVGSWNTLMS 57
K +H+ + KT L + + + LI F +G ++ A +LF+ + + WNT++
Sbjct: 49 KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSY---ALLLFESIEQPNQFIWNTMIR 105
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ S + + +++ G+ + T L +CA++ GK +H + K+GLE
Sbjct: 106 GNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLES 165
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ +L+ MYA+ E+ A +F + S R+ VS LI GY +D AR +F+EI
Sbjct: 166 DPFVHTSLINMYAQNGELGYAELVFSK-SSLRDAVSFTALITGYTLRGCLDDARRLFEEI 224
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+D V W +M+ G ++ + EEAL F++M V P+E MV+VLSAC+ +L+ G
Sbjct: 225 PVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGN 284
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
V +I + + + + ALIDMYSKCG L++A F KD+++W MI G ++
Sbjct: 285 WVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMN 344
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F +M++ ++PN+ TFVS+L AC + G + G + + + +
Sbjct: 345 SYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLW 404
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L+D+ ++ G + A++ M + S+ A++S + ++ ++ M G
Sbjct: 405 TSLIDMYAKCGNIEAAKQVFAGMKPK-SLGSWNAMISGLAMHGHANMALELFRQMRDEG 462
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 147/339 (43%), Gaps = 68/339 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G + + + L S++ + N+LI Y + AR LF+ + +D+ SWN ++ Y+
Sbjct: 282 LGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYS 341
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYM 118
+ E L LF+++ + + +T V + ACA L L GK +H Y K +GL
Sbjct: 342 HMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNT 401
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ +L+ MYAKC ++ A++VF +
Sbjct: 402 -SLWTSLIDMYAKCGNIEA--------------------------------AKQVFAGMK 428
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K + W +M+ G ALELF++M DEG PD+ V VLSACS ++ GR
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGR- 487
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+C S ++V Y K + + MI+ L GL
Sbjct: 488 -------------------------QCFS---SMVEDYDISPK-LQHYGCMIDLLGRAGL 518
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+EA + ME +KP+ A + S+L ACR G + G
Sbjct: 519 FDEAEALMKNME---MKPDGAIWGSLLGACRVHGNVELG 554
>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 603
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 157/469 (33%), Positives = 248/469 (52%), Gaps = 40/469 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H + K L+ D++VG++L++ Y + DA+ +F ++ RDV WN +++ Y
Sbjct: 130 KKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKI 189
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
E L +F+++ +G+ + T+ + S A L GKTVH K+G + +++
Sbjct: 190 GCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVS 249
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
NAL+ MY KCK + +AL +F+ +IN +KDI
Sbjct: 250 NALIDMYGKCKHIGDALIIFE-------------MIN-------------------EKDI 277
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W S++ + + L LF KM+ G+ PD + +VL ACS L+ L +GR +H +
Sbjct: 278 FSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGY 337
Query: 243 ILQNNITQD--------AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
++ N + +D V A++DMY+KCGS+ AL F KDV +W MI G
Sbjct: 338 MIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYG 397
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
+G EAL +F QM KPNE T V VL+AC H+G ++ G +M + V PTI
Sbjct: 398 MHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTI 457
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
EH+ C++D+L RAG L A E ++ MP + + ++ALL AC + +L + A +++
Sbjct: 458 EHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVLQ 517
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
L + +YVL+SN Y + G + EV E R+ MKE +K PG S I+LK
Sbjct: 518 LEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTPGCSWIELK 566
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 153/325 (47%), Gaps = 51/325 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H V K DS + V N+LI YG+ DA ++F+ + +D+ SWN+++S++
Sbjct: 230 GKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQ 289
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY---- 117
D L LF +++ GI+ D +T+ + AC+ L L +G+ +H Y GL
Sbjct: 290 CGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDEN 349
Query: 118 ----MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
L + NA++ MYAKC M+ AL++FD M S++++ S NI+I GY
Sbjct: 350 GAVDNLLVSNAVMDMYAKCGSMNNALKIFDSM-SKKDVASWNIMIMGY------------ 396
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
MHG EAL +F +M + P+E +V VLSAC+ +
Sbjct: 397 --------------GMHG-----YALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFV 437
Query: 234 QYGRLVHRFILQNNITQDAFVK----TALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTT 288
+GRL F+ Q T T +IDM + G LE+A K + + V W
Sbjct: 438 SHGRL---FLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRA 494
Query: 289 MIEGLANYG---LGNEALRVFYQME 310
++ +G L A R Q+E
Sbjct: 495 LLGACRLHGNAELAEIAARQVLQLE 519
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 160/344 (46%), Gaps = 36/344 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDA-RVLFDKMPFRDVGSWNTLMSIYN 60
GK LH+ + SLI+ Y + +A V +D R+V ++N ++S +
Sbjct: 30 GKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFV 89
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + +K++ EG++ DK T + C + ++ K +H K+GLE +
Sbjct: 90 SNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEV---KKIHGCLLKMGLELDVF 146
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +AL+ Y K M++A ++VF E+ +
Sbjct: 147 VGSALVNTYLKNGSMEDA--------------------------------QKVFGELSIR 174
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VLW +M++G K +EALE+F++M +GV P + +LS +S +L G+ VH
Sbjct: 175 DVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVH 234
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ V ALIDMY KC + +AL+ F + KD+ +W ++I G +
Sbjct: 235 GIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHD 294
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
LR+F +M GI P+ T +VL AC H + G ++ M
Sbjct: 295 GTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYM 338
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 112/250 (44%), Gaps = 34/250 (13%)
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
V +CA + L+ GK +H G +L+ MY+KC +M EA+ +F +
Sbjct: 15 VAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCH 74
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
RN+ + N +I+G++ L + + +KK
Sbjct: 75 ERNVFAYNAIISGFVSNGLA-------------------------------SKGFQFYKK 103
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M EGV PD+ V+ C + + + +H +L+ + D FV +AL++ Y K GS
Sbjct: 104 MRLEGVMPDKYTFPCVVRTCCEVMEV---KKIHGCLLKMGLELDVFVGSALVNTYLKNGS 160
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+E+A F + +DVV W MI G A G +EAL VF +M KG+ P+ T +L+
Sbjct: 161 MEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSV 220
Query: 328 CRHSGLITEG 337
G + G
Sbjct: 221 FASRGDLDNG 230
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 157/494 (31%), Positives = 255/494 (51%), Gaps = 65/494 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARV---------------------- 39
G+ +H HV K D D+YV SLI Y + DAR
Sbjct: 122 GQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYAS 181
Query: 40 ---------LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+FD++P +DV SWN L+S Y + + E L LFK+++ + D+ T+V +
Sbjct: 182 NGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTV 241
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+ + G+ VH + D+ G N
Sbjct: 242 LSACAQSASIELGRQVHSW--------------------------------IDDHGFGSN 269
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+ +N LI+ YI V+ A +F+ + KD++ W +++ G +EAL LF++M+
Sbjct: 270 LKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 329
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ--NNITQDAFVKTALIDMYSKCGSL 268
G +P+E M+S+L AC+ L + GR +H +I + ++ + ++T+LIDMY+KCG +
Sbjct: 330 SGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDI 389
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E A F + + +W MI G A +G N A +F +M + GI+P++ TFV +L+AC
Sbjct: 390 EAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSAC 449
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
HSG++ G +FR M Y++ P +EH+ C++DLL +GL +AEE I M + +
Sbjct: 450 SHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVI 509
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+ +LL AC + +LG+ A N++K+ ++ +YVLLSN YA G W EVA+ R + +
Sbjct: 510 WCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLND 569
Query: 449 LQTRKKPGNSIIDL 462
+K PG S I++
Sbjct: 570 KGMKKVPGCSSIEI 583
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 143/449 (31%), Positives = 221/449 (49%), Gaps = 45/449 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALF---TDARVLFDKMPFRDVGSWNTLMSIYND 61
+HA + KT L + Y + LI F F T A +FD + ++ WNT+ +
Sbjct: 21 IHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGHAL 80
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
SD L L+ +I G+V + T L ACA+ + G+ +H + K+G + L +
Sbjct: 81 SSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYV 140
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MY K ++A ++FD+ S R++VS LI GY + A+++FDEI KD
Sbjct: 141 HTSLIAMYVKNGRXEDARKVFDQ-SSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKD 199
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G + +EALELFK+M+ V PDE MV+VLSAC+ ++++ GR VH
Sbjct: 200 VVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHS 259
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I + + + ALID+Y KCG +E A F KDV++W T+I G + L E
Sbjct: 260 WIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKE 319
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF----RRMGGVYRVQPTIEHF 357
AL +F +M R G PNE T +S+L AC H G I G + +R+ GV
Sbjct: 320 ALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSL---R 376
Query: 358 VCLVDLLSRAGLLYQAEEFIKIM----------------------PAEDKF--------- 386
L+D+ ++ G + A++ M PA D F
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIE 436
Query: 387 ---ISYKALLSACITYSEFDLGKKVANNM 412
I++ LLSAC DLG+ + +M
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHIFRSM 465
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 157/330 (47%), Gaps = 45/330 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ + S++ + N+LI Y + A LF+ + ++DV SWNTL+ Y
Sbjct: 253 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYT 312
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYM 118
+ E L+LF++++ G +++T++ + ACA L + G+ +H Y K G+
Sbjct: 313 HMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNP 372
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ +L+ MYAKC +++ A ++FD M R++ S N +I G+
Sbjct: 373 SSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGF----------------- 414
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
MHG + A ++F +M +G+ PD+ V +LSACS L GR
Sbjct: 415 ---------AMHG-----RANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRH 460
Query: 239 VHRFILQN-NITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLAN 295
+ R + ++ IT +ID+ G +EA ++ + D D V W ++++
Sbjct: 461 IFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMD-PDGVIWCSLLKACKM 519
Query: 296 YG---LGNEALRVFYQMERKGIKPNEATFV 322
+G LG + ++E K N ++V
Sbjct: 520 HGNVELGESFAQNLIKIEPK----NSGSYV 545
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 152/333 (45%), Gaps = 46/333 (13%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A VFD I + ++++W +M G + P AL L+ MI G+ P+ +L AC+
Sbjct: 56 AISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAK 115
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+ G+ +H +L+ D +V T+LI MY K G E+A F ++ +DVV++T +
Sbjct: 116 SKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTAL 175
Query: 290 IEGLANYG-----------------------------LGN--EALRVFYQMERKGIKPNE 318
I+G A+ G GN EAL +F +M + +KP+E
Sbjct: 176 IKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDE 235
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
+T V+VL+AC S I G Q+ + + ++ L+DL + G + A +
Sbjct: 236 STMVTVLSACAQSASIELGRQVHSWIDD-HGFGSNLKIVNALIDLYIKCGEVETASGLFE 294
Query: 379 IMPAEDKFISYKALLSACITYSEFDLGKKVA---NNMMKLGNQSHEAYVL-----LSNFY 430
+ +D IS+ L+ Y+ +L K+ M++ G +E +L ++
Sbjct: 295 GLSYKD-VISWNTLIGG---YTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLG 350
Query: 431 ALE-GHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A++ G W V +R +K + S+ID+
Sbjct: 351 AIDIGRWIHVYIDKR-LKGVSNPSSLRTSLIDM 382
>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
Length = 950
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 251/447 (56%), Gaps = 2/447 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ +L+ Y + AR + D+MP R+ SW TL++ + ++ E + L+ Q++
Sbjct: 311 DVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQML 370
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+G + + ACA L+ L G+ +H K+ + + +AL+ MY KCK++
Sbjct: 371 ADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLP 430
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+A +F + ++NIV N LI+GY + + A E+F ++ +++ W S++ G + +
Sbjct: 431 DAQMIFYSL-PQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNR 489
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
Q +AL+ F M+ G +P E SVL AC+SL +L+ G++VH I++ I + FV T
Sbjct: 490 QFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGT 549
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
AL DMY+K G L+ + FY+ ++ V WT MI+GLA G E++ +F M GI P
Sbjct: 550 ALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITP 609
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
NE TF+++L AC HSGL+ F M + P +H+ C+VD+L+RAG L +AE+
Sbjct: 610 NEQTFLAILFACSHSGLVEHAMHYFEMMQAC-GISPKAKHYTCMVDVLARAGHLAEAEDL 668
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436
+ + ++ + S+ ALLSAC Y ++G++ A + +L + YVLLSN YA G W
Sbjct: 669 LLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKW 728
Query: 437 TEVAEARRNMKELQTRKKPGNSIIDLK 463
+ AE R MK + +K G S + ++
Sbjct: 729 KDAAEMRILMKGINLKKDGGCSWVQIR 755
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 116/452 (25%), Positives = 207/452 (45%), Gaps = 78/452 (17%)
Query: 36 DARVLFDKMPFRDVGSWNTLMS---------------------------------IYNDF 62
AR LFD MP R V S+ T++ + N+
Sbjct: 166 SARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNEL 225
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL-EYMLNM 121
+ L +F +++ G+ ++ITLV + AC + ++ A K L + L +
Sbjct: 226 PK--DALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGV 283
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ +Y + + D A R+FDEM R++VS L++ Y ++ ++ AR V DE+ +++
Sbjct: 284 RNSLITLYLRKGDADAARRMFDEM-EVRDVVSWTALLDVYAELGDLEGARRVLDEMPERN 342
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +++ + +EA+ L+ +M+ +G P+ SVL AC+SL +L+ GR +H
Sbjct: 343 EVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHN 402
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
L+ + + FV +ALIDMY KC L +A + FY K++V W ++I G +N E
Sbjct: 403 QTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVE 462
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A +F +M + N A++ S+++ + + + F M
Sbjct: 463 AEELFKKMPAR----NVASWNSIISGYAQNRQFIDALKSFHAM----------------- 501
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG-NQSH 420
L + P E I++ ++L AC + ++GK V ++KLG +S
Sbjct: 502 --------LASGQS-----PGE---ITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESI 545
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
LS+ YA G ++ ++R E+ R
Sbjct: 546 FVGTALSDMYAKSG---DLDSSKRVFYEMPKR 574
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 152/356 (42%), Gaps = 71/356 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K A ++++V ++LI Y + DA+++F +P +++ WN+L+S Y++
Sbjct: 397 GRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSN 456
Query: 62 FSDSGEVLILFKQ-------------------------------LIFEGIVADKITLVIL 90
S E LFK+ ++ G +IT +
Sbjct: 457 NSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSV 516
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
ACA L L GK VH K+G++ + + AL MYAK ++D + R+F EM R +
Sbjct: 517 LLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRND 576
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+ W +M+ G + EE++ LF+ MI
Sbjct: 577 VA--------------------------------WTAMIQGLAENGFAEESILLFEDMIS 604
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+TP+E+ +++L ACS +++ + I+ A T ++D+ ++ G L E
Sbjct: 605 AGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAE 664
Query: 271 ALVTFYKTDCK-DVVTWTTMIEGL---ANYGLGNEALRVFYQMERKGIKPNEATFV 322
A K + K + +W ++ N +G A + +++ K N A +V
Sbjct: 665 AEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELD----KDNTAGYV 716
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MGK +HA + K + I+VG +L Y + ++ +F +MP R+ +W ++
Sbjct: 528 MGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLA 587
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLE 116
+ + E ++LF+ +I GI ++ T + + AC+ +HY + + +
Sbjct: 588 ENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAK 647
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI---NGYIDMELVDLAREV 173
+ M + L A+ + EA L ++ S+ S L+ N Y + E+ + A +
Sbjct: 648 HYTCMVDVL----ARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKR 703
Query: 174 FDEIVDKD----IVLWRSMMHGCVKAKQPEEALELFK 206
E+ DKD VL +M C K K E L K
Sbjct: 704 LQEL-DKDNTAGYVLLSNMYASCGKWKDAAEMRILMK 739
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 161/443 (36%), Positives = 244/443 (55%), Gaps = 9/443 (2%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N L+ Y + + DAR LFD+MP RDV SWNT++S Y D L K+L E +
Sbjct: 205 NCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGD----LSQAKRLFNESPI 260
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
D T + S + + + Y ++ ++ ++ NA+L Y + K+M A L
Sbjct: 261 RDVFTWTAMVSGYVQNGMVDEARK---YFDEMPVKNEISY-NAMLAGYVQYKKMVIAGEL 316
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
F+ M R NI S N +I GY + AR++FD + +D V W +++ G + EEA
Sbjct: 317 FEAMPCR-NISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEA 375
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L +F +M +G + + LS C+ ++ L+ G+ VH +++ FV AL+ M
Sbjct: 376 LNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGM 435
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y KCGS +EA F + KDVV+W TMI G A +G G +AL +F M++ G+KP+E T
Sbjct: 436 YFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITM 495
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
V VL+AC HSGLI G + F M Y V+PT +H+ C++DLL RAG L +AE ++ MP
Sbjct: 496 VGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMP 555
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
+ S+ ALL A + +LG+K A + K+ Q+ YVLLSN YA G W +V +
Sbjct: 556 FDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGK 615
Query: 442 ARRNMKELQTRKKPGNSIIDLKH 464
R M+E +K G S +++++
Sbjct: 616 MRSKMREAGVQKVTGYSWVEVQN 638
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 165/407 (40%), Gaps = 106/407 (26%)
Query: 3 KGLHAHVTKTALDSDIYVGNSL-----------IHFYGRMALFTDARVLFDKMPFRDVGS 51
K + +H+ DS + V NS+ I Y R A F+ AR LFDKMP RD+ S
Sbjct: 51 KAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFS 110
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN +++ Y GE LF + + +V+
Sbjct: 111 WNVMLTGYVRNRRLGEAHKLFDLMPKKDVVS----------------------------- 141
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
NA+L YA+ +DEA +F++M RN +S N L+ Y+ + AR
Sbjct: 142 ----------WNAMLSGYAQNGFVDEAREVFNKM-PHRNSISWNGLLAAYVHNGRLKEAR 190
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
+F+ + +++ W +M G VK +A +LF +M
Sbjct: 191 RLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRM----------------------- 227
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
+D +I Y++ G L +A F ++ +DV TWT M+
Sbjct: 228 ----------------PVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVS 271
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA-CRHSGLITEGCQLFRRMGGVYRV 350
G G+ +EA + F +M K NE ++ ++LA ++ ++ G +LF M
Sbjct: 272 GYVQNGMVDEARKYFDEMPVK----NEISYNAMLAGYVQYKKMVIAG-ELFEAM------ 320
Query: 351 QP--TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
P I + ++ + G + QA + +MP D +S+ A++S
Sbjct: 321 -PCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRD-CVSWAAIISG 365
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V K ++ +VGN+L+ Y + +A +F+ + +DV SWNT+++ Y
Sbjct: 409 LGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYA 468
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
+ L+LF+ + G+ D+IT+V + SAC+
Sbjct: 469 RHGFGRQALVLFESMKKAGVKPDEITMVGVLSACS 503
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 92/232 (39%), Gaps = 18/232 (7%)
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D DIV W + ++ + AL +F M P + L N ++
Sbjct: 43 DPDIVTWNKAISSHMRNGHCDSALRVFNSM------PRRSSVSYNAMISGYLRNAKFS-- 94
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+ R + +D F ++ Y + L EA F KDVV+W M+ G A G
Sbjct: 95 LARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGF 154
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
+EA VF +M + N ++ +LAA H+G + E +LF + +
Sbjct: 155 VDEAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEARRLFESQSNWELIS-----WN 205
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
CL+ + +L A + MP D IS+ ++S + K++ N
Sbjct: 206 CLMGGYVKRNMLGDARQLFDRMPVRD-VISWNTMISGYAQVGDLSQAKRLFN 256
>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
Length = 950
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 251/447 (56%), Gaps = 2/447 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ +L+ Y + AR + D+MP R+ SW TL++ + ++ E + L+ Q++
Sbjct: 311 DVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQML 370
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+G + + ACA L+ L G+ +H K+ + + +AL+ MY KCK++
Sbjct: 371 ADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLP 430
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+A +F + ++NIV N LI+GY + + A E+F ++ +++ W S++ G + +
Sbjct: 431 DAQMIFYSL-PQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNR 489
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
Q +AL+ F M+ G +P E SVL AC+SL +L+ G++VH I++ I + FV T
Sbjct: 490 QFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGT 549
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
AL DMY+K G L+ + FY+ ++ V WT MI+GLA G E++ +F M GI P
Sbjct: 550 ALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITP 609
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
NE TF+++L AC HSGL+ F M + P +H+ C+VD+L+RAG L +AE+
Sbjct: 610 NEQTFLAILFACSHSGLVEHAMHYFEMMQAC-GISPKAKHYTCMVDVLARAGHLAEAEDL 668
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436
+ + ++ + S+ ALLSAC Y ++G++ A + +L + YVLLSN YA G W
Sbjct: 669 LLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKW 728
Query: 437 TEVAEARRNMKELQTRKKPGNSIIDLK 463
+ AE R MK + +K G S + ++
Sbjct: 729 KDAAEMRILMKGINLKKDGGCSWVQIR 755
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 116/452 (25%), Positives = 207/452 (45%), Gaps = 78/452 (17%)
Query: 36 DARVLFDKMPFRDVGSWNTLMS---------------------------------IYNDF 62
AR LFD MP R V S+ T++ + N+
Sbjct: 166 SARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNEL 225
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL-EYMLNM 121
+ L +F +++ G+ ++ITLV + AC + ++ A K L + L +
Sbjct: 226 PK--DALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGV 283
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ +Y + + D A R+FDEM R++VS L++ Y ++ ++ AR V DE+ +++
Sbjct: 284 RNSLITLYLRKGDADAARRMFDEM-EVRDVVSWTALLDVYAELGDLEGARRVLDEMPERN 342
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +++ + +EA+ L+ +M+ +G P+ SVL AC+SL +L+ GR +H
Sbjct: 343 EVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHN 402
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
L+ + + FV +ALIDMY KC L +A + FY K++V W ++I G +N E
Sbjct: 403 QTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVE 462
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A +F +M + N A++ S+++ + + + F M
Sbjct: 463 AEELFKKMPAR----NVASWNSIISGYAQNRQFIDALKSFHAM----------------- 501
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG-NQSH 420
L + P E I++ ++L AC + ++GK V ++KLG +S
Sbjct: 502 --------LASGQS-----PGE---ITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESI 545
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
LS+ YA G ++ ++R E+ R
Sbjct: 546 FVGTALSDMYAKSG---DLDSSKRVFYEMPKR 574
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 152/356 (42%), Gaps = 71/356 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K A ++++V ++LI Y + DA+++F +P +++ WN+L+S Y++
Sbjct: 397 GRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSN 456
Query: 62 FSDSGEVLILFKQ-------------------------------LIFEGIVADKITLVIL 90
S E LFK+ ++ G +IT +
Sbjct: 457 NSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSV 516
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
ACA L L GK VH K+G++ + + AL MYAK ++D + R+F EM R +
Sbjct: 517 LLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRND 576
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+ W +M+ G + EE++ LF+ MI
Sbjct: 577 VA--------------------------------WTAMIQGLAENGFAEESILLFEDMIS 604
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+TP+E+ +++L ACS +++ + I+ A T ++D+ ++ G L E
Sbjct: 605 AGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAE 664
Query: 271 ALVTFYKTDCK-DVVTWTTMIEGL---ANYGLGNEALRVFYQMERKGIKPNEATFV 322
A K + K + +W ++ N +G A + +++ K N A +V
Sbjct: 665 AEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELD----KDNTAGYV 716
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MGK +HA + K + I+VG +L Y + ++ +F +MP R+ +W ++
Sbjct: 528 MGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLA 587
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLE 116
+ + E ++LF+ +I GI ++ T + + AC+ +HY + + +
Sbjct: 588 ENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAK 647
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI---NGYIDMELVDLAREV 173
+ M + L A+ + EA L ++ S+ S L+ N Y + E+ + A +
Sbjct: 648 HYTCMVDVL----ARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKR 703
Query: 174 FDEIVDKD----IVLWRSMMHGCVKAKQPEEALELFK 206
E+ DKD VL +M C K K E L K
Sbjct: 704 LQEL-DKDNTAGYVLLSNMYASCGKWKDAAEMRILMK 739
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 157/460 (34%), Positives = 246/460 (53%), Gaps = 24/460 (5%)
Query: 28 YGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI------FEGIV 81
+ R +AR LFD+MP R+V +WN +++ Y E + LF ++ + ++
Sbjct: 243 FARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVI 302
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME-----------------NA 124
+ + L A L ++ Y A G M+ N
Sbjct: 303 NGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNT 362
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
++ Y++C MDEAL LF +M +++IVS N ++ Y + +D A ++F+E+ +K+IV
Sbjct: 363 MIAGYSQCGRMDEALHLFKQM-VKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVS 421
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W S++ G + +AL+ F M EG PD+ LS+C+ L+ LQ G+ +H+ ++
Sbjct: 422 WNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVM 481
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
++ D FV ALI MY+KCGS+ A + F D DVV+W ++I A G G EAL+
Sbjct: 482 KSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALK 541
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+F++ME +G+ P+E TFV +L+AC H GLI +G +LF+ M Y ++P EH+ C+VDLL
Sbjct: 542 LFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLL 601
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
RAG L +A + ++ M + ALL AC + +L K A +++ YV
Sbjct: 602 GRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYV 661
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
LLSN A G W EVA RR MKE K+PG S I+L++
Sbjct: 662 LLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQN 701
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 97/399 (24%), Positives = 185/399 (46%), Gaps = 42/399 (10%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY--NDFSDSGEVLILFKQLIFEG 79
NS+I + + +DAR LFD MP R++ SWN++++ Y ND + +QL +
Sbjct: 50 NSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEA------RQLFDKM 103
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME--NALLLMYAKCKEMDE 137
D + ++ + R +L + + L Y N NA++ YAK ++ DE
Sbjct: 104 PTRDLYSWTLMITCYTRNGELAKARNLFNL-----LPYKWNPVCCNAMVAGYAKNRQFDE 158
Query: 138 ALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ 197
A RLFD M + +++VS N ++ GY + L + F+E+ ++D+V W M+ G V+
Sbjct: 159 ARRLFDAMPA-KDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGD 217
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL-QYGRLVHRFILQNNITQDAFVKT 256
+ E F+K+ + P+ V++L + + + RL + ++N + +
Sbjct: 218 LNSSWEFFEKIPN----PNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWN----- 268
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
A+I Y + ++EA+ F + K+ ++WTT+I G G +EA ++ QM + +
Sbjct: 269 AMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAA 328
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL---SRAGLLYQA 373
A + R + + Q+F Q +I VC ++ S+ G + +A
Sbjct: 329 QTAMISGYVQNKR----MDDARQIFN--------QISIRDVVCWNTMIAGYSQCGRMDEA 376
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
K M +D +S+ ++++ + D K+ M
Sbjct: 377 LHLFKQMVKKD-IVSWNTMVASYAQVGQMDAAIKIFEEM 414
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 118/266 (44%), Gaps = 33/266 (12%)
Query: 8 HVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGE 67
H+ K + DI N+++ Y ++ A +F++M +++ SWN+L+S +
Sbjct: 378 HLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLD 437
Query: 68 VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLL 127
L F + EG D+ T S+CA L L GK +H K G L + NAL+
Sbjct: 438 ALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALIT 497
Query: 128 MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRS 187
MYAKC + A EL +F +I D+V W S
Sbjct: 498 MYAKCGSISSA--------------------------EL------LFKDIDHFDVVSWNS 525
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN- 246
++ EAL+LF KM EGV PDE V +LSACS + + G + + ++Q
Sbjct: 526 LIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAY 585
Query: 247 NITQDAFVKTALIDMYSKCGSLEEAL 272
NI A ++D+ + G LEEA
Sbjct: 586 NIEPLAEHYACMVDLLGRAGRLEEAF 611
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 4/176 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH V K+ +D++V N+LI Y + + A +LF + DV SWN+L++ Y
Sbjct: 472 VGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYA 531
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
+ E L LF ++ EG+ D++T V + SAC+ + + G K C +E +
Sbjct: 532 LNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLA 591
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLARE 172
++ + + ++EA +L M N L+ + ++EL A E
Sbjct: 592 EHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAE 647
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 128/314 (40%), Gaps = 49/314 (15%)
Query: 130 AKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMM 189
K ++DEA+++F M + +N V+ N +I+ + + AR++FD + ++IV W SM+
Sbjct: 26 GKSGQIDEAIKVFQHM-THKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMI 84
Query: 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249
+ + EEA +LF KM P ++ L N + + + F L
Sbjct: 85 AAYLHNDRVEEARQLFDKM------PTRDLYSWTLMITCYTRNGELAKARNLFNLL-PYK 137
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
+ A++ Y+K +EA F KD+V+W +M+ G G L+ F +M
Sbjct: 138 WNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEM 197
Query: 310 ERKGI---------------------------KPNEATFVSVLAACRHSGLITEGCQLFR 342
+ + PN ++V++L G I E +LF
Sbjct: 198 AERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFD 257
Query: 343 RMG--GVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT 398
+M V I +V C VD +A MP E IS+ +++ +
Sbjct: 258 QMPIRNVVAWNAMIAAYVQNCHVD---------EAISLFMEMP-EKNSISWTTVINGYVR 307
Query: 399 YSEFDLGKKVANNM 412
+ D +++ N M
Sbjct: 308 MGKLDEARQLLNQM 321
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 159/464 (34%), Positives = 249/464 (53%), Gaps = 4/464 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF---YGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
K +HA + KT L D Y + A+++FD D WN ++ +
Sbjct: 60 KQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGF 119
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ + L+L+++++ + T L AC+ L L +H TK+G E +
Sbjct: 120 SCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDV 179
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N+L+ YA A LFD + + + VS N +I GY +D+A +F ++V+
Sbjct: 180 YAVNSLINSYAATGNFKLAHLLFDRI-PKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVE 238
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K+ + W +M+ G V+A +EAL+LF +M + V PD + + LSAC+ L L+ G+ +
Sbjct: 239 KNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWI 298
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ + I D+ + LIDMY+KCG + EAL F K V WT +I G A +G G
Sbjct: 299 HSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHG 358
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA+ F +M++ GIKPN TF +VL AC ++GL+ EG +F M Y ++PTIEH+ C
Sbjct: 359 REAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGC 418
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLLSRAGLL +A+ FI+ MP + + + ALL AC + +LG+++ ++ +
Sbjct: 419 VVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYH 478
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YV +N +A+ W + AE RR MKE K PG S I L+
Sbjct: 479 GGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLE 522
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 102/234 (43%), Gaps = 12/234 (5%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+++TKT + D +G LI Y + +A +F + + V +W L+S Y
Sbjct: 295 GKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAY 354
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLN 120
E + F ++ GI + IT + +AC+ + GK + + L+ +
Sbjct: 355 HGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIE 414
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++ + ++ +DEA R EM + N V L+ + ++L E+ + ++
Sbjct: 415 HYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAI 474
Query: 181 DIVLWRSMMHGC---VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
D +H K+ ++A E + M ++G V+ + CS++S
Sbjct: 475 DPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQG--------VAKVPGCSTIS 520
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 255/465 (54%), Gaps = 6/465 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLI-HFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN- 60
K +HA + T L N L+ A + A ++FD P D+ +NT++ +
Sbjct: 18 KQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLFLYNTIIKVLAF 77
Query: 61 DFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ S + F+ LI E +V ++ + F C + G+ V +A K+GLE L
Sbjct: 78 STTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLGLENNL 137
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NAL+ MY + +A ++FD R++ S NI+++GY + +D AR++FDE+ +
Sbjct: 138 FVTNALIGMYVNLDFVVDARKVFD-WSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPE 196
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KD+V W +M+ GC++ EAL++F M+ +G++P+E + S L+AC++L L GR +
Sbjct: 197 KDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWM 256
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD--CKDVVTWTTMIEGLANYG 297
H +I +NNI + + LIDMY+KCG LE A F + V W MI G A +G
Sbjct: 257 HVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHG 316
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EA+ VF QM+ + + PN+ TFV++L AC H + EG F M YRV+P +EH+
Sbjct: 317 KSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHY 376
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
CLVDLL RAG L +AEE I M + ALLSAC + + ++G++V + +L
Sbjct: 377 GCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDP 436
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+VLL+N Y+L G+W E R + E +K PG S I+L
Sbjct: 437 NHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIEL 481
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 143/326 (43%), Gaps = 67/326 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ + H K L+++++V N+LI Y + DAR +FD P RD+ SWN ++S Y
Sbjct: 121 GEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYAR 180
Query: 62 FSD-----------------------SG--------EVLILFKQLIFEGIVADKITLVIL 90
SG E L +F ++ +G+ ++ TL
Sbjct: 181 LGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASS 240
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
+ACA L L G+ +H Y K ++ + L+ MYAKC E++ A +LF+
Sbjct: 241 LAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPR--- 297
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
L R+V+ W +M+ G + +EA+E+F++M
Sbjct: 298 ------------------LKRKVWP---------WNAMIGGFAVHGKSKEAIEVFEQMKI 330
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLE 269
E V+P++ V++L+ACS + ++ GR + + + + L+D+ + G L+
Sbjct: 331 EKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLK 390
Query: 270 EA---LVTFYKTDCKDVVTWTTMIEG 292
EA + + + T DV W ++
Sbjct: 391 EAEEIISSMHLT--PDVAIWGALLSA 414
>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 771
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 251/463 (54%), Gaps = 34/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA + K +D +V +L+ Y + A +FD+MP R++ SWN+++ +
Sbjct: 219 GQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVK 278
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
G + +F++++ G D++++ + SACA L +L +GK VH K GL ++ +
Sbjct: 279 NKLYGRAIGVFREVLSLG--PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYV 336
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+N+L+ MY KC ++A +LF G D+D
Sbjct: 337 KNSLVDMYCKCGLFEDATKLFCGGG--------------------------------DRD 364
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W M+ GC + + E+A F+ MI EGV PDE S+ A +S++ L G ++H
Sbjct: 365 VVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHS 424
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+L+ +++ + ++L+ MY KCGS+ +A F +T +VV WT MI +G NE
Sbjct: 425 HVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANE 484
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+++F +M +G+ P TFVSVL+AC H+G I +G + F M V+ ++P +EH+ C+V
Sbjct: 485 AIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMV 544
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R G L +A FI+ MP E + + ALL AC ++ ++G++VA + KL +
Sbjct: 545 DLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPG 604
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
Y+LLSN Y G E E RR M RK+ G S ID+K+
Sbjct: 605 NYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKN 647
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 148/340 (43%), Gaps = 48/340 (14%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L + A+L+ L + +H L N LLL+YAKC + L LF
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLF------- 155
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N Y ++V W ++++ ++ +P +AL F +M
Sbjct: 156 ---------NTYPH--------------PSTNVVTWTTLINQLSRSNKPFQALTFFNRMR 192
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
G+ P+ ++L AC+ + L G+ +H I ++ D FV TAL+DMY+KCGS+
Sbjct: 193 TTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSML 252
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
A F + +++V+W +MI G L A+ VF ++ G P++ + SVL+AC
Sbjct: 253 LAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSAC- 309
Query: 330 HSGLI-------TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382
+GL+ G + R + G+ V+ + LVD+ + GL A +
Sbjct: 310 -AGLVELDFGKQVHGSIVKRGLVGLVYVKNS------LVDMYCKCGLFEDATKLF-CGGG 361
Query: 383 EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
+ +++ ++ C F+ M++ G + EA
Sbjct: 362 DRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEA 401
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 153/460 (33%), Positives = 246/460 (53%), Gaps = 32/460 (6%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H + K LD +++V N++I YG++ + + R +FD M RD+ +WN+++S +
Sbjct: 192 MHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQ 251
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM-LNMEN 123
+ +F + G+ D +TL+ L SA A+ + G++VHCY + G + + N
Sbjct: 252 VASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGN 311
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
A++ MYAK +++ A R+FD M R+ VS N LI GY+ L A V+D +
Sbjct: 312 AIVDMYAKLSKIEAAQRMFDSM-PVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKH--- 367
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
EG+ P + VSVL A S L LQ G +H
Sbjct: 368 ---------------------------EGLKPIQGTFVSVLPAYSHLGALQQGTRMHALS 400
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++ + D +V T +ID+Y+KCG L+EA++ F +T + W +I G+ +G G +AL
Sbjct: 401 IKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKAL 460
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
+F QM+++GI P+ TFVS+LAAC H+GL+ +G F M Y ++P +H+ C+VD+
Sbjct: 461 SLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDM 520
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
RAG L A +FI+ MP + + ALL AC + ++GK + N+ +L ++ Y
Sbjct: 521 FGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYY 580
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
VL+SN YA G W V E R ++ +K PG S I++K
Sbjct: 581 VLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVK 620
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/382 (28%), Positives = 184/382 (48%), Gaps = 40/382 (10%)
Query: 5 LHAHVTKTAL-DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFS 63
LHA + L D + +L+H Y R DA FD+M RDV +WN ++S +
Sbjct: 90 LHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNA 149
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
+ E + LF +++ EG+ D +T+ + C L +H YA K GL+ L + N
Sbjct: 150 RAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCN 209
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
A++ +Y K ++E ++FD M SR D+V
Sbjct: 210 AMIDVYGKLGMLEEVRKVFDGMSSR--------------------------------DLV 237
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W S++ G + Q A+E+F M D GV+PD ++S+ SA + ++ GR VH ++
Sbjct: 238 TWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYM 297
Query: 244 LQNNI-TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
++ D A++DMY+K +E A F +D V+W T+I G GL +EA
Sbjct: 298 VRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEA 357
Query: 303 LRVFYQMER-KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--C 359
+ V+ M++ +G+KP + TFVSVL A H G + +G ++ + ++ +V C
Sbjct: 358 IHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALS---IKTGLNLDVYVGTC 414
Query: 360 LVDLLSRAGLLYQAEEFIKIMP 381
++DL ++ G L +A + P
Sbjct: 415 VIDLYAKCGKLDEAMLLFEQTP 436
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 9/252 (3%)
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
R + + L++ Y+ V A FDE+ +D+ W +M+ G + + EA+ LF +
Sbjct: 101 RGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGR 160
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M+ EGV D + SVL C L + +H + +++ + + FV A+ID+Y K G
Sbjct: 161 MVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGM 220
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
LEE F +D+VTW ++I G G A+ +F M G+ P+ T +S+ +A
Sbjct: 221 LEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASA 280
Query: 328 CRHSGLITEG----CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
G I G C + RR V I +VD+ ++ + A+ MP
Sbjct: 281 IAQCGDICGGRSVHCYMVRRGWDV----GDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVR 336
Query: 384 DKFISYKALLSA 395
D +S+ L++
Sbjct: 337 DA-VSWNTLITG 347
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 1/145 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HA KT L+ D+YVG +I Y + +A +LF++ P R G WN ++S
Sbjct: 393 GTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGV 452
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-VHCYATKVGLEYMLN 120
+ L LF Q+ EGI D +T V L +AC+ + G+ + T G++ +
Sbjct: 453 HGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAK 512
Query: 121 MENALLLMYAKCKEMDEALRLFDEM 145
++ M+ + ++D+A M
Sbjct: 513 HYACMVDMFGRAGQLDDAFDFIRNM 537
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 163/465 (35%), Positives = 255/465 (54%), Gaps = 9/465 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD-ARVLFDKMPFRDVGSWNTLMSIYNDFS 63
++ H+ KT L + + F + + A LF +MP ++ SWNT++ ++ S
Sbjct: 47 IYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNPNLYSWNTIIRAFSRSS 106
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
+ LF +++ I +T +F A A+L HYG +H K+GL+ + N
Sbjct: 107 TPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICN 166
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSR-----RNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ MYA M EA R+FD G + ++V++N +I GY +D +R +FD+++
Sbjct: 167 TIIYMYANGGLMSEARRVFD--GKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMI 224
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+ V W SM+ G V+ + EALELF KM EG E MVS+L+AC+ L LQ+G+
Sbjct: 225 TRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKW 284
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH +I +N+ + V TA+IDMY KCGS+E A+ F + + W ++I GLA G
Sbjct: 285 VHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGH 344
Query: 299 GNEALRVFYQME-RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EA F ++E K +KP+ +F+ VL AC+H G I + F M Y ++P+I+H+
Sbjct: 345 EREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEPSIKHY 404
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VD+L +AGLL +AEE IK MP + I + +LLS+C + + ++ A + +L
Sbjct: 405 TCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLSSCRKHRNVQIARRAAQRVYELNP 464
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVL+SN +A + E E R MKE T K+PG S I+L
Sbjct: 465 SDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTEKEPGCSSIEL 509
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 130/331 (39%), Gaps = 78/331 (23%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARV---------------------- 39
G LH V K L +D ++ N++I+ Y L ++AR
Sbjct: 146 GAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIM 205
Query: 40 -------------LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKIT 86
LFD M R SWN+++S Y E L LF ++ EG + T
Sbjct: 206 GYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFT 265
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+V L +ACA L L +GK VH Y + E + + A++ MY KC ++ A+
Sbjct: 266 MVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAV------- 318
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
EVF+ + + W S++ G EA E F
Sbjct: 319 -------------------------EVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFS 353
Query: 207 KMIDEG-VTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQNNITQDAFVKTALID 260
K+ + PD + VL+AC L + R +++++ ++ +I T ++D
Sbjct: 354 KLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEPSIKH----YTCIVD 409
Query: 261 MYSKCGSLEEALVTFYKTDCK-DVVTWTTMI 290
+ + G LEEA K D + W +++
Sbjct: 410 VLGQAGLLEEAEELIKGMPLKPDAIIWGSLL 440
>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
Length = 813
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 158/455 (34%), Positives = 236/455 (51%), Gaps = 33/455 (7%)
Query: 10 TKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVL 69
+K+ L + +G +L+ Y + AR +FD MP R+ +W+ L+ + S +
Sbjct: 265 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAF 324
Query: 70 ILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
+LFK ++ +G+ ++ ACA L+ L G+ +H K G+ L N+LL M
Sbjct: 325 LLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSM 384
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
YAK L+D A +FDE+ KD V + ++
Sbjct: 385 YAKAG--------------------------------LIDQAIALFDEMAVKDTVSYSAL 412
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ G V+ + EEA +FKKM V PD MVS++ ACS L+ LQ+GR H ++ +
Sbjct: 413 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGL 472
Query: 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
+ + ALIDMY+KCG ++ + F +D+V+W TMI G +GLG EA +F +
Sbjct: 473 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLE 532
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
M G P+ TF+ +L+AC HSGL+ EG F M Y + P +EH++C+VDLLSR G
Sbjct: 533 MNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGG 592
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428
L +A EFI+ MP + ALL AC Y DLGKKV+ + +LG + +VLLSN
Sbjct: 593 FLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSN 652
Query: 429 FYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+ G + E AE R K +K PG S I++
Sbjct: 653 IYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 687
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 197/434 (45%), Gaps = 60/434 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ +H H L +D++V +L+ Y + A DA +F MP RD+ +WN +++ Y
Sbjct: 144 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 203
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ +L Q+ + + TLV L A+ L G +VH Y + L
Sbjct: 204 HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNR 263
Query: 120 N----------MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169
N + ALL MYAKC + L+
Sbjct: 264 NSKSKLTDGVLLGTALLDMYAKCGSL-----LY--------------------------- 291
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV---TPDEEVMVSVLSA 226
AR VFD + ++ V W +++ G V + +A LFK M+ +G+ +P + S L A
Sbjct: 292 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRA 349
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C+SL +L+ G +H + ++ + D +L+ MY+K G +++A+ F + KD V++
Sbjct: 350 CASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSY 409
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG-CQLFRRMG 345
+ ++ G G EA VF +M+ ++P+ AT VS++ AC H + G C G
Sbjct: 410 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCS----HG 465
Query: 346 GVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
V E +C L+D+ ++ G + + + +MP+ D +S+ +++ Y
Sbjct: 466 SVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD-IVSWNTMIAG---YGIHG 521
Query: 404 LGKKVANNMMKLGN 417
LGK+ +++ N
Sbjct: 522 LGKEATALFLEMNN 535
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 148/320 (46%), Gaps = 41/320 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ LHA + K+ + +D+ GNSL+ Y + L A LFD+M +D S++ L+S Y
Sbjct: 358 MGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYV 417
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E ++FK++ + D T+V L AC+ L L +G+ H GL +
Sbjct: 418 QNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS 477
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC +D + ++F+ M S R+IVS N +I GY
Sbjct: 478 ICNALIDMYAKCGRIDLSRQVFNMMPS-RDIVSWNTMIAGY------------------- 517
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+HG K EA LF +M + G PD + +LSACS + G+ H
Sbjct: 518 -------GIHGLGK-----EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGK--H 563
Query: 241 RFILQNN---ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL--- 293
F + + +T ++D+ S+ G L+EA + DV W ++
Sbjct: 564 WFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVY 623
Query: 294 ANYGLGNEALRVFYQMERKG 313
N LG + R+ ++ +G
Sbjct: 624 KNIDLGKKVSRMIQELGPEG 643
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 162/375 (43%), Gaps = 45/375 (12%)
Query: 34 FTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEV--LILFKQLIFEGIVADKITLVILF 91
+ A LFD++P DV ++N L+ Y+ S + L L+++++ + + T
Sbjct: 73 LSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFAL 132
Query: 92 SACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNI 151
AC+ L H G+ +H +A GL+ L + ALL MY KC + +A +F M + R++
Sbjct: 133 KACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPA-RDL 191
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
V+ N ++ GY M H V A L +M
Sbjct: 192 VAWNAMLAGYAH----------------------HGMYHHAV-------AHLLSMQMQMH 222
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVH----RFILQNN------ITQDAFVKTALIDM 261
+ P+ +V++L + L G VH R L +N +T + TAL+DM
Sbjct: 223 RLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDM 282
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK-PNEAT 320
Y+KCGSL A F ++ VTW+ +I G +A +F M +G+ + +
Sbjct: 283 YAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS 342
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
S L AC + G QL + V + L+ + ++AGL+ QA M
Sbjct: 343 IASALRACASLDHLRMGEQLHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAIALFDEM 401
Query: 381 PAEDKFISYKALLSA 395
+D +SY AL+S
Sbjct: 402 AVKDT-VSYSALVSG 415
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 117/251 (46%), Gaps = 26/251 (10%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA---LELFKKMIDEGVTPDEEVMVSVLSA 226
A +FD+I D+ + ++ + P A L L+++M+ V P+ L A
Sbjct: 76 AHHLFDQIPSPDVRTYNDLIRA-YSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKA 134
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
CS+L++ GR +HR + + D FV TAL+DMY KC L +A F +D+V W
Sbjct: 135 CSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAW 194
Query: 287 TTMIEGLANYGLGNEALR--VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
M+ G A++G+ + A+ + QM+ ++PN +T V++L G + +G +
Sbjct: 195 NAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVH--- 251
Query: 345 GGVYRVQPTIEH--------------FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
YR++ + L+D+ ++ G L A MPA ++ +++
Sbjct: 252 --AYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE-VTWS 308
Query: 391 ALLSACITYSE 401
AL+ + S
Sbjct: 309 ALIGGFVLCSR 319
>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Glycine max]
Length = 975
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 154/460 (33%), Positives = 247/460 (53%), Gaps = 32/460 (6%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H + + D V N+ + Y + + A +F M + V SWN L+ +
Sbjct: 421 KEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQN 480
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
G+ L LF ++ G+ D+ T+ L ACARL+ L GK +H + + GLE +
Sbjct: 481 GFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIG 540
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
+L+ +Y +C M L + +FD++ +K +
Sbjct: 541 ISLMSLYIQCSSML--------------------------------LGKLIFDKMENKSL 568
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W M+ G + + P EAL+ F++M+ G+ P E + VL ACS +S L+ G+ VH F
Sbjct: 569 VCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSF 628
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
L+ ++++DAFV ALIDMY+KCG +E++ F + + KD W +I G +G G +A
Sbjct: 629 ALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKA 688
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
+ +F M+ KG +P+ TF+ VL AC H+GL+TEG + +M +Y V+P +EH+ C+VD
Sbjct: 689 IELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVD 748
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
+L RAG L +A + + MP E + +LLS+C Y + ++G++V+ +++L E
Sbjct: 749 MLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAEN 808
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA G W EV + R+ MKE K G S I++
Sbjct: 809 YVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEI 848
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 183/390 (46%), Gaps = 38/390 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG +H K + ++ V NSL+ Y + +AR LFD ++V SWNT++ Y+
Sbjct: 317 MGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYS 376
Query: 61 DFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
D V L +++ E V +++T++ + AC+ +L K +H YA + G
Sbjct: 377 KEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDE 436
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NA + YAKC +D A R+F M + + S N LI + A+ F
Sbjct: 437 LVANAFVAAYAKCSSLDCAERVFCGM-EGKTVSSWNALIGAH--------AQNGF----- 482
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
P ++L+LF M+D G+ PD + S+L AC+ L L+ G+ +
Sbjct: 483 ------------------PGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEI 524
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H F+L+N + D F+ +L+ +Y +C S+ + F K + K +V W MI G + L
Sbjct: 525 HGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELP 584
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV- 358
EAL F QM GIKP E VL AC + G ++ + + + FV
Sbjct: 585 CEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSF---ALKAHLSEDAFVT 641
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
L+D+ ++ G + Q++ + +D+ +
Sbjct: 642 CALIDMYAKCGCMEQSQNIFDRVNEKDEAV 671
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 159/332 (47%), Gaps = 36/332 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +HA K SD +VGN+LI YG+ A +F+ M R++ SWN++M +
Sbjct: 213 LGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACS 272
Query: 61 DFSDSGEVLILFKQLIF---EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ GE +FK+L+ EG+V D T+V + ACA + ++ G VH A K+G+
Sbjct: 273 ENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITE 332
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + N+L+ MY+KC + EA LFD M +N+VS N +I GY
Sbjct: 333 EVTVNNSLVDMYSKCGYLGEARALFD-MNGGKNVVSWNTIIWGY---------------- 375
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMI-DEGVTPDEEVMVSVLSACSSLSNLQYG 236
K EL ++M +E V +E +++VL ACS L
Sbjct: 376 ---------------SKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSL 420
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+ +H + ++ +D V A + Y+KC SL+ A F + K V +W +I A
Sbjct: 421 KEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQN 480
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
G ++L +F M G+ P+ T S+L AC
Sbjct: 481 GFPGKSLDLFLVMMDSGMDPDRFTIGSLLLAC 512
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 167/334 (50%), Gaps = 38/334 (11%)
Query: 1 MGKGLHAHVTKT-ALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+G+ +HA V+ + L +D+ + +I Y +D+R +FD +D+ +N L+S Y
Sbjct: 110 VGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGY 169
Query: 60 NDFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ + + + LF +L+ + D TL + ACA + + G+ VH A K G
Sbjct: 170 SRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSD 229
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ NAL+ MY KC ++ A++ VF+ +
Sbjct: 230 AFVGNALIAMYGKCGFVESAVK--------------------------------VFETMR 257
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMI---DEGVTPDEEVMVSVLSACSSLSNLQY 235
++++V W S+M+ C + E +FK+++ +EG+ PD MV+V+ AC+++ ++
Sbjct: 258 NRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRM 317
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G +VH + IT++ V +L+DMYSKCG L EA F K+VV+W T+I G +
Sbjct: 318 GMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSK 377
Query: 296 YGLGNEALRVFYQMER-KGIKPNEATFVSVLAAC 328
G + +M+R + ++ NE T ++VL AC
Sbjct: 378 EGDFRGVFELLQEMQREEKVRVNEVTVLNVLPAC 411
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 152/327 (46%), Gaps = 50/327 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + + L+ D ++G SL+ Y + + +++FDKM + + WN +++ ++
Sbjct: 521 GKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQ 580
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L F+Q++ GI +I + + AC+++ L GK VH +A K L +
Sbjct: 581 NELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFV 640
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYAKC M+++ +FD + + V N++I GY
Sbjct: 641 TCALIDMYAKCGCMEQSQNIFDRVNEKDEAV-WNVIIAGY-------------------- 679
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS----NLQY-G 236
+HG +A+ELF+ M ++G PD + VL AC+ L+Y G
Sbjct: 680 ------GIHG-----HGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLG 728
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK-TDCKDVVTWTTMIEGLAN 295
++ + + ++ + A V +DM + G L EAL + D D W++++ N
Sbjct: 729 QMQNLYGVKPKLEHYACV----VDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRN 784
Query: 296 YG---LGNEALRVFYQMERKGIKPNEA 319
YG +G E + ++E PN+A
Sbjct: 785 YGDLEIGEEVSKKLLELE-----PNKA 806
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 140/317 (44%), Gaps = 43/317 (13%)
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKV-GLEYMLNMENALLLMYAKCKEMDEALRLF 142
K + IL AC + +H G+ VH + L + + ++ MY+ C ++
Sbjct: 92 KEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDS---- 147
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
R VFD +KD+ L+ +++ G + +A+
Sbjct: 148 ----------------------------RGVFDAAKEKDLFLYNALLSGYSRNALFRDAI 179
Query: 203 ELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
LF +++ + PD + V AC+ +++++ G VH L+ DAFV ALI M
Sbjct: 180 SLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAM 239
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM---ERKGIKPNE 318
Y KCG +E A+ F +++V+W +++ + G E VF ++ E +G+ P+
Sbjct: 240 YGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDV 299
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEF 376
AT V+V+ AC G + G + G +++ T E V LVD+ S+ G L +A
Sbjct: 300 ATMVTVIPACAAVGEVRMGMVVH---GLAFKLGITEEVTVNNSLVDMYSKCGYLGEARAL 356
Query: 377 IKIMPAEDKFISYKALL 393
M +S+ ++
Sbjct: 357 FD-MNGGKNVVSWNTII 372
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 118/257 (45%), Gaps = 29/257 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H+ K L D +V +LI Y + ++ +FD++ +D WN +++ Y
Sbjct: 621 LGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYG 680
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR----LEKLHY-GKTVHCYATKVGL 115
+ + LF+ + +G D T + + AC E L Y G+ + Y K L
Sbjct: 681 IHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKL 740
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
E+ ++ M + ++ EAL+L +EM + + L++ + +++ EV
Sbjct: 741 EHYA----CVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSK 796
Query: 176 EIVD------KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
++++ ++ VL ++ G K +E ++ ++M + G+ D + CS
Sbjct: 797 KLLELEPNKAENYVLLSNLYAGLGKW---DEVRKVRQRMKENGLHKD--------AGCSW 845
Query: 230 LSNLQYGRLVHRFILQN 246
++ G +V+RF++ +
Sbjct: 846 ---IEIGGMVYRFLVSD 859
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 6/146 (4%)
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPD----EEVMVSVLSACSSLSNLQYGRLVHRFI- 243
+H + +AL L G +E + +L AC N+ GR VH +
Sbjct: 60 LHNLCDSGNLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVS 119
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ + D + T +I MYS CGS ++ F KD+ + ++ G + L +A+
Sbjct: 120 ASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAI 179
Query: 304 RVFYQ-MERKGIKPNEATFVSVLAAC 328
+F + + + P+ T V AC
Sbjct: 180 SLFLELLSATDLAPDNFTLPCVAKAC 205
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 154/469 (32%), Positives = 256/469 (54%), Gaps = 10/469 (2%)
Query: 3 KGLHAHVTKTAL-DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+H + K L + ++ +L+ YG + AR LFD+MP + + + + +
Sbjct: 30 SGIHCLLFKAGLLHAGAHLPTALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAV 89
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSAC----ARLEKLHYGKTVHCYATKVGLEY 117
+ + L LF+ +I +G + D + L ++ +AC + + G+ VH + G+E
Sbjct: 90 SGQAAQALDLFQDMIADGFMPDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEP 149
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + L+ +Y + EM A R+FD M ++ I + N +++ Y+ + ++ A +F +
Sbjct: 150 DVFVSTELIRVYGERGEMTVARRVFDSMPTKSTI-AWNTMVHQYVRNKDIEAAYRLFLAM 208
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG---VTPDEEVMVSVLSACSSLSNLQ 234
+D+V W +++ G + +EAL LF++M+ V P+ M +VLSAC+ L+
Sbjct: 209 PRRDVVSWNTVIAGYCLVGRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLE 268
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL 293
G VH +I +N + + + LIDMY+KCGS+++AL F K K D+ +WTT+I GL
Sbjct: 269 TGIWVHLYIDKNQMNDNGTLDRCLIDMYAKCGSIDKALQVFEKAPGKRDLYSWTTVICGL 328
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A +G N+ LR+F M+ G+ P++ TFV VL AC H GL+ EG F M YR+ P
Sbjct: 329 AMHGRANDVLRMFSMMQDSGMCPDDVTFVGVLNACAHGGLVDEGLHHFYSMQEKYRITPK 388
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
IEH+ C++DLL R G L +A I+ MP + + + A LSAC +S +LG+ A +
Sbjct: 389 IEHYGCMIDLLGRVGRLPEAYRMIQTMPMKPNMVIWGAFLSACKVHSSVELGEIAAAEVT 448
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+L A V++S+ YA W+ +A RR M LQ +K PG S + L
Sbjct: 449 RLDPDDPWARVMMSSMYAKAQDWSGLARERREMNSLQMKKTPGCSSVAL 497
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 126/306 (41%), Gaps = 68/306 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--------------- 46
G+ +HA + ++ D++V LI YG T AR +FD MP
Sbjct: 135 GRMVHAFIVACGIEPDVFVSTELIRVYGERGEMTVARRVFDSMPTKSTIAWNTMVHQYVR 194
Query: 47 ----------------RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG---IVADKITL 87
RDV SWNT+++ Y E L LF+Q++ + + T+
Sbjct: 195 NKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRCKEALGLFRQMVSPSSCTVHPNGPTM 254
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ SACA L G VH Y K + ++ L+ MYAKC +D+AL++F++
Sbjct: 255 STVLSACAGAGCLETGIWVHLYIDKNQMNDNGTLDRCLIDMYAKCGSIDKALQVFEKAPG 314
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
+R++ S +I G MHG + + L +F
Sbjct: 315 KRDLYSWTTVICGLA--------------------------MHG-----RANDVLRMFSM 343
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN--ITQDAFVKTALIDMYSKC 265
M D G+ PD+ V VL+AC+ + G L H + +Q IT +ID+ +
Sbjct: 344 MQDSGMCPDDVTFVGVLNACAHGGLVDEG-LHHFYSMQEKYRITPKIEHYGCMIDLLGRV 402
Query: 266 GSLEEA 271
G L EA
Sbjct: 403 GRLPEA 408
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 150/453 (33%), Positives = 241/453 (53%), Gaps = 9/453 (1%)
Query: 19 YVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE 78
++ +L+ Y + AR LFD+MP + + + + + + + +F ++ +
Sbjct: 47 HLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVAD 106
Query: 79 GIVADKITLVILFSAC----ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
G+ D + L + AC + + + GK +H G+E + + L+ +Y +C +
Sbjct: 107 GVFPDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGK 166
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+ + R+FD+M SR I + N +++ Y VD A E+F + +D+V W ++M G
Sbjct: 167 LAVSRRVFDDMPSRSTI-TWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCV 225
Query: 195 AKQPEEALELFKKMIDE---GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
A + EAL LF++M+ V P+ M ++L AC+ L+ G VH +I +N + D
Sbjct: 226 AGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDD 285
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQME 310
++ LIDMY KCGS++ AL F K K D+ +WTT+I GLA +G +ALR+F M+
Sbjct: 286 GYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQ 345
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370
GI P++ T V VL AC H GL+ EG F M +R+ P IEH+ C++DLL R G L
Sbjct: 346 DNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRL 405
Query: 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430
+A I+ MP + + + A LSAC + +LGK A + +L V+LS+ Y
Sbjct: 406 QEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMY 465
Query: 431 ALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A W +A RR M +Q +K PG S I+LK
Sbjct: 466 AKAQDWIGLARERREMNSMQVKKTPGCSSIELK 498
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 135/334 (40%), Gaps = 71/334 (21%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--------------- 46
GK +HA + + ++ D++V LI YG +R +FD MP
Sbjct: 135 GKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQYAR 194
Query: 47 ----------------RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVA---DKITL 87
RDV SWNT+M+ Y E L LF+Q++ A + T+
Sbjct: 195 HGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTM 254
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ ACA L G VH Y + + ++ L+ MY KC +D AL++F++
Sbjct: 255 STILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPR 314
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
+R++ S +I G MHG + +AL +F
Sbjct: 315 KRDLFSWTTVICGL--------------------------AMHG-----RATDALRMFDM 343
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN--ITQDAFVKTALIDMYSKC 265
M D G+ PD+ +V VL+AC+ + G L + + ++ IT +ID+ +
Sbjct: 344 MQDNGICPDDVTLVGVLNACAHGGLVDEG-LGYFYSMEAKFRITPKIEHYGCMIDLLGRV 402
Query: 266 GSLEEA--LVTFYKTDCKDVVTWTTMIEGLANYG 297
G L+EA ++ D + V W + +G
Sbjct: 403 GRLQEAYSMIRTMPMD-PNTVIWGAFLSACKVHG 435
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 28/204 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLMSIYN 60
G +HA++ + ++ D Y+ LI Y + +A +F+K P RD+ SW T++
Sbjct: 270 GIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLA 329
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + L +F + GI D +TLV + +ACA H GL Y +
Sbjct: 330 MHGRATDALRMFDMMQDNGICPDDVTLVGVLNACA-----------HGGLVDEGLGYFYS 378
Query: 121 ME------------NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDME 165
ME ++ + + + EA + M N V ++ + +ME
Sbjct: 379 MEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNME 438
Query: 166 LVDLAREVFDEIVDKDIVLWRSMM 189
L +A E + D D R M+
Sbjct: 439 LGKIAAEELTRL-DPDDPWGRVML 461
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 162/451 (35%), Positives = 244/451 (54%), Gaps = 11/451 (2%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
D D+ N L+ + R DAR LFDKMP RD SWNT++S Y G L ++
Sbjct: 201 DWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYA----QGGGLSQARR 256
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLNMENALLLMYAKCK 133
L E D T + S + L KT K + Y NA++ Y + K
Sbjct: 257 LFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSY-----NAMIAGYVQTK 311
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
+MD A LF+ M R NI S N +I GY + + AR+ FD + +D V W +++ G
Sbjct: 312 KMDIARELFESMPCR-NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYA 370
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
++ EEAL +F ++ +G + + LS C+ ++ L+ G+ +H ++ F
Sbjct: 371 QSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCF 430
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
V AL+ MY KCGS++EA TF + KDVV+W TM+ G A +G G +AL VF M+ G
Sbjct: 431 VGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAG 490
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
+KP+E T V VL+AC H+GL+ G + F M Y V PT +H+ C++DLL RAG L +A
Sbjct: 491 VKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEA 550
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE 433
++ I+ MP + S+ ALL A + +LG+K A + K+ Q+ YVLLSN YA
Sbjct: 551 QDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAAS 610
Query: 434 GHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
G W + + R M+++ +K PG S +++++
Sbjct: 611 GRWVDADKMRSKMRDIGVQKVPGYSWVEVQN 641
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 154/343 (44%), Gaps = 34/343 (9%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N++I Y R + F AR LFD+MP RD+ SWN +++ Y G+ LF L+ E V
Sbjct: 84 NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLF-DLMPEKDV 142
Query: 82 ADKITLVILFSACARLEK-----------------------LHYGKTVH-CYATKVGLEY 117
+L+ ++ +++ +H G+ C + ++
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDW 202
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L N L+ + + K++ +A LFD+M R+ +S N +I+GY + AR +FDE
Sbjct: 203 DLISWNCLMGGFVRKKKLGDARWLFDKM-PVRDAISWNTMISGYAQGGGLSQARRLFDES 261
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+D+ W +M+ G V+ +EA F +M ++ +E ++++ + R
Sbjct: 262 PTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKMDIAR 317
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+ + NI+ +I Y + G + +A F +D V+W +I G A G
Sbjct: 318 ELFESMPCRNISS----WNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSG 373
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
EAL +F ++++ G N ATF L+ C + G Q+
Sbjct: 374 HYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQI 416
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 158/383 (41%), Gaps = 62/383 (16%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
D DI N I + R A +F+ MP R S+N ++S Y S LF
Sbjct: 46 DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF-- 103
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
D++ LFS N +L Y +
Sbjct: 104 --------DQMPERDLFSW-----------------------------NVMLTGYVRNCR 126
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+ +A RLFD M +++VS N L++GY VD AREVFD + +K+ + W ++ V
Sbjct: 127 LGDARRLFDLM-PEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVH 185
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+ EEA LF+ D + +M + L + R++ +DA
Sbjct: 186 NGRIEEACLLFESKSDWDLISWNCLMGGFVRK-KKLGDA-------RWLFDKMPVRDAIS 237
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
+I Y++ G L +A F ++ +DV TWT M+ G G+ +EA F +M K
Sbjct: 238 WNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK-- 295
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP--TIEHFVCLVDLLSRAGLLYQ 372
NE ++ +++A + + +LF M P I + ++ + G + Q
Sbjct: 296 --NEVSYNAMIAGYVQTKKMDIARELFESM-------PCRNISSWNTMITGYGQIGDIAQ 346
Query: 373 AEEFIKIMPAEDKFISYKALLSA 395
A +F +MP D +S+ A+++
Sbjct: 347 ARKFFDMMPQRD-CVSWAAIIAG 368
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 25/293 (8%)
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N + + + D AL +F+ M RR+ VS N +I+GY+ +LAR +FD++ ++D+
Sbjct: 53 NKAISTHMRNGHCDSALHVFNTM-PRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDL 111
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W M+ G V+ + +A LF M P+++V VS S S + Y R
Sbjct: 112 FSWNVMLTGYVRNCRLGDARRLFDLM------PEKDV-VSWNSLLSGYAQNGYVDEA-RE 163
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+ N +++ L+ Y G +EEA + F D+++W ++ G +A
Sbjct: 164 VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDA 223
Query: 303 LRVFYQME-RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF--VC 359
+F +M R I N T +S A G +++ +LF PT + F
Sbjct: 224 RWLFDKMPVRDAISWN--TMISGYA---QGGGLSQARRLFDE-------SPTRDVFTWTA 271
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
+V + G+L +A+ F MP +++ +SY A+++ + + D+ +++ +M
Sbjct: 272 MVSGYVQNGMLDEAKTFFDEMPEKNE-VSYNAMIAGYVQTKKMDIARELFESM 323
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H K + +VGN+L+ Y + +A F+ + +DV SWNT+++ Y
Sbjct: 412 LGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYA 471
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG 103
+ L +F+ + G+ D+IT+V + SAC+ L G
Sbjct: 472 RHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRG 514
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 156/398 (39%), Positives = 232/398 (58%), Gaps = 7/398 (1%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
+ +L+ QL+ I ++ T + +C+ GK +H + K GL + L+
Sbjct: 111 QAFLLYVQLLSSQINPNEFTFSSILKSCSTKS----GKLIHTHVLKFGLGLDPYVATGLV 166
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
+YAK ++ A ++FD M R++VS +I Y V+ AR +FD + ++DIV W
Sbjct: 167 DIYAKGGDVVSAQKVFDRM-PERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWN 225
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
M+ G + P +AL LF+K++ +G PDE +V+ LSACS + L+ GR +H F+
Sbjct: 226 VMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNS 285
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
+ I + V TALIDMYSKCGSLEEA++ F T KD+V W MI G A +G +ALR+
Sbjct: 286 SRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRL 345
Query: 306 FYQMER-KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
F +M+ G++P + TF+ L AC H+GL+ EG Q+F MG Y ++P IEH+ CLV LL
Sbjct: 346 FDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLL 405
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
RAG L +A E IK M E + + ++L +C + EF LGK++A ++ + YV
Sbjct: 406 GRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYV 465
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
LLSN YAL G + VA+ R MKE K+PG S I++
Sbjct: 466 LLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEI 503
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 123/270 (45%), Gaps = 42/270 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP---------------- 45
GK +H HV K L D YV L+ Y + A+ +FD+MP
Sbjct: 143 GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAK 202
Query: 46 ---------------FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG-IVADKITLVI 89
RD+ SWN ++ Y+ + L+LF++L+ +G D+IT+V
Sbjct: 203 QGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVA 262
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
SAC+++ L G+ +H + + + + AL+ MY+KC ++EA+ +F++ R+
Sbjct: 263 ALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDT-PRK 321
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEI-----VDKDIVLWRSMMHGCVKAKQPEEALEL 204
+IV+ N +I GY A +FDE+ + + + + C A E +++
Sbjct: 322 DIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQI 381
Query: 205 FKKMIDE-GVTPDEE---VMVSVLSACSSL 230
F+ M E G+ P E +VS+L L
Sbjct: 382 FESMGQEYGIKPKIEHYGCLVSLLGRAGQL 411
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 122/255 (47%), Gaps = 38/255 (14%)
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
+F + +D D+ L+ + ++ ++A L+ +++ + P+E S+L +CS+ S
Sbjct: 84 LFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKS- 142
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL-----------------EEALVTF 275
G+L+H +L+ + D +V T L+D+Y+K G + A++T
Sbjct: 143 ---GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITC 199
Query: 276 YKTD-------------C-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEAT 320
Y C +D+V+W MI+G + +G ++AL +F ++ G KP+E T
Sbjct: 200 YAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEIT 259
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
V+ L+AC G + G + R++ ++ L+D+ S+ G L +A
Sbjct: 260 VVAALSACSQIGALETG-RWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDT 318
Query: 381 PAEDKFISYKALLSA 395
P +D +++ A+++
Sbjct: 319 PRKD-IVAWNAMITG 332
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 15/184 (8%)
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI---TQDAFVKTALIDMYSKCGSLEEA 271
P E++ V + ++ S LQ +H IL++N+ + + L Y+ G + +
Sbjct: 26 PPEKLAVFIDNSHSVDEVLQ----IHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHS 81
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR-H 330
L F++T D+ +T I + GL ++A ++ Q+ I PNE TF S+L +C
Sbjct: 82 LALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTK 141
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
SG + L +G + P + LVD+ ++ G + A++ MP E +S
Sbjct: 142 SGKLIHTHVLKFGLG----LDPYVA--TGLVDIYAKGGDVVSAQKVFDRMP-ERSLVSST 194
Query: 391 ALLS 394
A+++
Sbjct: 195 AMIT 198
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 160/471 (33%), Positives = 246/471 (52%), Gaps = 41/471 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ H ++D++V ++LI Y + DAR LFD++P R+V SW ++++ Y
Sbjct: 1161 GRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQ 1220
Query: 62 FSDSGEVLILFKQLIFE--------GIVADKITLVILFSACARLEKLHYGKTVHCYATKV 113
+ L+LFK + E + D + +V + SAC+R+ + VH + K
Sbjct: 1221 NEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKK 1280
Query: 114 GLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
G + + + N L+ YAKC + LV +++V
Sbjct: 1281 GFDGSIGVGNTLMDAYAKCGQ------------------------------PLV--SKKV 1308
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSN 232
FD + +KD + W SM+ ++ EALE+F M+ GV + + +VL AC+
Sbjct: 1309 FDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGA 1368
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L+ G+ +H +++ ++ + V T++IDMY KCG +E A TF + K+V +WT M+ G
Sbjct: 1369 LRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAG 1428
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
+G EAL +FY+M R G+KPN TFVSVLAAC H+GL+ EG F M Y ++P
Sbjct: 1429 YGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEP 1488
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
IEH+ C+VDL RAG L +A IK M + F+ + +LL AC + DLG+ A +
Sbjct: 1489 GIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKL 1548
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+L + YVLLSN YA G W +V R MK Q K PG S+++LK
Sbjct: 1549 FELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELK 1599
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 137/371 (36%), Positives = 212/371 (57%), Gaps = 1/371 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +HA + ++ L +D + LIH Y A +LF ++ +WN ++
Sbjct: 44 RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
S + L+L+K ++ +GI ADK T + AC + GK VH K G + ++
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N L+ Y KC AL++F++M RN+VS +I+G I + AR +FDEI K++
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKM-RVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV 222
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +M++G ++ +QPEEALELFK+M E + P+E MVS++ AC+ + L GR +H +
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
++N I ++ TALIDMYSKCGS+++A+ F K + TW +MI L +GLG EA
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEA 342
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F +MER +KP+ TF+ VL AC H + EGC F RM Y + P EH+ C+ +
Sbjct: 343 LNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTE 402
Query: 363 LLSRAGLLYQA 373
L +R+ L +A
Sbjct: 403 LYARSNNLDEA 413
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 169/355 (47%), Gaps = 39/355 (10%)
Query: 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH 107
+V SWN++++ DS E L F L G++ + + +C+ L L G+ H
Sbjct: 1106 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 1165
Query: 108 CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
A G E L + +AL+ MY+KC ++ +A LFDE+ RN+VS +I GY+ E
Sbjct: 1166 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEI-PLRNVVSWTSMITGYVQNEQA 1224
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG--VTPDEEVMVSVLS 225
D A +F + + EE E +++G V D VMVSVLS
Sbjct: 1225 DNALLLFKDFL--------------------EEETE-----VEDGNNVPLDSVVMVSVLS 1259
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
ACS +S VH F+++ V L+D Y+KCG + F + KD ++
Sbjct: 1260 ACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDIS 1319
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
W +MI A GL EAL VF+ M R G++ N T +VL AC H+G + G + ++
Sbjct: 1320 WNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQV 1379
Query: 345 GGVYRVQPTIEHFVC----LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
++ +E+ VC ++D+ + G + A++ M E S+ A+++
Sbjct: 1380 -----IKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRM-KEKNVKSWTAMVAG 1428
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 40/260 (15%)
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
LI+ Y + A +F +I + W ++ E+AL L+K M+ +G+ D
Sbjct: 65 LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
+ V+ AC++ ++ G++VH +++ + D FV+ LID Y KCG AL F
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184
Query: 277 KTDCKDVVTWTTMIEGLANYG-------------------------------LGNEALRV 305
K ++VV+WTT+I GL + G EAL +
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLV 361
F +M+ + I PNE T VS++ AC G++T G R Y ++ IE V L+
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLG-----RGIHDYAIKNCIEIGVYLGTALI 299
Query: 362 DLLSRAGLLYQAEEFIKIMP 381
D+ S+ G + A E + MP
Sbjct: 300 DMYSKCGSIKDAIEVFETMP 319
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 125/304 (41%), Gaps = 64/304 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFY-----GRMAL---------------------- 33
+GK +H + K D++V N+LI FY R AL
Sbjct: 143 LGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLI 202
Query: 34 ----FTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
+AR +FD++P ++V SW +++ Y E L LFK++ E I ++ T+V
Sbjct: 203 SCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVS 262
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L AC + L G+ +H YA K +E + + AL+ MY+KC + +A+
Sbjct: 263 LIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAI---------- 312
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
EVF+ + K + W SM+ +EAL LF +M
Sbjct: 313 ----------------------EVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEME 350
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
V PD + VL AC + N++ G R I + ++Y++ +L
Sbjct: 351 RVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNL 410
Query: 269 EEAL 272
+EA
Sbjct: 411 DEAF 414
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 21/205 (10%)
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
SRR VSL+ +LA + + ++ W S++ + EAL F
Sbjct: 1083 SRRRPVSLS-----------SNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFS 1131
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
+ G+ P + +CS+L +L GR+ H+ D FV +ALIDMYSKCG
Sbjct: 1132 SLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCG 1191
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM--------ERKGIKPNE 318
L++A F + ++VV+WT+MI G + AL +F + + +
Sbjct: 1192 QLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDS 1251
Query: 319 ATFVSVLAAC-RHSGL-ITEGCQLF 341
VSVL+AC R SG ITEG F
Sbjct: 1252 VVMVSVLSACSRVSGKGITEGVHGF 1276
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 75/155 (48%), Gaps = 1/155 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+G+H + K ++ +Y+G +LI Y + DA +F+ MP + + +WN++++
Sbjct: 275 LGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLG 334
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYML 119
E L LF ++ + D IT + + AC ++ + G T+ G+ +
Sbjct: 335 VHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIP 394
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSL 154
+ +YA+ +DEA + E+GS N S+
Sbjct: 395 EHYECMTELYARSNNLDEAFKSTKEVGSLANSPSI 429
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
N ++ R +H I+++ ++ D + LI +YS G + A++ FY+ TW +I
Sbjct: 39 NFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIR 98
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
GL +AL ++ M +GI ++ TF V+ AC
Sbjct: 99 ANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKAC 135
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 148/464 (31%), Positives = 248/464 (53%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H V K+ ++YV + LI Y + AR + ++ DV SW +++ Y
Sbjct: 433 LGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYT 492
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF+++ +GI +D I SACA ++ L+ G+ +H + G L+
Sbjct: 493 QHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLS 552
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ +YA+C +A F+++ ++ NI
Sbjct: 553 IGNALVSLYARCGRAQDAYLAFEKIDAKDNIS---------------------------- 584
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
W +++ G ++ EEAL++F +M GV + S +SA ++ +N++ G+ +H
Sbjct: 585 ----WNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIH 640
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + LI +YSKCGS+E+A F++ K+VV+W MI G + +G G+
Sbjct: 641 AMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGS 700
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EA+ +F +M++ G+ PN TFV VL+AC H GL+ EG FR M + + P EH+VC+
Sbjct: 701 EAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCV 760
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RA LL A EFI+ MP E + ++ LLSAC + ++G+ A ++++L +
Sbjct: 761 VDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDS 820
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVLLSN YA+ G W R+ MK+ +K+PG S I++K+
Sbjct: 821 ATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKN 864
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 200/418 (47%), Gaps = 38/418 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH + K L S+ +V N+L+ Y R A +F KM RD S+N+L+S
Sbjct: 231 LGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLA 290
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S L LF+++ + + D +T+ L SACA + + GK +H Y K+G+ L
Sbjct: 291 QRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLI 350
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+E +LL +Y KC FD ++ A E F +
Sbjct: 351 IEGSLLDLYVKC---------FD-----------------------IETAHEYFLTTETE 378
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++VLW M+ + E+ +F +M EG+ P++ S+L C+SL L G +H
Sbjct: 379 NVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIH 438
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++++ + +V + LIDMY+K G L+ A + +DVV+WT MI G + L
Sbjct: 439 TQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFA 498
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR--MGGVYRVQPTIEHFV 358
EAL++F +ME +GI+ + F S ++AC + +G Q+ + + G Y +I +
Sbjct: 499 EALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISG-YSEDLSIGN-- 555
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
LV L +R G A + + A+D IS+ AL+S + +V + M + G
Sbjct: 556 ALVSLYARCGRAQDAYLAFEKIDAKDN-ISWNALISGFAQSGHCEEALQVFSQMNQAG 612
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 106/416 (25%), Positives = 201/416 (48%), Gaps = 41/416 (9%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + S V N LI Y + A+++F+++ +D SW ++S +
Sbjct: 134 IHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGR 193
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E ++LF Q+ ++ + SAC ++E G+ +H + K GL + NA
Sbjct: 194 EDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNA 253
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ +Y++ + A ++F +M RR+ +S N LI+G LA+ F +
Sbjct: 254 LVTLYSRWGNLIAAEQIFSKM-HRRDRISYNSLISG--------LAQRGFSD-------- 296
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
AL+LF+KM + + PD + S+LSAC+S+ G+ +H +++
Sbjct: 297 ---------------RALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVI 341
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ ++ D ++ +L+D+Y KC +E A F T+ ++VV W M+ G +E+
Sbjct: 342 KMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYW 401
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC--LVD 362
+F QM+ +G+ PN+ T+ S+L C G + G Q+ + V + +VC L+D
Sbjct: 402 IFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQ---VIKSGFQFNVYVCSVLID 458
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
+ ++ G L A ++ + ED +S+ A+++ Y++ DL + ++ NQ
Sbjct: 459 MYAKHGELDTARGILQRLREED-VVSWTAMIAG---YTQHDLFAEALKLFQEMENQ 510
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 128/488 (26%), Positives = 220/488 (45%), Gaps = 78/488 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LHA + K+ D + +G+ LI Y +A LFD +P +V WN ++S
Sbjct: 29 AKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLA 88
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE-KLHYGKTVHCYATKVGLEYMLN 120
+ +VL LF +I E + D+ T + AC+ + + +H G
Sbjct: 89 KKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPL 148
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N L+ +Y+K NG+ VDLA+ VF+ + K
Sbjct: 149 VCNPLIDLYSK---------------------------NGH-----VDLAKLVFERLFLK 176
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V W +M+ G + + +EA+ LF +M V P V SVLSAC+ + + G +H
Sbjct: 177 DSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLH 236
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
FI++ ++ + FV AL+ +YS+ G+L A F K +D +++ ++I GLA G +
Sbjct: 237 GFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSD 296
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMG------------ 345
AL++F +M+ +KP+ T S+L+AC G +G QL +MG
Sbjct: 297 RALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLL 356
Query: 346 ----GVYRVQPTIEHF-------VCLVDL----------LSRAGLLYQAEEFIKIMPAED 384
+ ++ E+F V L ++ LS + ++ + +MP +
Sbjct: 357 DLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQ- 415
Query: 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV--LLSNFYALEGHWTEVAEA 442
+Y ++L C + DLG+++ ++K G Q YV +L + YA G E+ A
Sbjct: 416 --YTYPSILRTCTSLGALDLGEQIHTQVIKSGFQ-FNVYVCSVLIDMYAKHG---ELDTA 469
Query: 443 RRNMKELQ 450
R ++ L+
Sbjct: 470 RGILQRLR 477
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 121/291 (41%), Gaps = 43/291 (14%)
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M + G+ + + + + C + +L + +H I ++ + + + LID+Y G
Sbjct: 1 MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
++ A+ F +V W +I GL L ++ L +F M + + P+E+TF SVL A
Sbjct: 61 VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120
Query: 328 CR------------HSGLITEG-------CQ----LFRRMGGVYRVQPTIEH-------- 356
C H+ +I G C L+ + G V + E
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180
Query: 357 FVCLVDLLSRAG------LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
+V ++ LS+ G LL+ ++P F S +LSAC F LG+++
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSS---VLSACTKIELFKLGEQLHG 237
Query: 411 NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPG-NSII 460
++K G S E +V + L W + A + ++ R + NS+I
Sbjct: 238 FIVKWG-LSSETFV-CNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLI 286
>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1047
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 148/464 (31%), Positives = 246/464 (53%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ + KT+ + YV + LI Y ++ A + + +DV SW T+++ Y
Sbjct: 491 LGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT 550
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ + L F+Q++ GI +D++ L SACA L+ L G+ +H A G L
Sbjct: 551 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 610
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+NAL+ +Y+KC ++EA F++ + NI
Sbjct: 611 FQNALVTLYSKCGNIEEAYLAFEQTEAGDNIA---------------------------- 642
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
W +++ G ++ EEAL +F +M EG+ + S + A S +N++ G+ VH
Sbjct: 643 ----WNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVH 698
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I + + V A+I MY+KCGS+ +A F + K+ V+W MI + +G G+
Sbjct: 699 AVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGS 758
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL F QM ++PN T V VL+AC H GL+ +G + F M Y + P EH+VC+
Sbjct: 759 EALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCV 818
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L+RAGLL +A++FI MP E + ++ LLSAC+ + ++G+ A+++++L +
Sbjct: 819 VDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDS 878
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVLLSN YA+ W R+ MKE +K+PG S I++K+
Sbjct: 879 ATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKN 922
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 187/395 (47%), Gaps = 34/395 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH V K SD YV N+L+ Y + A +F M RD ++NTL++ +
Sbjct: 289 IGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLS 348
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + LFK++ +G+ D TL L AC+ L G+ +H Y TK+G
Sbjct: 349 QCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDK 408
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+E ALL +YAKC +++ AL F E N+V N+++ Y L+D R F
Sbjct: 409 IEGALLNLYAKCSDIETALNYFLET-EVENVVLWNVMLVAY---GLLDDLRNSF------ 458
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+F++M E + P++ S+L C L +L+ G +H
Sbjct: 459 ----------------------RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIH 496
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I++ + +A+V + LIDMY+K G L+ A + KDVV+WTTMI G Y +
Sbjct: 497 SQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDD 556
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL F QM +GI+ +E + ++AC + EG Q+ + V + L
Sbjct: 557 KALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQ-ACVSGFSSDLPFQNAL 615
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
V L S+ G + +A + A D I++ AL+S
Sbjct: 616 VTLYSKCGNIEEAYLAFEQTEAGDN-IAWNALVSG 649
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 120/471 (25%), Positives = 210/471 (44%), Gaps = 73/471 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH+ + K D++ + L+ FY A +FD+MP R + +WN ++
Sbjct: 87 GRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELAS 146
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S SG+V LF +++ E + ++ T + AC V + +
Sbjct: 147 RSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACR--------------GGSVAFDVV--- 189
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
E A ++ +G ++ + N LI+ Y VD AR VFD + KD
Sbjct: 190 ------------EQIHARIIYQGLG--KSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKD 235
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
W +M+ G K + EA+ LF M G+ P SVLSAC + +L+ G +H
Sbjct: 236 HSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHG 295
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+L+ + D +V AL+ +Y GSL A F +D VT+ T+I GL+ G G +
Sbjct: 296 LVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEK 355
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR-----------RMGGV--- 347
A+ +F +M+ G++P+ T S++ AC G + G QL ++ G
Sbjct: 356 AMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLN 415
Query: 348 -------------YRVQPTIEHFVC---------LVDLLSRAGLLYQAEEFIKIMPAEDK 385
Y ++ +E+ V L+D L + +++ + +I+P +
Sbjct: 416 LYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ-- 473
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV--LLSNFYALEG 434
+Y ++L CI + +LG+++ + ++K Q + AYV +L + YA G
Sbjct: 474 -YTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLN-AYVCSVLIDMYAKLG 522
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/422 (25%), Positives = 193/422 (45%), Gaps = 44/422 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + L V N LI Y R AR +FD + +D SW ++S +
Sbjct: 192 IHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNEC 251
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E + LF + GI+ + SAC ++E L G+ +H K+G + NA
Sbjct: 252 EVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNA 311
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ +Y L LI+ A +F + +D V
Sbjct: 312 LVSLY----------------------FHLGSLIS----------AEHIFSNMSQRDAVT 339
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
+ ++++G + E+A+ELFK+M +G+ PD + S++ ACSS L G+ +H +
Sbjct: 340 YNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTT 399
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE--- 301
+ + ++ AL+++Y+KC +E AL F +T+ ++VV W M L YGL ++
Sbjct: 400 KLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVM---LVAYGLLDDLRN 456
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC-- 359
+ R+F QM+ + I PN+ T+ S+L C G + G Q+ + + + + +VC
Sbjct: 457 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ---IIKTSFQLNAYVCSV 513
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
L+D+ ++ G L A + + +D +S+ +++ Y+ D M+ G +S
Sbjct: 514 LIDMYAKLGKLDTAWDILIRFAGKD-VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 572
Query: 420 HE 421
E
Sbjct: 573 DE 574
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 112/251 (44%), Gaps = 42/251 (16%)
Query: 212 GVTPDEEVMVSVLSAC-SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ P+ + + +L C + +L GR +H IL+ +A + L+D Y G L+
Sbjct: 62 GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR- 329
AL F + + + TW MI+ LA+ L + +F +M + + PNE TF VL ACR
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRG 181
Query: 330 -----------HSGLITEG-------CQ----LFRRMGGVYRVQPTIE--------HFVC 359
H+ +I +G C L+ R G V R + + +V
Sbjct: 182 GSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVA 241
Query: 360 LVDLLSR------AGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
++ LS+ A L+ + IMP F S +LSAC ++G+++ ++
Sbjct: 242 MISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSS---VLSACKKIESLEIGEQLHGLVL 298
Query: 414 KLGNQSHEAYV 424
KLG S + YV
Sbjct: 299 KLGFSS-DTYV 308
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 166/495 (33%), Positives = 265/495 (53%), Gaps = 44/495 (8%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYG--RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
LHA V ++ D YV +L+ Y + F A +F +P +V WN ++
Sbjct: 52 LHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIK----- 106
Query: 63 SDSGEVLILFKQLIFEGIV-----ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
E LFK + F G + +K T LF AC+ + + G+ +H + K G+
Sbjct: 107 -GCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGS 165
Query: 118 MLNMENALLLMYA------------------------------KCKEMDEALRLFDEMGS 147
+++++A + MYA KC ++ A LF +M
Sbjct: 166 DVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQM-P 224
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
+NI S N++ING + AR++FDE+ ++D + W SM+ G + A + +EALE+F++
Sbjct: 225 VKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQ 284
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M E P ++ SVL+ACS++ + GR VH ++ +N+I DA + TAL+DMY+KCG
Sbjct: 285 MQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGR 344
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
L+ F + +++ TW MI GLA +G +AL +F +++ +KPN T V VL A
Sbjct: 345 LDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTA 404
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C H+G + +G ++F+ M Y V P +EH+ C+VDLL R+GL +AE+ I MP +
Sbjct: 405 CAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAA 464
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
+ ALL AC + FDL ++V +++L Q+ YVLLSN YA G + +V++ R+ MK
Sbjct: 465 VWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMK 524
Query: 448 ELQTRKKPGNSIIDL 462
+ PG SI+DL
Sbjct: 525 NRGIKTVPGVSIVDL 539
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/406 (23%), Positives = 166/406 (40%), Gaps = 76/406 (18%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
KGL A + + S N +I+ + DAR LFD+M RD SW++++ Y
Sbjct: 217 KGLFAQMPVKNIGS----WNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISA 272
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
E L +F+Q+ E + L + +AC+ + + G+ VH Y + ++ +
Sbjct: 273 GRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLG 332
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
ALL MYAKC +D +F+EM R +I
Sbjct: 333 TALLDMYAKCGRLDMGWEVFEEMKER--------------------------------EI 360
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W +M+ G + E+ALELF K+ + + P+ +V VL+AC+
Sbjct: 361 FTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACA-------------- 406
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
FV L + + + FY D ++ + M++ L GL +EA
Sbjct: 407 -------HAGFVDKGL--------RIFQTMREFYGVD-PELEHYGCMVDLLGRSGLFSEA 450
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV-YRVQPTIE-HFVCL 360
+ M +KPN A + ++L ACR G L R+G + ++P +V L
Sbjct: 451 EDLINSMP---MKPNAAVWGALLGACRIHG----NFDLAERVGKILLELEPQNSGRYVLL 503
Query: 361 VDLLSRAGLLYQAEEFIKIMPAED-KFISYKALLSACITYSEFDLG 405
++ ++ G + K+M K + +++ T EF +G
Sbjct: 504 SNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMG 549
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 49/94 (52%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA++ + ++ D +G +L+ Y + +F++M R++ +WN ++
Sbjct: 313 GRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAI 372
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
+ + L LF +L + + ITLV + +ACA
Sbjct: 373 HGRAEDALELFSKLQEGRMKPNGITLVGVLTACA 406
>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
Length = 695
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 160/481 (33%), Positives = 256/481 (53%), Gaps = 36/481 (7%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D + N+++ Y + L D RV+FD MP RD S+NT++S + G L +F ++
Sbjct: 88 DNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQ 147
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
EG+ + T V + +AC +L L GK +H L + + NAL +YA+C E+D
Sbjct: 148 KEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEID 207
Query: 137 EALRLFDEMGSRRNIVSLNILINGYI-------------DMEL----------------- 166
+A RLFD M RN+V+ N++I+GY+ +M++
Sbjct: 208 QARRLFDRM-VIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAY 266
Query: 167 -----VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMV 221
+D AR+VF EI +KD V W M+ GC + + E+AL LF +M+ E PD +
Sbjct: 267 IQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTIS 326
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK 281
SV+S+C+ L++L +G++VH + D V +AL+DMY KCG +A F +
Sbjct: 327 SVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTR 386
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
+VV+W +MI G A G EAL ++ M + +KP+ TFV VL+AC H+GL+ EG + F
Sbjct: 387 NVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYF 446
Query: 342 RRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
M + ++PT +H+ C+V+L R+G + +A + I M E + + +LS C+ +
Sbjct: 447 CSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGD 506
Query: 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
G+ A +++L + Y++LSN YA G W +VA R MK +K S I+
Sbjct: 507 IKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIE 566
Query: 462 L 462
+
Sbjct: 567 I 567
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 1/221 (0%)
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N LL +YAK E+ A +LFDEM R N S N +++ Y LV+ R +FD + +
Sbjct: 60 IHNRLLNLYAKSGEISHARKLFDEMTQRDNF-SWNAMLSLYAKSGLVEDLRVIFDNMPSR 118
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V + +++ G + AL +F +M EG+ P E VSVL+AC+ L +L+ G+ +H
Sbjct: 119 DSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIH 178
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I+ N+ + FV AL D+Y++CG +++A F + ++VVTW MI G
Sbjct: 179 GRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPE 238
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
+ + +F++M+ +KP++ T SVL A +G I E ++F
Sbjct: 239 KCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVF 279
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 150/447 (33%), Positives = 250/447 (55%), Gaps = 5/447 (1%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
++I Y R AR D M + V +WN ++S Y E L +F+++ GI
Sbjct: 229 TTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQ 288
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCY----ATKVGLEYMLNMENALLLMYAKCKEMDE 137
D+ T + SACA +GK VH Y + L++ L++ NAL +Y KC ++DE
Sbjct: 289 WDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDE 348
Query: 138 ALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ 197
A ++F++M +++VS N +++GY++ +D A+ F+E+ +++++ W M+ G +
Sbjct: 349 ARQVFNQM-PVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGF 407
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
EE+L+LF +M EG P + + AC+ L+ L +GR +H +++ A
Sbjct: 408 GEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNA 467
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LI MY+KCG +E A F D V+W MI L +G G +AL +F M ++ I P+
Sbjct: 468 LITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPD 527
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI 377
TF++VL+ C H+GL+ EG + F+ M G+Y + P +H+ ++DLL RAG +A++ I
Sbjct: 528 RITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMI 587
Query: 378 KIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWT 437
+ MP E ++ALL+ C + DLG + A + +L Q YVLLSN YA G W
Sbjct: 588 ETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWD 647
Query: 438 EVAEARRNMKELQTRKKPGNSIIDLKH 464
+VA+ R+ M++ +K+PG S I++++
Sbjct: 648 DVAKVRKLMRDKGVKKEPGCSWIEVEN 674
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 125/476 (26%), Positives = 207/476 (43%), Gaps = 87/476 (18%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDK----------------- 43
+ + +HAH+ + Y+ N LI Y + + A LFD+
Sbjct: 33 IARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHS 92
Query: 44 ----------------MPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87
+ RD +N +++ Y+ +D + LF+ L+ G D T
Sbjct: 93 SAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTF 152
Query: 88 VILFSACARL-EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE---------MDE 137
+ A A + E + +HC K G ++ ++ NALL ++ KC M
Sbjct: 153 TSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAA 212
Query: 138 ALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ 197
A +LFDEM + R+ +S +I GY+ +D AR+ D + +K +V W +M+ G V
Sbjct: 213 ARKLFDEM-TERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGF 271
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN----NITQDAF 253
EALE+F+KM G+ DE SVLSAC++ +G+ VH +IL+ ++
Sbjct: 272 FLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLS 331
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVV----------------------------- 284
V AL +Y KCG ++EA F + KD+V
Sbjct: 332 VNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERN 391
Query: 285 --TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
TWT MI GLA G G E+L++F +M+ +G +P + F + AC + G QL
Sbjct: 392 LLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHA 451
Query: 343 ---RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
R+G ++ L+ + ++ G++ A MP D +S+ A+++A
Sbjct: 452 QLVRLG----FDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDS-VSWNAMIAA 502
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 15/142 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHA + + DS + GN+LI Y + + A LF MP+ D SWN +++
Sbjct: 446 GRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQ 505
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L LF+ ++ E I+ D+IT + + S C+ H + G Y +M
Sbjct: 506 HGHGAQALELFELMLKEDILPDRITFLTVLSTCS-----------HAGLVEEGHRYFKSM 554
Query: 122 ENALLLMYAKCKEMDEALRLFD 143
+Y C D R+ D
Sbjct: 555 SG----LYGICPGEDHYARMID 572
>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Vitis vinifera]
Length = 610
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 155/464 (33%), Positives = 260/464 (56%), Gaps = 3/464 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH H+ KT +D + N+LI+ YG+ L DA LF+++P RD SW ++++ N
Sbjct: 21 IGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANN 80
Query: 61 DFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ L +F + + G+ D L ACA L + GK VH +
Sbjct: 81 QANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDD 140
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++++L+ MYAKC D +FD + S+ N +S +I+GY A ++F ++
Sbjct: 141 VVKSSLVDMYAKCGLPDIGRVVFDSISSK-NSISWTAMISGYAQSGRKLDAIQLFQKMPV 199
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSNLQYGRL 238
K+++ W +++ G V++ ++ LF +M +G+ D ++ S++ A ++L+ L G+
Sbjct: 200 KNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQ 259
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++ FV AL+DMY+KC + A F + +D+V+WT++I G A +GL
Sbjct: 260 IHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGL 319
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EAL ++ +M G+KPNE TFV ++ AC H GL+++G F M Y + P+++H+
Sbjct: 320 AEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYT 379
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
CL+DLLSR+G L +AE IK MP + ++ ALLSAC + +G +VA++++ L +
Sbjct: 380 CLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPE 439
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+LLSN YA W V++ RR M ++ +K+PG S I L
Sbjct: 440 DPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVL 483
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 147/332 (44%), Gaps = 40/332 (12%)
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
LV ACAR + GK +HC+ K G++ ++ N L+ MY KC + +AL LF+++
Sbjct: 6 LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLP 65
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
R D + W S++ +A P L +F
Sbjct: 66 HR--------------------------------DPISWASILTANNQANLPHLTLSMFP 93
Query: 207 KMI-DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
M +G+ PD V ++ AC+ L ++ G+ VH + + ++ D VK++L+DMY+KC
Sbjct: 94 AMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKC 153
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G + V F K+ ++WT MI G A G +A+++F +M K N ++ +++
Sbjct: 154 GLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVK----NLLSWTALI 209
Query: 326 AACRHSGLITEGCQLFRRM--GGVYRVQPTI-EHFVCLVDLLSRAGLLYQAEEFIKIMPA 382
+ SG + LF M G+ V P I + L+ GL Q + ++
Sbjct: 210 SGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGY 269
Query: 383 EDKFISYKALLSACITYSEFDLGKKVANNMMK 414
E AL+ S+ KK+ M++
Sbjct: 270 ESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQ 301
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 167/465 (35%), Positives = 258/465 (55%), Gaps = 6/465 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K HA + TAL S N L+ A + A LFD++P D+ +NT++ ++
Sbjct: 33 KQTHAQLITTALISHPVSANKLLKL-AACASLSYAHKLFDQIPQPDLFIYNTMIKAHSLS 91
Query: 63 SDS-GEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S LI+F+ L + G+ ++ + V FSAC + G+ V +A KVGLE +
Sbjct: 92 PHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAVKVGLENNVF 151
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MY K + E+ ++F + R++ S N LI Y+ + LA+E+FD + ++
Sbjct: 152 VVNALIGMYGKWGLVGESQKVF-QWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRER 210
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +++ G V+ EAL+ F KM+ G P+E +VS L+ACS+L L G+ +H
Sbjct: 211 DVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIH 270
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD-VVTWTTMIEGLANYGLG 299
+I + I + + ++IDMY+KCG +E A F++ K V W MI G A +G+
Sbjct: 271 AYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMP 330
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
NEA+ VF QM+ + I PN+ TF+++L AC H ++ EG FR M Y + P IEH+ C
Sbjct: 331 NEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGC 390
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLLSR+GLL +AE+ I MP + ALL+AC Y + + G ++ + +
Sbjct: 391 MVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNH 450
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK-PGNSIIDLK 463
+VLLSN Y+ G W E R + + RKK PG S I+LK
Sbjct: 451 IGCHVLLSNIYSTSGRWNEARILREKNEISRDRKKIPGCSSIELK 495
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 158/357 (44%), Gaps = 80/357 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ + H K L+++++V N+LI YG+ L +++ +F RD+ SWNTL++ Y
Sbjct: 134 GEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVG 193
Query: 62 FSDSG-------------------------------EVLILFKQLIFEGIVADKITLVIL 90
+ E L F +++ G ++ TLV
Sbjct: 194 SGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSA 253
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
+AC+ L L GK +H Y K ++ + +++ MYAKC E++ A R+F
Sbjct: 254 LAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVF-------- 305
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
F+ V + + LW +M+ G P EA+ +F++M
Sbjct: 306 -----------------------FEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKV 342
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLE 269
E ++P++ +++L+ACS ++ G+L R ++ + IT + ++D+ S+ G L+
Sbjct: 343 EKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLK 402
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER--------KGIKPNE 318
EA +D+++ M +A +G A R++ MER KG+ PN
Sbjct: 403 EA---------EDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNH 450
>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Glycine max]
Length = 611
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/465 (33%), Positives = 255/465 (54%), Gaps = 4/465 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K LHA + K L+ + N+L++ YG+ L DA LFD +P RD +W +L++ N
Sbjct: 21 LAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACN 80
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHY--GKTVHCYATKVGLEYM 118
+ L + + L+ G D L ACA L LH GK VH
Sbjct: 81 LSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDD 140
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++++L+ MYAK D +FD + S N +S +I+GY A +F +
Sbjct: 141 DVVKSSLIDMYAKFGLPDYGRAVFDSISSL-NSISWTTMISGYARSGRKFEAFRLFRQTP 199
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT-PDEEVMVSVLSACSSLSNLQYGR 237
+++ W +++ G V++ +A LF +M EG++ D V+ SV+ AC++L+ + G+
Sbjct: 200 YRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGK 259
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H ++ F+ ALIDMY+KC L A F + KDVV+WT++I G A +G
Sbjct: 260 QMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHG 319
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL ++ +M G+KPNE TFV ++ AC H+GL+++G LFR M + + P+++H+
Sbjct: 320 QAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHY 379
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
CL+DL SR+G L +AE I+ MP ++ ALLS+C + + ++A++++ L
Sbjct: 380 TCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKP 439
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ +Y+LLSN YA G W +V++ R+ M L+ +K PG S IDL
Sbjct: 440 EDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDL 484
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/451 (35%), Positives = 244/451 (54%), Gaps = 11/451 (2%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
D D+ N L+ + R DAR LFDKMP RD SWNT++S Y G L ++
Sbjct: 201 DWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYA----QGGGLSQARR 256
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLNMENALLLMYAKCK 133
L E D T + S + L KT K + Y NA++ Y + K
Sbjct: 257 LFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSY-----NAMIAGYVQTK 311
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
+MD A LF+ M R NI S N +I GY + + AR+ FD + +D V W +++ G
Sbjct: 312 KMDIARELFESMPCR-NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYA 370
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
++ EEAL +F ++ +G + + LS C+ ++ L+ G+ +H ++ F
Sbjct: 371 QSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCF 430
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
V AL+ MY KCGS++EA TF + KDVV+W TM+ G A +G G +AL VF M+ G
Sbjct: 431 VGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAG 490
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
+KP+E T V VL+AC H+GL+ G + F M Y V PT +H+ C++DLL RAG L +A
Sbjct: 491 VKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEA 550
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE 433
++ I+ MP + S+ ALL A + +LG+K A + K+ Q+ YVLLSN YA
Sbjct: 551 QDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAAS 610
Query: 434 GHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
G W + + R M+++ +K PG S +++++
Sbjct: 611 GRWVDADKMRSKMRDIGVQKVPGYSWVEVQN 641
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 154/343 (44%), Gaps = 34/343 (9%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N++I Y R + F AR LFD+MP RD+ SWN +++ Y G+ LF L+ E V
Sbjct: 84 NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLF-DLMPEKDV 142
Query: 82 ADKITLVILFSACARLEK-----------------------LHYGKTVH-CYATKVGLEY 117
+L+ ++ +++ +H G+ C + ++
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDW 202
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L N L+ + + K++ +A LFD+M R+ +S N +I+GY + AR +FDE
Sbjct: 203 DLISWNCLMGGFVRKKKLGDARWLFDKM-PVRDAISWNTMISGYAQGGGLSQARRLFDES 261
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+D+ W +M+ G V+ +EA F +M ++ +E ++++ + R
Sbjct: 262 PTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKMDIAR 317
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+ + NI+ +I Y + G + +A F +D V+W +I G A G
Sbjct: 318 ELFESMPCRNISS----WNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSG 373
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
EAL +F ++++ G N ATF L+ C + G Q+
Sbjct: 374 HYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQI 416
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 158/383 (41%), Gaps = 62/383 (16%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
D DI N I + R A +F+ MP R S+N ++S Y S LF
Sbjct: 46 DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF-- 103
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
D++ LFS N +L Y +
Sbjct: 104 --------DQMPERDLFSW-----------------------------NVMLTGYVRNCR 126
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+ +A RLFD M +++VS N L++GY VD AREVFD + +K+ + W ++ V
Sbjct: 127 LGDARRLFDLM-PEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVH 185
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+ EEA LF+ D + +M + L + R++ +DA
Sbjct: 186 NGRIEEACLLFESKSDWDLISWNCLMGGFVRK-KKLGDA-------RWLFDKMPVRDAIS 237
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
+I Y++ G L +A F ++ +DV TWT M+ G G+ +EA F +M K
Sbjct: 238 WNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK-- 295
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP--TIEHFVCLVDLLSRAGLLYQ 372
NE ++ +++A + + +LF M P I + ++ + G + Q
Sbjct: 296 --NEVSYNAMIAGYVQTKKMDIARELFESM-------PCRNISSWNTMITGYGQIGDIAQ 346
Query: 373 AEEFIKIMPAEDKFISYKALLSA 395
A +F +MP D +S+ A+++
Sbjct: 347 ARKFFDMMPQRD-CVSWAAIIAG 368
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 25/293 (8%)
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N + + + D AL +F+ M RR+ VS N +I+GY+ +LAR +FD++ ++D+
Sbjct: 53 NKAISTHMRNGHCDSALHVFNTM-PRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDL 111
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W M+ G V+ + +A LF M P+++V VS S S + Y R
Sbjct: 112 FSWNVMLTGYVRNCRLGDARRLFDLM------PEKDV-VSWNSLLSGYAQNGYVDEA-RE 163
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+ N +++ L+ Y G +EEA + F D+++W ++ G +A
Sbjct: 164 VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDA 223
Query: 303 LRVFYQME-RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF--VC 359
+F +M R I N T +S A G +++ +LF PT + F
Sbjct: 224 RWLFDKMPVRDAISWN--TMISGYA---QGGGLSQARRLFDE-------SPTRDVFTWTA 271
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
+V + G+L +A+ F MP +++ +SY A+++ + + D+ +++ +M
Sbjct: 272 MVSGYVQNGMLDEAKTFFDEMPEKNE-VSYNAMIAGYVQTKKMDIARELFESM 323
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H K + +VGN+L+ Y + +A F+ + +DV SWNT+++ Y
Sbjct: 412 LGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYA 471
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG 103
+ L +F+ + G+ D+IT+V + SAC+ L G
Sbjct: 472 RHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRG 514
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 17/90 (18%)
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
++GL+ G + F M Y V PT +H+ C++DLL R L +
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG---------------- 819
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQS 419
ALL A + +LG+K A K+G Q+
Sbjct: 820 -ALLGASRIHGNTELGEKAAQMFFKMGPQN 848
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/462 (33%), Positives = 261/462 (56%), Gaps = 1/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK + +T+ + S+ V N+L+ Y + R +FD+ +++ +NT+MS Y
Sbjct: 241 LGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYV 300
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+GEVL++ +++ +G DK+T++ +ACA+L L GK+ H Y + GLE + N
Sbjct: 301 QHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDN 360
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NA++ MY KC + + A ++FD M S + +V+ N LI G + ++LA +F E+ +
Sbjct: 361 ISNAIIDMYMKCGKREAACKVFDSM-SNKTVVTWNSLIAGLVRDGELELALRIFGEMPES 419
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++V W +M+ V+A EEA++L ++M ++G+ D MV + SAC L L + ++
Sbjct: 420 NLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIY 479
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I +N+I D + TAL+DM+S+CG A+ F + +DV WT I A G
Sbjct: 480 TYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAK 539
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ +F +M ++ +K ++ FV++L A H G + +G QLF M ++ V P I H+ C+
Sbjct: 540 GAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCM 599
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A + +K MP + + + + L+AC + + + +L +
Sbjct: 600 VDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKV 659
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+VLLSN YA G W +VA R MKE +K G+S I++
Sbjct: 660 GIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEV 701
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 171/343 (49%), Gaps = 36/343 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H V K L D++V NSLIHFY R +FD+M R+V SW +L++ Y+
Sbjct: 141 GVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSV 200
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + E + LF +++ G+ + +T+V SACA+L+ L GK V T++G++ +
Sbjct: 201 VNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLV 260
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL MY KC +M +FDE S +N+V N +++ Y+
Sbjct: 261 VNALLDMYMKCGDMYAVREIFDEF-SDKNLVMYNTIMSNYVQ------------------ 301
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
HG E L + +M+ +G PD+ M+S ++AC+ L +L G+ H
Sbjct: 302 --------HGLAG-----EVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHA 348
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ +N + + + A+IDMY KCG E A F K VVTW ++I GL G
Sbjct: 349 YVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELEL 408
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
ALR+F +M + N ++ +++ A + + E L R M
Sbjct: 409 ALRIFGEMP----ESNLVSWNTMIGAMVQASMFEEAIDLLREM 447
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 32/270 (11%)
Query: 68 VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLL 127
+ I +I GIV D T L SAC+++ G VH K+GL L + N+L+
Sbjct: 106 IFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIH 165
Query: 128 MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRS 187
YA C + VDL R+VFDE++++++V W S
Sbjct: 166 FYAACGK--------------------------------VDLGRKVFDEMLERNVVSWTS 193
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247
+++G +EA+ LF +M++ GV P+ MV +SAC+ L +L+ G+ V + +
Sbjct: 194 LINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELG 253
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
+ + V AL+DMY KCG + F + K++V + T++ +GL E L V
Sbjct: 254 VKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLD 313
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEG 337
+M +KG +P++ T +S +AAC G ++ G
Sbjct: 314 EMLQKGQRPDKVTMLSTIAACAQLGDLSVG 343
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 127/272 (46%), Gaps = 15/272 (5%)
Query: 132 CKEMDEALRLFDEMGSRRNIVSLNILINGYIDM---ELVDLAREVF--DEIVDKDIVLWR 186
CK + E +L M ++ + ++N LI + M E ++ A F DE +
Sbjct: 32 CKTLIELKQLHCNM-LKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCN 90
Query: 187 SMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+++ G + +EA+ ++ MI G+ PD +LSACS + G VH +++
Sbjct: 91 TLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVK 150
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
+ +D FV +LI Y+ CG ++ F + ++VV+WT++I G + + EA+ +
Sbjct: 151 MGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCL 210
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEG---CQLFRRMGGVYRVQPTIEHFVCLVD 362
F++M G++PN T V ++AC + G C L +G V+ L+D
Sbjct: 211 FFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELG----VKSNTLVVNALLD 266
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
+ + G +Y E ++ + Y ++S
Sbjct: 267 MYMKCGDMYAVREIFDEF-SDKNLVMYNTIMS 297
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/494 (31%), Positives = 257/494 (52%), Gaps = 65/494 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY---GRM-------------------ALFT---- 35
G+ +H HV K D D+YV SLI Y GR+ AL T
Sbjct: 84 GQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYAS 143
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+AR LFD++ +DV SWN ++S Y + + E L L+K ++ + D+ T+V +
Sbjct: 144 RGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTV 203
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+ + G+ +H + G + + N L+ +Y+KC E
Sbjct: 204 VSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGE---------------- 247
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
V+ A +F + KD++ W +++ G +EAL LF++M+
Sbjct: 248 ----------------VETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLR 291
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ--NNITQDAFVKTALIDMYSKCGSL 268
G +P++ M+SVL AC+ L + GR +H +I + +T + + T+LIDMY+KCG +
Sbjct: 292 SGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDI 351
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E A F + + +W MI G A +G N A +F +M + GI P++ TFV +L+AC
Sbjct: 352 EAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSAC 411
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
HSG++ G +FR M Y++ P +EH+ C++DLL GL +A+E I+ MP E +
Sbjct: 412 SHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVI 471
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+ +LL AC ++ +LG+ A N++K+ ++ +YVLLSN YA G W +VA+ R + +
Sbjct: 472 WCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLND 531
Query: 449 LQTRKKPGNSIIDL 462
+K PG S I++
Sbjct: 532 KGIKKAPGCSSIEI 545
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 131/425 (30%), Positives = 213/425 (50%), Gaps = 46/425 (10%)
Query: 26 HFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKI 85
HF G + A +F+ + ++ WNT+ + SDS L L+ +I G++ +
Sbjct: 11 HFDG----LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSY 66
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
+ L +CA+ + L G+ +H + K+G + + + +L+ MYA+ +++A ++FD
Sbjct: 67 SFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDR- 125
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
S R++VS LI GY ++ AR++FDEI KD+V W +M+ G V+ +EALEL+
Sbjct: 126 SSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELY 185
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
K M+ V PDE MV+V+SAC+ +++ GR +H +I + + + LID+YSKC
Sbjct: 186 KDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKC 245
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G +E A F KDV++W T+I G + L EAL +F +M R G PN+ T +SVL
Sbjct: 246 GEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVL 305
Query: 326 AACRHSGLITEG----CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM- 380
AC H G I G + +R+ GV + L+D+ ++ G + A++ M
Sbjct: 306 PACAHLGAIDIGRWIHVYINKRLKGVTNASSLL---TSLIDMYAKCGDIEAAKQVFDSML 362
Query: 381 ---------------------PAEDKF------------ISYKALLSACITYSEFDLGKK 407
A D F I++ LLSAC DLG+
Sbjct: 363 TRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRH 422
Query: 408 VANNM 412
+ +M
Sbjct: 423 IFRSM 427
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 130/274 (47%), Gaps = 35/274 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH+ + S+I + N LI Y + A LF + +DV SWNTL+ +
Sbjct: 215 LGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHT 274
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYM 118
+ E L+LF++++ G + +T++ + ACA L + G+ +H Y K G+
Sbjct: 275 HMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNA 334
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ +L+ MYAKC +++ A ++FD M + R++ S N +I G+
Sbjct: 335 SSLLTSLIDMYAKCGDIEAAKQVFDSMLT-RSLSSWNAMIFGF----------------- 376
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
MHG A A +LF KM G+ PD+ V +LSACS L GR
Sbjct: 377 ---------AMHGKANA-----AFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRH 422
Query: 239 VHRFILQN-NITQDAFVKTALIDMYSKCGSLEEA 271
+ R + Q+ IT +ID+ CG +EA
Sbjct: 423 IFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEA 456
>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 163/467 (34%), Positives = 246/467 (52%), Gaps = 14/467 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LHA K+A D+ VG +++ Y + DAR FD+MP R+V S+N L++ Y
Sbjct: 74 LGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYA 133
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCY-ATKVGLEYML 119
D L LF + +T L A EK + + AT G+ ++
Sbjct: 134 VAGDMDGALALFGGMR----SWTHVTWATLIRGFA--EKGDMAEARRWFEATPPGMRTVV 187
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
L+ Y +M+ A +FD M +R N + ++ GY + AR VFD I
Sbjct: 188 TW-TVLVQGYVCAGDMETAREVFDRMPAR-NAFVWSSMVTGYFKAGDAEEARAVFDRIPT 245
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+++V W +++ G + E+ALE F M+ E V PDE M S+LSAC+ L +L+ G+ V
Sbjct: 246 RNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKV 305
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H FI Q +I ++ FV LIDMY+KCG L A F K+ W TMI LA++G
Sbjct: 306 HDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQS 365
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+EAL +F+QMER G KPN T ++VL AC H G + EG Q+F ++ Y V+ +EH+ C
Sbjct: 366 DEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKL-DAYGVEAGVEHYGC 424
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL---- 415
LVDLL RAG L +A E + M E + + +LL AC + + ++ + V +++L
Sbjct: 425 LVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHSFH 484
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ + Y++L+N A W + + RR M K PG S ++L
Sbjct: 485 ASSNDAEYIMLANIMAASERWEQAEQMRRKMARRGVEKTPGCSSLEL 531
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 94/384 (24%), Positives = 169/384 (44%), Gaps = 20/384 (5%)
Query: 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE-KLHYGKTV 106
D W L+ Y S E +++ + + + V+L +A A +L GK++
Sbjct: 19 DPDKWAHLVKEYASQSLVREAALVYARNLPRRTHHQPLLPVLLKAAAASSPAELGLGKSL 78
Query: 107 HCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMEL 166
H A K L + ++ MY KC + +A R FDEM RN++S N L+ GY
Sbjct: 79 HAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPD-RNVISYNALLAGYAVAGD 137
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS---V 223
+D A +F + V W +++ G + EA F E P +V+ +
Sbjct: 138 MDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWF-----EATPPGMRTVVTWTVL 192
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
+ +++ R V ++AFV ++++ Y K G EEA F + +++
Sbjct: 193 VQGYVCAGDMETAREV----FDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNL 248
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
V W +I G A G +AL F+ M ++ +KP+E T S+L+AC G + +G ++
Sbjct: 249 VNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDF 308
Query: 344 MGGVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
+ + HFV L+D+ ++ G L A M ++ + ++SA ++ +
Sbjct: 309 ---INQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNEC-WNTMISALASHGQ 364
Query: 402 FDLGKKVANNMMKLGNQSHEAYVL 425
D + M + G + + VL
Sbjct: 365 SDEALHLFFQMERSGRKPNTITVL 388
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 151/460 (32%), Positives = 244/460 (53%), Gaps = 32/460 (6%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H + K L +++V N+LI YG++ + T+A +F M RD+ +WN+++S
Sbjct: 190 MHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGK 249
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ LF ++ G+ D +TLV L SA A+ K+VHCY + G +
Sbjct: 250 VAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDV------- 302
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
+I++ N +++ Y M +D A++VFD + D+D+V
Sbjct: 303 ------------------------GDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVS 338
Query: 185 WRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W +++ G ++ EA+ ++ M + EG+ P + VSVL A S L LQ G +H
Sbjct: 339 WNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALS 398
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++ + D +V T LID+Y+KCG L EA+ F + W +I GL +G G +AL
Sbjct: 399 IKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKAL 458
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
+F QM+++ IKP+ TFVS+LAAC H+GL+ +G F M VY + P +H+ C+VD+
Sbjct: 459 SLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDM 518
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L RAG L +A EFI+ MP + + ALL AC + ++GK + N+ +L ++ Y
Sbjct: 519 LGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYY 578
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
VL+SN YA G W V R ++ +K PG S +++K
Sbjct: 579 VLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVK 618
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 174/372 (46%), Gaps = 39/372 (10%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFK 73
L +++ SL+H Y R +A +FD+MP RDV +WN ++S + + + + L
Sbjct: 98 LHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLG 157
Query: 74 QLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
+++ EG+ D +TL + C L +H YA K GL L + NAL+ +Y K
Sbjct: 158 RMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLG 217
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
+ EA +F M R D+V W S++
Sbjct: 218 MLTEAHWVFGGMALR--------------------------------DLVTWNSIISANE 245
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI-TQDA 252
+ + A+ELF M++ GV PD +VS+ SA + + + VH ++ + D
Sbjct: 246 QGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDI 305
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME-R 311
A++DMY+K ++ A F +DVV+W T+I G GL NEA+R++ M
Sbjct: 306 IAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNH 365
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGL 369
+G+KP + TFVSVL A + G + +G R + ++ +V CL+DL ++ G
Sbjct: 366 EGLKPIQGTFVSVLPAYSYLGGLQQG---MRMHALSIKTGLNLDVYVTTCLIDLYAKCGK 422
Query: 370 LYQAEEFIKIMP 381
L +A + MP
Sbjct: 423 LVEAMFLFEHMP 434
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 144/339 (42%), Gaps = 71/339 (20%)
Query: 3 KGLHAHVTKTALD-SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +H +V + D DI GN+++ Y +M+ A+ +FD +P RDV SWNTL++ Y
Sbjct: 289 KSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQ 348
Query: 62 FSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E + ++ + EG+ + T V + A + L L G +H + K GL +
Sbjct: 349 NGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVY 408
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ L+ +YAKC ++ EA+ LF+ M RR+ N +I G
Sbjct: 409 VTTCLIDLYAKCGKLVEAMFLFEHM-PRRSTGPWNAIIAGL------------------- 448
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+HG +AL LF +M E + PD VS+L+ACS + GR
Sbjct: 449 -------GVHG-----HGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFF 496
Query: 241 RFILQN--NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
++Q I A T ++DM + G L+EA
Sbjct: 497 D-LMQTVYGIVPIAKHYTCMVDMLGRAGQLDEA--------------------------- 528
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
F ++ IKP+ A + ++L ACR G + G
Sbjct: 529 -------FEFIQSMPIKPDSAVWGALLGACRIHGNVEMG 560
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 129/265 (48%), Gaps = 5/265 (1%)
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N+ + L++ Y+ V A VFDE+ ++D+ W +M+ G + + +A+ L +M+
Sbjct: 101 NVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMV 160
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
EGV D + SVL C L + ++H + +++ ++ + FV ALID+Y K G L
Sbjct: 161 GEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLT 220
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
EA F +D+VTW ++I G A+ +F+ M G+ P+ T VS+ +A
Sbjct: 221 EAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVA 280
Query: 330 HSG--LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
G L + + R G + V I +VD+ ++ + A++ +P D +
Sbjct: 281 QCGDELGAKSVHCYVRRRG-WDVGDIIAGNA-MVDMYAKMSKIDAAQKVFDNLPDRD-VV 337
Query: 388 SYKALLSACITYSEFDLGKKVANNM 412
S+ L++ + + ++ N+M
Sbjct: 338 SWNTLITGYMQNGLANEAIRIYNDM 362
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HA KT L+ D+YV LI Y + +A LF+ MP R G WN +++
Sbjct: 391 GMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGV 450
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-VHCYATKVGLEYMLN 120
+ L LF Q+ E I D +T V L +AC+ + G++ T G+ +
Sbjct: 451 HGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAK 510
Query: 121 MENALLLMYAKCKEMDEALRLFDEM 145
++ M + ++DEA M
Sbjct: 511 HYTCMVDMLGRAGQLDEAFEFIQSM 535
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/460 (34%), Positives = 247/460 (53%), Gaps = 5/460 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + +T D D +V LI + A +F + +V + ++ +
Sbjct: 48 IHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGR 107
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
S + + L+ ++I ++ D + + AC L + +H K+G ++
Sbjct: 108 SADGVSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLK 163
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
++ +Y K E+ A ++FDEM R + V+ ++IN Y + + A E+F ++ KD V
Sbjct: 164 MMEIYGKSGELVNAKKMFDEMPDRDH-VAATVMINCYSECGFIKEALELFQDVKIKDTVC 222
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ G V+ K+ +ALELF++M E V+ +E V VLSACS L L+ GR VH F+
Sbjct: 223 WTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVE 282
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ FV ALI+MYS+CG + EA F KDV+++ TMI GLA +G EA+
Sbjct: 283 NQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAIN 342
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
F M +G +PN+ T V++L AC H GL+ G ++F M V+ V+P IEH+ C+VDLL
Sbjct: 343 EFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLL 402
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
R G L +A FI+ +P E I LLSAC + +LG+K+A + + N YV
Sbjct: 403 GRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYV 462
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
LLSN YA G W E E R +M++ K+PG S I++ +
Sbjct: 463 LLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDN 502
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 119/246 (48%), Gaps = 10/246 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ V ++ +VGN+LI+ Y R +AR +F M +DV S+NT++S
Sbjct: 273 LGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLA 332
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
S E + F+ ++ G +++TLV L +AC+ L G V +V +E +
Sbjct: 333 MHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQI 392
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVD-LAREVFD 175
++ + + ++EA R + + + + L L++ + +MEL + +A+ +F+
Sbjct: 393 EHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFE 452
Query: 176 -EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
E D + S ++ + + +E+ E+ + M D G+ ++E S + + +
Sbjct: 453 SENPDSGTYVLLSNLYA--SSGKWKESTEIRESMRDSGI--EKEPGCSTIEVDNQIHEFL 508
Query: 235 YGRLVH 240
G + H
Sbjct: 509 VGDIAH 514
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 22/174 (12%)
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
+ ++SVL +C +++++ +H I++ QDAFV LI + S S++ A F
Sbjct: 30 KTLISVLRSCKNIAHVPS---IHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSY 86
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR-------H 330
+V +T MI+G + G + + ++++M + P+ SVL AC H
Sbjct: 87 VSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIH 146
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
+ ++ G R +G + ++++ ++G L A++ MP D
Sbjct: 147 AQVLKLGFGSSRSVG------------LKMMEIYGKSGELVNAKKMFDEMPDRD 188
>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Glycine max]
Length = 849
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/532 (30%), Positives = 269/532 (50%), Gaps = 70/532 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H +V + D D+ V N +I FY + R LF+++ +DV SW T+++
Sbjct: 274 GKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQ 333
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S G+ + LF +++ +G D + ++C L+ L G+ VH YA KV ++ +
Sbjct: 334 NSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFV 393
Query: 122 ENALLLMYAKCKEMD-------------------------------EALRLFDEMGSRRN 150
+N L+ MYAKC + EAL LF EM +
Sbjct: 394 KNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLS 453
Query: 151 -----------------------------IVSLNILINGYIDMELVDL---------ARE 172
I+ + ++ + L+D+ AR
Sbjct: 454 PPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARL 513
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
VF+EI D+DIV+W +M G + + EE+L+L+K + + P+E +V++A S++++
Sbjct: 514 VFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIAS 573
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L++G+ H +++ + D FV +L+DMY+KCGS+EE+ F T+ +D+ W +MI
Sbjct: 574 LRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMIST 633
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
A +G +AL VF +M +G+KPN TFV +L+AC H+GL+ G F M + ++P
Sbjct: 634 YAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESMSK-FGIEP 692
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
I+H+ C+V LL RAG +Y+A+EF+K MP + + +++LLSAC +LG A
Sbjct: 693 GIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGTYAAEMA 752
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ +Y+LLSN +A +G W V R M + K+PG S I++ +
Sbjct: 753 ISCDPADSGSYILLSNIFASKGMWASVRMVREKMDMSRVVKEPGWSWIEVNN 804
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 156/318 (49%), Gaps = 32/318 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LH V K D+YVG SLI FY + +AR++FD + + +W +++ Y
Sbjct: 176 LHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGR 235
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
S L LF Q+ + D+ + + SAC+ LE L GK +H Y + G + +++ N
Sbjct: 236 SEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNG 295
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
++ Y KC + V R++F+ +VDKD+V
Sbjct: 296 IIDFYLKCHK--------------------------------VKTGRKLFNRLVDKDVVS 323
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ GC++ +A++LF +M+ +G PD SVL++C SL LQ GR VH + +
Sbjct: 324 WTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAI 383
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ NI D FVK LIDMY+KC SL A F +VV++ MIEG + EAL
Sbjct: 384 KVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALD 443
Query: 305 VFYQMERKGIKPNEATFV 322
+F +M P TFV
Sbjct: 444 LFREMRLSLSPPTLLTFV 461
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 196/399 (49%), Gaps = 48/399 (12%)
Query: 3 KGLHAHVTKTAL-DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +HAH+ D+++ N+L+H Y +M L +DA+ LFD MP R++ +W++++S+Y
Sbjct: 71 KKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQ 130
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFS---ACARLEKLHYGKTVHCYATKVGLEYM 118
S E L+LF + F ++K IL S AC +L L +H + K G
Sbjct: 131 HGYSVEALLLFCR--FMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQD 188
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + +L+ YAK GY VD AR +FD +
Sbjct: 189 VYVGTSLIDFYAK---------------------------RGY-----VDEARLIFDGLK 216
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K V W +++ G K + E +L+LF +M + V PD V+ SVLSACS L L+ G+
Sbjct: 217 VKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQ 276
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++L+ D V +ID Y KC ++ F + KDVV+WTTMI G
Sbjct: 277 IHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSF 336
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH-- 356
+A+ +F +M RKG KP+ SVL +C + +G Q+ Y ++ I++
Sbjct: 337 HGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVH-----AYAIKVNIDNDD 391
Query: 357 FV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
FV L+D+ ++ L A + ++ A + +SY A++
Sbjct: 392 FVKNGLIDMYAKCDSLTNARKVFDLVAAIN-VVSYNAMI 429
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 9/198 (4%)
Query: 234 QYGRLVHRFILQNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
Y + +H I+ Q D F+ L+ YSK +A F +++VTW++M+
Sbjct: 68 HYYKKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSM 127
Query: 293 LANYGLGNEALRVFYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQL--FRRMGGVYR 349
+G EAL +F + R KPNE SV+ AC G +++ QL F GG +
Sbjct: 128 YTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQ 187
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
+ L+D ++ G + +A + + +++ A+++ ++ K+
Sbjct: 188 ---DVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTT-VTWTAIIAGYAKLGRSEVSLKLF 243
Query: 410 NNMMKLGNQSHEAYVLLS 427
N M + G+ + YV+ S
Sbjct: 244 NQMRE-GDVYPDRYVISS 260
>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
Length = 603
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 167/508 (32%), Positives = 266/508 (52%), Gaps = 47/508 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMA---------------------------- 32
+G+ +HA + KTAL S + N L+ Y R+
Sbjct: 54 LGRAVHARLVKTALTSHTLLSNRLVALYSRLPSSAAAVAAFDDLPHKNAHSYNTLLAALL 113
Query: 33 ----LFTDARVLFDKMPF--RDVGSWNTLMSIYNDFSDSGEVLILFKQL-----IFEGIV 81
F DA LFD MP R++ S+NTLMS E L + +L + G+
Sbjct: 114 RRPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEALRVVARLARDRFLGPGLA 173
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
D+ T+V + +ACA + + +H G+E + M NA++ Y+K ++EA L
Sbjct: 174 MDRFTVVSVATACAGIRAARPLREMHGAVVVSGMELTVIMANAMVNAYSKAWRVEEARHL 233
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
FD++ R N V+ +I+GY ++ +D A +VFD + DKD V W +++ G + + + A
Sbjct: 234 FDQISIRDN-VTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTA 292
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF---VKTAL 258
LELF++M+ EGV+P +VSVL AC+ L + G+ +H IL+ +I D F + AL
Sbjct: 293 LELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNAL 352
Query: 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
+DMYSKCG + A+ F++ +D ++W +M+ G ++ GLG ++L +F +M G++P
Sbjct: 353 VDMYSKCGDMTAAMAVFHRMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTH 412
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
TF++VL AC HSGL++ G + M + V+P EH+ +D L R L +A EFIK
Sbjct: 413 VTFLAVLTACSHSGLVSNGRLILESMED-HGVEPRAEHYAAFIDALGRNRQLEEAIEFIK 471
Query: 379 IMPAE---DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
+P+ S+ ALL AC + +L ++VA + KL + YV+LSN YA G
Sbjct: 472 DLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFKLEPGNSGRYVMLSNIYAAAGQ 531
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDLK 463
W + R MKE +K S I+++
Sbjct: 532 WDDARRVRGLMKEKGLKKDQAYSWIEVR 559
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 151/351 (43%), Gaps = 50/351 (14%)
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
L G+ VH K L + N L+ +Y++ A+ FD++ +N S N L+
Sbjct: 52 LRLGRAVHARLVKTALTSHTLLSNRLVALYSRLPSSAAAVAAFDDL-PHKNAHSYNTLLA 110
Query: 160 GYIDM-ELVDLAREVFDEIV--DKDIVLWRSMMHGCVKAKQPEEALELFKKM-----IDE 211
+ + A +FD + +++V + ++M V + EAL + ++ +
Sbjct: 111 ALLRRPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEALRVVARLARDRFLGP 170
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
G+ D +VSV +AC+ + + R +H ++ + + + A+++ YSK +EEA
Sbjct: 171 GLAMDRFTVVSVATACAGIRAARPLREMHGAVVVSGMELTVIMANAMVNAYSKAWRVEEA 230
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK------------------- 312
F + +D VTWT+MI G +EAL+VF M K
Sbjct: 231 RHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEED 290
Query: 313 ------------GIKPNEATFVSVLAACRHSGLITEG----CQLFRRMGGVYRVQPTIEH 356
G+ P VSVL AC GL+T G C + RR G I +
Sbjct: 291 TALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHN 350
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
LVD+ S+ G + A MP D FIS+ ++++ +S LGK+
Sbjct: 351 --ALVDMYSKCGDMTAAMAVFHRMPERD-FISWNSMVTG---FSHNGLGKQ 395
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/460 (34%), Positives = 247/460 (53%), Gaps = 2/460 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + + D ++ L+ + A +F +V + L+ + +
Sbjct: 68 IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ + L+ +++ + I+ D + + AC L G+ VH A K+GL +
Sbjct: 128 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLR 187
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
++ +Y KC E+ +A R+F+EM ++V+ ++I+ Y D LV+ A VF + KD V
Sbjct: 188 IMELYGKCGELGDARRVFEEMPE--DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVC 245
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ G V+ ++ ALE F+ M E V P+E +V VLSACS L L+ GR VH ++
Sbjct: 246 WTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR 305
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ I + FV ALI+MYS+CGS++EA F + +DV+T+ TMI GL+ G +A+
Sbjct: 306 KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIE 365
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+F M + ++P TFV VL AC H GL+ G ++F M Y V+P IEH+ C+VDLL
Sbjct: 366 LFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLL 425
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
R G L +A + I+ M I LLSAC + +LG++VA + G YV
Sbjct: 426 GRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYV 485
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
LLS+ YA G W E A+ R MKE +K+PG S I++ +
Sbjct: 486 LLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNN 525
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 167/385 (43%), Gaps = 85/385 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+ K L S+ V ++ YG+ DAR +F++MP DV + ++S Y+D
Sbjct: 166 GREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSD 224
Query: 62 ---FSDSGEV----------------------------LILFKQLIFEGIVADKITLVIL 90
++G V L F+ + E + ++ T+V +
Sbjct: 225 QGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCV 284
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SAC++L L G+ VH Y K +E L + NAL+ MY++C +DEA +FDEM
Sbjct: 285 LSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK---- 340
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
D+D++ + +M+ G + +A+ELF+ MI
Sbjct: 341 ----------------------------DRDVITYNTMISGLSMNGKSRQAIELFRVMIG 372
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT------ALIDMYSK 264
+ P V VL+ACS + +G F + +++T+D V+ ++D+ +
Sbjct: 373 RRLRPTNVTFVGVLNACSHGGLVDFG-----FKIFHSMTRDYGVEPQIEHYGCMVDLLGR 427
Query: 265 CGSLEEA--LVTFYKTDCKDVVTWTTMIEGL---ANYGLGNEALRVFYQMERKGIKPNEA 319
G LEEA L+ K D + T++ N LG + +V +E +G + +
Sbjct: 428 VGRLEEAYDLIRTMKMT-PDHIMLGTLLSACKMHKNLELGEQVAKV---LEDRG-QADSG 482
Query: 320 TFVSVLAACRHSGLITEGCQLFRRM 344
T+V + SG E Q+ +M
Sbjct: 483 TYVLLSHVYASSGKWKEAAQVRAKM 507
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 121/248 (48%), Gaps = 15/248 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+++ K ++ +++VGN+LI+ Y R +A+ +FD+M RDV ++NT++S +
Sbjct: 296 IGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLS 355
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
S + + LF+ +I + +T V + +AC+ + +G K H G+E +
Sbjct: 356 MNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQI 415
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAREVFDE 176
++ + + ++EA L M + + L L++ + ++EL + +V ++
Sbjct: 416 EHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLED 475
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
D + + H + + +EA ++ KM + G+ + CSS ++
Sbjct: 476 RGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKE--------PGCSS---IEVN 524
Query: 237 RLVHRFIL 244
+H F+L
Sbjct: 525 NEIHEFLL 532
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/465 (33%), Positives = 243/465 (52%), Gaps = 34/465 (7%)
Query: 1 MGKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
G+ +HAH+ + LD+ + + N +++ Y + DAR +FD+MP +D+ +W L++ +
Sbjct: 105 QGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGF 164
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ + + L+LF Q++ G + TL L A L G +H + K G + +
Sbjct: 165 SQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSV 224
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ +AL+ MYA+C MD A FD M +
Sbjct: 225 YVGSALVDMYARCGHMDAAQLAFDGMPT-------------------------------- 252
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K V W +++ G + + E AL L KM + P SVLSAC+S+ L+ G+ V
Sbjct: 253 KSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWV 312
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++++ + AF+ L+DMY+K GS+++A F + DVV+W TM+ G A +GLG
Sbjct: 313 HAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLG 372
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
E L F QM R GI+PNE +F+ VL AC HSGL+ EG F M Y+V+P + H+V
Sbjct: 373 KETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVT 431
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
VDLL R GLL +AE FI+ MP E + ALL AC + +LG A +L
Sbjct: 432 FVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHD 491
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+LLSN YA G W +VA+ R+ MKE +K+P S +++++
Sbjct: 492 SGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIEN 536
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 172/367 (46%), Gaps = 49/367 (13%)
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLNM 121
SD G L + +V D L C RL K+ G+ VH + L+ L +
Sbjct: 66 SDGGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVL 125
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+N ++ MYAKC +D+A R+FDEM + KD
Sbjct: 126 QNIIVNMYAKCGCLDDARRMFDEMPT--------------------------------KD 153
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G + +P +AL LF +M+ G P+ + S+L A S L G +H
Sbjct: 154 MVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHA 213
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F L+ +V +AL+DMY++CG ++ A + F K V+W +I G A G G
Sbjct: 214 FCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEH 273
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM--GGVYRVQPTIEHFV- 358
AL + ++M+RK +P T+ SVL+AC G + +G + M G+ + F+
Sbjct: 274 ALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIA-----FIG 328
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN---NMMK 414
L+D+ ++AG + A+ + D +S+ +L+ C ++ LGK+ + M++
Sbjct: 329 NTLLDMYAKAGSIDDAKRVFDRLVKPD-VVSWNTMLTGC---AQHGLGKETLDRFEQMLR 384
Query: 415 LGNQSHE 421
+G + +E
Sbjct: 385 IGIEPNE 391
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 165/495 (33%), Positives = 265/495 (53%), Gaps = 44/495 (8%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYG--RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
LH V ++ D YV +L+ Y + F A +F +P +V WN ++
Sbjct: 52 LHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIK----- 106
Query: 63 SDSGEVLILFKQLIFEGIV-----ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
E LFK + F G + +K T LF AC+ + + G+ +H + K G+
Sbjct: 107 -GCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGS 165
Query: 118 MLNMENALLLMYA------------------------------KCKEMDEALRLFDEMGS 147
+++++A + MYA KC ++ A LF +M
Sbjct: 166 DVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQM-P 224
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
+NI S N++ING + AR++FDE+ ++D + W SM+ G + A + +EALE+F++
Sbjct: 225 VKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQ 284
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M E P ++ SVL+ACS++ + GR VH ++ +N+I DA + TAL+DMY+KCG
Sbjct: 285 MQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGR 344
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
L+ F + +++ TW MI GLA +G +AL +F +++ +KPN T V VL A
Sbjct: 345 LDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTA 404
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C H+G + +G ++F+ M Y V P +EH+ C+VDLL R+GL +AE+ I MP +
Sbjct: 405 CAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAA 464
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
+ ALL AC + FDL ++V +++L Q+ YVLLSN YA G + +V++ R+ MK
Sbjct: 465 VWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMK 524
Query: 448 ELQTRKKPGNSIIDL 462
+ + PG SI+DL
Sbjct: 525 DRGIKTVPGVSIVDL 539
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 100/468 (21%), Positives = 180/468 (38%), Gaps = 133/468 (28%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARV---------------------- 39
G+ +H HV K + SD+++ ++ IH Y DAR
Sbjct: 151 GRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKC 210
Query: 40 --------LFDKMPFRDVGSWNTLMS-------------IYNDFSDSGEV---------- 68
LF +MP +++GSWN +++ ++++ S+ E+
Sbjct: 211 GVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYI 270
Query: 69 --------LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
L +F+Q+ E + L + +AC+ + + G+ VH Y + ++
Sbjct: 271 SAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAV 330
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ ALL MYAKC +D +F+EM R
Sbjct: 331 LGTALLDMYAKCGRLDMGWEVFEEMKER-------------------------------- 358
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+I W +M+ G + E+ALELF K+ + + P+ +V VL+AC+
Sbjct: 359 EIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACA------------ 406
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
FV L + + + FY D ++ + M++ L GL +
Sbjct: 407 ---------HAGFVDKGL--------RIFQTMREFYGVD-PELEHYGCMVDLLGRSGLFS 448
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV-YRVQPTIE-HFV 358
EA + M +KPN A + ++L ACR G L R+G + ++P +V
Sbjct: 449 EAEDLINSMP---MKPNAAVWGALLGACRIHG----NFDLAERVGKILLELEPQNSGRYV 501
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAED-KFISYKALLSACITYSEFDLG 405
L ++ ++ G + K+M K + +++ T EF +G
Sbjct: 502 LLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMG 549
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 161/465 (34%), Positives = 239/465 (51%), Gaps = 35/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSI 58
+G LHA K L SD +V N+LI+ Y + + AR + D P D SWNT+++
Sbjct: 111 VGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAG 170
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y + L F Q+ ++ D +TL+ ACAR + GK H G E
Sbjct: 171 YIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEIN 230
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
M ++L+ MYAKC ++++A R +FD +
Sbjct: 231 CYMGSSLISMYAKCGQVEDA--------------------------------RRIFDGMP 258
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D++ V W SM+ G + Q +EA++LF+ M GV D+ + +V+S+C + L GR
Sbjct: 259 DRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRY 318
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH + + + +D VK +LIDMYSKCG +++A F +D +WT +I G A GL
Sbjct: 319 VHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGL 378
Query: 299 GNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F QME +G + PNE TF+ VL +C H GL+ +G + F RM +Y + P IEH+
Sbjct: 379 SGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHY 438
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RA LL +AE+FIK MP + +++LL AC T E L + VA + L
Sbjct: 439 GCMVDLLGRAKLLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEP 498
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
VLLS YA W + + R + + K+PG S I++
Sbjct: 499 NKCGGDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEV 543
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 112/266 (42%), Gaps = 42/266 (15%)
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP-DEEVMVSVLSACSSLSNLQYGRLVH 240
+ L S++ P +L + G P D + + LS + + ++ G +H
Sbjct: 57 VPLLHSVLRSLSSGPVPSLSLSFLSLLRRSGYMPIDNYSLSAALSTAARMPSVVVGAQLH 116
Query: 241 RFILQNNITQDAFVKTALIDMYSKCG--SLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
++ ++ D FV LI+MYS C S +++ D V+W T+I G + GL
Sbjct: 117 ALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGYIHAGL 176
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACR-----------HSGLITEGCQLFRRMGG- 346
N+AL+ F QM + + ++ T ++ L AC H+ L+T G ++ MG
Sbjct: 177 PNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSS 236
Query: 347 ----------------VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI--------MPA 382
++ P + VC ++S L Q++E IK+ +
Sbjct: 237 LISMYAKCGQVEDARRIFDGMPD-RNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKV 295
Query: 383 EDKFISYKALLSACITYSEFDLGKKV 408
+D IS ++S+C DLG+ V
Sbjct: 296 DDATIS--TVVSSCGQMGALDLGRYV 319
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/465 (33%), Positives = 247/465 (53%), Gaps = 36/465 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIY 59
G+ +H+ K + D++V N+LI + AR +FD +P RDV SWN+++S Y
Sbjct: 146 GREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGY 205
Query: 60 NDFSDSGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
L +F +L+ +G + D++TLV S C RL L GK +H T G
Sbjct: 206 LQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLD 265
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + ++L+ MY+KC ++++A R+VFD I
Sbjct: 266 VFVGSSLIDMYSKCGQIEDA--------------------------------RKVFDRIP 293
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++ V W SM+ G ++ +EA+ELF++M G D + VLSAC L GR
Sbjct: 294 HRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRW 353
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H + +N+I D + ALI MYSKCG +++AL F+ D+ +W+ +I GLA G
Sbjct: 354 IHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGE 413
Query: 299 GNEALRVFYQMER-KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
++AL +F QME I+PNE TF+ VL AC H G + +G F M +Y + P IEH+
Sbjct: 414 SDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHY 473
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RA LL +AE+FI+ +P + + +++LL AC + +L + A + +L
Sbjct: 474 GCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEP 533
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ A VLLSN YA W +V R++M + +K+PG S +++
Sbjct: 534 RRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEI 578
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 182/375 (48%), Gaps = 41/375 (10%)
Query: 34 FTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSA 93
F +R LF ++ +V SWN + Y+ S E + L+ ++ G + D + + A
Sbjct: 77 FAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKA 136
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR-RNIV 152
CARL LH G+ +H K+G+ + ++NAL+ ++ C ++ A +FD + + R++V
Sbjct: 137 CARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVV 196
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
S N +I+GY+ +LA +VF E++ D
Sbjct: 197 SWNSMISGYLQSHRYELALKVFWELLG------------------------------DGS 226
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
++PDE +VS LS C L L G+ +H + D FV ++LIDMYSKCG +E+A
Sbjct: 227 LSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDAR 286
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F + ++ V WT+MI G A L EA+ +F +M+ G + AT VL+AC H G
Sbjct: 287 KVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWG 346
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
+ +G R +Y + +IE + L+ + S+ G + +A E + D F S
Sbjct: 347 ALAQG-----RWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIF-S 400
Query: 389 YKALLSACITYSEFD 403
+ A++S E D
Sbjct: 401 WSAVISGLAMNGESD 415
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 135/301 (44%), Gaps = 37/301 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H T + D++VG+SLI Y + DAR +FD++P R+ W ++++ Y
Sbjct: 249 LGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYA 308
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E + LF+++ G AD T+ + SAC L G+ +H Y + +E LN
Sbjct: 309 QSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLN 368
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
NAL+ MY+KC ++ +AL E+F +
Sbjct: 369 ARNALIGMYSKCGDIQKAL--------------------------------EIFHGLTQP 396
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
DI W +++ G + ++AL LF +M + + P+E + VL AC+ + G
Sbjct: 397 DIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYY 456
Query: 240 HRFILQ-NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDVVTWTTMIEGLANY 296
+ Q N+T ++D+ + L EA F +T DVV W +++ N+
Sbjct: 457 FNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEA-EKFIRTLPIQPDVVIWRSLLFACRNH 515
Query: 297 G 297
G
Sbjct: 516 G 516
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 136/285 (47%), Gaps = 21/285 (7%)
Query: 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS 228
+R +F +I ++ W M ++ P E + L+ M+ G PD VL AC+
Sbjct: 79 FSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACA 138
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF--YKTDCKDVVTW 286
LS L GR +H L+ + D FV+ ALI +S CG++E A F +DVV+W
Sbjct: 139 RLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSW 198
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQ---LFR 342
+MI G AL+VF+++ G + P+E T VS L+ C GL+ G + LF
Sbjct: 199 NSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFT 258
Query: 343 RMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYS 400
G V V FV L+D+ S+ G + A + +P + + + ++++ Y+
Sbjct: 259 GSGFVLDV------FVGSSLIDMYSKCGQIEDARKVFDRIPHRNT-VCWTSMIAG---YA 308
Query: 401 EFDLGKKVAN--NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443
+ DL K+ M++G + +A + A GHW +A+ R
Sbjct: 309 QSDLFKEAIELFREMQIGGFAADAATIACVLSAC-GHWGALAQGR 352
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/421 (36%), Positives = 236/421 (56%), Gaps = 4/421 (0%)
Query: 45 PFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA--RLEKLHY 102
P + SW + ++++ E F ++ G+ + IT + L SAC LE L +
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109
Query: 103 GKTVHCYATKVGLEY-MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY 161
G ++H Y K+GL+ + + AL+ MY+KC ++D A +FDEM RN VS N +I+G
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEM-HVRNSVSWNTMIDGC 168
Query: 162 IDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMV 221
+ V A +FD++ ++D + W SM+ G VK E+ALE F++M GV PD ++
Sbjct: 169 MRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTII 228
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK 281
SVL+AC++L L G ++RF+++ + + + +LIDMYS+CG + A F + +
Sbjct: 229 SVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKR 288
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
+V+W +MI G A G EAL F M ++G +P+ +F L AC HSGL+ EG Q F
Sbjct: 289 SLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFF 348
Query: 342 RRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
M ++ P IEH+ CLVDL SRAG L A I MP + + +LL+AC T+ +
Sbjct: 349 DIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGD 408
Query: 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
L +++ + ++ S YVLLSN YA G W ++ R+ MK L KKPG S I+
Sbjct: 409 VGLAERLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIE 468
Query: 462 L 462
+
Sbjct: 469 M 469
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 143/367 (38%), Gaps = 105/367 (28%)
Query: 2 GKGLHAHVTKTALDS-DIYVGNSLIHFYG------------------------------- 29
G +HA+V K LD+ ++ VG +L+ Y
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCM 169
Query: 30 RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
R +A VLFD+M RD SW +++ + + L F+++ G+ D +T++
Sbjct: 170 RNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIIS 229
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +ACA L L G ++ + K + + + N+L+ MY++C + A ++F++M +R
Sbjct: 230 VLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQM-PKR 288
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
++VS W SM+ G EEALE F M
Sbjct: 289 SLVS-------------------------------WNSMIVGFALNGHAEEALEFFNLMR 317
Query: 210 DEGVTPDEEVMVSVLSACSSLS----NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
EG PD L+ACS LQ+ ++ R I+ L+D+YS+
Sbjct: 318 KEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKR---TRKISPRIEHYGCLVDLYSRA 374
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G LE +AL V M +KPNE S+L
Sbjct: 375 GRLE-------------------------------DALNVIANMP---MKPNEVVLGSLL 400
Query: 326 AACRHSG 332
AACR G
Sbjct: 401 AACRTHG 407
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 23/170 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G ++ V K +I + NSLI Y R AR +F++MP R + SWN+++ +
Sbjct: 242 LGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFA 301
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L F + EG D ++ +AC+ H GL++
Sbjct: 302 LNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACS-----------HSGLVDEGLQFFDI 350
Query: 121 ME------------NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
M+ L+ +Y++ +++AL + M + N V L L+
Sbjct: 351 MKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLL 400
>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
Length = 802
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 160/495 (32%), Positives = 257/495 (51%), Gaps = 39/495 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMA---LFTDARVLFDKMPFRDVGSWNTLMSIYND 61
LH V K+ + V N+L+ Y + DAR + D+MP +D +W T++ Y
Sbjct: 181 LHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVR 240
Query: 62 FSDSG-------------------------------EVLILFKQLIFEGIVADKITLVIL 90
D G E LF++++ E + D+ T +
Sbjct: 241 RGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSV 300
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYM----LNMENALLLMYAKCKEMDEALRLFDEMG 146
SACA + +GK+VH ++ ++ L + NAL+ Y+KC + A R+FD M
Sbjct: 301 LSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNM- 359
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
+ +++VS N +++GY++ +D A EVF+E+ K+ + W M+ G V E+AL+LF
Sbjct: 360 TLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFN 419
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
KM E V P + ++AC L L++G+ +H I+Q ALI MY++CG
Sbjct: 420 KMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCG 479
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+++EA + F D V+W MI L +G G EAL +F +M +GI P+ +F++VL
Sbjct: 480 AVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLT 539
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC HSGL+ EG + F M + + P +H+ L+DLL RAG + +A + IK MP E
Sbjct: 540 ACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTP 599
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
++A+LS C T + +LG A+ + K+ Q Y+LLSN Y+ G W + A R+ M
Sbjct: 600 SIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLM 659
Query: 447 KELQTRKKPGNSIID 461
++ +K+PG S I+
Sbjct: 660 RDRGVKKEPGCSWIE 674
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH H+ + + GN+LI Y R +A ++F MP D SWN ++S
Sbjct: 449 GKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQ 508
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSAC 94
E L LF +++ EGI D+I+ + + +AC
Sbjct: 509 HGHGREALELFDRMVAEGIYPDRISFLTVLTAC 541
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 160/471 (33%), Positives = 246/471 (52%), Gaps = 41/471 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ H ++D++V ++LI Y + DAR LFD++P R+V SW ++++ Y
Sbjct: 2034 GRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQ 2093
Query: 62 FSDSGEVLILFKQLIFE--------GIVADKITLVILFSACARLEKLHYGKTVHCYATKV 113
+ L+LFK + E + D + +V + SAC+R+ + VH + K
Sbjct: 2094 NEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKK 2153
Query: 114 GLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
G + + + N L+ YAKC + LV +++V
Sbjct: 2154 GFDGSIGVGNTLMDAYAKCGQ------------------------------PLV--SKKV 2181
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSN 232
FD + +KD + W SM+ ++ EALE+F M+ GV + + +VL AC+
Sbjct: 2182 FDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGA 2241
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L+ G+ +H +++ ++ + V T++IDMY KCG +E A TF + K+V +WT M+ G
Sbjct: 2242 LRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAG 2301
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
+G EAL +FY+M R G+KPN TFVSVLAAC H+GL+ EG F M Y ++P
Sbjct: 2302 YGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEP 2361
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
IEH+ C+VDL RAG L +A IK M + F+ + +LL AC + DLG+ A +
Sbjct: 2362 GIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKL 2421
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+L + YVLLSN YA G W +V R MK Q K PG S+++LK
Sbjct: 2422 FELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELK 2472
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 137/371 (36%), Positives = 212/371 (57%), Gaps = 1/371 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +HA + ++ L +D + LIH Y A +LF ++ +WN ++
Sbjct: 44 RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
S + L+L+K ++ +GI ADK T + AC + GK VH K G + ++
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N L+ Y KC AL++F++M RN+VS +I+G I + AR +FDEI K++
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKM-RVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV 222
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +M++G ++ +QPEEALELFK+M E + P+E MVS++ AC+ + L GR +H +
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
++N I ++ TALIDMYSKCGS+++A+ F K + TW +MI L +GLG EA
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEA 342
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F +MER +KP+ TF+ VL AC H + EGC F RM Y + P EH+ C+ +
Sbjct: 343 LNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTE 402
Query: 363 LLSRAGLLYQA 373
L +R+ L +A
Sbjct: 403 LYARSNNLDEA 413
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 169/355 (47%), Gaps = 39/355 (10%)
Query: 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH 107
+V SWN++++ DS E L F L G++ + + +C+ L L G+ H
Sbjct: 1979 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 2038
Query: 108 CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
A G E L + +AL+ MY+KC ++ +A LFDE+ RN+VS +I GY+ E
Sbjct: 2039 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEI-PLRNVVSWTSMITGYVQNEQA 2097
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG--VTPDEEVMVSVLS 225
D A +F + + EE E +++G V D VMVSVLS
Sbjct: 2098 DNALLLFKDFL--------------------EEETE-----VEDGNNVPLDSVVMVSVLS 2132
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
ACS +S VH F+++ V L+D Y+KCG + F + KD ++
Sbjct: 2133 ACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDIS 2192
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
W +MI A GL EAL VF+ M R G++ N T +VL AC H+G + G + ++
Sbjct: 2193 WNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQV 2252
Query: 345 GGVYRVQPTIEHFVC----LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
++ +E+ VC ++D+ + G + A++ M E S+ A+++
Sbjct: 2253 -----IKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRM-KEKNVKSWTAMVAG 2301
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 40/244 (16%)
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
+F +I + W ++ E+AL L+K M+ +G+ D+ V+ AC++ +
Sbjct: 81 LFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLS 140
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
+ G++VH +++ + D FV+ LID Y KCG AL F K ++VV+WTT+I G
Sbjct: 141 IDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISG 200
Query: 293 LANYG-------------------------------LGNEALRVFYQMERKGIKPNEATF 321
L + G EAL +F +M+ + I PNE T
Sbjct: 201 LISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTM 260
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEEFI 377
VS++ AC G++T G R Y ++ IE V L+D+ S+ G + A E
Sbjct: 261 VSLIKACTEMGILTLG-----RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVF 315
Query: 378 KIMP 381
+ MP
Sbjct: 316 ETMP 319
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 125/304 (41%), Gaps = 64/304 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFY-----GRMAL---------------------- 33
+GK +H + K D++V N+LI FY R AL
Sbjct: 143 LGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLI 202
Query: 34 ----FTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
+AR +FD++P ++V SW +++ Y E L LFK++ E I ++ T+V
Sbjct: 203 SCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVS 262
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L AC + L G+ +H YA K +E + + AL+ MY+KC + +A+
Sbjct: 263 LIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAI---------- 312
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
EVF+ + K + W SM+ +EAL LF +M
Sbjct: 313 ----------------------EVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEME 350
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
V PD + VL AC + N++ G R I + ++Y++ +L
Sbjct: 351 RVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNL 410
Query: 269 EEAL 272
+EA
Sbjct: 411 DEAF 414
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 11/179 (6%)
Query: 174 FDEIVDK-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
F + VDK ++ W S++ + EAL F + G+ P + +CS+L +
Sbjct: 1971 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 2030
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L GR+ H+ D FV +ALIDMYSKCG L++A F + ++VV+WT+MI G
Sbjct: 2031 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 2090
Query: 293 LANYGLGNEALRVFYQM--------ERKGIKPNEATFVSVLAAC-RHSGL-ITEGCQLF 341
+ AL +F + + + VSVL+AC R SG ITEG F
Sbjct: 2091 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGF 2149
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 75/155 (48%), Gaps = 1/155 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+G+H + K ++ +Y+G +LI Y + DA +F+ MP + + +WN++++
Sbjct: 275 LGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLG 334
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYML 119
E L LF ++ + D IT + + AC ++ + G T+ G+ +
Sbjct: 335 VHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIP 394
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSL 154
+ +YA+ +DEA + E+GS N S+
Sbjct: 395 EHYECMTELYARSNNLDEAFKSTKEVGSLANSPSI 429
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
N ++ R +H I+++ ++ D + LI +YS G + A++ FY+ TW +I
Sbjct: 39 NFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIR 98
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
GL +AL ++ M +GI ++ TF V+ AC
Sbjct: 99 ANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKAC 135
>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14050, mitochondrial-like [Cucumis sativus]
Length = 611
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/467 (32%), Positives = 257/467 (55%), Gaps = 17/467 (3%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LH+ + K D + N+L+ YG+ L A LFD+MP RD SW ++++ +N
Sbjct: 25 LHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALI 84
Query: 65 SGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN--- 120
L + + +G+ D + AC+ L L GK VH +ML+
Sbjct: 85 PRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA-------RFMLSXFC 137
Query: 121 ----MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
++++L+ MY KC + DEA +FD + +N VS +I+GY A ++F +
Sbjct: 138 DDEVVKSSLIDMYTKCGQPDEARAVFDSI-LFKNSVSWTSMISGYARSGRKCEAMDLFLQ 196
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSNLQY 235
+++ W +++ G +++ + LF +M EG+ D V+ SV+ C++L+ L+
Sbjct: 197 APVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLEL 256
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G+ +H ++ F+ AL+DMY+KC + A FY+ KDV++WT++I G A
Sbjct: 257 GKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQ 316
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
+G EAL ++ +M IKPNE TFV +L AC H+GL++ G +LFR M Y + P+++
Sbjct: 317 HGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQ 376
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
H+ CL+DLLSR+G L +AE + +P + ++ +LLSAC+ ++ ++G ++A+ ++ L
Sbjct: 377 HYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDL 436
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ Y+LLSN YA W V++ R+ M ++ RK+PG S ID
Sbjct: 437 KPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDF 483
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 116/264 (43%), Gaps = 39/264 (14%)
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
CAR + +H K G + + N LL +Y KC + +AL+LFDEM +R
Sbjct: 13 CARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNR----- 67
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID-EG 212
D V W S++ KA P L + M +G
Sbjct: 68 ---------------------------DHVSWASILTAHNKALIPRRTLSMLNTMFTHDG 100
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ PD V ++ ACSSL L+ G+ VH + + D VK++LIDMY+KCG +EA
Sbjct: 101 LQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEAR 160
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F K+ V+WT+MI G A G EA+ +F Q + N ++ ++++ SG
Sbjct: 161 AVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVR----NLFSWTALISGLIQSG 216
Query: 333 LITEGCQLFRRMG--GVYRVQPTI 354
LF M G+ V P +
Sbjct: 217 HGIYSFSLFNEMRREGIDIVDPLV 240
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 152/367 (41%), Gaps = 100/367 (27%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+GK +HA + D V +SLI Y + +AR +FD + F++ SW +++S Y
Sbjct: 123 LGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYA 182
Query: 60 ------------------NDFS---------DSGEVLI---LFKQLIFEGI-VADKITLV 88
N FS SG + LF ++ EGI + D + L
Sbjct: 183 RSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLS 242
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ CA L L GK +H +G E L + NAL+ MYAKC +
Sbjct: 243 SVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSD-------------- 288
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+ A+++F + KD++ W S++ G + + EEAL L+ +M
Sbjct: 289 ------------------ILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEM 330
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGS 267
+ + P+E V +L ACS + GR + R + + +I T L+D+ S+ G
Sbjct: 331 VLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGH 390
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
L+EA E L +++ KP+E T+ S+L+A
Sbjct: 391 LDEA-------------------ENL---------------LDKIPFKPDEPTWASLLSA 416
Query: 328 C-RHSGL 333
C RH+ L
Sbjct: 417 CMRHNNL 423
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 86/180 (47%), Gaps = 1/180 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V +S +++ N+L+ Y + + A+ +F +MP +DV SW +++
Sbjct: 256 LGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTA 315
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYML 119
+ E L L+ +++ I +++T V L AC+ + G+ + T + L
Sbjct: 316 QHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSL 375
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
LL + ++ +DEA L D++ + + + L++ + +++ + D ++D
Sbjct: 376 QHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLD 435
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
L C+ + +H I++ + + + L+D+Y KCG + +AL F + +D
Sbjct: 10 LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
V+W +++ + L + M G++P+ F ++ AC G + G Q+
Sbjct: 70 VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129
Query: 343 R 343
R
Sbjct: 130 R 130
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/455 (33%), Positives = 247/455 (54%), Gaps = 32/455 (7%)
Query: 8 HVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGE 67
++ + D+ +G ++I Y + AR +FD+M ++V SW+ +++ Y +
Sbjct: 156 YIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRK 215
Query: 68 VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLL 127
L LF+ ++ G++ DKITL L AC+ L+ L G+ +H K GL+ + AL+
Sbjct: 216 ALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVD 275
Query: 128 MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRS 187
MY KC+E+++A R +FD++ ++D+V W
Sbjct: 276 MYGKCREIEDA--------------------------------RFLFDKMPERDLVTWTV 303
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247
M+ G + E+L LF KM +EGV PD+ MV+V+ AC+ L + R + +I +
Sbjct: 304 MIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKK 363
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
D + TA+IDM++KCG +E A F + + K+V++W+ MI +G G +AL +F
Sbjct: 364 FQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFP 423
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367
M R GI PN+ T VS+L AC H+GL+ EG + F M Y V+ ++H+ C+VDLL RA
Sbjct: 424 MMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRA 483
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427
G L +A + I+ M E + A L AC T+ + L +K A ++++L Q+ Y+LLS
Sbjct: 484 GRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLS 543
Query: 428 NFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
N YA G W +VA+ R M + + +K PG + I++
Sbjct: 544 NIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEV 578
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 208/408 (50%), Gaps = 60/408 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +H V K LD D +V +L+ Y + DAR LFDKM RD+ +W ++ Y
Sbjct: 48 MGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYA 107
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + E L+LF+++ EG+V DK+ +V + ACA+L +H + + Y + + +
Sbjct: 108 ECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVI 167
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ A++ MYAKC V+ ARE+FD + +K
Sbjct: 168 LGTAMIDMYAKCG--------------------------------CVESAREIFDRMEEK 195
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+++ W +M+ Q +AL+LF+ M+ G+ PD+ + S+L ACS L NLQ GRL+H
Sbjct: 196 NVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIH 255
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + + D FV AL+DMY KC +E+A F K +D+VTWT MI G A G N
Sbjct: 256 HIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNAN 315
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV-- 358
E+L +F +M +G+ P++ V+V+ AC ++G +++ + TI+ ++
Sbjct: 316 ESLVLFDKMREEGVVPDKVAMVTVVFAC-------------AKLGAMHKAR-TIDDYIQR 361
Query: 359 -----------CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
++D+ ++ G + A E M E IS+ A+++A
Sbjct: 362 KKFQLDVILGTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAA 408
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 155/315 (49%), Gaps = 37/315 (11%)
Query: 72 FKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK 131
F++LI G D TL + AC L+ L G+ +H K GL+ + AL+ MY K
Sbjct: 18 FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVK 77
Query: 132 CKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHG 191
C+E+++A LFD+M R D+V W M+ G
Sbjct: 78 CREIEDARFLFDKMQER--------------------------------DLVTWTVMIGG 105
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
+ + E+L LF+KM +EGV PD+ MV+V+ AC+ L + R++ +I + D
Sbjct: 106 YAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLD 165
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
+ TA+IDMY+KCG +E A F + + K+V++W+ MI +G G +AL +F M
Sbjct: 166 VILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLS 225
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC--LVDLLSRAGL 369
G+ P++ T S+L AC + G +L + VY+ ++HFVC LVD+ +
Sbjct: 226 SGMLPDKITLASLLYACSDLKNLQMG-RLIHHI--VYKFGLDLDHFVCAALVDMYGKCRE 282
Query: 370 LYQAEEFIKIMPAED 384
+ A MP D
Sbjct: 283 IEDARFLFDKMPERD 297
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 139/273 (50%), Gaps = 33/273 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +H V K LD D +V +L+ YG+ DAR LFDKMP RD+ +W ++ Y
Sbjct: 250 MGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYA 309
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ ++ E L+LF ++ EG+V DK+ +V + ACA+L +H +T+ Y + + +
Sbjct: 310 ECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVI 369
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ A++ M+AKC ++ A +FD M +N++S + +I Y
Sbjct: 370 LGTAMIDMHAKCGCVESAREIFDRM-EEKNVISWSAMIAAY------------------- 409
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
HG Q +AL+LF M+ G+ P++ +VS+L ACS ++ G
Sbjct: 410 -------GYHG-----QGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFF 457
Query: 241 RFILQN-NITQDAFVKTALIDMYSKCGSLEEAL 272
+ ++ ++ D T ++D+ + G L+EAL
Sbjct: 458 SLMWEDYSVRADVKHYTCVVDLLGRAGRLDEAL 490
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 7/246 (2%)
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247
M+ G K F+++I G PD + V+ AC L NLQ GRL+H + +
Sbjct: 1 MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
+ D FV AL+DMY KC +E+A F K +D+VTWT MI G A G NE+L +F
Sbjct: 61 LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367
+M +G+ P++ V+V+ AC G + + ++ + Q + ++D+ ++
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKA-RIIDDYIQRKKFQLDVILGTAMIDMYAKC 179
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN--NMMKLGNQSHEAYVL 425
G + A E M E IS+ A+++A Y G+K + MM + L
Sbjct: 180 GCVESAREIFDRME-EKNVISWSAMIAA---YGYHGQGRKALDLFRMMLSSGMLPDKITL 235
Query: 426 LSNFYA 431
S YA
Sbjct: 236 ASLLYA 241
>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Brachypodium distachyon]
Length = 773
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/464 (32%), Positives = 248/464 (53%), Gaps = 36/464 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK HA + + + + NSLI YG+ L A +F + RD SW+ +++ Y
Sbjct: 341 GKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCK 400
Query: 62 FSDSGEVLILFKQLI---FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ L L++Q+ + + D +LV S+C+RL +L G++VHCY+ K L+
Sbjct: 401 AGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSIKCLLDEN 460
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ N+L+ MY +C + A ++F RR
Sbjct: 461 -SITNSLIGMYGRCGNFELACKIFAVAKLRR----------------------------- 490
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D+V W +++ + +AL L+ +M+ E V P+ +++V+SAC++L+ L++G L
Sbjct: 491 --DVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGEL 548
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++ + D + TAL+DMY+KCG L A F +DVVTW MI G +G
Sbjct: 549 LHSYVKNMGLESDVSISTALVDMYTKCGQLGTARGIFDSMLQRDVVTWNVMISGYGMHGE 608
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
N+AL++F +ME IKPN TF+++L+AC H+GL+ EG +LF RMGG YR++P ++H+
Sbjct: 609 ANQALKLFSEMEAGSIKPNSLTFLAILSACCHAGLVDEGRKLFIRMGG-YRLEPNLKHYA 667
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDLL ++GLL +AE+ + MP + + LLSAC + F++G +VA +
Sbjct: 668 CMVDLLGKSGLLQEAEDLVLAMPIKPDGGVWGTLLSACKVHDNFEMGLRVAKKAFSSDPR 727
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ Y+L+SN Y W E+ + R MK K G S +D+
Sbjct: 728 NDGYYILMSNSYGSAEKWDEIEKLRDTMKNYGVEKGVGWSAVDV 771
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 157/336 (46%), Gaps = 44/336 (13%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LHA + + L S L+ Y L A + F P D WN+L+ ++ SD
Sbjct: 34 LHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCASD 93
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL---EYMLNM 121
L +++ G + T + SA A L L G +VH Y+ K GL + + +
Sbjct: 94 FDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSVAV 153
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
++L+ MYA+C + +A++LFDE +V++D
Sbjct: 154 SSSLVYMYARCGSLGDAVKLFDE--------------------------------MVERD 181
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMI----DEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+V W +++ GCV+ + + + +MI D G P+ M S L AC L L GR
Sbjct: 182 VVAWTAVVSGCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGR 241
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H + ++ I A V +AL MYSKC E+A + F + KDVV+WT +I G
Sbjct: 242 CLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCRRG 301
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
L EA+ +F +ME+ G++P+E VL +C SGL
Sbjct: 302 LAREAVELFQEMEQSGLQPDE-----VLVSCVLSGL 332
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 191/419 (45%), Gaps = 47/419 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH + K + V ++L Y + + DA +LF ++ +DV SW L+ Y
Sbjct: 240 GRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCR 299
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + LF+++ G+ D++ + + S ++ GK H + + +
Sbjct: 300 RGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVIIRRNFGDSVLI 359
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ MY K ELVD+A VF + +D
Sbjct: 360 ANSLISMYGK--------------------------------FELVDVAGTVFGMLHQRD 387
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMI----DEGVTPDEEVMVSVLSACSSLSNLQYGR 237
W M+ G KA + LEL+++M DE + D +VS +S+CS L L+ G+
Sbjct: 388 DESWSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLC-DITSLVSAISSCSRLGRLRLGQ 446
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-KDVVTWTTMIEGLANY 296
VH + ++ + +++ + +LI MY +CG+ E A F +DVVTW +I ++
Sbjct: 447 SVHCYSIKCLLDENS-ITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHV 505
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL---FRRMGGVYRVQPT 353
G N+AL ++ QM + +KPN +T ++V++AC + + G L + MG ++
Sbjct: 506 GRSNDALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLHSYVKNMG----LESD 561
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
+ LVD+ ++ G L A M D +++ ++S + E + K+ + M
Sbjct: 562 VSISTALVDMYTKCGQLGTARGIFDSMLQRD-VVTWNVMISGYGMHGEANQALKLFSEM 619
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 154/347 (44%), Gaps = 42/347 (12%)
Query: 1 MGKGLHAHVTKTAL---DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS 57
+G +H++ K L D + V +SL++ Y R DA LFD+M RDV +W ++S
Sbjct: 131 VGTSVHSYSVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVS 190
Query: 58 IYNDFSDSGEVLILFKQLIF----EGIVADKITLVILFSACARLEKLHYGKTVHCYATKV 113
+ G+ + Q+I G + T+ AC L +L G+ +H YA K
Sbjct: 191 GCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKE 250
Query: 114 GLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
G+ + +AL MY+KC ++A LF E+ + +++VS LI Y L
Sbjct: 251 GIRDCALVVSALFSMYSKCDMTEDACILFPEL-TEKDVVSWTGLIGAYCRRGLA------ 303
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
EA+ELF++M G+ PDE ++ VLS S +N+
Sbjct: 304 -------------------------REAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANV 338
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
G+ H I++ N + +LI MY K ++ A F +D +W+ M+ G
Sbjct: 339 NRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGY 398
Query: 294 ANYGLGNEALRVFYQMERKGIKP---NEATFVSVLAACRHSGLITEG 337
GL + L ++ QM+ + + + VS +++C G + G
Sbjct: 399 CKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLG 445
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 135/274 (49%), Gaps = 38/274 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR-DVGSWNTLMSIY 59
+G+ +H + K LD + + NSLI YGR F A +F R DV +WN L+S Y
Sbjct: 444 LGQSVHCYSIKCLLDEN-SITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSY 502
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ S + L L+ Q++ E + + TL+ + SACA L L +G+ +H Y +GLE +
Sbjct: 503 SHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLHSYVKNMGLESDV 562
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ AL+ MY KC ++ A +FD M +R++V+ N++I+GY
Sbjct: 563 SISTALVDMYTKCGQLGTARGIFDSM-LQRDVVTWNVMISGY------------------ 603
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
MHG + +AL+LF +M + P+ +++LSAC + GR +
Sbjct: 604 --------GMHG-----EANQALKLFSEMEAGSIKPNSLTFLAILSACCHAGLVDEGRKL 650
Query: 240 HRFILQNNITQDAFVK--TALIDMYSKCGSLEEA 271
FI + +K ++D+ K G L+EA
Sbjct: 651 --FIRMGGYRLEPNLKHYACMVDLLGKSGLLQEA 682
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 7/188 (3%)
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
L++ Y L A F D LW S++ A + AL ++M G P
Sbjct: 53 LVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCASDFDSALSAHRRMRASGARPS 112
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ---DAFVKTALIDMYSKCGSLEEALV 273
SA + L+ L G VH + ++ + V ++L+ MY++CGSL +A+
Sbjct: 113 RFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAVK 172
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER----KGIKPNEATFVSVLAACR 329
F + +DVV WT ++ G G + + QM R G +PN T S L AC
Sbjct: 173 LFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACG 232
Query: 330 HSGLITEG 337
G ++ G
Sbjct: 233 VLGELSAG 240
>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
Length = 590
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 165/465 (35%), Positives = 255/465 (54%), Gaps = 13/465 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + KT SD+++ N LI Y + AR +FD+MP RD S+N+++ Y
Sbjct: 125 GTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVK 184
Query: 62 ---FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+GE +F+ + +K L+ S + G V E
Sbjct: 185 CGLVESAGE--------LFDLMPREKRNLITWNSMIGGYAQRADGVDVAEKLFDEMPEKD 236
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L N+++ Y K +++A LF+ M RR++V+ I+I+GY + LV +A+ +FD++
Sbjct: 237 LISWNSMIGGYVKHGRIEDAKGLFNVM-PRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMP 295
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGR 237
+D+V + SMM G V+ + EALE+F M E +TPDE +V VLSA + L L
Sbjct: 296 HRDVVAYNSMMSGYVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAI 355
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H +I++ + ALIDMYSKCGS++ A+ F + K + W MI GLA +G
Sbjct: 356 DMHLYIVEKQFPLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHG 415
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
LG A + +Q+ER+ IKP+ TFV VL AC HSGL+ EG F M ++++P ++H+
Sbjct: 416 LGESAFDMLFQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 475
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VD+L+R+G + A I+ MP E + ++ L+AC + EF+ G+ VA +++ G
Sbjct: 476 GCMVDILARSGSIKLARNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILXGG 535
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ +YVLLSN YA G W +V R MKE K PG S I+L
Sbjct: 536 YNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWIEL 580
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 164/328 (50%), Gaps = 18/328 (5%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN ++ ++ D + L L ++ + DK +L + AC+RL + G VH +
Sbjct: 74 WNVVIKSHSHGVDPRKALFLLCLMLESSVPVDKFSLSLALKACSRLGFVKEGTQVHGFLI 133
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K G L ++N L+ +Y KC + A ++FD M R+ VS N +I+GY+ LV+ A
Sbjct: 134 KTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRM-PERDSVSYNSMIDGYVKCGLVESAG 192
Query: 172 EVFDEIV--DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
E+FD + ++++ W SM+ G Q + +++ +K+ DE P+++ ++S S
Sbjct: 193 ELFDLMPREKRNLITWNSMIGG---YAQRADGVDVAEKLFDE--MPEKD----LISWNSM 243
Query: 230 LSN-LQYGRLVHRFILQNNITQDAFVKTA-LIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+ +++GR+ L N + + V A +ID Y K G + A F + +DVV +
Sbjct: 244 IGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYN 303
Query: 288 TMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
+M+ G EAL VF ME++ + P+E + V VL+A G +++ + +
Sbjct: 304 SMMSGYVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYI-- 361
Query: 347 VYRVQPTIEHF-VCLVDLLSRAGLLYQA 373
V + P V L+D+ S+ G + A
Sbjct: 362 VEKQFPLSGKLGVALIDMYSKCGSIQHA 389
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 123/284 (43%), Gaps = 40/284 (14%)
Query: 166 LVDLAREVFDEI------VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
L + AR VF E +D LW ++ P +AL L M++ V D+
Sbjct: 49 LAEFARCVFHEHHVSSSGEVEDPFLWNVVIKSHSHGVDPRKALFLLCLMLESSVPVDKFS 108
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279
+ L ACS L ++ G VH F+++ D F++ LI +Y KCG L A F +
Sbjct: 109 LSLALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMP 168
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA--ACRHSGL-ITE 336
+D V++ +MI+G GL A +F M R+ K N T+ S++ A R G+ + E
Sbjct: 169 ERDSVSYNSMIDGYVKCGLVESAGELFDLMPRE--KRNLITWNSMIGGYAQRADGVDVAE 226
Query: 337 GCQLFRRMG------------------------GVYRVQPT--IEHFVCLVDLLSRAGLL 370
+LF M G++ V P + + ++D + GL+
Sbjct: 227 --KLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLV 284
Query: 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+ A+ MP D ++Y +++S + +V N+M K
Sbjct: 285 HVAKTLFDQMPHRD-VVAYNSMMSGYVQNRYHMEALEVFNHMEK 327
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/464 (33%), Positives = 259/464 (55%), Gaps = 6/464 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLI----HFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
K + +H+T TA D Y +I H R +LF R LF + + WNT+M
Sbjct: 28 KQIQSHLTVTATLKDPYAAAKIISLHAHSNARSSLFYAER-LFLCLQNKSTFIWNTMMQA 86
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ + +++ L+K ++ + + T + AC + L G H K G E
Sbjct: 87 FVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGWESY 146
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++N L+ +YA C MD A +FD M +R++V+ LI+GY++ V +ARE+FD +
Sbjct: 147 DFVQNGLIHLYANCGFMDLARNMFD-MSIKRDVVTWTCLISGYLNSGQVLIARELFDRMP 205
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+K+ V W +++ G V+ +EALE+F M G + +V L+AC+ L L GR
Sbjct: 206 EKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQGRW 265
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++ +++++ D + TALIDMY+KCG +E A F + D +DV +T +I GLAN+
Sbjct: 266 IHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANHDK 325
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
A+ +F +M+ +G+ PNE TFV VL AC G++ EG ++F M Y ++P I+H+
Sbjct: 326 SEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQHYG 385
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
CLVDLL RAG + +A++ ++ MP + + ALL AC + + LG+++ +++++
Sbjct: 386 CLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGALLDACRVHGDVQLGEEMVDSLVQRCLD 445
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+VLLSN YA W + ++ R+ M++ RK PG S I++
Sbjct: 446 HGGVHVLLSNMYASADKWEDASKIRKKMEDKNIRKLPGCSSIEV 489
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 130/309 (42%), Gaps = 76/309 (24%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGR------------MALFTD------------ 36
MG H V K +S +V N LIH Y M++ D
Sbjct: 130 MGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYL 189
Query: 37 -------ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
AR LFD+MP ++ SW L++ Y E L +F + G ++ ++V
Sbjct: 190 NSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVG 249
Query: 90 LFSACARLEKLHYGKTVHCYATK--VGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ACA L L G+ +H Y + + L+ ML AL+ MYAKC ++ A +FDEM
Sbjct: 250 ALTACAFLGALDQGRWIHAYVKRHHMSLDRMLG--TALIDMYAKCGCIEMACSVFDEMD- 306
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
D+D+ + ++ G + E A++LF +
Sbjct: 307 -------------------------------DRDVYAFTCLISGLANHDKSEAAIDLFNR 335
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYG-----RLVHRFILQNNITQDAFVKTALIDMY 262
M DEGV P+E V VL+ACS + + G + +R++++ I L+D+
Sbjct: 336 MQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQH----YGCLVDLL 391
Query: 263 SKCGSLEEA 271
+ G +EEA
Sbjct: 392 GRAGKIEEA 400
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 112/239 (46%), Gaps = 24/239 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA+V + + D +G +LI Y + A +FD+M RDV ++ L+S +
Sbjct: 263 GRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLAN 322
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYMLN 120
S + LF ++ EG+V +++T V + +AC+R+ + G + + + +E +
Sbjct: 323 HDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQ 382
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
L+ + + +++EA ++ EM + + +L L++ V L E+ D +V
Sbjct: 383 HYGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGALLDACRVHGDVQLGEEMVDSLVQ- 441
Query: 181 DIVLWRSMMHGCV---------KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230
R + HG V A + E+A ++ KKM D+ + L CSS+
Sbjct: 442 -----RCLDHGGVHVLLSNMYASADKWEDASKIRKKMEDKNIRK--------LPGCSSI 487
>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14050, mitochondrial; Flags: Precursor
gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/469 (33%), Positives = 268/469 (57%), Gaps = 12/469 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LHAH+ K + + N+L++ YG+ + A +FD+MP RD +W ++++ N
Sbjct: 22 AKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQ 81
Query: 62 FSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ SG+ L +F + + D L ACA L + +G+ VHC+ + EY +
Sbjct: 82 ANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHF--IVSEYAND 139
Query: 121 --MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++++L+ MYAKC ++ A +FD + +N +S +++GY + A E+F +
Sbjct: 140 EVVKSSLVDMYAKCGLLNSAKAVFDSI-RVKNTISWTAMVSGYAKSGRKEEALELFRILP 198
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP-DEEVMVSVLSACSSLSNLQYGR 237
K++ W +++ G V++ + EA +F +M E V D V+ S++ AC++L+ GR
Sbjct: 199 VKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGR 258
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH ++ F+ ALIDMY+KC + A F + +DVV+WT++I G+A +G
Sbjct: 259 QVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHG 318
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+AL ++ M G+KPNE TFV ++ AC H G + +G +LF+ M Y ++P+++H+
Sbjct: 319 QAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHY 378
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM---K 414
CL+DLL R+GLL +AE I MP ++ ALLSAC +G ++A++++ K
Sbjct: 379 TCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFK 438
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
L + S Y+LLSN YA W +V+EARR + E++ RK PG+S ++++
Sbjct: 439 LKDPS--TYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVR 485
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 110/252 (43%), Gaps = 37/252 (14%)
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
CAR L K +H + K+G+ + N L+ +Y KC AL++FDEM R
Sbjct: 13 CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHR----- 67
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL-ELFKKMIDEG 212
D + W S++ +A + L G
Sbjct: 68 ---------------------------DHIAWASVLTALNQANLSGKTLSVFSSVGSSSG 100
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ PD+ V +++ AC++L ++ +GR VH + + D VK++L+DMY+KCG L A
Sbjct: 101 LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAK 160
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F K+ ++WT M+ G A G EAL +F + K N ++ ++++ SG
Sbjct: 161 AVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVK----NLYSWTALISGFVQSG 216
Query: 333 LITEGCQLFRRM 344
E +F M
Sbjct: 217 KGLEAFSVFTEM 228
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 34/204 (16%)
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
L C+ L + +H I++ I Q + L+++Y KCG+ AL F + +D
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69
Query: 284 VTWTTMIEGLANYGLGNEAL-RVFYQMERKGIKPNEATFVSVLAACRHSGLITEG----- 337
+ W +++ L L + L G++P++ F +++ AC + G I G
Sbjct: 70 IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129
Query: 338 -----------------------CQLFRRMGGVY---RVQPTIEHFVCLVDLLSRAGLLY 371
C L V+ RV+ TI + +V +++G
Sbjct: 130 HFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTIS-WTAMVSGYAKSGRKE 188
Query: 372 QAEEFIKIMPAEDKFISYKALLSA 395
+A E +I+P ++ + S+ AL+S
Sbjct: 189 EALELFRILPVKNLY-SWTALISG 211
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/464 (33%), Positives = 243/464 (52%), Gaps = 34/464 (7%)
Query: 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +HAH+ + LD+ + + N +++ Y + DAR +FD+MP +D+ +W L++ ++
Sbjct: 106 GRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFS 165
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + L+LF Q++ G+ + TL L A L G +H + K G + +
Sbjct: 166 QNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVY 225
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +AL+ MYA+C MD A FD M + K
Sbjct: 226 VGSALVDMYARCGHMDAAQLAFDGMPT--------------------------------K 253
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
V W +++ G + + E AL L KM + P SV SAC+S+ L+ G+ VH
Sbjct: 254 SEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVH 313
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++++ + AF+ L+DMY+K GS+++A F + DVV+W TM+ G A +GLG
Sbjct: 314 AHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGK 373
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
E L F QM R GI+PNE +F+ VL AC HSGL+ EG F M Y+V+P + H+V
Sbjct: 374 ETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTF 432
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL R GLL +AE FI+ MP E + ALL AC + +LG A +L
Sbjct: 433 VDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDS 492
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+LLSN YA G W +VA+ R+ MKE +K+P S +++++
Sbjct: 493 GPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIEN 536
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 172/367 (46%), Gaps = 49/367 (13%)
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLNM 121
SD G L + +V D L C RL K+ G+ VH + L+ L +
Sbjct: 66 SDGGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVL 125
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+N ++ MYAKC +D+A R+FDEM + KD
Sbjct: 126 QNIIVNMYAKCGCLDDARRMFDEMPT--------------------------------KD 153
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G + +P +AL LF +M+ G+ P+ + S+L A S L G +H
Sbjct: 154 MVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHA 213
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F L+ +V +AL+DMY++CG ++ A + F K V+W +I G A G G
Sbjct: 214 FCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEH 273
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM--GGVYRVQPTIEHFV- 358
AL + ++M+RK +P T+ SV +AC G + +G + M G+ + F+
Sbjct: 274 ALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIA-----FIG 328
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN---NMMK 414
L+D+ ++AG + A+ + D +S+ +L+ C ++ LGK+ + M++
Sbjct: 329 NTLLDMYAKAGSIDDAKRVFDRLVKPD-VVSWNTMLTGC---AQHGLGKETLDRFEQMLR 384
Query: 415 LGNQSHE 421
+G + +E
Sbjct: 385 IGIEPNE 391
>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Brachypodium distachyon]
Length = 940
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 156/461 (33%), Positives = 243/461 (52%), Gaps = 33/461 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA+ K LDSD VGN+L+ Y + + +FD+M +D SW T+++ Y
Sbjct: 385 GKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQ 444
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E L +F++ EGI D + + + AC+ LE + K +HCYA + GL ++ +
Sbjct: 445 SSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLV-V 503
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+N ++ +Y +C E+ +L++F+ + KD
Sbjct: 504 KNRIIDIYGECGEVYHSLKMFET--------------------------------VEQKD 531
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W SM++ + EAL LF +M V PD +VS+L A LS+L G+ VH
Sbjct: 532 IVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHG 591
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F+++ N + + ++L+DMYS CGSL AL F CKD+V WT MI +G G +
Sbjct: 592 FLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQ 651
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ +F +M + G+ P+ +F+++L AC HS L+ EG M YR++P EH+ C+V
Sbjct: 652 AIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVV 711
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R+G +A EFIK MP + K + + +LL AC + +L AN +++L +
Sbjct: 712 DLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPG 771
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVL+SN +A G W E R + E RK P S I++
Sbjct: 772 NYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEI 812
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 158/341 (46%), Gaps = 37/341 (10%)
Query: 2 GKGLHAHVTKTAL--DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
G +HAH T D ++ L+ YG+ DAR+LFD M R V SWN L+ Y
Sbjct: 77 GVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAY 136
Query: 60 NDFSDSGEVLILFKQLIFE---GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
+ E L +++ + G+ D TL + A G VH A K GL+
Sbjct: 137 LSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLD 196
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ NAL+ MYAKC +D A+R+F+ M R++ S
Sbjct: 197 RSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVAS----------------------- 233
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
W SM+ GC++ +AL+LF+ M ++ + V VL C+ L+ L G
Sbjct: 234 --------WNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLG 285
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
R +H +L++ ++ AL+ MY+KCG ++ AL F + D KD ++W +M+
Sbjct: 286 RELHAALLKSG-SEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQN 344
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
GL EA+ +M R G +P+ A VS+ +A H G + G
Sbjct: 345 GLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNG 385
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/336 (30%), Positives = 157/336 (46%), Gaps = 38/336 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM-PFRDVGSWNTLMSIYN 60
G +H K LD +V N+LI Y + + A +F+ M RDV SWN+++S
Sbjct: 183 GCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCL 242
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L LF+ + + + T V + C L +L+ G+ +H K G E +N
Sbjct: 243 QNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSE--VN 300
Query: 121 ME-NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ NALL+MY KC +D ALR VF EI +
Sbjct: 301 IQCNALLVMYTKCGRVDSALR--------------------------------VFREIDE 328
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KD + W SM+ V+ EA+E +M+ G PD +VS+ SA L L G+ V
Sbjct: 329 KDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEV 388
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + ++ + D V L+DMY KC +E + F + KD ++WTT+I A
Sbjct: 389 HAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRH 448
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335
EAL +F + +++GIK + S+L AC SGL T
Sbjct: 449 IEALEIFREAQKEGIKVDPMMIGSILEAC--SGLET 482
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 158/373 (42%), Gaps = 52/373 (13%)
Query: 103 GKTVHCYATKVG-LEYMLN-MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
G VH +A G LE + LL MY KC + +A LFD M SR
Sbjct: 77 GVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSR------------ 124
Query: 161 YIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM---IDEGVTPDE 217
VF W +++ + + EAL +++ M GV PD
Sbjct: 125 -----------TVFS---------WNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDG 164
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF-Y 276
+ SVL A + + G VH +++ + + FV ALI MY+KCG L+ A+ F
Sbjct: 165 CTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFEL 224
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
D +DV +W +MI G G+ +AL +F M+R + N T V VL C +
Sbjct: 225 MHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNL 284
Query: 337 GCQL---FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
G +L + G +Q L+ + ++ G + A + + +D +IS+ ++L
Sbjct: 285 GRELHAALLKSGSEVNIQCN-----ALLVMYTKCGRVDSALRVFREIDEKD-YISWNSML 338
Query: 394 SACITYSEFDLGKKVANNMMKLGNQS-HEAYVLLSNFYALEGHW---TEVAEARRNMKEL 449
S + + + + M++ G Q H V LS+ G W + A + L
Sbjct: 339 SCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLG-WLLNGKEVHAYAIKQRL 397
Query: 450 QTRKKPGNSIIDL 462
+ + GN+++D+
Sbjct: 398 DSDTQVGNTLMDM 410
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 11/210 (5%)
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ--DAFVKTA 257
+AL L G +P +E VL ++ + G VH + + D F+ T
Sbjct: 42 QALRLLTSQT-PGRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATK 100
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME---RKGI 314
L+ MY KCG + +A + F + V +W +I + G EAL V+ M G+
Sbjct: 101 LLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGV 160
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQ 372
P+ T SVL A G GC++ G + FV L+ + ++ G+L
Sbjct: 161 APDGCTLASVLKASGVEGDGRCGCEVH---GLAVKHGLDRSTFVANALIAMYAKCGILDS 217
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEF 402
A ++M S+ +++S C+ F
Sbjct: 218 AMRVFELMHDGRDVASWNSMISGCLQNGMF 247
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 249/462 (53%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH+ K+ L S+I V NS++ YG+ ++A +FD+M RD SWN +++ +
Sbjct: 397 GRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQ 456
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L LF ++ + D+ T + AC+ + L+ G +H K GL +
Sbjct: 457 NGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFV 516
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MY KC ++EA +++ D I +
Sbjct: 517 GGALIDMYCKCGMIEEA--------------------------------KKIHDRIEQQT 544
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G K E+A F +M+ V PD VL AC++L+++ G+ +H
Sbjct: 545 MVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHG 604
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I++ + D ++ + L+DMYSKCG+++++ + F K KD VTW MI G A +GLG E
Sbjct: 605 QIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEE 664
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL F +M+ + ++PN ATFVS+L AC H G I +G F M Y ++P IEH+ C++
Sbjct: 665 ALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMI 724
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D++ R+G + +A + I+ MP E + ++ LLS C + ++ +K N +++L +
Sbjct: 725 DIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAILQLEPEDSS 784
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A +LLSN YA G W +V+E R+ M+ + +K+PG S I++K
Sbjct: 785 ACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVK 826
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/410 (28%), Positives = 196/410 (47%), Gaps = 41/410 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LHAH K SDI VG + + Y + DA+ +F+ +P + +N ++
Sbjct: 295 VGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCV 354
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L F+ L+ G+ ++I+L FSACA ++ G+ +H + K L +
Sbjct: 355 RNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNIC 414
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N++L MY KC+ + EA +FDEM RR+ VS N +I +
Sbjct: 415 VANSILDMYGKCEALSEACCMFDEM-ERRDAVSWNAVIAAH------------------- 454
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ EE L LF M+ + PD+ SVL ACSS L G +H
Sbjct: 455 ------------EQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIH 502
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I+++ + D+FV ALIDMY KCG +EEA + + + +V+W +I G
Sbjct: 503 NRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSE 562
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV-- 358
+A FY+M + +KP+ T+ VL AC + + G Q+ G + +++ + ++
Sbjct: 563 DAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIH---GQIIKLELHSDVYITS 619
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
LVD+ S+ G + + + P +D F+++ A++ Y++ LG++
Sbjct: 620 TLVDMYSKCGNMQDSALVFEKAPNKD-FVTWNAMICG---YAQHGLGEEA 665
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/454 (22%), Positives = 197/454 (43%), Gaps = 77/454 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G +H + + D+ G++L+ Y + D+ +F ++P ++ W+ +++ +
Sbjct: 194 LGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCV 253
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
ND G L LFK++ GI + +F +CA L L G +H +A K
Sbjct: 254 QNDEHILG--LELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSD 311
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + A L MYAKC + +A R+F+ +
Sbjct: 312 ITVGTATLDMYAKCGSLADAQRIFNSLPKH------------------------------ 341
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+ + +++ GCV+ ++ EAL+ F+ ++ G+ +E + SAC+S+ GR
Sbjct: 342 --SLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQ 399
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H +++ + + V +++DMY KC +L EA F + + +D V+W +I G
Sbjct: 400 LHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGN 459
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
E L +F M R ++P++ T+ SVL AC + G ++ R + + ++ FV
Sbjct: 460 EEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNR---IIKSGLGLDSFV 516
Query: 359 --CLVDLLSRAGLLYQAE-----------------------------------EFIKIMP 381
L+D+ + G++ +A+ E +K+
Sbjct: 517 GGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSV 576
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
D F +Y +L AC + LGK++ ++KL
Sbjct: 577 KPDNF-TYAIVLDACANLASVGLGKQIHGQIIKL 609
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 113/430 (26%), Positives = 183/430 (42%), Gaps = 74/430 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK HA + + D+Y+ N L+ Y R + A +F+KM RDV S+NT++S Y D
Sbjct: 62 GKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYAD 121
Query: 62 ----------FSDSGEVLILFKQLIFEGIVA----------------------DKITLVI 89
F D+ + ++ + G + D+ T +
Sbjct: 122 AGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAV 181
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ AC+ LE G VH ++G + +ALL MYAKCK RL D +
Sbjct: 182 VLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCK------RLDDSL---- 231
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
++F EI K+ V W +++ GCV+ + LELFK+M
Sbjct: 232 ----------------------KIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQ 269
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
G+ + + SV +C+ LS L+ G +H L+ + D V TA +DMY+KCGSL
Sbjct: 270 KVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLA 329
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+A F + + +I G G EAL+ F + + G+ NE + +AC
Sbjct: 330 DAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACA 389
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRAGLLYQAEEFIKIMPAEDK 385
+G QL V+ T+ +C ++D+ + L +A M D
Sbjct: 390 SIKGDLDGRQLHS-----LSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDA 444
Query: 386 FISYKALLSA 395
+S+ A+++A
Sbjct: 445 -VSWNAVIAA 453
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 151/313 (48%), Gaps = 4/313 (1%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T + C+ L GK H G + + N L+ MY +C ++ A ++F++M
Sbjct: 45 TFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKM 104
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
S+R+++S N +I+GY D ++LA E F + +D+V W SM+ G ++ + +++++F
Sbjct: 105 -SQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVF 163
Query: 206 KKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
M E V D+ VL ACS L + G VH I++ +D +AL+DMY+K
Sbjct: 164 LDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAK 223
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
C L+++L F + K+ V W+ +I G L +F +M++ GI +++ + SV
Sbjct: 224 CKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASV 283
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
+C + G QL I +D+ ++ G L A+ +P +
Sbjct: 284 FRSCAGLSALKVGTQLHAHALKC-DFGSDITVGTATLDMYAKCGSLADAQRIFNSLP-KH 341
Query: 385 KFISYKALLSACI 397
Y A++ C+
Sbjct: 342 SLQCYNAIIVGCV 354
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K L SD+Y+ ++L+ Y + D+ ++F+K P +D +WN ++ Y
Sbjct: 598 LGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYA 657
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLE 116
E L F+++ E + + T V + ACA + + LHY + T+ GLE
Sbjct: 658 QHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHY---FNAMLTEYGLE 714
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEM 145
+ + ++ + + + EAL+L EM
Sbjct: 715 PQIEHYSCMIDIIGRSGRISEALKLIQEM 743
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 40/229 (17%)
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
++ CS ++L+ G+ H ++ + D ++ L+ MY +C L A F K +D
Sbjct: 49 IIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRD 108
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-------------------------- 316
V+++ TMI G A+ G N A FY ++ +
Sbjct: 109 VISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGR 168
Query: 317 ------NEATFVSVLAAC---RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367
++ TF VL AC GL + L RMG Y+ T L+D+ ++
Sbjct: 169 SEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMG-FYKDVVTGS---ALLDMYAKC 224
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L + + +P ++ ++ + A+++ C+ E LG ++ M K+G
Sbjct: 225 KRLDDSLKIFSEIPVKN-WVCWSAIIAGCVQNDEHILGLELFKEMQKVG 272
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 165/486 (33%), Positives = 259/486 (53%), Gaps = 40/486 (8%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFK 73
L D + N+L+ Y + + + FD+MPFRD S+NT ++ ++ S E L LFK
Sbjct: 85 LKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFK 144
Query: 74 QLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN--MENALLLMYAK 131
++ EG + T+V + +A A+L L YGK +H + + ++ N + NAL MYAK
Sbjct: 145 RMQREGFEPTEYTIVSILNASAQLLDLRYGKQIH--GSIIVRNFLGNVFIWNALTDMYAK 202
Query: 132 CKEMDEALRLFDEMGSRRNIVSLNILINGYI-------------DMEL------------ 166
C E+++A LFD + +++N+VS N++I+GY M L
Sbjct: 203 CGEIEQARWLFDCL-TKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMST 261
Query: 167 ----------VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
VD AR VF E +KDIV W +MM G K + E+AL LF +M+ E + PD
Sbjct: 262 IIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPD 321
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
+ SV+S+C+ L++L +G+ VH + + + V +ALIDMYSKCG +++A F
Sbjct: 322 SYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFN 381
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
++VV+W MI G A G +AL +F M ++ KP+ TF+ +L+AC H I +
Sbjct: 382 LMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQ 441
Query: 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
G + F + + + PT++H+ C+V+LL R G + QA IK M + F+ + LLS C
Sbjct: 442 GQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSIC 501
Query: 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPG 456
T + + A ++ +L Y++LSN YA G W +VA R MK +K G
Sbjct: 502 STKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAG 561
Query: 457 NSIIDL 462
S I++
Sbjct: 562 FSWIEI 567
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 1/221 (0%)
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N LL +YAK ++ +A LFD+M +R+ S N L++ Y + + FD + +
Sbjct: 60 LHNQLLHLYAKFGKLRDAQNLFDKM-LKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFR 118
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V + + + G P+E+LELFK+M EG P E +VS+L+A + L +L+YG+ +H
Sbjct: 119 DSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIH 178
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I+ N + F+ AL DMY+KCG +E+A F K++V+W MI G A G
Sbjct: 179 GSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPE 238
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
+ + + +QM G P++ T +++AA G + E ++F
Sbjct: 239 KCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVF 279
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H L++++ V ++LI Y + DAR +F+ MP R+V SWN ++
Sbjct: 341 GQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQ 400
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L LF+ ++ + D +T + + SAC +HC + G EY ++
Sbjct: 401 NGHDKDALELFENMLQQKFKPDNVTFIGILSAC-----------LHCNWIEQGQEYFDSI 449
Query: 122 EN 123
N
Sbjct: 450 SN 451
>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
Length = 1866
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 160/464 (34%), Positives = 249/464 (53%), Gaps = 33/464 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+ V K ++++V ++L+ Y + A +F++MP R++ SWNT++ +
Sbjct: 149 GEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQ 208
Query: 62 FSDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + FK L+ E + A D+++ +FSACA L +GK VH A K+G+ ++
Sbjct: 209 NKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVY 268
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L MY KC ++ +LF G+R
Sbjct: 269 INNSLSDMYGKCGLFNDVAKLFSNTGAR-------------------------------- 296
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W M+ V E+A F M +G PDE SVL +C++L+ L G L+H
Sbjct: 297 DVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIH 356
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I+++ ++ V ++LI MY+KCGSL +A F +T+ ++VV WT +I +G N
Sbjct: 357 NQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHAN 416
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+ +F QM R+GIKP+ TFVSVL+AC H+G + EG F M V+ + P EH+ C+
Sbjct: 417 WVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACI 476
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLLSRAG L +A+ FI++MP + + ALLSAC +S +GK+VA + L +
Sbjct: 477 VDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNP 536
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVLL N G E E RR M+ + RK+PG S ID+K+
Sbjct: 537 GNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKN 580
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 111/419 (26%), Positives = 192/419 (45%), Gaps = 45/419 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIYNDF 62
+H+ + TAL S ++ N+L++ Y + +LF P ++V SW +L++ F
Sbjct: 49 IHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLITQLTRF 108
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ L F + G+ + T + SAC +G+ +H K G + +
Sbjct: 109 KRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVV 168
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
+AL+ MYAKC +M A ++F+EM RN+VS N +I G++ +L D
Sbjct: 169 SALVDMYAKCCDMLMAEKVFEEMPV-RNLVSWNTMIVGFLQNKLYD-------------- 213
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP-DEEVMVSVLSACSSLSNLQYGRLVHR 241
+A+ FK ++ E +T DE SV SAC++ NL++G+ VH
Sbjct: 214 -----------------QAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHG 256
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
L+ + ++ +L DMY KCG + F T +DVVTW MI +
Sbjct: 257 VALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYED 316
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMGGVYRVQPTIEHFV 358
A F+ M RKG P+EA++ SVL +C + + +G + R G V ++
Sbjct: 317 ACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVA----S 372
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDK-FISYKALLSACITYSEFDLGKKVANNMMKLG 416
L+ + ++ G L A F ED+ + + A+++AC + + ++ M++ G
Sbjct: 373 SLITMYAKCGSLVDA--FQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREG 429
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 44/229 (19%)
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT--DCKDVV 284
CS S ++ +H ++ + F+ L+++Y+KCGS+++ L+ F D K+VV
Sbjct: 39 CSRTS--KHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPDDSKNVV 96
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
+WT++I L + +AL F M R G+ PN TF +VL+AC + G Q+
Sbjct: 97 SWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGEQMH--- 153
Query: 345 GGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPA--------------EDKF-- 386
V++ E FV LVD+ ++ + AE+ + MP ++K
Sbjct: 154 SLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYD 213
Query: 387 -------------------ISYKALLSACITYSEFDLGKKVANNMMKLG 416
+S+ ++ SAC + GK+V +KLG
Sbjct: 214 QAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLG 262
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 142/414 (34%), Positives = 234/414 (56%), Gaps = 4/414 (0%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL--EKLHYGKTVHCY 109
W + ++ Y E F ++ G+ + IT + L SACA E + ++H Y
Sbjct: 60 WTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGY 119
Query: 110 ATKVGLEY-MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168
A K GL+ + + AL+ MY+KC ++ A ++F +G + N VS N ++NG++ ++
Sbjct: 120 ACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVK-NSVSWNTMLNGFMRNGEIE 178
Query: 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS 228
LA ++FDE+ +D + W ++++G +K E+ALE F +M GV D +++VL+AC+
Sbjct: 179 LAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACA 238
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
L L G VHRF++ + + +LIDMYS+CG +E A F K + +V+W +
Sbjct: 239 DLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNS 298
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
+I G A G +E+L F M+++G KP+ ++ L AC H+GL+ +G +LF M V+
Sbjct: 299 IIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVH 358
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
++ P IEH+ C+VDL RAG L A I+ MP + + +LL+AC T+ + +L +++
Sbjct: 359 KITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERL 418
Query: 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ KL + YVLLSN YA G W RR MK +KKPG S +++
Sbjct: 419 MKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEI 472
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 40/248 (16%)
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ--YGRLV 239
IVLW S + + Q EA F +M GV P+ +++LSAC+ + + +
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116
Query: 240 HRFILQNNI-TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK----------------- 281
H + + + T V TALIDMYSKC L A FY K
Sbjct: 117 HGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGE 176
Query: 282 --------------DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
D ++WT +I GL +G +AL F+QM+R G+ + + ++VLAA
Sbjct: 177 IELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAA 236
Query: 328 CRHSGLITEGCQLFR-RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE-FIKIMPAEDK 385
C G +T G + R M ++ I + L+D+ SR G + A + F+K+ A+
Sbjct: 237 CADLGALTLGLWVHRFVMPQEFKDNIKISN--SLIDMYSRCGCIEFARQVFVKM--AKRT 292
Query: 386 FISYKALL 393
+S+ +++
Sbjct: 293 LVSWNSII 300
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/415 (23%), Positives = 162/415 (39%), Gaps = 109/415 (26%)
Query: 5 LHAHVTKTALDSD-IYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFS 63
LH + K LD+ + VG +LI Y + A AR +F + ++ SWNT++ N F
Sbjct: 116 LHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTML---NGFM 172
Query: 64 DSGEV----------------------------------LILFKQLIFEGIVADKITLVI 89
+GE+ L F Q+ G+ AD ++++
Sbjct: 173 RNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIA 232
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +ACA L L G VH + + + + N+L+ MY++C ++ A ++F +M ++R
Sbjct: 233 VLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKM-AKR 291
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+VS N +I G+ D E+LE F M
Sbjct: 292 TLVSWNSIIVGFAVNGFAD-------------------------------ESLEFFXAMQ 320
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
EG PD L+ACS + G L + IT ++D+Y + G L
Sbjct: 321 KEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRL 380
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E+AL MIE + +KPNE S+LAAC
Sbjct: 381 EDAL---------------NMIEEMP-------------------MKPNEVVLGSLLAAC 406
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIE-HFVCLVDLLSRAGLLYQAEEFIKIMPA 382
R G + +L + + +++ P + ++V L ++ + G A + M A
Sbjct: 407 RTHGDVNLAERLMKHL---FKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKA 458
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 17/190 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G +H V +I + NSLI Y R AR +F KM R + SWN+++ +
Sbjct: 245 LGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFA 304
Query: 60 -NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-------KTVHCYAT 111
N F+D E L F + EG D ++ +AC+ ++ G K+VH
Sbjct: 305 VNGFAD--ESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITP 362
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
++ ++ +Y + +++AL + +EM + N V L L+ V+LA
Sbjct: 363 RI------EHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAE 416
Query: 172 EVFDEIVDKD 181
+ + D
Sbjct: 417 RLMKHLFKLD 426
>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Cucumis sativus]
Length = 611
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 150/463 (32%), Positives = 256/463 (55%), Gaps = 9/463 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LH+ + K D + N+L+ YG+ L A LFD+MP RD SW ++++ +N
Sbjct: 25 LHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALI 84
Query: 65 SGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME- 122
L + + +G+ D + AC+ L L GK VH + L + + E
Sbjct: 85 PRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVH---ARFMLSFFCDDEV 141
Query: 123 --NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++L+ MY KC + D+A +FD + +N VS +I+GY A ++F + +
Sbjct: 142 VKSSLIDMYTKCGQPDDARAVFDSI-LFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVR 200
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSNLQYGRLV 239
++ W +++ G +++ + LF +M EG+ D V+ SV+ C++L+ L+ G+ +
Sbjct: 201 NLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQI 260
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ F+ AL+DMY+KC + A FY+ KDV++WT++I G A +G
Sbjct: 261 HGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKA 320
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL ++ +M IKPNE TFV +L AC H+GL++ G +LFR M Y + P+++H+ C
Sbjct: 321 EEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTC 380
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
L+DLLSR+G L +AE + +P + ++ +LLSAC+ ++ ++G ++A+ ++ L +
Sbjct: 381 LLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPED 440
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+LLSN YA W V++ R+ M ++ RK+PG S ID
Sbjct: 441 PSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDF 483
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 116/264 (43%), Gaps = 39/264 (14%)
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
CAR + +H K G + + N LL +Y KC + +AL+LFDEM +R
Sbjct: 13 CARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNR----- 67
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID-EG 212
D V W S++ KA P L + M +G
Sbjct: 68 ---------------------------DHVSWASILTAHNKALIPRRTLSMLNTMFTHDG 100
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ PD V ++ ACSSL L+ G+ VH + + D VK++LIDMY+KCG ++A
Sbjct: 101 LQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDAR 160
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F K+ V+WT+MI G A G EA+ +F Q + N ++ ++++ SG
Sbjct: 161 AVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVR----NLFSWTALISGLIQSG 216
Query: 333 LITEGCQLFRRMG--GVYRVQPTI 354
LF M G+ V P +
Sbjct: 217 HGIYSFSLFNEMRREGIDIVDPLV 240
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 152/367 (41%), Gaps = 100/367 (27%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+GK +HA + D V +SLI Y + DAR +FD + F++ SW +++S Y
Sbjct: 123 LGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYA 182
Query: 60 ------------------NDFS---------DSGEVLI---LFKQLIFEGI-VADKITLV 88
N FS SG + LF ++ EGI + D + L
Sbjct: 183 RSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLS 242
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ CA L L GK +H +G E L + NAL+ MYAKC +
Sbjct: 243 SVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSD-------------- 288
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+ A+++F + KD++ W S++ G + + EEAL L+ +M
Sbjct: 289 ------------------ILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEM 330
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGS 267
+ + P+E V +L ACS + GR + R + + +I T L+D+ S+ G
Sbjct: 331 VLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGH 390
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
L+EA E L +++ KP+E T+ S+L+A
Sbjct: 391 LDEA-------------------ENL---------------LDKIPFKPDEPTWASLLSA 416
Query: 328 C-RHSGL 333
C RH+ L
Sbjct: 417 CMRHNNL 423
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 86/180 (47%), Gaps = 1/180 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V +S +++ N+L+ Y + + A+ +F +MP +DV SW +++
Sbjct: 256 LGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTA 315
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYML 119
+ E L L+ +++ I +++T V L AC+ + G+ + T + L
Sbjct: 316 QHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSL 375
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
LL + ++ +DEA L D++ + + + L++ + +++ + D ++D
Sbjct: 376 QHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLD 435
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
L C+ + +H I++ + + + L+D+Y KCG + +AL F + +D
Sbjct: 10 LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
V+W +++ + L + M G++P+ F ++ AC G + G Q+
Sbjct: 70 VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129
Query: 343 R 343
R
Sbjct: 130 R 130
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/467 (32%), Positives = 253/467 (54%), Gaps = 11/467 (2%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND---F 62
H + L YV ++H A +F +P ++ N ++ Y
Sbjct: 30 HGLAVRLCLSQSSYVATQIVHVCNGHGRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLH 89
Query: 63 SDSGEVLILFKQLIFEGI------VADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
D+ EV + + + + V D+ T L AC L G+ VH + + G E
Sbjct: 90 RDAVEVYVRMLRCLPDPSSSGGFSVGDRFTYPFLLKACGGLAASQLGRQVHAHVARSGCE 149
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
++N+L+ MY +C ++ A ++FD M ++ VS N LI+ + M + ARE+F
Sbjct: 150 SHAIVQNSLIEMYTRCGDLSLARKVFDGM-REKDAVSWNTLISAHARMGQMRKARELFHS 208
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ DK +V W +++ G A+E+F++M EG PD+ +V+VL AC+ L L+ G
Sbjct: 209 MPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELG 268
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
R ++ + ++ + ++ AL++MY+KCG +EEAL F+ KDV++W+T I GLA +
Sbjct: 269 RWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAH 328
Query: 297 GLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
G EA+++F M+R+G + PN TFV +L+AC H+GL+ EG + F RM Y V+P++E
Sbjct: 329 GRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVE 388
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
H+ C+VDLL R+G + +A + I MP + +LLSAC ++S+ D A +++L
Sbjct: 389 HYGCVVDLLGRSGRIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTAVVAAERLVEL 448
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ V+L+N YA G W VA R+ ++ TRK PG S+I++
Sbjct: 449 EPEDVGNLVMLANVYAAAGRWGNVASTRKEIRSRSTRKTPGCSMIEV 495
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 135/311 (43%), Gaps = 71/311 (22%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G+ +HAHV ++ +S V NSLI Y R + AR +FD M +D SWNTL+S +
Sbjct: 135 LGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAHA 194
Query: 60 ---------------------------------NDFSDSGEVLILFKQLIFEGIVADKIT 86
DF+ + EV F+Q+ EG D ++
Sbjct: 195 RMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEV---FRQMQMEGFEPDDVS 251
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+V + ACA+L L G+ ++ Y K G+ + + NAL+ MYAKC ++EAL+LF M
Sbjct: 252 IVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMS 311
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
+KD++ W + + G + EA++LF+
Sbjct: 312 --------------------------------EKDVISWSTAIGGLAAHGRAREAVKLFE 339
Query: 207 KMIDEG-VTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSK 264
M EG V P+ V +LSACS L G R R + + ++D+ +
Sbjct: 340 VMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGR 399
Query: 265 CGSLEEALVTF 275
G ++ AL T
Sbjct: 400 SGRIQRALDTI 410
>gi|302801784|ref|XP_002982648.1| hypothetical protein SELMODRAFT_51938 [Selaginella moellendorffii]
gi|300149747|gb|EFJ16401.1| hypothetical protein SELMODRAFT_51938 [Selaginella moellendorffii]
Length = 481
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 141/413 (34%), Positives = 235/413 (56%), Gaps = 3/413 (0%)
Query: 20 VGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG 79
+G +++ YG+ +A +FD++ R++ +WNTLM Y + EVL L K++ EG
Sbjct: 71 LGTAIVTMYGKSGNLVEASQVFDRLSSRNIITWNTLMGAYAQYGHPDEVLRLQKRMELEG 130
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL 139
+ +++T + L AC+ LE L G+ +H T G +++A++ MY KCK ++ A
Sbjct: 131 VKQNRVTYLSLLDACSELESLTDGQALHARITATGYVGDAVLDSAVVNMYTKCKSLERAR 190
Query: 140 RLFDEMGSRRNIVSLNILINGYIDM-ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP 198
R+FD M + V+ LI+ Y + ++ AREVFD + + +V W +++ +
Sbjct: 191 RVFDRM-QLKTEVTWTTLISAYAQQGQDLENAREVFDRMTTRTVVTWNTLLTAYGQHGHS 249
Query: 199 EEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTAL 258
EEA+ L+++M +GV PDE V+++ AC + +L GR VH I++ + A V TAL
Sbjct: 250 EEAIRLYQRMEPDGVEPDEITYVTIVGACGDMQSLAEGRPVHDRIVRAGLENGALVSTAL 309
Query: 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
+ MY KCGSL+EA F +D ++V+W MI A G G + L ++ M G++PN
Sbjct: 310 VSMYGKCGSLDEARKIFDGSDLSNLVSWNAMIVAYAQNGEGKQGLELYELMNLGGVEPNG 369
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
T+ VL AC H+GL+ E + F + ++ EHF C+ D+L R G L +AEEF+K
Sbjct: 370 VTYTGVLFACAHAGLLDEAWKQFVSLKTDRGIEWEDEHFSCMTDMLGRLGRLEEAEEFLK 429
Query: 379 IMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431
P + + + +LL++C + + + GK+V+ MK ++ +YV+LSN YA
Sbjct: 430 RFP-QAGGVPWLSLLNSCQMHGDLERGKRVSQEAMKRNPETSSSYVMLSNIYA 481
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/364 (27%), Positives = 168/364 (46%), Gaps = 58/364 (15%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM---- 145
L C + L G+ VH K G E + N L+ MYAKC ++A + F+++
Sbjct: 1 LVRRCRDRQALEEGRRVHEQIRKNGFEGETFLGNLLVEMYAKCGSWEDARQAFEKIEHKN 60
Query: 146 ----GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
G+ + ++ I+ LV+ A +VFD + ++I+ W ++M + P+E
Sbjct: 61 AFSFGTNQPVLGTAIVTMYGKSGNLVE-ASQVFDRLSSRNIITWNTLMGAYAQYGHPDEV 119
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L L K+M EGV + +S+L ACS L +L G+ +H I DA + +A+++M
Sbjct: 120 LRLQKRMELEGVKQNRVTYLSLLDACSELESLTDGQALHARITATGYVGDAVLDSAVVNM 179
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA--------------------------- 294
Y+KC SLE A F + K VTWTT+I A
Sbjct: 180 YTKCKSLERARRVFDRMQLKTEVTWTTLISAYAQQGQDLENAREVFDRMTTRTVVTWNTL 239
Query: 295 -----NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
+G EA+R++ +ME G++P+E T+V+++ AC + EG + R+
Sbjct: 240 LTAYGQHGHSEEAIRLYQRMEPDGVEPDEITYVTIVGACGDMQSLAEGRPVHDRI----- 294
Query: 350 VQPTIEH----FVCLVDLLSRAGLLYQAEEFIKIMPAED--KFISYKALLSACITYSEFD 403
V+ +E+ LV + + G L +A KI D +S+ A++ + Y++
Sbjct: 295 VRAGLENGALVSTALVSMYGKCGSLDEAR---KIFDGSDLSNLVSWNAMI---VAYAQNG 348
Query: 404 LGKK 407
GK+
Sbjct: 349 EGKQ 352
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 139/340 (40%), Gaps = 87/340 (25%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY-------------GRMALFTD------------ 36
G+ LHA +T T D + +++++ Y RM L T+
Sbjct: 154 GQALHARITATGYVGDAVLDSAVVNMYTKCKSLERARRVFDRMQLKTEVTWTTLISAYAQ 213
Query: 37 -------ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
AR +FD+M R V +WNTL++ Y S E + L++++ +G+ D+IT V
Sbjct: 214 QGQDLENAREVFDRMTTRTVVTWNTLLTAYGQHGHSEEAIRLYQRMEPDGVEPDEITYVT 273
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ AC ++ L G+ VH + GLE + AL+ MY KC +DEA ++FD GS
Sbjct: 274 IVGACGDMQSLAEGRPVHDRIVRAGLENGALVSTALVSMYGKCGSLDEARKIFD--GS-- 329
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
DL+ ++V W +M+ + + ++ LEL++ M
Sbjct: 330 ------------------DLS----------NLVSWNAMIVAYAQNGEGKQGLELYELMN 361
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT------------A 257
GV P+ VL AC+ H +L Q +KT
Sbjct: 362 LGGVEPNGVTYTGVLFACA-----------HAGLLDEAWKQFVSLKTDRGIEWEDEHFSC 410
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+ DM + G LEEA + V W +++ +G
Sbjct: 411 MTDMLGRLGRLEEAEEFLKRFPQAGGVPWLSLLNSCQMHG 450
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 158/492 (32%), Positives = 254/492 (51%), Gaps = 63/492 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGR------------MALFTDA------------ 37
GK +HAHV K SD+++ SLI+ Y + + F DA
Sbjct: 148 GKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYAL 207
Query: 38 -------RVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
R LFD+MP +DV SWN +++ Y S E L+LF+ + + ++ T+V +
Sbjct: 208 WGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSV 267
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+ L G ++ + GL L + NAL+ MY+KC ++ A
Sbjct: 268 LSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTA------------ 315
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
RE+FD+++++D++ W M+ G +EAL LF++M+
Sbjct: 316 --------------------RELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLA 355
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
GV P E +S+L +C+ L + G+ +H +I +N + + T+LID+Y+KCG++
Sbjct: 356 SGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVA 415
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F K + +W MI GLA +G ++A +F +M GI+PNE TFV +L+AC+H
Sbjct: 416 ARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKH 475
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+GL+ G Q F M Y++ P +H+ C++DLL RAGL +AE ++ M + +
Sbjct: 476 AGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWG 535
Query: 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450
+LL AC + +LG+ VA + +L + AYVLLSN YA G W +VA R + +
Sbjct: 536 SLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRG 595
Query: 451 TRKKPGNSIIDL 462
+K PG + I++
Sbjct: 596 MKKVPGCTTIEV 607
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 182/337 (54%), Gaps = 3/337 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG--RMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K +HAH+ KT L + ++ + LI F R + A LF+ + ++ WN+++ +
Sbjct: 46 KQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLS 105
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
L+ F ++I+ G+ + T L +CA+L H GK +H + K+G +
Sbjct: 106 MSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVF 165
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +L+ MYA+ EM+ A +FD+ + R+ +S LI GY +D AR++FDE+ K
Sbjct: 166 IHTSLINMYAQSGEMNNAQLVFDQ-SNFRDAISFTALIAGYALWGYMDRARQLFDEMPVK 224
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ G + + +EAL LF+ M V P+E +VSVLSAC+ + L G +
Sbjct: 225 DVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMR 284
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I + + + ALIDMYSKCG L+ A F +DV++W MI G +
Sbjct: 285 SWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYK 344
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
EAL +F +M G++P E TF+S+L +C H G I G
Sbjct: 345 EALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG 381
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 160/369 (43%), Gaps = 69/369 (18%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G + + + L S++ + N+LI Y + AR LFD M RDV SWN ++ Y
Sbjct: 279 LGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYT 338
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF++++ G+ +IT + + +CA L + GK +H Y K +
Sbjct: 339 HMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTS 398
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +L+ +YAKC NIV+ AR+VFD + K
Sbjct: 399 LSTSLIDLYAKCG----------------NIVA----------------ARQVFDGMKIK 426
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ W +M+ G Q ++A ELF KM +G+ P+E V +LSAC
Sbjct: 427 SLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACK------------ 474
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
L+D+ + S ++V YK K + MI+ L GL
Sbjct: 475 --------------HAGLVDLGQQFFS---SMVQDYKISPKS-QHYGCMIDLLGRAGLFE 516
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVC 359
EA + ME +KP+ A + S+L ACR G + G + R+ + ++P +V
Sbjct: 517 EAESLLQNME---VKPDGAIWGSLLGACRDHGRVELGELVAERL---FELEPDNPGAYVL 570
Query: 360 LVDLLSRAG 368
L ++ + AG
Sbjct: 571 LSNIYAGAG 579
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 118/260 (45%), Gaps = 33/260 (12%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
+ A +F+ I + ++ +W SM+ G + P AL F +MI GV P+ +L +
Sbjct: 79 ISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKS 138
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD------- 279
C+ L++ G+ +H +L+ D F+ T+LI+MY++ G + A + F +++
Sbjct: 139 CAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISF 198
Query: 280 ------------------------CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
KDVV+W MI G A G EAL +F M + +
Sbjct: 199 TALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVP 258
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
PNE+T VSVL+AC S + G + R + ++ L+D+ S+ G L A E
Sbjct: 259 PNESTIVSVLSACAQSNALDLGNSM-RSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARE 317
Query: 376 FIKIMPAEDKFISYKALLSA 395
M D IS+ ++
Sbjct: 318 LFDDMLERD-VISWNVMIGG 336
>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
Length = 584
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 161/462 (34%), Positives = 257/462 (55%), Gaps = 7/462 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + KT + SD+++ N LI Y + AR +FD+MP RD S+N+++ Y
Sbjct: 112 GMQVHGFLRKTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVK 171
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
LI + +F+ + +K L+ + + G V E L
Sbjct: 172 CG-----LIESARELFDLMPREKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLIS 226
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ Y K + +++A LFD M R+++V+ +I+GY + V A+++FDE+ +D
Sbjct: 227 WNSLIDGYVKHRRIEDAKSLFDLM-PRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRD 285
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V + SMM G V+ K EA+ +F M E ++PDE +V VLSA + L L +H
Sbjct: 286 VVAYNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIH 345
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I+ N + ALID YSKCGS+++++ F + + K + W MI GLA +GLG
Sbjct: 346 LYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGE 405
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A + Q+E++ IKP++ TF+ VL AC HSGL+ EG F M ++++P ++H+ C+
Sbjct: 406 SAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCM 465
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+LSR+G + A+ I+ MP E + ++ L+AC + EF+ G+ VA ++ G +
Sbjct: 466 VDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNP 525
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++VLLSN YA G W EV R MKE + RK PG S I+L
Sbjct: 526 SSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWIEL 567
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 126/294 (42%), Gaps = 36/294 (12%)
Query: 166 LVDLAREVFDEI------VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
L + AR +F E V++D LW +++ P AL LF MI+ V+ D+
Sbjct: 36 LAEFARCIFHEYHVSSYSVEEDPFLWNAVIKSFSHGVDPRNALLLFCLMIENSVSVDKFS 95
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279
+ VL ACS L + +G VH F+ + I D F++ LI +Y KCG L A F +
Sbjct: 96 ISLVLKACSRLGFVDFGMQVHGFLRKTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMP 155
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS-GLITEGC 338
+D V++ +MI+G GL A +F M R+ K N ++ +++ S +
Sbjct: 156 QRDSVSYNSMIDGYVKCGLIESARELFDLMPRE--KKNLISWNCMISGYTQSEDGVNVAS 213
Query: 339 QLFRRMG-----------GVYRVQPTIEHFVCLVDLLSRA---------------GLLYQ 372
+LF M Y IE L DL+ R G ++Q
Sbjct: 214 KLFDEMPEKDLISWNSLIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQ 273
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLL 426
A++ MP D ++Y ++++ + + N+M K + S + L+
Sbjct: 274 AKKLFDEMPQRD-VVAYNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLV 326
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 221/381 (58%), Gaps = 1/381 (0%)
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL 139
++ D T + AC +L + GKT+H K+G L ++N +L +Y C EM +A+
Sbjct: 6 VLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAM 65
Query: 140 RLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
LF++M +R+ V+ NI+I +D A F + +K++ W SM+ G V+ +P
Sbjct: 66 LLFEKM-PQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPN 124
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
EA++LF K+ DE V P+E +VSVL+AC+ L +L GR+VH + ++ ++ V LI
Sbjct: 125 EAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLI 184
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
DMY KCG LE A FY+ + + VV+W+ MI GLA +G EAL +F +M + G+KPN
Sbjct: 185 DMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGV 244
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
TF+ +L AC H GLI EG + F M Y V P IEH+ C+VDL SRAGLL +A EFI
Sbjct: 245 TFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILS 304
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
MP + + + ALL C + DL ++ ++ +L + YV++SN YA W +
Sbjct: 305 MPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDA 364
Query: 440 AEARRNMKELQTRKKPGNSII 460
A R+ MK+ +K G S I
Sbjct: 365 ARVRKLMKDRGVKKTSGWSSI 385
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 153/350 (43%), Gaps = 78/350 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM----- 56
GK +H K S++++ N +++ YG DA +LF+KMP RD +WN ++
Sbjct: 29 GKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLFEKMPQRDAVTWNIVIAQLAK 88
Query: 57 -----------------------SIYNDFSDSG---EVLILFKQLIFEGIVADKITLVIL 90
S+ + F G E + LF +L E + +++T+V +
Sbjct: 89 RGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSV 148
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
+ACA L L G+ VH Y+TK G + +++ N L+ MY KC ++ A R+F EM R
Sbjct: 149 LAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEER-- 206
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+V W +M+ G Q EEAL LF +MI
Sbjct: 207 ------------------------------TVVSWSAMIAGLAMHGQAEEALCLFSEMIK 236
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTAL------IDMYSK 264
GV P+ + +L ACS + + GR RF ++T D V + +D++S+
Sbjct: 237 LGVKPNGVTFIGLLHACSHMGLIDEGR---RFFA--SMTADYGVIPQIEHYGCVVDLFSR 291
Query: 265 CGSLEEALVTFYKTDCK-DVVTWTTMIEGL---ANYGLGNEALRVFYQME 310
G LEEA K + V W ++ G N L EA++ +++
Sbjct: 292 AGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELD 341
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 114/256 (44%), Gaps = 15/256 (5%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + TK+ +++V N+LI Y + +AR +F +M R V SW+ +++
Sbjct: 160 LGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLA 219
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT-KVGLEYML 119
+ E L LF ++I G+ + +T + L AC+ + + G+ T G+ +
Sbjct: 220 MHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQI 279
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ ++++ ++EA M + N V L+ G + +DLA E + +
Sbjct: 280 EHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSE 339
Query: 180 KDIV---LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
D + + + + +A++ E+A + K M D GV S S++
Sbjct: 340 LDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGV-----------KKTSGWSSITVN 388
Query: 237 RLVHRFILQNNITQDA 252
+VH F+ + A
Sbjct: 389 GVVHEFVAGDQTHPQA 404
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 260/463 (56%), Gaps = 8/463 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF---YGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+ +HA + KT L + + + LI F G A +F ++ + + L+ +
Sbjct: 23 RQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGF 82
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVI--LFSACARLEKLHYGKTVHCYATKVGLEY 117
+D S+ E LIL+ +++ + + I + AC +L G+ VH K L +
Sbjct: 83 SDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWF 142
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ N+++ MY E++ A R+FD M R++VS N +I GY+ ++LA++VF+ +
Sbjct: 143 DPFVGNSMVRMYIDFGEIELARRVFDRM-PNRDVVSWNSMIAGYLKAGEIELAKKVFETM 201
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
DKD+V W SM+ V+ + P +AL+LF++M+ G+ PD +VSVLSA + L ++ G+
Sbjct: 202 SDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGK 261
Query: 238 LVHRFILQNNIT-QDAFVKTALIDMYSKCGSLEEALVTFYK-TDCKDVVTWTTMIEGLAN 295
+H ++ N I F+ +ALIDMYSKCG +E A F + +++ W +MI GLA
Sbjct: 262 WLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAI 321
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
+GL EAL +F +MER I+PNE TF+ +L+ C H GL+ EG F M Y++ P I+
Sbjct: 322 HGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQ 381
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
H+ C++DL RAG L A I+ MP E +++KA+LSA + + ++GK A ++L
Sbjct: 382 HYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIEL 441
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNS 458
+YVLLSN YA G W +VA+ R M++ +K G S
Sbjct: 442 APDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCS 484
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 141/330 (42%), Gaps = 65/330 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS---- 57
G+ +H V KT L D +VGNS++ Y AR +FD+MP RDV SWN++++
Sbjct: 128 GRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLK 187
Query: 58 ---------IYNDFSDSGEV------------------LILFKQLIFEGIVADKITLVIL 90
++ SD V L LF++++ G+ D +V +
Sbjct: 188 AGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSV 247
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLN-MENALLLMYAKCKEMDEALRLFDEMGSRR 149
SA A L + GK +H Y + +E + +AL+ MY+KC ++ A +F + RR
Sbjct: 248 LSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRR 307
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
NI N +I+G +HG + EAL++F +M
Sbjct: 308 NIGDWNSMISGL--------------------------AIHGLAR-----EALDIFVEME 336
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSL 268
+ P+E + +LS CS ++ G+ + + I +ID++ + G L
Sbjct: 337 RMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRL 396
Query: 269 EEALVTFYKTDCK-DVVTWTTMIEGLANYG 297
E+AL + D++ W ++ +G
Sbjct: 397 EDALGVIQNMPFEADLLAWKAILSASMKHG 426
>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 165/467 (35%), Positives = 248/467 (53%), Gaps = 14/467 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LHA K+A D+ VG +++ Y + DAR FD+MP R+V S+N L++ Y
Sbjct: 74 LGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYA 133
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCY-ATKVGLEYML 119
D L LF + +T L A EK + + AT G+ ++
Sbjct: 134 VAGDMDGALALFGGMR----SWTHVTWATLIRGFA--EKGDMAEARRWFEATPPGMRTVV 187
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
L+ Y +M+ A +FD M +R N + ++ GY + AR VFD I
Sbjct: 188 TW-TVLVQGYVCAGDMETAREVFDRMPAR-NAFVWSSMVTGYFKAGDAEEARAVFDRIPT 245
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+++V W +++ G + E+ALE F M+ E V PDE M S+LSAC+ L +L+ G+ V
Sbjct: 246 RNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKV 305
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H FI Q +I ++ FV LIDMY+KCG L A F K+ W TMI LA++G
Sbjct: 306 HDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQS 365
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+EAL +F+QMER G KPN T ++VL AC H G + EG Q+F ++ Y V +EH+ C
Sbjct: 366 DEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKL-DAYGVGAGVEHYGC 424
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN-- 417
LVDLL RAG L +A E + M E + + +LL AC + + ++ + V +++L +
Sbjct: 425 LVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHSFH 484
Query: 418 -QSHEA-YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
S++A Y++L+N A W + + RR M K PG S ++L
Sbjct: 485 ASSNDAEYIMLANIMAASERWEQAEQMRRKMARRGVEKTPGCSSLEL 531
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 94/384 (24%), Positives = 169/384 (44%), Gaps = 20/384 (5%)
Query: 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE-KLHYGKTV 106
D W L+ Y S E +++ + + + V+L +A A +L GK++
Sbjct: 19 DPDKWAHLVKEYASQSLLREAALVYARNLPRRTHHQPLLPVLLKAAAASSPTELGLGKSL 78
Query: 107 HCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMEL 166
H A K L + ++ MY KC + +A R FDEM RN++S N L+ GY
Sbjct: 79 HAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEM-PDRNVISYNALLAGYAVAGD 137
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS---V 223
+D A +F + V W +++ G + EA F E P +V+ +
Sbjct: 138 MDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWF-----EATPPGMRTVVTWTVL 192
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
+ +++ R V ++AFV ++++ Y K G EEA F + +++
Sbjct: 193 VQGYVCAGDMETAREV----FDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNL 248
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
V W +I G A G +AL F+ M ++ +KP+E T S+L+AC G + +G ++
Sbjct: 249 VNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDF 308
Query: 344 MGGVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
+ + HFV L+D+ ++ G L A M ++ + ++SA ++ +
Sbjct: 309 ---INQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNEC-WNTMISALASHGQ 364
Query: 402 FDLGKKVANNMMKLGNQSHEAYVL 425
D + M + G + + VL
Sbjct: 365 SDEALHLFFQMERSGRKPNTITVL 388
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 159/488 (32%), Positives = 266/488 (54%), Gaps = 39/488 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD----ARVLFD-KMPFRDVGSWNTLMS 57
K + + + T L D + + LI F ++ + D +LF+ + P + SWN +
Sbjct: 67 KQIQSQMVLTGLIEDGFASSRLIAFCA-ISEWRDLDYCTNILFNTRNP--NTFSWNVAIR 123
Query: 58 IYNDFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
+ D + E ++L+K+++ +G D T +LF ACARL + G + + +G +
Sbjct: 124 GFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFD 183
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI-DME---------- 165
+ + NA++ + C ++D A ++FD+ R++VS N +INGY ++E
Sbjct: 184 SDIFVSNAVIHLLVSCGDLDGARKMFDK-SCVRDLVSWNSMINGYCGNLESARKLFDSMT 242
Query: 166 ------------------LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
L+D+A ++FDE+ DKD+V W +M+ G V A + +EAL LF +
Sbjct: 243 NKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNE 302
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M + PDE MVS LSACS L L G +H +I ++ ++ + + TALIDMY+KCG
Sbjct: 303 MQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGK 362
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+ +A+ F + ++ +TWT +I GLA +G + A+ F +M + P+E TF+ +L+A
Sbjct: 363 ITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSA 422
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C H GL+ EG + F +M + + P ++H+ C+VDLL RAGLL +AEE IK MP E +
Sbjct: 423 CCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAV 482
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
+ AL AC + +G++ A+ ++++ YVLL+N Y W E +AR+ M+
Sbjct: 483 VWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMR 542
Query: 448 ELQTRKKP 455
+ K P
Sbjct: 543 QRGVEKTP 550
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 125/299 (41%), Gaps = 30/299 (10%)
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV-----------DL 169
+ N L + KCK + + ++ +M V ++ +G+ L+ D
Sbjct: 49 LSNPFLSLLEKCKSISQLKQIQSQM------VLTGLIEDGFASSRLIAFCAISEWRDLDY 102
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACS 228
+ + + W + G + ++ P EA+ L+K+++ +G PD + AC+
Sbjct: 103 CTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACA 162
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
LS ++ G + +L D FV A+I + CG L+ A F K+ +D+V+W +
Sbjct: 163 RLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNS 222
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG--G 346
MI G G A ++F M K + ++ +++ SGL+ +LF M
Sbjct: 223 MINGYC--GNLESARKLFDSMTNKTM----VSWTTMVVGYAQSGLLDMAWKLFDEMPDKD 276
Query: 347 VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
V I +V + A L+ + + I P E +S LSAC D+G
Sbjct: 277 VVPWNAMIGGYV-HANRGKEALALFNEMQAMNINPDEVTMVS---CLSACSQLGALDVG 331
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 158/465 (33%), Positives = 249/465 (53%), Gaps = 44/465 (9%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALF--TDARVLFDKMPFRDVGSWNTLMSIYN 60
K +H H+ K L SDIYV N+LI Y R DA LF+KM RD SWN+++
Sbjct: 137 KMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLV 196
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + LF ++ +++
Sbjct: 197 KAGELRDARRLFDEMPQRDLIS-------------------------------------- 218
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE--IV 178
N +L YA+C+EM +A LF++M RN VS + ++ GY +++AR +FD+ +
Sbjct: 219 -WNTMLDGYARCREMSKAFELFEKM-PERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLP 276
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K++V W ++ G + +EA L +M+ G+ D ++S+L+AC+ L G
Sbjct: 277 AKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMR 336
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H + ++N+ +A+V AL+DMY+KCG+L++A F KD+V+W TM+ GL +G
Sbjct: 337 IHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGH 396
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G EA+ +F +M R+GI+P++ TF++VL +C H+GLI EG F M VY + P +EH+
Sbjct: 397 GKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYG 456
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
CLVDLL R G L +A + ++ MP E + + ALL AC ++E D+ K+V +N++KL
Sbjct: 457 CLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPC 516
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y LLSN YA W VA+ R MK + K G S ++L+
Sbjct: 517 DPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELE 561
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 186/397 (46%), Gaps = 50/397 (12%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K LHA + + L D+++ LI A +F+++ +V N+L+ +
Sbjct: 36 KQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQN 95
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
S + +F ++ G+ AD T L AC+ L K +H + K+GL + +
Sbjct: 96 SQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVP 155
Query: 123 NALLLMYAKCKEMD--EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
NAL+ Y++C + +A++LF++M S R+ VS N ++ G + + AR +FDE+ +
Sbjct: 156 NALIDCYSRCGGLGVRDAMKLFEKM-SERDTVSWNSMLGGLVKAGELRDARRLFDEMPQR 214
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D++ W +M+ G + ++ +A ELF+KM + S S + G
Sbjct: 215 DLISWNTMLDGYARCREMSKAFELFEKMPERNTV--------------SWSTMVMG---- 256
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT--DCKDVVTWTTMIEGLANYGL 298
YSK G +E A V F K K+VVTWT +I G A GL
Sbjct: 257 ---------------------YSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGL 295
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EA R+ QM G+K + A +S+LAAC SGL++ G ++ + R +V
Sbjct: 296 LKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSIL---KRSNLGSNAYV 352
Query: 359 --CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
L+D+ ++ G L +A + +P +D +S+ +L
Sbjct: 353 LNALLDMYAKCGNLKKAFDVFNDIPKKD-LVSWNTML 388
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 155/344 (45%), Gaps = 43/344 (12%)
Query: 130 AKCKEMDEALRLFDEMGSRRNIVSLNI---LINGYIDMELVDLAREVFDEIVDKDIVLWR 186
KC +++ +L ++ R L+I LI+ +LA VF+++ + ++ L
Sbjct: 27 PKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCN 86
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
S++ + QP +A +F +M G+ D +L ACS S L +++H I +
Sbjct: 87 SLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKL 146
Query: 247 NITQDAFVKTALIDMYSKCGSL--EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
++ D +V ALID YS+CG L +A+ F K +D V+W +M+ GL G +A R
Sbjct: 147 GLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARR 206
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ------------- 351
+F +M ++ + + T + A CR +++ +LF +M V
Sbjct: 207 LFDEMPQRDLI-SWNTMLDGYARCRE---MSKAFELFEKMPERNTVSWSTMVMGYSKAGD 262
Query: 352 ---------------PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED-KF--ISYKALL 393
+ + ++ + GLL +A+ + M A KF + ++L
Sbjct: 263 MEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISIL 322
Query: 394 SACITYSEFDLGKKVANNMMKLGNQSHEAYVL--LSNFYALEGH 435
+AC LG ++ ++++K N AYVL L + YA G+
Sbjct: 323 AACTESGLLSLGMRI-HSILKRSNLGSNAYVLNALLDMYAKCGN 365
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 23/193 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H+ + ++ L S+ YV N+L+ Y + A +F+ +P +D+ SWNT++
Sbjct: 333 LGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLG 392
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E + LF ++ EGI DK+T + + +C H G++Y +
Sbjct: 393 VHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCN-----------HAGLIDEGIDYFYS 441
Query: 121 ME------------NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168
ME L+ + + + EA+++ M N+V L+ VD
Sbjct: 442 MEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVD 501
Query: 169 LAREVFDEIVDKD 181
+A+EV D +V D
Sbjct: 502 IAKEVLDNLVKLD 514
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 162/452 (35%), Positives = 246/452 (54%), Gaps = 46/452 (10%)
Query: 46 FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGK 104
F +W+T +S +N+ QL+ D+ T + ACA L ++ G+
Sbjct: 100 FSQHNAWHTTISYFNN------------QLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQ 147
Query: 105 TVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM 164
VHC+ TK G E L + N+L+ +Y K A +LFDEM R++VS N LI+GY
Sbjct: 148 KVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEM-VVRDVVSWNTLISGYCFS 206
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA----------------------- 201
+VD AR VFD +++K++V W +M+ G + EEA
Sbjct: 207 GMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYA 266
Query: 202 --------LELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252
+ELF++M EG + P++ +VSVLSAC+ L L G+ +HRFI +N I
Sbjct: 267 QNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGL 326
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
F+ AL DMY+KCG + EA F++ +DV++W+ +I GLA YG NEA F +M
Sbjct: 327 FLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIED 386
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
G++PN+ +F+ +L AC H+GL+ +G + F M VY + P IEH+ C+VDLLSRAG L Q
Sbjct: 387 GLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQ 446
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432
AE I MP + I + ALL C Y + + G++V +++L + + V L+N YA
Sbjct: 447 AESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYAS 506
Query: 433 EGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
G + A R M++ ++ K PG S I++ +
Sbjct: 507 MGRLDDAASCRLRMRDNKSMKTPGCSWIEINN 538
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 135/299 (45%), Gaps = 35/299 (11%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFK 73
++ ++ +++I Y R+ +AR LF+ MP R+V SWN +++ Y + + LF+
Sbjct: 220 MEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFR 279
Query: 74 QLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKC 132
Q+ EG + + +TLV + SACA L L GK +H + + +E L + NAL MYAKC
Sbjct: 280 QMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKC 339
Query: 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC 192
+ EA +F EM R D++ W ++ G
Sbjct: 340 GCVLEAKGVFHEMHER--------------------------------DVISWSIIIMGL 367
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NNITQD 251
EA F +MI++G+ P++ + +L+AC+ + G + Q IT
Sbjct: 368 AMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPK 427
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQM 309
++D+ S+ G L++A + +V+ W ++ G Y RV +++
Sbjct: 428 IEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRI 486
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 80/169 (47%), Gaps = 4/169 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + + ++ +++GN+L Y + +A+ +F +M RDV SW+ ++
Sbjct: 309 LGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLA 368
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
+ + E F ++I +G+ + I+ + L +AC + G +V G+ +
Sbjct: 369 MYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKI 428
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDME 165
++ + ++ +D+A L + M + N++ L+ G Y D E
Sbjct: 429 EHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAE 477
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 160/465 (34%), Positives = 253/465 (54%), Gaps = 42/465 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA + K + D++V NSLIH Y DAR +F+ D+ +WN+++ Y
Sbjct: 178 GEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVK 237
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ G LF+++ LFS
Sbjct: 238 NGEIGAARELFEEMPERD----------LFSW---------------------------- 259
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+++ Y +M A LF++M R+IVS N +I+GY ++ +++A E+F+ + ++
Sbjct: 260 -NSMIAGYVGNGDMTAAEDLFNKM-PFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRN 317
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W M+ V+ K +E L +F KM+ E P+E +VSVL+AC+ L L G+ +H
Sbjct: 318 VVSWNIMLALYVRIKDYDECLRMFDKMMGE-TMPNEATLVSVLTACAHLGRLDRGKWIHS 376
Query: 242 FILQNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I N + + D + TAL+ MY+KCG+++ A F K + VV+W +MI G +G +
Sbjct: 377 YIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQAD 436
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL +F ME++G PN+ATF+ VL+AC HSG+I EG F M Y+++P +EH+ C+
Sbjct: 437 KALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCM 496
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGL+ EE I+ MP E + ALLSAC T+S +L + VA +++L +
Sbjct: 497 VDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDI 556
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
Y+LLSN YA EG W +V R+ MKE K G S + ++ +
Sbjct: 557 GPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGFSWVHIEEF 601
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 97/407 (23%), Positives = 180/407 (44%), Gaps = 49/407 (12%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVL-ILFKQLIFEGIVADKITLVILFSACA 95
A LF+ + D NT+M Y + +D L ++Q++ + + + T +L C
Sbjct: 111 AVSLFEGLEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCW 170
Query: 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLN 155
+ + G+ +H K G E L + N+L+ MY+ C + +A +F E+ S ++V+ N
Sbjct: 171 EIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMF-EVCSISDLVTWN 229
Query: 156 ILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215
+I+GY+ + ARE+F+E+ ++D+ W SM+ G V A +LF KM
Sbjct: 230 SMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKM------- 282
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
+D +ID Y++ ++E A F
Sbjct: 283 --------------------------------PFRDIVSWNCMIDGYAQVQNMEIACELF 310
Query: 276 YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335
++VV+W M+ +E LR+F +M + + PNEAT VSVL AC H G +
Sbjct: 311 NWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETM-PNEATLVSVLTACAHLGRLD 369
Query: 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
G + + ++P + L+ + ++ G + A + M + +S+ +++
Sbjct: 370 RGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKM-SNRSVVSWNSMIMG 428
Query: 396 CITYSEFDLGKKVANNMMKLGNQSHEAY---VLLSNFYA---LEGHW 436
+ + D ++ +M K G ++A VL + ++ LEG W
Sbjct: 429 YGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWW 475
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 116/248 (46%), Gaps = 11/248 (4%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF-KKMIDEGVTPDEEVMVSVLS 225
V A +F+ + + D + ++M V P AL + ++M+ + V P+ ++
Sbjct: 108 VQHAVSLFEGLEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVK 167
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
C + ++ G +H IL+ D FV+ +LI MYS CG + +A F D+VT
Sbjct: 168 VCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVT 227
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
W +MI+G G A +F +M + + ++ S++A +G +T LF +M
Sbjct: 228 WNSMIDGYVKNGEIGAARELFEEMPERDL----FSWNSMIAGYVGNGDMTAAEDLFNKM- 282
Query: 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
+R I + C++D ++ + A E MP + +S+ +L+ + ++D
Sbjct: 283 -PFR---DIVSWNCMIDGYAQVQNMEIACELFNWMPYRN-VVSWNIMLALYVRIKDYDEC 337
Query: 406 KKVANNMM 413
++ + MM
Sbjct: 338 LRMFDKMM 345
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 154/465 (33%), Positives = 256/465 (55%), Gaps = 6/465 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HAH+ K +L ++ ++ A +LF + + +N ++ Y
Sbjct: 31 KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHN 90
Query: 63 SDSGEVLILFKQLIFEG-----IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ ++KQ++ I DK T + +CA L GK VH + K G +
Sbjct: 91 KVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 150
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+EN+L+ MY KC +D+A R+F+EM + R+ VS N LI+G++ + + AR +F+E+
Sbjct: 151 NTVVENSLVEMYVKCDSLDDAHRVFEEM-TERDAVSWNTLISGHVRLGQMRRARAIFEEM 209
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
DK I W +++ G + +ALE F++M G+ PDE +VSVL C+ L L+ G+
Sbjct: 210 QDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGK 269
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H + + ++ V ALI+MY+KCGS+++ F + +DV++W+TMI GLAN+G
Sbjct: 270 WIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHG 329
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EA+ +F +M++ I+P+ TFV +L AC H+GL+ EG + F M Y ++P +EH+
Sbjct: 330 RAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHY 389
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
CLV+LL +G L QA E +K MP + + +LLS+C ++ + ++++L
Sbjct: 390 GCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEP 449
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA G W V+ R+ M+ +K PG S I++
Sbjct: 450 ADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEV 494
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 138/330 (41%), Gaps = 65/330 (19%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
+GK +H HV K S+ V NSL+ Y + DA +F++M RD SWNTL+S
Sbjct: 135 LGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHV 194
Query: 58 ----------IYNDFSDS------------------GEVLILFKQLIFEGIVADKITLVI 89
I+ + D + L F+++ GI D+I+LV
Sbjct: 195 RLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVS 254
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ CA+L L GK +H YA K G + + NAL+ MYAKC +D+ RLFD+M R
Sbjct: 255 VLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKER- 313
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D++ W +M+ G + EA+ELF++M
Sbjct: 314 -------------------------------DVISWSTMIVGLANHGRAREAIELFQEMQ 342
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+ P V +L+AC+ L G R NI L+++ G L
Sbjct: 343 KAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRL 402
Query: 269 EEALVTFYKTDCK-DVVTWTTMIEGLANYG 297
++AL K K D W +++ ++G
Sbjct: 403 DQALELVKKMPRKPDSPIWGSLLSSCRSHG 432
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 253/466 (54%), Gaps = 8/466 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF--YGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K HA V L +D + + L+ F + A LF ++ + NT++ +
Sbjct: 22 KEAHAQVLTCGLGTDSFALSRLLAFCSHPLHGSLPHAWKLFQQIQHPTICICNTMIKAFV 81
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ ++ Q++ G+ D TL + ACA L+ H G++ H + K+G + +
Sbjct: 82 LKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIF 141
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N L+ MY+ + A +FDEM VS ++I+GY + V+ AR +FDE K
Sbjct: 142 VGNTLIAMYSSFGNVRAARCIFDEM-PWHTAVSWTVMISGYAKVGDVETARMLFDEAPMK 200
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D +W S++ G V+ +E L++F+ M G+ PDE ++VS+L AC+ L ++ G VH
Sbjct: 201 DRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVH 260
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
R++ Q + T LIDMY+KCGSL+ A F +D + W MI G+A G G+
Sbjct: 261 RYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGD 320
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
ALR+F +ME+ G+KP++ TF+++ AC +SG+ E +L M VY ++P EH+ C+
Sbjct: 321 NALRLFSEMEKAGVKPDDITFIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCI 380
Query: 361 VDLLSRAGLLYQAEEFIKIMP----AEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
VDLL RAGLL +A+E I MP ++ I+++ALLSAC ++ + ++ + A + L
Sbjct: 381 VDLLGRAGLLKEAKELILKMPNSSSPTEQAIAWRALLSACCSHGQTEVAEDAAQRLFHLE 440
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ S AYVLLSN YA G V R+ M+ K PG S + +
Sbjct: 441 HHS-GAYVLLSNLYAAAGKQDHVRRIRKMMENRGVDKAPGCSSVKI 485
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 139/352 (39%), Gaps = 74/352 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ H K DI+VGN+LI Y AR +FD+MP+ SW ++S Y
Sbjct: 123 LGESAHGQSVKLGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYA 182
Query: 61 DFSD-----------------------SG--------EVLILFKQLIFEGIVADKITLVI 89
D SG E L +F+ + G+ D+ LV
Sbjct: 183 KVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVS 242
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ ACA L + G VH Y ++G + + L+ MYAKC +D A +LFD M R
Sbjct: 243 ILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQR- 301
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D + W +M+ G + AL LF +M
Sbjct: 302 -------------------------------DTICWNAMISGMAMNGDGDNALRLFSEME 330
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG--RLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
GV PD+ +++ +AC S S + + RL++ N+ + ++D+ + G
Sbjct: 331 KAGVKPDDITFIAIFTAC-SYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLLGRAGL 389
Query: 268 LEEALVTFYK-----TDCKDVVTWTTMIEGLANYG---LGNEALRVFYQMER 311
L+EA K + + + W ++ ++G + +A + + +E
Sbjct: 390 LKEAKELILKMPNSSSPTEQAIAWRALLSACCSHGQTEVAEDAAQRLFHLEH 441
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 225/397 (56%), Gaps = 4/397 (1%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
L L ++ +G++ TL AC L G+ +H YA K+ L + ALL
Sbjct: 372 PALALLSDMLAQGLLPTAHTLSASLPAC---RGLSPGRALHGYAFKLALAGDSYVATALL 428
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
MYA+ + A LFD+M ++VS+ ++ Y DM +D AR +FD + KD V W
Sbjct: 429 GMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWN 488
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
+M+ G + +P EAL LF++M+ GV PDE +V VLSA + L ++ G+ +H ++ +
Sbjct: 489 AMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNS 548
Query: 247 NITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
Q V TALIDMY KCGSL +A+ F+ KD+V W MI G A +G +AL +
Sbjct: 549 RRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEM 608
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F Q +G+ P + TF+ +L AC HSG++ EG + F+ M Y + P IEH+ C+VDLL
Sbjct: 609 FVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLG 668
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
RAGL+ +A ++ M + + +LL+AC + LG+++A+ ++ G + Y+L
Sbjct: 669 RAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYIL 728
Query: 426 LSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
LSN YA G+W EVA R MK +K+PG S I++
Sbjct: 729 LSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEI 765
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 148/361 (40%), Gaps = 98/361 (27%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGR------------------------------- 30
G+ LH + K AL D YV +L+ Y R
Sbjct: 405 GRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYA 464
Query: 31 -MALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
M DAR LFD +P +D WN ++ Y E L LF++++ G+ D++T+V+
Sbjct: 465 DMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVL 524
Query: 90 LFSACARLEKLHYGKTVHCYATKV-GLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ SA A+L + GK +H Y ++ + + AL+ MY KC + +A+ +F +G
Sbjct: 525 VLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGD- 583
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
++IV N +INGY MHG +ALE+F +
Sbjct: 584 KDIVVWNAMINGY--------------------------AMHG-----DSRKALEMFVQS 612
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
++G+ P + + +L+ACS ++ GR
Sbjct: 613 REQGLWPTDITFIGLLNACSHSGMVEEGR-----------------------------EF 643
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
+++ Y D K + + M++ L GL EA + M+ I P+ +VS+LAAC
Sbjct: 644 FQSMEREYGIDPK-IEHYGCMVDLLGRAGLIKEAFCLVQSMK---ITPDAVMWVSLLAAC 699
Query: 329 R 329
R
Sbjct: 700 R 700
>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
Length = 612
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 165/465 (35%), Positives = 253/465 (54%), Gaps = 13/465 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G +H + KT SD+++ N LI Y + AR +FD+MP RD S+N+++ Y
Sbjct: 147 GTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLK 206
Query: 60 -NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+GE+ L + +K L+ S + G V E
Sbjct: 207 CGLVESAGELFGLMPR--------EKRNLITWNSMIGGYAQRADGVNVAAKLFDEMPEKD 258
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L N+++ Y K +++A LFD M RR++V+ I+I+GY + LV A+ +FD++
Sbjct: 259 LISWNSMIGGYVKHGRIEDAKGLFDVM-PRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMP 317
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGR 237
+D+V++ SMM G V+ + EALE+F M E +TPDE +V VLSA + L L
Sbjct: 318 HRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXAQLGRLSKAI 377
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H +I++ + ALIDMYSKCGS++ A+ F + K + W MI GLA +G
Sbjct: 378 DMHLYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHG 437
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
LG A + Q+ER+ IKP+ TFV VL AC HSGL+ EG F M ++++P ++H+
Sbjct: 438 LGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 497
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VD+L+R+G + A+ I+ MP E + ++ L+AC + EF+ G+ VA +++
Sbjct: 498 GCMVDILARSGSIELAKNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAG 557
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ +YVLLSN YA G W +V R MKE K PG S I+L
Sbjct: 558 YNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWIEL 602
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 162/328 (49%), Gaps = 18/328 (5%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN ++ ++ D + L L ++ G+ DK + + AC+RL + G VH +
Sbjct: 96 WNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSFSLALKACSRLGFVKEGTQVHGFLI 155
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K G L ++N L+ +Y KC + A ++FD M +R+ VS N +I+GY+ LV+ A
Sbjct: 156 KTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRM-PQRDSVSYNSMIDGYLKCGLVESAG 214
Query: 172 EVFDEIV--DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
E+F + ++++ W SM+ G Q + + + K+ DE P+++ ++S S
Sbjct: 215 ELFGLMPREKRNLITWNSMIGG---YAQRADGVNVAAKLFDE--MPEKD----LISWNSM 265
Query: 230 LSN-LQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+ +++GR+ + + +D +ID Y K G + EA F + +DVV +
Sbjct: 266 IGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMPHRDVVVYN 325
Query: 288 TMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
+M+ G EAL VF ME++ + P+E + V VL+A G +++ + +
Sbjct: 326 SMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXAQLGRLSKAIDMHLYI-- 383
Query: 347 VYRVQPTIEHF-VCLVDLLSRAGLLYQA 373
V + P+ V L+D+ S+ G + A
Sbjct: 384 VEKQFPSSGKLGVALIDMYSKCGSIQHA 411
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 121/283 (42%), Gaps = 38/283 (13%)
Query: 166 LVDLAREVFDEI------VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
L + AR VF E +D LW ++ P +AL L M++ GV D+
Sbjct: 71 LAEFARCVFHEHHVSSSGEVEDPFLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFS 130
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279
L ACS L ++ G VH F+++ D F++ LI +Y KCG L A F +
Sbjct: 131 FSLALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMP 190
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA--ACRHSGLITEG 337
+D V++ +MI+G GL A +F M R+ K N T+ S++ A R G +
Sbjct: 191 QRDSVSYNSMIDGYLKCGLVESAGELFGLMPRE--KRNLITWNSMIGGYAQRADG-VNVA 247
Query: 338 CQLFRRMG------------------------GVYRVQPT--IEHFVCLVDLLSRAGLLY 371
+LF M G++ V P + + ++D + GL++
Sbjct: 248 AKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVH 307
Query: 372 QAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+A+ MP D + Y +++S + +V N+M K
Sbjct: 308 EAKTLFDQMPHRD-VVVYNSMMSGXVQNRYHMEALEVFNHMEK 349
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 158/494 (31%), Positives = 254/494 (51%), Gaps = 65/494 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY---GRM-------------------ALFT---- 35
G+ LH V K D D+Y+ SLI Y GR+ AL T
Sbjct: 122 GQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYAS 181
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
A +FD++P +DV SWN +S Y + + E L LFK+++ + D+ T+V +
Sbjct: 182 RGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTV 241
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+ + G+ VH + G L + NAL+ +Y+KC E++ A LF +
Sbjct: 242 LSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLS---- 297
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+KD++ W +++ G +EAL LF+ M+
Sbjct: 298 ----------------------------NKDVISWNTLIGGYTHMNLYKEALLLFQDMLR 329
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ--NNITQDAFVKTALIDMYSKCGSL 268
G P++ M+S+LSAC+ L + GR +H +I + +T + ++T+LIDMY+KCG +
Sbjct: 330 SGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDI 389
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E A F + + +W MI G A +G N A +F +M + GI+P++ TFV +L+AC
Sbjct: 390 EAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSAC 449
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
HSG++ G +FR M Y++ P +EH+ C++DL +GL +AE+ I M E +
Sbjct: 450 SHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVI 509
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+ +LL AC + +LG+ A N++K+ ++ +YVLLSN YA W EVA+ R + +
Sbjct: 510 WCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLND 569
Query: 449 LQTRKKPGNSIIDL 462
+K PG S I++
Sbjct: 570 KGMKKVPGCSSIEI 583
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 139/455 (30%), Positives = 217/455 (47%), Gaps = 53/455 (11%)
Query: 5 LHAHVTKTALDSDIYVGNSLI-------HFYGRMALFTDARVLFDKMPFRDVGSWNTLMS 57
+HA + KT L + Y + L+ HF G A +FD + + WNT+
Sbjct: 21 IHAQMIKTGLHNTNYALSKLLEXCVLSPHFDG----LPYAISVFDTIQEPXLLIWNTMFR 76
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ SD L L+ ++ G++ + T L +CA+ G+ +H K G +
Sbjct: 77 GHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDL 136
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L + +L+ MY + +++A ++ D+ S R++VS LI GY ++ A ++FDEI
Sbjct: 137 DLYIHTSLISMYVQNGRLEDAQKVXDK-SSHRDVVSYTALITGYASRGXIESAHKMFDEI 195
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
KD+V W + + G + +EALELFKKM+ V PDE MV+VLSAC+ +++ GR
Sbjct: 196 PVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGR 255
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH +I + + + ALID+YSKCG LE A F KDV++W T+I G +
Sbjct: 256 QVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMN 315
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF----RRMGGVYRVQPT 353
L EAL +F M R G KPN+ T +S+L+AC H G I G + +R+ GV
Sbjct: 316 LYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSL 375
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIM----------------------PAEDKF----- 386
L+D+ ++ G + A++ M A D F
Sbjct: 376 ---RTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRK 432
Query: 387 -------ISYKALLSACITYSEFDLGKKVANNMMK 414
I++ LLSAC DLG+ + +M +
Sbjct: 433 NGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTR 467
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 150/339 (44%), Gaps = 67/339 (19%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ + ++ + N+LI Y + A LF + +DV SWNTL+ Y
Sbjct: 253 LGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYT 312
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYM 118
+ E L+LF+ ++ G + +T++ + SACA L + G+ +H Y K G+
Sbjct: 313 HMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNA 372
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ +L+ MYAKC +++ A ++FD M R++ S N +I G+
Sbjct: 373 SSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGF----------------- 414
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
MHG A A ++F +M G+ PD+ V +LSACS L GR
Sbjct: 415 ---------AMHGRANA-----AFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRH 460
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+ R ++T+D Y LE + MI+ + GL
Sbjct: 461 IFR-----SMTRD----------YKLMPKLEH---------------YGCMIDLXGHSGL 490
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
EA ++ ME ++P+ + S+L AC+ G + G
Sbjct: 491 FKEAEKMINTME---MEPDGVIWCSLLKACKMHGNVELG 526
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 160/498 (32%), Positives = 260/498 (52%), Gaps = 69/498 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY---GRM-------------------ALFT---- 35
G+ +H HV K D D+YV SLI Y GR+ AL T
Sbjct: 94 GQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYAS 153
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
A+ +FD++P +DV SWN ++S Y + + + L LFK+++ + D+ T+ +
Sbjct: 154 RGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATV 213
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+ + G+ VH + G L + NAL+ +Y+KC E
Sbjct: 214 VSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGE---------------- 257
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
V+ A E+ + + +KD++ W +++ G +EAL LF++M+
Sbjct: 258 ----------------VETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 301
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN----NITQDAFVKTALIDMYSKCG 266
G TP++ M+S+L AC+ L + GR +H +I + +T + ++T+LIDMY+KCG
Sbjct: 302 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCG 361
Query: 267 SLEEAL-VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
++ A V+ + + TW MI G A +G N A +F +M + GI+P++ TFV +L
Sbjct: 362 DIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLL 421
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+AC HSG++ G +FR M Y + P +EH+ C++DLL +GL +AEE I MP E
Sbjct: 422 SACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPD 481
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
+ + +LL AC + +LG+ A ++K+ ++ +YVLLSN YA G W EV + R
Sbjct: 482 GVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTL 541
Query: 446 MKELQTRKK-PGNSIIDL 462
+ + +KK PG S I++
Sbjct: 542 LNDKGMKKKVPGCSSIEI 559
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 167/298 (56%), Gaps = 1/298 (0%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99
+F+ +P + WN + + SD L L+ +I G++ + T L +CA+ +
Sbjct: 31 VFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKT 90
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
G+ +H + K+G + L + +L+ MYA+ +++A ++FD S R++VS LI
Sbjct: 91 FKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDR-SSHRDVVSYTALIT 149
Query: 160 GYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
GY ++ A+++FDEI KD+V W +M+ G + ++ALELFK+M+ V PDE
Sbjct: 150 GYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDEST 209
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279
M +V+SAC+ +++ GR VH +I + + + ALID+YSKCG +E A
Sbjct: 210 MATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLS 269
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
KDV++W T+I G + L EAL +F +M R G PN+ T +S+L AC H G I G
Sbjct: 270 NKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 327
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 140/304 (46%), Gaps = 39/304 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ + S++ + N+LI Y + A L + + +DV SWNTL+ Y
Sbjct: 225 LGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYT 284
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK----VGLE 116
+ E L+LF++++ G + +T++ + ACA L + G+ +H Y K V +
Sbjct: 285 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVT 344
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
++ +L+ MYAKC ++D A ++ D R++ + N +I G+
Sbjct: 345 NASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGF--------------- 389
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
MHG A A ++F +M G+ PD+ V +LSACS L G
Sbjct: 390 -----------AMHGRANA-----AFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLG 433
Query: 237 RLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGL 293
R + R + Q+ NIT +ID+ G +EA ++ + D V W ++++
Sbjct: 434 RNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPME-PDGVIWCSLLKAC 492
Query: 294 ANYG 297
+G
Sbjct: 493 KIHG 496
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 135/290 (46%), Gaps = 39/290 (13%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A VF+ I + + ++W M G + P AL+L+ MI G+ P+ +L +C+
Sbjct: 28 AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE-----------------AL 272
+ G+ +H +L+ D +V T+LI MY++ G LE+ AL
Sbjct: 88 SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTAL 147
Query: 273 VTFYKT--------------DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
+T Y + KDVV+W MI G A G +AL +F +M + +KP+E
Sbjct: 148 ITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDE 207
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
+T +V++AC SG I G Q+ + + ++ L+DL S+ G + A E ++
Sbjct: 208 STMATVVSACAQSGSIELGRQVHSWIND-HGFGSNLKIVNALIDLYSKCGEVETACELLE 266
Query: 379 IMPAEDKFISYKALLSACITYSEFDLGKKVA---NNMMKLGNQSHEAYVL 425
+ +D IS+ L+ Y+ +L K+ M++ G ++ +L
Sbjct: 267 GLSNKD-VISWNTLIGG---YTHMNLYKEALLLFQEMLRSGETPNDVTML 312
>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
Length = 693
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 173/535 (32%), Positives = 259/535 (48%), Gaps = 72/535 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ +HA + L S+ +L + Y + DAR +FD+MP RD +WN +++ Y
Sbjct: 35 GRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYAR 94
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N S ++ Q G D +TLV + ACA LH + VH +A + GL+ ++
Sbjct: 95 NGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELV 154
Query: 120 NME-------------------------------NALLLMYAKCKEMDEALRLFDEM--- 145
N+ NA++ YA EA+ LF M
Sbjct: 155 NVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQE 214
Query: 146 -----------------------------------GSRRNIVSLNILINGYIDMELVDLA 170
G N+ N LI Y + DLA
Sbjct: 215 GVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLA 274
Query: 171 REVFDEIVDKDI-VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
+VF+E+ +K + W +M+ G + + PE+A LF +M E V PD +VSV+ A +
Sbjct: 275 AQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVAD 334
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+S+ R +H + +++ + QD +V TALIDMYSKCG + A F + V+TW M
Sbjct: 335 ISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAM 394
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I G ++G G A+ +F +M+ G PNE TF+SVLAAC H+GL+ EG + F M Y
Sbjct: 395 IHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYG 454
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
++P +EH+ +VDLL RAG L +A FIK MP E Y A+L AC + +L ++ A
Sbjct: 455 LEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESA 514
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ +LG + +VLL+N YA W +VA R M++ +K PG SII LK+
Sbjct: 515 QIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKN 569
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 112/253 (44%), Gaps = 34/253 (13%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T L CA L G+ VH GL AL MY KC+ +A R+FD M
Sbjct: 18 TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
SR D V W +++ G + P A+E
Sbjct: 78 PSR--------------------------------DRVAWNAVVAGYARNGLPSSAMEAV 105
Query: 206 KKMIDE--GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
+M E G PD +VSVL AC+ L R VH F L+ + + V TA++D Y
Sbjct: 106 VRMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYC 165
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KCG++E A F ++ V+W MI+G A+ G EA+ +F++M ++G+ +A+ ++
Sbjct: 166 KCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLA 225
Query: 324 VLAACRHSGLITE 336
L AC G + E
Sbjct: 226 ALQACGELGYLDE 238
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 4/181 (2%)
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
P ++L C++ ++L GR VH + + ++ TAL +MY KC +A
Sbjct: 14 PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM--ERKGIKPNEATFVSVLAACRHSG 332
F + +D V W ++ G A GL + A+ +M E G +P+ T VSVL AC +
Sbjct: 74 FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392
+ C+ + + ++D + G + A MP + +S+ A+
Sbjct: 134 AL-HACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNS-VSWNAM 191
Query: 393 L 393
+
Sbjct: 192 I 192
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 159/494 (32%), Positives = 259/494 (52%), Gaps = 65/494 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY---GRM-------------------ALFT---- 35
G+ +H HV K D D+YV SLI Y GR+ AL T
Sbjct: 122 GQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYAS 181
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
A+ +FD++P +DV SWN ++S Y + ++ E L LFK+++ + D+ T+V +
Sbjct: 182 KGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSV 241
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+ + G+ VH + D+ G N
Sbjct: 242 VSACAQSASIELGRQVHSW--------------------------------IDDHGFGSN 269
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+ +N LI+ YI V+ A +F+ + KD++ W +++ G +EAL LF++M+
Sbjct: 270 LKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 329
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ--NNITQDAFVKTALIDMYSKCGSL 268
G +P++ M+S+L AC+ L ++ GR +H +I + + + +T+LIDMY+KCG +
Sbjct: 330 SGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDI 389
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E A F + + +W MI G A +G N A +F +M + I+P++ TFV +L+AC
Sbjct: 390 EAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSAC 449
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
HSG++ G +FR M Y++ P +EH+ C++DLL +GL +AEE I M E +
Sbjct: 450 SHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVI 509
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+ +LL AC Y+ +LG+ A N++K+ ++ +YVLLSN YA G W EVA+ R + +
Sbjct: 510 WCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLND 569
Query: 449 LQTRKKPGNSIIDL 462
+K PG S I++
Sbjct: 570 KGMKKVPGCSSIEI 583
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 202/378 (53%), Gaps = 11/378 (2%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIYND 61
+HA + KT L + Y + LI F F A +F+ + ++ WNT+ +
Sbjct: 21 IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 80
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
SD L L+ +I G++ + T L +CA+ + G+ +H + K+G + L +
Sbjct: 81 SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYV 140
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MY + +++A ++FD+ S R++VS LI GY + A+++FDEI KD
Sbjct: 141 HTSLISMYVQNGRLEDARKVFDQ-SSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKD 199
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ G + +EALELFK+M+ V PDE MVSV+SAC+ ++++ GR VH
Sbjct: 200 VVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHS 259
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I + + + ALID+Y KCG +E A F KDV++W T+I G + L E
Sbjct: 260 WIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKE 319
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG----CQLFRRMGGVYRVQPTIEHF 357
AL +F +M R G PN+ T +S+L AC H G I G + +R+ GV H
Sbjct: 320 ALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANAS---SHR 376
Query: 358 VCLVDLLSRAGLLYQAEE 375
L+D+ ++ G + A++
Sbjct: 377 TSLIDMYAKCGDIEAAQQ 394
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 148/329 (44%), Gaps = 43/329 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ + S++ + N+LI Y + A LF+ + ++DV SWNTL+ Y
Sbjct: 253 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYT 312
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYM 118
+ E L+LF++++ G + +T++ + ACA L + G+ +H Y K G+
Sbjct: 313 HMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANA 372
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ +L+ MYAKC +++ A ++F D I+
Sbjct: 373 SSHRTSLIDMYAKCGDIEAAQQVF--------------------------------DSIL 400
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++ + W +M+ G + A ++F +M + PD+ V +LSACS L GR
Sbjct: 401 NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRH 460
Query: 239 VHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL--- 293
+ R + ++ IT +ID+ G +EA + + D V W ++++
Sbjct: 461 IFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMY 520
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFV 322
AN LG + ++E K N ++V
Sbjct: 521 ANVELGESYAQNLIKIEPK----NPGSYV 545
>gi|242066256|ref|XP_002454417.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
gi|241934248|gb|EES07393.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
Length = 703
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 244/461 (52%), Gaps = 32/461 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ HA+V + +L D+ + N+++ FY ++ F + LF+ M RDV +W+ ++ Y
Sbjct: 219 GQACHAYVVRNSLGYDLALVNTVLSFYVKIGDFQASMRLFEGMTDRDVITWSCMIKGYVQ 278
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D+ E L ++++++ + + +TLV + ACA + GK VH A +G E + +
Sbjct: 279 HGDAHEGLRMYREMVKARVQPNSVTLVSVLQACALVVDAEEGKRVHRVAVSIGCELEVGV 338
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MY KC +EA+ LF M KD
Sbjct: 339 ATALVDMYMKCSCHEEAMCLFHRMPK--------------------------------KD 366
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G + + P E+L +FK M+ + PD MV VL+ACS + +H
Sbjct: 367 VVAWAAVIGGLTQNELPGESLHVFKCMLLDDHVPDAITMVKVLAACSEFGGTRLAICLHG 426
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++++N +AFV AL+D+YSKCG ++ A+ F T KD+V W +MI G +GLG E
Sbjct: 427 YLVRNGFNNNAFVAAALLDLYSKCGDIDSAVRVFEGTTEKDIVVWGSMIAGYGAHGLGQE 486
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ ++ +M I+PN TFVSVL+AC HSGL+ EG Q+F M V+ V P EH +V
Sbjct: 487 AVALYQRMIASSIQPNSVTFVSVLSACSHSGLVQEGIQIFDSMTQVFGVVPNAEHQSAMV 546
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +A FI+ M ++ ALL+AC ++ + K A +++KL
Sbjct: 547 DLLGRAGELQEAIRFIRGMDGRAVAHTWCALLAACREHNNTKMSKVAAKSLLKLDPDHVG 606
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y LL+N YA + W V + R ++ RK PG S +++
Sbjct: 607 YYNLLTNIYAYDEKWESVKDTRDMVRGRDLRKVPGYSSVEV 647
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 144/318 (45%), Gaps = 50/318 (15%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR LFD+ P N L+ + ++L +L + D T +L ACA
Sbjct: 53 ARDLFDEFPSPTPRLANALLRAHIRARQWRAAILLGPRL---RVRLDGFTFSLLLRACAA 109
Query: 97 LEKLHYGKTVHCYATK--VGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSL 154
L L +G+ VH A + E + A++ MYA+C +M A
Sbjct: 110 LPSLAHGRAVHAVAIRSCTASEDAF-VATAIVQMYARCGDMVGA---------------- 152
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF-KKMIDEGV 213
IN Y +E DIVL S++ G + EEALE F + ++ +GV
Sbjct: 153 ---INAYGVLE-------------KPDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGV 196
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
+VS +SA + L +++ G+ H ++++N++ D + ++ Y K G + ++
Sbjct: 197 MLTPVTLVSAMSAAAQLGHVRKGQACHAYVVRNSLGYDLALVNTVLSFYVKIGDFQASMR 256
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR---- 329
F +DV+TW+ MI+G +G +E LR++ +M + ++PN T VSVL AC
Sbjct: 257 LFEGMTDRDVITWSCMIKGYVQHGDAHEGLRMYREMVKARVQPNSVTLVSVLQACALVVD 316
Query: 330 -------HSGLITEGCQL 340
H ++ GC+L
Sbjct: 317 AEEGKRVHRVAVSIGCEL 334
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 91/171 (53%), Gaps = 5/171 (2%)
Query: 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS 228
LAR++FDE L +++ ++A+Q A+ L ++ V D +L AC+
Sbjct: 52 LARDLFDEFPSPTPRLANALLRAHIRARQWRAAILLGPRL---RVRLDGFTFSLLLRACA 108
Query: 229 SLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+L +L +GR VH +++ ++DAFV TA++ MY++CG + A+ + + D+V T
Sbjct: 109 ALPSLAHGRAVHAVAIRSCTASEDAFVATAIVQMYARCGDMVGAINAYGVLEKPDIVLRT 168
Query: 288 TMIEGLANYGLGNEALRVFYQ-MERKGIKPNEATFVSVLAACRHSGLITEG 337
+++ G G+ EAL F + + +G+ T VS ++A G + +G
Sbjct: 169 SVVTGYEQNGMAEEALEFFARNVVGQGVMLTPVTLVSAMSAAAQLGHVRKG 219
>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
Length = 1530
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 159/462 (34%), Positives = 244/462 (52%), Gaps = 33/462 (7%)
Query: 3 KGLHAHVT-KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LHA +T + L +++ V N L++ Y TDA LFD+MP ++ SW+ ++ +
Sbjct: 1099 KQLHALITTNSVLYNNLTVANKLLYVYVHHKCLTDAYALFDEMPQKNPVSWSIMIGGFVK 1158
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + FK+LI G+ D TL + AC L G+ +HC K GL +
Sbjct: 1159 VGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLHLDHFV 1218
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYAKCK +++ A+ +FD + KD
Sbjct: 1219 CAALVDMYAKCK--------------------------------VIEDAKLLFDVMPSKD 1246
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W M+ G + +E+L LF + +EG PD+ MVS+++AC+ L + R VH
Sbjct: 1247 LVTWTVMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHE 1306
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ +N + D + TA+IDMY+KCG ++ A F K+V++W+ MI +G G +
Sbjct: 1307 YVNRNRFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKK 1366
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M GI PN TFVS+L AC H+GL+ +G L M + V+P I+H C+V
Sbjct: 1367 ALELFPMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMV 1426
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +A FI+ M E + +LL AC + DL +K A ++++L Q+
Sbjct: 1427 DLLGRAGQLTEAFRFIENMTVEKDEGLWSSLLGACRIHKRIDLAEKAAKSLLELQPQNPG 1486
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+LLSN YA G W +VA+ R M + + +K PG + I+LK
Sbjct: 1487 NYILLSNIYANAGQWKDVAKIRDLMTKRKLKKIPGYTWIELK 1528
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 142/292 (48%), Gaps = 34/292 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +H V K L D +V +L+ Y + + DA++LFD MP +D+ +W ++ Y
Sbjct: 1199 MGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYA 1258
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ ++ E L+LF L EG V DKI +V + +ACA+L ++ + VH Y + +
Sbjct: 1259 ECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDVI 1318
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ A++ MYAKC ++D A +FD M +N++S + +I Y
Sbjct: 1319 LGTAMIDMYAKCGDVDSAREIFDNM-HHKNVISWSAMIAAY------------------- 1358
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
HG Q ++ALELF M+ G+ P+ VS+L ACS ++ G +
Sbjct: 1359 -------GYHG-----QGKKALELFPMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLL 1406
Query: 241 RFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYK-TDCKDVVTWTTMI 290
+ ++ + D T ++D+ + G L EA T KD W++++
Sbjct: 1407 SLMWESFGVRPDIKHHTCMVDLLGRAGQLTEAFRFIENMTVEKDEGLWSSLL 1458
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/415 (34%), Positives = 235/415 (56%), Gaps = 32/415 (7%)
Query: 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH 107
+V +WNT++ Y + + + ++Q++ + D T L A ++ + G+ +H
Sbjct: 82 NVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIH 141
Query: 108 CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
+ G E ++ ++N+LL +YA C + + A ++F+ M R
Sbjct: 142 SVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKER------------------- 182
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227
D+V W SM++G +P EAL LF++M EGV PD +VS+LSA
Sbjct: 183 -------------DLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSAS 229
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+ L L+ GR VH ++L+ +++++ V +L+D+Y+KCG++ EA F + ++ V+WT
Sbjct: 230 AELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWT 289
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
++I GLA G G EAL +F +ME +G+ P+E TFV VL AC H G++ EG + FRRM
Sbjct: 290 SLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEE 349
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
+ P IEH+ C+VDLLSRAGL+ QA E+I+ MP + + ++ LL AC + LG+
Sbjct: 350 CGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEI 409
Query: 408 VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++++ L + YVLLSN YA E W++V RR+M + +K PG S+++L
Sbjct: 410 ARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVEL 464
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 143/316 (45%), Gaps = 37/316 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+ + +S ++V NSL+H Y A +F+ M RD+ +WN++++ +
Sbjct: 137 GEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFAL 196
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF+++ EG+ D T+V L SA A L L G+ VH Y KVGL ++
Sbjct: 197 NGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHV 256
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+LL +YAKC + EA R+F EM S RN VS
Sbjct: 257 TNSLLDLYAKCGAIREAQRVFSEM-SERNAVS---------------------------- 287
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVH 240
W S++ G EEALELFK+M +G+ P E V VL ACS L G
Sbjct: 288 ---WTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFR 344
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL---ANY 296
R + I ++D+ S+ G +++A + + V W T++ +
Sbjct: 345 RMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHL 404
Query: 297 GLGNEALRVFYQMERK 312
GLG A +E K
Sbjct: 405 GLGEIARSHLLNLEPK 420
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 10/228 (4%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A VF I + ++ W +++ G ++ P A +++M+ V PD +L A S
Sbjct: 71 AYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISK 130
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
N++ G +H ++N FV+ +L+ +Y+ CG E A F +D+V W +M
Sbjct: 131 SLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSM 190
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I G A G NEAL +F +M +G++P+ T VS+L+A G + +L RR+ VY
Sbjct: 191 INGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGAL----ELGRRV-HVYL 245
Query: 350 VQPTI---EHFV-CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
++ + H L+DL ++ G + +A+ M +E +S+ +L+
Sbjct: 246 LKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEM-SERNAVSWTSLI 292
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 36/196 (18%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G+ +H ++ K L + +V NSL+ Y + +A+ +F +M R+ SW +L+
Sbjct: 237 LGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLA 296
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N F + E L LFK++ +G+V +IT V + AC+ HC G EY
Sbjct: 297 VNGFGE--EALELFKEMEGQGLVPSEITFVGVLYACS-----------HCGMLDEGFEYF 343
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI- 177
M+ +E G I +++ LV A E +
Sbjct: 344 RRMK--------------------EECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMP 383
Query: 178 VDKDIVLWRSMMHGCV 193
V + V+WR+++ C
Sbjct: 384 VQPNAVIWRTLLGACT 399
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 156/464 (33%), Positives = 258/464 (55%), Gaps = 5/464 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +H H KT D +V L+ Y ++ A LF +V + +L+ + F
Sbjct: 44 QSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSF 103
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ + LF Q++ + ++AD + + AC L GK VH K GL ++
Sbjct: 104 GSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIA 163
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
L+ +Y KC +++A ++FD M R++V+ ++I D +V+ A EVF+E+ +D
Sbjct: 164 LKLVELYGKCGVLEDARKMFDGM-PERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDT 222
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W ++ G V+ + LE+F++M +GV P+E V VLSAC+ L L+ GR +H +
Sbjct: 223 VCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAY 282
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+ + + + FV ALI+MYS+CG ++EA F KDV T+ +MI GLA +G EA
Sbjct: 283 MRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEA 342
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
+ +F +M ++ ++PN TFV VL AC H GL+ G ++F M ++ ++P +EH+ C+VD
Sbjct: 343 VELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVD 402
Query: 363 LLSRAGLLYQAEEFIKIM--PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+L R G L +A +FI M A+DK + +LLSAC + +G+KVA + +
Sbjct: 403 ILGRVGRLEEAFDFIGRMGVEADDKMLC--SLLSACKIHKNIGMGEKVAKLLSEHYRIDS 460
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
++++LSNFYA G W+ AE R M++ K+PG S I++ +
Sbjct: 461 GSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNN 504
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 132/304 (43%), Gaps = 66/304 (21%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDV------------ 49
GK +H V K+ L D + L+ YG+ + DAR +FD MP RDV
Sbjct: 144 GKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFD 203
Query: 50 -GSWNTLMSIYNDFSDSGEV------------------LILFKQLIFEGIVADKITLVIL 90
G + ++N+ V L +F+++ +G+ +++T V +
Sbjct: 204 CGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCV 263
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+L L G+ +H Y K G+E + AL+ MY++C ++DEA LFD G R
Sbjct: 264 LSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFD--GVRV- 320
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
KD+ + SM+ G + EA+ELF +M+
Sbjct: 321 -----------------------------KDVSTYNSMIGGLALHGKSIEAVELFSEMLK 351
Query: 211 EGVTPDEEVMVSVLSACS--SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
E V P+ V VL+ACS L +L G + + + I + ++D+ + G L
Sbjct: 352 ERVRPNGITFVGVLNACSHGGLVDLG-GEIFESMEMIHGIEPEVEHYGCMVDILGRVGRL 410
Query: 269 EEAL 272
EEA
Sbjct: 411 EEAF 414
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 105/231 (45%), Gaps = 11/231 (4%)
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
V++S+L + N ++ + +H ++ +QD FV L+ +Y K ++ A+ F T
Sbjct: 28 VIISLLH--KNRKNPKHVQSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCT 85
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338
+V +T++I+G ++G +A+ +F QM RK + + ++L AC + G
Sbjct: 86 QNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGK 145
Query: 339 QLFRRMGGVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
++ G V + ++ + LV+L + G+L A + MP D ++ ++ +C
Sbjct: 146 EVH---GLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERD-VVACTVMIGSC 201
Query: 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
+ +V N M G + + ++ + G + E R M+
Sbjct: 202 FDCGMVEEAIEVFNEM---GTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQ 249
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 55/95 (57%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +HA++ K ++ + +V +LI+ Y R +A+ LFD + +DV ++N+++
Sbjct: 275 LGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLA 334
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
S E + LF +++ E + + IT V + +AC+
Sbjct: 335 LHGKSIEAVELFSEMLKERVRPNGITFVGVLNACS 369
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 146/464 (31%), Positives = 249/464 (53%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + + DS + + +L+ Y + AR+LFD M R+V SWN+++ Y
Sbjct: 254 IGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYV 313
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E +++F++++ EG+ ++++ ACA L L G+ +H K+ +E L+
Sbjct: 314 QNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH----KLSVELELD 369
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
RN+ +N LI+ Y + VD A +F ++ +
Sbjct: 370 ----------------------------RNVSVVNSLISMYCKCKEVDTAASMFGKLQSR 401
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
IV W +M+ G + +P EAL F +M V PD VSV++A + LS + + +H
Sbjct: 402 TIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIH 461
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++N + ++ FV TAL+DMY+KCG++ A + F + V TW MI+G +G+G
Sbjct: 462 GVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGK 521
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F +M++ I+PN TF+SV++AC HSGL+ G + F M Y ++P+++H+ +
Sbjct: 522 AALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAM 581
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +A +FI MP + Y A+L AC + + +KVA + +L +
Sbjct: 582 VDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDG 641
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+VLL+N Y W +V + R +M RK PG S++++K+
Sbjct: 642 GYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKN 685
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 169/327 (51%), Gaps = 32/327 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K+ D++ L + Y + +AR +FD+MP RD+ SWNT+++ Y+
Sbjct: 153 VGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYS 212
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L + + E + IT+V + A + L + GK +H YA + G + ++N
Sbjct: 213 QNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVN 272
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAKC + A LFD M RN+VS N +I+ Y+ E
Sbjct: 273 IATALVDMYAKCGSLKTARLLFDGM-LERNVVSWNSMIDAYVQNE--------------- 316
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
P+EA+ +F+KM+DEGV P + ++ L AC+ L +L+ GR +H
Sbjct: 317 ----------------NPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH 360
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ ++ + ++ V +LI MY KC ++ A F K + +V+W MI G A G
Sbjct: 361 KLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPI 420
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAA 327
EAL F QM+ + +KP+ T+VSV+ A
Sbjct: 421 EALNYFSQMQARTVKPDTFTYVSVITA 447
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 32/314 (10%)
Query: 24 LIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVAD 83
L+ + R +A +F+ + + + T++ + SD + L F ++ + +
Sbjct: 75 LVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPV 134
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
L C +L GK +H K G L L MYAKC+++ EA
Sbjct: 135 VYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEA----- 189
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
R+VFD + ++D+V W +++ G + ALE
Sbjct: 190 ---------------------------RKVFDRMPERDLVSWNTIVAGYSQNGMARMALE 222
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
+ M +E + P +VSVL A S+L ++ G+ +H + ++ + TAL+DMY+
Sbjct: 223 MVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYA 282
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KCGSL+ A + F ++VV+W +MI+ EA+ +F +M +G+KP + + +
Sbjct: 283 KCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMG 342
Query: 324 VLAACRHSGLITEG 337
L AC G + G
Sbjct: 343 ALHACADLGDLERG 356
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 133/281 (47%), Gaps = 13/281 (4%)
Query: 122 ENALLLMYAKC---KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
E+ L+ +C KE+ L L + G + + L++ + VD A VF+ I
Sbjct: 37 EHPAALLLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPID 96
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K VL+ +M+ G K ++AL+ F +M D+ V P +L C + L+ G+
Sbjct: 97 KKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKE 156
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++++ + D F T L +MY+KC + EA F + +D+V+W T++ G + G+
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGM 216
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
AL + M + +KP+ T VSVL A LI G ++ Y ++ + V
Sbjct: 217 ARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHG-----YAMRAGFDSLV 271
Query: 359 ----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
LVD+ ++ G L A M E +S+ +++ A
Sbjct: 272 NIATALVDMYAKCGSLKTARLLFDGM-LERNVVSWNSMIDA 311
>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 164/501 (32%), Positives = 252/501 (50%), Gaps = 42/501 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K +SD+++ NSL+ Y + A ++F MP V SWN +++ Y
Sbjct: 242 GQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQ 301
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S S + + +++ + G D+IT V + AC + + G+ + + L
Sbjct: 302 KSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSW--- 358
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRR---NIVSLNILINGYIDMEL------------ 166
N +L Y++ + EA++LF EM R + +L I+++ M L
Sbjct: 359 -NTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQ 417
Query: 167 -----------------------VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
V++A+ +FD I + DIV W SMM G +EA
Sbjct: 418 KAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFT 477
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
FKKM ++G+ P + +VLS C+ LS+L GR VH I + DAFV +ALIDMYS
Sbjct: 478 FFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYS 537
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KCG ++ A F K+ VTW MI G A G G+EA+ ++ M G KP+ TFV+
Sbjct: 538 KCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVA 597
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
VL AC HSGL+ G ++F M + V+P ++H+ C++D L RAG L++AE I MP +
Sbjct: 598 VLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCK 657
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443
I ++ LLS+C Y++ L ++ A + L Q+ YVLL+N Y+ G W + R
Sbjct: 658 YDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVR 717
Query: 444 RNMKELQTRKKPGNSIIDLKH 464
M Q K PG S I+ K+
Sbjct: 718 ELMSYNQVVKDPGYSWIEHKN 738
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 171/359 (47%), Gaps = 48/359 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HAH+ ++ L D ++ N LI FY + +R LFD+MP RD+ +WN ++ Y
Sbjct: 24 GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83
Query: 62 FSDSGEVLILFKQLIFEGIVADK--ITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
S+ + +LF ++ IV+ I+ + AC L + G+ H + K+GL+ +
Sbjct: 84 ASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECGRRCHGISIKIGLDNNI 143
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NALL MYAKC+ + +A+ + F ++ +
Sbjct: 144 YVGNALLGMYAKCRCIGDAI--------------------------------QAFGDVPE 171
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS---------- 229
+ V + +MM G + Q EA LF+ M+ + D + SVL CS
Sbjct: 172 PNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHD 231
Query: 230 ----LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
LS+ +G+ VH +++ D + +L+DMY+K G+++ A + F VV+
Sbjct: 232 SNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVS 291
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
W MI G ++A+ +M+ G +P+E T+V++L AC SG I G Q+F M
Sbjct: 292 WNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGM 350
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 30/246 (12%)
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
L L C + GK +H + + L + N L+ YAKC +D + RLFD+M
Sbjct: 8 LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQM- 66
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
+R+I + N ++ Y ++ A +F E+ +++IV W +++ +
Sbjct: 67 PKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRN----------- 115
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
AC +L +++ GR H ++ + + +V AL+ MY+KC
Sbjct: 116 ------------------GACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCR 157
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+ +A+ F + V++T M+ GLA+ NEA R+F M R I + + SVL
Sbjct: 158 CIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLG 217
Query: 327 ACRHSG 332
C G
Sbjct: 218 VCSRGG 223
>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 529
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 149/462 (32%), Positives = 252/462 (54%), Gaps = 34/462 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + K + ++ + +L++ YG + +FD+MP RD+ WN L++ Y
Sbjct: 98 GEQIHGQIFKLGFEFEVIIQTALLNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAH 157
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ +V + ++ + + +T V + S C+ L L GK VH Y TK +E+ + +
Sbjct: 158 GNCPYKVREVSYDMVRSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFV 217
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+++Y+KC + +A+++F M RN+VS
Sbjct: 218 HNALIVVYSKCGSIRDAVQVFQLM-PMRNVVS---------------------------- 248
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
W S+++G P EAL FK+M E + PDE ++ V+ CS L + + G + +
Sbjct: 249 ---WTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQ 305
Query: 242 FILQNNITQDA-FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++++ + +++ + AL+DM++KCG++ A F + K +V+WT MI+GLA +G G
Sbjct: 306 YVVKIGLLKESPAIANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLAMHGHGL 365
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL F QM+R+G KP+ F+S+L+AC H+GL+ EG + F M Y + P +EH+ C+
Sbjct: 366 SALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHISPWMEHYGCM 425
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L RAGL+ +A +F++ MP + I ++ LL AC T L +V N + +LG +
Sbjct: 426 VDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACHTQGNISLANQVMNYLCELGPKKS 485
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQ-TRKKPGNSIID 461
E YVLLSN +A W V E R+ M + T++ PG S I+
Sbjct: 486 EDYVLLSNLFASNAEWDNVGEVRKEMGDRGVTKQDPGCSFIE 527
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 189/392 (48%), Gaps = 40/392 (10%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
+ H+ L S + V + I G ++ AR + D++ D +WNT++ Y + +D
Sbjct: 4 NGHLHNPTLASKLVVSFASITLPGTTSV---ARRIADQIDGLDTYTWNTIIRGYLEGNDP 60
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
E ++++ + +G+ D TLV + AC + G+ +H K+G E+ + ++ AL
Sbjct: 61 EEAILVYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTAL 120
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
L +Y LFDE + I FDE+ +D+V+W
Sbjct: 121 LNLYG----------LFDEDCGLQQI----------------------FDEMPQRDLVMW 148
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+++ P + E+ M+ V P+ VS+LS CSSL L+ G+ VH ++ +
Sbjct: 149 NALIAAYAHGNCPYKVREVSYDMVRSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTK 208
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
N I D FV ALI +YSKCGS+ +A+ F ++VV+WT++I G ++ NEAL
Sbjct: 209 NLIEFDVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGF 268
Query: 306 FYQMERKGIKPNEATFVSVLAACR--HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
F QME + I+P+E T + V+ C S + E + G+ + P I + L+D+
Sbjct: 269 FKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGLLKESPAIAN--ALMDM 326
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
++ G + +A + M E +S+ ++
Sbjct: 327 HAKCGNINRACQIFDGM-EEKTIVSWTIMIQG 357
>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Vitis vinifera]
Length = 847
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 164/501 (32%), Positives = 252/501 (50%), Gaps = 42/501 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K +SD+++ NSL+ Y + A ++F MP V SWN +++ Y
Sbjct: 271 GQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQ 330
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S S + + +++ + G D+IT V + AC + + G+ + + L
Sbjct: 331 KSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSW--- 387
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRR---NIVSLNILINGYIDMEL------------ 166
N +L Y++ + EA++LF EM R + +L I+++ M L
Sbjct: 388 -NTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQ 446
Query: 167 -----------------------VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
V++A+ +FD I + DIV W SMM G +EA
Sbjct: 447 KAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFT 506
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
FKKM ++G+ P + +VLS C+ LS+L GR VH I + DAFV +ALIDMYS
Sbjct: 507 FFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYS 566
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KCG ++ A F K+ VTW MI G A G G+EA+ ++ M G KP+ TFV+
Sbjct: 567 KCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVA 626
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
VL AC HSGL+ G ++F M + V+P ++H+ C++D L RAG L++AE I MP +
Sbjct: 627 VLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCK 686
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443
I ++ LLS+C Y++ L ++ A + L Q+ YVLL+N Y+ G W + R
Sbjct: 687 YDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVR 746
Query: 444 RNMKELQTRKKPGNSIIDLKH 464
M Q K PG S I+ K+
Sbjct: 747 ELMSYNQVVKDPGYSWIEHKN 767
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/388 (26%), Positives = 172/388 (44%), Gaps = 77/388 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HAH+ ++ L D ++ N LI FY + +R LFD+MP RD+ +WN ++ Y
Sbjct: 24 GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83
Query: 62 FSDSGEVLILFKQLI-------------------------------FEGIVADKITLVIL 90
S+ + +LF ++ EG V TL +
Sbjct: 84 ASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASV 143
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SAC L + G+ H + K+GL+ + + NALL MYAKC+ + +A+
Sbjct: 144 LSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAI----------- 192
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+ F ++ + + V + +MM G + Q EA LF+ M+
Sbjct: 193 ---------------------QAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLR 231
Query: 211 EGVTPDEEVMVSVLSACSS--------------LSNLQYGRLVHRFILQNNITQDAFVKT 256
+ D + SVL CS LS+ +G+ VH +++ D +
Sbjct: 232 NRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNN 291
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
+L+DMY+K G+++ A + F VV+W MI G ++A+ +M+ G +P
Sbjct: 292 SLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEP 351
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRM 344
+E T+V++L AC SG I G Q+F M
Sbjct: 352 DEITYVNMLVACIKSGDIEAGRQMFDGM 379
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 126/246 (51%), Gaps = 1/246 (0%)
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
L L C + GK +H + + L + N L+ YAKC +D + RLFD+M
Sbjct: 8 LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQM- 66
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
+R+I + N ++ Y ++ A +F E+ +++IV W +++ + ++AL ++
Sbjct: 67 PKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYY 126
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
+M EG P + SVLSAC +L +++ GR H ++ + + +V AL+ MY+KC
Sbjct: 127 RMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCR 186
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+ +A+ F + V++T M+ GLA+ NEA R+F M R I + + SVL
Sbjct: 187 CIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLG 246
Query: 327 ACRHSG 332
C G
Sbjct: 247 VCSRGG 252
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 234/400 (58%), Gaps = 7/400 (1%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
+ +L+ QL+ I ++ T L +C+ GK +H + K GL + L+
Sbjct: 113 QAFLLYVQLLSSEINPNEFTFSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLV 168
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
+YAK ++ A ++FD M R++VS +I Y V+ AR +FD + ++DIV W
Sbjct: 169 DVYAKGGDVVSAQKVFDRM-PERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWN 227
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
M+ G + P +AL LF+K++ EG PDE +V+ LSACS + L+ GR +H F+
Sbjct: 228 VMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKS 287
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
+ I + V T LIDMYSKCGSLEEA++ F T KD+V W MI G A +G +ALR+
Sbjct: 288 SRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRL 347
Query: 306 FYQMER-KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
F +M+ G++P + TF+ L AC H+GL+ EG ++F MG Y ++P IEH+ CLV LL
Sbjct: 348 FNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLL 407
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
RAG L +A E IK M + + + ++L +C + +F LGK++A ++ L ++ YV
Sbjct: 408 GRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYV 467
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
LLSN YA G + VA+ R MKE K+PG S I++++
Sbjct: 468 LLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIEN 507
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 121/270 (44%), Gaps = 42/270 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGR----------------------MALFT---- 35
GK +H HV K L D YV L+ Y + A+ T
Sbjct: 145 GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAK 204
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG-IVADKITLVI 89
AR LFD M RD+ SWN ++ Y + L+LF++L+ EG D+IT+V
Sbjct: 205 QGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVA 264
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
SAC+++ L G+ +H + + + + L+ MY+KC ++EA+ +F++ R+
Sbjct: 265 ALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDT-PRK 323
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEI-----VDKDIVLWRSMMHGCVKAKQPEEALEL 204
+IV+ N +I GY A +F+E+ + + + + C A E + +
Sbjct: 324 DIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRI 383
Query: 205 FKKMIDE-GVTPDEE---VMVSVLSACSSL 230
F+ M E G+ P E +VS+L L
Sbjct: 384 FESMGQEYGIKPKIEHYGCLVSLLGRAGQL 413
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 154/327 (47%), Gaps = 50/327 (15%)
Query: 110 ATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV------SLNI-LINGYI 162
+T + L L ++ K + +DE L++ + R N++ LN+ L Y
Sbjct: 17 STTATARFRLPPPEKLAVLIDKSQSVDEVLQIHAAI-LRHNLLLHPRYPVLNLKLHRAYA 75
Query: 163 DMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS 222
+ + +F + +D D+ L+ + ++ ++A L+ +++ + P+E S
Sbjct: 76 SHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSS 135
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL-----------EEA 271
+L +CS+ S G+L+H +L+ + D +V T L+D+Y+K G + E +
Sbjct: 136 LLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERS 191
Query: 272 LVT-------------------FYKTDC-KDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
LV+ + + C +D+V+W MI+G A +G N+AL +F ++
Sbjct: 192 LVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLA 251
Query: 312 KG-IKPNEATFVSVLAACRHSGLITEG--CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
+G KP+E T V+ L+AC G + G +F + R++ ++ L+D+ S+ G
Sbjct: 252 EGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSS---RIRLNVKVCTGLIDMYSKCG 308
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSA 395
L +A P +D +++ A+++
Sbjct: 309 SLEEAVLVFNDTPRKD-IVAWNAMIAG 334
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 77/197 (39%), Gaps = 41/197 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V + + ++ V LI Y + +A ++F+ P +D+ +WN +++ Y
Sbjct: 278 GRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAM 337
Query: 62 FSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S + L LF ++ G+ IT + ACA GL
Sbjct: 338 HGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAH----------------AGL----- 376
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGS----RRNIVSLNILINGYIDMELVDLAREVFDE 176
++E +R+F+ MG + I L++ + A E
Sbjct: 377 --------------VNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKN 422
Query: 177 I-VDKDIVLWRSMMHGC 192
+ +D D VLW S++ C
Sbjct: 423 MNMDADSVLWSSVLGSC 439
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 159/463 (34%), Positives = 263/463 (56%), Gaps = 7/463 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + K + S++++ N LI Y R AR +FD+MP +D S+N+++ +
Sbjct: 144 GKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMI---DG 200
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ SG I + +F+ + + L+ S + G + + E L
Sbjct: 201 YVKSGT--IDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDLVS 258
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N ++ +AKC ++ A LF+ M +R+++S + +I+GY + + +AR +FDE+ DKD
Sbjct: 259 WNTIIGGFAKCGRIEFAHSLFNRM-PKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKD 317
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V + ++M G + EALE+F +M + ++PDE +V LSA S L +++ +H
Sbjct: 318 VVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMH 377
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ L+N I+ V ALIDMYSKCGS+E A++ F D K + W MI G+A GLG
Sbjct: 378 NYFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGK 437
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A + +M R +KP+ TF+ VL AC H+GL+ EG F M V++++P ++H+ C+
Sbjct: 438 LAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHYGCM 497
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L +AGL+ A +FI+ MP E I ++ LLSAC + F +G+ +A ++M + + +
Sbjct: 498 VDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFTIGELIAKHLMTMDSCNS 557
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+YVLLSN YA G W+ ++ R MK+ K PG S I+L+
Sbjct: 558 SSYVLLSNIYARLGLWSAASKVRMMMKKQNLTKVPGCSWIELE 600
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 178/355 (50%), Gaps = 26/355 (7%)
Query: 27 FYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKIT 86
F+ R A+ R D PF WN ++ Y+ ++ L+LF ++ G DK +
Sbjct: 72 FFTRYAVQRIRRNHLDDDPFL----WNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFS 127
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
++ ACAR+ + GK +H K+ + L + N L+ MY +C +++ A ++FD M
Sbjct: 128 FSLILKACARVCLVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRM- 186
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIV--DKDIVLWRSMMHGCVKAKQP-EEALE 203
++ VS N +I+GY+ +DLARE+FD + DK+++ W SM+ G + K ALE
Sbjct: 187 PIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALE 246
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ-DAFVKTALIDMY 262
LF+KM + + ++ + C GR+ L N + + D + +ID Y
Sbjct: 247 LFEKMPERDLV-SWNTIIGGFAKC--------GRIEFAHSLFNRMPKRDVISWSNMIDGY 297
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATF 321
+K G ++ A F + KDVV + T++ G A G EAL +F++M+R+ + P+E T
Sbjct: 298 AKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTL 357
Query: 322 VSVLAACRHSGLITEGCQL---FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
V L+A G + + + F G + T + V L+D+ S+ G + A
Sbjct: 358 VVALSAISQLGHVEKAASMHNYFLENG----ISVTGKVAVALIDMYSKCGSIENA 408
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 130/301 (43%), Gaps = 23/301 (7%)
Query: 166 LVDLAREVF----------DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215
LV+ AR VF +D D LW +++ +P AL LF M++ G
Sbjct: 64 LVEFARYVFFTRYAVQRIRRNHLDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCV 123
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
D+ +L AC+ + ++ G+ +H +++ I + F+ LI MY +CG +E A F
Sbjct: 124 DKFSFSLILKACARVCLVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVF 183
Query: 276 YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA-CRHSGLI 334
+ +D V++ +MI+G G + A +F M + N ++ S+L + I
Sbjct: 184 DRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLE--DKNLISWNSMLGGFAQTKDGI 241
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
+LF +M + + + ++ ++ G + A MP D IS+ ++
Sbjct: 242 GLALELFEKMP-----ERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRD-VISWSNMID 295
Query: 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK 454
+ + + + + M ++ A+ + YA G++TE E M+ Q+
Sbjct: 296 GYAKLGDIKVARTLFDEM---PDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQR-QSNLS 351
Query: 455 P 455
P
Sbjct: 352 P 352
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 163/464 (35%), Positives = 254/464 (54%), Gaps = 7/464 (1%)
Query: 3 KGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +H H+ + L Y+ NSL+ FY + A +F MP DV S+N ++ Y
Sbjct: 149 KQIHCHIIVSGCLSLGNYLWNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAK 208
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L L+ +++ +GI D+ TL+ L C L + GK VH + + G Y N+
Sbjct: 209 QGFGLEALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNL 268
Query: 122 --ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
NALL MY KCKE A R FD + ++++ S N ++ G++ + ++ A+ VFD++
Sbjct: 269 ILRNALLDMYFKCKESGLAKRAFDAL-KKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQ 327
Query: 180 KDIVLWRSMMHGCVKAKQPEEAL-ELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+D+V W S++ K + A+ ELF +M I E V PD MVS++S ++ L +GR
Sbjct: 328 RDLVSWNSLLFCYSKKGCDQRAVRELFYEMLIVEKVKPDRVTMVSLISGAANNGELSHGR 387
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH +++ + DAF+ +ALIDMY KCG +E A + F KDV WT+MI G A +G
Sbjct: 388 WVHGLMIRLQLEGDAFLSSALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMITGFAFHG 447
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G +AL++F +M+ + + PN+ T ++VL AC HSGL+ EG +F M + P EH+
Sbjct: 448 YGQQALQLFKRMQEEDVTPNKVTLLAVLTACSHSGLVEEGLHVFYHMKEKFGFHPETEHY 507
Query: 358 VCLVDLLSRAGLLYQAEEFIK-IMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
LVDLL RAG L +A++ ++ MP + ++LSAC + + + + ++KL
Sbjct: 508 GSLVDLLCRAGRLEEAKDIVQNKMPMRPSQSMWGSILSACREGEDIETAELALSELLKLE 567
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
+ YVLLSN YA G W + R M+ +K G S +
Sbjct: 568 PEKEGGYVLLSNIYATVGRWGYSDKTREAMESRGVKKTAGYSSV 611
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 51/94 (54%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + + L+ D ++ ++LI Y + L A ++F +DV W ++++ +
Sbjct: 386 GRWVHGLMIRLQLEGDAFLSSALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMITGFAF 445
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
+ L LFK++ E + +K+TL+ + +AC+
Sbjct: 446 HGYGQQALQLFKRMQEEDVTPNKVTLLAVLTACS 479
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 159/466 (34%), Positives = 251/466 (53%), Gaps = 12/466 (2%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + + L + L Y + + LF + P +V W +++ + F
Sbjct: 42 IHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDL 101
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
L + Q++ I + TL L AC LH + VH +A K GL L +
Sbjct: 102 FHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIKFGLSSHLYVSTG 157
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ YA+ ++ A +LFD M R++VS ++ Y ++ AR +F+ + KD+V
Sbjct: 158 LVDAYARGGDVASAQKLFDAM-PERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVC 216
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEG-------VTPDEEVMVSVLSACSSLSNLQYGR 237
W M+ G + P EAL F+KM+ V P+E +V+VLS+C + L+ G+
Sbjct: 217 WNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGK 276
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH ++ N I + V TAL+DMY KCGSLE+A F + KDVV W +MI G +G
Sbjct: 277 WVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHG 336
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+EAL++F++M G+KP++ TFV+VL AC H+GL+++G ++F M Y ++P +EH+
Sbjct: 337 FSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHY 396
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+V+LL RAG + +A + ++ M E + + LL AC +S LG+++A ++ G
Sbjct: 397 GCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGL 456
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
S YVLLSN YA +W VA+ R MK K+PG S I++K
Sbjct: 457 ASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVK 502
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 146/345 (42%), Gaps = 79/345 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR-------------- 47
+ +H+H K L S +YV L+ Y R A+ LFD MP R
Sbjct: 136 ARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAK 195
Query: 48 -----------------DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG-------IVAD 83
DV WN ++ Y E L+ F++++ + +
Sbjct: 196 HGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPN 255
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
+IT+V + S+C ++ L GK VH Y G++ + + AL+ MY KC +++A ++FD
Sbjct: 256 EITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFD 315
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
M +++V+ N +I GY +HG +EAL+
Sbjct: 316 VM-EGKDVVAWNSMIMGY--------------------------GIHGF-----SDEALQ 343
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK--TALIDM 261
LF +M GV P + V+VL+AC+ + G V +++ + V+ ++++
Sbjct: 344 LFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDS-MKDGYGMEPKVEHYGCMVNL 402
Query: 262 YSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGL---ANYGLGNE 301
+ G ++EA LV + + D V W T++ +N LG E
Sbjct: 403 LGRAGRMQEAYDLVRSMEVE-PDPVLWGTLLWACRIHSNVSLGEE 446
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 1/182 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H++V + ++ VG +L+ Y + DAR +FD M +DV +WN+++ Y
Sbjct: 275 GKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGI 334
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLN 120
S E L LF ++ G+ IT V + +ACA + G V G+E +
Sbjct: 335 HGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVE 394
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++ + + M EA L M + V L+ V L E+ + +V
Sbjct: 395 HYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSN 454
Query: 181 DI 182
+
Sbjct: 455 GL 456
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 158/459 (34%), Positives = 245/459 (53%), Gaps = 5/459 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LHA V + LDSD V L Y + L + + + + ++
Sbjct: 43 LHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGL 102
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
L L ++ EG++ TL AC L G+ +H YA K+ L + A
Sbjct: 103 HLPGLALLSDMLSEGLLPTAHTLSASLPAC---RGLSLGRALHAYAFKLALSGDSYVATA 159
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
LL MYA+ + A LFDEM ++VS+ ++ Y +M +D AR +FD + KD +
Sbjct: 160 LLSMYARAGDAAAARALFDEM-PDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFIC 218
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ G + +P EAL+LF++M+ PDE +V VLSA + L ++ G+ +H ++
Sbjct: 219 WNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVK 278
Query: 245 QNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ Q + V TAL+DMY KCGSLE+A+ F+ KD+V W MI G A +G +AL
Sbjct: 279 NSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKAL 338
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
+F Q+ +G+ P + TF+ +L AC HSGL+ EG F+ M Y + P IEH+ C+VDL
Sbjct: 339 EMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDL 398
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L RAGL+ +A ++ + + + +LL+AC + LG+++A+ ++ G + Y
Sbjct: 399 LGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMY 458
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+LLSN YA G W EVA R MK +K+PG S I++
Sbjct: 459 ILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEI 497
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 155/361 (42%), Gaps = 97/361 (26%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP-------------FR 47
+G+ LHA+ K AL D YV +L+ Y R AR LFD+MP +
Sbjct: 137 LGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYA 196
Query: 48 DVGS------------------WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
++G+ WN ++ Y E L LF++++ D++T+V+
Sbjct: 197 NMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVL 256
Query: 90 LFSACARLEKLHYGKTVHCYATKVG-LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ SA A+L + GK +H Y ++ + + AL+ MY KC +++A+ +F +G+
Sbjct: 257 VLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGN- 315
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
++IV N +INGY MHG +ALE+F ++
Sbjct: 316 KDIVVWNAMINGY--------------------------AMHG-----DSRKALEMFVQL 344
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
D+G+ P + + +L+ACS ++ GR S
Sbjct: 345 RDQGLWPTDITFIGLLNACSHSGLVEEGR-----------------------------SF 375
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
+++ Y D K + + M++ L GL EA F+ ++ I P+ +VS+LAAC
Sbjct: 376 FQSMEHEYGIDPK-IEHYGCMVDLLGRAGLIEEA---FHLVQSLTITPDAVMWVSLLAAC 431
Query: 329 R 329
R
Sbjct: 432 R 432
>gi|242045336|ref|XP_002460539.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
gi|241923916|gb|EER97060.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
Length = 630
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 161/499 (32%), Positives = 257/499 (51%), Gaps = 39/499 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDA------------------------ 37
G LHA + + L + + VGNSLI Y + A DA
Sbjct: 92 GAQLHARLLRVGLRALLPVGNSLISMYAKCARAEDAARAFGEMRERNALSWCSLLDAYVA 151
Query: 38 -------RVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+ LFD+MP R+ +WNTL+ Y+ ++ L+LF ++ G+ D TL IL
Sbjct: 152 SDDLRLAQELFDEMPNRNNVAWNTLLMGYSRSGNANHCLLLFNKMRMAGLTCDDATLCIL 211
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
AC L G +H + G M + N+L+ +Y K +D+A+R+F+ M +
Sbjct: 212 VDACTELANPSAGSAIHKIVVQSGWNAMAEVSNSLISLYTKFSLLDDAVRIFESM-EVQT 270
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI- 209
IVS N LI+ Y+ + V+ A +F + + +++ W +M+ G + +EAL LF +M+
Sbjct: 271 IVSWNSLIDAYMKLGCVEKATSLFGSVPETNVISWTAMIGGLARNGLADEALILFVEMLA 330
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
E + PD+ +VL AC++ ++L GR+VH + Q+ +V +LIDMY+KCG LE
Sbjct: 331 HEHIHPDDFTFGAVLHACATAASLASGRMVHCRVFQSGFVSYLYVANSLIDMYAKCGDLE 390
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
F KD+V+W TM+ G A GL NEAL V+ M+ + P+E TF +L AC
Sbjct: 391 GGTNVFSTIVNKDLVSWNTMLFGFAINGLPNEALVVYDSMKSHDVCPDEVTFTGLLTACS 450
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI----KIMPAEDK 385
HSGL+ G F M V+ +QP EH C++D+ +R+G + +A E + +++ +
Sbjct: 451 HSGLLEHGKTFFELMVSVHGIQPKPEHLSCILDMYARSGNITKAMEMLDRYSEMIQTHNS 510
Query: 386 FISYKALLSAC-ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444
I +ALLSAC + + F + +K +M+ + YV+LSN + G W + R
Sbjct: 511 DIR-EALLSACSLEHLNFSVARKAVKDMVATKSAGDVGYVMLSNLFCATGQWNQAERVRI 569
Query: 445 NMKELQTRKKPGNSIIDLK 463
M E +K PG S I+++
Sbjct: 570 AMAEYGIKKSPGCSWIEVQ 588
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 110/361 (30%), Positives = 177/361 (49%), Gaps = 41/361 (11%)
Query: 18 IYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIF 77
+ S I GR AR +FD MP RD +WN +++ Y + L LF +
Sbjct: 11 LVAATSRIASLGRAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALFSR--- 67
Query: 78 EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDE 137
D +L SA A L G +H +VGL +L + N+L+ MYAKC ++
Sbjct: 68 -APAPDAFSLTAALSAAAALRSPTAGAQLHARLLRVGLRALLPVGNSLISMYAKCARAED 126
Query: 138 ALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ 197
A R F EM RN +S L++ Y+ + + LA+E+FDE+ +++ V W +++ G ++
Sbjct: 127 AARAFGEM-RERNALSWCSLLDAYVASDDLRLAQELFDEMPNRNNVAWNTLLMGYSRSGN 185
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN----------- 246
L LF KM G+T D+ + ++ AC+ L+N G +H+ ++Q+
Sbjct: 186 ANHCLLLFNKMRMAGLTCDDATLCILVDACTELANPSAGSAIHKIVVQSGWNAMAEVSNS 245
Query: 247 --------NITQDAF-------VKT-----ALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
++ DA V+T +LID Y K G +E+A F +V++W
Sbjct: 246 LISLYTKFSLLDDAVRIFESMEVQTIVSWNSLIDAYMKLGCVEKATSLFGSVPETNVISW 305
Query: 287 TTMIEGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEG----CQLF 341
T MI GLA GL +EAL +F +M + I P++ TF +VL AC + + G C++F
Sbjct: 306 TAMIGGLARNGLADEALILFVEMLAHEHIHPDDFTFGAVLHACATAASLASGRMVHCRVF 365
Query: 342 R 342
+
Sbjct: 366 Q 366
>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 819
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 159/530 (30%), Positives = 267/530 (50%), Gaps = 69/530 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + ++A ++D V N LI Y + + + AR LFD M +R++ SW T++S Y
Sbjct: 240 GRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQ 299
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S + E + +F + G D + ++C L + G+ +H + K LE +
Sbjct: 300 NSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYV 359
Query: 122 ENALLLMYAKC-------------------------------KEMDEALRLFDEM----- 145
+NAL+ MYAKC +++ EA+ +F M
Sbjct: 360 KNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSL 419
Query: 146 ---------------------------------GSRRNIVSLNILINGYIDMELVDLARE 172
G+ ++ + + LI+ Y LV+ A+
Sbjct: 420 RPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKT 479
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
VF+ + KD+V+W SM+ G + +Q EEA++LF +++ G+ P+E V++++ S+L++
Sbjct: 480 VFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLAS 539
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
+ +G+ H +I++ + D V ALIDMY+KCG ++E + F T +DV+ W +MI
Sbjct: 540 MFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITT 599
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
A +G EAL+VF M ++PN TFV VL+AC H+G + EG F M Y ++P
Sbjct: 600 YAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNYDIEP 659
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
IEH+ +V+L R+G L+ A+EFI+ MP + +++LLSAC + ++G+ A
Sbjct: 660 GIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAEIGRYAAEMA 719
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ YVLLSN YA +G W +V R+ M T K+ G S I++
Sbjct: 720 LLADPTDSGPYVLLSNIYASKGLWADVHNLRQQMDSSGTVKETGCSWIEV 769
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 105/389 (26%), Positives = 187/389 (48%), Gaps = 37/389 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H K LD+++YVG +LI+ Y ++ +A ++F +P R +WNT+++ Y
Sbjct: 138 LGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYA 197
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
G L LF ++ EG+ D+ L SAC+ L L G+ +H YA + E +
Sbjct: 198 QIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTS 257
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N L+ +Y KC + A R++FD + +
Sbjct: 258 VINVLIDLYCKCSRLSAA--------------------------------RKLFDCMEYR 285
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++V W +M+ G ++ EA+ +F M G PD S+L++C SL+ + GR +H
Sbjct: 286 NLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIH 345
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ ++ D +VK ALIDMY+KC L EA F D +++ MIEG +
Sbjct: 346 AHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLA 405
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV-- 358
EA+ +F +M ++P+ TFVS+L I Q+ G + + +++ +
Sbjct: 406 EAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIH---GLIIKSGTSLDLYAAS 462
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
L+D+ S+ L+ A+ ++ +D I
Sbjct: 463 ALIDVYSKCSLVNDAKTVFNMLHYKDMVI 491
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/398 (29%), Positives = 188/398 (47%), Gaps = 43/398 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ +HA T D+++ N L+ Y + DAR LFD+MP R++ SW +++S+Y
Sbjct: 36 LNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYT 95
Query: 61 DFSDSGEVLILFKQLIFEGI---VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ LF + F+ V ++ L + AC + + + G+ VH A K+ L+
Sbjct: 96 QHGRDDCAISLF--VAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDA 153
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + AL+ +YAK MDEA+ +F + R V+ N +I GY +
Sbjct: 154 NVYVGTALINLYAKLGCMDEAMLVFHAL-PVRTPVTWNTVITGYAQI------------- 199
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
GC ALELF +M EGV PD V+ S +SACS+L L+ GR
Sbjct: 200 -------------GCGGV-----ALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGR 241
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H + ++ D V LID+Y KC L A F + +++V+WTTMI G
Sbjct: 242 QIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNS 301
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EA+ +F+ M + G +P+ S+L +C I +G Q+ V + + +
Sbjct: 302 FNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAH---VIKADLEADEY 358
Query: 358 V--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
V L+D+ ++ L +A + AED ISY A++
Sbjct: 359 VKNALIDMYAKCEHLTEARAVFDAL-AEDDAISYNAMI 395
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 7/244 (2%)
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV- 213
N+L+ GY ++ + AR +FD + +++V W S++ + + + A+ LF
Sbjct: 57 NLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCE 116
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
P+E ++ SVL AC+ + G VH ++ ++ + +V TALI++Y+K G ++EA++
Sbjct: 117 VPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAML 176
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F+ + VTW T+I G A G G AL +F +M +G++P+ S ++AC G
Sbjct: 177 VFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGF 236
Query: 334 ITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKA 391
+ G Q+ G YR + V L+DL + L A + M + +S+
Sbjct: 237 LEGGRQIH---GYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRN-LVSWTT 292
Query: 392 LLSA 395
++S
Sbjct: 293 MISG 296
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 145/330 (43%), Gaps = 69/330 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H + K+ D+Y ++LI Y + +L DA+ +F+ + ++D+ WN+++ +
Sbjct: 441 LSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHA 500
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E + LF QL+ G+ ++ T V L + + L + +G+ H + K G++ +
Sbjct: 501 QNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPH 560
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC + E R +F+ +
Sbjct: 561 VSNALIDMYAKCGFIKE--------------------------------GRMLFESTCGE 588
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D++ W SM+ + EEAL++F+ M + V P+ V VLSAC+ + G L H
Sbjct: 589 DVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEG-LNH 647
Query: 241 RFILQNNITQDAFVK--TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+++N + ++ ++++++ + G L A K+ +
Sbjct: 648 FNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAA---------KEFI-------------- 684
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAAC 328
ER IKP A + S+L+AC
Sbjct: 685 -----------ERMPIKPAAAVWRSLLSAC 703
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 165/531 (31%), Positives = 268/531 (50%), Gaps = 70/531 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LHAH + S+++VG++++ Y + AR +FD MP RD WNT++S ++
Sbjct: 131 VGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFS 190
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S + + +F ++ G+ D TL + +A A L++ G + C A+K GL +
Sbjct: 191 RNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVY 250
Query: 121 MENALLLMYAKC-------------------------------KEMDEALRLFDEM---G 146
+ L+ +Y+KC E + A+ LF E+ G
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310
Query: 147 SRRNIVSLNILINGYID-----------------------------------MELVDLAR 171
R N +L LI Y+ + V AR
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
++FDE +K + W +M+ G + + A+ LF++M+ + ++P+ + S+LSAC+ L
Sbjct: 371 QLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLG 429
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L G+ VH I + + +V TAL+DMY+KCGS+ EA F K+VVTW MI
Sbjct: 430 ALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMIT 489
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
G +G G EAL++FY+M + GI P TF+S+L AC HSGL++EG ++F M Y Q
Sbjct: 490 GYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQ 549
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
P EH+ C+VD+L RAG L A EFI+ MP E + ALL AC+ + ++ +
Sbjct: 550 PMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKR 609
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ +L ++ YVLLSN Y+ + ++ + A R+ +K+ + K PG ++I++
Sbjct: 610 LFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEI 660
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 1/183 (0%)
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
G ++ S+ L + + D+ V R++F+++ D+ L+ ++ G P+ ++ L+
Sbjct: 41 GIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLY 100
Query: 206 KKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
+ + PD +SA S L + + G L+H + + + + FV +A++D+Y K
Sbjct: 101 THLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFK 160
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
E A F +D V W TMI G + +++RVF M G+ + T +V
Sbjct: 161 FTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATV 220
Query: 325 LAA 327
L A
Sbjct: 221 LTA 223
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 165/531 (31%), Positives = 268/531 (50%), Gaps = 70/531 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LHAH + S+++VG++++ Y + AR +FD MP RD WNT++S ++
Sbjct: 131 VGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFS 190
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S + + +F ++ G+ D TL + +A A L++ G + C A+K GL +
Sbjct: 191 RNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVY 250
Query: 121 MENALLLMYAKC-------------------------------KEMDEALRLFDEM---G 146
+ L+ +Y+KC E + A+ LF E+ G
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310
Query: 147 SRRNIVSLNILINGYID-----------------------------------MELVDLAR 171
R N +L LI Y+ + V AR
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
++FDE +K + W +M+ G + + A+ LF++M+ + ++P+ + S+LSAC+ L
Sbjct: 371 QLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLG 429
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L G+ VH I + + +V TAL+DMY+KCGS+ EA F K+VVTW MI
Sbjct: 430 ALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMIT 489
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
G +G G EAL++FY+M + GI P TF+S+L AC HSGL++EG ++F M Y Q
Sbjct: 490 GYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQ 549
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
P EH+ C+VD+L RAG L A EFI+ MP E + ALL AC+ + ++ +
Sbjct: 550 PMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKR 609
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ +L ++ YVLLSN Y+ + ++ + A R+ +K+ + K PG ++I++
Sbjct: 610 LFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEI 660
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 1/183 (0%)
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
G ++ S+ L + + D+ V R++F+++ D+ L+ ++ G P+ ++ L+
Sbjct: 41 GIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLY 100
Query: 206 KKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
+ + + PD +SA S L + + G L+H + + + + FV +A++D+Y K
Sbjct: 101 THLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFK 160
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
E A F +D V W TMI G + +++RVF M G+ + T +V
Sbjct: 161 FTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATV 220
Query: 325 LAA 327
L A
Sbjct: 221 LTA 223
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 177/532 (33%), Positives = 261/532 (49%), Gaps = 74/532 (13%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IYN 60
K +H +V K S V NSLI Y + AR+LFD++ RDV SWN+++S N
Sbjct: 178 KRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMN 237
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
FS +G L F Q++ G+ D TLV + ACA + L G+ +H Y K G +
Sbjct: 238 GFSRNG--LEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVM 295
Query: 121 MENALLLMYAKCKEMD-------------------------------EALRLFDEMGSR- 148
N LL MY+KC ++ EA+ LFDEM S+
Sbjct: 296 FNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKG 355
Query: 149 -------------------------------------RNIVSLNILINGYIDMELVDLAR 171
N+ N L+N Y ++ A
Sbjct: 356 LRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEAN 415
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
+F ++ K+IV W +M+ G + P EAL+LF M + + PD+ M VL AC+ L+
Sbjct: 416 LIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLA 474
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L+ GR +H IL+ D V AL+DMY KCG L A F KD++ WT MI
Sbjct: 475 ALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIA 534
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
G +G G EA+ F +M GI+P E++F S+L AC HSGL+ EG +LF M ++
Sbjct: 535 GYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIE 594
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
P +EH+ C+VDLL R+G L +A +FI+ MP + + ALLS C + + +L +KVA +
Sbjct: 595 PKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEH 654
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ +L ++ YVLL+N YA W EV + +R + + + G S I+++
Sbjct: 655 IFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQ 706
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 183/408 (44%), Gaps = 47/408 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+ ++ + D +G L+ Y R +FD + + WN LMS Y
Sbjct: 76 GKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAK 135
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + LF+++ GI D T + A K+ K VH Y K+G +
Sbjct: 136 IGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAV 195
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ Y KC E V+ AR +FDE+ D+D
Sbjct: 196 VNSLIAAYFKCGE--------------------------------VESARILFDELSDRD 223
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W SM+ GC LE F +M++ GV D +V+VL AC+++ NL GR +H
Sbjct: 224 VVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHA 283
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ ++ + L+DMYSKCG+L A F K +V+WT++I GL E
Sbjct: 284 YGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYE 343
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR-----MGGVYRVQPTIEH 356
A+ +F +M+ KG++P+ SV+ AC S + +G ++ MG V
Sbjct: 344 AIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNA--- 400
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDL 404
L+++ ++ G + +A +P ++ +S+ ++ YS+ L
Sbjct: 401 ---LMNMYAKCGSMEEANLIFSQLPVKN-IVSWNTMIGG---YSQNSL 441
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 136/315 (43%), Gaps = 44/315 (13%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T + CA L+ L GK VH + G+ + L+ MY C +
Sbjct: 59 TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGD----------- 107
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
L+ G R +FD I++ I LW +M K E++ LF
Sbjct: 108 -----------LVKG----------RRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLF 146
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+KM + G+ D VL ++ + ++ + VH ++L+ V +LI Y KC
Sbjct: 147 EKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKC 206
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G +E A + F + +DVV+W +MI G G L F QM G+ + AT V+VL
Sbjct: 207 GEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVL 266
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEE-FIKIM 380
AC + G +T G R Y V+ V L+D+ S+ G L A E F+K+
Sbjct: 267 VACANVGNLTLG-----RALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKM- 320
Query: 381 PAEDKFISYKALLSA 395
E +S+ ++++A
Sbjct: 321 -GETTIVSWTSIIAA 334
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 131/293 (44%), Gaps = 35/293 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H H+ K + S++ V N+L++ Y + +A ++F ++P +++ SWNT++ Y+
Sbjct: 379 GREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQ 438
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E L LF + + + D +T+ + ACA L L G+ +H + + G L++
Sbjct: 439 NSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHV 497
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MY KC + A +LF D I KD
Sbjct: 498 ACALVDMYVKCGLLVLAQQLF--------------------------------DMIPKKD 525
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVH 240
++LW M+ G +EA+ F+KM G+ P+E S+L AC+ L+ G +L
Sbjct: 526 MILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFD 585
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEG 292
+ NI ++D+ + G+L A K D W ++ G
Sbjct: 586 SMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSG 638
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 218/357 (61%)
Query: 106 VHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME 165
+H + G + +L+ Y C + A R+FDE + ++VS N++I+GY+
Sbjct: 93 LHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKSG 152
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS 225
+ ARE+FD + +++V W ++ + KQPEEA+E+F++M EG+ PD ++SVLS
Sbjct: 153 DLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLS 212
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
AC L + G VHRF+L+ + Q+ + A+IDMY KCGS+++AL F + K +VT
Sbjct: 213 ACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVT 272
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
WTTMI G A +GLG+EA+ +F +ME++ + PN+ TF++VL+ C H GL G F+ M
Sbjct: 273 WTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMV 332
Query: 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
Y+++P +EH+ C++DLL RAG L +A I+ MP + + ALL+A T+ + +LG
Sbjct: 333 SQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELG 392
Query: 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ ++++L + Y+LLSN YA + W V E R +M++ R PG S ID+
Sbjct: 393 EQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSIDV 449
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 133/305 (43%), Gaps = 37/305 (12%)
Query: 11 KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLI 70
+TA +D+ N +I Y + AR LFD MP R+V SW ++ Y E +
Sbjct: 131 ETAAYADVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIE 190
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
+F+++ EGI D + L+ + SAC L + G+ VH + + GL + + NA++ MY
Sbjct: 191 VFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYV 250
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
KC + +AL +F+ M K IV W +M+
Sbjct: 251 KCGSVKKALEVFEGME--------------------------------QKSIVTWTTMIA 278
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR-FILQNNIT 249
G EA+ELF++M E V+P++ ++VLS CS + GR + + Q I
Sbjct: 279 GFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIK 338
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYG---LGNEALRV 305
+ID+ + G L EA K + W ++ +G LG +AL
Sbjct: 339 PRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALLH 398
Query: 306 FYQME 310
++E
Sbjct: 399 LIELE 403
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 9/155 (5%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H V + L +I + N++I Y + A +F+ M + + +W T+++ +
Sbjct: 222 LGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFA 281
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR-----LEKLHYGKTVHCYATKVGL 115
E + LF+++ E + + IT + + S C+ L + ++ V Y K +
Sbjct: 282 LHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRV 341
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
E+ M + LL A C + EA L +M + N
Sbjct: 342 EHYGCMID--LLGRAGC--LMEARGLIQDMPFKAN 372
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 163/470 (34%), Positives = 249/470 (52%), Gaps = 43/470 (9%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-ND 61
K +HA + T + ++ + +I F A +FDK+P D WNT++ + N
Sbjct: 29 KQIHARIFLTGFNHNLILSGKIIMFCAVSQNMNYALNVFDKIPKPDSFLWNTMIRGFGNS 88
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ S + FK++ D T + ARL ++ GK +HC K G E +
Sbjct: 89 TTHSHNAIHFFKRMQL-AHRPDNFTFSFILKIIARLRFVNLGKQLHCSLFKFGFENHTYV 147
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ MY K+++ A +LF+EM +
Sbjct: 148 RNSLIHMYGMLKDIEIAHQLFEEM--------------------------------YQPN 175
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-----VTPDEEVMVSVLSACSSLSNLQYG 236
+V W S++ V + EA++LF KM+ + + PD +V LSAC ++ +L +G
Sbjct: 176 LVSWNSIIDCHVYCGKYNEAIDLFTKMVQQQHNGMELQPDHATLVVTLSACGAIGSLDFG 235
Query: 237 RLVHRFILQ--NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
R VH F+ N+ + V AL+DMY+KCG++EEA TF K+VV+W MI G A
Sbjct: 236 RKVHSFVRDGVNSFGESISVFNALVDMYAKCGAVEEAYETFSNMKRKNVVSWNVMILGFA 295
Query: 295 NYGLGNEALRVFYQMERKGI-KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
++G G EAL +F +M + + +P+E TF+ VL AC H GL+ EG + F M Y ++PT
Sbjct: 296 SHGNGEEALALFTRMLHENVERPDEITFLCVLCACSHGGLVDEGRRYFEIMNRDYNIKPT 355
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
I+H+ C+VDLL RAGL +A E IK MP E I ++ LL+AC Y +LG+KV ++M
Sbjct: 356 IKHYGCMVDLLGRAGLFVEAYELIKSMPVECNAIIWRTLLAACRNYGNVELGEKVRKHLM 415
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRK-KPGNSIIDL 462
+L YVLL+N YA G W E+++ RR+M+E + RK +PGNS I +
Sbjct: 416 ELEPDHSSDYVLLANMYASTGQWNEMSKERRSMQERRVRKPEPGNSFIGI 465
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 143/309 (46%), Gaps = 46/309 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH + K ++ YV NSLIH YG + A LF++M ++ SWN+++ +
Sbjct: 128 LGKQLHCSLFKFGFENHTYVRNSLIHMYGMLKDIEIAHQLFEEMYQPNLVSWNSIIDCHV 187
Query: 61 DFSDSGEVLILFKQLIFEG-----IVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
E + LF +++ + + D TLV+ SAC + L +G+ VH + + G+
Sbjct: 188 YCGKYNEAIDLFTKMVQQQHNGMELQPDHATLVVTLSACGAIGSLDFGRKVHSF-VRDGV 246
Query: 116 EYM---LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLARE 172
+++ NAL+ MYAKC ++EA F M R+N+VS N++I G+
Sbjct: 247 NSFGESISVFNALVDMYAKCGAVEEAYETFSNM-KRKNVVSWNVMILGFAS--------- 296
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLS 231
HG EEAL LF +M+ E V PDE + VL ACS
Sbjct: 297 -----------------HG-----NGEEALALFTRMLHENVERPDEITFLCVLCACSHGG 334
Query: 232 NLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTT 288
+ GR + ++ NI ++D+ + G EA L+ +C ++ W T
Sbjct: 335 LVDEGRRYFEIMNRDYNIKPTIKHYGCMVDLLGRAGLFVEAYELIKSMPVECNAII-WRT 393
Query: 289 MIEGLANYG 297
++ NYG
Sbjct: 394 LLAACRNYG 402
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 159/465 (34%), Positives = 239/465 (51%), Gaps = 35/465 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIY 59
K L A KT L SD+ V I+F T A LFD++P D+ +NT+ Y
Sbjct: 37 KQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGY 96
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
LF Q++F G+ D T L ACA + L G+ +HC A K+GL +
Sbjct: 97 ARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENV 156
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ L+ MY C EM D AR VFD+I +
Sbjct: 157 YVCPTLINMYTACNEM--------------------------------DCARRVFDKIWE 184
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+V + +M+ G + +P EAL LF+++ + P + M+SVLS+C+ L L G+ +
Sbjct: 185 PCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWM 244
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ +N + V TALIDMY+KCGSL++A+ F +D W+ MI A +G G
Sbjct: 245 HEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHG 304
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+A+ +F +M + G +P+E TF+ +L AC H+GL+ EG + F M Y V P I+H+ C
Sbjct: 305 LKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGC 364
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL RAG L +A EFI +P I ++ LLSAC ++ +LGK+V + +L +
Sbjct: 365 MVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSH 424
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
Y++LSN A G W +V R+ M E K PG S +++ +
Sbjct: 425 GGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNN 469
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 137/315 (43%), Gaps = 39/315 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH K L ++YV +LI+ Y AR +FDK+ V ++N +++ Y
Sbjct: 140 GRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYAR 199
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E L LF++L + +T++ + S+CA L L GK +H Y K G + +
Sbjct: 200 GSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKV 259
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ AL+ MYAKC +D+A+ +F+ M R D
Sbjct: 260 DTALIDMYAKCGSLDDAVCVFENMAVR--------------------------------D 287
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
W +M+ +A+ LFK+M G PDE + +L ACS ++ G +
Sbjct: 288 TQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEG-FEYF 346
Query: 242 FILQNNITQDAFVK--TALIDMYSKCGSLEEALVTFYKTDCKDV-VTWTTMIEGLANYG- 297
+ +++ +K ++D+ + G LEEA + + W T++ ++G
Sbjct: 347 YGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGN 406
Query: 298 --LGNEALRVFYQME 310
LG + ++++
Sbjct: 407 VELGKRVIEQIFELD 421
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 106/266 (39%), Gaps = 43/266 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H +V K + + V +LI Y + DA +F+ M RD +W+ ++ Y
Sbjct: 240 LGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYA 299
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + LFK++ G D+IT + L AC+ H + G EY
Sbjct: 300 IHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACS-----------HTGLVEEGFEYFYG 348
Query: 121 MEN------------ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168
M + ++ + + ++EA + R + L++ V+
Sbjct: 349 MRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVE 408
Query: 169 LAREVFDEIVD------KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS 222
L + V ++I + D ++ ++ C +A + E+ + K M + GV
Sbjct: 409 LGKRVIEQIFELDDSHGGDYIILSNL---CARAGRWEDVNYVRKLMNERGVVK------- 458
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNI 248
+ CSS ++ +VH F + +
Sbjct: 459 -IPGCSS---VEVNNVVHEFFSGDGV 480
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 163/471 (34%), Positives = 264/471 (56%), Gaps = 13/471 (2%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLI-----HFYGRMALFTDARVLFDKMPFRDVGSWNTLMS 57
K HA V T L+++ + + ++ H + +L RV F+++ V +NTL+
Sbjct: 22 KQAHAQVFTTGLENNTFALSRVLAFCSSHKHHHESLTYACRV-FEQIQNPTVCIYNTLIK 80
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ + L +F +++ + D T+ + AC +GK +H Y++K+GL +
Sbjct: 81 AFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHDCSFGKMIHGYSSKLGLVF 140
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + N+L+ MY ++ A +FDE+ S N+VS +++I+GY + VD AR FDE
Sbjct: 141 DIYVGNSLMAMYCVFGDVVAARYVFDEIPSL-NVVSWSVMISGYAKVGDVDSARLFFDEA 199
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+KD +W +M+ G V+ +E+L LF+ M + PDE + VS+LSAC+ L L+ G
Sbjct: 200 PEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGV 259
Query: 238 LVHRFILQNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+H+ + Q + + T+L+DMY+KCG+LE A F + +DVV W MI G+A +
Sbjct: 260 WIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMH 319
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G G AL++FY ME+ G+KP++ TF++V AC +SG+ EG L +M VY + P EH
Sbjct: 320 GDGKGALKLFYDMEKVGVKPDDITFIAVFTACSYSGMAYEGLMLLDKMCSVYNIVPKSEH 379
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMP----AEDKFISYKALLSACITYSEFDLGKKVANNM 412
+ CLVDLLSRAGL +A I+ + ++ ++++A LSAC + E L + A +
Sbjct: 380 YGCLVDLLSRAGLFEEAMVMIRKITNSWNGSEETLAWRAFLSACCNHGETQLAELAAEKV 439
Query: 413 MKLGNQSHEA-YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++L N H YVLLSN YA G ++ R MK T K PG S +++
Sbjct: 440 LQLDNHIHSGVYVLLSNLYAASGKHSDARRVRDMMKIKGTNKAPGCSSVEI 490
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 138/335 (41%), Gaps = 72/335 (21%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSL-------------------------------IHFYGR 30
GK +H + +K L DIYVGNSL I Y +
Sbjct: 126 GKMIHGYSSKLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAK 185
Query: 31 MALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+ AR+ FD+ P +D G W ++S Y S E L LF+ + IV D+ V +
Sbjct: 186 VGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSI 245
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYM-LNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
SACA L L G +H + ++ L + + + +LL MYAKC ++ A RLFD M R
Sbjct: 246 LSACAHLGALEIGVWIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMR- 304
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D+V W +M+ G + AL+LF M
Sbjct: 305 -------------------------------DVVCWNAMISGMAMHGDGKGALKLFYDME 333
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG--RLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
GV PD+ ++V +AC S S + Y L+ + NI + L+D+ S+ G
Sbjct: 334 KVGVKPDDITFIAVFTAC-SYSGMAYEGLMLLDKMCSVYNIVPKSEHYGCLVDLLSRAGL 392
Query: 268 LEEALVTFYK-----TDCKDVVTWTTMIEGLANYG 297
EEA+V K ++ + W + N+G
Sbjct: 393 FEEAMVMIRKITNSWNGSEETLAWRAFLSACCNHG 427
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 155/455 (34%), Positives = 249/455 (54%), Gaps = 19/455 (4%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ DI N +I YG AR FD+MP R+V SW +++ Y D E +LF
Sbjct: 164 EKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDS 223
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM----LNMENALLLMYA 130
+ V D + ++ S Y C ++ M N ++ +
Sbjct: 224 MP----VKDLASWNVMVSG--------YMDIGDCVNARIIFGKMPIHDTGSWNIMISGFC 271
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
K E++ A FD M +N++S I+++GYI + AR +FD++ K++V W +M+
Sbjct: 272 KAGELESAKDFFDRM-PNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIG 330
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNIT 249
G + QP +ALELF++ ++ + PDE ++ ++SACS L + ++H ++ ++
Sbjct: 331 GYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYV-GPSLL 389
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
D V T+LIDMY+KCGS+E+AL F KD++ ++TMI LAN+GLG +A+ +F +M
Sbjct: 390 SDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKM 449
Query: 310 ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL 369
+R IKP+ TF+ VL AC H GL+ EG + F++M + +QP+ +H+ C+VDLL R G
Sbjct: 450 QRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGC 509
Query: 370 LYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429
L +A I+ MP + + ALL+AC + L + A + K+ + Y+LLSN
Sbjct: 510 LEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNI 569
Query: 430 YALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YA G W VA+ R ++E + RK G+S I+L H
Sbjct: 570 YAAAGRWGSVAKVRAKIREHRVRKNRGSSWIELSH 604
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 127/493 (25%), Positives = 228/493 (46%), Gaps = 41/493 (8%)
Query: 3 KGLHAHV-TKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +HA + ++++ S +V N L+ Y R A +FD++ + W +L+ Y +
Sbjct: 19 KSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVE 78
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E LF Q+ E I T+ + A ARL + G+ V+ + K G + L +
Sbjct: 79 NRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIV 138
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+N++L ++ +C+++D A + FDEM ++IVS N++I+GY + + VD+AR+ FD + +++
Sbjct: 139 QNSVLDLFMRCRKVDTARQAFDEM-CEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERN 197
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ--YGRLV 239
+V W SM+ G VKA EA LF M + + VMVS N + +G++
Sbjct: 198 VVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLA-SWNVMVSGYMDIGDCVNARIIFGKMP 256
Query: 240 HRFILQNNITQDAFVKTA----------------------LIDMYSKCGSLEEALVTFYK 277
NI F K ++D Y K G A F +
Sbjct: 257 IHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQ 316
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
K++VTW+TMI G A G +AL +F + + + IKP+E + +++AC G+I
Sbjct: 317 MPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAA 376
Query: 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
+ G + + F L+D+ ++ G + +A + ++ +D + Y +++A
Sbjct: 377 ESIIHNYVGP-SLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKD-LLCYSTMIAALA 434
Query: 398 TYSEFDLGKKVA--NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL------ 449
+ LG+ + M+ N ++ L A H V E R+ K++
Sbjct: 435 NHG---LGRDAIFLFDKMQRANIKPDSVTFLGVLTACN-HGGLVDEGRKYFKQMTEEFGI 490
Query: 450 QTRKKPGNSIIDL 462
Q +K ++DL
Sbjct: 491 QPSEKHYACVVDL 503
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 172/501 (34%), Positives = 257/501 (51%), Gaps = 45/501 (8%)
Query: 3 KGLHAHVTKTALDSDIY----VGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
K LH +K +D D++ +G L+ Y R +FD++P ++V +N ++
Sbjct: 55 KKLH---SKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRS 111
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y + + L++FK + GI D T + A + E L G +H +VGL+
Sbjct: 112 YVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLN 171
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI-----NGYID--------ME 165
+ + N L+ MY KC + EA R+ D+M R ++VS N L+ NG D ME
Sbjct: 172 VFVGNGLISMYGKCGCLVEACRVLDQMPCR-DVVSWNSLVAGCARNGQFDDALEVCKEME 230
Query: 166 L------------------------VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
L V +E+F ++ +K +V W M+ + P EA
Sbjct: 231 LLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEA 290
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
+++F +M D V PD + SVL AC LS L GR +H ++++ + + ++ ALIDM
Sbjct: 291 VDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDM 350
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y+KCG LE A F + +DVV+WT+MI G G +A+ +F +M+ G+ P+ F
Sbjct: 351 YAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAF 410
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
VSVL+AC H+GL+ EG F+ M ++ P IEHFVC+VDLL RAG + +A FIK MP
Sbjct: 411 VSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMP 470
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
E + ALLSAC YS +G A+ + +L + YVLLSN YA G W +V
Sbjct: 471 MEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTT 530
Query: 442 ARRNMKELQTRKKPGNSIIDL 462
R MK +K PG S +L
Sbjct: 531 VRSIMKTKGIKKMPGVSNFEL 551
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 160/366 (43%), Gaps = 71/366 (19%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +HA V + LD +++VGN LI YG+ +A + D+MP RDV SWN+L++
Sbjct: 155 VGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCA 214
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR--LEKLHY---------GKTVHCY 109
+ L + K++ G+ D T+ L A L+ + + K++ +
Sbjct: 215 RNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSW 274
Query: 110 ATKV-----------GLEYMLNMEN--------ALLLMYAKCKEMDEAL---RLFDEMGS 147
+ ++ L ME+ ++ + C ++ L R+ + +
Sbjct: 275 NVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVR 334
Query: 148 RR---NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
+R N++ N LI+ Y ++ AREVFD++ +D+V W SM+ + +A+ L
Sbjct: 335 KRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSL 394
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYS 263
F +M D G+ PD VSVLSACS L GR + + + I ++D+
Sbjct: 395 FSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLG 454
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
+ G ++EA YG +++ ++PNE + +
Sbjct: 455 RAGQVDEA------------------------YGF----------IKQMPMEPNERVWGA 480
Query: 324 VLAACR 329
+L+ACR
Sbjct: 481 LLSACR 486
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 160/458 (34%), Positives = 249/458 (54%), Gaps = 42/458 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA + K + D++V NSLIH Y DAR +F+ D+ +WN+++ Y
Sbjct: 29 GEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVK 88
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ G LF+++ LFS
Sbjct: 89 NGEIGAARELFEEMPERD----------LFSW---------------------------- 110
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+++ Y +M A LF++M R+IVS N +I+GY ++ +++A E+F+ + ++
Sbjct: 111 -NSMIAGYVGNGDMTAAEDLFNKM-PFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRN 168
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W M+ V+ K +E L +F KM+ E P+E +VSVL+AC+ L L G+ +H
Sbjct: 169 VVSWNIMLALYVRIKDYDECLRMFDKMMGE-TMPNEATLVSVLTACAHLGRLDRGKWIHS 227
Query: 242 FILQNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I N + + D + TAL+ MY+KCG+++ A F K + VV+W +MI G +G +
Sbjct: 228 YIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQAD 287
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL +F ME++G PN+ATF+ VL+AC HSG+I EG F M Y+++P +EH+ C+
Sbjct: 288 KALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCM 347
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGL+ EE I+ MP E + ALLSAC T+S +L + VA +++L +
Sbjct: 348 VDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDI 407
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNS 458
Y+LLSN YA EG W +V R+ MKE K G S
Sbjct: 408 GPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGLS 445
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 97/206 (47%), Gaps = 10/206 (4%)
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M+ + V P+ ++ C + ++ G +H IL+ D FV+ +LI MYS CG
Sbjct: 1 MVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGR 60
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+ +A F D+VTW +MI+G G A +F +M + + ++ S++A
Sbjct: 61 IGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDL----FSWNSMIAG 116
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
+G +T LF +M +R I + C++D ++ + A E MP + +
Sbjct: 117 YVGNGDMTAAEDLFNKM--PFR---DIVSWNCMIDGYAQVQNMEIACELFNWMPYRN-VV 170
Query: 388 SYKALLSACITYSEFDLGKKVANNMM 413
S+ +L+ + ++D ++ + MM
Sbjct: 171 SWNIMLALYVRIKDYDECLRMFDKMM 196
>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Brachypodium distachyon]
Length = 610
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 3/459 (0%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HA + K L L+ Y + L D R+LFD+ P RD+ +++L++ +
Sbjct: 26 HARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHSESP 85
Query: 66 GEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
VL L ++++ + + D L + SA ARL L GK +H + ++++
Sbjct: 86 ELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSS 145
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MY KC D+A ++FD + ++ N V LI+GY+ D A E+F + + +
Sbjct: 146 LIDMYCKCGVPDDARKVFDSIVAK-NSVMWTALISGYVLNGRSDEALELFRSMPGRTLFA 204
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE-VMVSVLSACSSLSNLQYGRLVHRFI 243
W +++ G V++ + A++LF M +GV+ D+ V+ S + + L+ GR +H
Sbjct: 205 WTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLT 264
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++ + V A++DMYSKC + A F + +D+++WTTM+ G A +G EA
Sbjct: 265 MRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAF 324
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
++ +M G+KPNE TFV ++ AC H+GL+ +G QLF M G Y + P ++H+ C +DL
Sbjct: 325 SLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDL 384
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
LSR+G L +AEE I MP ++ +LLSAC Y+ ++ +VA+N+++L + Y
Sbjct: 385 LSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRPKYPSTY 444
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
VLLSN YA+ G W V R+ M +++ RK+PG S I++
Sbjct: 445 VLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEV 483
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 134/340 (39%), Gaps = 68/340 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD------------------ 42
+GK LH H + SD V +SLI Y + + DAR +FD
Sbjct: 123 LGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYV 182
Query: 43 -------------KMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGI-VADKITLV 88
MP R + +W L+S + +S + LF + +G+ + D L
Sbjct: 183 LNGRSDEALELFRSMPGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLS 242
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
A L G+ +H ++G + + NA++ MY+KC ++ A +F
Sbjct: 243 SAIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVF------ 296
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+EI +DI+ W +M+ G + + EEA L+ +M
Sbjct: 297 --------------------------EEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRM 330
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGS 267
+ GV P+E V ++ ACS +Q GR L + I T +D+ S+ G
Sbjct: 331 VLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLLSRSGH 390
Query: 268 LEEA--LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
L EA L+T D TW +++ Y ++RV
Sbjct: 391 LAEAEELITTMPY-VPDEATWASLLSACKKYNNAEMSIRV 429
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 33/207 (15%)
Query: 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
+ H K GL L+ YAK + + + LFDE R
Sbjct: 23 RRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRR--------------- 67
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVS 222
D+ L+ S++ ++ PE L L ++M+ + + PD V+ S
Sbjct: 68 -----------------DLHLYSSLLAAVSHSESPELVLPLLRRMLSADALRPDHFVLAS 110
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
+ SA + L +L G+ +H + + + D VK++LIDMY KCG ++A F K+
Sbjct: 111 IASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKN 170
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQM 309
V WT +I G G +EAL +F M
Sbjct: 171 SVMWTALISGYVLNGRSDEALELFRSM 197
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 144/339 (42%), Positives = 207/339 (61%), Gaps = 1/339 (0%)
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N +L Y E+ EA ++FD M R++VS N +I+GY V LARE+FD D+D
Sbjct: 27 NVMLAAYVSRSEVAEARKVFDGM-PMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDA 85
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W SM+ K+++ +EALEL+++M + PD +VSV+SACS L L G VHRF
Sbjct: 86 FSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRF 145
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+ N I D + TALIDMY+KCG +E A F + KDV TW++MI GLAN+GLG+E+
Sbjct: 146 VESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHES 205
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F +M +G+KPN TFV VL AC H GL++EG + FR M V+ ++PT+EH+ C+VD
Sbjct: 206 LSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVD 265
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL R+G + +A + I+ M E I ++ALL AC + ++ ++ + L
Sbjct: 266 LLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGH 325
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YVLLSN YA W VAE R+ ++ ++ PG S I+
Sbjct: 326 YVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIE 364
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 123/276 (44%), Gaps = 34/276 (12%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ N++IH Y AR +FD RD SW++++S Y S E L L++++
Sbjct: 53 DLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMH 112
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
I+ D ITLV + SAC+ L L G VH + +E L + AL+ MYAKC +++
Sbjct: 113 AASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIE 172
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A R+FD M +KD+ W SM+ G
Sbjct: 173 SAQRVFDRMP--------------------------------EKDVQTWSSMIIGLANHG 200
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NNITQDAFVK 255
E+L LF KMI EG+ P+ V VL AC+ + + G+ R + + + I
Sbjct: 201 LGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHY 260
Query: 256 TALIDMYSKCGSLEEALVTFYK-TDCKDVVTWTTMI 290
++D+ + G +EEA T D + W ++
Sbjct: 261 GCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALL 296
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 88/209 (42%), Gaps = 32/209 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H V ++ D+ +G +LI Y + A+ +FD+MP +DV +W++++
Sbjct: 138 VGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLA 197
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
+ E L LF ++I EG+ + +T V + AC + + GK +V G+E +
Sbjct: 198 NHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTV 257
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ + + ++EA +L M +
Sbjct: 258 EHYGCMVDLLGRSGHVEEARQLIRSM-------------------------------TFE 286
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKM 208
D ++WR+++ C K E A E K+
Sbjct: 287 PDTIIWRALLGACRIHKNVEIAEEAMAKL 315
>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 768
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/466 (33%), Positives = 242/466 (51%), Gaps = 39/466 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K LD + Y G SL Y R A +F ++ D+ SWN+L+ N
Sbjct: 268 GEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSWNSLI---NA 324
Query: 62 FSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
FS G E ++LF ++ + + D IT++ L AC + L G+++H Y K+GL
Sbjct: 325 FSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVKLGLGGD 384
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + N+L+ MY +C + A+ +VF E
Sbjct: 385 VMVCNSLISMYTRCLDFPSAM--------------------------------DVFHETN 412
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D+D+V W S++ CV+ + E+ +LF+ + + D + +VLSA + L + +
Sbjct: 413 DRDVVTWNSILTACVQHRHMEDVFKLFRLLHSSMPSLDRISLNNVLSASAELGYFEMAKQ 472
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF-YKTDCKDVVTWTTMIEGLANYG 297
VH + + + DA + ALID Y+KCGSL++A F +DV +W+++I G A +G
Sbjct: 473 VHAYAFKVGLVSDAILSNALIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFG 532
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F +M G+KPN TFV VL AC GL+ EGC + M Y + PT EH
Sbjct: 533 YAKEALDLFARMRNLGVKPNHVTFVGVLIACSRVGLVDEGCYYYSIMEPEYGIVPTKEHC 592
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C++DLL+RAG L +A +F+ MP E I + LL+A T+++ ++GK+ A ++ +
Sbjct: 593 SCVIDLLARAGRLSEAAKFVDQMPFEPDIIMWNTLLAASRTHNDVEMGKRAAEGVLNIDP 652
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AYVLL N YA G+W E A +++M+ +K PG S I LK
Sbjct: 653 SHSAAYVLLCNIYASSGNWNEFARLKKDMRSSGVQKSPGKSWIKLK 698
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 104/411 (25%), Positives = 191/411 (46%), Gaps = 53/411 (12%)
Query: 2 GKGLHAHVTKTA-----LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM 56
G+ +H H+ ++ L + + N LI YGR A AR++FD M R+ SW ++
Sbjct: 59 GRLVHRHLLASSAGAAYLARNTILSNHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVI 118
Query: 57 SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
+ + S + + LF ++ G D+ L ACA L L G+ VH A K
Sbjct: 119 AAHAQNSRCADAMGLFSSMLRLGTAPDEFALGSAVRACAELGDLGLGRQVHAQAIKSDNG 178
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
L ++NAL+ MY+K + + L F+
Sbjct: 179 GHLIVQNALVTMYSKSGSVGDGFAL--------------------------------FER 206
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSN-LQ 234
I DKD+ W S++ G + + +AL +F++MI EG+ P+E SV ACS + N L+
Sbjct: 207 IRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLE 266
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
YG +H ++ + ++++ +L DMY++C L+ A+ FY+ + D+V+W ++I +
Sbjct: 267 YGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSWNSLINAFS 326
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM------GGVY 348
GL +EA+ +F +M +KP+ T +++L AC + +G + + G V
Sbjct: 327 ADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVKLGLGGDVM 386
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
I + +D S + ++ + +++ ++L+AC+ +
Sbjct: 387 VCNSLISMYTRCLDFPSAMDVFHETN--------DRDVVTWNSILTACVQH 429
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 158/363 (43%), Gaps = 72/363 (19%)
Query: 94 CARLEKLHYGKTVHCY--ATKVGLEYMLN---MENALLLMYAKCKEMDEALRLFDEMGSR 148
C+RL G+ VH + A+ G Y+ + N L+ MY +C D A
Sbjct: 50 CSRLRSFPQGRLVHRHLLASSAGAAYLARNTILSNHLITMYGRCAAPDSA---------- 99
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
R VFD ++D++ V W +++ + + +A+ LF M
Sbjct: 100 ----------------------RMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSM 137
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+ G PDE + S + AC+ L +L GR VH ++++ V+ AL+ MYSK GS+
Sbjct: 138 LRLGTAPDEFALGSAVRACAELGDLGLGRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSV 197
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNEATFVSVLAA 327
+ F + KD+ +W ++I GLA G +AL +F +M +G+ PNE F SV A
Sbjct: 198 GDGFALFERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRA 257
Query: 328 C-----------RHSGLITE---------GCQL---FRR-------MGGVYRVQ-PTIEH 356
C + GL + GC L + R M YR++ P +
Sbjct: 258 CSVVINSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVS 317
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIM---PAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
+ L++ S GLL +A M + I+ ALL AC+ G+ + + ++
Sbjct: 318 WNSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLV 377
Query: 414 KLG 416
KLG
Sbjct: 378 KLG 380
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 96/419 (22%), Positives = 189/419 (45%), Gaps = 38/419 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +HA K+ + V N+L+ Y + D LF+++ +D+ SW ++++
Sbjct: 164 LGRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFALFERIRDKDLFSWGSIIAGLA 223
Query: 61 DFSDSGEVLILFKQLIFEGI-VADKITLVILFSACA-RLEKLHYGKTVHCYATKVGLEYM 118
+ L +F+++I EG+ ++ +F AC+ + L YG+ +H K L+
Sbjct: 224 QQGREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCVKYKLDRN 283
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+L MYA+C ++D A+++F + S ++VS N LIN +
Sbjct: 284 SYAGCSLGDMYARCNKLDSAMKVFYRIES-PDLVSWNSLINAF----------------- 325
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D +L EA+ LF +M + PD ++++L AC L+ GR
Sbjct: 326 SADGLL--------------SEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRS 371
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++++ + D V +LI MY++C A+ F++T+ +DVVTW +++ +
Sbjct: 372 IHSYLVKLGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRH 431
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
+ ++F + + + +VL+A G Q+ V V I
Sbjct: 432 MEDVFKLFRLLHSSMPSLDRISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNA 491
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
L+D ++ G L A + +IM S+ +L+ + Y++F K+ + ++ N
Sbjct: 492 -LIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLI---VGYAQFGYAKEALDLFARMRN 546
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 163/465 (35%), Positives = 259/465 (55%), Gaps = 8/465 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIY 59
K +HA++ KT L SD + ++ F A +D A ++F ++ ++ WNT++ +
Sbjct: 42 KQIHANLIKTGLISDTVAASRVLAFC--CASPSDRNYAYLVFTRINHKNPFVWNTIIRGF 99
Query: 60 NDFSDSGEVLILFKQLIFEG--IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ S + +F ++ + ++T +F A A L G+ +H K GLE
Sbjct: 100 SRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGRVIKEGLED 159
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ N +L MY C + EA RLF M ++V+ N +I G L+D A+++FDE+
Sbjct: 160 DSFIRNTMLHMYVTCGCLVEAWRLFVGMMGF-DVVAWNSIIMGLAKCGLIDQAQKLFDEM 218
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
++ V W SM+ G V+ + ++ALE+F++M + V PD MVS+L+AC+ L + GR
Sbjct: 219 PQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGR 278
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H++I++N ++ V TALIDMY KCG EE L F K + W +MI GLAN G
Sbjct: 279 WIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLANNG 338
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
A+ +F ++ER G++P+ +F+ VL AC HSG + + + FR M Y ++P+I+H+
Sbjct: 339 CEERAMDLFLELERTGLEPDSVSFIGVLTACAHSGEVHKAGEFFRLMREKYMIEPSIKHY 398
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+V++L AGLL +AE IK MP E I + +LL+AC ++ K+ AN + L
Sbjct: 399 TCMVNVLGGAGLLDEAEALIKKMPVEGDTIIWSSLLAACRKNGNVEMAKRAANCLKNLDP 458
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVL+SN YA G + E E R MKE Q K+ G S I++
Sbjct: 459 DETCGYVLMSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEV 503
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/329 (21%), Positives = 130/329 (39%), Gaps = 65/329 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY-------------------------------GR 30
G+ LH V K L+ D ++ N+++H Y +
Sbjct: 145 GRQLHGRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAK 204
Query: 31 MALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
L A+ LFD+MP R+ SWN+++S + + L +F+++ + D T+V L
Sbjct: 205 CGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSL 264
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
+ACA L G+ +H Y + E + AL+ MY KC +E L+
Sbjct: 265 LNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLK---------- 314
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
VF+ K + W SM+ G E A++LF ++
Sbjct: 315 ----------------------VFECAPTKQLSCWNSMILGLANNGCEERAMDLFLELER 352
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK-TALIDMYSKCGSLE 269
G+ PD + VL+AC+ + R + + + + + T ++++ G L+
Sbjct: 353 TGLEPDSVSFIGVLTACAHSGEVHKAGEFFRLMREKYMIEPSIKHYTCMVNVLGGAGLLD 412
Query: 270 EALVTFYKTDCK-DVVTWTTMIEGLANYG 297
EA K + D + W++++ G
Sbjct: 413 EAEALIKKMPVEGDTIIWSSLLAACRKNG 441
>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
Length = 581
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 163/465 (35%), Positives = 245/465 (52%), Gaps = 35/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR--DVGSWNTLMSI 58
+G LH+ K L SD +V NSLI+ Y + AR + D P D SWNT++S
Sbjct: 111 VGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATARQVLDSAPQGACDTVSWNTIISG 170
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y + L F Q++ E + D +TL+ A A+ K+ G+ H G
Sbjct: 171 YLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHSLVVVNGAGIN 230
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
M ++L+ MYAKC LV+ AR+VF +
Sbjct: 231 CYMGSSLISMYAKCG--------------------------------LVEDARKVFHGMH 258
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++++V W SM+ G + + +EA+ LF+ M G+ D+ + +V+S+C+ + L GR
Sbjct: 259 ERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRY 318
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH + + + ++ VK +LIDMYSKCG + +A F +DV +WT MI G GL
Sbjct: 319 VHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGL 378
Query: 299 GNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+EAL +F QME +G + PNE TF+ VL +C H GL+ +G F+RM VY++ P IEH+
Sbjct: 379 CSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIEHY 438
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RA LL +AE+FIK MP + +++LL AC E L + VA +++L
Sbjct: 439 GCMVDLLGRAKLLTEAEQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEFVAERILELEP 498
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ +VLLSN YA W +V E R +M + K+PG S I++
Sbjct: 499 KKCAGHVLLSNVYATTSRWVDVNELRTSMDNSRMSKQPGCSFIEV 543
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 149/315 (47%), Gaps = 34/315 (10%)
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL 139
+ D +L I FSA +RL + G +H + K+GL + N+L+ MY+ C A
Sbjct: 89 VTLDNYSLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATAR 148
Query: 140 RLFDEMGSRR-NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP 198
++ D + VS N +I+GY+ + P
Sbjct: 149 QVLDSAPQGACDTVSWNTIISGYL-------------------------------RGGMP 177
Query: 199 EEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTAL 258
+AL+ F +M+ E VT D+ +++ L A + ++ GRL H ++ N + ++ ++L
Sbjct: 178 NKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHSLVVVNGAGINCYMGSSL 237
Query: 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
I MY+KCG +E+A F+ ++VV WT+MI G G EA+ +F M+ G+K ++
Sbjct: 238 ISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDD 297
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
T +V+++C G + G + V+ + + L+D+ S+ G + +A E
Sbjct: 298 GTIATVVSSCAQMGALDLG-RYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEIFC 356
Query: 379 IMPAEDKFISYKALL 393
+ D F S+ A++
Sbjct: 357 GLTKRDVF-SWTAMI 370
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 163/499 (32%), Positives = 253/499 (50%), Gaps = 38/499 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K LH + + +G L+ Y R +FD+M R+V +N ++ Y +
Sbjct: 38 KKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNN 97
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ L++F++++ G D T + AC+ E L YG +H KVGL++ L +
Sbjct: 98 HRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVG 157
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD--- 179
N L+ MY KC + EA R+FDEM +++VS N ++ GY D A E+ E+ D
Sbjct: 158 NGLIAMYGKCGCLFEARRVFDEM-IWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQ 216
Query: 180 ----------------------------------KDIVLWRSMMHGCVKAKQPEEALELF 205
K+++ W M+ +K P +A++L+
Sbjct: 217 KPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLY 276
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+M V PD SVL AC LS L GR +H ++ + + + ++ +LIDMY++C
Sbjct: 277 LQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARC 336
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G L++A F + +DV +WT++I G G A+ +F +M G P+ FV++L
Sbjct: 337 GCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAIL 396
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+AC HSGL+ EG F++M YR+ P IEH+ CLVDLL RAG + +A IK MP E
Sbjct: 397 SACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPN 456
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
+ LLS+C ++ D+G A+N+++L + YVLLSN YA G W EV E R
Sbjct: 457 ERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSV 516
Query: 446 MKELQTRKKPGNSIIDLKH 464
MK + RK PG S ++L +
Sbjct: 517 MKRKKIRKTPGISNVELNN 535
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H +V K L ++ + NSLI Y R DA+ +FD+M FRDV SW +L+S Y
Sbjct: 306 LGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYG 365
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ LF +++ G D I V + SAC+ L G+ Y ++ +Y +
Sbjct: 366 MTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRI---YFKQMTDDYRIT 422
Query: 121 ME----NALLLMYAKCKEMDEALRLFDEMGSRRN 150
L+ + + +DEA + +M N
Sbjct: 423 PRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPN 456
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 159/463 (34%), Positives = 248/463 (53%), Gaps = 34/463 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH++V +TA D +I V NSLI Y + + +A +F M RDV SW T++S
Sbjct: 254 LGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCV 313
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D + L +K + G + D++T+ + SACA L +L G +H A + G +
Sbjct: 314 DNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVV 373
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ MY+KCK +++AL E+F +I DK
Sbjct: 374 VANSLIDMYSKCKRIEKAL--------------------------------EIFHQIPDK 401
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D++ W S+++G + EAL F+KMI + P+ ++S LSAC+ + L G+ +H
Sbjct: 402 DVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIH 460
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
L+ + D F+ A++D+Y +CG + AL F + KDV W ++ G A G G
Sbjct: 461 AHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFNLNE-KDVGAWNILLTGYAQKGKGA 519
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+ +F +M I P++ TF+S+L AC SG++TEG + F+RM Y + P ++H+ C+
Sbjct: 520 MVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACV 579
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +A EFI+ MP + + ALL+AC + LG+ A ++ K +S
Sbjct: 580 VDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESI 639
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+LL N YA G W EVA+ RR MKE PG S +++K
Sbjct: 640 GYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVK 682
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 163/336 (48%), Gaps = 33/336 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HAHV + D D+ V N+LI Y + AR+LFDKMP RD SWN ++S Y +
Sbjct: 154 GREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFE 213
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L LF ++ I D +T+ + SAC L G +H Y + + +++
Sbjct: 214 NDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISV 273
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ MY EA +F M R++VS +I+G
Sbjct: 274 YNSLIQMYLSVGHWKEAESVFSGMEC-RDVVSWTTIISG--------------------- 311
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
CV P++ALE +K M G PDE + SVLSAC+SL L G +H
Sbjct: 312 ----------CVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHE 361
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ V +LIDMYSKC +E+AL F++ KDV++WT++I GL E
Sbjct: 362 LAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFE 421
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
AL F +M K KPN T +S L+AC G + G
Sbjct: 422 ALIFFRKMILKS-KPNSVTLISALSACARVGALMCG 456
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/396 (29%), Positives = 189/396 (47%), Gaps = 45/396 (11%)
Query: 8 HVTKTALDS-----DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+V K L S + +GN+L+ + R +A +F +M RD+ SWN L+ Y
Sbjct: 54 YVWKAVLSSLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKA 113
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
E L L+ ++++ GI D T + +CA L G+ VH + + + +++
Sbjct: 114 GFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVV 173
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
NAL+ MY KC ++ A LFD+M +R I S N +I+GY + DE +
Sbjct: 174 NALITMYVKCGDVVSARMLFDKMPTRDRI-SWNAMISGYFEN----------DECL---- 218
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
E LELF +M + + PD M SV+SAC L + + G +H +
Sbjct: 219 -----------------EGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSY 261
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+++ + V +LI MY G +EA F +C+DVV+WTT+I G + L ++A
Sbjct: 262 VVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKA 321
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF---RRMGGVYRVQPTIEHFVC 359
L + ME G P+E T SVL+AC G + G +L R G + V
Sbjct: 322 LETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANS---- 377
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
L+D+ S+ + +A E +P +D IS+ ++++
Sbjct: 378 LIDMYSKCKRIEKALEIFHQIPDKD-VISWTSVING 412
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 137/310 (44%), Gaps = 42/310 (13%)
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
N L++ ++ V A VF + ++D+ W ++ G KA +EAL L+ +++ G+
Sbjct: 73 NALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIR 132
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
PD SVL +C+ +L GR VH +++ + D V ALI MY KCG + A +
Sbjct: 133 PDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARML 192
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F K +D ++W MI G E L +F++M I P+ T SV++AC G
Sbjct: 193 FDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDE 252
Query: 335 TEGCQLFRRM------GGVYRVQPTIEHFV-----------------------------C 359
G QL + G + I+ ++ C
Sbjct: 253 RLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGC 312
Query: 360 LVDLLSRAGL-LYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
+ +LL L Y+ E MP E ++ ++LSAC + + D+G K+ + G
Sbjct: 313 VDNLLPDKALETYKTMEITGTMPDE---VTIASVLSACASLGQLDMGMKLHELAERTG-- 367
Query: 419 SHEAYVLLSN 428
H YV+++N
Sbjct: 368 -HILYVVVAN 376
>gi|15241649|ref|NP_196466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171897|sp|Q9FNN9.1|PP370_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g08490
gi|9759343|dbj|BAB09998.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003927|gb|AED91310.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 849
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/465 (33%), Positives = 257/465 (55%), Gaps = 5/465 (1%)
Query: 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
GK +H+++ + + L D VGN+LI FY R + A F M +D+ SWN ++ +
Sbjct: 349 GKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFA 408
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL---EY 117
D + L L L+ E I D +T++ L C ++ + K VH Y+ K GL E
Sbjct: 409 DSPKQFQFLNLLHHLLNEAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLHDEE 468
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ NALL YAKC ++ A ++F + RR +VS N L++GY++ D A+ +F E+
Sbjct: 469 EPKLGNALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLLSGYVNSGSHDDAQMLFTEM 528
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
D+ W M+ ++ P EA+ +F+++ G+ P+ ++++L C+ L++L R
Sbjct: 529 STTDLTTWSLMVRIYAESCCPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVR 588
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
H +I++ + D +K L+D+Y+KCGSL+ A F +D+V +T M+ G A +G
Sbjct: 589 QCHGYIIRGGLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHG 647
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G EAL ++ M IKP+ ++L AC H+GLI +G Q++ + V+ ++PT+E +
Sbjct: 648 RGKEALMIYSHMTESNIKPDHVFITTMLTACCHAGLIQDGLQIYDSIRTVHGMKPTMEQY 707
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C VDL++R G L A F+ MP E + LL AC TY+ DLG VAN++++ +
Sbjct: 708 ACAVDLIARGGRLDDAYSFVTQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAES 767
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+VL+SN YA + W V E R MK+ + +K G S +++
Sbjct: 768 DDTGNHVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEV 812
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 100/388 (25%), Positives = 194/388 (50%), Gaps = 28/388 (7%)
Query: 2 GKGLHAHVT-KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +H++V ++ L + ++V NSL+ FY R+ +A LF +M +D+ SWN +++ Y
Sbjct: 246 GRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYA 305
Query: 61 DFSDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ + LF L+ +G V+ D +T++ + CA+L L GK +H Y + Y+L
Sbjct: 306 SNCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILR--HSYLL 363
Query: 120 ---NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID----MELVDLARE 172
++ NAL+ YA+ + A F M S ++I+S N +++ + D + ++L
Sbjct: 364 EDTSVGNALISFYARFGDTSAAYWAFSLM-STKDIISWNAILDAFADSPKQFQFLNLLHH 422
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE---VMVSVLSACSS 229
+ +E + D V S++ C+ + + E+ + G+ DEE + ++L A +
Sbjct: 423 LLNEAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLHDEEEPKLGNALLDAYAK 482
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
N++Y H+ L + + +L+ Y GS ++A + F + D+ TW+ M
Sbjct: 483 CGNVEYA---HKIFLGLSERRTLVSYNSLLSGYVNSGSHDDAQMLFTEMSTTDLTTWSLM 539
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH--SGLITEGCQLFRRMGGV 347
+ A NEA+ VF +++ +G++PN T +++L C S + C + GG+
Sbjct: 540 VRIYAESCCPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGGL 599
Query: 348 --YRVQPTIEHFVCLVDLLSRAGLLYQA 373
R++ T L+D+ ++ G L A
Sbjct: 600 GDIRLKGT------LLDVYAKCGSLKHA 621
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 151/333 (45%), Gaps = 38/333 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH V K + V S+++ Y + D + +F +M D WN +++ +
Sbjct: 40 GRALHGCVFKLGHIACSEVSKSVLNMYAKCRRMDDCQKMFRQMDSLDPVVWNIVLTGLS- 98
Query: 62 FSDSGEVLILFKQLIF-EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E + FK + F + +T I+ C RL + GK++H Y K GLE
Sbjct: 99 VSCGRETMRFFKAMHFADEPKPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTL 158
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAK G+I + A FD I DK
Sbjct: 159 VGNALVSMYAKF---------------------------GFIFPD----AYTAFDGIADK 187
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN---LQYGR 237
D+V W +++ G + +A F M+ E P+ + +VL C+S+ + GR
Sbjct: 188 DVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKNIACRSGR 247
Query: 238 LVHRFILQNNITQD-AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+H +++Q + Q FV +L+ Y + G +EEA F + KD+V+W +I G A+
Sbjct: 248 QIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASN 307
Query: 297 GLGNEALRVFYQMERKG-IKPNEATFVSVLAAC 328
+A ++F+ + KG + P+ T +S+L C
Sbjct: 308 CEWFKAFQLFHNLVHKGDVSPDSVTIISILPVC 340
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 153/359 (42%), Gaps = 43/359 (11%)
Query: 76 IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135
+ G D + + ACA + L G+ +H K+G + ++L MYAKC+ M
Sbjct: 13 LLSGFGTDHRVFLDVVKACASVSDLTSGRALHGCVFKLGHIACSEVSKSVLNMYAKCRRM 72
Query: 136 DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195
D+ ++F +M S D V+W ++ G +
Sbjct: 73 DDCQKMFRQMDSL--------------------------------DPVVWNIVLTG-LSV 99
Query: 196 KQPEEALELFKKM--IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
E + FK M DE P VL C L + G+ +H +I++ + +D
Sbjct: 100 SCGRETMRFFKAMHFADEP-KPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTL 158
Query: 254 VKTALIDMYSKCGSL-EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
V AL+ MY+K G + +A F KDVV+W +I G + + +A R F M ++
Sbjct: 159 VGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKE 218
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG--VYRVQPTIEHFVC--LVDLLSRAG 368
+PN AT +VL C S C+ R++ V R FVC LV R G
Sbjct: 219 PTEPNYATIANVLPVCA-SMDKNIACRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVG 277
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427
+ +A M ++D +S+ +++ + E+ ++ +N++ G+ S ++ ++S
Sbjct: 278 RIEEAASLFTRMGSKD-LVSWNVVIAGYASNCEWFKAFQLFHNLVHKGDVSPDSVTIIS 335
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 151/429 (35%), Positives = 250/429 (58%), Gaps = 4/429 (0%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILF-KQLIFEGIV-ADKITLVILFSAC 94
A+++F ++P +V SWN ++ + + L F +QL ++ L AC
Sbjct: 64 AQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKAC 123
Query: 95 ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSL 154
A LE + G VH K GL+ +++ +L+ MY K +E A ++FDEM R++VS
Sbjct: 124 AGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEM-PLRDVVSW 182
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID-EGV 213
N +++GY ++ AR VFD+++++D++ W +M+ G V+ + +A+E+F +M GV
Sbjct: 183 NTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGV 242
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
PD+ +VSVLSAC+ + L +GR + RF+ + ++ ALIDMY+KCG++EEA
Sbjct: 243 VPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEEARR 302
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F +DV++W+TMI G +G +EA + +M G+KPNE TF+ +L+AC H+GL
Sbjct: 303 IFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSACSHAGL 362
Query: 334 ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
+ +G +LF RM YR+ P + H+ C++DLLSRAG L +AE+ I MP E I + ALL
Sbjct: 363 VDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIVWGALL 422
Query: 394 SACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRK 453
C + +F G++VA ++++L ++ +YV ++ A G + A M+ K
Sbjct: 423 GGCRIHKDFRRGERVAQHLLELDSEYTGSYVYIAGAKASVGRVDDAANCWLRMQHKGIIK 482
Query: 454 KPGNSIIDL 462
PG S I++
Sbjct: 483 DPGCSKIEV 491
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 143/328 (43%), Gaps = 72/328 (21%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSW--------- 52
G +HA V K+ LD++I++G SL+ Y + A +FD+MP RDV SW
Sbjct: 132 GLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSGYCL 191
Query: 53 ----------------------NTLMSIY---NDFSDSGEVLILFKQLIFEGIVADKITL 87
N ++ Y +SD+ EV +++ G+V D +TL
Sbjct: 192 CGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKV--GGVVPDDVTL 249
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
V + SACA + L +G+ + + G L + NAL+ MYAKC M+EA R+FD M
Sbjct: 250 VSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEEARRIFDGMRE 309
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
R D++ W +M+ G +EA + K
Sbjct: 310 R--------------------------------DVISWSTMICGSGTHGDADEAFGYYSK 337
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCG 266
M++ GV P+E + +LSACS + G L R I + I +ID+ S+ G
Sbjct: 338 MLECGVKPNEVTFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAG 397
Query: 267 SLEEA--LVTFYKTDCKDVVTWTTMIEG 292
L+EA L+ + +V+ W ++ G
Sbjct: 398 RLDEAEDLINSMPIE-PNVIVWGALLGG 424
>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06140, mitochondrial; Flags: Precursor
gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
from Arabidopsis thaliana gb|AC008153 and contains
multiple PPR PF|01535 repeats [Arabidopsis thaliana]
gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 558
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 243/459 (52%), Gaps = 33/459 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H K LD D YV SL+ Y ++ A+ +FD++P R+ W LM Y +S
Sbjct: 131 IHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSK 190
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLNMEN 123
EV LF + G+ D +TL+ L AC + GK VH + + ++ ++
Sbjct: 191 DPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQA 250
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
+++ MY KC+ +D A +LF E RN+V
Sbjct: 251 SIIDMYVKCRLLDNARKLF-ETSVDRNVV------------------------------- 278
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
+W +++ G K ++ EA +LF++M+ E + P++ + ++L +CSSL +L++G+ VH ++
Sbjct: 279 MWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYM 338
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++N I DA T+ IDMY++CG+++ A F ++V++W++MI GL EAL
Sbjct: 339 IRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEAL 398
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
F++M+ + + PN TFVS+L+AC HSG + EG + F M Y V P EH+ C+VDL
Sbjct: 399 DCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDL 458
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L RAG + +A+ FI MP + ++ ALLSAC + E DL ++A ++ + + Y
Sbjct: 459 LGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSMEPEKSSVY 518
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
VLLSN YA G W V RR M RK G S ++
Sbjct: 519 VLLSNIYADAGMWEMVNCVRRKMGIKGYRKHVGQSATEV 557
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 7/224 (3%)
Query: 1 MGKGLHA-HVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+GK +H + ++ +D Y+ S+I Y + L +AR LF+ R+V W TL+S +
Sbjct: 228 VGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGF 287
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ E LF+Q++ E I+ ++ TL + +C+ L L +GK+VH Y + G+E
Sbjct: 288 AKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDA 347
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ + MYA+C + A +FD M RN++S + +IN + L + A + F ++
Sbjct: 348 VNFTSFIDMYARCGNIQMARTVFDMM-PERNVISWSSMINAFGINGLFEEALDCFHKMKS 406
Query: 180 KDI----VLWRSMMHGCVKAKQPEEALELFKKMI-DEGVTPDEE 218
+++ V + S++ C + +E + F+ M D GV P+EE
Sbjct: 407 QNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEE 450
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 104/217 (47%), Gaps = 7/217 (3%)
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNILINGYIDMELVDLAREVFD 175
+N ALL + ++ K ++ ++ ++ G +V + L N YI +D A F+
Sbjct: 4 VNRARALLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFN 63
Query: 176 EIV--DKDIVLWRSMMHGCVKAKQP--EEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
I ++ W +++ G K+K + L L+ +M D +V + AC L
Sbjct: 64 RIPCWKRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLG 123
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L+ G L+H ++N + +D +V +L++MY++ G++E A F + ++ V W +++
Sbjct: 124 LLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMK 183
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
G Y E R+F M G+ + T + ++ AC
Sbjct: 184 GYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKAC 220
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 233/462 (50%), Gaps = 32/462 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H+ V KT D D++V +++ FY + DA +FD M ++V SW ++
Sbjct: 122 LGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCI 181
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+F E + LF+ L+ G+ D +V + ACARL L G+ + + GL +
Sbjct: 182 EFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVF 241
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +L+ MY KC M+E AR VFD +V+K
Sbjct: 242 VATSLVDMYTKCGSMEE--------------------------------ARFVFDGMVEK 269
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIV W +M+ G P EA+ELF +M V PD MV LS+C+SL L+ G
Sbjct: 270 DIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAK 329
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + + T+LID Y+KCGS+EEAL + KD V + +I GLA YG
Sbjct: 330 GLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVG 389
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A VF QM + GI PNE TFV +L C H+GL+ +G F M + V PTIEH+ C+
Sbjct: 390 AAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCM 449
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL+RAG L +A IK MP + I + +LL C + E L + V +++L +
Sbjct: 450 VDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNS 509
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN Y+ W E + R + E +K PG S +++
Sbjct: 510 GHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEV 551
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 177/354 (50%), Gaps = 40/354 (11%)
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
L+ + IV D T + ACARL H G +H K G + + ++ ++ Y+
Sbjct: 91 LYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYS 150
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
KC + +A ++FD+M V K++V W M+
Sbjct: 151 KCGFLRDAWKVFDDM--------------------------------VVKNVVSWTGMIC 178
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
GC++ + EA++LF+ +++ G+ PD V+V VL AC+ L +L+ GR + R + + +++
Sbjct: 179 GCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSR 238
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
+ FV T+L+DMY+KCGS+EEA F KD+V W+ MI+G A+ GL EA+ +F++M
Sbjct: 239 NVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMR 298
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV---CLVDLLSRA 367
+ ++P+ V L++C G + +L G+ + + + V L+D ++
Sbjct: 299 KVNVRPDCYAMVGALSSCASLGAL----ELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKC 354
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
G + +A K+M +D+ + + A++S Y + V M K G +E
Sbjct: 355 GSMEEALGVYKMMKEKDRVV-FNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNE 407
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 134/296 (45%), Gaps = 21/296 (7%)
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+ + L+ +M+ G V + A+ L+ M + PD VL AC+ L+ G
Sbjct: 65 TNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGV 124
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
++H + + D FVKT ++ YSKCG L +A F K+VV+WT MI G +G
Sbjct: 125 MIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFG 184
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR--RMGGVYRVQPTIE 355
EA+ +F + G++P+ V VL AC G + G + R R G+ R +
Sbjct: 185 KFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSR---NVF 241
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM--M 413
LVD+ ++ G + +A F+ E + + A++ Y+ L ++ M
Sbjct: 242 VATSLVDMYTKCGSMEEA-RFVFDGMVEKDIVCWSAMIQG---YASNGLPREAIELFFEM 297
Query: 414 KLGNQSHEAYVLL------SNFYALE-GHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ N + Y ++ ++ ALE G+W A+ N +E + G S+ID
Sbjct: 298 RKVNVRPDCYAMVGALSSCASLGALELGNW---AKGLMNYEEFLSNPVLGTSLIDF 350
>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/454 (34%), Positives = 240/454 (52%), Gaps = 35/454 (7%)
Query: 44 MPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG 103
MP R+V SW ++++ Y+ G L + Q++ G++ D+ T + AC+ L + G
Sbjct: 1 MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 60
Query: 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR--------------- 148
+ +H + K + +NAL+ MY K + +AL +F M +R
Sbjct: 61 RQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQL 120
Query: 149 ------------------RNIVSLNILINGYIDMELVDLAREVFDEI-VDKDIVLWRSMM 189
++V+ N +I G+ EL D A F+E+ + D+V W +++
Sbjct: 121 GYELEALCYFKEMLHQGRPDLVAWNAIIAGFAYGELRD-AIFFFEEMRCNADLVSWNAIL 179
Query: 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249
C++ Q EE L K M PD + +VL A + +++ G VH + L+ +
Sbjct: 180 TACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLN 239
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
D V LID+Y+KCGSL+ A F DVV+W+++I G A +G G EAL++F M
Sbjct: 240 CDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTM 299
Query: 310 ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL 369
R +KPN TFV VL AC H GL+ EG +L+ M + + PT EH C+VDLL+RAG
Sbjct: 300 RRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGC 359
Query: 370 LYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429
L +AE FI M + + +K LL+AC T+ D+GK+ A N++K+ + A+VLL N
Sbjct: 360 LNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNI 419
Query: 430 YALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YA +G+W +VA R MK+ RK PG S I++K
Sbjct: 420 YASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVK 453
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/364 (23%), Positives = 143/364 (39%), Gaps = 99/364 (27%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LHAHV K+ + I N+LI Y + L DA +F +M RD+ SW ++++ ++
Sbjct: 59 LGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFS 118
Query: 61 DFSDSGEVLILFKQLIFEG------------------------------IVADKITLVIL 90
E L FK+++ +G AD ++ +
Sbjct: 119 QLGYELEALCYFKEMLHQGRPDLVAWNAIIAGFAYGELRDAIFFFEEMRCNADLVSWNAI 178
Query: 91 FSACARLEK-----------------------------------LHYGKTVHCYATKVGL 115
+AC R ++ + G VHCYA K GL
Sbjct: 179 LTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGL 238
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
++ N L+ +YAKC + A ++FD M
Sbjct: 239 NCDTSVTNGLIDLYAKCGSLKTAHKIFDSM------------------------------ 268
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
++ D+V W S++ G + EEAL+LFK M V P+ V VL+ACS + ++
Sbjct: 269 --INPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEE 326
Query: 236 G-RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-KDVVTWTTMIEGL 293
G +L + I + ++D+ ++ G L EA ++ D+V W T++
Sbjct: 327 GWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAAC 386
Query: 294 ANYG 297
+G
Sbjct: 387 KTHG 390
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 1/182 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + KT L+ D V N LI Y + A +FD M DV SW++L+ Y
Sbjct: 225 IGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYA 284
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYML 119
F E L LFK + + + +T V + +AC+ + + G ++ K G+
Sbjct: 285 QFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTR 344
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ ++ + A+ ++EA +M +IV L+ VD+ + + I+
Sbjct: 345 EHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILK 404
Query: 180 KD 181
D
Sbjct: 405 ID 406
>gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Glycine max]
Length = 667
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/462 (31%), Positives = 255/462 (55%), Gaps = 2/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H + + L SDI+V N+LI Y R AR +FD M RD+ +WN ++ Y+
Sbjct: 157 LAKEVHCLILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYS 216
Query: 61 DFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L+ +++ + + +T V + AC + L +G +H + + G+E +
Sbjct: 217 QRRLYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRFVKESGIEIDV 276
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ NA++ MYAKC +D A +F+ M ++ V+ +I+GY+D LVD A VF + +
Sbjct: 277 SLSNAVVAMYAKCGRLDYAREMFEGM-REKDEVTYGAIISGYMDYGLVDDAMGVFRGVEN 335
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+ +W +++ G V+ KQ E +L ++M G++P+ + S+L + S SNL+ G+ V
Sbjct: 336 PGLNMWNAVISGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASILPSFSYFSNLRGGKEV 395
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + ++ Q+ +V T++ID Y K G + A F + + ++ WT++I A +G
Sbjct: 396 HGYAIRRGYEQNVYVSTSIIDAYGKLGCICGARWVFDLSQSRSLIIWTSIISAYAAHGDA 455
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
AL ++ QM KGI+P+ T SVL AC HSGL+ E +F M Y +QP +EH+ C
Sbjct: 456 GLALGLYAQMLDKGIRPDPVTLTSVLTACAHSGLVDEAWNIFNSMPSKYGIQPLVEHYAC 515
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+V +LSRAG L +A +FI MP E + LL + + ++GK +++ ++ ++
Sbjct: 516 MVGVLSRAGKLSEAVQFISEMPIEPSAKVWGPLLHGASVFGDVEIGKFACDHLFEIEPEN 575
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
Y++++N YA G W + E R MK + +K G+S I+
Sbjct: 576 TGNYIIMANLYAHAGKWEQAGEVRERMKVIGLQKIRGSSWIE 617
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 155/349 (44%), Gaps = 39/349 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LHA + ++ D ++ + LI FY + AR +FD P R+ +WN ++ Y+
Sbjct: 53 GKQLHARLILLSVTPDNFLASKLILFYSKSNHAHFARKVFDTTPHRNTFTWNAMLLGYSF 112
Query: 62 FSDSGEVLILFKQLIFE---GIVADKITLVILFSACA-RLEKLHYGKTVHCYATKVGLEY 117
S L LF F D T+ + A A K VHC + GL
Sbjct: 113 NSMFRHALNLFGSFTFSTTPNASPDNFTISCVLKALASSFCSPELAKEVHCLILRRGLYS 172
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + NAL+ Y +C E+ A +FD M S R+IV+ N +I GY L D + ++ E+
Sbjct: 173 DIFVLNALITCYCRCDEVWLARHVFDGM-SERDIVTWNAMIGGYSQRRLYDECKRLYLEM 231
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
++ V P+ VSV+ AC +L +G
Sbjct: 232 LNV------------------------------SAVAPNVVTAVSVMQACGQSMDLAFGM 261
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+HRF+ ++ I D + A++ MY+KCG L+ A F KD VT+ +I G +YG
Sbjct: 262 ELHRFVKESGIEIDVSLSNAVVAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYMDYG 321
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
L ++A+ VF +E G+ A ++ + G+ L R+M G
Sbjct: 322 LVDDAMGVFRGVENPGLNMWNAVISGMVQNKQFEGVF----DLVRQMQG 366
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 110/244 (45%), Gaps = 15/244 (6%)
Query: 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI---DEGVTPDEEVMVSVLS 225
AR+VFD ++ W +M+ G AL LF +PD + VL
Sbjct: 87 FARKVFDTTPHRNTFTWNAMLLGYSFNSMFRHALNLFGSFTFSTTPNASPDNFTISCVLK 146
Query: 226 A-CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
A SS + + + VH IL+ + D FV ALI Y +C + A F +D+V
Sbjct: 147 ALASSFCSPELAKEVHCLILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIV 206
Query: 285 TWTTMIEGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
TW MI G + L +E R++ +M + PN T VSV+ AC S + G +L R
Sbjct: 207 TWNAMIGGYSQRRLYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHR- 265
Query: 344 MGGVYRVQPTIEHFVCL----VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
+ + IE V L V + ++ G L A E + M +D+ ++Y A++S + Y
Sbjct: 266 ----FVKESGIEIDVSLSNAVVAMYAKCGRLDYAREMFEGMREKDE-VTYGAIISGYMDY 320
Query: 400 SEFD 403
D
Sbjct: 321 GLVD 324
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
L +++ GV D S L CS L+ G+ +H ++ ++T D F+ + LI YS
Sbjct: 23 LRRRLSPPGV--DFAAYGSALQHCSDHRLLRQGKQLHARLILLSVTPDNFLASKLILFYS 80
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM---ERKGIKPNEAT 320
K A F T ++ TW M+ G + + AL +F P+ T
Sbjct: 81 KSNHAHFARKVFDTTPHRNTFTWNAMLLGYSFNSMFRHALNLFGSFTFSTTPNASPDNFT 140
Query: 321 FVSVLAACRHSGLITE-----GCQLFRRMGGVY 348
VL A S E C + RR G+Y
Sbjct: 141 ISCVLKALASSFCSPELAKEVHCLILRR--GLY 171
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 156/492 (31%), Positives = 253/492 (51%), Gaps = 62/492 (12%)
Query: 36 DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
+A +FD++P + WN + Y+ +V++LF+Q+ ++ + T ++ +C
Sbjct: 3 NAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCV 62
Query: 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR------- 148
++ L G+ VHC+ K G + L+ MYA + A R+F EM R
Sbjct: 63 KINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTA 122
Query: 149 -----------------------RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
R+IV N +I+GYI+ + V ARE+FD++ +KD++ W
Sbjct: 123 MINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSW 182
Query: 186 RSMMHG---------CVK--AKQPE--------------------EALELFKKMIDEG-V 213
++++G C + + PE E L FK+M+ +G V
Sbjct: 183 NTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTV 242
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
P++ +V+VLSAC+ L L G+ VH + + + +V+ AL+DMY+KCG +E AL
Sbjct: 243 VPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALD 302
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F D KD+++W T+I GLA +G G +AL +F M+ G P+ TF+ +L AC H GL
Sbjct: 303 VFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGL 362
Query: 334 ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
+ +G F+ M Y + P IEH+ C+VDLL RAGLL A +FI+ MP E + + ALL
Sbjct: 363 VEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALL 422
Query: 394 SACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRK 453
AC Y +L + +++ ++ YV+LSN Y G W +VA + M++ +K
Sbjct: 423 GACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFKK 482
Query: 454 KPGNSIIDLKHY 465
PG S+I++ Y
Sbjct: 483 LPGCSLIEVNDY 494
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 136/319 (42%), Gaps = 52/319 (16%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ D+ N++++ Y LF++MP R+V SWN L+ Y EVL FK+
Sbjct: 176 NKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKR 235
Query: 75 LIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
++ +G +V + TLV + SACARL L GK VH YA G + + + NAL+ MYAKC
Sbjct: 236 MLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCG 295
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
++ AL +F M +KD++ W +++ G
Sbjct: 296 VVETALDVFKSMD--------------------------------NKDLISWNTIIGGLA 323
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+AL LF M G PD + +L AC+ + ++ G F ++T D
Sbjct: 324 VHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDG-----FSYFKSMTDDYS 378
Query: 254 VKT------ALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL---ANYGLGNEAL 303
+ ++D+ + G L A+ K + D V W ++ N L AL
Sbjct: 379 IVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELAL 438
Query: 304 RVFYQMERKGIKPNEATFV 322
+ E K N A +V
Sbjct: 439 EKLIEFEPK----NPANYV 453
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 31/223 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + ++YV N+L+ Y + + A +F M +D+ SWNT++
Sbjct: 264 LGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLA 323
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L LF + G D IT + + AC H + G Y +
Sbjct: 324 VHGHGADALNLFSHMKIAGENPDGITFIGILCAC-----------THMGLVEDGFSYFKS 372
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
M + Y+ ++ + D +G R +++ VD R++ ++
Sbjct: 373 MTDD----YSIVPRIEHYGCIVDLLG-RAGLLA-----------HAVDFIRKM---PIEA 413
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVS 222
D V+W +++ C K E A +K+I+ E P VM+S
Sbjct: 414 DAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLS 456
>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 808
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 164/539 (30%), Positives = 267/539 (49%), Gaps = 81/539 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS---I 58
+ +H H + L +D++V +L+ Y + A F A +F +MP RDV +WN +++ +
Sbjct: 148 ARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAGYAL 207
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY- 117
+ +SD+ L+L + + + TLV L A+ L G+ VH Y+ + +
Sbjct: 208 HGKYSDTIACLLLMQ----DDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHD 263
Query: 118 ---MLNMENALLLMYAK-------------------------------CKEMDEALRLFD 143
+ + ALL MYAK C M EA LF
Sbjct: 264 HKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFK 323
Query: 144 EM---------------------------------------GSRRNIVSLNILINGYIDM 164
+M G ++ + N L++ Y
Sbjct: 324 DMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKA 383
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
L+D A +FD++V KD V + +++ G V+ + +EA +F+KM V PD MVS++
Sbjct: 384 GLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLI 443
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
ACS L+ LQ+G+ H ++ I + + ALIDMY+KCG ++ + F +D+V
Sbjct: 444 PACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIV 503
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
+W TMI G +GLG EA +F M+ + +P++ TF+ +++AC HSGL+TEG + F M
Sbjct: 504 SWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMM 563
Query: 345 GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDL 404
Y + P +EH++ +VDLL+R G L +A +FI+ MP + + ALL AC + DL
Sbjct: 564 AHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDL 623
Query: 405 GKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
GK+V++ + +LG + +VLLSN ++ G + E AE R KE +K PG S I++
Sbjct: 624 GKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEIN 682
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 143/318 (44%), Gaps = 37/318 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LHA + K+ L +D+ GNSL+ Y + L A LFD+M +D S++ L+S Y
Sbjct: 353 LGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYV 412
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E +F+++ + D T+V L AC+ L L +GK H G+ +
Sbjct: 413 QNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETS 472
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC +D + ++FD M + R+IVS N +I GY
Sbjct: 473 ICNALIDMYAKCGRIDLSRQIFDVMPA-RDIVSWNTMIAGY------------------- 512
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLV 239
+HG K EA LF M + PD+ + ++SACS + G R
Sbjct: 513 -------GIHGLGK-----EATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWF 560
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL---AN 295
H + IT ++D+ ++ G L+EA K DV W ++ N
Sbjct: 561 HMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKN 620
Query: 296 YGLGNEALRVFYQMERKG 313
LG + + Q+ +G
Sbjct: 621 IDLGKQVSSMIQQLGPEG 638
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 157/388 (40%), Gaps = 40/388 (10%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR LFD++P + +N L+ Y+ + + + + T + AC+
Sbjct: 82 ARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKACSA 141
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
L L + VHC+A + GL L + AL+ +YAKC A +F M +R
Sbjct: 142 LLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPAR-------- 193
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
D+V W +M+ G + + + M D+ P+
Sbjct: 194 ------------------------DVVAWNAMLAGYALHGKYSDTIACLLLMQDDH-APN 228
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD----AFVKTALIDMYSKCGSLEEAL 272
+V++L + L GR VH + ++ D V TAL+DMY+KCG L A
Sbjct: 229 ASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYAS 288
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV-SVLAACRHS 331
F ++ VTW+ ++ G G EA +F M +G+ T V S L AC +
Sbjct: 289 RVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANL 348
Query: 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKA 391
+ G QL + + + L+ + ++AGL+ QA M +D +SY A
Sbjct: 349 SDLCLGKQLHALLAK-SGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDT-VSYSA 406
Query: 392 LLSACITYSEFDLGKKVANNMMKLGNQS 419
L+S + + D +V M Q
Sbjct: 407 LVSGYVQNGKADEAFRVFRKMQACNVQP 434
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 101/237 (42%), Gaps = 15/237 (6%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
+ LAR +FD+I I + +++ P+ VL A
Sbjct: 79 LSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKA 138
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
CS+L +L+ R VH + + D FV TAL+D+Y+KC S A F + +DVV W
Sbjct: 139 CSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAW 198
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
M+ G A +G ++ + M+ PN +T V++L G +++G R
Sbjct: 199 NAMLAGYALHGKYSDTIACLLLMQDDH-APNASTLVALLPLLAQHGALSQG-----RAVH 252
Query: 347 VYRVQPTIEH--------FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
Y V+ H L+D+ ++ G L A + M ++ +++ AL+
Sbjct: 253 AYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNE-VTWSALVGG 308
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 166/474 (35%), Positives = 242/474 (51%), Gaps = 44/474 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H SDI+V ++LI Y + DAR LFD++P R+V SW +++S Y
Sbjct: 105 GKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQ 164
Query: 62 FSDSGEVLILFKQLIF-----------EGIVADKITLVILFSACARLEKLHYGKTVHCYA 110
+ E + LFK+ + G+ D + L + SACAR+ + VH A
Sbjct: 165 NERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLA 224
Query: 111 TKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLA 170
K G E L + N L+ YAKC E + ++
Sbjct: 225 VKKGFEGCLAVGNTLMDAYAKCGE--------------------------------ISVS 252
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSS 229
R+VFD + + D+ W S++ + EA LF M+ G V + + +VL AC+
Sbjct: 253 RKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAH 312
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
LQ G+ +H +++ + + V T+++DMY KCG +E A F + K+V +WT M
Sbjct: 313 SGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVM 372
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
+ G +G G EA++VFY+M R GIKPN TFVSVLAAC H+GL+ EG F +M +
Sbjct: 373 VAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFD 432
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
V+P IEH+ C+VDLL RAG L +A I+ M + FI + +LL AC + +LG+ A
Sbjct: 433 VEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISA 492
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ KL + YVLLSN YA G W +V R MK K PG SI++ K
Sbjct: 493 RKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHK 546
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 136/292 (46%), Gaps = 26/292 (8%)
Query: 49 VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHC 108
V SWN++++ + DS + L F + + ++ T +C+ L L GK +H
Sbjct: 51 VYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQ 110
Query: 109 YATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168
A G + + +AL+ MY+KC +++A +LFDE+ RN+VS +I+GY+ E
Sbjct: 111 QAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEI-PERNVVSWTSMISGYVQNERAR 169
Query: 169 LAREVFDE--IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
A +F E +VD+ + +++ GV D ++ V+SA
Sbjct: 170 EAVFLFKEFLLVDETD----------------------YDEIVGVGVGVDSVLLGCVISA 207
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C+ + VH ++ V L+D Y+KCG + + F + DV +W
Sbjct: 208 CARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSW 267
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEG 337
++I A GL EA +F M ++G ++ N T +VL AC HSG + G
Sbjct: 268 NSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIG 319
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
Query: 171 REVFDEIVDKDIVL-WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
R +F + VDK V W S++ ++ +AL F M + P+ + +CSS
Sbjct: 39 RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
L +L G+ +H+ D FV +ALIDMYSKCG L +A F + ++VV+WT+M
Sbjct: 99 LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158
Query: 290 IEGLANYGLGNEALRVF 306
I G EA+ +F
Sbjct: 159 ISGYVQNERAREAVFLF 175
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 89/183 (48%), Gaps = 13/183 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V K L+ ++ VG S++ Y + AR FD++ ++V SW +++ Y
Sbjct: 318 IGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYG 377
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHC-YATKVGL 115
E + +F ++I GI + IT V + +AC+ E H+ + C + + G+
Sbjct: 378 MHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGI 437
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDL-AR 171
E+ M + L + + EA L EM + + + L+ + ++EL ++ AR
Sbjct: 438 EHYSCMVDLL----GRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISAR 493
Query: 172 EVF 174
++F
Sbjct: 494 KLF 496
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
D V +W ++I A G +AL F M + + PN +TF + +C + G
Sbjct: 46 VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAG 105
Query: 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
Q+ ++ V+ I L+D+ S+ G L A + +P E +S+ +++S
Sbjct: 106 KQIHQQ-AFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIP-ERNVVSWTSMISG 161
>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 975
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/461 (32%), Positives = 254/461 (55%), Gaps = 33/461 (7%)
Query: 3 KGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +H + + + SD V N+ + Y + A +F M + V SWN L+ +
Sbjct: 420 KEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQ 479
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L L+ + G+ D T+ L SACARL+ L GK +H + G E
Sbjct: 480 NGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFE----- 534
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+DE + + ++VSL Y+ + LA+ FD + +K+
Sbjct: 535 -------------LDEFICI--------SLVSL------YVQCGKILLAKLFFDNMEEKN 567
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M++G + + P +AL++F +M+ + PDE ++ L ACS +S L+ G+ +H
Sbjct: 568 LVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHC 627
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F +++++T+ +FV +LIDMY+KCG +E++ F + K VTW +I G +G G +
Sbjct: 628 FAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRK 687
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ +F M+ G +P+ TF+++L AC H+GL+ EG + +M ++ ++P +EH+ C+V
Sbjct: 688 AIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVV 747
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L RAG L +A E + +P + + +LLS+C Y + D+G+KVAN +++LG E
Sbjct: 748 DMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAE 807
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVL+SNFYA G W EV + R+ MKE+ +K G S I++
Sbjct: 808 NYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEI 848
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 197/410 (48%), Gaps = 48/410 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H KT + SD++VGN+LI YG+ A +FDKMP R++ SWN++M
Sbjct: 214 LGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACL 273
Query: 61 DFSDSGEVLILFKQLIF--EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ E LFK L+ EG++ D T+V + CAR ++ G H A K+GL
Sbjct: 274 ENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGE 333
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L + ++LL MY+KC + EA LFD
Sbjct: 334 LKVNSSLLDMYSKCGYLCEARVLFDTN--------------------------------- 360
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+K+++ W SM+ G K + A EL +KM +++ V +E +++VL C +Q+ +
Sbjct: 361 EKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEE--EIQFLK 418
Query: 238 L--VHRFILQNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
L +H + L++ Q D V A + Y+KCGSL A F + K V +W +I G
Sbjct: 419 LKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHV 478
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
G +AL ++ M G++P+ T S+L+AC ++ G ++ G + R +
Sbjct: 479 QNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIH---GSMLRNGFEL 535
Query: 355 EHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
+ F+C LV L + G + A+ F M E + + +++ + +EF
Sbjct: 536 DEFICISLVSLYVQCGKILLAKLFFDNM-EEKNLVCWNTMING-FSQNEF 583
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 166/335 (49%), Gaps = 42/335 (12%)
Query: 1 MGKGLHAHV-TKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+G+ +H + T +D+ + L+ Y D+ ++F+ +++ WN L+S Y
Sbjct: 111 IGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGY 170
Query: 60 NDFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
S + + +F ++I V D TL + AC + + G+ VH +A K +
Sbjct: 171 LRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSD 230
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + NAL+ MY K ++ A+++FD+M +RN+VS
Sbjct: 231 VFVGNALIAMYGKFGFVESAVKVFDKM-PQRNLVS------------------------- 264
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMI--DEGVTPDEEVMVSVLSACSSLSNLQYG 236
W S+M+ C++ EE+ LFK ++ DEG+ PD MV+V+ C+ ++ G
Sbjct: 265 ------WNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLG 318
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA-- 294
+ H L+ + + V ++L+DMYSKCG L EA V F T+ K+V++W +MI G +
Sbjct: 319 MVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLF-DTNEKNVISWNSMIGGYSKD 377
Query: 295 -NYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
++ E LR QME K +K NE T ++VL C
Sbjct: 378 RDFRGAFELLRKM-QMEDK-VKVNEVTLLNVLPVC 410
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 141/301 (46%), Gaps = 42/301 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + + + D ++ SL+ Y + A++ FD M +++ WNT+++ ++
Sbjct: 521 GKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQ 580
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L +F Q++ I D+I+++ AC+++ L GK +HC+A K L +
Sbjct: 581 NEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFV 640
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MYAKC M+++ +FD + + V+ N+LI GY
Sbjct: 641 TCSLIDMYAKCGCMEQSQNIFDRV-HLKGEVTWNVLITGY-------------------- 679
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS----NLQY-G 236
+HG +A+ELFK M + G PD +++L+AC+ L+Y G
Sbjct: 680 ------GIHG-----HGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLG 728
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK-TDCKDVVTWTTMIEGLAN 295
++ F ++ + A V +DM + G L EAL + D D W++++ N
Sbjct: 729 QMQSLFGIKPKLEHYACV----VDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRN 784
Query: 296 Y 296
Y
Sbjct: 785 Y 785
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 111/231 (48%), Gaps = 16/231 (6%)
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLS 231
VF+ K++ LW +++ G ++ +A+ +F +MI PD + V+ AC +
Sbjct: 151 VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
+++ G VH F L+ + D FV ALI MY K G +E A+ F K +++V+W +++
Sbjct: 211 DVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMY 270
Query: 292 GLANYGLGNEALRVFYQMER--KGIKPNEATFVSVLAACRHS-----GLITEGCQLFRRM 344
G+ E+ +F + +G+ P+ AT V+V+ C G++ G L +
Sbjct: 271 ACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGL 330
Query: 345 GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
G +V + L+D+ S+ G L +A E IS+ +++
Sbjct: 331 CGELKVNSS------LLDMYSKCGYLCEARVLFDT--NEKNVISWNSMIGG 373
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 85/184 (46%), Gaps = 9/184 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH K+ L +V SLI Y + ++ +FD++ + +WN L++ Y
Sbjct: 621 LGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYG 680
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR----LEKLHY-GKTVHCYATKVGL 115
+ + LFK + G D +T + L +AC E L Y G+ + K L
Sbjct: 681 IHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKL 740
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
E+ ++ M + ++EAL L +E+ + + + L++ + +D+ +V +
Sbjct: 741 EHYA----CVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVAN 796
Query: 176 EIVD 179
++++
Sbjct: 797 KLLE 800
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/416 (36%), Positives = 234/416 (56%), Gaps = 5/416 (1%)
Query: 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLH--YGKTVHC 108
SW + +++ + E + F + GI + IT + L SAC G +H
Sbjct: 23 SWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNFPSGSEGLGYLLHG 82
Query: 109 YATKVGLEYMLNM-ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
YA K+GLE M A+L MY+K + +A +FD + +N V+ N +I+GY+ V
Sbjct: 83 YACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYI-EDKNSVTWNTMIDGYMRNGQV 141
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227
D A +VFD++ D+D++ W +M+ G VK EEAL F++M GV PD ++S ++AC
Sbjct: 142 DNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVAAC 201
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
++L L +G VHR++L + + V +LID+Y +CG +E A F K + + VV+W
Sbjct: 202 TNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWN 261
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
++I G A G NE+L F +M+R+G P+ TF L AC H GL+ EG Q F+ M
Sbjct: 262 SVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHD 321
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD-LGK 406
YR+ P IEH+ CLVDL SRAG L A ++ MP + + +LL+AC + L +
Sbjct: 322 YRISPRIEHYGCLVDLYSRAGRLEDAFIVVESMPMKPNEVVIGSLLAACRNHGNHTILAE 381
Query: 407 KVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ + L +SH YV+LSN YA +G W ++ RR MK L +K+PG S I++
Sbjct: 382 RLMKYITDLDVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGYSSIEI 437
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 132/323 (40%), Gaps = 75/323 (23%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
D + N++I Y R +A +FDKMP RD+ SW +++ + E L F++
Sbjct: 122 DKNSVTWNTMIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFRE 181
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+ G+ D + ++ +AC L L +G VH Y + + N+L+ +Y +C
Sbjct: 182 MQISGVNPDYVAIISAVAACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGC 241
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
++ A ++FD+M +R +VS W S++ G
Sbjct: 242 VEFARQVFDKM-EKRTVVS-------------------------------WNSVIVGFAA 269
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS----NLQYGRLV-HRFILQNNIT 249
E+L F+KM EG TPD L+ACS + QY +++ H + + I
Sbjct: 270 NGNANESLVYFRKMQREGFTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPRIE 329
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
L+D+YS+ G LE+A + +
Sbjct: 330 HYG----CLVDLYSRAGRLEDAFIV----------------------------------V 351
Query: 310 ERKGIKPNEATFVSVLAACRHSG 332
E +KPNE S+LAACR+ G
Sbjct: 352 ESMPMKPNEVVIGSLLAACRNHG 374
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 9/162 (5%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H +V +++ V NSLI Y R AR +FDKM R V SWN+++ +
Sbjct: 210 GLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAA 269
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTV-HCYATKVGLE 116
++ E L+ F+++ EG D +T +AC+ + E Y + + H Y +E
Sbjct: 270 NGNANESLVYFRKMQREGFTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPRIE 329
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
+ L+ +Y++ +++A + + M + N V + L+
Sbjct: 330 HY----GCLVDLYSRAGRLEDAFIVVESMPMKPNEVVIGSLL 367
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
++ + +V+WT+ I L+ G EA+R F M GI+PN TF+++L+AC + +E
Sbjct: 15 QSTSETIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNFPSGSE 74
Query: 337 G 337
G
Sbjct: 75 G 75
>gi|242038427|ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
gi|241920462|gb|EER93606.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
Length = 752
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/455 (34%), Positives = 255/455 (56%), Gaps = 5/455 (1%)
Query: 1 MGKGLHAHVTKTALD-SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
MG AH ++ D+ +L+ Y + AR + D MP R+ SW+TL++ +
Sbjct: 300 MGDAAAAHRVFDDMEVRDVVSWTALLDVYAELGDLEGARRVLDAMPERNEVSWSTLIARH 359
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
DS E L L+ Q++ EG + + SACA L L G +H A K+G L
Sbjct: 360 EQKGDSAEALKLYSQMLAEGCRPNISCFSSVLSACATLHDLRGGTRIHANALKMGFSSSL 419
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY-IDMELVDLAREVFDEIV 178
+ ++L+ MY KCK+ +A R+F+ + +N V N LI+GY + ++V+ A E+F ++
Sbjct: 420 FVSSSLIDMYCKCKQCTDAQRIFNSL-PEKNTVCWNSLISGYSWNGKMVE-AEELFKKMP 477
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++ W +M+ G + ++ +AL F M+ G P E + SVL AC++L +L+ G++
Sbjct: 478 ARNAASWNTMISGYAENRRFGDALNYFCAMLASGQIPGEITLSSVLLACANLCSLEMGKM 537
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH I++ I + F+ TAL DMY+K G L+ + FY+ K+ +TWT M++GLA G
Sbjct: 538 VHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRMFYQMPEKNNITWTAMVQGLAENGF 597
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
E++ +F M I PNE TF+++L AC H GL+ + F M + + P +H+
Sbjct: 598 AEESILLFENMIANRIAPNEHTFLAILFACSHCGLVEQAIHYFETMQA-HGIPPKDKHYT 656
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VD+L+RAG L +AEE + +P++ S+ +LLSAC TY ++G++ A + +L
Sbjct: 657 CMVDVLARAGRLPEAEELLMKVPSKLDTSSWSSLLSACNTYRNKEIGERAAKKLHELEKD 716
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRK 453
+ YVLLSN YA G W + AE R M+ + +K
Sbjct: 717 NTAGYVLLSNMYASCGKWKDAAETRILMQGPRLKK 751
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/423 (23%), Positives = 170/423 (40%), Gaps = 102/423 (24%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYG----------------------------------R 30
LHAH ++ L +D V ++L+ Y +
Sbjct: 107 LHAHTLRSGLAADRSVASNLLTAYAAFARAADRDRAFRDCVSADAASSFTYDFMVSEHVK 166
Query: 31 MALFTDARVLFDKMPFRDVGSWNTLMS--------------------------------- 57
AR LFD MP + V S+ T++
Sbjct: 167 AGDIASARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCPLYSVAFFTAMIAGF 226
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL-E 116
+ N+ + +F++++ + + +TL+ + AC + V A K L E
Sbjct: 227 VRNELHK--DAFPVFRKMLRCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAIKWNLFE 284
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + N+L+ +Y + + A R+FD+M R++VS L++ Y ++ ++ AR V D
Sbjct: 285 KSIEVHNSLITLYLRMGDAAAAHRVFDDM-EVRDVVSWTALLDVYAELGDLEGARRVLDA 343
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ +++ V W +++ + EAL+L+ +M+ EG P+ SVLSAC++L +L+ G
Sbjct: 344 MPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFSSVLSACATLHDLRGG 403
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKC------------------------------- 265
+H L+ + FV ++LIDMY KC
Sbjct: 404 TRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPEKNTVCWNSLISGYSWN 463
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G + EA F K ++ +W TMI G A +AL F M G P E T SVL
Sbjct: 464 GKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASGQIPGEITLSSVL 523
Query: 326 AAC 328
AC
Sbjct: 524 LAC 526
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 40/174 (22%)
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
T ++D K GS+++A+ + + V +T MI G L +A VF +M R ++
Sbjct: 189 TTMVDALMKRGSVKDAVKLYERCPLYSVAFFTAMIAGFVRNELHKDAFPVFRKMLRCSVR 248
Query: 316 PNEATFVSVLAAC---------------------------RHSGLITEGCQLFRRMG--- 345
PN T + V+ AC H+ LIT L+ RMG
Sbjct: 249 PNVVTLICVIKACVGAGEFDLAMGVVGLAIKWNLFEKSIEVHNSLIT----LYLRMGDAA 304
Query: 346 GVYRVQPTIE-----HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
+RV +E + L+D+ + G L A + MP ++ +S+ L++
Sbjct: 305 AAHRVFDDMEVRDVVSWTALLDVYAELGDLEGARRVLDAMPERNE-VSWSTLIA 357
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 220/362 (60%), Gaps = 9/362 (2%)
Query: 107 HCYATKVGLEYMLNMENALLLMYAKC--KEMDEALRLFDEMGSRRNIVSLNILINGYIDM 164
HC A K G+ + N +L Y+KC +++ A +LFDEM ++ V+L+ +I Y +
Sbjct: 1 HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEM-PHKDTVTLDTMITAYFES 59
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
A +VF+ + +KDIV W S+++G +P EAL L+K+M EGV PD MVS+L
Sbjct: 60 -----AYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLL 114
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-KDV 283
SAC+ L+ L GR H ++++ + ++ AL+D+Y+KCG++ EA F + ++V
Sbjct: 115 SACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNV 174
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
V+WT++I GLA G G EAL F MER+G+ P+E TFV VL AC H G++ EG + F+R
Sbjct: 175 VSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKR 234
Query: 344 MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
M Y + P IEH+ C+VDLL RAGLL +A ++I+ MP + + ++ LL AC +
Sbjct: 235 MKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLG 294
Query: 404 LGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
LG +++L + YVLLSN YA E W++V E RR M RK PG S+++L
Sbjct: 295 LGAFARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELG 354
Query: 464 HY 465
++
Sbjct: 355 NH 356
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 130/286 (45%), Gaps = 36/286 (12%)
Query: 32 ALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILF 91
A F A +F+ MP +D+ +WN++++ + E L L+K++ EG+ D T+V L
Sbjct: 55 AYFESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLL 114
Query: 92 SACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNI 151
SACA L L G+ H Y KVGL L+ NALL +YAKC + EA ++FDEMG RN+
Sbjct: 115 SACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNV 174
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
VS W S++ G +EALE FK M E
Sbjct: 175 VS-------------------------------WTSLIVGLAVNGFGKEALEHFKDMERE 203
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ P E V VL ACS + G R Q +I ++D+ + G L+E
Sbjct: 204 GLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKE 263
Query: 271 ALVTFYKTDCK-DVVTWTTMIEGL---ANYGLGNEALRVFYQMERK 312
A + + V W T++ + GLG A Q+E K
Sbjct: 264 AYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPK 309
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 43/200 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLMS-- 57
+G+ H ++ K L+ +++ N+L+ Y + ++AR +FD+M R+V SW +L+
Sbjct: 125 LGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGL 184
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
N F E L FK + EG+V +IT V + AC+ HC G EY
Sbjct: 185 AVNGFGK--EALEHFKDMEREGLVPSEITFVGVLYACS-----------HCGIVNEGFEY 231
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
M KE + + + G +++ L +E +D I
Sbjct: 232 FKRM-----------KEQYDIVPRIEHYGCMVDLLG------------RAGLLKEAYDYI 268
Query: 178 VD----KDIVLWRSMMHGCV 193
D + V+WR+++ C
Sbjct: 269 QDMPLQPNAVIWRTLLGACT 288
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/468 (33%), Positives = 258/468 (55%), Gaps = 10/468 (2%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HA V K AL ++ +I R A LF ++ + +N ++ S
Sbjct: 8 HALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMY 67
Query: 66 GEVLILFKQLIFEG---------IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
+ +KQ++ E I+ D+ T + ACARL + GK VH K G +
Sbjct: 68 SLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKK 127
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
L ENAL+ MY KC + +A LFDEM R +S N +I+G++ + + AR +FDE
Sbjct: 128 SHLITENALIDMYTKCDNLLDAHNLFDEM-HERGAISWNGIISGHVRLGQMRRARALFDE 186
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ ++ IV W +++ G + +AL++F++M G+ PDE ++SVL AC+ L L+ G
Sbjct: 187 MPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETG 246
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+ +H F +N + + + ALI+MY+KCG +++A F + +DV++W+TMI GLAN+
Sbjct: 247 KWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANH 306
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G EA+ +F +M++ IKPN TFV +L+AC H+G EG F M + ++P IEH
Sbjct: 307 GKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEH 366
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ LVDLL RAG L QA + ++ MP + + +LLS+C T+ ++ ++ +L
Sbjct: 367 YGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEELE 426
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVLLSN YA G W +V+ R+ ++ + +K PG S+I++ +
Sbjct: 427 PDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVNN 474
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 134/323 (41%), Gaps = 65/323 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARV--------------------- 39
+GK +HA K S + N+LI Y + DA
Sbjct: 113 LGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHV 172
Query: 40 ----------LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
LFD+MP R + SW ++S Y + L +F+++ GI D+ +++
Sbjct: 173 RLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIIS 232
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ ACA+L L GK +H + + GL + NAL+ MY KC +D+A +LFD+M R
Sbjct: 233 VLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGR- 291
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D++ W +M+ G + EA+ +F++M
Sbjct: 292 -------------------------------DVISWSTMIGGLANHGKVREAIAIFERMK 320
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSL 268
+ P+ V +LSAC+ + G + + ++ +I + +L+D+ + G L
Sbjct: 321 QTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRL 380
Query: 269 EEALVTFYKTDCK-DVVTWTTMI 290
+AL K K D W +++
Sbjct: 381 SQALDIVEKMPMKPDSKIWGSLL 403
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/414 (35%), Positives = 231/414 (55%), Gaps = 3/414 (0%)
Query: 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEG--IVADKITLVILFSACARLEKLHYGKTVHC 108
++N+++ ++ S + +++ + D T L A+L G +VH
Sbjct: 76 TFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHG 135
Query: 109 YATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168
A K G EY ++++ L+ MYA+ +D R+F + ++V +++ M V
Sbjct: 136 AAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSI-CEPDLVCQTAMVSACAKMGDVG 194
Query: 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS 228
AR++FD++ KD + W +M+ G V+ Q EAL LF M EGV +E MVSVLSACS
Sbjct: 195 FARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACS 254
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
L L GR H +I +N + + TALIDMY+KCG++ +A+ F+ K+V TW++
Sbjct: 255 HLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSS 314
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
I GLA G G + L +F M++ ++PNE TFVSVL C GL+ EG + F M VY
Sbjct: 315 AIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVY 374
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
++P +EH+ C+VDL RAG L +A FI MP ++ ALL+AC Y ++G+
Sbjct: 375 GIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELA 434
Query: 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ +++L ++H AYVLLSN YA W V+ R+ M RK+PG S+I++
Sbjct: 435 SRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEV 488
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 133/309 (43%), Gaps = 37/309 (11%)
Query: 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEV 68
V + + D+ +++ +M AR LFDKM +D +WN ++S Y S E
Sbjct: 168 VFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREA 227
Query: 69 LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
L LF + EG+ +++++V + SAC+ L L G+ H Y + L L + AL+ M
Sbjct: 228 LSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDM 287
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
YAKC M++A+ EVF + +K++ W S
Sbjct: 288 YAKCGNMNKAM--------------------------------EVFWGMKEKNVYTWSSA 315
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NN 247
+ G E+ LELF M + V P+E VSVL CS + ++ GR + +
Sbjct: 316 IGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYG 375
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD-VVTWTTMIEGLA---NYGLGNEAL 303
I ++D+Y + G L+EAL + V W ++ N +G A
Sbjct: 376 IEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELAS 435
Query: 304 RVFYQMERK 312
R ++E K
Sbjct: 436 RKIVELEAK 444
>gi|449516814|ref|XP_004165441.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like isoform 1 [Cucumis sativus]
Length = 703
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/439 (33%), Positives = 242/439 (55%), Gaps = 3/439 (0%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N ++ Y + L AR LF+++P RDV SW ++ + + L+L+ + +
Sbjct: 263 NVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLH 322
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
+++ +V L SAC + + G+ H K G ++ ++ YA C+ +D A
Sbjct: 323 PNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYLQ 382
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
+ +M + ++ S N++I G+ ++D AR++FD + +KD+ W +M+ G + + P+ A
Sbjct: 383 Y-QMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVA 441
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L+LF MID V P+E MVSV SA ++L L GR H ++ I + + A+IDM
Sbjct: 442 LDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAIIDM 501
Query: 262 YSKCGSLEEALVTF--YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
Y+KCGS++ AL F K V W +I GLA +G N +L +F ++R+ IK N
Sbjct: 502 YAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLNSI 561
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
TF+ VL+AC H+GL+ G + F M + V+P I+H+ CLVDLL R G L +AEE ++
Sbjct: 562 TFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAEEIVRT 621
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
MP + + + LL++ T+ E ++G++ A N+ +L VLLSN YA G W +
Sbjct: 622 MPMKADVVIWGTLLASSRTHGEVEIGERAAENLARLQPSHGPGRVLLSNLYADAGLWEDA 681
Query: 440 AEARRNMKELQTRKKPGNS 458
A RR ++ + + PG S
Sbjct: 682 ALVRRAIQSQRMIRSPGYS 700
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 186/398 (46%), Gaps = 63/398 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD------------------- 42
G+ +HA V K +S+ ++ NSLI+ Y + L + AR+LFD
Sbjct: 80 GQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDSVSCNIMMSGYVK 139
Query: 43 ------------KMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
KMP R S+ T++ GE + +FK + G+ +++T+ +
Sbjct: 140 LRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASV 199
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SAC+ + + + +H K+ ++ + LL MY + + RLF+EM RN
Sbjct: 200 MSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEM-PVRN 258
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
VS N+++ GY+ LVD ARE+F+ I ++D+ W M+ G V+ K+ +AL L+ M
Sbjct: 259 TVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRK 318
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC----- 265
+ P+E ++V +LSAC +++ GR H I++N F++ +I Y+ C
Sbjct: 319 SDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDL 378
Query: 266 --------------------------GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
G +++A F KDV +W+TMI G A L
Sbjct: 379 AYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELP 438
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+ AL +F+ M ++PNE T VSV +A G + EG
Sbjct: 439 DVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEG 476
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 105/422 (24%), Positives = 184/422 (43%), Gaps = 71/422 (16%)
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
++++V CA + G+ +H K G + N+L+ MY KC + A LFD
Sbjct: 61 ELSVVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFD 120
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
S + VS NI+++GY+ + ++ AR++F ++ ++ V + +M+ G + EA+E
Sbjct: 121 SC-SVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIE 179
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
+FK M GV P+E M SV+SACS + + R++H +++ + + T L+ MY
Sbjct: 180 VFKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYC 239
Query: 264 -------------------------------KCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
K G +++A F + +DV +W MI+G
Sbjct: 240 VFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDG 299
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ---LFRRMGGVY- 348
+AL ++ M + + PNE V +L+AC S I EG Q L + G V
Sbjct: 300 FVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCF 359
Query: 349 -RVQPTIEHFVCL---VDL----------------------LSRAGLLYQAEEFIKIMPA 382
+Q TI F +DL ++ G++ QA + +MP
Sbjct: 360 DFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPE 419
Query: 383 EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL-------EGH 435
+D F S+ ++S D+ + + M+ + +E ++S F A+ EG
Sbjct: 420 KDVF-SWSTMISGYAQNELPDVALDLFHGMIDSKVEPNE-ITMVSVFSAIAALGKLPEGR 477
Query: 436 WT 437
W
Sbjct: 478 WA 479
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 122/286 (42%), Gaps = 36/286 (12%)
Query: 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY--NDFSDSGEVLILFK 73
S + N +I + + + AR +FD MP +DV SW+T++S Y N+ D L LF
Sbjct: 389 SHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVA--LDLFH 446
Query: 74 QLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
+I + ++IT+V +FSA A L KL G+ H Y + N+ A++ MYAKC
Sbjct: 447 GMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAIIDMYAKCG 506
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
+D AL +F ++ + + VS W +++ G
Sbjct: 507 SIDTALDVFRQIKDKTSTVS------------------------------PWNAIICGLA 536
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDA 252
+LE+F + + + + VLSAC ++ G R Q+ + +
Sbjct: 537 MHGHANLSLEIFSNLQRRSIKLNSITFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNI 596
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYG 297
L+D+ + G L EA K DVV W T++ +G
Sbjct: 597 KHYGCLVDLLGRVGRLREAEEIVRTMPMKADVVIWGTLLASSRTHG 642
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 123/323 (38%), Gaps = 67/323 (20%)
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV-MVSVLSACSSLSNLQYGRLVHRFI 243
W S + +P + L F + D E+ +VS L C+S S + G+ +H +
Sbjct: 28 WVSTFSTIESSPRPLQNLSSFLNGRPSSSSLDCELSVVSALKYCASSSAISSGQQIHAIV 87
Query: 244 LQNNITQDAFVKTALIDMYSKCG-------------------------------SLEEAL 272
L+ + F+ +LI+MY KCG LE A
Sbjct: 88 LKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDSVSCNIMMSGYVKLRQLENAR 147
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F K + V++TTMI GLA EA+ VF M G+ PNE T SV++AC H G
Sbjct: 148 QLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASVMSACSHIG 207
Query: 333 LITEGCQLFRRMG------GVYRVQPTIEHFVCLVDLLS--------------------- 365
I C++ + G+ + + H C+ L
Sbjct: 208 GIWN-CRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVSWNVML 266
Query: 366 ----RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
++GL+ QA E + +P D F S+ ++ + + + M K + H
Sbjct: 267 KGYVKSGLVDQARELFERIPERDVF-SWAIMIDGFVQMKRLRKALLLYSAMRK--SDLHP 323
Query: 422 AYVLLSNFYALEGHWTEVAEARR 444
VL+ + + G + E R+
Sbjct: 324 NEVLIVDLLSACGQSVSIEEGRQ 346
>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 799
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/482 (32%), Positives = 257/482 (53%), Gaps = 35/482 (7%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD--------- 64
+S I V NSLI Y RM AR +FD+M +DV SW L+ +Y++ D
Sbjct: 281 FESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLD 340
Query: 65 ----------------------SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHY 102
+ E + L+ Q++ +G + + SACA LE L
Sbjct: 341 AMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRG 400
Query: 103 GKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY- 161
G +H + K+G + + ++L+ MY KCK+ +A +FD + +NIV N L +GY
Sbjct: 401 GARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTL-PEKNIVCWNSLASGYS 459
Query: 162 IDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMV 221
+ ++V+ A +F ++ +++ W +++ G + +Q +AL F M+ G P E
Sbjct: 460 YNGKMVE-AMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFS 518
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK 281
SVL AC++L +L G++ H ++ + + F+ TAL DMY+K G L+ + FY+ +
Sbjct: 519 SVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPER 578
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
+ VTWT MI+GLA GL E++ +F M G+ PNE TF+++L AC H GL+ + F
Sbjct: 579 NDVTWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYF 638
Query: 342 RRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
+M + + P +H+ C+VD+L+RAG L +AE + P++ + S+ ALLSAC TY
Sbjct: 639 EKM-QAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKN 697
Query: 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
++G++ A + +LG + YVLLSN YA G W + A R MK +K G S +
Sbjct: 698 EEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQ 757
Query: 462 LK 463
++
Sbjct: 758 VR 759
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/438 (24%), Positives = 195/438 (44%), Gaps = 76/438 (17%)
Query: 24 LIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM-------------SIYNDFSDSGEV-- 68
++H + + AR LFD MP R V S+ T++ +Y SG V
Sbjct: 158 MVHEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQ-CPSGSVAF 216
Query: 69 -----------------LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
L +F++++ G+ + IT V + AC + ++ A
Sbjct: 217 FTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAI 276
Query: 112 KVGL-EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLA 170
K E + ++N+L+ +Y + + A ++FDEM +++VS L++ Y + +D A
Sbjct: 277 KSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEM-DVKDVVSWTALLDVYSESGDLDGA 335
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230
R V D + +++ V W +++ + EA++L+ +M+ +G P+ SVLSAC++L
Sbjct: 336 RRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATL 395
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC------------------------- 265
+L+ G +H L+ + + FV ++LIDMY KC
Sbjct: 396 EDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLA 455
Query: 266 ------GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
G + EA+ F K +++ +W T+I G A +ALR F M G P E
Sbjct: 456 SGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEI 515
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEE 375
TF SVL AC + + G +M ++ +E + L D+ +++G L ++
Sbjct: 516 TFSSVLLACANLCSLVTG-----KMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKR 570
Query: 376 FIKIMPAEDKFISYKALL 393
MP E +++ A++
Sbjct: 571 MFYQMP-ERNDVTWTAMI 587
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 139/321 (43%), Gaps = 52/321 (16%)
Query: 12 TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLIL 71
T + +I NSL Y +A LF KMP R++ SWNT++S Y + L
Sbjct: 442 TLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRS 501
Query: 72 FKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK 131
F ++ G V +IT + ACA L L GK H K+G+E + + AL MYAK
Sbjct: 502 FNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAK 561
Query: 132 CKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHG 191
++ + R+F +M R ++ W +M+ G
Sbjct: 562 SGDLQSSKRMFYQMPERNDVT--------------------------------WTAMIQG 589
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI-----LQN 246
+ EE++ LF+ M+ G+TP+E +++L ACS +G LV + I +Q
Sbjct: 590 LAENGLAEESILLFEDMMATGMTPNEHTFLALLFACS------HGGLVEQAIHYFEKMQA 643
Query: 247 -NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYG---LGNE 301
I+ T ++D+ ++ G L EA KT K + +W ++ Y +G
Sbjct: 644 WGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGER 703
Query: 302 ALRVFYQMERKGIKPNEATFV 322
A + +++ K N A +V
Sbjct: 704 AAKRLHELG----KDNTAGYV 720
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/364 (20%), Positives = 146/364 (40%), Gaps = 71/364 (19%)
Query: 98 EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE--MGSRRNIVSLN 155
E+L ++H +A + G+ ++ + LL YA E R F + + + +
Sbjct: 97 ERLPLALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYD 156
Query: 156 ILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL----------- 204
+++ ++ + AR +FD + ++ +V + +M+ +K + EA+EL
Sbjct: 157 FMVHEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAF 216
Query: 205 --------------------FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
F+KM+ GV P+ V ++ AC + +
Sbjct: 217 FTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAI 276
Query: 245 QNNITQDAF-VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG------ 297
++N + + V+ +LI +Y + G A F + D KDVV+WT +++ + G
Sbjct: 277 KSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGAR 336
Query: 298 -----------------------LGN--EALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
GN EA++++ QM G +PN + F SVL+AC
Sbjct: 337 RVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLE 396
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+ G ++ R ++ + FV L+D+ + A+ +P E + +
Sbjct: 397 DLRGGARIHAR---SLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLP-EKNIVCWN 452
Query: 391 ALLS 394
+L S
Sbjct: 453 SLAS 456
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 89/242 (36%), Gaps = 31/242 (12%)
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLS-------------------ACSSLSNLQYGRLVHR 241
AL L + GV D V +L+ A + S Y +VH
Sbjct: 102 ALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDFMVHE 161
Query: 242 FILQNNIT-----------QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
+ +I + T ++D K G + EA+ + + V +T I
Sbjct: 162 HVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATI 221
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
G L + AL VF +M G++PN TFV ++ AC +G +
Sbjct: 222 SGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFF 281
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
+ +IE L+ L R G A + M +D +S+ ALL + D ++V +
Sbjct: 282 ESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKD-VVSWTALLDVYSESGDLDGARRVLD 340
Query: 411 NM 412
M
Sbjct: 341 AM 342
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 90/205 (43%), Gaps = 14/205 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK HA K ++ I++G +L Y + ++ +F +MP R+ +W ++ +
Sbjct: 533 GKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAE 592
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACAR----LEKLHYGKTVHCYATKVGLEY 117
+ E ++LF+ ++ G+ ++ T + L AC+ + +HY + + + ++
Sbjct: 593 NGLAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQAWGISPKEKH 652
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI---NGYIDMELVDLAREVF 174
M + L A+ + EA L + S+ S L+ N Y + E+ + A +
Sbjct: 653 YTCMVDVL----ARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAKRL 708
Query: 175 DEIVDKDI---VLWRSMMHGCVKAK 196
E+ + VL +M C + K
Sbjct: 709 HELGKDNTAGYVLLSNMYASCGRWK 733
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 225/390 (57%), Gaps = 2/390 (0%)
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
++ G + D + + ACARL LH G+ +H K+G+ + ++NAL+ ++ C
Sbjct: 1 MLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGA 60
Query: 135 MDEALRLFDEMGSR-RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
++ A +FD + + R++VS N +I+GY+ +LA +VFD I ++ V W SM+ G
Sbjct: 61 VEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYA 120
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
++ +EA+ELF++M G D + VLSAC L GR +H + +N+I D
Sbjct: 121 QSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLN 180
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER-K 312
+ ALI MYSKCG +++AL F+ D+ +W+ +I GLA G ++AL +F QME
Sbjct: 181 ARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMIS 240
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
I+PNE TF+ VL AC H G + +G F M +Y + P IEH+ C+VDLL RA LL +
Sbjct: 241 DIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVE 300
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432
AE+FI+ +P + + +++LL AC + +L + A + +L + A VLLSN YA
Sbjct: 301 AEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYAS 360
Query: 433 EGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
W +V R++M + +K+PG S +++
Sbjct: 361 ASRWGDVKRVRKDMATQRIKKQPGCSFVEI 390
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 137/333 (41%), Gaps = 70/333 (21%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIY 59
G+ +H+ K + D++V N+LI + AR +FD +P RDV SWN+++S Y
Sbjct: 29 GREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGY 88
Query: 60 ----------------------------NDFSDSG---EVLILFKQLIFEGIVADKITLV 88
++ S E + LF+++ G AD T+
Sbjct: 89 LQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIA 148
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ SAC L G+ +H Y + +E LN NAL+ MY+KC ++ +AL
Sbjct: 149 CVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKAL--------- 199
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
E+F + DI W +++ G + ++AL LF +M
Sbjct: 200 -----------------------EIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQM 236
Query: 209 -IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NNITQDAFVKTALIDMYSKCG 266
+ + P+E + VL AC+ + G + Q N+T ++D+ +
Sbjct: 237 EMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRAN 296
Query: 267 SLEEALVTFYKTDC--KDVVTWTTMIEGLANYG 297
L EA F +T DVV W +++ N+G
Sbjct: 297 LLVEA-EKFIRTLPIQPDVVIWRSLLFACRNHG 328
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 32/211 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + + +++ D+ N+LI Y + A +F + D+ SW+ ++S
Sbjct: 163 GRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAM 222
Query: 62 FSDSGEVLILFKQL-IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+S + L LF Q+ + I ++IT + + AC ++G V GL Y
Sbjct: 223 NGESDKALHLFSQMEMISDIRPNEITFLGVLCAC------NHGGFV-----DKGLYYF-- 269
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
NA+ +Y ++ + D +G R N+ LV+ + + +
Sbjct: 270 --NAMTQIYNLTPGIEHYGCMVDLLG-RANL--------------LVEAEKFIRTLPIQP 312
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
D+V+WRS++ C E A E K I+E
Sbjct: 313 DVVIWRSLLFACRNHGNIELA-EFAAKQIEE 342
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/495 (30%), Positives = 252/495 (50%), Gaps = 63/495 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDA----------------------- 37
+GK H + + ++ +VG+ L+ Y +M+L DA
Sbjct: 158 LGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLL 217
Query: 38 --------RVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
R LF+ M RD +W T+++ + E L +F+++ F+GI D+ T
Sbjct: 218 RCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGS 277
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +AC L L GK +H Y + + + + +AL+ MY+KC+
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRS--------------- 322
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+ LA VF + K+I+ W +++ G + EEA+ +F +M
Sbjct: 323 -----------------IKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQ 365
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+G+ PD+ + SV+S+C++L++L+ G H L + + V AL+ +Y KCGS+E
Sbjct: 366 RDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIE 425
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+A F + D V+WT ++ G A +G E + +F +M KG+KP+ TF+ VL+AC
Sbjct: 426 DAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACS 485
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
+G + +G F M + + P +H+ C++DL SR+G L +AEEFIK MP I +
Sbjct: 486 RAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGW 545
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449
LLSAC + ++GK A N++++ Q+ +YVLL + +A +G W EVA+ RR M++
Sbjct: 546 GTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDR 605
Query: 450 QTRKKPGNSIIDLKH 464
Q +K+PG S I K+
Sbjct: 606 QVKKEPGCSWIKYKN 620
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 118/394 (29%), Positives = 211/394 (53%), Gaps = 8/394 (2%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
+++ N+L+ L +D LF M RD+ S+N +++ ++ + + ++ L+
Sbjct: 71 NLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALL 130
Query: 77 F--EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+ +IT+ + A + L GK HC ++G + + L+ MYAK
Sbjct: 131 QADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSL 190
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+ +A R FDE+ S+ N+V N +I G + ++V+ AR +F+ + D+D + W +M+ G +
Sbjct: 191 VGDAKRAFDEVDSK-NVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQ 249
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
EALE+F++M +G+ D+ S+L+AC +LS L+ G+ +H +I++ + FV
Sbjct: 250 NGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFV 309
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
+AL+DMYSKC S++ A F + CK++++WT +I G G EA+RVF +M+R GI
Sbjct: 310 GSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGI 369
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
P++ T SV+++C + + EG Q F + V + I LV L + G + A
Sbjct: 370 DPDDYTLGSVISSCANLASLEEGAQ-FHCLALVSGLMHYITVSNALVTLYGKCGSIEDAH 428
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
M D+ +S+ AL+S Y++F K+
Sbjct: 429 RLFDEMSFHDQ-VSWTALVSG---YAQFGRAKET 458
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/441 (34%), Positives = 232/441 (52%), Gaps = 33/441 (7%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N LI Y + +AR LFD MP R SWN++++ Y + E L LF Q++ EG
Sbjct: 244 NCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGAS 303
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
+ IT+ +FS CA+ L G+ + + L+ ++ + AL+ MY KC+ +DE
Sbjct: 304 PNAITITTVFSICAKTGDLDTGRRARAWIREEDLQNVI-VHTALMEMYVKCRAIDE---- 358
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
AR FD + +D+V W +M+ G + +P E+
Sbjct: 359 ----------------------------ARHEFDRMPRRDVVAWSTMIAGYSQNGRPHES 390
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
LELF++M P+E +V VLSAC+ L + + G + +I + +++ +ALIDM
Sbjct: 391 LELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDM 450
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y+KCG + A F + + K VVTW +MI GLA G +A+ ++ +M GI+PNE TF
Sbjct: 451 YTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTF 510
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
V++L AC H+GL+ +G F M V P +EH C+VDLL ++G L++A +FI M
Sbjct: 511 VALLTACTHAGLVDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDME 570
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
E + + LLSAC +++ +L K A ++ L + YVLLSN YA G W +V E
Sbjct: 571 VEPNAVIWSTLLSACRAHADVELAKLAAGKLVALEPNNSSIYVLLSNIYADAGLWGDVRE 630
Query: 442 ARRNMKELQTRKKPGNSIIDL 462
R M+ +K S I+L
Sbjct: 631 IRDLMRSKNLQKLSAYSWIEL 651
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 151/299 (50%), Gaps = 2/299 (0%)
Query: 34 FTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSA 93
+ AR LFD +P +S + S E + + L G + ++ +
Sbjct: 124 YRAARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKS 183
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
CA+ G HC+A G+ + ++ AL+ YAK +MD AL F EM ++ +
Sbjct: 184 CAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEM-PVKDPIP 242
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
+N LI GY V+ AR +FD + + W SM+ + EAL LF +M+ EG
Sbjct: 243 MNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGA 302
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
+P+ + +V S C+ +L GR +I + ++ Q+ V TAL++MY KC +++EA
Sbjct: 303 SPNAITITTVFSICAKTGDLDTGRRARAWIREEDL-QNVIVHTALMEMYVKCRAIDEARH 361
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F + +DVV W+TMI G + G +E+L +F +M+ KPNE T V VL+AC G
Sbjct: 362 EFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLG 420
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 4/175 (2%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
AR +FD + L + + G K +E +E+ + G + VL +C+
Sbjct: 127 ARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQ 186
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+ G H L + D FV+TAL+D Y+K G ++ AL+ F + KD + +
Sbjct: 187 SAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCL 246
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
I G + G EA R+F M R+ A++ S++A H G E LF +M
Sbjct: 247 ITGYSKSGDVEEARRLFDSMPRR----TSASWNSMIACYAHGGEFREALTLFDQM 297
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G+ + ++ L Y+G++LI Y + AR +F++M + V +WN+++
Sbjct: 424 LGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLA 483
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSAC 94
N F++ + + L+++++ +GI +++T V L +AC
Sbjct: 484 LNGFAE--DAIALYRKMVGDGIQPNEVTFVALLTAC 517
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/460 (33%), Positives = 242/460 (52%), Gaps = 33/460 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +HAHV D+ + N L++ Y + DA LFD + RD +W+ ++ +
Sbjct: 20 RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
D F++L+ G+ D TL + C L G+ +H K GL +
Sbjct: 80 GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVC 139
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
+L+ MYAKC +++A RLF+ M + KD+
Sbjct: 140 ASLVDMYAKCIVVEDAQRLFERM--------------------------------LSKDL 167
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W ++M G E+L LF +M +EGV PD+ MV+V++AC+ L + R + +
Sbjct: 168 VTW-TVMIGAYADCNAYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDY 226
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
I++N + D + TA+IDMY+KCGS+E A F + K+V++W+ MI +G G +A
Sbjct: 227 IVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDA 286
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
+ +F+ M I PN TFVS+L AC H+GLI EG + F M + V+P ++H+ C+VD
Sbjct: 287 IDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVD 346
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL RAG L +A I+ M E + ALL AC +S+ +L +K AN++++L Q+
Sbjct: 347 LLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGH 406
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA G W +VA+ R M + + +K PG + I++
Sbjct: 407 YVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEV 446
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 136/273 (49%), Gaps = 34/273 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H V K L SD +V SL+ Y + + DA+ LF++M +D+ +W ++ Y
Sbjct: 119 IGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA 178
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D ++ E L+LF ++ EG+V DK+ +V + +ACA+L +H + + Y + G +
Sbjct: 179 D-CNAYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVI 237
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ A++ MYAKC ++ A +FD M +N++S + +I Y
Sbjct: 238 LGTAMIDMYAKCGSVESAREVFDRM-KEKNVISWSAMIAAY------------------- 277
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLV 239
HG + ++A++LF M+ + P+ VS+L ACS ++ G R
Sbjct: 278 -------GYHG-----RGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFF 325
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ ++ + D T ++D+ + G L+EAL
Sbjct: 326 NSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEAL 358
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 252/463 (54%), Gaps = 35/463 (7%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
H+ + K AL SD + +SLI Y R L AR +FD++P RD SWN++++ Y +
Sbjct: 145 HSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCA 204
Query: 66 GEVLILFKQL-IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E + +F+++ +G D+++LV L AC L L G+ V + + G+ + +A
Sbjct: 205 REAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSYIGSA 264
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MYAKC E++ A R+FD M + R++++ N +I+GY + D
Sbjct: 265 LISMYAKCGELESARRIFDGMAA-RDVITWNAVISGYAQNGMAD---------------- 307
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
EA+ LF M ++ VT ++ + +VLSAC+++ L G+ + +
Sbjct: 308 ---------------EAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYAS 352
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
Q D FV TALIDMY+K GSL+ A F K+ +W MI LA +G EAL
Sbjct: 353 QRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALS 412
Query: 305 VFYQM--ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
+F M E G +PN+ TFV +L+AC H+GL+ EG +LF M ++ + P IEH+ C+VD
Sbjct: 413 LFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVD 472
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL+RAG LY+A + I+ MP + ++ ALL AC + D+G++V ++++ +
Sbjct: 473 LLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVMRMILEVDPSNSGN 532
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
Y++ S YA W + A R M++ K PG S I+++++
Sbjct: 533 YIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENH 575
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 195/394 (49%), Gaps = 46/394 (11%)
Query: 10 TKTALDSDIYVGNS-LIHFYGRMALFTDARVLFDKM-PFRDVGSWNTLM-SIYNDFSDSG 66
T+ ++S I+ N+ L+ + F + +LF + P + ++N ++ ++ + +
Sbjct: 45 TQMVVNSSIHTPNNHLLSKAIHLKNFPYSSLLFSHIAPHPNDYAFNIMIRALTTTWHNYP 104
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
L LF +++ + D T F +CA L L + H K+ L + ++L+
Sbjct: 105 LALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLI 164
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
YA+C + A ++FDE+ R+ VS N +I GY
Sbjct: 165 TAYARCGLVASARKVFDEI-PHRDSVSWNSMIAGY------------------------- 198
Query: 187 SMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
KA EA+E+F++M +G PDE +VS+L AC L +L+ GR V F+++
Sbjct: 199 ------AKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVE 252
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
+T ++++ +ALI MY+KCG LE A F +DV+TW +I G A G+ +EA+ +
Sbjct: 253 RGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILL 312
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH--FV--CLV 361
F+ M+ + N+ T +VL+AC G + G Q+ Y Q +H FV L+
Sbjct: 313 FHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDE-----YASQRGFQHDIFVATALI 367
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
D+ +++G L A+ K MP +++ S+ A++SA
Sbjct: 368 DMYAKSGSLDNAQRVFKDMPQKNE-ASWNAMISA 400
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 154/355 (43%), Gaps = 70/355 (19%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + V + + + Y+G++LI Y + AR +FD M RDV +WN ++S Y
Sbjct: 242 LGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYA 301
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E ++LF + + + A+KITL + SACA + L GK + YA++ G ++ +
Sbjct: 302 QNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIF 361
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAK +D A R+F +M ++N S
Sbjct: 362 VATALIDMYAKSGSLDNAQRVFKDM-PQKNEAS--------------------------- 393
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDE--GVTPDEEVMVSVLSACSSLSNLQYGRL 238
W +M+ + +EAL LF+ M DE G P++ V +LSAC
Sbjct: 394 ----WNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSAC----------- 438
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH ++ L DM S L + ++ M++ LA G
Sbjct: 439 VHAGLVDEGYR--------LFDMMSTLFGL-----------VPKIEHYSCMVDLLARAGH 479
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
EA + +M KP++ T ++L ACR + G ++ R + V P+
Sbjct: 480 LYEAWDLIRKMPE---KPDKVTLGALLGACRSKKNVDIGERVMRM---ILEVDPS 528
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 132/301 (43%), Gaps = 49/301 (16%)
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
AL LF +M+ +TPD +C++L++L + H + + + D +LI
Sbjct: 106 ALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLIT 165
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK-GIKPNEA 319
Y++CG + A F + +D V+W +MI G A G EA+ VF +M R+ G +P+E
Sbjct: 166 AYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEM 225
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGG-VYRVQPTIEHFV--CLVDLLSRAGLLYQAEEF 376
+ VS+L AC G + +L R + G V T+ ++ L+ + ++ G L A
Sbjct: 226 SLVSLLGACGELGDL----ELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRI 281
Query: 377 IKIMPAEDKF----------------------------------ISYKALLSACITYSEF 402
M A D I+ A+LSAC T
Sbjct: 282 FDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGAL 341
Query: 403 DLGKKVANNMMKLGNQSHEAYV--LLSNFYALEGHWTEVAEARRNMKEL-QTRKKPGNSI 459
DLGK++ + G Q H+ +V L + YA G + A+R K++ Q + N++
Sbjct: 342 DLGKQIDEYASQRGFQ-HDIFVATALIDMYAKSG---SLDNAQRVFKDMPQKNEASWNAM 397
Query: 460 I 460
I
Sbjct: 398 I 398
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/468 (31%), Positives = 258/468 (55%), Gaps = 9/468 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HAH + +L Y+ ++H A +F ++ ++ N ++ Y
Sbjct: 32 VHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVFSQVREPNLHLHNAMIKAYAQNHR 91
Query: 65 SGEVLILFKQLI----FEGIV---ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ + ++ +++ F I D+ T L AC L L GK VH + + G E
Sbjct: 92 HLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDLGKQVHGHVVRSGCES 151
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
++N+L+ MY + ++ A ++FD M R++VS N +I+ + + + AR VF+ +
Sbjct: 152 NAIVQNSLIEMYTRAGDLVLARKVFDGM-QERDVVSWNTVISAHARLGQMRKARAVFNSM 210
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
DK +V W +++ G A A+E F+ M EG PD+ +V+VL AC+ L L+ GR
Sbjct: 211 PDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGR 270
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
++ + ++ + ++ +V AL++MY+KCG +++AL F KDV++W+TM+ GLA +G
Sbjct: 271 WIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVGGLAAHG 330
Query: 298 LGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
EA+++F +MER+G +KPN TFV +L+AC H+GL+ EG F RM VY ++P +EH
Sbjct: 331 RAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDVYGIEPGVEH 390
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL R+G + + + I MP + ++L+AC ++ + D A ++ L
Sbjct: 391 YGCIVDLLCRSGQIQRTLDLISDMPLPADAKIWGSVLNACRSHGDVDTAVLAAERLVALE 450
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ V+L+N YA W+EVA R+ ++ RK PG S+I++ +
Sbjct: 451 PEDVGNLVMLANVYAAARRWSEVANTRKAIRSRSMRKTPGCSLIEVDN 498
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 120/269 (44%), Gaps = 66/269 (24%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
+GK +H HV ++ +S+ V NSLI Y R AR +FD M RDV SWNT++S
Sbjct: 136 LGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHA 195
Query: 58 ----------IYNDFSD-------------------SGEVLILFKQLIFEGIVADKITLV 88
++N D SG V F+ + EG D +++V
Sbjct: 196 RLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEA-FRLMQMEGFEPDDVSIV 254
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ ACA+L L G+ ++ Y + + + NAL+ MYAKC +D+AL+LF+ M
Sbjct: 255 AVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMA-- 312
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+KD++ W +M+ G + +EA++LF +M
Sbjct: 313 ------------------------------EKDVISWSTMVGGLAAHGRAQEAVQLFTEM 342
Query: 209 IDEG-VTPDEEVMVSVLSACSSLSNLQYG 236
+G V P+ V +LSACS L G
Sbjct: 343 ERQGTVKPNGITFVGLLSACSHAGLLDEG 371
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 162/472 (34%), Positives = 266/472 (56%), Gaps = 12/472 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDAR---VLFDKMPFRDVGSWNTLMS 57
+G +H HV K+ +S+++V N+L+ Y +F DAR +FD+ P RD S+NT+++
Sbjct: 98 LGLQVHTHVFKSGFESNVFVVNALLQVY---FVFGDARNACRVFDESPVRDSVSYNTVIN 154
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+G + +F ++ + D+ T V L SAC+ LE G+ VH + +
Sbjct: 155 GLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACSLLEDRGIGRVVHGLVYRKLGCF 214
Query: 118 MLN--MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
N + NAL+ MYAKC ++ A R+ + + + L++ Y V++AR +FD
Sbjct: 215 GENELLVNALVDMYAKCGCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVARRLFD 274
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
++ ++D+V W +M+ G A +EALELF ++ D G+ PDE V+V+ LSAC+ L L+
Sbjct: 275 QMGERDVVSWTAMISGYCHAGCFQEALELFVELEDLGMEPDEVVVVAALSACARLGALEL 334
Query: 236 GRLVHRFILQNN--ITQDAFVKTALIDMYSKCGSLEEALVTFYKT--DCKDVVTWTTMIE 291
GR +H +++ + A++DMY+KCGS+E AL F KT D K + +++
Sbjct: 335 GRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAALDVFLKTSDDMKTTFLYNSIMS 394
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
GLA++G G A+ +F +M G++P+E T+V++L AC HSGL+ G +LF M Y V
Sbjct: 395 GLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALLCACGHSGLVDHGKRLFESMLSEYGVN 454
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
P +EH+ C+VDLL RAG L +A I+ MP + + ++ALLSAC + +L + +
Sbjct: 455 PQMEHYGCMVDLLGRAGHLNEAYLLIQNMPFKANAVIWRALLSACKVDGDVELARLASQE 514
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++ + N YV+LSN L E A RR + + +K PG S +++
Sbjct: 515 LLAMENDHGARYVMLSNMLTLMDKHDEAASVRRAIDNVGIQKPPGWSHVEMN 566
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 133/517 (25%), Positives = 212/517 (41%), Gaps = 117/517 (22%)
Query: 12 TALDSDIYVGNSLIHFYG--RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVL 69
T D ++ LI F+ + +LF ++P D+ +N ++ ++ L
Sbjct: 4 TGRHHDPFLMTPLISFFAAANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPHNAL 63
Query: 70 ILFKQLIFEG--IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLL 127
L+K+++ I D T L +CA+L G VH + K G E + + NALL
Sbjct: 64 SLYKKMLSSSPPIFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQ 123
Query: 128 MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRS 187
+Y + A R+FDE R+ VS N +ING + R+
Sbjct: 124 VYFVFGDARNACRVFDE-SPVRDSVSYNTVINGLV-----------------------RA 159
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-- 245
GC ++ +F +M V PDE V++LSACS L + GR+VH + +
Sbjct: 160 GRAGC--------SMRIFAEMRGGFVEPDEYTFVALLSACSLLEDRGIGRVVHGLVYRKL 211
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEA------------------LVTFY----------- 276
++ + AL+DMY+KCG LE A LV+ Y
Sbjct: 212 GCFGENELLVNALVDMYAKCGCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVARR 271
Query: 277 ---KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
+ +DVV+WT MI G + G EAL +F ++E G++P+E V+ L+AC G
Sbjct: 272 LFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELEDLGMEPDEVVVVAALSACARLGA 331
Query: 334 ITEGCQLFRRMGGVY-RVQPTIEH---FVC-LVDLLSRAG-------------------L 369
+ +L RR+ Y R H F C +VD+ ++ G
Sbjct: 332 L----ELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAALDVFLKTSDDMKTTF 387
Query: 370 LYQA-----------------EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
LY + E ++++ E ++Y ALL AC D GK++ +M
Sbjct: 388 LYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALLCACGHSGLVDHGKRLFESM 447
Query: 413 M-KLG-NQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
+ + G N E Y + + GH E +NM
Sbjct: 448 LSEYGVNPQMEHYGCMVDLLGRAGHLNEAYLLIQNMP 484
>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
Length = 936
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/460 (32%), Positives = 242/460 (52%), Gaps = 32/460 (6%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H +T+ LD + N+L++ YGR DAR +FD++ ++ SWN+++ IY
Sbjct: 384 IHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCER 443
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ L LF+ + +GI D++ + + AC K VH + GL ++ +
Sbjct: 444 HDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTS 503
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MYAK E+D +A + E+ ++ I
Sbjct: 504 LVNMYAKAGELD--------------------------------VAEVILQEMDEQQITA 531
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +++G + EALE ++K+ E + D+ +SVL+AC+S ++L G+++H +
Sbjct: 532 WNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAV 591
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ + D VK AL +MYSKCGS+E A F + V+W M++ A +G E L+
Sbjct: 592 ECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLK 651
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+ +ME++G+K N TFVSVL++C H+GLI EGCQ F +G ++ EH+ CLVDLL
Sbjct: 652 LIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLL 711
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
RAG L +AE++I MP E +++ +LL AC + D GK A +++L + A V
Sbjct: 712 GRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASV 771
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+LSN Y+ G W A+ RR M + +K PG S I +K+
Sbjct: 772 VLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKN 811
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 127/488 (26%), Positives = 225/488 (46%), Gaps = 79/488 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+ V ++ D++V +L++ Y + TDAR +FD MP R VG+WN+++S Y+
Sbjct: 179 GKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSI 238
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH-------------- 107
SGE +F+++ EG D++T + + AC E L +GK V
Sbjct: 239 SERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFV 298
Query: 108 ----------CYATKVGLEYMLNME-------NALLLMYAKCKEMDEALRLFDEM----- 145
C + + + M+ +A++ +A EALR F M
Sbjct: 299 GTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGI 358
Query: 146 -GSRRNIVSL--------------------------------NILINGYIDMELVDLARE 172
+R +SL N L+N Y E D AR
Sbjct: 359 LPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDART 418
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
VFD++ +++ W SM+ V+ ++ ++AL+LF+ M +G+ PD +++L AC+ S+
Sbjct: 419 VFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSH 478
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
+ +LVH+ + ++ + V+T+L++MY+K G L+ A V + D + + W +I G
Sbjct: 479 GRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLING 538
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
A +G EAL + +++ + I ++ TF+SVL AC S + EG +M V+
Sbjct: 539 YALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEG-----KMIHSNAVEC 593
Query: 353 TIEHFV----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
++ V L ++ S+ G + A MP +S+ +L A + E + K+
Sbjct: 594 GLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSA-VSWNGMLQAYAQHGESEEVLKL 652
Query: 409 ANNMMKLG 416
M + G
Sbjct: 653 IRKMEQEG 660
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 153/315 (48%), Gaps = 41/315 (13%)
Query: 28 YGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87
Y R DA F K+ R+V SWN ++S Y+ + E L LF ++ EG+ + ITL
Sbjct: 2 YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITL 61
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
V + ++C +L G VH + + G + ALL MY KC
Sbjct: 62 VAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGT------------- 108
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMM-----HGCVKAKQPEEAL 202
L+D A+ VF+E+ +K++V W +M+ GC + A+
Sbjct: 109 ------------------LLD-AQSVFEEMAEKNVVTWNAMLGVYSLQGCCW----KLAV 145
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
ELF +M+ EGV + ++VL++ L+ G+ +H + ++ + D FV TAL++ Y
Sbjct: 146 ELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTY 205
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
+KCGSL +A F C+ V TW +MI + EA +F +M+++G + + TF+
Sbjct: 206 TKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFL 265
Query: 323 SVLAACRHSGLITEG 337
S+L AC + + G
Sbjct: 266 SILDACVNPETLQHG 280
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 158/322 (49%), Gaps = 33/322 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + + V +L++ YG+ DA+ +F++M ++V +WN ++ +Y+
Sbjct: 80 VHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGC 139
Query: 65 SGEVLI-LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
++ + LF +++ EG+ A+ IT + + ++ + L GK +H + + +
Sbjct: 140 CWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNT 199
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ Y KC + +A ++FD M R +
Sbjct: 200 ALVNTYTKCGSLTDARKVFDGMPCR--------------------------------SVG 227
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W SM+ +++ EA +F++M EG D +S+L AC + LQ+G+ V I
Sbjct: 228 TWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESI 287
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ + D FV TALI MY++C S E+A F + +++TW+ +I A++G EAL
Sbjct: 288 SETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEAL 347
Query: 304 RVFYQMERKGIKPNEATFVSVL 325
R F M+++GI PN TF+S+L
Sbjct: 348 RYFRMMQQEGILPNRVTFISLL 369
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 7/229 (3%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A F +I +++V W M+ K +EAL LF M+ EGV P+ +V+VL++C S
Sbjct: 11 AVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNSCGS 70
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
L+ G LVH L+ Q+ V TAL++MY KCG+L +A F + K+VVTW M
Sbjct: 71 FRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAM 130
Query: 290 IEGLANYGLGNE-ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
+ + G + A+ +F +M +G+K N TF++VL + + +G + V
Sbjct: 131 LGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIH---SCVR 187
Query: 349 RVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ +++ FV LV+ ++ G L A + MP ++ +++SA
Sbjct: 188 ESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCR-SVGTWNSMISA 235
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 1/160 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H++ + LDSD+ V N+L + Y + +AR +FD MP R SWN ++ Y
Sbjct: 583 GKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQ 642
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYMLN 120
+S EVL L +++ EG+ + IT V + S+C+ + G + H G+E
Sbjct: 643 HGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTE 702
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
L+ + + ++ EA + +M IV+ L+
Sbjct: 703 HYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGA 742
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
MYS+CGSL +A+ F K ++VV+W MI ++Y EAL +F+ M +G+ PN T
Sbjct: 1 MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60
Query: 321 FVSVLAACR-----HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
V+VL +C G++ L R G + Q T+ L+++ + G L A+
Sbjct: 61 LVAVLNSCGSFRELRDGILVHALSLER---GFF--QNTLV-ATALLNMYGKCGTLLDAQS 114
Query: 376 FIKIMPAEDKFISYKALL 393
+ M AE +++ A+L
Sbjct: 115 VFEEM-AEKNVVTWNAML 131
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/467 (33%), Positives = 254/467 (54%), Gaps = 9/467 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIH--FYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K HAH+ T L N L+ + A LFD++P DV +NT++ +
Sbjct: 32 KQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHA 91
Query: 61 --DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
S + I + G + ++ T V +F AC + G+ + +A K+GLE
Sbjct: 92 VIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESN 151
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L + NA++ MYA +DEA R+FD +++ S NI+I GY+ + A+E+FDE+
Sbjct: 152 LFVTNAMIRMYANWGLVDEARRVFD-WSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMS 210
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++D+V W +++ G V+ +EAL+LF +M+ G P+E + S L+AC++L L GR
Sbjct: 211 ERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRW 270
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF---YKTDCKDVVTWTTMIEGLAN 295
+H +I ++ I + + +L+DMY+KCG ++ A F Y K V W MI G A
Sbjct: 271 IHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNAMIGGYAM 329
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
+G EA+ +F QM+ + + PN+ TFV++L AC H L+ EG F+ M Y ++P IE
Sbjct: 330 HGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIE 389
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
H+ C+VDLL R+GLL +AEE + MP + ALL AC + + + G+++ + +L
Sbjct: 390 HYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKEL 449
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ +VLL+N Y+ G W E R+ ++ +K PG S I+L
Sbjct: 450 DSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIEL 496
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 140/323 (43%), Gaps = 65/323 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ + H K L+S+++V N++I Y L +AR +FD +D+ SWN ++ Y
Sbjct: 136 GEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVG 195
Query: 62 FSDSG-------------------------------EVLILFKQLIFEGIVADKITLVIL 90
+ G E L LF +++ G ++ TL
Sbjct: 196 SGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASA 255
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF-DEMGSRR 149
+ACA L L G+ +H Y K ++ + +LL MYAKC E+D A ++F DE G +
Sbjct: 256 LAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKL 315
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+ N +I GY MHG + +EA++LF++M
Sbjct: 316 KVWPWNAMIGGY--------------------------AMHG-----KSKEAIDLFEQMK 344
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSL 268
E V+P++ V++L+ACS ++ GR + + + I + ++D+ + G L
Sbjct: 345 VEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLL 404
Query: 269 EEALVTFYKTD-CKDVVTWTTMI 290
+EA T + D W ++
Sbjct: 405 KEAEETVFNMPMAPDATIWGALL 427
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/467 (33%), Positives = 258/467 (55%), Gaps = 12/467 (2%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARV-----LFDKMPFRDVGSWNTLMS 57
K LHA V L D + ++ F AL + +F ++ + SWNT++
Sbjct: 31 KQLHAVVISCGLSQDDPFISKILCFS---ALSNSGDINYSYRVFSQLSSPTIFSWNTIIR 87
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y++ + + L +F +++ G+ D +T L A ARL G +VH + K G E
Sbjct: 88 GYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGVSVHAHIIKTGHES 147
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
++N+L+ MYA C A ++FD + ++N+VS N +++GY + +A++ F+ +
Sbjct: 148 DRFIQNSLIHMYAACGNSMWAQKVFDSI-QQKNVVSWNSMLDGYAKCGEMVMAQKAFESM 206
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+KD+ W S++ G VKA + EA+ +F+KM G +E MVSV AC+ + L+ GR
Sbjct: 207 SEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTMVSVSCACAHMGALEKGR 266
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK--DVVTWTTMIEGLAN 295
+++++I+ N + ++T+L+DMY+KCG++EEAL+ F + DV+ W +I GLA
Sbjct: 267 MIYKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLAT 326
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
+GL E+L++F +M+ GI P+E T++ +LAAC H GL+ E F + + PT E
Sbjct: 327 HGLVEESLKLFKEMQIVGICPDEVTYLCLLAACAHGGLVKEAWFFFESLSKC-GMTPTSE 385
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
H+ C+VD+L+RAG L A +FI MP E ALLS CI + L + V +++L
Sbjct: 386 HYACMVDVLARAGQLTTAYQFICQMPTEPTASMLGALLSGCINHRNLALAEIVGRKLIEL 445
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+ LSN YA++ W + R M+ +K PG S +++
Sbjct: 446 EPNHDGRYIGLSNMYAVDKRWDDARSMREAMERRGVKKSPGFSFVEI 492
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 138/301 (45%), Gaps = 51/301 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY--------------------------------- 28
G +HAH+ KT +SD ++ NSLIH Y
Sbjct: 133 GVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVVSWNSMLDGYAK 192
Query: 29 -GRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87
G M + A+ F+ M +DV SW++L+ Y + E + +F+++ G A+++T+
Sbjct: 193 CGEMVM---AQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTM 249
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG- 146
V + ACA + L G+ ++ Y GL L ++ +L+ MYAKC ++EAL +F +
Sbjct: 250 VSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEALLIFRRVSK 309
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEI----VDKDIVLWRSMMHGCVKAKQPEEAL 202
S+ +++ N +I G LV+ + ++F E+ + D V + ++ C +EA
Sbjct: 310 SQTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDEVTYLCLLAACAHGGLVKEAW 369
Query: 203 ELFKKMIDEGVTPDEE---VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
F+ + G+TP E MV VL+ L+ ++FI Q A + AL+
Sbjct: 370 FFFESLSKCGMTPTSEHYACMVDVLARAGQLTT------AYQFICQMPTEPTASMLGALL 423
Query: 260 D 260
Sbjct: 424 S 424
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/465 (33%), Positives = 240/465 (51%), Gaps = 40/465 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIH-----FYGRMALFTDARVLFDKMPFRDVGSWNTLMS 57
K + AH+ + L D ++ + LI G +A A +F ++ WNT++
Sbjct: 24 KAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAY---AHRIFSCTHHPNLFMWNTIIR 80
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y+ + L++ + GI + T + AC +L +L G+ +H KVGL++
Sbjct: 81 GYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDF 140
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ N L+ +YA C MD A +F DE+
Sbjct: 141 ETPLVNGLIKLYAACGCMDYACVMF--------------------------------DEM 168
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+ D W +M+ G + Q EAL+LF++M E V+ D + SV+ C L L G+
Sbjct: 169 PEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGK 228
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH ++ + + D + TAL+ MYSKCGSL+ AL F +DV W+TMI G A +G
Sbjct: 229 WVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHG 288
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G +AL++F M+R PN TF SVL+AC HSGL+ +G Q+F M Y++ P I+H+
Sbjct: 289 HGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHY 348
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDL RAG++ A +FI+ MP E + ++ LL AC T+ DLG+ ++ ++KL
Sbjct: 349 GCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDP 408
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
S E YVL+SN YA G W+ V + R MK+ +K+ G S I++
Sbjct: 409 SSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEI 453
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 131/299 (43%), Gaps = 36/299 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH+ + K LD + + N LI Y A V+FD+MP D SW+T++S Y
Sbjct: 126 GQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQ 185
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L LF+++ E + +D TL + C L L GK VH Y K G++ + +
Sbjct: 186 NGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVL 245
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MY+KC +D AL++F M R D
Sbjct: 246 GTALVGMYSKCGSLDNALKVFQGMAER--------------------------------D 273
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVH 240
+ W +M+ G E+AL+LF M P+ SVLSACS ++ G ++
Sbjct: 274 VTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFE 333
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDVVTWTTMIEGLANYG 297
+ IT ++D++ + G + A F +T +VV W T++ +G
Sbjct: 334 TMWTEYKITPQIKHYGCMVDLFCRAGMVGHAH-KFIQTMPIEPNVVLWRTLLGACKTHG 391
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 7/222 (3%)
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL------AREVFD 175
+ +L+ +C + + L+ R N+ L + I+ V L A +F
Sbjct: 7 QGSLVAAIKRCTRVGD-LKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFS 65
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
++ +W +++ G + P A+ L++ M G++P+ VL AC L L
Sbjct: 66 CTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCE 125
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G+ +H I++ + + + LI +Y+ CG ++ A V F + D +W+TM+ G A
Sbjct: 126 GQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQ 185
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
G EAL++F +M+ + + + T SV+ C G + G
Sbjct: 186 NGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLG 227
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 79/184 (42%), Gaps = 5/184 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H+++ K + D+ +G +L+ Y + +A +F M RDV +W+T+++ Y
Sbjct: 226 LGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYA 285
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR---LEKLHYGKTVHCYATKVGLEY 117
+ L LF + + + +T + SAC+ +EK H + T+ +
Sbjct: 286 IHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGH--QIFETMWTEYKITP 343
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ ++ ++ + + A + M N+V L+ DL + +I
Sbjct: 344 QIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKI 403
Query: 178 VDKD 181
+ D
Sbjct: 404 LKLD 407
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 217/357 (60%)
Query: 106 VHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME 165
+H + G + +L+ Y C + A R+FDE + ++VS N++I+GY+
Sbjct: 97 LHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKSG 156
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS 225
+ ARE+FD + +++V W ++ + KQPEEA+E+F++M EG+ PD ++SVLS
Sbjct: 157 DLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLS 216
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
AC L + G VHRF+L+ + Q+ + A+IDMY KCGS+++AL F + K +VT
Sbjct: 217 ACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVT 276
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
WTTMI G A +GLG EA+ +F +ME++ + PN+ TF++VL+ C H GL G F+ M
Sbjct: 277 WTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMV 336
Query: 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
Y+++P +EH+ C++DLL RAG L +A I+ MP + + ALL+A T+ + +LG
Sbjct: 337 SQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELG 396
Query: 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ ++++L + Y+LLSN YA + W V E R +M++ R PG S ID+
Sbjct: 397 EQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSIDV 453
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 133/305 (43%), Gaps = 37/305 (12%)
Query: 11 KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLI 70
+TA +D+ N +I Y + AR LFD MP R+V SW ++ Y E +
Sbjct: 135 ETAASADVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIE 194
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
+F+++ EGI D + L+ + SAC L + G+ VH + + GL + + NA++ MY
Sbjct: 195 VFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYV 254
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
KC + +AL +F+ M K IV W +M+
Sbjct: 255 KCGSVKKALEVFEGME--------------------------------QKSIVTWTTMIA 282
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR-FILQNNIT 249
G EA+ELF++M E V+P++ ++VLS CS + GR + + Q I
Sbjct: 283 GFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIK 342
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYG---LGNEALRV 305
+ID+ + G L EA K + W ++ +G LG +AL
Sbjct: 343 PRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALLH 402
Query: 306 FYQME 310
++E
Sbjct: 403 LIELE 407
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/458 (33%), Positives = 249/458 (54%), Gaps = 8/458 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIYND 61
+HAH + L + L HF A F A LF + ++ +N+++ ++
Sbjct: 28 IHAHFLRHGLHQSNQI---LAHFISVCASFNRIAYADRLFSQSHNPNIFLFNSIIKAHSL 84
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L+LF + IV D+ T L +CA L + G+ V + G ++
Sbjct: 85 SVPFHQSLLLFSSMKNHRIVPDQYTFAPLLKSCANLCEYSLGQCVISEVFRRGFYCFGSI 144
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
++ +Y C++M++A ++FDEM S R++V N++I G+ VD +F ++ ++
Sbjct: 145 RIGVVELYVCCEKMEDAWKMFDEM-SHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERS 203
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ + ++ EALELF++M + G PDE +V++L CS L L+ G+ +H
Sbjct: 204 LVSWNTIISCLAQNRRDVEALELFQQMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRIHS 263
Query: 242 FIL-QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + N+ V +LID Y KCG++E+A F K CK VV+W T+I G A G G
Sbjct: 264 YASSKGNLVGITTVGNSLIDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFALNGKGE 323
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ +F +M ++ +KPN+ATFV+VL AC HSGL+ +G +LF M Y +QP +EHF C+
Sbjct: 324 FAIDLFMEMRKEYLKPNDATFVAVLTACVHSGLLEKGRELFSSMAEDYEIQPKLEHFGCM 383
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL R G + +A + IK MP + + A+L AC T+ L + ++ L +
Sbjct: 384 VDLLGRGGCVEEAHKLIKSMPMQPNATLWGAVLGACRTHGNLKLAEMAVKELISLEPWNS 443
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNS 458
YVLLSN A EG W EV R+ M+E +K PG S
Sbjct: 444 GNYVLLSNMLAEEGRWEEVENVRQWMREKSVKKAPGQS 481
>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
Length = 614
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 254/462 (54%), Gaps = 7/462 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + KT + SD+++ N LI Y + AR +FD+MP RD S+N+++ Y
Sbjct: 141 GMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYIK 200
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
LI + +F+ + + L+ S + + G + E L
Sbjct: 201 CG-----LIESARELFDLMPREMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLIS 255
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ Y K M++A LF M RR++V+ +I+GY + V A+ +FD++ +D
Sbjct: 256 WNSLIYGYVKHGRMEDAKDLFHVM-PRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRD 314
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V + SMM G V+ + EALE+F M E +TPDE +V VLSA + L L +H
Sbjct: 315 VVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDMH 374
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I++ + ALIDMYSKCGS+++A+ F + K + W MI GLA +GLG
Sbjct: 375 LYIVEKQFYLGGKLGVALIDMYSKCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLGE 434
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A + ++ER+ I+P+ TFV VL AC HSGL+ EG F M ++++P ++H+ C+
Sbjct: 435 SAFNILLEIERRSIEPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 494
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLLSR G + A+ I+ MP E + ++ L+AC + EF++G+ VA +++ +
Sbjct: 495 VDLLSRCGSIELAKNLIEEMPIEPNDVIWRTFLTACNHHKEFEIGELVAKHLILQAGYNP 554
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+YVLLSN YA G W +V R MKE + +K PG S I+L
Sbjct: 555 SSYVLLSNMYASFGRWKDVRNVRTMMKERKLQKVPGCSWIEL 596
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 168/340 (49%), Gaps = 32/340 (9%)
Query: 47 RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV 106
+D WN ++ ++ D L+ F ++ GI DK + ++ AC+RL L G +
Sbjct: 85 KDPFLWNLVIKSHSHGVDPRRALLWFCLMLENGISVDKFSFSLVLKACSRLGFLKGGMQI 144
Query: 107 HCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMEL 166
H + K G+ L ++N L+ +Y KC + A ++FD M +R+ VS N +I+GYI L
Sbjct: 145 HGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRM-PQRDSVSYNSMIDGYIKCGL 203
Query: 167 VDLAREVFDEIVD--KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
++ ARE+FD + K+++ W SM+ G Q + + + K+ E P+++++
Sbjct: 204 IESARELFDLMPREMKNLISWNSMISG---YAQTSDGVNIASKLFAE--MPEKDLI---- 254
Query: 225 SACSSLSNLQYGRLVH------RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
S ++L YG + H + + +D +ID Y+K G + +A F +
Sbjct: 255 ----SWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQM 310
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEG 337
+DVV + +M+ G EAL +F ME++ + P+E T V VL+A G +++
Sbjct: 311 PHRDVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKA 370
Query: 338 CQLFRRMGGVYRVQPTI----EHFVCLVDLLSRAGLLYQA 373
+ +Y V+ + V L+D+ S+ G + QA
Sbjct: 371 MDMH-----LYIVEKQFYLGGKLGVALIDMYSKCGSIQQA 405
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 166 LVDLAREVFDEIVD--------KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217
L + AR VF E KD LW ++ P AL F M++ G++ D+
Sbjct: 63 LAEFARYVFREYHVCSFAPGDVKDPFLWNLVIKSHSHGVDPRRALLWFCLMLENGISVDK 122
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
VL ACS L L+ G +H F+ + I D F++ LI +Y KCG L A F +
Sbjct: 123 FSFSLVLKACSRLGFLKGGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDR 182
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
+D V++ +MI+G GL A +F M R+
Sbjct: 183 MPQRDSVSYNSMIDGYIKCGLIESARELFDLMPRE 217
>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
Length = 611
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/467 (31%), Positives = 245/467 (52%), Gaps = 38/467 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + + L ++ VG ++I YG+ DAR F+++ +++ +WN +M+ Y
Sbjct: 50 GREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKL 109
Query: 62 FSDSGEVLILFKQLIFEGIVA--DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L LF+++ A DK + I AC+ LE L G+ +H + G E
Sbjct: 110 DGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHK 169
Query: 120 NM--ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
++ ALL MY+KC +++EA R+VFD I
Sbjct: 170 DVVVGTALLNMYSKCGDLEEA--------------------------------RKVFDSI 197
Query: 178 V-DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQY 235
D D V W +M+ + + ++AL+L++ M D + P + V+V+ C+ LS L+
Sbjct: 198 RHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQ 257
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
GR +H + N + V AL+ MY KCG L+EAL F+ KD ++W T+I A
Sbjct: 258 GRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAY 317
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
+G ++AL ++ +M+ +G+KP E TFV +L+AC H GL+ +G F RM +R++P++
Sbjct: 318 HGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVP 377
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
HF C++DLL R G L +AE +K MP + + + +LL AC T+ + G + A+ ++
Sbjct: 378 HFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDR 437
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ YVLLSN YA G W +V + R+ M +K PG S I++
Sbjct: 438 VPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEI 484
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 106/216 (49%), Gaps = 12/216 (5%)
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSN--LQYGRLVHRFILQNNITQDAFVKTA 257
EAL F++M G PD +L+A + + + GR +HR+ + + + V TA
Sbjct: 12 EALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTA 71
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM-ER-KGIK 315
+I MY KCG L++A F + K+ VTW M+ G EAL +F +M ER + +
Sbjct: 72 VISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSAR 131
Query: 316 PNEATFVSVLAACRHSGLITEG---CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
P++ +F + AC + + +G ++ RR G + + L+++ S+ G L +
Sbjct: 132 PDKFSFSIAIEACSNLEDLEQGREIHEMLRREG--KELHKDVVVGTALLNMYSKCGDLEE 189
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
A + + + + + A+++A Y++ GK+
Sbjct: 190 ARKVFDSIRHDADSVCWNAMIAA---YAQHGRGKQA 222
>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
Length = 834
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/451 (31%), Positives = 241/451 (53%), Gaps = 40/451 (8%)
Query: 13 ALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILF 72
D D+ V N+++ YG+ +A ++F +M RD SWNT+++ + ++
Sbjct: 361 GFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNTIIAALEQNECYEDTIVHL 420
Query: 73 KQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKC 132
+++ G+ AD T + ACA L+ L YG VH A K GL + + ++ MY KC
Sbjct: 421 NEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKC 480
Query: 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC 192
+ EAL+L D +G +++V W S++ G
Sbjct: 481 GMITEALKLHDRIGG--------------------------------QELVSWNSIIAGF 508
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252
KQ EEA + F +M+D GV PD +VL +C++L+ ++ G+ +H I++ + D
Sbjct: 509 SLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEMLGDE 568
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
F+ + L+DMY+KCG++ ++ + F K D V+W MI G A +G G EAL +F + ++
Sbjct: 569 FISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAMICGYALHGQGFEALEMFERTQKA 628
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
+ PN ATFV+VL AC H GL+ +GC+ F M Y+++P +EHF C+ +
Sbjct: 629 NVAPNHATFVAVLRACSHVGLLDDGCRYFHLMTSRYKLEPQLEHFACMGP--------QE 680
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432
A +FI+ MP E + +K LLS C + ++ + A+N+++L Y+LLSN YA
Sbjct: 681 ALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYILLSNVYAE 740
Query: 433 EGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
G W +V+ RR M++ + +K+PG S I+++
Sbjct: 741 SGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQ 771
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 126/536 (23%), Positives = 204/536 (38%), Gaps = 147/536 (27%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ HA + + ++V N L+ Y R A +FD MP RD SWNT+++ Y
Sbjct: 50 GQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVFDTMPHRDTVSWNTMLTAYAH 109
Query: 62 FSDSGEVLIL------------------------FKQLIFE-------GIVADKITLVIL 90
D+G L F+ L+ G+ D+ TL +L
Sbjct: 110 MGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVL 169
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
AC L+ L G +H A K GLE + +AL+ MY KC+ +++AL F MG RN
Sbjct: 170 LKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMG-ERN 228
Query: 151 IVSLNILINGYIDME------------------------------------------LVD 168
VS +I G + E +VD
Sbjct: 229 SVSWGAVIAGCVQNEQYMRGLELLCRCKAITCLSTARQLHAHAIKNKFSSDRVVGTAIVD 288
Query: 169 L---------AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
+ AR F + + + +MM G V+ EA++LF+ M G+
Sbjct: 289 VYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGIGFGVVS 348
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279
+ V SAC+ + D V+ A++D+Y KC +L EA + F + +
Sbjct: 349 LSGVFSACAEVKGFDV---------------DVCVRNAILDLYGKCKALVEAYLVFQEME 393
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR---------- 329
+D V+W T+I L + + +M R G++ ++ T+ SVL AC
Sbjct: 394 QRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLV 453
Query: 330 -------------------------HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
G+ITE +L R+GG + V ++
Sbjct: 454 VHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGG--------QELVSWNSII 505
Query: 365 SRAGLLYQAEEFIKI------MPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+ L Q+EE K M + +Y +L +C + +LGK++ ++K
Sbjct: 506 AGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIK 561
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 182/393 (46%), Gaps = 53/393 (13%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ LHAH K SD VG +++ Y + DAR F +P V + N +M
Sbjct: 265 RQLHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRT 324
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
E + LF+ + GI ++L +FSACA ++ G + + +
Sbjct: 325 GLGAEAMQLFQFMTRSGIGFGVVSLSGVFSACAEVK---------------GFDVDVCVR 369
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
NA+L +Y KCK + EA +F EM R D
Sbjct: 370 NAILDLYGKCKALVEAYLVFQEMEQR--------------------------------DS 397
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +++ + + E+ + +M+ G+ D+ SVL AC+ L +L+YG +VH
Sbjct: 398 VSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGK 457
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+++ + DAFV + ++DMY KCG + EAL + +++V+W ++I G + EA
Sbjct: 458 AIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGGQELVSWNSIIAGFSLNKQSEEA 517
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC--L 360
+ F +M G+KP+ T+ +VL +C + I G Q+ G + + + + F+ L
Sbjct: 518 QKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIH---GQIIKQEMLGDEFISSTL 574
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
VD+ ++ G + ++ + + D F+S+ A++
Sbjct: 575 VDMYAKCGNMPDSQLMFEKVQKLD-FVSWNAMI 606
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 1/205 (0%)
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
V A A L G+ H G + + N LL MYA+C A +FD M
Sbjct: 35 VYQLCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVFDTM-P 93
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
R+ VS N ++ Y M +A + + D D+V W +++ G + + + L +
Sbjct: 94 HRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGLSIE 153
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M GV PD + +L AC L +L G +H ++ + D +AL+DMY KC S
Sbjct: 154 MARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGKCRS 213
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEG 292
LE+AL F+ ++ V+W +I G
Sbjct: 214 LEDALHFFHGMGERNSVSWGAVIAG 238
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 110/235 (46%), Gaps = 38/235 (16%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H K+ L D +V ++++ Y + + T+A L D++ +++ SWN++++ ++
Sbjct: 454 VHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGGQELVSWNSIIAGFSLNKQ 513
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK---VGLEYMLNM 121
S E F +++ G+ D T + +CA L + GK +H K +G E+ +
Sbjct: 514 SEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEMLGDEF---I 570
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ L+ MYAKC M ++ +F+++ + + VS N +I GY
Sbjct: 571 SSTLVDMYAKCGNMPDSQLMFEKV-QKLDFVSWNAMICGYA------------------- 610
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+HG Q EALE+F++ V P+ V+VL ACS + L G
Sbjct: 611 -------LHG-----QGFEALEMFERTQKANVAPNHATFVAVLRACSHVGLLDDG 653
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 89/251 (35%), Gaps = 42/251 (16%)
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
RS+ GC P +A L V L A + S L G+ H +L
Sbjct: 9 RSLSPGCPGRPTPAQAAFLATATFSH---------VYQLCASAGHSALATGQAAHARMLV 59
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM---------------- 289
+ FV L+ MY++CG A F +D V+W TM
Sbjct: 60 SGFVPTMFVSNCLLQMYARCGGAAHAHGVFDTMPHRDTVSWNTMLTAYAHMGDTGMATSL 119
Query: 290 ---------------IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
+ G G+ + + + +M R G+ P+ T +L AC +
Sbjct: 120 LCVMPDPDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDL 179
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
G Q+ + ++ + LVD+ + L A F M E +S+ A+++
Sbjct: 180 ALGVQI-HALAVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGM-GERNSVSWGAVIA 237
Query: 395 ACITYSEFDLG 405
C+ ++ G
Sbjct: 238 GCVQNEQYMRG 248
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K + D ++ ++L+ Y + D++++F+K+ D SWN ++ Y
Sbjct: 551 LGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAMICGYA 610
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
E L +F++ + + T V + AC+ + L G + H ++ LE L
Sbjct: 611 LHGQGFEALEMFERTQKANVAPNHATFVAVLRACSHVGLLDDGCRYFHLMTSRYKLEPQL 670
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
+ C EAL+ M + V L++
Sbjct: 671 E--------HFACMGPQEALKFIRSMPLEADAVIWKTLLS 702
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 163/467 (34%), Positives = 241/467 (51%), Gaps = 12/467 (2%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + ++D D V L Y A L + P + + + ++
Sbjct: 43 IHAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGL 102
Query: 65 SGEVLILFKQLIFE--GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
L L +++ G++ TL AC L G+ +H YA K+ L +
Sbjct: 103 HRAALALLSEMLLSRHGLLPTAHTLSASLPACGCLA---VGRALHGYAVKLALSGEPYVA 159
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
ALL MYA+ E A LFD M ++VS+ +++ Y M +D AR +FD + KD+
Sbjct: 160 TALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDL 219
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +MM G + +P EAL LF++M+ GV PDE +V LSA + L + GR +H F
Sbjct: 220 VCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSF 279
Query: 243 ILQNN----ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMIEGLAN 295
+ + +A V TAL+DMY KCGSLEEA+ F +DVV W MI G A
Sbjct: 280 VANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAM 339
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
+G EAL F Q+ +G+ P + TF+ VL AC HSGL+ EG LF M Y + P +E
Sbjct: 340 HGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVE 399
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
H+ C+VDLL RAG + +A + ++ M A+ + +LL AC + LG++VA+ ++
Sbjct: 400 HYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGN 459
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
G + YVLLSN YA G W EV R M+ +K+PG S +++
Sbjct: 460 GLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEV 506
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 138/330 (41%), Gaps = 71/330 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHF--------------------------------Y 28
+G+ LH + K AL + YV +L+ Y
Sbjct: 139 VGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCY 198
Query: 29 GRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLV 88
+M DAR LFD +P +D+ WN +M Y E L LF+Q++ G+ D++++V
Sbjct: 199 AKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVV 258
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNME----NALLLMYAKCKEMDEALRLFDE 144
+ SA A+L G+ +H + G + + AL+ MY KC ++EA+ +F +
Sbjct: 259 LALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRD 318
Query: 145 M--GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
+ G R++V+ N +INGY MHG + EAL
Sbjct: 319 LGGGGDRDVVAWNAMINGY--------------------------AMHG-----RSREAL 347
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDM 261
E F ++ +G+ P + + VL+ACS + GR + + + I ++D+
Sbjct: 348 EAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDL 407
Query: 262 YSKCGSLEEALVTFYKTDCK-DVVTWTTMI 290
+ G +EEA K D W +++
Sbjct: 408 LGRAGRVEEAFDLVQSMKAKPDAAMWASLL 437
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 172/501 (34%), Positives = 257/501 (51%), Gaps = 45/501 (8%)
Query: 3 KGLHAHVTKTALDSDIY----VGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
K LH +K +D D++ +G L+ Y R +FD++P ++V +N ++
Sbjct: 1044 KKLH---SKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRS 1100
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y + + L++FK + GI D T + A + E L G +H +VGL+
Sbjct: 1101 YVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLN 1160
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI-----NGYID--------ME 165
+ + N L+ MY KC + EA R+ DZM R ++VS N L+ NG D ME
Sbjct: 1161 VFVGNGLISMYGKCGCLVEACRVLDZMPCR-DVVSWNSLVAGCARNGQFDDALEVCKEME 1219
Query: 166 L------------------------VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
L V +E+F ++ +K +V W M+ + P EA
Sbjct: 1220 LLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEA 1279
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
+++F +M D V PD + SVL AC LS L GR +H ++++ + + ++ ALIDM
Sbjct: 1280 VDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDM 1339
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y+KCG LE A F + +DVV+WT+MI G G +A+ +F +M+ G+ P+ F
Sbjct: 1340 YAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAF 1399
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
VSVL+AC H+GL+ EG F+ M ++ P IEHFVC+VDLL RAG + +A FIK MP
Sbjct: 1400 VSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMP 1459
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
E + ALLSAC YS +G A+ + +L + YVLLSN YA G W +V
Sbjct: 1460 MEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTT 1519
Query: 442 ARRNMKELQTRKKPGNSIIDL 462
R MK +K PG S +L
Sbjct: 1520 VRSIMKTKGIKKMPGVSNFEL 1540
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 156/368 (42%), Gaps = 75/368 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +HA V + LD +++VGN LI YG+ +A + D+MP RDV SWN+L++
Sbjct: 1144 VGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCA 1203
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR--LEKLHYGKTVHCYATKVGL--- 115
+ L + K++ G+ D T+ L A L+ + + K + L
Sbjct: 1204 RNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSW 1263
Query: 116 -----------------EYMLNMEN--------ALLLMYAKCKEMDEAL---RLFDEMGS 147
+ L ME+ ++ + C ++ L R+ + +
Sbjct: 1264 NVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVR 1323
Query: 148 RR---NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
+R N++ N LI+ Y ++ AREVFD++ +D+V W SM+ + +A+ L
Sbjct: 1324 KRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSL 1383
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
F +M D G+ PD VSVLSACS L GR + + +
Sbjct: 1384 FSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTE------------------- 1424
Query: 265 CGSLEEALVTFYKTDCKDVVT---WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
+CK V + M++ L G +EA QM ++PNE +
Sbjct: 1425 --------------ECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMP---MEPNERVW 1467
Query: 322 VSVLAACR 329
++L+ACR
Sbjct: 1468 GALLSACR 1475
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/494 (31%), Positives = 258/494 (52%), Gaps = 65/494 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY---GRM-------------------ALFT---- 35
G+ +H HV K D D+YV SLI Y GR+ AL T
Sbjct: 107 GQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYAS 166
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
A+ +FD++P +DV SWN ++S Y + ++ E L LFK+++ + D+ T+V +
Sbjct: 167 KGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSV 226
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+ + G+ VH + D+ G N
Sbjct: 227 VSACAQSASIELGRQVHSW--------------------------------IDDHGFGSN 254
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+ +N LI+ YI V+ A +F+ + KD++ W +++ G +EAL LF++M+
Sbjct: 255 LKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 314
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ--NNITQDAFVKTALIDMYSKCGSL 268
G +P++ M+S+L AC+ L ++ GR +H +I + + + +T+LIDMY+KCG +
Sbjct: 315 SGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDI 374
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E A F + + +W MI G A +G N A +F +M + I+P++ TFV +L+AC
Sbjct: 375 EAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSAC 434
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
HSG++ G +FR M Y++ P +EH+ C++DLL +GL +AEE I M E +
Sbjct: 435 SHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVI 494
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+ +LL AC + +LG+ A N++K+ ++ +YVLLSN YA G W EVA+ R + +
Sbjct: 495 WCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLND 554
Query: 449 LQTRKKPGNSIIDL 462
+K PG S I++
Sbjct: 555 KGMKKVPGCSSIEI 568
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 202/378 (53%), Gaps = 11/378 (2%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIYND 61
+HA + KT L + Y + LI F F A +F+ + ++ WNT+ +
Sbjct: 6 IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 65
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
SD L L+ +I G++ + T L +CA+ + G+ +H + K+G + L +
Sbjct: 66 SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYV 125
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MY + +++A ++FD+ S R++VS LI GY + A+++FDEI KD
Sbjct: 126 HTSLISMYVQNGRLEDARKVFDQ-SSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKD 184
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ G + +EALELFK+M+ V PDE MVSV+SAC+ ++++ GR VH
Sbjct: 185 VVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHS 244
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I + + + ALID+Y KCG +E A F KDV++W T+I G + L E
Sbjct: 245 WIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKE 304
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG----CQLFRRMGGVYRVQPTIEHF 357
AL +F +M R G PN+ T +S+L AC H G I G + +R+ GV H
Sbjct: 305 ALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANAS---SHR 361
Query: 358 VCLVDLLSRAGLLYQAEE 375
L+D+ ++ G + A++
Sbjct: 362 TSLIDMYAKCGDIEAAQQ 379
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 147/327 (44%), Gaps = 39/327 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ + S++ + N+LI Y + A LF+ + ++DV SWNTL+ Y
Sbjct: 238 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYT 297
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYM 118
+ E L+LF++++ G + +T++ + ACA L + G+ +H Y K G+
Sbjct: 298 HMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANA 357
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ +L+ MYAKC +++ A ++F D I+
Sbjct: 358 SSHRTSLIDMYAKCGDIEAAQQVF--------------------------------DSIL 385
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++ + W +M+ G + A ++F +M + PD+ V +LSACS L GR
Sbjct: 386 NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRH 445
Query: 239 VHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANY 296
+ R + ++ IT +ID+ G +EA + + D V W ++++ +
Sbjct: 446 IFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMH 505
Query: 297 GLGNEALRVFYQMERKGIKP-NEATFV 322
GN L Y I+P N ++V
Sbjct: 506 --GNVELGESYAQNLIKIEPKNPGSYV 530
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 156/495 (31%), Positives = 257/495 (51%), Gaps = 63/495 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM---- 56
+G+ +H HV K S ++VG+ L+ Y +M + + AR +FD++P ++V +NTL+
Sbjct: 161 LGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLM 220
Query: 57 ------------------------SIYNDFSDSG---EVLILFKQLIFEGIVADKITLVI 89
S+ F+ +G + + +F+++ E + D+ T
Sbjct: 221 RCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGS 280
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +AC + L GK VH Y + + + + +AL+ MY KCK
Sbjct: 281 VLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCK---------------- 324
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
NI S A VF ++ K++V W +M+ G + EEA++ F M
Sbjct: 325 NIKS----------------AEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQ 368
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
G+ PD+ + SV+S+C++L++L+ G H L + + V AL+ +Y KCGS+E
Sbjct: 369 KYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIE 428
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
++ F + KD VTWT ++ G A +G NE + +F M G+KP++ TF+ VL+AC
Sbjct: 429 DSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACS 488
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
+GL+ +G Q+F M + + P +H+ C++DL SRAG + +A FI MP IS+
Sbjct: 489 RAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISW 548
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449
LLS+C Y D+GK A +M+L + +YVLLS+ YA +G W EVA R++M++
Sbjct: 549 ATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDK 608
Query: 450 QTRKKPGNSIIDLKH 464
RK+PG S I K+
Sbjct: 609 GLRKEPGCSWIKYKN 623
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 193/375 (51%), Gaps = 34/375 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LH+H+ KT + ++ N+LI Y ++ A +FD+MP ++ SWNT++S Y+
Sbjct: 28 AKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSK 87
Query: 62 FSDSGEVLILFKQ--------------------LIFEGIVA-------------DKITLV 88
E+ LF LI++ + A ++IT
Sbjct: 88 LGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFS 147
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
L ++ + G+ +H + K G + + + L+ MY+K + A ++FDE+
Sbjct: 148 TLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDEL-PE 206
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+N+V N LI G + V+ ++ +F E+ ++D + W SM+ G + +A+++F++M
Sbjct: 207 KNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREM 266
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
E + D+ SVL+AC + LQ G+ VH +I++ + + FV +AL+DMY KC ++
Sbjct: 267 KLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNI 326
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
+ A F K CK+VV+WT M+ G G EA++ F M++ GI+P++ T SV+++C
Sbjct: 327 KSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSC 386
Query: 329 RHSGLITEGCQLFRR 343
+ + EG Q R
Sbjct: 387 ANLASLEEGAQFHAR 401
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK 281
++L C N + +H I++ + F+ LI Y+K GS+ A F +
Sbjct: 14 ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHP 73
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQL 340
++ +W T++ + G +E +F M R+ G+ N + +S A C GLI + +
Sbjct: 74 NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWN--SLISGYAGC---GLIYQSVKA 128
Query: 341 FRRM 344
+ M
Sbjct: 129 YNLM 132
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 246/464 (53%), Gaps = 33/464 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ K + N+L+ Y + A+ +F +M R V S+ ++++ Y
Sbjct: 163 LGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYA 222
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+GE + LF+++ EGI D T+ + + CAR L GK VH + + L + +
Sbjct: 223 REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIF 282
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC M EA +F EM ++I+S N +I GY
Sbjct: 283 VSNALMDMYAKCGSMQEAELVFSEM-RVKDIISWNTIIGGY------------------- 322
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLV 239
K EAL LF +++E +PDE + VL AC+SLS GR +
Sbjct: 323 ------------SKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREI 370
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I++N D V +L+DMY+KCG+L A + F KD+V+WT MI G +G G
Sbjct: 371 HGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFG 430
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA+ +F QM + GI+ +E +FVS+L AC HSGL+ EG + F M +++PT+EH+ C
Sbjct: 431 KEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYAC 490
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VD+L+R G L +A FI+ MP + ALL C + + L +KVA + +L ++
Sbjct: 491 IVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPEN 550
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVL++N YA W +V R+ + + RK PG S I++K
Sbjct: 551 TGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIK 594
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 134/428 (31%), Positives = 212/428 (49%), Gaps = 49/428 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ LH + K+ VGNSL+ FY + AR +FD+M RDV SWN++++ Y
Sbjct: 63 GEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 122
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N ++ G L +F Q++ GI D T+V +F+ CA + G+ VH K
Sbjct: 123 NGLAEKG--LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N LL MY+KC ++D A +F EM S R++VS +I GY ARE
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREM-SDRSVVSYTSMIAGY--------AREGL----- 226
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
EA++LF++M +EG++PD + +VL+ C+ L G+ V
Sbjct: 227 ------------------AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 268
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I +N++ D FV AL+DMY+KCGS++EA + F + KD+++W T+I G +
Sbjct: 269 HEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYA 328
Query: 300 NEALRVF-YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
NEAL +F +E K P+E T VL AC +G ++ G + R + V
Sbjct: 329 NEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIH---GYIMRNGYFSDRHV 385
Query: 359 C--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA---NNMM 413
LVD+ ++ G L A + ++D +S+ +++ Y GK+ N M
Sbjct: 386 ANSLVDMYAKCGALLLAHMLFDDIASKD-LVSWTVMIAG---YGMHGFGKEAIALFNQMR 441
Query: 414 KLGNQSHE 421
+ G ++ E
Sbjct: 442 QAGIEADE 449
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 172/360 (47%), Gaps = 44/360 (12%)
Query: 41 FDKMPFRDVGSWNTLMSIYNDFSDSGEV---LILFKQLIFEGIVADKITLVILFSACARL 97
FD++ WN LM N+ + SG+ + LFK+++ G+ D T + + + L
Sbjct: 1 FDEVKIEKALFWNILM---NELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSL 57
Query: 98 EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNIL 157
+H G+ +H + K G RN V N L
Sbjct: 58 RSVHGGEQLHGFILKSGF-------------------------------GERNSVG-NSL 85
Query: 158 INGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217
+ Y+ + VD AR+VFDE+ ++D++ W S+++G V E+ L +F +M+ G+ D
Sbjct: 86 VAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDL 145
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
+VSV + C+ + GR VH ++ +++ L+DMYSKCG L+ A F +
Sbjct: 146 ATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFRE 205
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+ VV++T+MI G A GL EA+++F +ME +GI P+ T +VL C L+ EG
Sbjct: 206 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG 265
Query: 338 CQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
++ + + FV L+D+ ++ G + +AE M +D IS+ ++
Sbjct: 266 KRVHE---WIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKD-IISWNTIIGG 321
>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 166/513 (32%), Positives = 262/513 (51%), Gaps = 67/513 (13%)
Query: 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND-------------- 61
+D ++ N L+H Y + +DAR LFDKM RDV SWN ++S Y+
Sbjct: 56 TDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQM 115
Query: 62 --------------FSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
FS +G + L F ++ EG + T V + AC++L + GK
Sbjct: 116 SVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGK 175
Query: 105 TVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI-- 162
+H L + + NAL MYAKC +D+A LFD M +N+VS N +I+GY+
Sbjct: 176 QIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRM-VNKNVVSWNSMISGYLQN 234
Query: 163 -----------DME----------------------LVDLAREVFDEIVDKDIVLWRSMM 189
+M+ +D A + F EI +KD V W +MM
Sbjct: 235 GQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMM 294
Query: 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249
GC + + E+AL LF++M+ E V PD + SV+S+C+ L++L G+ VH + +
Sbjct: 295 VGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVD 354
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
D V +AL+DMYSKCG +A + F + ++V++W +MI G A G EAL ++ +M
Sbjct: 355 HDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEM 414
Query: 310 ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL 369
+ +KP+ TFV VL+AC H+GL+ G F + ++ + PT +H+ C+++LL RAG
Sbjct: 415 LHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGY 474
Query: 370 LYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429
+ +A + IK M E + + LLS C + + G+ A ++ +L + Y++LSN
Sbjct: 475 MDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNI 534
Query: 430 YALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YA G W +VA R MK + +K S I++
Sbjct: 535 YAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEI 567
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H +D D+ V ++L+ Y + DA ++F +M R+V SWN+++ Y
Sbjct: 341 GQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQ 400
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYMLN 120
E L L+++++ E + D IT V + SAC + G+ +K+ G+ +
Sbjct: 401 NGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFD 460
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
+ ++ + + MD+A+ L M N + + L++
Sbjct: 461 HYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLS 499
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 115/288 (39%), Gaps = 51/288 (17%)
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ----------------DAFVKTA 257
TP + L + + ++ Y RL+ + + N++ Q D F++
Sbjct: 4 TPRLREAIDALYSRGTANSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNR 63
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTW------------------------------- 286
L+ +Y+K G+L +A F K +DV +W
Sbjct: 64 LLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSY 123
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
T+I G + G ++AL F +M+ +G + + T VSVL AC I G Q+ R+
Sbjct: 124 NTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVA 183
Query: 347 VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406
+ ++ + L ++ ++ G L QA M +S+ +++S + + +
Sbjct: 184 T-SLGESVFVWNALTNMYAKCGALDQARWLFDRM-VNKNVVSWNSMISGYLQNGQPETCT 241
Query: 407 KVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK 454
K+ M G + V +SN + + EA + +E++ + K
Sbjct: 242 KLFCEMQSSGLMPDQ--VTISNILSAYFQCGYIDEACKTFREIKEKDK 287
>gi|302813890|ref|XP_002988630.1| hypothetical protein SELMODRAFT_128138 [Selaginella moellendorffii]
gi|300143737|gb|EFJ10426.1| hypothetical protein SELMODRAFT_128138 [Selaginella moellendorffii]
Length = 612
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/432 (34%), Positives = 236/432 (54%), Gaps = 12/432 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ HA + D++V +L++ YG+ +AR + + M + V SWN +++ Y
Sbjct: 174 GRKFHATFLASGFMMDVFVETTLVNMYGKCGSLAEARGVLEGMEVKSVVSWNAMITAYAQ 233
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L L K++ EGI K+T V + ACA L G++ H A G +N+
Sbjct: 234 HRHGREALELLKKMDLEGIPPSKVTFVSILDACASSGDLTRGRSAHSRAIATGFGGDVNV 293
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRR----NIVSLNILINGYIDMELVDLAREVFDEI 177
N L+ MY KC +DEA ++FDEM SR NIV+ N LIN Y ++ ++ VFD +
Sbjct: 294 NNTLVSMYGKCASLDEARKVFDEMPSRDLLDGNIVA-NFLINLYAKCGSLENSKCVFDGL 352
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
KD+V W +M+ ++ P+EAL+LF+ M EG PD+ V L AC+ G+
Sbjct: 353 KKKDVVSWNAMLTAYIQLDSPKEALKLFQAMDMEGTKPDQVSYVLALDACAGAVAPTQGK 412
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
L H + + D V+ A+++MY++CG+L+ A F + +DVV+WT M+ A +G
Sbjct: 413 LFHSRVASQGLDSDDTVRNAIVNMYAECGNLDAANREFERIKRRDVVSWTVMVAANAQHG 472
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
++L++F++M++ G K ++ +F+ + +C HSGL+ + F M + +QP EHF
Sbjct: 473 NPRDSLKLFWKMQQDGTKADDVSFLCAILSCSHSGLVKDAMACFSSMVEDHGIQPLAEHF 532
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VD L++ G L +AEEF M A +S++A LSAC + + G K A+ +
Sbjct: 533 GCVVDALAKVGRLGEAEEFSLAMDA----VSWRAFLSACRVHGDAKRGVKAAS---LIDA 585
Query: 418 QSHEAYVLLSNF 429
+YVLLSN
Sbjct: 586 SDPNSYVLLSNL 597
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 16/305 (5%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG-SR 148
L C + L G+ +H + +K + N ++ MY KC ++EA R+FD + +
Sbjct: 23 LLRWCGEAQALAEGRKIHDHVSKSDCRADRRLANMVIGMYGKCGSLEEARRVFDTIAMAH 82
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV----LWRSMMHGCVKAKQPEEALEL 204
RN+ S + +++ + A F+++V++ +V L M+ ++ P +AL +
Sbjct: 83 RNLFSWSEMVSACVLNGDYSGAVGFFEKMVEEGVVPDKCLATVMITAHIRNGNPFKALVI 142
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
+ +M EG P+ ++ +L+AC++L +L+ GR H L + D FV+T L++MY K
Sbjct: 143 YWRMHAEGFRPNRASLLGLLAACATLEDLEQGRKFHATFLASGFMMDVFVETTLVNMYGK 202
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
CGSL EA + K VV+W MI A + G EAL + +M+ +GI P++ TFVS+
Sbjct: 203 CGSLAEARGVLEGMEVKSVVSWNAMITAYAQHRHGREALELLKKMDLEGIPPSKVTFVSI 262
Query: 325 LAACRHSGLITEGCQLFRR-----MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
L AC SG +T G R GG V T LV + + L +A +
Sbjct: 263 LDACASSGDLTRGRSAHSRAIATGFGGDVNVNNT------LVSMYGKCASLDEARKVFDE 316
Query: 380 MPAED 384
MP+ D
Sbjct: 317 MPSRD 321
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 167/412 (40%), Gaps = 105/412 (25%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD--KMPFRDVGSWNTLMSIY 59
G+ +H HV+K+ +D + N +I YG+ +AR +FD M R++ SW+ ++S
Sbjct: 36 GRKIHDHVSKSDCRADRRLANMVIGMYGKCGSLEEARRVFDTIAMAHRNLFSWSEMVSAC 95
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKI---------------------------------- 85
D + F++++ EG+V DK
Sbjct: 96 VLNGDYSGAVGFFEKMVEEGVVPDKCLATVMITAHIRNGNPFKALVIYWRMHAEGFRPNR 155
Query: 86 -TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE 144
+L+ L +ACA LE L G+ H G + +E L+ MY KC + EA
Sbjct: 156 ASLLGLLAACATLEDLEQGRKFHATFLASGFMMDVFVETTLVNMYGKCGSLAEA------ 209
Query: 145 MGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
R V + + K +V W +M+ + + EALEL
Sbjct: 210 --------------------------RGVLEGMEVKSVVSWNAMITAYAQHRHGREALEL 243
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
KKM EG+ P + VS+L AC+S +L GR H + D V L+ MY K
Sbjct: 244 LKKMDLEGIPPSKVTFVSILDACASSGDLTRGRSAHSRAIATGFGGDVNVNNTLVSMYGK 303
Query: 265 CGSLEEA---------------------LVTFY-------KTDC-------KDVVTWTTM 289
C SL+EA L+ Y + C KDVV+W M
Sbjct: 304 CASLDEARKVFDEMPSRDLLDGNIVANFLINLYAKCGSLENSKCVFDGLKKKDVVSWNAM 363
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
+ EAL++F M+ +G KP++ ++V L AC + T+G +LF
Sbjct: 364 LTAYIQLDSPKEALKLFQAMDMEGTKPDQVSYVLALDACAGAVAPTQG-KLF 414
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 159/430 (36%), Positives = 252/430 (58%), Gaps = 10/430 (2%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA-RLE 98
+FD++ + WNT+M Y + + + L+L+K ++ + D T ++ ACA RL
Sbjct: 85 IFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLL 144
Query: 99 KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
+ GK +H + KVG + + ++N L+ MYA C M +A +LFDE + VS N ++
Sbjct: 145 EFG-GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDE-SPVLDSVSWNSIL 202
Query: 159 NGYI---DMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215
GY+ DM V A ++F+E+ +KD+V W +++ G + EEAL +F +M G+
Sbjct: 203 AGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRL 262
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI----DMYSKCGSLEEA 271
DE V+VSVLSAC+ LS ++ G+++H +++ I ++ ALI DMY KCG +E A
Sbjct: 263 DEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENA 322
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
L F + K V +W +I GLA GL +L +F +M+ G+ PNE TF+ VL ACRH
Sbjct: 323 LEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHM 382
Query: 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKA 391
GL+ EG F M + ++P ++H+ C+VDLL RAGLL +AE+ I+ MP ++ A
Sbjct: 383 GLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGA 442
Query: 392 LLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451
LL AC + + ++G++V +++L +VLLSN +A +G W +V E R MK+
Sbjct: 443 LLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGV 502
Query: 452 RKKPGNSIID 461
K PG S+I+
Sbjct: 503 VKTPGCSLIE 512
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 98/402 (24%), Positives = 172/402 (42%), Gaps = 99/402 (24%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H HV K DSD+YV N+LI+ Y DAR LFD+ P D SWN++++ Y
Sbjct: 148 GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVK 207
Query: 62 FSDSGEV----------------------------------LILFKQLIFEGIVADKITL 87
D G+V L++F ++ G+ D++ +
Sbjct: 208 KGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVV 267
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
V + SACA L + GK +H ++G+E +N++NAL+ MY+
Sbjct: 268 VSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYS----------------- 310
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
+ Y+ V+ A EVF+ + +K + W +++ G E +L++F +
Sbjct: 311 -----------DMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSE 359
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M + GV P+E + VL AC + + GR +++ + +
Sbjct: 360 MKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIE----------------- 402
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+V + M++ L GL NEA ++ M + P+ AT+ ++L A
Sbjct: 403 -------------PNVKHYGCMVDLLGRAGLLNEAEKLIESMP---MAPDVATWGALLGA 446
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHF-VCLVDLLSRAG 368
C+ G G ++ R++ +QP + F V L ++ + G
Sbjct: 447 CKKHGDTEMGERVGRKL---IELQPDHDGFHVLLSNIFASKG 485
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 36/206 (17%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
+D + ++FD I + + +W +MM +++ E+AL L+K M+ V PD V+ A
Sbjct: 79 LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 138
Query: 227 CSSLSNLQY-GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE---------------- 269
C ++ L++ G+ +H +L+ D +V+ LI+MY+ CG++
Sbjct: 139 C-AVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS 197
Query: 270 ------------------EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
EA F + D KD+V+W+ +I G G+ EAL +F +M
Sbjct: 198 WNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNA 257
Query: 312 KGIKPNEATFVSVLAACRHSGLITEG 337
G++ +E VSVL+AC H ++ G
Sbjct: 258 NGMRLDEVVVVSVLSACAHLSIVKTG 283
>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 697
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 172/533 (32%), Positives = 260/533 (48%), Gaps = 72/533 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + K L DI VG+SL+ Y + F A LFD+MP +DV WNT++S Y
Sbjct: 124 LGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYY 183
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L F + G D +T+ S+CARL L G+ +H G
Sbjct: 184 QSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSF 243
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY----IDMELVDLAREVFDE 176
+ AL+ MY KC +++ A+ +F++M + +V+ N +INGY + + L + ++ E
Sbjct: 244 VSAALVDMYGKCGQLEMAIEVFEQM-PNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSE 302
Query: 177 IV-----------------------------------DKDIVLWRSMMHGCVKAKQPEEA 201
V DI L S+M K + E A
Sbjct: 303 GVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESA 362
Query: 202 LELFKKM---------------IDEG----------------VTPDEEVMVSVLSACSSL 230
+FK M + EG V PD SVL+ACS L
Sbjct: 363 ETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQL 422
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
+ L+ GR +H I++ N+ + V AL+DMY+KCG++EEA F +D+V+WT+MI
Sbjct: 423 AALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMI 482
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
++G EAL +F +M + +KP+ TF+++L+AC H+GL+ +G F +M VY +
Sbjct: 483 TAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGI 542
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGKKVA 409
P IEH+ CL+ LL RAG L++A E ++ P D F L SAC + DLG ++A
Sbjct: 543 IPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIA 602
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
N++ Y++LSN YA G W EV R MK+L +K PG S I++
Sbjct: 603 ENLIDKDPDDSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEI 655
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 192/400 (48%), Gaps = 38/400 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM--PFRDVGSWNTLMSIY 59
GK LH V L +D+YV +LI Y LF A+ +FD + PF ++ N LM+ Y
Sbjct: 22 GKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPF-EISLCNGLMAGY 80
Query: 60 NDFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
E L LF +L+ + + D T + AC L ++ G+ +H K GL
Sbjct: 81 TRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVD 140
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + ++L+ MYAKC E + A++LFD E+
Sbjct: 141 IVVGSSLVGMYAKCNEFECAVKLFD--------------------------------EMP 168
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
DKD+ W +++ ++ + EEAL F M G PD + + +S+C+ L +L GR
Sbjct: 169 DKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGRE 228
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H+ ++ + D+FV AL+DMY KCG LE A+ F + K VV W +MI G G
Sbjct: 229 IHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGD 288
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G +++F +M +G+KP T S L AC S + EG + R+QP I
Sbjct: 289 GISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEG-KFVHGYIIRNRIQPDIFLNS 347
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT 398
L+DL + G + AE K+MP + +S+ ++S +T
Sbjct: 348 SLMDLYFKCGKVESAETIFKLMP-KTTTVSWNVMISGYVT 386
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 157/494 (31%), Positives = 253/494 (51%), Gaps = 65/494 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARV---------------------- 39
G+ +H HV K D D++V SLI Y + DAR
Sbjct: 153 GQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYAS 212
Query: 40 ---------LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
LFD++P +DV SWN ++S Y + + E L LFK+++ I D+ T+V +
Sbjct: 213 RGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTV 272
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+ + G+ VH + G L + N+L+ +Y+KC E++ A LF+ +
Sbjct: 273 VSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGL----- 327
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+ KD++ W +++ G +EAL LF++M+
Sbjct: 328 ---------------------------LYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ--NNITQDAFVKTALIDMYSKCGSL 268
G P++ M+S+L AC+ L + GR +H +I + + T + ++T+LIDMY+KCG +
Sbjct: 361 SGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDI 420
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E A F K + +W MI G A +G + A +F +M + GI+P++ TFV +L+AC
Sbjct: 421 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSAC 480
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
SG++ G +FR M Y++ P +EH+ C++DLL +GL +AEE I M E +
Sbjct: 481 SRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVI 540
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+ +LL AC +LG+ A N++K+ ++ YVLLSN YA G W EVA+ R + +
Sbjct: 541 WCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLND 600
Query: 449 LQTRKKPGNSIIDL 462
+K PG S I++
Sbjct: 601 KGMKKVPGCSSIEI 614
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 185/340 (54%), Gaps = 12/340 (3%)
Query: 5 LHAHVTKTALDSDIYVGNSLI-------HFYGRMALFTDARVLFDKMPFRDVGSWNTLMS 57
+HA + KT L + Y + L+ HF G A +F+ + ++ WNT+
Sbjct: 52 IHAQMIKTGLHNTNYALSKLLELCVISPHFDG----LPYAISVFETIQEPNLLIWNTMFR 107
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ SD L L+ +I G++ + T L +CA+ + G+ +H + K+G +
Sbjct: 108 GHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDL 167
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L + +L+ +Y + +++A ++FD R++VS LI GY ++ A+++FDEI
Sbjct: 168 DLFVHTSLISVYVQNGRLEDARKVFDR-SPHRDVVSYTALIKGYASRGYIESAQKLFDEI 226
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
KD+V W +M+ G + +EALELFK+M+ + PDE MV+V+SAC+ +++ GR
Sbjct: 227 PVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGR 286
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH +I + + + +L+D+YSKCG LE A F KDV++W T+I G +
Sbjct: 287 QVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMN 346
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
L EAL +F +M R G +PN+ T +S+L AC H G I G
Sbjct: 347 LYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIG 386
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 161/371 (43%), Gaps = 71/371 (19%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ + S++ + NSL+ Y + A LF+ + ++DV SWNTL+ Y
Sbjct: 284 LGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYT 343
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L+LF++++ G + +T++ + ACA L + G+ +H Y K L+ N
Sbjct: 344 HMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDK-RLKSATN 402
Query: 121 ---MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ +L+ MYAKC + ++ A +VF+ I
Sbjct: 403 ASSLRTSLIDMYAKCGD--------------------------------IEAAHQVFNSI 430
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+ K + W +M+ G + + A ++F +M G+ PD+ V +LSACS L GR
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGR 490
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+ R +TQD Y LE + MI+ L + G
Sbjct: 491 HIFR-----TMTQD----------YKITPKLEH---------------YGCMIDLLGHSG 520
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
L EA + ME ++P+ + S+L AC+ G + G + + + P +
Sbjct: 521 LFKEAEEMINNME---MEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGC--Y 575
Query: 358 VCLVDLLSRAG 368
V L ++ + AG
Sbjct: 576 VLLSNIYATAG 586
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 157/333 (47%), Gaps = 46/333 (13%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A VF+ I + ++++W +M G + P AL+L+ MI G+ P+ +L +C+
Sbjct: 87 AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 146
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+ G+ +H +L+ D FV T+LI +Y + G LE+A F ++ +DVV++T +
Sbjct: 147 SKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTAL 206
Query: 290 IEGLANYG-----------------------------LGN--EALRVFYQMERKGIKPNE 318
I+G A+ G GN EAL +F +M + I+P+E
Sbjct: 207 IKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDE 266
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
+T V+V++AC SG I G Q+ + + ++ L+DL S+ G L A +
Sbjct: 267 STMVTVVSACAQSGSIELGRQVHSWIDD-HGFGSNLKIVNSLMDLYSKCGELETACGLFE 325
Query: 379 IMPAEDKFISYKALLSACITYSEFDLGKK---VANNMMKLGNQSHEAYVL-----LSNFY 430
+ +D IS+ L+ Y+ +L K+ + M++ G + ++ +L ++
Sbjct: 326 GLLYKD-VISWNTLIGG---YTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLG 381
Query: 431 ALE-GHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A++ G W V +R +K S+ID+
Sbjct: 382 AIDIGRWIHVYIDKR-LKSATNASSLRTSLIDM 413
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/495 (31%), Positives = 264/495 (53%), Gaps = 34/495 (6%)
Query: 3 KGLHAHV-TKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +HA + ++++ S +V N L+ Y R A +FD++ + W +L+ Y +
Sbjct: 19 KSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVE 78
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E LF Q+ E I T+ + A ARL + G+ V+ +A E +
Sbjct: 79 NRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFDEMCEKDIVS 138
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSR------------------------------RNI 151
N ++ Y +D A + FD M R +++
Sbjct: 139 WNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDL 198
Query: 152 VSLNILINGYIDM-ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
S N++++GY+D+ + + AR +FD++ K++V W +M+ G + QP +ALELF++ +
Sbjct: 199 ASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKE 258
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+ + PDE ++ ++SACS L + ++H ++ ++ D V T+LIDMY+KCGS+E
Sbjct: 259 QDIKPDETFILGIISACSQLGIIDAAESIIHNYV-GPSLLSDLRVFTSLIDMYAKCGSIE 317
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+AL F KD++ ++TMI LAN+GLG +A+ +F +M+R IKP+ TF+ VL AC
Sbjct: 318 KALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACN 377
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
H GL+ EG + F++M + +QP+ +H+ C+VDLL R G L +A I+ MP + +
Sbjct: 378 HGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVW 437
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449
ALL+AC + L + A + K+ + Y+LLSN YA G W VA+ R ++E
Sbjct: 438 GALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREH 497
Query: 450 QTRKKPGNSIIDLKH 464
+ RK G+S I+L H
Sbjct: 498 RVRKNRGSSWIELSH 512
>gi|449465220|ref|XP_004150326.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Cucumis sativus]
Length = 874
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/439 (33%), Positives = 242/439 (55%), Gaps = 3/439 (0%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N ++ Y + L AR LF+++P RDV SW ++ + + L+L+ + +
Sbjct: 434 NVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLH 493
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
+++ +V L SAC + + G+ H K G ++ ++ YA C+ +D A
Sbjct: 494 PNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYLQ 553
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
+ +M + ++ S N++I G+ ++D AR++FD + +KD+ W +M+ G + + P+ A
Sbjct: 554 Y-QMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVA 612
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L+LF MID V P+E MVSV SA ++L L GR H ++ I + + A+IDM
Sbjct: 613 LDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAIIDM 672
Query: 262 YSKCGSLEEALVTF--YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
Y+KCGS++ AL F K V W +I GLA +G N +L +F ++R+ IK N
Sbjct: 673 YAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLNSI 732
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
TF+ VL+AC H+GL+ G + F M + V+P I+H+ CLVDLL R G L +AEE ++
Sbjct: 733 TFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAEEIVRT 792
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
MP + + + LL++ T+ E ++G++ A N+ +L VLLSN YA G W +
Sbjct: 793 MPMKADVVIWGTLLASSRTHGEVEIGERAAENLARLQPSHGPGRVLLSNLYADAGLWEDA 852
Query: 440 AEARRNMKELQTRKKPGNS 458
A RR ++ + + PG S
Sbjct: 853 ALVRRAIQSQRMIRSPGYS 871
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 186/398 (46%), Gaps = 63/398 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD------------------- 42
G+ +HA V K +S+ ++ NSLI+ Y + L + AR+LFD
Sbjct: 251 GQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDSVSCNIMMSGYVK 310
Query: 43 ------------KMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
KMP R S+ T++ GE + +FK + G+ +++T+ +
Sbjct: 311 LRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASV 370
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SAC+ + + + +H K+ ++ + LL MY + + RLF+EM RN
Sbjct: 371 MSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEM-PVRN 429
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
VS N+++ GY+ LVD ARE+F+ I ++D+ W M+ G V+ K+ +AL L+ M
Sbjct: 430 TVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRK 489
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC----- 265
+ P+E ++V +LSAC +++ GR H I++N F++ +I Y+ C
Sbjct: 490 SDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDL 549
Query: 266 --------------------------GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
G +++A F KDV +W+TMI G A L
Sbjct: 550 AYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELP 609
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+ AL +F+ M ++PNE T VSV +A G + EG
Sbjct: 610 DVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEG 647
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/422 (24%), Positives = 184/422 (43%), Gaps = 71/422 (16%)
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
++++V CA + G+ +H K G + N+L+ MY KC + A LFD
Sbjct: 232 ELSVVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFD 291
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
S + VS NI+++GY+ + ++ AR++F ++ ++ V + +M+ G + EA+E
Sbjct: 292 SC-SVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIE 350
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
+FK M GV P+E M SV+SACS + + R++H +++ + + T L+ MY
Sbjct: 351 VFKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYC 410
Query: 264 -------------------------------KCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
K G +++A F + +DV +W MI+G
Sbjct: 411 VFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDG 470
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ---LFRRMGGVY- 348
+AL ++ M + + PNE V +L+AC S I EG Q L + G V
Sbjct: 471 FVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCF 530
Query: 349 -RVQPTIEHFVCL---VDL----------------------LSRAGLLYQAEEFIKIMPA 382
+Q TI F +DL ++ G++ QA + +MP
Sbjct: 531 DFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPE 590
Query: 383 EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL-------EGH 435
+D F S+ ++S D+ + + M+ + +E ++S F A+ EG
Sbjct: 591 KDVF-SWSTMISGYAQNELPDVALDLFHGMIDSKVEPNE-ITMVSVFSAIAALGKLPEGR 648
Query: 436 WT 437
W
Sbjct: 649 WA 650
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 119/284 (41%), Gaps = 32/284 (11%)
Query: 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL 75
S + N +I + + + AR +FD MP +DV SW+T++S Y L LF +
Sbjct: 560 SHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVALDLFHGM 619
Query: 76 IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135
I + ++IT+V +FSA A L KL G+ H Y + N+ A++ MYAKC +
Sbjct: 620 IDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAIIDMYAKCGSI 679
Query: 136 DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195
D AL +F ++ + + VS W +++ G
Sbjct: 680 DTALDVFRQIKDKTSTVS------------------------------PWNAIICGLAMH 709
Query: 196 KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFV 254
+LE+F + + + + VLSAC ++ G R Q+ + +
Sbjct: 710 GHANLSLEIFSNLQRRSIKLNSITFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNIKH 769
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYG 297
L+D+ + G L EA K DVV W T++ +G
Sbjct: 770 YGCLVDLLGRVGRLREAEEIVRTMPMKADVVIWGTLLASSRTHG 813
>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 623
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 236/462 (51%), Gaps = 38/462 (8%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HAHV K+ D ++G+ L+ Y +M DA +LFD+MP +D SWN+L+S
Sbjct: 67 IHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQ 126
Query: 65 SGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
GE L +F ++ + + ++ T + + SAC + G VHC A K+GL Y + + N
Sbjct: 127 LGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVN 186
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ MY K ++ A RLF EM +K IV
Sbjct: 187 ALVNMYGKFGFVESAFRLFSEMPES------------------------------EKSIV 216
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV---H 240
W S++ C + P EA F M G PD+ MVS+L AC N GR+V H
Sbjct: 217 SWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACE---NFPLGRMVEVLH 273
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I + ++ + T L+++YSK G L + F + D V WT M+ G A +G G
Sbjct: 274 GVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYAMHGCGK 333
Query: 301 EALRVFYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA+ F ++ R+ G++P+ TF +L+AC HSGL+ EG FR M VY+VQP ++H+ C
Sbjct: 334 EAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQPRLDHYSC 393
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL R GLL A E IK MP E + ALL AC + DLGK+ A N++ L
Sbjct: 394 MVDLLGRCGLLDDAHELIKNMPFEPNSGVWGALLGACRVHRNIDLGKEAAKNLIALDPSD 453
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
Y++LSN Y+ G W + ++ R MK + G S I+
Sbjct: 454 PRNYIMLSNMYSAAGLWNDASKVRTLMKNKVLTRNQGCSFIE 495
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/382 (22%), Positives = 155/382 (40%), Gaps = 70/382 (18%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIY 59
G +H K L ++ V N+L++ YG+ A LF +MP + + SWN+++++
Sbjct: 166 GYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVC 225
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E F + G D T+V L AC + +H GL+ L
Sbjct: 226 AQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACENFPLGRMVEVLHGVIFTCGLDENL 285
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ LL +Y+K ++ + ++F+E+ S+ + V+ ++ GY
Sbjct: 286 TIVTTLLNLYSKLGRLNNSRKVFEEI-SKPDKVAWTAMLAGY------------------ 326
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMI-DEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
MHGC K EA+E F++++ +EG+ PD +LSACS ++ G+
Sbjct: 327 --------AMHGCGK-----EAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKY 373
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
R + D + +D YS M++ L GL
Sbjct: 374 FFR------VMSDVYKVQPRLDHYS------------------------CMVDLLGRCGL 403
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
++A + M +PN + ++L ACR I G + + + + P +++
Sbjct: 404 LDDAHELIKNMP---FEPNSGVWGALLGACRVHRNIDLGKEAAKNLIALDPSDP--RNYI 458
Query: 359 CLVDLLSRAGLLYQAEEFIKIM 380
L ++ S AGL A + +M
Sbjct: 459 MLSNMYSAAGLWNDASKVRTLM 480
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
S S++ R++H ++++ +D F+ L+ Y K G ++A + F + KD V+W +
Sbjct: 57 SSSSVSICRIIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNS 116
Query: 289 MIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEG-----CQLFR 342
++ GLA G E L VF +M+ +K NE TF+SV++AC EG C +
Sbjct: 117 LVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAM-- 174
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP-AEDKFISYKALLSAC 396
++G VY V+ LV++ + G + A MP +E +S+ ++++ C
Sbjct: 175 KLGLVYEVKVVNA----LVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVC 225
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 246/464 (53%), Gaps = 33/464 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ K + N+L+ Y + A+ +F +M R V S+ ++++ Y
Sbjct: 314 LGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYA 373
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+GE + LF+++ EGI D T+ + + CAR L GK VH + + L + +
Sbjct: 374 REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIF 433
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC M EA +F EM ++I+S N +I GY
Sbjct: 434 VSNALMDMYAKCGSMQEAELVFSEM-RVKDIISWNTIIGGY------------------- 473
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLV 239
K EAL LF +++E +PDE + VL AC+SLS GR +
Sbjct: 474 ------------SKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREI 521
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I++N D V +L+DMY+KCG+L A + F KD+V+WT MI G +G G
Sbjct: 522 HGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFG 581
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA+ +F QM + GI+ +E +FVS+L AC HSGL+ EG + F M +++PT+EH+ C
Sbjct: 582 KEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYAC 641
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VD+L+R G L +A FI+ MP + ALL C + + L +KVA + +L ++
Sbjct: 642 IVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPEN 701
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVL++N YA W +V R+ + + RK PG S I++K
Sbjct: 702 TGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIK 745
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 134/428 (31%), Positives = 212/428 (49%), Gaps = 49/428 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ LH + K+ VGNSL+ FY + AR +FD+M RDV SWN++++ Y
Sbjct: 214 GEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 273
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N ++ G L +F Q++ GI D T+V +F+ CA + G+ VH K
Sbjct: 274 NGLAEKG--LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 331
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N LL MY+KC ++D A +F EM S R++VS +I GY ARE
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKAVFREM-SDRSVVSYTSMIAGY--------AREGL----- 377
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
EA++LF++M +EG++PD + +VL+ C+ L G+ V
Sbjct: 378 ------------------AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 419
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I +N++ D FV AL+DMY+KCGS++EA + F + KD+++W T+I G +
Sbjct: 420 HEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYA 479
Query: 300 NEALRVF-YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
NEAL +F +E K P+E T VL AC +G ++ G + R + V
Sbjct: 480 NEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIH---GYIMRNGYFSDRHV 536
Query: 359 C--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA---NNMM 413
LVD+ ++ G L A + ++D +S+ +++ Y GK+ N M
Sbjct: 537 ANSLVDMYAKCGALLLAHMLFDDIASKD-LVSWTVMIAG---YGMHGFGKEAIALFNQMR 592
Query: 414 KLGNQSHE 421
+ G ++ E
Sbjct: 593 QAGIEADE 600
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 185/399 (46%), Gaps = 44/399 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK + + D +G+ L Y +A +FD++ WN LM N+
Sbjct: 113 GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILM---NE 169
Query: 62 FSDSGEV---LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ SG+ + LFK+++ G+ D T + + + L +H G+ +H + K G
Sbjct: 170 LAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGF--- 226
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
RN V N L+ Y+ + VD AR+VFDE+
Sbjct: 227 ----------------------------GERNSVG-NSLVAFYLKNQRVDSARKVFDEMT 257
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++D++ W S+++G V E+ L +F +M+ G+ D +VSV + C+ + GR
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA 317
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH ++ +++ L+DMYSKCG L+ A F + + VV++T+MI G A GL
Sbjct: 318 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGL 377
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EA+++F +ME +GI P+ T +VL C L+ EG ++ + + FV
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE---WIKENDLGFDIFV 434
Query: 359 --CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
L+D+ ++ G + +AE M +D IS+ ++
Sbjct: 435 SNALMDMYAKCGSMQEAELVFSEMRVKD-IISWNTIIGG 472
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 157/362 (43%), Gaps = 44/362 (12%)
Query: 36 DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV-ADKITLVILFSAC 94
D+ FD R V NT + F +SG + K L G D TL + C
Sbjct: 52 DSITTFD----RSVTDANTQL---RRFCESGNLENAVKLLCVSGKWDIDPRTLCSVLQLC 104
Query: 95 ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSL 154
A + L GK V + G N+ + L LMY C ++ EA R+FDE
Sbjct: 105 ADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDE---------- 154
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
V + + +F W +M+ K+ ++ LFKKM+ GV
Sbjct: 155 ------------VKIEKALF----------WNILMNELAKSGDFSGSIGLFKKMMSSGVE 192
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
D V + SSL ++ G +H FIL++ + V +L+ Y K ++ A
Sbjct: 193 MDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKV 252
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F + +DV++W ++I G + GL + L VF QM GI+ + AT VSV A C S LI
Sbjct: 253 FDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLI 312
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFV-CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
+ G + GV + F L+D+ S+ G L A+ + M ++ +SY +++
Sbjct: 313 SLGRAVHSI--GVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREM-SDRSVVSYTSMI 369
Query: 394 SA 395
+
Sbjct: 370 AG 371
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 168/496 (33%), Positives = 253/496 (51%), Gaps = 39/496 (7%)
Query: 5 LHAH-VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFS 63
LH+ V L D + L+ Y + AR +FD+ ++V +N ++ Y + +
Sbjct: 57 LHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNN 116
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
E L +F+ ++ D T + AC+ L+ L G VH KVGL+ L + N
Sbjct: 117 LYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGN 176
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV---------- 173
AL+ MY KC + EA ++ D+M R++VS N ++ GY D A E+
Sbjct: 177 ALVAMYGKCGCLREARKVLDQM-PYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLN 235
Query: 174 ---------------------------FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
F+ + K+++ W M+ V P EA+ LF
Sbjct: 236 HDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFL 295
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
+M + G+ PD + S+L AC LS L GR +H++I + N+ + ++ AL+DMY+KCG
Sbjct: 296 QMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCG 355
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
LEEA F K +DVV+WT+M+ G G +A+ +F +M G P+ FVSVL+
Sbjct: 356 CLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLS 415
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC H+GL+ +G FR M Y + P IEHF C+VDL RAG + +A FIK MP E
Sbjct: 416 ACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNE 475
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
+ ALLSAC +S+ D+G A+ + +L + YVLLSN YA G W +V R M
Sbjct: 476 RVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAM 535
Query: 447 KELQTRKKPGNSIIDL 462
K++ +K PG S ++L
Sbjct: 536 KKIGIKKVPGISNVEL 551
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 108/426 (25%), Positives = 182/426 (42%), Gaps = 113/426 (26%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + K LD+++++GN+L+ YG+ +AR + D+MP+RDV SWN++++ Y
Sbjct: 155 VGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYA 214
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L + K++ + D T+ L V CY + ++Y+ N
Sbjct: 215 QSGQFDDALEICKEMDSLNLNHDAGTMASL-------------SPVVCYTSLENVQYIHN 261
Query: 121 M-----------ENALLLMYAKCKEMDEALRLF---DEMGSRRNIVSL------------ 154
M N ++ +Y +EA+ LF +E G + + V++
Sbjct: 262 MFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSA 321
Query: 155 -----------------------NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHG 191
N L++ Y ++ AR+VFD++ +D+V W SMM
Sbjct: 322 LFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSA 381
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL-QNNITQ 250
++ Q +A+ LF KM+D G PD VSVLSACS L GR R + Q I
Sbjct: 382 YGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVP 441
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
++D++ + G +EEA +F K QM
Sbjct: 442 RIEHFACMVDLFGRAGEVEEAY-SFIK------------------------------QMP 470
Query: 311 RKGIKPNEATFVSVLAACR-HS----GLITEGC--QLFRRMGGVYRVQPTIEHFVCLVDL 363
++PNE + ++L+ACR HS GL+ QL + G Y V L ++
Sbjct: 471 ---MEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYY---------VLLSNI 518
Query: 364 LSRAGL 369
++AG+
Sbjct: 519 YAKAGM 524
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 93/219 (42%), Gaps = 7/219 (3%)
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+L + ++ ++ D + L+ YS G A F ++ K+VV + MI N
Sbjct: 56 KLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNN 115
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
L EAL +F M P+ TF VL AC + G Q+ + +V
Sbjct: 116 NLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVH---DAIVKVGLDTNL 172
Query: 357 FV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
F+ LV + + G L +A + + MP D +S+ ++++ +FD ++ M
Sbjct: 173 FIGNALVAMYGKCGCLREARKVLDQMPYRD-VVSWNSMVAGYAQSGQFDDALEICKEMDS 231
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRK 453
L N +H+A + S + E + NM E T+K
Sbjct: 232 L-NLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKK 269
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 168/496 (33%), Positives = 253/496 (51%), Gaps = 39/496 (7%)
Query: 5 LHAH-VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFS 63
LH+ V L D + L+ Y + AR +FD+ ++V +N ++ Y + +
Sbjct: 57 LHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNN 116
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
E L +F+ ++ D T + AC+ L+ L G VH KVGL+ L + N
Sbjct: 117 LYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGN 176
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV---------- 173
AL+ MY KC + EA ++ D+M R++VS N ++ GY D A E+
Sbjct: 177 ALVAMYGKCGCLREARKVLDQM-PYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLN 235
Query: 174 ---------------------------FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
F+ + K+++ W M+ V P EA+ LF
Sbjct: 236 HDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFL 295
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
+M + G+ PD + S+L AC LS L GR +H++I + N+ + ++ AL+DMY+KCG
Sbjct: 296 QMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCG 355
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
LEEA F K +DVV+WT+M+ G G +A+ +F +M G P+ FVSVL+
Sbjct: 356 CLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLS 415
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC H+GL+ +G FR M Y + P IEHF C+VDL RAG + +A FIK MP E
Sbjct: 416 ACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNE 475
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
+ ALLSAC +S+ D+G A+ + +L + YVLLSN YA G W +V R M
Sbjct: 476 RVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAM 535
Query: 447 KELQTRKKPGNSIIDL 462
K++ +K PG S ++L
Sbjct: 536 KKIGIKKVPGISNVEL 551
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 108/426 (25%), Positives = 180/426 (42%), Gaps = 113/426 (26%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + K LD+++++GN+L+ YG+ +AR + D+MP+RDV SWN++++ Y
Sbjct: 155 VGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYA 214
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L + K++ + D T+ L V CY + ++Y+ N
Sbjct: 215 QSGQFDDALEICKEMDSLNLNHDAGTMASL-------------SPVVCYTSLENVQYIHN 261
Query: 121 M-----------ENALLLMYAKCKEMDEALRLFDEMGS---------------------- 147
M N ++ +Y +EA+ LF +M
Sbjct: 262 MFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSA 321
Query: 148 ----------------RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHG 191
R N++ N L++ Y ++ AR+VFD++ +D+V W SMM
Sbjct: 322 LFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSA 381
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL-QNNITQ 250
++ Q +A+ LF KM+D G PD VSVLSACS L GR R + Q I
Sbjct: 382 YGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVP 441
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
++D++ + G +EEA +F K QM
Sbjct: 442 RIEHFACMVDLFGRAGEVEEAY-SFIK------------------------------QMP 470
Query: 311 RKGIKPNEATFVSVLAACR-HS----GLITEGC--QLFRRMGGVYRVQPTIEHFVCLVDL 363
++PNE + ++L+ACR HS GL+ QL + G Y V L ++
Sbjct: 471 ---MEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYY---------VLLSNI 518
Query: 364 LSRAGL 369
++AG+
Sbjct: 519 YAKAGM 524
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 93/219 (42%), Gaps = 7/219 (3%)
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+L + ++ ++ D + L+ YS G A F ++ K+VV + MI N
Sbjct: 56 KLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNN 115
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
L EAL +F M P+ TF VL AC + G Q+ + +V
Sbjct: 116 NLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVH---DAIVKVGLDTNL 172
Query: 357 FV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
F+ LV + + G L +A + + MP D +S+ ++++ +FD ++ M
Sbjct: 173 FIGNALVAMYGKCGCLREARKVLDQMPYRD-VVSWNSMVAGYAQSGQFDDALEICKEMDS 231
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRK 453
L N +H+A + S + E + NM E T+K
Sbjct: 232 L-NLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKK 269
>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Brachypodium distachyon]
Length = 734
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/463 (32%), Positives = 247/463 (53%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG +H V K + + V NSL+ Y + A +F+ R+ +W+ +++ Y+
Sbjct: 238 MGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYS 297
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ + +F Q+ G + TLV + +AC+ + L GK H K+G E +
Sbjct: 298 QNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVY 357
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+++AL+ MYAKC + +A +E F++ +
Sbjct: 358 VKSALVDMYAKCGCIGDA--------------------------------KECFNQFSEL 385
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIVLW +M+ G V+ + E+AL L+ +M EGV P+ + S+L AC+ L+ L+ G+ +H
Sbjct: 386 DIVLWTAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLH 445
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
IL+ A V +AL MYSKCG+LE+ +V F + +DV+ W ++I G + G GN
Sbjct: 446 TQILKFGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGN 505
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+A+ +F +M+ +G P+ TF++VL AC H GL+ G FR M Y + P ++H+ C+
Sbjct: 506 DAINLFEEMKLEGTAPDPVTFINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACM 565
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+LSRAG+L +A++FI+ + + ++ +L AC + +FD+G +M LG
Sbjct: 566 VDILSRAGMLSEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEKLMDLGTGDS 625
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AY+LLSN YA + W +V R MK + K PG S ++L
Sbjct: 626 AAYILLSNIYAAQRKWNDVERVRYLMKLVGVSKDPGCSWVELN 668
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 166/342 (48%), Gaps = 34/342 (9%)
Query: 5 LHAHVTK-TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFS 63
+HA K + S+++V +L++ Y ++ L DA+++FD+MP R+ SW +++ Y
Sbjct: 139 VHALACKLPSASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARK 198
Query: 64 DSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
S E LF+Q++ E + ++ + SA + L G VH K G+ +++E
Sbjct: 199 CSQEAFELFRQMLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVE 258
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N+L+ MYAK MD A +F+ R +I
Sbjct: 259 NSLVTMYAKAGCMDAAFHVFESSKERNSIT------------------------------ 288
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W +M+ G + E A+ +F +M G P E +V VL+ACS + L G+ H
Sbjct: 289 --WSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGL 346
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+++ +VK+AL+DMY+KCG + +A F + D+V WT M+ G G +A
Sbjct: 347 MVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQA 406
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
L ++ +M+++G+ PN T S+L AC + G QL ++
Sbjct: 407 LMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQI 448
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 119/411 (28%), Positives = 184/411 (44%), Gaps = 46/411 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMA-LFTDAR-VLFDKMP--FRDVGSWNTLMS 57
G+ LHA K+ S V NSLI FY LF A +F +P RDV SWN+L++
Sbjct: 31 GEALHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFAVFADIPAAARDVASWNSLLN 90
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLE 116
+ + L I+ + F+A AR G VH A K+
Sbjct: 91 PLSHHRPLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAGAVVHALACKLPSAS 150
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + ALL MY K + +A +FDEM RN VS
Sbjct: 151 SNVFVSTALLNMYCKLGLIPDAQLVFDEM-PHRNEVS----------------------- 186
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQY 235
W +M+ G K +EA ELF++M+ E + +E V +VLSA S L
Sbjct: 187 --------WAAMVAGYAARKCSQEAFELFRQMLGECPLHKNEFVATAVLSAISVPLGLPM 238
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G VH ++++ + V+ +L+ MY+K G ++ A F + ++ +TW+ MI G +
Sbjct: 239 GVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQ 298
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ---LFRRMGGVYRVQP 352
G A+R+F QM G P E T V VL AC G + EG Q L ++G + VQ
Sbjct: 299 NGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLG--FEVQV 356
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
++ LVD+ ++ G + A+E +E + + A+++ + EF+
Sbjct: 357 YVKS--ALVDMYAKCGCIGDAKECFNQF-SELDIVLWTAMVTGHVQNGEFE 404
>gi|302769798|ref|XP_002968318.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
gi|300163962|gb|EFJ30572.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
Length = 666
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/430 (33%), Positives = 232/430 (53%), Gaps = 1/430 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA V + +S++ VGN+L+ Y DA F KM R+V SWN +++ Y
Sbjct: 236 GREIHALVIERGCESELVVGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIAAYVH 295
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E +F Q+ EG+ + +T V SAC+ G +H + GLE ++
Sbjct: 296 HNCDKEAFRIFHQMQLEGVQPNSVTFVTFLSACSTPAAFEDGLQLHSIVRESGLEADASV 355
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NA++ M+AKC +D+AL F + ++N+ S N L+ YI + + AR++F+ + ++D
Sbjct: 356 GNAVVHMFAKCWSLDDALAAFQRI-PQKNLGSWNGLLGAYIHVGRLAEARKLFEVMEERD 414
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W ++ V+ + +EA+ LF++MI EG + ++L AC+ + L GR +H
Sbjct: 415 VITWNMILGAYVEREMAKEAVRLFRRMIAEGTKSNSITWTTMLGACAGEALLAEGRRIHE 474
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I + + FV AL+DM+ KC SL A F + KD +W ++ LA G E
Sbjct: 475 LIGERGADSELFVGNALVDMFGKCASLGGARQAFERIRGKDASSWNVLVAALAQNGDAEE 534
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL+ F QM+R+GIKP + TF+ V AC H+G + + +F + Y + P H+ +
Sbjct: 535 ALKQFLQMQREGIKPTDVTFIVVFWACSHAGRLEQAKTIFASLRHDYGIAPLPSHYSGMT 594
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +AEE IK +P + + LLSAC + + + G+KVA +++
Sbjct: 595 DLLGRAGFLDEAEEVIKRIPFSQDELPWMTLLSACKVHGDVERGRKVAGQVLRWNPGDSA 654
Query: 422 AYVLLSNFYA 431
A V LSN +A
Sbjct: 655 ARVALSNIFA 664
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 174/341 (51%), Gaps = 27/341 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H V ++ L + I VGN+L++ YG+ AR +FD M RDV SWN +++ Y
Sbjct: 25 GKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALAREVFDGMDHRDVISWNAVITAYAQ 84
Query: 62 FSDSGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYML 119
E + LF+ + +G I D +T V + SAC L G + + G L+ +
Sbjct: 85 AGHCKEAMELFQAMQEDGRIEPDSVTFVAVVSACCDPSALEAGDKIFALVEERGLLDSDV 144
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NAL+ MY+KC + A +F+ M R++VS N +I+ + D+A + F E+
Sbjct: 145 VLGNALVNMYSKCGSLKSATMVFERM-KIRDVVSWNAIISALARHDRKDIAMQRFREMQ- 202
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
++ P+E E + PD + S L+AC+ L+ GR +
Sbjct: 203 -------------LEGLSPKE----------EALLPDGFTLASALAACTGPEMLEEGREI 239
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +++ + V AL+ MY+ CG+L++AL F K ++VV+W MI ++
Sbjct: 240 HALVIERGCESELVVGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIAAYVHHNCD 299
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
EA R+F+QM+ +G++PN TFV+ L+AC +G QL
Sbjct: 300 KEAFRIFHQMQLEGVQPNSVTFVTFLSACSTPAAFEDGLQL 340
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 109/422 (25%), Positives = 186/422 (44%), Gaps = 76/422 (18%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFK 73
LDSD+ +GN+L++ Y + A ++F++M RDV SWN ++S + F+
Sbjct: 140 LDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRDVVSWNAIISALARHDRKDIAMQRFR 199
Query: 74 QLIFEGI-------VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
++ EG+ + D TL +AC E L G+ +H + G E L + NAL+
Sbjct: 200 EMQLEGLSPKEEALLPDGFTLASALAACTGPEMLEEGREIHALVIERGCESELVVGNALV 259
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
MYA C + +AL E F ++ +++V W
Sbjct: 260 SMYANCGTLQDAL--------------------------------ECFQKMAQRNVVSWN 287
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
+M+ V +EA +F +M EGV P+ V+ LSACS+ + + G +H + ++
Sbjct: 288 AMIAAYVHHNCDKEAFRIFHQMQLEGVQPNSVTFVTFLSACSTPAAFEDGLQLHSIVRES 347
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK------------------------- 281
+ DA V A++ M++KC SL++AL F + K
Sbjct: 348 GLEADASVGNAVVHMFAKCWSLDDALAAFQRIPQKNLGSWNGLLGAYIHVGRLAEARKLF 407
Query: 282 ------DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335
DV+TW ++ + EA+R+F +M +G K N T+ ++L AC L+
Sbjct: 408 EVMEERDVITWNMILGAYVEREMAKEAVRLFRRMIAEGTKSNSITWTTMLGACAGEALLA 467
Query: 336 EGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
EG ++ +G E FV LVD+ + L A + + + +D S+ L+
Sbjct: 468 EGRRIHELIG---ERGADSELFVGNALVDMFGKCASLGGARQAFERIRGKDAS-SWNVLV 523
Query: 394 SA 395
+A
Sbjct: 524 AA 525
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 159/334 (47%), Gaps = 49/334 (14%)
Query: 79 GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEA 138
G++ D ++ + +C R++ L GK +H + GL +++ NAL+ MY KC + A
Sbjct: 1 GLLPDNVSFITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALA 60
Query: 139 LRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP 198
+FD M R+++S N +I Y +A
Sbjct: 61 REVFDGM-DHRDVISWNAVITAY-------------------------------AQAGHC 88
Query: 199 EEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN-ITQDAFVKT 256
+EA+ELF+ M ++G + PD V+V+SAC S L+ G + + + + D +
Sbjct: 89 KEAMELFQAMQEDGRIEPDSVTFVAVVSACCDPSALEAGDKIFALVEERGLLDSDVVLGN 148
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
AL++MYSKCGSL+ A + F + +DVV+W +I LA + + A++ F +M+ +G+ P
Sbjct: 149 ALVNMYSKCGSLKSATMVFERMKIRDVVSWNAIISALARHDRKDIAMQRFREMQLEGLSP 208
Query: 317 NEA-------TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV---CLVDLLSR 366
E T S LAAC ++ EG R + + + V LV + +
Sbjct: 209 KEEALLPDGFTLASALAACTGPEMLEEG----REIHALVIERGCESELVVGNALVSMYAN 264
Query: 367 AGLLYQAEEFIKIMPAEDKFISYKALLSACITYS 400
G L A E + M A+ +S+ A+++A + ++
Sbjct: 265 CGTLQDALECFQKM-AQRNVVSWNAMIAAYVHHN 297
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 2/219 (0%)
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
G+ PD ++ L +C + +L G+ +H ++++ + V AL++MY KCGSL A
Sbjct: 1 GLLPDNVSFITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALA 60
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRH 330
F D +DV++W +I A G EA+ +F M+ G I+P+ TFV+V++AC
Sbjct: 61 REVFDGMDHRDVISWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVSACCD 120
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+ G ++F + + + LV++ S+ G L A + M D +S+
Sbjct: 121 PSALEAGDKIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRD-VVSWN 179
Query: 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429
A++SA + D+ + M G E +L F
Sbjct: 180 AIISALARHDRKDIAMQRFREMQLEGLSPKEEALLPDGF 218
>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/462 (30%), Positives = 239/462 (51%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K + +V N+L Y + LF+ M RDV SW T++
Sbjct: 188 GREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQ 247
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ F+++ + ++ T + S CA L ++ +G+ +H + + GL L++
Sbjct: 248 IGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSV 307
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+++ MY+KC ++D LA VF + +D
Sbjct: 308 ANSIMAMYSKCWQLD--------------------------------LASTVFQGLSRRD 335
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
I+ W +M+ G + EEA + M EG P+E SVLS C +++ L+ G+ +H
Sbjct: 336 IISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHA 395
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+L + Q+ V++ALI+MYSKCGS++EA F + + ++V+WT MI G A +G E
Sbjct: 396 HVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQE 455
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ +F ++ + G++P+ TF++VLAAC H+GL+ G F + V+++ P+ +H+ C++
Sbjct: 456 AIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMI 515
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L AE I+ MP + + + LL AC + + D GK+ A +++L
Sbjct: 516 DLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAV 575
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++ L+N YA +G W E AE R+ MK K+PG S I K
Sbjct: 576 THITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFK 617
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 149/310 (48%), Gaps = 37/310 (11%)
Query: 34 FTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-GIVADKITLVILFS 92
+AR LFDKM RD SW T++S Y + ++ E L LF ++ E G+ D L +
Sbjct: 17 LNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALK 76
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
AC + +G+++H Y+ K + + +AL+ MY K ++DE +F EM RN+V
Sbjct: 77 ACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEM-PLRNVV 135
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
S W +++ G V+A +EAL F M +
Sbjct: 136 S-------------------------------WTAIIAGLVRAGYNKEALAYFSDMWIQK 164
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
V D S L AC+ L YGR +H L+ T +FV L MY+KCG L+ L
Sbjct: 165 VGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGL 224
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNE--ALRVFYQMERKGIKPNEATFVSVLAACRH 330
F +DVV+WTT+I ++N +G E A++ F +M + PNE TF +V++ C
Sbjct: 225 RLFESMTQRDVVSWTTII--MSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCAT 282
Query: 331 SGLITEGCQL 340
G I G QL
Sbjct: 283 LGRIEWGEQL 292
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 104/195 (53%), Gaps = 5/195 (2%)
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM-IDEG 212
+N+++ + ++ AR++FD+++ +D + W +++ G V EAL LF KM ++ G
Sbjct: 4 INLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPG 63
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ D ++ L AC ++ +G +H + ++ + FV +AL+DMY K G ++E
Sbjct: 64 LHMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGC 123
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
+ F + ++VV+WT +I GL G EAL F M + + + TF S L AC SG
Sbjct: 124 IVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSG 183
Query: 333 LITEG----CQLFRR 343
+ G CQ ++
Sbjct: 184 ALNYGREIHCQTLKK 198
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/414 (35%), Positives = 239/414 (57%), Gaps = 5/414 (1%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN ++ +++ + + + ++ Q++ G++ D +T L + +RL G ++HC
Sbjct: 76 WNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVV 135
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K GLE+ L + N L+ MY ++ A +LFDEM +N+V+ N +++ Y V AR
Sbjct: 136 KSGLEWDLFICNTLIHMYGSFRDQASARKLFDEM-PHKNLVTWNSILDAYAKSGDVVSAR 194
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV-MVSVLSACSSL 230
VFDE+ ++D+V W SM+ G VK + +ALE+F +M+ G + EV MVSV+ AC+ L
Sbjct: 195 LVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHL 254
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK--DVVTWTT 288
L G+ VHR+IL ++ ++T+LIDMY+KCGS+ +A FY+ K D + W
Sbjct: 255 GALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNA 314
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
+I GLA++G E+L++F++M I P+E TF+ +LAAC H GL+ E F+ +
Sbjct: 315 IIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKES- 373
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
+P EH+ C+VD+LSRAGL+ A +FI MP + ALL+ CI + +L + V
Sbjct: 374 GAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAETV 433
Query: 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+++L + YV L+N YA+ + R M++ +K G+SI+DL
Sbjct: 434 GKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDL 487
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 165/378 (43%), Gaps = 59/378 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH V K+ L+ D+++ N+LIH YG AR LFD+MP +++ +WN+++ Y
Sbjct: 126 LGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYA 185
Query: 61 DFSDSGEVLILFKQL--------------------------IFEGIV------ADKITLV 88
D ++F ++ IF+ ++ A+++T+V
Sbjct: 186 KSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMV 245
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ ACA L L+ GKTVH Y V L + ++ +L+ MYAKC + +A +F +
Sbjct: 246 SVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVK 305
Query: 149 R-NIVSLNILINGYIDMELVDLAREVFDEI----VDKDIVLWRSMMHGCVKAKQPEEALE 203
+ + N +I G + + ++F ++ +D D + + ++ C +EA
Sbjct: 306 ETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWH 365
Query: 204 LFKKMIDEGVTPDEE---VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
FK + + G P E MV VLS + + H FI + I + AL++
Sbjct: 366 FFKSLKESGAEPKSEHYACMVDVLSRAGLVKD------AHDFISEMPIKPTGSMLGALLN 419
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIE----GLANYGLGNEALRVFYQ----MERK 312
G+LE A +T K ++ + GLAN N+ R ME+K
Sbjct: 420 GCINHGNLELA-----ETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKK 474
Query: 313 GIKPNEATFVSVLAACRH 330
G+K + L RH
Sbjct: 475 GVKKIAGHSILDLDGTRH 492
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 127/296 (42%), Gaps = 41/296 (13%)
Query: 118 MLNMENALL---LMYAKCKEMDEALRLFD-----EMGSRRNIVSLNILINGYIDMELVDL 169
ML ++L+ ++ +CK M E ++ + VS + + VD
Sbjct: 1 MLKSSSSLVAKSILRHQCKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDY 60
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A + ++ D W ++ G ++ PE+++ ++ +M+ G+ PD ++ + S
Sbjct: 61 AYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSR 120
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW--- 286
LSN + G +H ++++ + D F+ LI MY A F + K++VTW
Sbjct: 121 LSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSI 180
Query: 287 ----------------------------TTMIEGLANYGLGNEALRVFYQMERKG-IKPN 317
++MI+G G N+AL +F QM R G K N
Sbjct: 181 LDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKAN 240
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
E T VSV+ AC H G + G + R + V+ + T+ L+D+ ++ G + A
Sbjct: 241 EVTMVSVICACAHLGALNRGKTVHRYILDVH-LPLTVILQTSLIDMYAKCGSIGDA 295
>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
Length = 529
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 248/462 (53%), Gaps = 34/462 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + K + ++ + +L+ YG + +FD+MP RD+ WN L++ Y
Sbjct: 98 GEQIHGQIFKLGFEFEVIIQTALLSMYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAH 157
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ +V + ++ + + +T V + S C+ L L GK VH Y TK +E + +
Sbjct: 158 GNCPYKVREVSYDMVSSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDVFV 217
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ +Y+KC + +A+++F M RN+VS
Sbjct: 218 HNALIDVYSKCGSIRDAVQVFQLM-PMRNVVS---------------------------- 248
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
W S+++G P EAL FK+M E + PDE ++ V+ CS L + + G + +
Sbjct: 249 ---WTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQ 305
Query: 242 FILQNNITQDA-FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++++ + +++ + L+DM++KCG+++ A F + K +V+WT MI+GLA YG G
Sbjct: 306 YVVKTGLVKESPAIANVLMDMHAKCGNIKRACQIFDGMEEKTIVSWTIMIQGLAMYGHGL 365
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL F QM+R+G KP+ F+S+L+AC H+GL+ EG + F M Y + P +EH+ C+
Sbjct: 366 SALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHIXPWMEHYGCM 425
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L RAGL+ +A +F++ MP + I ++ LL AC L +V N + +LG +
Sbjct: 426 VDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACXXQGNISLANQVMNXLCELGPKKS 485
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQ-TRKKPGNSIID 461
E YVLLSN +A W V E R+ M + T++ PG S I+
Sbjct: 486 EDYVLLSNLFASNAEWDNVXEVRKEMGDRGVTKQDPGCSFIE 527
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/396 (28%), Positives = 194/396 (48%), Gaps = 40/396 (10%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
+ H+ L S + V + I G ++ AR + D++ D +WNT++ Y + +D
Sbjct: 4 NGHLHNPTLASKLVVSFASITLPGTTSV---ARRIADQIDGLDTYTWNTIIRGYLEGNDP 60
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
E ++++ + +G+ D TLV + AC + G+ +H K+G E+ + ++ AL
Sbjct: 61 EEAILIYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTAL 120
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
L MY LFDE D L +++FDE+ +D+V+W
Sbjct: 121 LSMYG----------LFDE------------------DCGL----QQIFDEMPQRDLVMW 148
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+++ P + E+ M+ V P+ VS+LS CSSL L+ G+ VH ++ +
Sbjct: 149 NALIAAYAHGNCPYKVREVSYDMVSSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTK 208
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
N I D FV ALID+YSKCGS+ +A+ F ++VV+WT++I G ++ NEAL
Sbjct: 209 NLIEXDVFVHNALIDVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGF 268
Query: 306 FYQMERKGIKPNEATFVSVLAACR--HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
F QME + I+P+E T + V+ C S + E + G+ + P I + L+D+
Sbjct: 269 FKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKTGLVKESPAIANV--LMDM 326
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
++ G + +A + M E +S+ ++ Y
Sbjct: 327 HAKCGNIKRACQIFDGM-EEKTIVSWTIMIQGLAMY 361
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 147/462 (31%), Positives = 241/462 (52%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K+ S+I V N+++ YG+ +A LFD M RD SWN +++
Sbjct: 402 GRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQ 461
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L F +I + D T + ACA + L+ G +H K G+ + +
Sbjct: 462 NGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFV 521
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MY KC +++ A ++ D K
Sbjct: 522 GAALVDMYCKCG--------------------------------MIEKADKIHDRTEQKT 549
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G +Q E+A + F +M++ GV PD +VL C++L+ + G+ +H
Sbjct: 550 MVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHA 609
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I++ + D ++ + L+DMYSKCG+++++ + F K +D VTW M+ G A++GLG E
Sbjct: 610 QIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEE 669
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL++F M+ +KPN ATFVSVL AC H GL+ +G F M Y + P EH+ C+V
Sbjct: 670 ALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMV 729
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L R+G + +A ++ MP E + ++ LLS C + ++ +K +++L Q
Sbjct: 730 DILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQLDPQDSS 789
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A VLLSN YA G W V+E R+ M+ + +K+PG S I+LK
Sbjct: 790 ACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIELK 831
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 192/410 (46%), Gaps = 41/410 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH+H K+A SDI VG + + Y + DA+ + MP + S+N ++ Y
Sbjct: 300 LGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYA 359
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L F+ L+ G+ D+ITL +ACA + G+ VH A K +
Sbjct: 360 RSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNIC 419
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NA+L MY KCK + EA LFD M R
Sbjct: 420 VANAILDMYGKCKALAEASDLFDMMERR-------------------------------- 447
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V W +++ C + EE L F MI + PD+ SVL AC+ L G +H
Sbjct: 448 DAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIH 507
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I+++ + D+FV AL+DMY KCG +E+A +T+ K +V+W +I G +
Sbjct: 508 TRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSE 567
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC- 359
+A + F +M G+ P+ T+ +VL C + + G Q+ + + + + + ++C
Sbjct: 568 DAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQ---IIKQELQSDVYICS 624
Query: 360 -LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
LVD+ S+ G + ++ + P D F+++ A+L Y+ LG++
Sbjct: 625 TLVDMYSKCGNMQDSQLMFEKAPNRD-FVTWNAMLCG---YAHHGLGEEA 670
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 112/430 (26%), Positives = 191/430 (44%), Gaps = 73/430 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
GK HA + + +V N L+ Y + A +FDKM RDV S+N+++S Y
Sbjct: 68 GKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISGYAS 127
Query: 60 --------------------------NDFSDSGEV---LILFKQLIFEGIVADKITLVIL 90
+ F +GE + +F ++ G+ D+ +L ++
Sbjct: 128 CGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVV 187
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
AC LE+ G VH K G + + +ALL MYAKCK +D++L +F E+
Sbjct: 188 LKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSEL----- 242
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+K+ V W +M+ GCV+ + E LELFK+M
Sbjct: 243 ---------------------------PEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQG 275
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
GV + + S+ +C++LS L+ G+ +H L++ D V TA +DMY+KCG + +
Sbjct: 276 VGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMAD 335
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A + ++ +I G A G +AL+ F + + G+ +E T L AC
Sbjct: 336 AQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACAS 395
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRAGLLYQAEEFIKIMPAEDKF 386
EG R++ G+ V+ +C ++D+ + L +A + +M D
Sbjct: 396 IRGDLEG----RQVHGL-AVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDA- 449
Query: 387 ISYKALLSAC 396
+S+ A+++AC
Sbjct: 450 VSWNAIIAAC 459
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/420 (25%), Positives = 193/420 (45%), Gaps = 42/420 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
MG +H V K D D+ G++L+ Y + D+ +F ++P ++ SW+ +++ +
Sbjct: 199 MGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCV 258
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
ND + G L LFK++ G+ + LF +CA L L GK +H +A K
Sbjct: 259 QNDRNVEG--LELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSD 316
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + A L MYAKC M +A ++ M + ++ S N +I GY
Sbjct: 317 IIVGTATLDMYAKCGRMADAQKVLSSM-PKCSLQSYNAIIVGY----------------- 358
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++ + +AL+ F+ ++ G+ DE + L+AC+S+ GR
Sbjct: 359 --------------ARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQ 404
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH +++ + V A++DMY KC +L EA F + +D V+W +I G
Sbjct: 405 VHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGN 464
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
E L F M ++P++ T+ SVL AC + G ++ R + + + FV
Sbjct: 465 EEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTR---IIKSGMGFDSFV 521
Query: 359 --CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
LVD+ + G++ +A++ I + +S+ A++S + + K + M+++G
Sbjct: 522 GAALVDMYCKCGMIEKADK-IHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMG 580
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 161/321 (50%), Gaps = 8/321 (2%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T ++ C++ L+ GK H G E + N L+ MY KC +D A ++FD+M
Sbjct: 51 TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKM 110
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
R++VS N +I+GY +D+AR+ F E+ ++D+V W S++ G ++ + +++++F
Sbjct: 111 -YLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVF 169
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+M GV D + VL AC +L G VH +++ D +AL+ MY+KC
Sbjct: 170 LEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKC 229
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
L+++L F + K+ V+W+ MI G E L +F +M+ G+ +++ + S+
Sbjct: 230 KRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLF 289
Query: 326 AACRHSGLITEGCQLFRR-MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
+C + G +L + + + +D+ ++ G + A++ + MP +
Sbjct: 290 RSCAALSALRLGKELHSHALKSAFGSDIIVG--TATLDMYAKCGRMADAQKVLSSMP-KC 346
Query: 385 KFISYKALLSACITYSEFDLG 405
SY A++ + Y+ D G
Sbjct: 347 SLQSYNAII---VGYARSDRG 364
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA + K L SD+Y+ ++L+ Y + D++++F+K P RD +WN ++ Y
Sbjct: 603 LGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYA 662
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLE 116
E L LF+ + + + T V + ACA + + LHY + ++ GL+
Sbjct: 663 HHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVM---LSEYGLD 719
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEM 145
+ ++ + + +DEAL L +M
Sbjct: 720 PQSEHYSCMVDILGRSGRIDEALNLVQKM 748
>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
Length = 579
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 164/462 (35%), Positives = 256/462 (55%), Gaps = 7/462 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + KT L SD+++ N LI Y + AR +FD+MP RD S+N+++ Y
Sbjct: 106 GLQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVK 165
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
LF + E + + I+ L S A+ + G + E L
Sbjct: 166 CGSIESASELFDLMPRE--MKNLISWNSLISGYAQTSE---GVDIASKLFAEMPEKDLIS 220
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+++ Y K +++A LFD M RR++V+ +I+GY + V A+ +FD++ +D
Sbjct: 221 WNSMIDGYVKHGRIEDAKDLFD-MVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRD 279
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V + SMM G V+ + EALE+F M E ++PDE +V VLSA + L L +H
Sbjct: 280 VVAYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMH 339
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I++ + ALIDMYSKCGS++ A++ F + K + W MI GLA +GLG
Sbjct: 340 LYIVEKQFLLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGE 399
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A + Q+ER+ IKP++ TFV VL AC HSGL+ EG F M ++++P ++H+ C+
Sbjct: 400 SAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 459
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+LSR+G + A+ I+ MP E + ++ L+AC + EF+ G+ VA +++ + +
Sbjct: 460 VDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQADYNP 519
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+YVLLSN YA G W +V R MKE + K PG S I+L
Sbjct: 520 SSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIEL 561
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 189/384 (49%), Gaps = 31/384 (8%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYG---RMALFTDARVLFDKMPF----RDVGSWNTLMSI 58
HA + KT + + + ++ + R L AR +F + + D WN ++
Sbjct: 2 HARLIKTGIIKNSNLTTRIVLAFAASPRPYLAEFARFVFHEYHYGGEVEDPYLWNAMIKS 61
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
++ +D L+LF ++ G+ DK +L ++ AC+RL + G +H + K GL
Sbjct: 62 HSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIHGFLKKTGLWSD 121
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L ++N L+ +Y KC + A ++FD M +R+ VS N +I+GY+ ++ A E+FD +
Sbjct: 122 LFLQNCLIGLYLKCGCLGFARQIFDRM-PQRDSVSYNSMIDGYVKCGSIESASELFDLMP 180
Query: 179 D--KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN-LQY 235
K+++ W S++ G Q E +++ K+ E P+++ ++S S + +++
Sbjct: 181 REMKNLISWNSLISGYA---QTSEGVDIASKLFAE--MPEKD----LISWNSMIDGYVKH 231
Query: 236 GRLVHRFILQNNIT-QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
GR+ L + + +D +ID Y+K G + +A F + +DVV + +M+ G
Sbjct: 232 GRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYV 291
Query: 295 NYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
EAL +F ME++ + P+E T V VL+A G +++ + +Y V+
Sbjct: 292 QNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMH-----LYIVEKQ 346
Query: 354 I----EHFVCLVDLLSRAGLLYQA 373
+ V L+D+ S+ G + A
Sbjct: 347 FLLGGKLGVALIDMYSKCGSIQHA 370
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/339 (41%), Positives = 207/339 (61%), Gaps = 1/339 (0%)
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N +L Y E+ EA ++FD M S R++VS N +I+GY V +ARE+FD D+D
Sbjct: 120 NVMLAAYVARGEVAEARKVFDGM-SGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDA 178
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W SM+ K + +EALEL+++M GV PD MVSVLSACS++ L G VHRF
Sbjct: 179 FSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRF 238
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+ N + D + TAL+DMY+KCG +E +L F+ KDV+TW++MI GLAN+GLG++A
Sbjct: 239 VESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDA 298
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F +M +G++PNE TF+ VL AC H GL+ +G + F M V+ V P +EH+ C+VD
Sbjct: 299 LSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVD 358
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL RAG + +A E I+ M + I ++ LL AC + ++ ++ + L +
Sbjct: 359 LLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGH 418
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YVLLSN YA W VAE R+ ++ ++ PG S I+
Sbjct: 419 YVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIE 457
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 124/276 (44%), Gaps = 34/276 (12%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ N++IH Y AR +FD RD SW++++S Y S E L L++++
Sbjct: 146 DLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMR 205
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
G+ D I++V + SAC+ + L G VH + +E + + AL+ MYAKC +++
Sbjct: 206 VAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIE 265
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+L++F M KD++ W SM+ G
Sbjct: 266 NSLKVFHAMPV--------------------------------KDVLTWSSMIIGLANHG 293
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NNITQDAFVK 255
+AL LF +MI +G+ P+E + VL AC+ + + G+ + + +
Sbjct: 294 LGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHY 353
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMI 290
++D+ + G +EEA+ K D + W T++
Sbjct: 354 GCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLL 389
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 88/191 (46%), Gaps = 7/191 (3%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H V ++ D+ +G +L+ Y + ++ +F MP +DV +W++++
Sbjct: 231 IGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLA 290
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
+ + L LF ++I +G+ ++IT + + AC + ++ GK + V G+ +
Sbjct: 291 NHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRM 350
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLARE------V 173
++ + + ++EA+ L M + + + L+ + V++A E V
Sbjct: 351 EHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKV 410
Query: 174 FDEIVDKDIVL 184
D + D VL
Sbjct: 411 LDPLADGHYVL 421
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 161/484 (33%), Positives = 245/484 (50%), Gaps = 64/484 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGR----------------------MALFT---- 35
GK +H HV K L+SD +V SLI+ Y + AL T
Sbjct: 151 GKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTL 210
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
DAR LF+++P RD SWN +++ Y E L F+++ + ++ T+V +
Sbjct: 211 RGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTV 270
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+ L G V + GL L + NAL+ MY+KC ++D+A
Sbjct: 271 LSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA------------ 318
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
R++F+ I +KDI+ W M+ G +EAL LF+KM
Sbjct: 319 --------------------RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQ 358
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT-QDAFVKTALIDMYSKCGSLE 269
V P++ VS+L AC+ L L G+ +H +I + + + + T+LIDMY+KCG++E
Sbjct: 359 SNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIE 418
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
A F K + +W MI GLA +G N AL +F QM +G +P++ TFV VL+AC
Sbjct: 419 AAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACS 478
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
H+GL+ G Q F M Y + P ++H+ C++DLL RAGL +AE +K M + +
Sbjct: 479 HAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIW 538
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449
+LL AC + +LG+ A ++ +L ++ AYVLLSN YA G W +VA R + +
Sbjct: 539 GSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDK 598
Query: 450 QTRK 453
+K
Sbjct: 599 GMKK 602
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 119/419 (28%), Positives = 214/419 (51%), Gaps = 10/419 (2%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF-----YGRMALFTDARVLFDKMPFRDVGSWNTLMS 57
K +H+ + KT L + + + LI F +G ++ A +LF+ + + WNT++
Sbjct: 49 KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSY---ALLLFESIEQPNQFIWNTMIR 105
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ S + + +++ G+ + T L +CA++ GK +H + K+GLE
Sbjct: 106 GNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLES 165
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ +L+ MYA+ E+ A +F + S R+ VS LI GY +D AR +F+EI
Sbjct: 166 DPFVHTSLINMYAQNGELGYAELVFSK-SSLRDAVSFTALITGYTLRGCLDDARRLFEEI 224
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+D V W +M+ G ++ + EEAL F++M V P+E MV+VLSAC+ +L+ G
Sbjct: 225 PVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGN 284
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
V +I + + + + ALIDMYSKCG L++A F KD+++W MI G ++
Sbjct: 285 WVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMN 344
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F +M++ ++PN+ TFVS+L AC + G + G + + + +
Sbjct: 345 SYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLW 404
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L+D+ ++ G + A++ M + S+ A++S + ++ ++ M G
Sbjct: 405 TSLIDMYAKCGNIEAAKQVFAGMKPK-SLGSWNAMISGLAMHGHANMALELFRQMRDEG 462
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 147/339 (43%), Gaps = 68/339 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G + + + L S++ + N+LI Y + AR LF+ + +D+ SWN ++ Y+
Sbjct: 282 LGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYS 341
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYM 118
+ E L LF+++ + + +T V + ACA L L GK +H Y K +GL
Sbjct: 342 HMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNT 401
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ +L+ MYAKC ++ A++VF +
Sbjct: 402 -SLWTSLIDMYAKCGNIEA--------------------------------AKQVFAGMK 428
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K + W +M+ G ALELF++M DEG PD+ V VLSACS ++ GR
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGR- 487
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+C S ++V Y K + + MI+ L GL
Sbjct: 488 -------------------------QCFS---SMVEDYDISPK-LQHYGCMIDLLGRAGL 518
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+EA + ME +KP+ A + S+L ACR G + G
Sbjct: 519 FDEAEALMKNME---MKPDGAIWGSLLGACRVHGNVELG 554
>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 161/465 (34%), Positives = 239/465 (51%), Gaps = 36/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSI 58
+G LHA K L SD +V N+LI+ Y + + AR + D P D SWNT+++
Sbjct: 111 VGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAG 170
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y + L F Q+ ++ D +TL+ ACAR + GK H G E
Sbjct: 171 YIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEIN 230
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
M ++L+ MYAKC ++++A R +FD +
Sbjct: 231 CYMGSSLISMYAKCGQVEDA--------------------------------RRIFDGMP 258
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D++ V W SM+ G + Q +EA++LF+ M GV D+ + +V+S+C + L GR
Sbjct: 259 DRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRY 318
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH + + + +D VK +LIDMYSKCG +++A F +D +WT +I G A GL
Sbjct: 319 VHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWT-VIMGFAANGL 377
Query: 299 GNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F QME +G + PNE TF+ VL +C H GL+ +G + F RM +Y + P IEH+
Sbjct: 378 SGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHY 437
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RA LL +AE+FIK MP + +++LL AC T E L + VA + L
Sbjct: 438 GCMVDLLGRAKLLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEP 497
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
VLLS YA W + + R + + K+PG S I++
Sbjct: 498 NKCGGDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEV 542
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 112/266 (42%), Gaps = 42/266 (15%)
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP-DEEVMVSVLSACSSLSNLQYGRLVH 240
+ L S++ P +L + G P D + + LS + + ++ G +H
Sbjct: 57 VPLLHSVLRSLSSGPVPSLSLSFLSLLRRSGYMPIDNYSLSAALSTAARMPSVVVGAQLH 116
Query: 241 RFILQNNITQDAFVKTALIDMYSKCG--SLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
++ ++ D FV LI+MYS C S +++ D V+W T+I G + GL
Sbjct: 117 ALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGYIHAGL 176
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACR-----------HSGLITEGCQLFRRMGG- 346
N+AL+ F QM + + ++ T ++ L AC H+ L+T G ++ MG
Sbjct: 177 PNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSS 236
Query: 347 ----------------VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI--------MPA 382
++ P + VC ++S L Q++E IK+ +
Sbjct: 237 LISMYAKCGQVEDARRIFDGMPD-RNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKV 295
Query: 383 EDKFISYKALLSACITYSEFDLGKKV 408
+D IS ++S+C DLG+ V
Sbjct: 296 DDATIS--TVVSSCGQMGALDLGRYV 319
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 155/469 (33%), Positives = 255/469 (54%), Gaps = 8/469 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ HA + L + ++ ++ Y A V+FD++ +N+++ Y
Sbjct: 95 LGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYT 154
Query: 61 DFSDSGEV---LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
L + ++ F G++ D TL + +CA L ++ G+ VH +VGLE
Sbjct: 155 RHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEG 214
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ +L+ MY KC + +A +LFD+M R++ S N LI GY+ + +A ++F+ +
Sbjct: 215 DFYVGASLIDMYVKCGVIGDARKLFDKM-IVRDMASWNALIAGYMKEGEIGVAEDLFERM 273
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG--VTPDEEVMVSVLSACSSLSNLQY 235
++IV W +M+ G + E+AL LF +M+ +G + P+ +VSVL AC+ + L+
Sbjct: 274 EHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALER 333
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF--YKTDCKDVVTWTTMIEGL 293
GR +H F + ++ V+TAL MY+KC SL EA F + K+++ W TMI
Sbjct: 334 GRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAY 393
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A++G G EA+ +F M R G++P+ TF+ +L+ C HSGLI G F MG ++ V+P
Sbjct: 394 ASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPR 453
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
+EH+ C+VDLL RAG L +A+E I MP + + ALL+AC ++ ++ + A +
Sbjct: 454 VEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLF 513
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
L + YVLLSN YA G W EV + R +K +K PG S I++
Sbjct: 514 VLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEI 562
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 79/185 (42%), Gaps = 9/185 (4%)
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
++ G+ H I+ + + +AF+ ++ MY+ G L+ A+V F + D + + ++I
Sbjct: 93 IKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRA 152
Query: 293 LANYG---LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
+G L + +M G+ + T VL +C ++ C G R
Sbjct: 153 YTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCAD---LSRVCMGRCVHGQGLR 209
Query: 350 VQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
V + +V L+D+ + G++ A + M D S+ AL++ + E + +
Sbjct: 210 VGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRD-MASWNALIAGYMKEGEIGVAED 268
Query: 408 VANNM 412
+ M
Sbjct: 269 LFERM 273
>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
Length = 583
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 246/465 (52%), Gaps = 39/465 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IY 59
GK +H K LDS +V N+LI Y + +DA + +++ + ++N L++ +
Sbjct: 120 GKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNALITGFVE 179
Query: 60 NDFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N D G EVL + Q +G D+ T V L C + L G+ +HC K+ L
Sbjct: 180 NQQPDKGFEVLRMMYQ---DGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNST 236
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ N ++ MY+K + L++ A + F I
Sbjct: 237 AFIGNLIITMYSK--------------------------------LNLLEEAEKAFRSIE 264
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGR 237
+KD++ W + + C E+ALE FK+M++E V PDE S L+ACS L+++ G+
Sbjct: 265 EKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALAACSGLASMCNGK 324
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H +++ + QD ALI+MY+KCG + +A F K + +++V+W TMI G N+G
Sbjct: 325 QIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKAYYIFSKMEHQNLVSWNTMIAGFGNHG 384
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G +A +F +M+ G+KP+ TFV +L A H+GL+ EG F M Y + P IEHF
Sbjct: 385 FGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHAGLVDEGLVYFNSMEETYGISPEIEHF 444
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
CL+DLL RAG L +A+E++K P + +LLSAC + + D GK A ++KL
Sbjct: 445 SCLIDLLGRAGRLNEAKEYMKKFPFGHDTVVLGSLLSACRLHGDVDTGKCFARQLLKLQP 504
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ YVLLSN YA + W VAEA + +K +K+PG+S+I++
Sbjct: 505 ATTSPYVLLSNLYASDEMWDGVAEAWKLLKGSGLKKEPGHSLIEV 549
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 166/340 (48%), Gaps = 36/340 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LHA KTA SD+ V N +++ Y + +AR +FD+M R++ SW+ ++S Y
Sbjct: 22 GLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMSERNLVSWSAMISGYEQ 81
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L LF +L IV ++ + SACA L+ L GK +H A K GL+ + +
Sbjct: 82 IGEPISALGLFSKL---NIVPNEYVYASVISACASLKGLVQGKQIHGQALKFGLDSVSFV 138
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC + +AL ++E N V+ N LI G+
Sbjct: 139 SNALITMYMKCGKCSDALLAYNE-ALELNPVAYNALITGF-------------------- 177
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V+ +QP++ E+ + M +G PD V +L C+S +L+ G L+H
Sbjct: 178 -----------VENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHC 226
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ + AF+ +I MYSK LEEA F + KD+++W T I ++ +
Sbjct: 227 QTIKLKLNSTAFIGNLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEK 286
Query: 302 ALRVFYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQL 340
AL F +M + ++P+E TF S LAAC + G Q+
Sbjct: 287 ALEAFKEMLNECRVRPDEFTFASALAACSGLASMCNGKQI 326
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 141/311 (45%), Gaps = 45/311 (14%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L C++ + L G +H A K + + N +L +YAKC+++ EA
Sbjct: 9 LIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREA----------- 57
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
R+VFDE+ ++++V W +M+ G + +P AL LF K+
Sbjct: 58 ---------------------RQVFDEMSERNLVSWSAMISGYEQIGEPISALGLFSKL- 95
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+ P+E V SV+SAC+SL L G+ +H L+ + +FV ALI MY KCG
Sbjct: 96 --NIVPNEYVYASVISACASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCS 153
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+AL+ + + + V + +I G ++ V M + G P+ TFV +L C
Sbjct: 154 DALLAYNEALELNPVAYNALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCN 213
Query: 330 HSGLITEG----CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+ G CQ + ++ T ++ + S+ LL +AE+ + + +D
Sbjct: 214 SRDDLKRGELLHCQTIK-----LKLNSTAFIGNLIITMYSKLNLLEEAEKAFRSIEEKD- 267
Query: 386 FISYKALLSAC 396
IS+ +S+C
Sbjct: 268 LISWNTFISSC 278
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
E++ S++ CS L+ G +H ++ D V ++++Y+KC L EA F +
Sbjct: 4 ELVGSLIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDE 63
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+++V+W+ MI G G AL +F ++ I PNE + SV++AC + +G
Sbjct: 64 MSERNLVSWSAMISGYEQIGEPISALGLFSKLN---IVPNEYVYASVISACASLKGLVQG 120
Query: 338 CQL 340
Q+
Sbjct: 121 KQI 123
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 167/509 (32%), Positives = 260/509 (51%), Gaps = 85/509 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + ++ L D++VGN+++ Y + + +A +F++M +DV SWN +++ Y+
Sbjct: 250 GKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQ 309
Query: 62 ---FSDS--------------------------------GEVLILFKQLIFEGIVADKIT 86
F D+ E L +F+Q+ G + +T
Sbjct: 310 IGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVT 369
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME-----------NALLLMYAKCKEM 135
LV L S CA L +GK HC+A K ++LN++ NAL+ MY+KCK
Sbjct: 370 LVSLLSGCALAGTLLHGKETHCHAIK----WILNLDENDPGDDLMVINALIDMYSKCKSP 425
Query: 136 DEALRLFDEMGSR-RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
A +FD + + R++V+ +LI G + HG
Sbjct: 426 KAARAMFDLIPPKDRSVVTWTVLIGG--------------------------NAQHG--- 456
Query: 195 AKQPEEALELFKKMI--DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252
+ EALELF +M+ D V P+ + L AC+ L L++GR +H ++L+N
Sbjct: 457 --EANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAM 514
Query: 253 -FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
FV LIDMYSK G ++ A V F ++ V+WT+++ G +G G EAL++FY+M++
Sbjct: 515 LFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQK 574
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY 371
G+ P+ TFV VL AC HSG++ +G F M + V P EH+ C+VDLLSRAG L
Sbjct: 575 VGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLD 634
Query: 372 QAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431
+A E I+ MP + + ALLSAC Y+ +LG+ AN +++L + + +Y LLSN YA
Sbjct: 635 EAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYA 694
Query: 432 LEGHWTEVAEARRNMKELQTRKKPGNSII 460
W +VA R MK +K+PG S +
Sbjct: 695 NARCWKDVARIRYLMKNTGIKKRPGCSWV 723
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 232/439 (52%), Gaps = 31/439 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVG---SWNTLMSI 58
G +HA V + + +++VGN L+ YGR + +AR +FD+M R VG SWN++++
Sbjct: 145 GASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAA 204
Query: 59 YNDFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y DS + +F+++ + GI D ++LV + ACA + GK VH YA + GL
Sbjct: 205 YMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE 264
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + NA++ MYAKC M+EA ++F+ M +++VS N ++ GY + D A +F++I
Sbjct: 265 DVFVGNAVVDMYAKCGMMEEANKVFERM-KVKDVVSWNAMVTGYSQIGRFDDALGLFEKI 323
Query: 178 ----VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
++ ++V W +++ G + EAL++F++M G P+ +VS+LS C+ L
Sbjct: 324 REEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTL 383
Query: 234 QYGRLVH----RFIL---QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD--VV 284
+G+ H ++IL +N+ D V ALIDMYSKC S + A F KD VV
Sbjct: 384 LHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVV 443
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKG--IKPNEATFVSVLAACRHSGLITEGCQLFR 342
TWT +I G A +G NEAL +F QM + + PN T L AC G + G Q+
Sbjct: 444 TWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIH- 502
Query: 343 RMGGVYRVQPTIEH---FV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
Y ++ E FV CL+D+ S++G + A M + +S+ +L++
Sbjct: 503 ----AYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNG-VSWTSLMTGYG 557
Query: 398 TYSEFDLGKKVANNMMKLG 416
+ + ++ M K+G
Sbjct: 558 MHGRGEEALQIFYEMQKVG 576
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 163/330 (49%), Gaps = 41/330 (12%)
Query: 52 WNTLM--SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCY 109
WN L+ S++ F + +VL L++++ G D T + AC + G +VH
Sbjct: 94 WNQLIRRSVHLGFLE--DVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAV 151
Query: 110 ATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169
G E+ + + N L+ MY +C + A ++FDEM R
Sbjct: 152 VFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGV------------------- 192
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACS 228
D+V W S++ ++ A+++F++M ++ G+ PD +V+VL AC+
Sbjct: 193 ----------GDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACA 242
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
S+ G+ VH + L++ + +D FV A++DMY+KCG +EEA F + KDVV+W
Sbjct: 243 SVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNA 302
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
M+ G + G ++AL +F ++ + I+ N T+ +V+A GL E +FR+M
Sbjct: 303 MVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM---- 358
Query: 349 RVQPTIEHFVCLVDLLSR---AGLLYQAEE 375
R+ + + V LV LLS AG L +E
Sbjct: 359 RLCGSEPNVVTLVSLLSGCALAGTLLHGKE 388
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 108/228 (47%), Gaps = 10/228 (4%)
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W ++ V E+ L+L+++M G PD VL AC + + + G VH
Sbjct: 91 VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 150
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTF---YKTDCKDVVTWTTMIEGLANYGL 298
+ + + FV L+ MY +CG+ E A F + D+V+W +++ G
Sbjct: 151 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 210
Query: 299 GNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
A+++F +M E GI+P+ + V+VL AC G + G Q+ G R + F
Sbjct: 211 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVH---GYALRSGLFEDVF 267
Query: 358 V--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
V +VD+ ++ G++ +A + + M +D +S+ A+++ FD
Sbjct: 268 VGNAVVDMYAKCGMMEEANKVFERMKVKD-VVSWNAMVTGYSQIGRFD 314
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 8/134 (5%)
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
+P+ L + ++ ++ C SL++ + L+H+ +L + D T
Sbjct: 9 KPKPPLLFLTTFFFSTASSTTDLTSTLFHQCKSLASAE---LIHQQLLVQGLPHD---PT 62
Query: 257 ALIDMYSKCGSLEEALVTFYK--TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
+I MY S +AL + V W +I + G + L+++ +M+R G
Sbjct: 63 HIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGW 122
Query: 315 KPNEATFVSVLAAC 328
+P+ TF VL AC
Sbjct: 123 RPDHYTFPFVLKAC 136
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 164/497 (32%), Positives = 249/497 (50%), Gaps = 38/497 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +H+ + L + +G L+ Y + AR +FD++P R+V N ++ Y +
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
GE + +F + + D T + AC+ + G+ +H ATKVGL L +
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV--------- 173
N L+ MY KC + EA + DEM SRR++VS N L+ GY + D A EV
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEM-SRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKI 237
Query: 174 ----------------------------FDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
F ++ K +V W M+ +K P EA+EL+
Sbjct: 238 SHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELY 297
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+M +G PD + SVL AC S L G+ +H +I + + + ++ ALIDMY+KC
Sbjct: 298 SRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKC 357
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G LE+A F +DVV+WT MI G G +A+ +F +++ G+ P+ FV+ L
Sbjct: 358 GCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTL 417
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
AAC H+GL+ EG F+ M Y++ P +EH C+VDLL RAG + +A FI+ M E
Sbjct: 418 AACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPN 477
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
+ ALL AC +S+ D+G A+ + +L + YVLLSN YA G W EV R
Sbjct: 478 ERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNI 537
Query: 446 MKELQTRKKPGNSIIDL 462
MK +K PG S +++
Sbjct: 538 MKSKGLKKNPGASNVEV 554
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 161/372 (43%), Gaps = 78/372 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H TK L S ++VGN L+ YG+ ++AR++ D+M RDV SWN+L+ Y
Sbjct: 158 IGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYA 217
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR--LEKLHYGKTVHCYATKVGLEYM 118
+ L + +++ I D T+ L A + E + Y K + K+G + +
Sbjct: 218 QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMF---FKMGKKSL 274
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNIL---------------ING 160
++ N ++ +Y K EA+ L+ M G + VS+ + I+G
Sbjct: 275 VSW-NVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 333
Query: 161 YIDME-----------LVDL---------AREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
YI+ + L+D+ AR+VF+ + +D+V W +M+ + + +
Sbjct: 334 YIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCD 393
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
A+ LF K+ D G+ PD V+ L+ACS L+ GR + + D
Sbjct: 394 AVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKL---------------MTD 438
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
Y LE M++ L G EA R M ++PNE
Sbjct: 439 HYKITPRLEH---------------LACMVDLLGRAGKVKEAYRFIQDM---SMEPNERV 480
Query: 321 FVSVLAACR-HS 331
+ ++L ACR HS
Sbjct: 481 WGALLGACRVHS 492
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 110/253 (43%), Gaps = 25/253 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H ++ + L ++ + N+LI Y + AR +F+ M RDV SW ++S Y
Sbjct: 327 LGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYG 386
Query: 61 DFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-----VHCYATKVG 114
FS G + + LF +L G+V D I V +AC+ L G++ Y
Sbjct: 387 -FSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPR 445
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAR 171
LE++ M + L + ++ EA R +M N L+ + D ++ LA
Sbjct: 446 LEHLACMVDLL----GRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAA 501
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
+ ++ + + + + KA + EE + M +G+ + S
Sbjct: 502 DKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKN-----------PGAS 550
Query: 232 NLQYGRLVHRFIL 244
N++ R++H F++
Sbjct: 551 NVEVNRIIHTFLV 563
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 156/520 (30%), Positives = 262/520 (50%), Gaps = 62/520 (11%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+ A + + Y+ L+ + T AR LFD++P ++ WN++ Y
Sbjct: 120 IQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSES 179
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
EV+ LF Q+ I + T ++ +C ++ L G+ VHC+ K G +
Sbjct: 180 YREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTT 239
Query: 125 LLLMYAKCKEMDEALRLFDEMGSR------------------------------RNIVSL 154
L+ MY+ + +A ++F EM R R++V
Sbjct: 240 LIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLW 299
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMM-----HGCVKA------KQPE---- 199
NI+++GYI+ + AR++F E+ ++D++ W +++ +G V+A + PE
Sbjct: 300 NIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIF 359
Query: 200 ----------------EALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
E L FK+M+ E V P++ +V+VLSAC+ L L G+ VH +
Sbjct: 360 SWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVY 419
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+ + + +V AL+DMY+KCG +E A+ F D KD+++W T+I GLA + G +A
Sbjct: 420 AESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADA 479
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F+QM+ G KP+ TF+ +L AC H GL+ +G F+ M Y + P IEH+ C+VD
Sbjct: 480 LNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVD 539
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
+L+RAG L QA F++ MP E + + LL AC Y +L + +++L ++
Sbjct: 540 MLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPAN 599
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YV+LSN Y G W +VA + M++ +K PG S+I++
Sbjct: 600 YVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEV 639
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 10/188 (5%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + + L ++YVGN+L+ Y + + +A +F M +D+ SWNTL+
Sbjct: 412 LGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLA 471
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S + L LF Q+ G D IT + + AC + + G Y + +Y++
Sbjct: 472 MHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDG---FAYFQSMADDYLIM 528
Query: 121 ME----NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAREV 173
+ ++ M A+ +++A +M + V L+ Y ++EL +LA +
Sbjct: 529 PQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQR 588
Query: 174 FDEIVDKD 181
E+ K+
Sbjct: 589 LIELEPKN 596
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 151/466 (32%), Positives = 249/466 (53%), Gaps = 36/466 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G+ +H+ K +SD+YV LI Y + AR + + + RDV SW ++++ Y
Sbjct: 364 LGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYV 423
Query: 60 -NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+DF + E L FK++ G+ D I L SACA ++ + G +H G
Sbjct: 424 QHDFCE--EALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+++ N L+ +YA+C +EA LF EI
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLFR--------------------------------EID 509
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
KD + W ++ G +++ E+AL +F KM G + +S +SA ++L++++ G+
Sbjct: 510 HKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQ 569
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH ++ T + V ALI +Y KCGS+E+A + F + ++ V+W T+I + +G
Sbjct: 570 VHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGR 629
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G EAL +F QM+++G+KPN+ TF+ VLAAC H GL+ EG F+ M VY + P +H+
Sbjct: 630 GLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYA 689
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VD+L RAG L +A F+ MP + ++ LLSAC + ++G+ A ++++L
Sbjct: 690 CVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPH 749
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+YVLLSN YA+ G W + R+ MK+ RK+PG S I++K+
Sbjct: 750 DSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKN 795
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 187/394 (47%), Gaps = 34/394 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA V K A S+ +VGN+LI Y F A +F M F D ++NTL+S +
Sbjct: 163 GRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQ 222
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L +F ++ G+ D +T+ L +ACA + L GK +H Y K G+ +
Sbjct: 223 CGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYIT 282
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
E +LL +Y KC +++ A +F+ +G R N+V N+++ Y ++ DLA+
Sbjct: 283 EGSLLDLYVKCGDIETAHDIFN-LGDRTNVVLWNLMLVAY--GQISDLAK---------- 329
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ E+F +M G+ P++ +L C+ ++ G +H
Sbjct: 330 -------------------SFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHS 370
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++N D +V LIDMYSK L++A + +DVV+WT+MI G + E
Sbjct: 371 LSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEE 430
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL F +M+ G+ P+ S +AC + +G Q+ R+ V I + LV
Sbjct: 431 ALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARV-YVSGYAADISIWNTLV 489
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+L +R G +A + + +D+ I++ L+S
Sbjct: 490 NLYARCGRSEEAFSLFREIDHKDE-ITWNGLISG 522
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 152/336 (45%), Gaps = 32/336 (9%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA L +D +GN LI Y + L AR +F ++ RD SW ++S Y
Sbjct: 65 IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGL 124
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E L+ Q+ + ++ L + SAC + + G+ +H A
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIH----------------A 168
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
+ A C E N LI Y+ LA VF +++ D V
Sbjct: 169 QVYKQAFCSETFVG----------------NALIALYLGFGSFKLAERVFCDMLFCDRVT 212
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
+ +++ G + E AL++F +M G+ PD + S+L+AC+S+ +LQ G+ +H ++L
Sbjct: 213 FNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLL 272
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ ++ D + +L+D+Y KCG +E A F D +VV W M+ ++
Sbjct: 273 KAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFE 332
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
+F QM+ GI PN+ T+ +L C +G I G Q+
Sbjct: 333 IFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQI 368
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 1/141 (0%)
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL-VHRFILQNNITQDAFVKT 256
PE+ L L + L AC N L +H + + D +
Sbjct: 23 PEKILSLVAAKASHHRALGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGN 82
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
LID+Y+K G + +A F + +D V+W M+ G A GLG EA R++ QM + P
Sbjct: 83 LLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIP 142
Query: 317 NEATFVSVLAACRHSGLITEG 337
SVL+AC L +G
Sbjct: 143 TPYVLSSVLSACTKGKLFAQG 163
>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 577
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 156/501 (31%), Positives = 268/501 (53%), Gaps = 38/501 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH+H+ KTAL D+++ N LI Y + +A+ FD +P R++ SWNT+++ Y+
Sbjct: 29 VGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDLPIRNIHSWNTILASYS 88
Query: 61 ----------------------------DFSDSG---EVLILFKQLI--FEGIVADKITL 87
F+ G E + +F+Q+ F+ + D+ITL
Sbjct: 89 RAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLLALDEITL 148
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
V + CA L L + + VH A +GLE+ + + NA++ Y KC + D + +F M
Sbjct: 149 VSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSRM-K 207
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
R++V+ ++ Y +D A VF + K++ W ++++ VK K EAL+LF++
Sbjct: 208 ERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLFQQ 267
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT---QDAFVKTALIDMYSK 264
M++E +P+ V VLSAC+ L+ + G+ +H I++ + + +V ALID+YSK
Sbjct: 268 MLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNFPNVYVCNALIDLYSK 327
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
G ++ A + F KDVV+W ++I G A GLG EAL F +M GI+PN+ TF++V
Sbjct: 328 SGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLAFRKMTEVGIRPNKVTFLAV 387
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
L+AC H+GL +EG + M Y ++P++EH+ ++D+ R L +A + I P
Sbjct: 388 LSACSHTGLSSEGLCILELMEKFYDIEPSLEHYAVMIDMFGRENRLAEALDLISRAPNGS 447
Query: 385 KFIS-YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443
K + + A+L AC + DL + A + ++ + YV+LSN +A W + R
Sbjct: 448 KHVGIWGAVLGACRIHENLDLAIRAAETLFEMEPDNAGRYVMLSNVFAAASRWMDAHNVR 507
Query: 444 RNMKELQTRKKPGNSIIDLKH 464
+ M+E +K+ S I++++
Sbjct: 508 KLMEERGFKKEVAYSCIEIRN 528
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 168/356 (47%), Gaps = 46/356 (12%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
LFS C + + L G ++H + K L + L + N L+ MY+KC M+ A + FD++ R
Sbjct: 17 LFSKCIQHKHLRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDL-PIR 75
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
NI S N ++ Y AR+VFDE+ +IV + +++ E++ +F++M
Sbjct: 76 NIHSWNTILASYSRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQ 135
Query: 210 DEG--VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
+ + DE +VS+ C+ L L++ R VH + + + V A++D Y KCG
Sbjct: 136 QDFDLLALDEITLVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCGD 195
Query: 268 LEEALVTFYKTDCKDVVTWTTM-------------------------------IEGLANY 296
+ + F + +DVVTWT+M I L
Sbjct: 196 PDASYSIFSRMKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKN 255
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
NEAL +F QM + PN TFV VL+AC LI +G ++ G + R +
Sbjct: 256 KYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIH---GLIIRRSSELNF 312
Query: 357 ---FVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
+VC L+DL S++G + A ++ +D +S+ +L++ +++ LG++
Sbjct: 313 PNVYVCNALIDLYSKSGDVKSARMLFNLILEKD-VVSWNSLITG---FAQNGLGRE 364
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
P + + S C +L+ G +H +++ ++ D F+ LIDMYSKC S+E A
Sbjct: 9 PSFDHCARLFSKCIQHKHLRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKA 68
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F +++ +W T++ + G ++A +VF +M PN ++ +++++ H GL
Sbjct: 69 FDDLPIRNIHSWNTILASYSRAGFFSQARKVFDEMPH----PNIVSYNTLISSFTHHGLY 124
Query: 335 TEGCQLFRRM 344
E +FR+M
Sbjct: 125 VESMNIFRQM 134
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 158/467 (33%), Positives = 247/467 (52%), Gaps = 37/467 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVG---SWNTLMS 57
MGK + ++ ++ ++ VG +LI Y + DAR +FD F + G WN ++S
Sbjct: 286 MGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDT-NFINCGVNTPWNAMIS 344
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y+ S E L L+ Q+ GI +D T +F+A A + L +G+ VH K GL+
Sbjct: 345 GYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDL 404
Query: 118 ML-NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
M+ ++ NA+ Y+KC +++ R+VFD
Sbjct: 405 MVVSVNNAIADAYSKCGFLEDV--------------------------------RKVFDR 432
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ ++DIV W +++ ++ EEAL F M +EG P++ SVL +C+SL L+YG
Sbjct: 433 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYG 492
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
R VH + + + + +++ALIDMY+KCGS+ EA F K D+V+WT +I G A +
Sbjct: 493 RQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQH 552
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
GL +AL++F +ME GIK N T + VL AC H G++ EG F++M Y V P +EH
Sbjct: 553 GLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEH 612
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C++DLL R G L A EFI+ MP E + ++ LL C + +LG+ A ++ +
Sbjct: 613 YACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIR 672
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ YVLLSN Y G + + R MK+ +K+PG S I +K
Sbjct: 673 PEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVK 719
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 189/399 (47%), Gaps = 39/399 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA + + I+V SL++ Y ++ D+ +F+ M + SWN ++S
Sbjct: 185 LGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCT 244
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E LF ++ + TLV + A +L ++ GK V A+++G+E +
Sbjct: 245 SNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVL 304
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MY+KC + +A +FD IN ++
Sbjct: 305 VGTALIDMYSKCGSLHDARSVFD-----------TNFINCGVNTP--------------- 338
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
W +M+ G ++ +EALEL+ +M G+T D SV +A ++ +LQ+GR+VH
Sbjct: 339 ----WNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVH 394
Query: 241 RFILQNNIT-QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
+L+ + V A+ D YSKCG LE+ F + + +D+V+WTT++ + LG
Sbjct: 395 GMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLG 454
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ---LFRRMGGVYRVQPTIEH 356
EAL F M +G PN+ TF SVL +C + G Q L + G + IE
Sbjct: 455 EEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAG--LDTEKCIES 512
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
L+D+ ++ G + +A + + D +S+ A++S
Sbjct: 513 --ALIDMYAKCGSITEAGKVFDKISNPD-IVSWTAIISG 548
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 114/415 (27%), Positives = 180/415 (43%), Gaps = 50/415 (12%)
Query: 2 GKGLHAHVTKTAL-DSDIYV-GNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
K +H V K+ D D+ V N H Y + + F A +FD+MP R+V SW ++
Sbjct: 83 AKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGS 142
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ + F +++ GI+ DK + +C L+ L GK VH G +
Sbjct: 143 TEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHI 202
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ +LL MYAK ++++ +F+ M + N VS
Sbjct: 203 FVSTSLLNMYAKLGSIEDSYWVFNMM-TEHNQVS-------------------------- 235
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
W +M+ GC EA +LF +M + TP+ +VSV A L ++ G+ V
Sbjct: 236 -----WNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEV 290
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT--DCKDVVTWTTMIEGLANYG 297
+ I + V TALIDMYSKCGSL +A F +C W MI G + G
Sbjct: 291 QNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSG 350
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL ++ QM + GI + T+ SV A S + Q R + G+ ++ ++
Sbjct: 351 CSQEALELYVQMCQNGITSDLYTYCSVFNAIAAS----KSLQFGRVVHGMV-LKCGLDLM 405
Query: 358 V-----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
V + D S+ G L + M D +S+ L++A YS+ LG++
Sbjct: 406 VVSVNNAIADAYSKCGFLEDVRKVFDRMEERD-IVSWTTLVTA---YSQSSLGEE 456
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNIT-QDAFVK-TALIDMYSKCGSLEEALVTFYK 277
++ VL C+ +++ + VH +L++N +D V +YSKC A F +
Sbjct: 67 LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDE 126
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
++V +WT MI G +GL + + F +M GI P++ + +++ +C + +
Sbjct: 127 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSC----IGLDS 182
Query: 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE--FIKIMPAEDKFISYKALLSA 395
+L + + ++ H LL+ L E+ ++ M E +S+ A++S
Sbjct: 183 LELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISG 242
Query: 396 CIT----YSEFDLGKKVANNMMKLGNQSHEAYVLLS 427
C + FDL + MK G + Y L+S
Sbjct: 243 CTSNGLHLEAFDLFVR-----MKNGACTPNMYTLVS 273
>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 245/462 (53%), Gaps = 34/462 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH ++ K ++ Y+ +L+ Y + + DAR +FD++ D+ SW ++ Y
Sbjct: 222 GKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQ 281
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF Q ++ + +T+ +FS+C++L L+ G+++H + K
Sbjct: 282 NGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIK--------- 332
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+GSR IV+ N L++ Y ++ AR VF+ I D+D
Sbjct: 333 -----------------------LGSRDPIVT-NSLVDFYAKCQMNRDARYVFETISDRD 368
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W S++ + EALELF +M V PD +VSVLSAC+SL+ LQ G H
Sbjct: 369 VVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHA 428
Query: 242 FILQNNI-TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ ++ + + + +V TAL+ Y+KCG E A V F D K VTW+ MI G G G
Sbjct: 429 YAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGR 488
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+L +F M + +KPNE F S+L+AC H+G+I EG +LF + Y + P+ +H+ C+
Sbjct: 489 GSLSIFGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRLFTMICQDYNLVPSTKHYTCM 548
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL+RAG L +A +FI+ MP + + A L C +S FDLG+ M++L
Sbjct: 549 VDLLARAGRLKEALDFIQKMPVQPDVSLFGAFLHGCGLHSRFDLGELAIKRMLELHPGDA 608
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVL+ N YA + W++V + R MK+ K PG S++++
Sbjct: 609 CYYVLMCNLYASDARWSKVKQVRELMKQRGLMKTPGCSLMEM 650
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 165/329 (50%), Gaps = 38/329 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ +H + K + D +V L+ Y + +R +FD+ R+V SW+++++ Y
Sbjct: 122 GRKVHCQIVKFG-NPDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQ 180
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N+ + G L+LF ++ E I A++ITL IL AC +L LH GK +H Y K G+E
Sbjct: 181 NNLAQDG--LVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGS 238
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ ALL +YAKC + +A +FDE+
Sbjct: 239 YLVTALLDLYAKCGVVRDARSVFDELHG-------------------------------- 266
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
DIV W +M+ G + PEEAL+LF + V P++ + SV S+CS L NL GR +
Sbjct: 267 IDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSI 326
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ ++D V +L+D Y+KC +A F +DVV W ++I + G
Sbjct: 327 HGLSIKLG-SRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSA 385
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAAC 328
EAL +F+QM + P+ T VSVL+AC
Sbjct: 386 YEALELFHQMRMGSVLPDAVTLVSVLSAC 414
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 115/467 (24%), Positives = 197/467 (42%), Gaps = 73/467 (15%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA++ L D+ L+ YG AR++FD +P D SW ++ Y S+
Sbjct: 24 MHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNSE 83
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+++ + ++ D + + AC+ G+ VHC K G +
Sbjct: 84 FRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPDSF-VFTG 142
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MYAKC E ++ +R VFDE +D+++
Sbjct: 143 LVDMYAKCGE--------------------------------IECSRSVFDENLDRNVFS 170
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W SM+ G V+ ++ L LF +M +E + ++ + ++ AC L L G+ +H +++
Sbjct: 171 WSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLI 230
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ I +++ TAL+D+Y+KCG + +A F + D+V+WT MI G G EAL+
Sbjct: 231 KCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALK 290
Query: 305 VFYQMERKGIKPNEATFVSVLAACR-----------HSGLITEG---------------- 337
+F Q E+ + PN+ T SV ++C H I G
Sbjct: 291 LFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLGSRDPIVTNSLVDFYAK 350
Query: 338 CQLFRRMGGVYRV--QPTIEHFVCLVDLLSRAGLLYQAEEFI------KIMPAEDKFISY 389
CQ+ R V+ + + ++ S+ G Y+A E ++P +S
Sbjct: 351 CQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVS- 409
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV--LLSNFYALEG 434
+LSAC + + +G +K G S YV L FYA G
Sbjct: 410 --VLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCG 454
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 147/327 (44%), Gaps = 44/327 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H K D V NSL+ FY + + DAR +F+ + RDV +WN+++S ++
Sbjct: 322 LGRSIHGLSIKLG-SRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFS 380
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYML 119
+ E L LF Q+ ++ D +TLV + SACA L L G + H YA K G L +
Sbjct: 381 QNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNV 440
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ ALL YAKC + + A +FD M
Sbjct: 441 YVGTALLTFYAKCGDAESARVIFDGMD--------------------------------Q 468
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K V W +M+ G +L +F M+ + P+EE+ S+LSACS + G +
Sbjct: 469 KSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRL 528
Query: 240 HRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL---A 294
I Q+ N+ T ++D+ ++ G L+EAL K + DV + + G +
Sbjct: 529 FTMICQDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVQPDVSLFGAFLHGCGLHS 588
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATF 321
+ LG A++ ++ P +A +
Sbjct: 589 RFDLGELAIKRMLELH-----PGDACY 610
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 151/469 (32%), Positives = 257/469 (54%), Gaps = 8/469 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HAHV K +L ++ ++ + A +LF ++ + +N ++ +
Sbjct: 31 KSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHN 90
Query: 63 SDSGEVLILFKQLIF-------EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
++ +K+++ I D+ T + +C+ L + GK VH + K G
Sbjct: 91 KVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGP 150
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ + MENAL+ MY KC + +A ++FD M R+ +S N +I+G++ + + A +FD
Sbjct: 151 KSNITMENALIDMYTKCASLLDAHKVFDGM-VERDAISWNSIISGHVGVGQMRKAGALFD 209
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
+ + IV W +M+ G + +AL +F++M GV PDE ++SVL AC+ L L+
Sbjct: 210 LMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEV 269
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G+ +H + +N + + + AL++MYSKCG + +A F + DV++W+TMI GLAN
Sbjct: 270 GKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLAN 329
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
+G EA+ +F +M++ I+PN TF+ +L+AC H+G EG F M Y ++P +E
Sbjct: 330 HGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVE 389
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
H+ CLVD+L RAG L QA + I+ MP + + +LLS+C T+S D+ ++ +L
Sbjct: 390 HYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHLEEL 449
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVLLSN YA W V+ R+ +K +K PG+S+ID+ +
Sbjct: 450 EPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLIDINN 498
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 152/365 (41%), Gaps = 97/365 (26%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDAR---------------------- 38
+GK +HAH+ K S+I + N+LI Y + A DA
Sbjct: 137 LGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHV 196
Query: 39 ---------VLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
LFD MP+R + SW ++S Y + L +F+Q+ G+ D+I+++
Sbjct: 197 GVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIIS 256
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ ACA+L L GK +H Y + GL ++ NAL+ MY+KC + +A +LFD+M
Sbjct: 257 VLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSK-- 314
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D++ W +M+ G + EA+ELFK+M
Sbjct: 315 ------------------------------GDVISWSTMIGGLANHGKAREAIELFKRMK 344
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+ P+ + +LSAC+ G A D SK +E
Sbjct: 345 KAKIEPNGITFLGLLSACAHAGFWNEG-------------------LAYFDSMSKDYHIE 385
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+V + +++ L G ++AL V +E+ +KP+ + S+L++CR
Sbjct: 386 -----------PEVEHYGCLVDILGRAGRLSQALDV---IEKMPMKPDSKIWGSLLSSCR 431
Query: 330 -HSGL 333
HS L
Sbjct: 432 THSNL 436
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 148/461 (32%), Positives = 245/461 (53%), Gaps = 32/461 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H K D D++VG +L+ Y + DA+ LF++MP D+ W+ +++ Y
Sbjct: 255 VGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYA 314
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E L LF ++ +V + T + ACA L GK +H K GL +
Sbjct: 315 QSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVF 374
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NA++ +YAKC E++ +++LF+ E+ D+
Sbjct: 375 VSNAIMDVYAKCGEIENSMKLFE--------------------------------ELPDR 402
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ V W +++ G V+ E A+ LF M++ + P E SVL A +SL+ L+ G +H
Sbjct: 403 NDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIH 462
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ +D V +LIDMY+KCG + +A +TF K + +D V+W MI G + +G+
Sbjct: 463 SLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSM 522
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F M+ KPN+ TFV VL+AC ++GL+ +G F M Y ++P IEH+ C+
Sbjct: 523 EALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCM 582
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
V LL R G +A + I + + + ++ALL AC+ + + DLG+ A +++++
Sbjct: 583 VWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDD 642
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+VLLSN YA G W VA R+ M++ + RK+PG S ++
Sbjct: 643 ATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVE 683
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 183/390 (46%), Gaps = 36/390 (9%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LHA V K +D +VG +LI Y AR +FD + +D+ SW +++ Y +
Sbjct: 158 LHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCF 217
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E L LF Q+ G + T+ +C LE + GK+VH A K ++ L + A
Sbjct: 218 YEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIA 277
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
LL +YAK E+ +A RLF+EM D++
Sbjct: 278 LLELYAKSGEIIDAQRLFEEMPK--------------------------------TDLIP 305
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W M+ ++ + +EAL+LF +M V P+ SVL AC+S +L G+ +H +L
Sbjct: 306 WSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVL 365
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ + + FV A++D+Y+KCG +E ++ F + ++ VTW T+I G G G A+
Sbjct: 366 KFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMN 425
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR-RMGGVYRVQPTIEHFVCLVDL 363
+F M ++P E T+ SVL A + G Q+ + +Y + + L+D+
Sbjct: 426 LFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVAN--SLIDM 483
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
++ G + A M D+ +S+ A++
Sbjct: 484 YAKCGRINDARLTFDKMNKRDE-VSWNAMI 512
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 146/339 (43%), Gaps = 32/339 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH H+ K D++ N L++FY + DA LFD+MP + S+ TL Y+
Sbjct: 54 GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L ++ EG + L ++ H T+H K+G +
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLG-----HH 168
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+A + L D R N VD+AR VFD+I KD
Sbjct: 169 ADAFV-----------GTALIDAYSVRGN----------------VDVARHVFDDICCKD 201
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W M+ + EE+L+LF +M G P+ + L +C L G+ VH
Sbjct: 202 MVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHG 261
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
L+ D FV AL+++Y+K G + +A F + D++ W+ MI A E
Sbjct: 262 CALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKE 321
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
AL +F +M + + PN TF SVL AC S + G Q+
Sbjct: 322 ALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQI 360
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 54/358 (15%)
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
G+ ++ + NIL+N Y+ + A ++FDE+ + + + ++ G + Q +AL
Sbjct: 65 GTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFI 124
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
++ EG + V ++L S+ +H + + DAFV TALID YS
Sbjct: 125 LRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVR 184
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G+++ A F CKD+V+WT M+ A E+L++F QM G KPN T L
Sbjct: 185 GNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGAL 244
Query: 326 AACR-----HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
+C + G GC L G Y + + L++L +++G + A+ + M
Sbjct: 245 KSCLGLEAFNVGKSVHGCAL----KGCYDHDLFVG--IALLELYAKSGEIIDAQRLFEEM 298
Query: 381 PAEDKF----------------------------------ISYKALLSACITYSEFDLGK 406
P D ++ ++L AC + DLGK
Sbjct: 299 PKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGK 358
Query: 407 KVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK---ELQTRKK-PGNSII 460
++ + ++K G S+ V +SN A+ + + E +MK EL R N+II
Sbjct: 359 QIHSCVLKFGLNSN---VFVSN--AIMDVYAKCGEIENSMKLFEELPDRNDVTWNTII 411
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 147/467 (31%), Positives = 250/467 (53%), Gaps = 5/467 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +HAH+ L VG+ ++ FY + +F+ + +N+++ Y
Sbjct: 88 LGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYA 147
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + + + + G D T + + L + GK VH ++GL++ L
Sbjct: 148 RYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLY 207
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +L+++Y KC E+++A ++FD M + R++ S N L+ GY +D A +F+ + +
Sbjct: 208 VATSLIILYGKCGEINDAGKVFDNM-TIRDVSSWNALLAGYTKSGCIDAALAIFERMPWR 266
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMI--DEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+IV W +M+ G ++ ++AL LF +M+ D GV P+ ++SVL AC+ LS L+ GR
Sbjct: 267 NIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQ 326
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDVVTWTTMIEGLANY 296
+H + + +A V AL MY+KCGSL +A F K + K+++ W TMI A+Y
Sbjct: 327 IHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASY 386
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G G +A+ F +M + GI+P++ TF +L+ C HSGL+ G + F M Y + P +EH
Sbjct: 387 GHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEH 446
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+ DLL RAG L +A + + MP + +LL+AC + ++ + A + L
Sbjct: 447 YACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLE 506
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++ YVLLSN YA G W EV + R +K T+K PG S I++
Sbjct: 507 PENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEIN 553
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 252/463 (54%), Gaps = 42/463 (9%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
A LF+++P DV N ++ + + L+ ++ G+ D+ T + AC++
Sbjct: 65 AHKLFEEIPKPDVSICNHVLRGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSK 124
Query: 97 LEKLHYGKTVHCYATKVGLEYMLN--MENALLLMYAKCKEM------------------- 135
LE G +H + G ++LN ++NAL+L +A C ++
Sbjct: 125 LEWRSNGFAIHGKVVRHG--FLLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWS 182
Query: 136 ------------DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
DEA+RLFDEM + + V+ N++I G + +D ARE+FD +KD+V
Sbjct: 183 SMTSGYAKRGKIDEAMRLFDEMPDK-DQVAWNVMITGCLKCREMDSARELFDRFTEKDVV 241
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W +M+ G V P+EAL +FK+M D G PD ++S+LSAC+ L +L+ G+ +H +I
Sbjct: 242 TWNAMISGYVNCGYPKEALSIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYI 301
Query: 244 LQN-NITQDAFVKT----ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
L+ +++ +V T ALIDMY+KCGS++ A+ F +D+ TW T+I GLA +
Sbjct: 302 LETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALHH- 360
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
++ +F +M+R + PNE TF+ V+ AC HSG + EG + F M +Y ++P I+H+
Sbjct: 361 AEGSVEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYG 420
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VD+L RAGLL +A F++ M E I ++ LL AC Y +LGK ++ +
Sbjct: 421 CMVDMLGRAGLLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKD 480
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YVLLSN YA G W V + R+ + + +K G S+I+
Sbjct: 481 ESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGISLIE 523
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 130/343 (37%), Positives = 221/343 (64%), Gaps = 1/343 (0%)
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ +L+ +Y C+ + +A +F EM R ++V+ N++I GY+ + ARE+FD + +
Sbjct: 115 HVSASLVQLYCTCRHVADARSVFHEMAVR-DVVAWNVMIAGYVKAGDLAHARELFDAMPE 173
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+++V W +++ G + ++PEEA+E+F++M EG+ PD ++SVLSAC L + G V
Sbjct: 174 RNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWV 233
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
HRF+++ + Q+ + ++IDMY KCG +E+A+ F + K VVTWTT+I G A +GLG
Sbjct: 234 HRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLG 293
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+A+ +F +MER+ + PN+ TF+++L+AC H GL G F M YR++P +EH+ C
Sbjct: 294 LQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGC 353
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL RAG L +A++ +K MP + + ALL+A T+ + DLG++ ++++L +
Sbjct: 354 MVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTHGDADLGEEALVHLIELEPSN 413
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+LLSN +A + W +V++ R+ MKE R PG S I++
Sbjct: 414 SGNYILLSNIFAEQERWDDVSKLRKAMKERGLRNVPGASSIEV 456
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 148/347 (42%), Gaps = 69/347 (19%)
Query: 1 MGKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+G LH+ + +T + SD +V SL+ Y DAR +F +M RDV +WN +++ Y
Sbjct: 96 LGPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGY 155
Query: 60 NDFSD-------------------------------SGEVLILFKQLIFEGIVADKITLV 88
D E + +F+++ EGI D + L+
Sbjct: 156 VKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALL 215
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ SAC L + G+ VH + + GL + + N+++ MY KC +++A+ +F+ M
Sbjct: 216 SVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGM-EE 274
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+++V+ LI G+ +HG +A+E+F++M
Sbjct: 275 KSVVTWTTLIAGF--------------------------ALHGLGL-----QAVEMFRRM 303
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL-QNNITQDAFVKTALIDMYSKCGS 267
E + P++ +++LSACS + GR ++ Q I ++D+ + G
Sbjct: 304 ERENMAPNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGC 363
Query: 268 LEEALVTFYKTDCK-DVVTWTTMIEGLANYG---LGNEALRVFYQME 310
L+EA K + W ++ +G LG EAL ++E
Sbjct: 364 LKEAQDLVKDMPLKANAAIWGALLAASRTHGDADLGEEALVHLIELE 410
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 236 GRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
G +H +L+ ++ D V +L+ +Y C + +A F++ +DVV W MI G
Sbjct: 97 GPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGYV 156
Query: 295 NYG-----------------------LGN--------EALRVFYQMERKGIKPNEATFVS 323
G +G EA+ VF +M+ +GI+P+ +S
Sbjct: 157 KAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLS 216
Query: 324 VLAACRHSGLITEGCQLFR---RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
VL+AC G + G + R R G ++ I ++D+ + G + +A E + M
Sbjct: 217 VLSACGDLGAVDLGEWVHRFVVRRG----LRQEIPLMNSIIDMYMKCGCIEKAVEVFEGM 272
Query: 381 PAEDKFISYKALLSA 395
E +++ L++
Sbjct: 273 -EEKSVVTWTTLIAG 286
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 156/521 (29%), Positives = 262/521 (50%), Gaps = 62/521 (11%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+ A + + Y+ L+ + T AR LFD++P ++ WN++ Y
Sbjct: 57 IQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSES 116
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
EV+ LF Q+ I + T ++ +C ++ L G+ VHC+ K G +
Sbjct: 117 YREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTT 176
Query: 125 LLLMYAKCKEMDEALRLFDEMGSR------------------------------RNIVSL 154
L+ MY+ + +A ++F EM R R++V
Sbjct: 177 LIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLW 236
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMM-----HGCVKA------KQPE---- 199
NI+++GYI+ + AR++F E+ ++D++ W +++ +G V+A + PE
Sbjct: 237 NIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIF 296
Query: 200 ----------------EALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
E L FK+M+ E V P++ +V+VLSAC+ L L G+ VH +
Sbjct: 297 SWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVY 356
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+ + + +V AL+DMY+KCG +E A+ F D KD+++W T+I GLA + G +A
Sbjct: 357 AESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADA 416
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F+QM+ G KP+ TF+ +L AC H GL+ +G F+ M Y + P IEH+ C+VD
Sbjct: 417 LNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVD 476
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
+L+RAG L QA F++ MP E + + LL AC Y +L + +++L ++
Sbjct: 477 MLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPAN 536
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YV+LSN Y G W +VA + M++ +K PG S+I++
Sbjct: 537 YVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVN 577
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 88/188 (46%), Gaps = 10/188 (5%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + + L ++YVGN+L+ Y + + +A +F M +D+ SWNTL+
Sbjct: 349 LGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLA 408
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S + L LF Q+ G D IT + + AC + + G Y + +Y++
Sbjct: 409 MHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDG---FAYFQSMADDYLIM 465
Query: 121 ME----NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAREV 173
+ ++ M A+ +++A+ +M + V L+ Y ++EL +LA +
Sbjct: 466 PQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQR 525
Query: 174 FDEIVDKD 181
E+ K+
Sbjct: 526 LIELEPKN 533
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 159/463 (34%), Positives = 257/463 (55%), Gaps = 4/463 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFY-GRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +HA + KT L SD + ++ F + A ++F ++ ++ WNT++ ++
Sbjct: 42 KQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSR 101
Query: 62 FSDSGEVLILFKQLIFEG--IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
S + +F ++ + ++T +F A RL + G+ +H K GLE
Sbjct: 102 SSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDS 161
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ N +L MY C + EA R+F M ++V+ N +I G+ L+D A+ +FDE+
Sbjct: 162 FIRNTMLHMYVTCGCLIEAWRIFLGMIGF-DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQ 220
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
++ V W SM+ G V+ + ++AL++F++M ++ V PD MVS+L+AC+ L + GR +
Sbjct: 221 RNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWI 280
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I++N ++ V TALIDMY KCG +EE L F K + W +MI GLAN G
Sbjct: 281 HEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFE 340
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
A+ +F ++ER G++P+ +F+ VL AC HSG + + FR M Y ++P+I+H+
Sbjct: 341 ERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTL 400
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+V++L AGLL +AE IK MP E+ + + +LLSAC ++ K+ A + KL
Sbjct: 401 MVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDE 460
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA G + E E R MKE Q K+ G S I++
Sbjct: 461 TCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEV 503
>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
Length = 667
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 153/462 (33%), Positives = 240/462 (51%), Gaps = 33/462 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H ++TK LD + + NS++ Y R+ A +F + + + SW ++ Y
Sbjct: 144 GLSIHGYITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTIILGGYLS 203
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D +V +F Q+ + + D I V L S C L VH K G ++ +
Sbjct: 204 AGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSGFDHKDPI 263
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+N L+ MYAKCK++ A R VFD + +K
Sbjct: 264 DNLLVAMYAKCKDLVSA--------------------------------RRVFDAVHEKS 291
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ LW SM+ G + P EAL LF ++ P+E + +VLSAC+ + +L+ G + +
Sbjct: 292 VFLWTSMISGYAQFGYPNEALHLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQ 351
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+IL N + D V+T+LI M+ KCGS+++A F + KD+ W+ MI G A +G+G E
Sbjct: 352 YILLNGLGSDLRVQTSLIHMFCKCGSIKKAQALFERIPNKDLAVWSAMINGYAVHGMGKE 411
Query: 302 ALRVFYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F++M+ + GIKP+ + SVL AC HSGLI +G + FR M + ++P+I+H+ CL
Sbjct: 412 ALNLFHKMQNEVGIKPDAIVYTSVLLACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYSCL 471
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG + A I+ MP + + LSAC T+ +LG+ A N+ L +S
Sbjct: 472 VDLLGRAGYVELALRTIQEMPVLVQARVWAPFLSACYTHHNLELGEFAAKNLFDLEPRST 531
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+VL++N Y G W E A+AR + K+PG S I++
Sbjct: 532 GNFVLMTNLYTSMGKWKEAAKARSIINARGLVKEPGWSQIEI 573
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 201/420 (47%), Gaps = 53/420 (12%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-NDFS 63
LH+H+ T + ++V +L+ Y + F AR++FD+MP + + SWN+++S + DF
Sbjct: 50 LHSHILLTGFQAHVFVQTALVDVYSKCCCFHSARLVFDQMPIKSLVSWNSIISAHCRDFH 109
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
IL KQ+ G+ T ++C+ L G ++H Y TK+GL+ L + N
Sbjct: 110 IDQSFGIL-KQMQLLGLELSSATFTGFLASCS----LPQGLSIHGYITKLGLDLHLPLAN 164
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
+++ MY + ++D AL +F + +++IVS I++ GY+ D+A+
Sbjct: 165 SIMSMYIRLNQIDGALSVFYTL-HQKSIVSWTIILGGYLSAG--DVAK------------ 209
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
+F +M + V PD V V+++S C NL LVH +
Sbjct: 210 -----------------VFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLL 252
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
L++ + L+ MY+KC L A F K V WT+MI G A +G NEAL
Sbjct: 253 LKSGFDHKDPIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEAL 312
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ-----LFRRMGGVYRVQPTIEHFV 358
+F + R +PNE T +VL+AC G + G + L +G RVQ ++ H
Sbjct: 313 HLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLIHMF 372
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C + G + +A+ + +P +D + + A+++ Y+ +GK+ N K+ N+
Sbjct: 373 C------KCGSIKKAQALFERIPNKDLAV-WSAMING---YAVHGMGKEALNLFHKMQNE 422
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 113/271 (41%), Gaps = 46/271 (16%)
Query: 72 FKQLIFE----------GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+K LIF+ G+ + T + ACA+L L +H + G + + +
Sbjct: 6 WKHLIFKQIPSLSSHTSGVHGSEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFV 65
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ AL+ +Y+KC A R VFD++ K
Sbjct: 66 QTALVDVYSKCCCFHSA--------------------------------RLVFDQMPIKS 93
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W S++ + +++ + K+M G+ L++CS L G +H
Sbjct: 94 LVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASCS----LPQGLSIHG 149
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I + + + +++ MY + ++ AL FY K +V+WT ++ G + G +
Sbjct: 150 YITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTIILGGYLSAGDVAK 209
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
VF QM + + P+ FV++++ C+ SG
Sbjct: 210 VFAVFNQMRCQCVGPDSIVFVNLISCCKLSG 240
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ + ++ L SD+ V SLIH + + A+ LF+++P +D+ W+ +++ Y
Sbjct: 345 MGEEIEQYILLNGLGSDLRVQTSLIHMFCKCGSIKKAQALFERIPNKDLAVWSAMINGYA 404
Query: 61 DFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYM 118
E L LF ++ E GI D I + AC+ + G K G+E
Sbjct: 405 VHGMGKEALNLFHKMQNEVGIKPDAIVYTSVLLACSHSGLIEDGLKYFRSMQKDFGIEPS 464
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEM 145
+ + L+ + + ++ ALR EM
Sbjct: 465 IQHYSCLVDLLGRAGYVELALRTIQEM 491
>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 760
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 161/502 (32%), Positives = 258/502 (51%), Gaps = 40/502 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVG----------- 50
GK +H + LD D +V SL H Y R DAR +FD+M +DV
Sbjct: 135 GKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYAR 194
Query: 51 ------------------------SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKIT 86
SWN ++S +N E +I+F+++ G D++T
Sbjct: 195 KGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVT 254
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+ + + E L+ G+ +H Y K GL + +A+L MY K + ++LFDE
Sbjct: 255 VSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFE 314
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVF----DEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
V N I G LVD A E+F ++ ++ ++V W S++ GC + + EAL
Sbjct: 315 MMETGVC-NAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEAL 373
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
ELF++M GV P+ + S+L AC +++ L +GR H F ++ ++ D V +ALIDMY
Sbjct: 374 ELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMY 433
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
+KCG ++ + + F K++V W +++ G + +G E + +F + R +KP+ +F
Sbjct: 434 AKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFT 493
Query: 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382
S+L+AC GL EG + F M Y ++P +EH+ C+V+LL RAG L +A + IK +P
Sbjct: 494 SLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPF 553
Query: 383 EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442
E + ALL++C + DL + A + L ++ YVL+SN YA +G WTEV
Sbjct: 554 EPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSI 613
Query: 443 RRNMKELQTRKKPGNSIIDLKH 464
R M+ L +K PG S I +K+
Sbjct: 614 RNKMESLGLKKNPGCSWIQVKN 635
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/480 (26%), Positives = 213/480 (44%), Gaps = 75/480 (15%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HA + K+ +D Y+ LI Y F DA ++ +P V S+++L+
Sbjct: 38 HARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLF 97
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
+ + +F ++ G++ D L LF CA L GK +HC A GL+ ++ +L
Sbjct: 98 SQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSL 157
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM----ELVDLAREVFDEIVDKD 181
MY +C M +A ++FD M S +++V+ + L+ GY E+V + E+ ++ +
Sbjct: 158 FHMYMRCGRMGDARKVFDRM-SEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPN 216
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W ++ G ++ +EA+ +F+KM G PD+ + SVL + NL GR +H
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHG 276
Query: 242 FILQNNITQDAFVKTALIDMYSKCGS-------------LEEALVTFYKTDCK------- 281
++++ + +D V +A++DMY K G +E + Y T
Sbjct: 277 YVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDK 336
Query: 282 ---------------DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+VV+WT++I G A G EAL +F +M+ G+KPN T S+L
Sbjct: 337 ALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLP 396
Query: 327 ACRHSGLITEG----------------------------CQLFRRMGGVYRVQPTIEHFV 358
AC + + G C + V+ + PT ++ V
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPT-KNLV 455
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPA------EDKFISYKALLSACITYSEFDLGKKVANNM 412
C L++ + +A+E + I + + FIS+ +LLSAC D G K N M
Sbjct: 456 CWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMM 515
>gi|449436034|ref|XP_004135799.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 706
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 158/463 (34%), Positives = 248/463 (53%), Gaps = 33/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H V + D V +LI Y + AR +F+ MP R++ SWN ++S Y
Sbjct: 275 GKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQ 334
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF++LI + + D T+V L C+R L GK +H + + GL+ L +
Sbjct: 335 NGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVL 394
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
A++ +YAKC + A VF+ + +K+
Sbjct: 395 PTAIVDLYAKCGSLA--------------------------------YASSVFERMKNKN 422
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W +M+ G + +AL+LF +M +E VT + +VS++ C+ L L+ GR VH
Sbjct: 423 VISWTAMLVGLAQNGHARDALKLFDQMQNERVTFNALTLVSLVYCCTLLGLLREGRSVHA 482
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGN 300
+ + + + V TALIDMY+KC + A + F Y KDV+ + +MI G +GLG+
Sbjct: 483 TLTRFHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDVILYNSMISGYGMHGLGH 542
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL V+++M R+G++PNE+TFVS+L+AC HSGL+ EG LF+ M + PT + + C+
Sbjct: 543 KALCVYHRMNREGLQPNESTFVSLLSACSHSGLVEEGIALFQNMVKDHNTTPTDKLYACI 602
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLLSRAG L QAEE I MP + LL+ C+ + + +LG K+A+ ++ L +++
Sbjct: 603 VDLLSRAGRLRQAEELINQMPFTPTSGILETLLNGCLLHKDIELGVKLADRLLSLESRNP 662
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+ LSN YA W V R M E + +K PG S I++
Sbjct: 663 SIYITLSNIYAKASRWDSVKYVRGLMMEQEIKKIPGYSSIEVN 705
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 170/384 (44%), Gaps = 48/384 (12%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY---NDFSDSGEVLILFK 73
D ++ L+ Y + +AR +FD++P N +++ Y ++D E+L +
Sbjct: 88 DQFLVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCIELLKMMS 147
Query: 74 QLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
+ E D T AC L L+Y + ME ++ A CK
Sbjct: 148 RCHLE---FDSYTCNFALKACMFL-----------------LDYEMGME---VIGLAVCK 184
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
+ L GS ++N + + A+ F ++V+KD+V W M+ G +
Sbjct: 185 GLAGGRFL----GSS--------ILNFLVKTGDIMCAQFFFHQMVEKDVVCWNVMIGGFM 232
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ E LF M+ + P M+S++ +C + NL +G+ +H F+L +++D
Sbjct: 233 QEGLFREGYNLFLDMLYNKIEPSAVTMISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTR 292
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
V T LIDMY K G +E A F +++V+W MI G GL E LR+F ++
Sbjct: 293 VLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDD 352
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQL----FRRMGGVYRVQPTIEHFVCLVDLLSRAGL 369
+ + T VS++ C + + G L +RR + V PT +VDL ++ G
Sbjct: 353 VGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPT-----AIVDLYAKCGS 407
Query: 370 LYQAEEFIKIMPAEDKFISYKALL 393
L A + M ++ IS+ A+L
Sbjct: 408 LAYASSVFERMKNKN-VISWTAML 430
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 257/470 (54%), Gaps = 15/470 (3%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + + L D ++ + + ++ F+ +F+ + WNT + Y++
Sbjct: 92 VHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYS 151
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ LF ++ V DK T L AC+++ + G H A + G+ + + +
Sbjct: 152 VSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTS 211
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ +Y KC E+ A ++FDEMG RN+VS +I GY + AR++FDE+ +K+ V
Sbjct: 212 LIDLYGKCGEILCARKVFDEMG-ERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVS 270
Query: 185 WRSMMHGCVKAKQPEEALELFKKM-------------IDEGVTPDEEVMVSVLSACSSLS 231
W +++ G VK A ++F +M I V PDE +MVS++SACS +
Sbjct: 271 WNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISGNVKPDEFIMVSLMSACSQMG 330
Query: 232 NLQYGRLVHRFILQNNI-TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
+L+ + V ++ +++I A V ALIDM +KCGS++ A F + +D++++ +M+
Sbjct: 331 SLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMM 390
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
+GL+ +G G +A+ +F +M +G+ P++ F +L AC +GL+ EGC F M Y +
Sbjct: 391 QGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSI 450
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
P+ +H+ C+VDLL RAG L +A E +K MP E ++ ALL AC + + +LG+ VA+
Sbjct: 451 VPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVAD 510
Query: 411 NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
+ +L Q+ YVLLSN YA W +V+ R M+E RK PG S I
Sbjct: 511 QLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 560
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 128/316 (40%), Gaps = 78/316 (24%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G H + + D++V SLI YG+ AR +FD+M R+V SW +++ Y
Sbjct: 190 GVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYAS 249
Query: 62 FSDSGEVLILFKQ--------------------------------------------LIF 77
FSD E LF + LI
Sbjct: 250 FSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALIS 309
Query: 78 EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE-YMLNMENALLLMYAKCKEMD 136
+ D+ +V L SAC+++ L K V Y K ++ + ++ AL+ M AKC MD
Sbjct: 310 GNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMD 369
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A +LF+EM +R+++S ++ G +HGC
Sbjct: 370 RATKLFEEM-PKRDLISYCSMMQGL--------------------------SIHGC---- 398
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVK 255
+A+ LF +M++EG+TPD+ +L+ACS + G + + +I
Sbjct: 399 -GPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHY 457
Query: 256 TALIDMYSKCGSLEEA 271
++D+ + G L+EA
Sbjct: 458 ACMVDLLGRAGRLKEA 473
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 166/509 (32%), Positives = 260/509 (51%), Gaps = 85/509 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + ++ L D++VGN+++ Y + + +A +F++M +DV SWN +++ Y+
Sbjct: 269 GKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQ 328
Query: 62 ---FSDS--------------------------------GEVLILFKQLIFEGIVADKIT 86
F D+ E L +F+Q++ G + +T
Sbjct: 329 IGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVT 388
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME-----------NALLLMYAKCKEM 135
LV L S CA L +GK HC+A K ++LN++ NAL+ MY+KCK
Sbjct: 389 LVSLLSGCASAGTLLHGKETHCHAIK----WILNLDENDPGDDLMVINALIDMYSKCKSP 444
Query: 136 DEALRLFDEMGSR-RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
A +FD + + R++V+ +LI G + HG
Sbjct: 445 KAARAMFDLIPPKDRSVVTWTVLIGG--------------------------NAQHG--- 475
Query: 195 AKQPEEALELFKKMI--DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252
+ EALELF +M+ D V P+ + L AC+ L L++GR +H ++L+N
Sbjct: 476 --EANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAM 533
Query: 253 -FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
FV LIDMYSK G ++ A V F ++ V+WT+++ G +G G EAL++FY+M++
Sbjct: 534 LFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQK 593
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY 371
+ P+ TFV VL AC HSG++ +G F M + V P EH+ C+VDLLSRAG L
Sbjct: 594 VXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLD 653
Query: 372 QAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431
+A E I+ MP + + ALLSAC Y+ +LG+ AN +++L + + +Y LLSN YA
Sbjct: 654 EAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYA 713
Query: 432 LEGHWTEVAEARRNMKELQTRKKPGNSII 460
W +VA R MK +K+PG S +
Sbjct: 714 NARCWKDVARIRYLMKNTGIKKRPGCSWV 742
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 135/391 (34%), Positives = 215/391 (54%), Gaps = 30/391 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVG---SWNTLMSI 58
G +HA V + + +++VGN L+ YGR + +AR +FD+M R VG SWN++++
Sbjct: 164 GASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAA 223
Query: 59 YNDFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y DS + +F+++ + GI D ++LV + ACA + GK VH YA + GL
Sbjct: 224 YMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE 283
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + NA++ MYAKC M+EA ++F+ M +++VS N ++ GY + D A +F++I
Sbjct: 284 DVFVGNAVVDMYAKCGMMEEANKVFERM-KVKDVVSWNAMVTGYSQIGRFDDALGLFEKI 342
Query: 178 ----VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
++ ++V W +++ G + EAL++F++M+ G P+ +VS+LS C+S L
Sbjct: 343 REEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTL 402
Query: 234 QYGRLVH----RFIL---QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD--VV 284
+G+ H ++IL +N+ D V ALIDMYSKC S + A F KD VV
Sbjct: 403 LHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVV 462
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKG--IKPNEATFVSVLAACRHSGLITEGCQLFR 342
TWT +I G A +G NEAL +F QM + + PN T L AC G + G Q+
Sbjct: 463 TWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIH- 521
Query: 343 RMGGVYRVQPTIEH---FV--CLVDLLSRAG 368
Y ++ E FV CL+D+ S++G
Sbjct: 522 ----AYVLRNRFESAMLFVANCLIDMYSKSG 548
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 161/327 (49%), Gaps = 35/327 (10%)
Query: 52 WNTLM--SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCY 109
WN L+ S++ F + +VL L++++ G D T + AC + G +VH
Sbjct: 113 WNQLIRRSVHLGFLE--DVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAV 170
Query: 110 ATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169
G E+ + + N L+ MY +C + A ++FDEM R
Sbjct: 171 VFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGV------------------- 211
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACS 228
D+V W S++ ++ A+++F++M ++ G+ PD +V+VL AC+
Sbjct: 212 ----------GDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACA 261
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
S+ G+ VH + L++ + +D FV A++DMY+KCG +EEA F + KDVV+W
Sbjct: 262 SVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNA 321
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
M+ G + G ++AL +F ++ + I+ N T+ +V+A GL E +FR+M +
Sbjct: 322 MVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM-LLC 380
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEE 375
+P + V L+ + AG L +E
Sbjct: 381 GSEPNVVTLVSLLSGCASAGTLLHGKE 407
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 108/228 (47%), Gaps = 10/228 (4%)
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W ++ V E+ L+L+++M G PD VL AC + + + G VH
Sbjct: 110 VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 169
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTF---YKTDCKDVVTWTTMIEGLANYGL 298
+ + + FV L+ MY +CG+ E A F + D+V+W +++ G
Sbjct: 170 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 229
Query: 299 GNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
A+++F +M E GI+P+ + V+VL AC G + G Q+ G R + F
Sbjct: 230 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVH---GYALRSGLFEDVF 286
Query: 358 V--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
V +VD+ ++ G++ +A + + M +D +S+ A+++ FD
Sbjct: 287 VGNAVVDMYAKCGMMEEANKVFERMKVKD-VVSWNAMVTGYSQIGRFD 333
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
+P+ L + ++ ++ C SL++ + L H+ +L + D T
Sbjct: 28 KPKPPLLFLTTFFFSTASSTTDLTSTLFHQCKSLASAE---LTHQQLLVQGLPHD---PT 81
Query: 257 ALIDMYSKCGSLEEALVTFYK--TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
+I MY S +AL + V W +I + G + L+++ +M+R G
Sbjct: 82 HIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGW 141
Query: 315 KPNEATFVSVLAAC 328
+P+ TF VL AC
Sbjct: 142 RPDHYTFPFVLKAC 155
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 158/467 (33%), Positives = 247/467 (52%), Gaps = 37/467 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVG---SWNTLMS 57
MGK + ++ ++ ++ VG +LI Y + DAR +FD F + G WN ++S
Sbjct: 340 MGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDT-NFINCGVNTPWNAMIS 398
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y+ S E L L+ Q+ GI +D T +F+A A + L +G+ VH K GL+
Sbjct: 399 GYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDL 458
Query: 118 ML-NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
M+ ++ NA+ Y+KC +++ R+VFD
Sbjct: 459 MVVSVNNAIADAYSKCGFLEDV--------------------------------RKVFDR 486
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ ++DIV W +++ ++ EEAL F M +EG P++ SVL +C+SL L+YG
Sbjct: 487 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYG 546
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
R VH + + + + +++ALIDMY+KCGS+ EA F K D+V+WT +I G A +
Sbjct: 547 RQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQH 606
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
GL +AL++F +ME GIK N T + VL AC H G++ EG F++M Y V P +EH
Sbjct: 607 GLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEH 666
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C++DLL R G L A EFI+ MP E + ++ LL C + +LG+ A ++ +
Sbjct: 667 YACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIR 726
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ YVLLSN Y G + + R MK+ +K+PG S I +K
Sbjct: 727 PEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVK 773
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/399 (27%), Positives = 190/399 (47%), Gaps = 39/399 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA + + I+V SL++ Y ++ D+ +F+ M + SWN ++S
Sbjct: 239 LGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCT 298
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E LF ++ + TLV + A +L ++ GK V A+++G+E +
Sbjct: 299 SNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVL 358
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MY+KC + +A +FD N + N +N
Sbjct: 359 VGTALIDMYSKCGSLHDARSVFD-----TNFI--NCGVN--------------------- 390
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
W +M+ G ++ +EALEL+ +M G+T D SV +A ++ +LQ+GR+VH
Sbjct: 391 --TPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVH 448
Query: 241 RFILQNNIT-QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
+L+ + V A+ D YSKCG LE+ F + + +D+V+WTT++ + LG
Sbjct: 449 GMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLG 508
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ---LFRRMGGVYRVQPTIEH 356
EAL F M +G PN+ TF SVL +C + G Q L + G + IE
Sbjct: 509 EEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAG--LDTEKCIES 566
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
L+D+ ++ G + +A + + D +S+ A++S
Sbjct: 567 --ALIDMYAKCGSITEAGKVFDKISNPD-IVSWTAIISG 602
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 114/414 (27%), Positives = 180/414 (43%), Gaps = 50/414 (12%)
Query: 3 KGLHAHVTKTAL-DSDIYV-GNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K +H V K+ D D+ V N H Y + + F A +FD+MP R+V SW ++
Sbjct: 138 KAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGST 197
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + F +++ GI+ DK + +C L+ L GK VH G +
Sbjct: 198 EHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIF 257
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +LL MYAK ++++ +F+ M + N VS
Sbjct: 258 VSTSLLNMYAKLGSIEDSYWVFNMM-TEHNQVS--------------------------- 289
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
W +M+ GC EA +LF +M + TP+ +VSV A L ++ G+ V
Sbjct: 290 ----WNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQ 345
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT--DCKDVVTWTTMIEGLANYGL 298
+ I + V TALIDMYSKCGSL +A F +C W MI G + G
Sbjct: 346 NCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGC 405
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EAL ++ QM + GI + T+ SV A S + Q R + G+ ++ ++ V
Sbjct: 406 SQEALELYVQMCQNGITSDLYTYCSVFNAIAAS----KSLQFGRVVHGMV-LKCGLDLMV 460
Query: 359 -----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
+ D S+ G L + M D +S+ L++A YS+ LG++
Sbjct: 461 VSVNNAIADAYSKCGFLEDVRKVFDRMEERD-IVSWTTLVTA---YSQSSLGEE 510
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNIT-QDAFVK-TALIDMYSKCGSLEEALVTFYK 277
++ VL C+ +++ + VH +L++N +D V +YSKC A F +
Sbjct: 121 LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDE 180
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
++V +WT MI G +GL + + F +M GI P++ + +++ +C + +
Sbjct: 181 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSC----IGLDS 236
Query: 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE--FIKIMPAEDKFISYKALLSA 395
+L + + ++ H LL+ L E+ ++ M E +S+ A++S
Sbjct: 237 LELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISG 296
Query: 396 CIT----YSEFDLGKKVANNMMKLGNQSHEAYVLLS 427
C + FDL + MK G + Y L+S
Sbjct: 297 CTSNGLHLEAFDLFVR-----MKNGACTPNMYTLVS 327
>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
Length = 588
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 256/462 (55%), Gaps = 7/462 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + KT + SD+++ N LI Y + AR +FD+MP RD S+N+++ Y
Sbjct: 115 GMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVK 174
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
G LF + E + + I+ + S A+ G + E L
Sbjct: 175 CGLIGSARELFDLMPKE--MKNLISWNSMISGYAQTSD---GVNIASKLFAEMPEKDLIS 229
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ Y K M++A LF M RR++V+ +I+GY + V A+ +FD++ +D
Sbjct: 230 WNSLIDGYVKHGRMEDAKDLFYVM-PRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRD 288
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V + SMM G V+ K EALE+F M E ++PDE +V VLSA + L L +H
Sbjct: 289 VVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMH 348
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I++ + ALIDMYSKCGS+++A++ F + + K + W MI GLA +GLG
Sbjct: 349 LYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGE 408
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A + ++ER+ IKP++ TFV +L AC HSGL+ EG F M ++++P ++H+ C+
Sbjct: 409 SAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 468
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+LSR+G + A+ I+ MP E + ++ L+AC + EF+ G+ VA +++ +
Sbjct: 469 VDILSRSGSIELAKNLIEEMPMEPNDVIWRTFLTACSHHKEFETGEVVAKHLILQAGYNP 528
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+YVLLSN YA G W + R MKE + +K PG S I+L
Sbjct: 529 SSYVLLSNMYASFGMWKDARRVRTMMKERELQKVPGCSWIEL 570
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 169/332 (50%), Gaps = 26/332 (7%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN ++ ++ D LI F ++ G+ DK +L ++ AC+RL + G +H +
Sbjct: 64 WNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFLR 123
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K G+ L ++N L+ +Y KC + A ++FD M +R+ VS N +I+GY+ L+ AR
Sbjct: 124 KTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRM-PQRDSVSYNSMIDGYVKCGLIGSAR 182
Query: 172 EVFDEIVD--KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
E+FD + K+++ W SM+ G Q + + + K+ E P+++++ + +S
Sbjct: 183 ELFDLMPKEMKNLISWNSMISG---YAQTSDGVNIASKLFAE--MPEKDLI-----SWNS 232
Query: 230 LSN--LQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
L + +++GR+ + + +D +ID Y+K G + +A F + +DVV +
Sbjct: 233 LIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAY 292
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
+M+ G EAL +F ME++ + P+E T V VL+A G +++ +
Sbjct: 293 NSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMH---- 348
Query: 346 GVYRVQPTI----EHFVCLVDLLSRAGLLYQA 373
+Y V+ + V L+D+ S+ G + QA
Sbjct: 349 -LYIVEKQFFLGGKLGVALIDMYSKCGSIQQA 379
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 8/206 (3%)
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D LW +++ P+ AL F M++ GV+ D+ + VL ACS L +Q G +
Sbjct: 59 EDPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQI 118
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H F+ + I D F++ LI +Y KCG L A F + +D V++ +MI+G GL
Sbjct: 119 HGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLI 178
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAA-CRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
A +F M ++ N ++ S+++ + S + +LF M + + +
Sbjct: 179 GSARELFDLMPKE--MKNLISWNSMISGYAQTSDGVNIASKLFAEMP-----EKDLISWN 231
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAED 384
L+D + G + A++ +MP D
Sbjct: 232 SLIDGYVKHGRMEDAKDLFYVMPRRD 257
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 15/163 (9%)
Query: 242 FILQNNITQD-----AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
FI +N+T A + + +++C +F + +D W +I+ ++
Sbjct: 15 FIXNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVEDPFLWNAVIKSHSHG 74
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL--FRRMGGVYRVQPTI 354
AL F M G+ ++ + VL AC G + EG Q+ F R G++
Sbjct: 75 VDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFLRKTGIWS----- 129
Query: 355 EHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ F+ CL+ L + G L A + MP D +SY +++
Sbjct: 130 DLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDS-VSYNSMIDG 171
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 162/497 (32%), Positives = 260/497 (52%), Gaps = 40/497 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF--YGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K +HA + L S++ V LI+ A LFD++P DV N ++
Sbjct: 29 KQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSA 88
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + L+ ++ G+ D+ T + AC++LE G H + G
Sbjct: 89 QSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEY 148
Query: 121 MENALLLMYAKCKEM-------------------------------DEALRLFDEMGSRR 149
++NAL+L +A C ++ DEA+RLFDEM +
Sbjct: 149 VKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEM-PYK 207
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+ V+ N++I G + + +D ARE+FD +KD+V W +M+ G V P+EAL +FK+M
Sbjct: 208 DQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMR 267
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKT----ALIDMYSK 264
D G PD ++S+LSAC+ L +L+ G+ +H +IL+ +++ +V T ALIDMY+K
Sbjct: 268 DAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAK 327
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
CGS++ A+ F +D+ TW T+I GLA + ++ +F +M+R + PNE TF+ V
Sbjct: 328 CGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHH-AEGSIEMFEEMQRLKVWPNEVTFIGV 386
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
+ AC HSG + EG + F M +Y ++P I+H+ C+VD+L RAG L +A F++ M E
Sbjct: 387 ILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEP 446
Query: 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444
I ++ LL AC Y +LGK ++ + YVLLSN YA G W V + R+
Sbjct: 447 NAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRK 506
Query: 445 NMKELQTRKKPGNSIID 461
+ + +K G S+I+
Sbjct: 507 MFDDTRVKKPTGVSLIE 523
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 159/422 (37%), Gaps = 105/422 (24%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHF-------------------------------YGR 30
G H V + + YV N+LI F Y +
Sbjct: 131 GFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAK 190
Query: 31 MALFTDARVLFDKMPF-------------------------------RDVGSWNTLMSIY 59
+A LFD+MP+ +DV +WN ++S Y
Sbjct: 191 RGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGY 250
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCY-----ATKVG 114
+ E L +FK++ G D +T++ L SACA L L GK +H Y +
Sbjct: 251 VNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSS 310
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF 174
+ + NAL+ MYAKC +D A+ EVF
Sbjct: 311 IYVGTPIWNALIDMYAKCGSIDRAI--------------------------------EVF 338
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
+ D+D+ W +++ G + E ++E+F++M V P+E + V+ ACS +
Sbjct: 339 RGVKDRDLSTWNTLIVG-LALHHAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVD 397
Query: 235 YGRLVHRFILQ-NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEG 292
GR + NI + ++DM + G LEEA + + + + W T++
Sbjct: 398 EGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGA 457
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV-Q 351
Y GN L + + ++ +E+ +L+ S +G Q R+M RV +
Sbjct: 458 CKIY--GNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKK 515
Query: 352 PT 353
PT
Sbjct: 516 PT 517
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 253/463 (54%), Gaps = 2/463 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ ++ + + ++ + + ++L+ Y + A+ LFD+ ++ N + S Y
Sbjct: 254 GEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVR 313
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L + ++ GI D+I+++ S+C++L + +GK+ H Y + G E N+
Sbjct: 314 QGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI 373
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC D A R+FD M S + +V+ N ++ GYI+ VD A E F+ + +K+
Sbjct: 374 CNALIDMYMKCHRQDTAFRIFDRM-SNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKN 432
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
IV W +++ V+ EEA+E+F M E V D M+S+ SAC L L + ++
Sbjct: 433 IVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIY 492
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I +N I D + T L+DM+S+CG E A+ F +DV WT I +A G
Sbjct: 493 YYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVE 552
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ +F +M +G+KP+ F+ L AC H GL+ +G ++F M ++ V P H+ C+
Sbjct: 553 RAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCM 612
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A + IK MP E + + +LL+AC ++ A + L +
Sbjct: 613 VDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERT 672
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+YVLLSN YA G W ++A+ R +MKE RK PG S+I ++
Sbjct: 673 GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIR 715
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 113/401 (28%), Positives = 186/401 (46%), Gaps = 68/401 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G +H + K D++V NSL+HFY AR +FD+M R+V SW +++ Y
Sbjct: 152 GIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYAR 211
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+F+ V + F+ + E ++ + +T+V + SACA+LE L G+ V+ + G+E
Sbjct: 212 REFAKDA-VDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVND 270
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
M +AL+ MY KC +D A RLFDE G+ N+ N + + Y+ L
Sbjct: 271 LMISALVDMYMKCNAIDIAKRLFDEYGA-SNLDLCNAMASNYVRQGLT------------ 317
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+EAL + M+D G+ PD M+S +S+CS L N+ +G+
Sbjct: 318 -------------------KEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSC 358
Query: 240 HRFILQNNITQDAFVKTALIDMYSKC-------------------------------GSL 268
H ++L+N + ALIDMY KC G +
Sbjct: 359 HGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEV 418
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME-RKGIKPNEATFVSVLAA 327
+ A TF K++V+W T+I L + EA+ VF+ M+ ++ + + T +S+ +A
Sbjct: 419 DAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASA 478
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
C H G + ++ + R+Q + LVD+ SR G
Sbjct: 479 CGHLGALDLAKWIYYYIEK-NRIQLDVRLGTTLVDMFSRCG 518
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 156/335 (46%), Gaps = 41/335 (12%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM---SIY 59
K H +TK LD D+ L+ L T + F K F + S+ T S+
Sbjct: 48 KMFHLSLTKQGLDDDVSAITKLVA--RSCELGTRESLSFAKEVFENGESYGTCFMYNSLI 105
Query: 60 NDFSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
++ SG E ++LF +++ GI DK T S CA+ G +H K+
Sbjct: 106 RGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYA 165
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
L ++N+L+ YA+C E+D AR+VFDE
Sbjct: 166 KDLFVQNSLVHFYAECGELD--------------------------------CARKVFDE 193
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI-DEGVTPDEEVMVSVLSACSSLSNLQY 235
+ ++++V W SM+ G + + ++A++LF +M+ DE V P+ MV V+SAC+ L +L+
Sbjct: 194 MSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLET 253
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G V+ FI + I + + +AL+DMY KC +++ A F + ++ M
Sbjct: 254 GEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVR 313
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
GL EAL V M GI+P+ + +S +++C
Sbjct: 314 QGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQ 348
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 121/239 (50%), Gaps = 11/239 (4%)
Query: 100 LHYGKTVHCYAT-KVGLEYMLNMENALLLMYAKCKEMDEALRLF----DEMGSRRNIVSL 154
LH+ V +T K L A CK +DE L++F + G ++ ++
Sbjct: 8 LHFSPMVLAISTSKPSLPNQSKRTKATPSSLKNCKTIDE-LKMFHLSLTKQGLDDDVSAI 66
Query: 155 NILINGYIDM---ELVDLAREVFDEIVD-KDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
L+ ++ E + A+EVF+ ++ S++ G + +EA+ LF +M++
Sbjct: 67 TKLVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMN 126
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G++PD+ LS C+ + G +H I++ + +D FV+ +L+ Y++CG L+
Sbjct: 127 SGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDC 186
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER-KGIKPNEATFVSVLAAC 328
A F + ++VV+WT+MI G A +A+ +F++M R + + PN T V V++AC
Sbjct: 187 ARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISAC 245
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 71/159 (44%), Gaps = 1/159 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K ++ ++ K + D+ +G +L+ + R A +F+ + RDV +W +
Sbjct: 487 LAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMA 546
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
+ + LF ++I +G+ D + + +AC + GK + K+ G+
Sbjct: 547 MAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPED 606
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
++ + + ++EAL+L +M + N V N L+
Sbjct: 607 VHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLL 645
>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 165/500 (33%), Positives = 258/500 (51%), Gaps = 38/500 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP---------------- 45
GK +H + L D V +SL+H Y + DAR +FDK+P
Sbjct: 93 GKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFAR 152
Query: 46 -------------FRDVG------SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKIT 86
RD+G SWN ++S +N + +++F+ + EG+ D +
Sbjct: 153 KGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTS 212
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+ + A L+ G +HCY K GL + +AL+ MY KC E +F+EM
Sbjct: 213 VSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEM- 271
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEI--VDKDIVLWRSMMHGCVKAKQPEEALEL 204
++ + N L+ G LVD A EVF + +D ++V W SM+ C + + EALEL
Sbjct: 272 DEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALEL 331
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
F++M EGV P+ + +L AC +++ L +G+ H F L+N I D +V +ALIDMY+K
Sbjct: 332 FREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAK 391
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
CG + + + F +++V+W +++ G A +G EA+ +F M+R G KP+ +F V
Sbjct: 392 CGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCV 451
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
L+AC GL EG F M + V+ +EH+ C+V LL R+G L +A IK MP E
Sbjct: 452 LSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEP 511
Query: 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444
+ ALLS+C ++ DLG+ A + +L ++ Y+LLSN YA + W EV R
Sbjct: 512 DSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRD 571
Query: 445 NMKELQTRKKPGNSIIDLKH 464
M+ +K PG S I++K+
Sbjct: 572 MMRSRGLKKNPGYSWIEIKN 591
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 158/310 (50%), Gaps = 8/310 (2%)
Query: 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
+ I++ + G V+ +F ++ +GIV D L + CA L L GK +HC+A GL
Sbjct: 46 IQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGL 105
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF- 174
+ ++LL MY + + +A +FD++ + +V+ + LI+ + V +E+F
Sbjct: 106 GLDSVVLSSLLHMYVQFDHLKDARNVFDKL-PQPGVVTSSALISRFARKGRVKETKELFY 164
Query: 175 ---DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
D V+ ++V W M+ G ++ +A+ +F+ M EG+ PD + SVL A L
Sbjct: 165 QTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLD 224
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
G +H ++++ + D FV +ALIDMY KC E F + D DV ++
Sbjct: 225 MPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVT 284
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
GL+ GL + AL VF Q KG+ N ++ S++A+C +G E +LFR M + V+
Sbjct: 285 GLSRNGLVDNALEVFKQF--KGMDLNVVSWTSMIASCSQNGKDMEALELFREM-QIEGVK 341
Query: 352 PTIEHFVCLV 361
P CL+
Sbjct: 342 PNSVTIPCLL 351
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 148/350 (42%), Gaps = 70/350 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
MG +H +V K L D +V ++LI YG+ A ++ +F++M DVG+ N L++
Sbjct: 228 MGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLS 287
Query: 58 ----------IYNDF-----------------SDSG---EVLILFKQLIFEGIVADKITL 87
++ F S +G E L LF+++ EG+ + +T+
Sbjct: 288 RNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTI 347
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
L AC + L +GK HC++ + G+ + + +AL+ MYAKC M + FD M
Sbjct: 348 PCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMM-P 406
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
RN+VS N L+ GY MHG + EA+ +F+
Sbjct: 407 NRNLVSWNSLMAGY--------------------------AMHG-----KTFEAINIFEL 435
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK-TALIDMYSKCG 266
M G PD VLSAC+ + G + +N+ + + ++ + + G
Sbjct: 436 MQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSG 495
Query: 267 SLEEALVTFYKTDCK-DVVTWTTMIEGLANYG---LGNEALRVFYQMERK 312
LEEA + + D W ++ + LG A + +++E +
Sbjct: 496 RLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPR 545
>gi|449522919|ref|XP_004168473.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like, partial [Cucumis sativus]
Length = 670
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 158/461 (34%), Positives = 247/461 (53%), Gaps = 33/461 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H V + D V +LI Y + AR +F+ MP R++ SWN ++S Y
Sbjct: 242 GKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQ 301
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF++LI + + D T+V L C+R L GK +H + + GL+ L +
Sbjct: 302 NGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVL 361
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
A++ +YAKC + A VF+ + +K+
Sbjct: 362 PTAIVDLYAKCGSLA--------------------------------YASSVFERMKNKN 389
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W +M+ G + +AL+LF +M +E VT + +VS++ C+ L L+ GR VH
Sbjct: 390 VISWTAMLVGLAQNGHARDALKLFDQMQNERVTFNALTLVSLVYCCTLLGLLREGRSVHA 449
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGN 300
+ + + + V TALIDMY+KC + A + F Y KDV+ + +MI G +GLG+
Sbjct: 450 TLTRFHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDVILYNSMISGYGMHGLGH 509
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL V+++M R+G++PNE+TFVS+L+AC HSGL+ EG LF+ M + PT + + C+
Sbjct: 510 KALCVYHRMNREGLQPNESTFVSLLSACSHSGLVEEGIALFQNMVKDHNTTPTDKLYACI 569
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLLSRAG L QAEE I MP + LL+ C+ + + +LG K+A+ ++ L +++
Sbjct: 570 VDLLSRAGRLRQAEELINQMPFTPTSGILETLLNGCLLHKDIELGVKLADRLLSLESRNP 629
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
Y+ LSN YA W V R M E + +K PG S I+
Sbjct: 630 SIYITLSNIYAKASRWDSVKYVRGLMMEQEIKKIPGYSSIE 670
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 170/355 (47%), Gaps = 39/355 (10%)
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
LF +++ I +T++ L +C + L +GK +H + G+ + L+ MY
Sbjct: 210 LFLDMLYNKIEPSAVTMISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMYC 269
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
K +++ A +F+ M S RN+VS N++I+GY+ L+
Sbjct: 270 KSGDVESARWIFENMPS-RNLVSWNVMISGYVQNGLL----------------------- 305
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
E L LF+K+I + V D +VS++ CS ++L G+++H FI + +
Sbjct: 306 --------VETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDL 357
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
+ + TA++D+Y+KCGSL A F + K+V++WT M+ GLA G +AL++F QM+
Sbjct: 358 NLVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQ 417
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370
+ + N T VS++ C GL+ EG + + + + L+D+ ++ +
Sbjct: 418 NERVTFNALTLVSLVYCCTLLGLLREGRSVHATLTRFHFASEVVV-MTALIDMYAKCSKI 476
Query: 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK---VANNMMKLGNQSHEA 422
AE K I Y +++S Y LG K V + M + G Q +E+
Sbjct: 477 NSAEMVFKYGLTPKDVILYNSMISG---YGMHGLGHKALCVYHRMNREGLQPNES 528
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 10/199 (5%)
Query: 199 EEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTAL 258
E LF M+ + P M+S++ +C + NL +G+ +H F+L +++D V T L
Sbjct: 205 REGYNLFLDMLYNKIEPSAVTMISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTTL 264
Query: 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
IDMY K G +E A F +++V+W MI G GL E LR+F ++ + +
Sbjct: 265 IDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDVGFDS 324
Query: 319 ATFVSVLAACRHSGLITEGCQL----FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
T VS++ C + + G L +RR + V PT +VDL ++ G L A
Sbjct: 325 GTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPT-----AIVDLYAKCGSLAYAS 379
Query: 375 EFIKIMPAEDKFISYKALL 393
+ M ++ IS+ A+L
Sbjct: 380 SVFERMKNKN-VISWTAML 397
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 47/240 (19%), Positives = 95/240 (39%), Gaps = 37/240 (15%)
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
L+ Y + ++ AR+VFDEI VL +M++G ++ ++ + +EL K M + D
Sbjct: 95 LVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCIELLKMMSRCHLEFD 154
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
L AC L + + G V + + F+ +++++
Sbjct: 155 SYTCNFALKACMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSILNFLE------------- 201
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
GL E +F M I+P+ T +S++ +C +T
Sbjct: 202 --------------------GLFREGYNLFLDMLYNKIEPSAVTMISLIQSCGEMRNLTF 241
Query: 337 G-CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
G C +G + + L+D+ ++G + A + MP+ + +S+ ++S
Sbjct: 242 GKCMHGFVLG--FGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRN-LVSWNVMISG 298
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 163/444 (36%), Positives = 263/444 (59%), Gaps = 19/444 (4%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLI---LFKQLIF-EGIVADKITLVILFS 92
A +F++MP R+ SWNT++ +++ SD + LI LF +++ E I ++ T +
Sbjct: 71 AHKIFNQMPQRNCFSWNTIIRGFSE-SDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLK 129
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE-------- 144
ACA+ K+ GK +H A K G + + L+ MY C M +A LF +
Sbjct: 130 ACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMV 189
Query: 145 -MGSRRN----IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
M RR +V N++I+GY+ + AR +FD++ + +V W +M+ G + +
Sbjct: 190 MMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFK 249
Query: 200 EALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTAL 258
+A+E+F++M E + P+ +VSVL A S L +L+ G +H + + I D + +AL
Sbjct: 250 DAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSAL 309
Query: 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
IDMYSKCG +E+A++ F + ++V+TW+ MI G A +G +A+ F +M + G++P++
Sbjct: 310 IDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSD 369
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
++++L AC H+GL+ EG + F +M V ++P IEH+ C+VDLL R GLL +AEEFI
Sbjct: 370 VAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFIL 429
Query: 379 IMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438
MP + + +KALL AC + ++GK+VAN +M + AYV LSN YA +G+W+E
Sbjct: 430 NMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSE 489
Query: 439 VAEARRNMKELQTRKKPGNSIIDL 462
V+E R MKE+ RK PG S ID+
Sbjct: 490 VSEMRLRMKEMDIRKDPGCSWIDI 513
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 144/305 (47%), Gaps = 50/305 (16%)
Query: 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND---FSDS 65
+ + D ++ + N +I Y R+ AR+LFDKM R V SWNT++S Y+ F D+
Sbjct: 192 IDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDA 251
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
EV K+ E I + +TLV + A +RL L G+ +H YA G+ + +AL
Sbjct: 252 VEVFREMKK--GEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSAL 309
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING------------------------- 160
+ MY+KC +++A+ +F+ + R N+++ + +ING
Sbjct: 310 IDMYSKCGIIEKAIMVFERL-PRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPS 368
Query: 161 ---YIDM-------ELVDLAREVFDEIVDKDIVLWRSMMHGCV-----KAKQPEEALELF 205
YI++ LV+ R F ++V D + R +GC+ + +EA E
Sbjct: 369 DVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFI 428
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
M + PD+ + ++L AC N++ G+ V IL + + D+ AL +MY+
Sbjct: 429 LNM---PIKPDDVIWKALLGACRMHRNVEMGKRVAN-ILMDMVPHDSGAYVALSNMYASQ 484
Query: 266 GSLEE 270
G+ E
Sbjct: 485 GNWSE 489
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/104 (19%), Positives = 54/104 (51%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH + + + D +G++LI Y + + A ++F+++P +V +W+ +++ +
Sbjct: 286 LGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFA 345
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
+G+ + F ++ G+ + + L +AC+ + G+
Sbjct: 346 IHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGR 389
>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 152/465 (32%), Positives = 245/465 (52%), Gaps = 34/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + K D D +V L+ Y + DAR +FD MP RD+ WN L+S +
Sbjct: 324 LGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCS 383
Query: 61 DFSDSGEVLILFKQLIFEGIVAD--KITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
GEVL LF ++ EG+ D + TL + + A E + + + VH A K+GL
Sbjct: 384 HDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSD 443
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ N L+ Y KC ++D A++ VF E
Sbjct: 444 SHVINGLIDSYWKCGQLDYAIK--------------------------------VFKESR 471
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
DI+ +MM + E+A++LF +M+ +G+ PD V+ S+L+AC+SLS + G+
Sbjct: 472 SDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQ 531
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH +++ T D F AL+ Y+KCGS+E+A + F + +V+W+ MI GLA +G
Sbjct: 532 VHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGH 591
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G AL +F++M +G+ PN T SVL+AC H+GL+ + + F M + + T EH+
Sbjct: 592 GKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYA 651
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C++D+L RAG L A E + MP + + ALL A + + +LG+ A + L +
Sbjct: 652 CMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPE 711
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLL+N YA G W E+A+ R+ MK+ +K+P S +++K
Sbjct: 712 KSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIK 756
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 117/401 (29%), Positives = 190/401 (47%), Gaps = 47/401 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH+H+ K+ L + N L+ Y R L + AR +FD++P SW++L++ Y++
Sbjct: 23 GAHLHSHLLKSGLLAGF--SNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSN 80
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L+ F+ + G+ ++ L ++ CA + +G VH A L + + +
Sbjct: 81 NGMPRDALLAFRAMRGRGVPCNEFALPVVLK-CA--PDVRFGAQVHALAVATRLVHDVFV 137
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV--- 178
NAL+ +Y +VD AR +FDE V
Sbjct: 138 ANALVAVYGG--------------------------------FGMVDEARRMFDEYVGVG 165
Query: 179 -DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+++ V W +M+ VK Q +A+ +F++M+ G P+E V++AC+ +L+ GR
Sbjct: 166 GERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGR 225
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH +++ +D F AL+DMYSK G +E A F K DVV+W I G +G
Sbjct: 226 QVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHG 285
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+ AL + QM+ G+ PN T SVL AC +G G Q+ G + + + F
Sbjct: 286 HDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIH---GFMVKAVADFDEF 342
Query: 358 VC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
V LVD+ ++ G L A + MP D I + AL+S C
Sbjct: 343 VAVGLVDMYAKHGFLDDARKVFDFMPRRD-LILWNALISGC 382
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 182/398 (45%), Gaps = 40/398 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V +T + D++ N+L+ Y ++ A +F+KMP DV SWN +S
Sbjct: 224 GRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVT 283
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L L Q+ G+V + TL + ACA + G+ +H + K ++ +
Sbjct: 284 HGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFV 343
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
L+ MYAK +D+A ++FD M R D
Sbjct: 344 AVGLVDMYAKHGFLDDARKVFDFMPRR--------------------------------D 371
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD--EEVMVSVLSACSSLSNLQYGRLV 239
++LW +++ GC + E L LF +M EG+ D + SVL + +S + + R V
Sbjct: 372 LILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQV 431
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + + D+ V LID Y KCG L+ A+ F ++ D+++ TTM+ L+ G
Sbjct: 432 HALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHG 491
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV- 358
+A+++F QM RKG++P+ S+L AC +G Q+ + + Q T + F
Sbjct: 492 EDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHL---IKRQFTSDVFAG 548
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
LV ++ G + A+ +P E +S+ A++
Sbjct: 549 NALVYAYAKCGSIEDADMAFSGLP-ERGIVSWSAMIGG 585
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 161/345 (46%), Gaps = 38/345 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM----PFRDVGSWNTLMS 57
G +HA T L D++V N+L+ YG + +AR +FD+ R+ SWNT++S
Sbjct: 119 GAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMIS 178
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y SG+ + +F+++++ G ++ + +AC L G+ VH + G E
Sbjct: 179 AYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEK 238
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ NAL+ MY+K + +++A VF+++
Sbjct: 239 DVFTANALVDMYSKLGD--------------------------------IEMAATVFEKM 266
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
D+V W + + GCV ALEL +M G+ P+ + SVL AC+ GR
Sbjct: 267 PAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGR 326
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H F+++ D FV L+DMY+K G L++A F +D++ W +I G ++ G
Sbjct: 327 QIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDG 386
Query: 298 LGNEALRVFYQMERKG--IKPNEATFVSVLAACRHSGLITEGCQL 340
E L +F++M ++G + N T SVL + S I Q+
Sbjct: 387 RHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQV 431
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 135/319 (42%), Gaps = 50/319 (15%)
Query: 92 SACARL---EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
SA AR L G +H + K GL + N LL +Y++C+
Sbjct: 9 SALARFGTSRSLFAGAHLHSHLLKSGL--LAGFSNHLLTLYSRCR--------------- 51
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
L AR VFDEI D V W S++ P +AL F+ M
Sbjct: 52 -----------------LPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAM 94
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
GV P E + V+ C+ ++++G VH + + D FV AL+ +Y G +
Sbjct: 95 RGRGV-PCNEFALPVVLKCA--PDVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMV 151
Query: 269 EEALVTFYK----TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
+EA F + ++ V+W TMI +A+ VF +M G +PNE F V
Sbjct: 152 DEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCV 211
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPA 382
+ AC S + G Q+ G V R + F LVD+ S+ G + A + MPA
Sbjct: 212 VNACTGSRDLEAGRQVH---GAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPA 268
Query: 383 EDKFISYKALLSACITYSE 401
D +S+ A +S C+T+
Sbjct: 269 AD-VVSWNAFISGCVTHGH 286
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 121/286 (42%), Gaps = 19/286 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HAH+ K SD++ GN+L++ Y + DA + F +P R + SW+ ++
Sbjct: 529 GKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQ 588
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-VHCYATKVGLEYMLN 120
L LF +++ EG+ + ITL + SAC + K G++
Sbjct: 589 HGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEE 648
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAREVFDEI 177
++ + + ++++A+ L + M + N L+ + D EL +A E +
Sbjct: 649 HYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTL 708
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+ + + A +E ++ K M D V + ++S ++
Sbjct: 709 EPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEP-----------AMSWVEIKD 757
Query: 238 LVHRFILQNN---ITQDAFVKTA-LIDMYSKCGSLEEALVTFYKTD 279
VH FI+ + +T+D + K A L D+ +K G + V + D
Sbjct: 758 KVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVD 803
>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 843
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 153/463 (33%), Positives = 247/463 (53%), Gaps = 32/463 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH ++ + + D+++ ++L+ Y + A+ ++D DV +T++S Y
Sbjct: 367 GKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E + +F+ L+ +GI + + + + ACA + + G+ +H YA K E +
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYV 486
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
E+AL+ MYAKC +D L+ +F +I KD
Sbjct: 487 ESALMDMYAKCGRLD--------------------------------LSHYIFSKISAKD 514
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W SM+ + +PEEAL LF++M EGV + SVLSAC+SL + YG+ +H
Sbjct: 515 EVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHG 574
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+++ I D F ++ALIDMY KCG+LE A F K+ V+W ++I YGL E
Sbjct: 575 VVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKE 634
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
++ + M+ +G K + TF+++++AC H+G + EG +LFR M Y++ P +EHF C+V
Sbjct: 635 SVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMV 694
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL SRAG L +A E I MP + + ALL AC + +L + + + KL +
Sbjct: 695 DLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSG 754
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVL+SN A+ G W V++ RR MK+ + +K PG S +D+ +
Sbjct: 755 YYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNN 797
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 139/517 (26%), Positives = 232/517 (44%), Gaps = 81/517 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H LD D++VG++LI Y L DAR +FD M RD WN +M Y
Sbjct: 164 LGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYV 223
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ LF + G + TL S A L +G +H A K GLE +
Sbjct: 224 KAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVA 283
Query: 121 MENALLLMYAKCKEM-------------------------------DEALRLFDEM---G 146
+ N L+ MYAKCK + D+AL LF +M G
Sbjct: 284 VANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSG 343
Query: 147 SR------------------------------RNIVSLNI-----LINGYIDMELVDLAR 171
R RN V +++ L++ Y V +A+
Sbjct: 344 IRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQ 403
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
V+D D+V+ +M+ G V +EA+++F+ ++++G+ P+ + SVL AC+S++
Sbjct: 404 SVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMA 463
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
++ G+ +H + L+N +V++AL+DMY+KCG L+ + F K KD VTW +MI
Sbjct: 464 AMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMIS 523
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
A G EAL +F +M +G+K + T SVL+AC I G + + GV
Sbjct: 524 SFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYG----KEIHGVVIKG 579
Query: 352 PTIEHFV---CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
P L+D+ + G L A + MP +++ +S+ ++++ +Y + L K+
Sbjct: 580 PIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNE-VSWNSIIA---SYGAYGLVKES 635
Query: 409 ANNMMKLGNQSHEA-YVLLSNFYALEGHWTEVAEARR 444
+ + + + +A +V + H +V E R
Sbjct: 636 VSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLR 672
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 144/329 (43%), Gaps = 45/329 (13%)
Query: 4 GLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVG---SWNTLMSIYN 60
GLHA T TAL + L+ Y F DA +F +P WN L+
Sbjct: 69 GLHA--TDTALQT------RLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLT 120
Query: 61 DFSDSGEVLILFKQLIF--EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
D L+ + ++ + D T + +CA L + G+ VH A +GL+
Sbjct: 121 MAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGD 180
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + +AL+ MYA + +A ++FD M + R+ V N++++GY
Sbjct: 181 MFVGSALIKMYANGGLLWDARQVFDGM-AERDCVLWNVMMDGY----------------- 222
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
VKA A+ELF M G P+ + LS ++ S+L +G
Sbjct: 223 --------------VKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQ 268
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++ + + V L+ MY+KC L++ F D+VTW MI G G
Sbjct: 269 LHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGF 328
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAA 327
++AL +F M++ GI+P+ T VS+L A
Sbjct: 329 VDQALLLFCDMQKSGIRPDSVTLVSLLPA 357
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 114/215 (53%), Gaps = 5/215 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH++ K A + YV ++L+ Y + + +F K+ +D +WN+++S +
Sbjct: 467 LGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFA 526
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L LF+++ EG+ +T+ + SACA L ++YGK +H K + L
Sbjct: 527 QNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLF 586
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY----IDMELVDLAREVFDE 176
E+AL+ MY KC ++ A R+F+ M +N VS N +I Y + E V L R + +E
Sbjct: 587 AESALIDMYGKCGNLEWAHRVFESM-PEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEE 645
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
D V + +++ C A Q +E L LF+ M +E
Sbjct: 646 GFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEE 680
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 126/333 (37%), Gaps = 34/333 (10%)
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYM-LNMENALLLMYAKCKEMDEALRLFDEM 145
L+ + C L G VH A GL ++ L+ MY + +A+ +F +
Sbjct: 42 LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
+L W ++ G A AL +
Sbjct: 102 PRGAAACALP-----------------------------WNWLIRGLTMAGDYRSALLFY 132
Query: 206 KKMI--DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
KM PD V+ +C++L + GRLVHR + D FV +ALI MY+
Sbjct: 133 LKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYA 192
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
G L +A F +D V W M++G G + A+ +F M G +PN AT
Sbjct: 193 NGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLAC 252
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
L+ + G QL + Y ++ + LV + ++ L + +MP +
Sbjct: 253 FLSVSATESDLFFGVQL-HTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRD 311
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
D +++ ++S C+ D + +M K G
Sbjct: 312 D-LVTWNGMISGCVQNGFVDQALLLFCDMQKSG 343
>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 152/461 (32%), Positives = 243/461 (52%), Gaps = 32/461 (6%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ LH + + + + N+ I Y + A +F M + V SWN ++ +
Sbjct: 436 RALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQN 495
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
D + L + ++ GI+ D ++V L AC RL L YGK +H + + GLE +
Sbjct: 496 GDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVA 555
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
+LL +Y C + F+ MG DK+
Sbjct: 556 VSLLSLYFHCSKPFYGRTYFERMG--------------------------------DKNS 583
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +M+ G + + P EAL LF++M+ +G+ PDE + S+L ACS LS L G+ VH F
Sbjct: 584 VCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCF 643
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
L+N++ +D FV +L+DMY+K G L + F + + K+V +W MI G +G GN+A
Sbjct: 644 ALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKA 703
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
+ +F M+R +P+ TF+ VL AC H+GL++EG +M +Y+++P +EH+ C++D
Sbjct: 704 VELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVID 763
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
+L RAG L +A FI MP E + +LLS+ ITY + ++G+K A ++ L ++
Sbjct: 764 MLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADS 823
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+LLSN YA G W V R+ MK+L +K G S I+L+
Sbjct: 824 YILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELR 864
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 114/372 (30%), Positives = 181/372 (48%), Gaps = 46/372 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H K L D++VGN++I YG+ +A LFDKMP +++ SWN+L+
Sbjct: 228 LGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLI---R 284
Query: 61 DFSDSG---EVLILFKQLI--FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
FS++G E F+ L+ +G++ D T+V L C+ + G +H A K+GL
Sbjct: 285 GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGL 344
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ L + NAL+ MY+KC + EA LF
Sbjct: 345 VHELMVCNALIDMYSKCGCLSEAAILF--------------------------------R 372
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI--DEGVTPDEEVMVSVLSACSSLSNL 233
+I +K +V W SM+ + E +L +KM +E + +E ++++L AC S L
Sbjct: 373 KIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESEL 432
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
R +H + L+++ + A I Y+KCGSL A F+ + K V +W +I G
Sbjct: 433 LSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGH 492
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A G +AL +++M R GI P++ + VS+L AC GL+ G ++ G V R
Sbjct: 493 AQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIH---GFVLRNGLE 549
Query: 354 IEHFVCLVDLLS 365
+ FV V LLS
Sbjct: 550 MNSFVA-VSLLS 560
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 154/332 (46%), Gaps = 34/332 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H K L ++ V N+LI Y + ++A +LF K+ + V SWN+++ Y+
Sbjct: 331 VGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYS 390
Query: 61 DFSDSGEVLILFKQLIFEG--IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
E L +++ E + +++T++ L AC +L + +H Y+ + +Y
Sbjct: 391 REGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYK 450
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ NA + YAKC + A VF +
Sbjct: 451 ELINNAFIAAYAKCGSLV--------------------------------FAEHVFFGMN 478
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K + W +++ G + P +AL+ + +M G+ PD+ +VS+L AC L LQYG+
Sbjct: 479 TKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKE 538
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H F+L+N + ++FV +L+ +Y C F + K+ V W M+ G + L
Sbjct: 539 IHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNEL 598
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
NEAL +F QM G++P+E S+L AC
Sbjct: 599 PNEALSLFRQMLSDGLEPDEIAIASILGACSQ 630
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 156/324 (48%), Gaps = 41/324 (12%)
Query: 12 TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY--NDFSDSGEVL 69
+ D + LI Y ++R++FD++ +++ WN L+S Y N+ D E +
Sbjct: 137 SQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYD--EAI 194
Query: 70 ILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
F +LI D T L AC +H GK+VH A K+GL L + NA++ +
Sbjct: 195 HTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIAL 254
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
Y KC +DEA+ LFD+M +N++S N LI G+ + W
Sbjct: 255 YGKCGFLDEAVELFDKM-PEQNLISWNSLIRGF------------------SENGFWL-- 293
Query: 189 MHGCVKAKQPEEALELFKKMID--EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
EA F+ +++ +G+ PD MV++L CS N+ G ++H ++
Sbjct: 294 -----------EAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKL 342
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ + V ALIDMYSKCG L EA + F K + K VV+W +MI + G E +
Sbjct: 343 GLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLL 402
Query: 307 YQ--MERKGIKPNEATFVSVLAAC 328
+ ME + ++ NE T +++L AC
Sbjct: 403 RKMWMEEELMEVNEVTILNLLPAC 426
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 127/249 (51%), Gaps = 15/249 (6%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACS 228
+R VFD +++K++ W +++ G V+ + +EA+ F ++I PD ++ AC+
Sbjct: 162 SRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACT 221
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
++ G+ VH ++ + D FV A+I +Y KCG L+EA+ F K +++++W +
Sbjct: 222 GKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNS 281
Query: 289 MIEGLANYGLGNEALRVFYQM--ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
+I G + G EA R F + G+ P+ AT V++L C G + G + G
Sbjct: 282 LIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIH---GM 338
Query: 347 VYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDK-FISYKALLSA----CITY 399
++ E VC L+D+ S+ G L +A I E+K +S+ +++ A +
Sbjct: 339 AVKLGLVHELMVCNALIDMYSKCGCLSEAA--ILFRKIENKSVVSWNSMIGAYSREGFVF 396
Query: 400 SEFDLGKKV 408
FDL +K+
Sbjct: 397 ETFDLLRKM 405
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 123/276 (44%), Gaps = 41/276 (14%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H V + L+ + +V SL+ Y + R F++M ++ WN ++S Y+
Sbjct: 536 GKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQ 595
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF+Q++ +G+ D+I + + AC++L L GK VHC+A K L +
Sbjct: 596 NELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFV 655
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MYAK + + R+F+ + + + S N++I G+
Sbjct: 656 ACSLMDMYAKSGFLGHSQRIFNRLNGKE-VASWNVMITGF-------------------- 694
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG----- 236
+HG Q +A+ELF+ M PD + VL AC + G
Sbjct: 695 ------GVHG-----QGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLA 743
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
++ + L+ + A V IDM + G L EAL
Sbjct: 744 QMQTLYKLEPELEHYACV----IDMLGRAGRLNEAL 775
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 8/181 (4%)
Query: 217 EEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
+E M +L C N++ GR L + + + D + T LI MYS CG E+ + F
Sbjct: 107 KEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVF 166
Query: 276 YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLI 334
+ K++ W ++ G L +EA+ F ++ +P+ TF ++ AC I
Sbjct: 167 DRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDI 226
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392
G + G ++ ++ FV ++ L + G L +A E MP E IS+ +L
Sbjct: 227 HLGKSVH---GMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMP-EQNLISWNSL 282
Query: 393 L 393
+
Sbjct: 283 I 283
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H K +L D +V SL+ Y + ++ +F+++ ++V SWN +++ +
Sbjct: 636 LGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFG 695
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLE 116
+ + LF+ + D+ T + + AC E L+Y + T LE
Sbjct: 696 VHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQ---TLYKLE 752
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEM 145
L ++ M + ++EAL +EM
Sbjct: 753 PELEHYACVIDMLGRAGRLNEALNFINEM 781
>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 566
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 151/468 (32%), Positives = 250/468 (53%), Gaps = 39/468 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +H + K L+ +++VG++L++ Y ++ DA +F+++P RDV WN +++ Y
Sbjct: 94 RKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKI 153
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ +++FK++ EGI + T + S + ++ G+ +H TK+G + +
Sbjct: 154 GHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVS 213
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
NAL+ MY KCK ++AL +F+ +IN +KD+
Sbjct: 214 NALIDMYGKCKHTEDALMIFE-------------MIN-------------------EKDL 241
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W S++ + + L LF KM+ V PD + +VL ACS L+ L +GR +H +
Sbjct: 242 FSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGY 301
Query: 243 ILQNNITQ-----DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
++ N + + D + A++DMY+KCG ++ A + F KDV +W MI G A +G
Sbjct: 302 MIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHG 361
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G EAL +F++M IKP+ TFV VL+AC H+G + +G RM + V PTIEH+
Sbjct: 362 YGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHY 421
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C++D+L RAG L +A + + +P ED I + ALL AC + +LG V + +L
Sbjct: 422 TCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALLGACRLHGNAELGNVVGEKITQLEP 481
Query: 418 Q--SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ +Y+L+S+ Y + G + E E RR MKE +K PG S I+LK
Sbjct: 482 KHCGSGSYILMSSLYGVVGRYEEALEVRRTMKEQNVKKTPGCSWIELK 529
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 146/321 (45%), Gaps = 42/321 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H VTK S + V N+LI YG+ DA ++F+ + +D+ SWN+++S +
Sbjct: 194 GRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQ 253
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN- 120
D L LF +++ ++ D IT+ + AC+ L L +G+ +H Y GL N
Sbjct: 254 CDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENG 313
Query: 121 ----MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ NA++ MYAKC M A +FD M +++ S NI+I GY
Sbjct: 314 DDVLLNNAIMDMYAKCGCMKNADIIFDLM-RNKDVASWNIMIMGY--------------- 357
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
MHG EAL++F +M + + PD V VLSACS + G
Sbjct: 358 -----------AMHG-----YGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQG 401
Query: 237 R-LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD-VVTWTTMIEGLA 294
R + R L+ + T +IDM + G L EA + +D ++ W ++
Sbjct: 402 RSFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALLGACR 461
Query: 295 NYG---LGNEALRVFYQMERK 312
+G LGN Q+E K
Sbjct: 462 LHGNAELGNVVGEKITQLEPK 482
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 34/214 (15%)
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
+L+ MY++C +M+EA+ +F + RN+ + N +I G++ L
Sbjct: 15 SLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLA---------------- 58
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
+ + +K+M GV PD+ V+ AC + R +H +
Sbjct: 59 ---------------ADGFQFYKRMRSVGVMPDKFTFPCVVRACCEFMEV---RKIHGCL 100
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ + + FV +AL++ Y K E+A F + +DVV W MI G G N+A+
Sbjct: 101 FKMGLELNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAV 160
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
VF +M +GI + T S+L+ G I G
Sbjct: 161 VVFKRMGEEGISLSRFTTTSILSILTSMGDINNG 194
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 150/466 (32%), Positives = 250/466 (53%), Gaps = 10/466 (2%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND---F 62
H + L YV ++H A +F ++P ++ N ++ Y
Sbjct: 30 HGLAVRLCLSQSSYVATQIVHICNAHGRAAHAARVFAQIPAPNLHLHNAMIKAYAQNHLH 89
Query: 63 SDSGEVLI-LFKQLIFEGI----VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
D+ EV + + + L V D+ T L AC L G+ VH + + G E
Sbjct: 90 RDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLLKACGALAASRLGRQVHAHVARSGCES 149
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
++N+L+ MY +C ++ A + FD M +++VS N LI+ + M + ARE+F +
Sbjct: 150 HAVVQNSLIEMYTRCGDLSTARKAFDGM-REKDVVSWNTLISAHARMGQMRRARELFYSM 208
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
DK +V W +++ G A+E+F+ M EG PD+ +V+VL AC+ L L+ GR
Sbjct: 209 PDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAVLPACAQLGALELGR 268
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
++ + ++ + ++ AL++MY+KCG +EEAL F+ KDV++W+T I GLA +G
Sbjct: 269 WIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHG 328
Query: 298 LGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
EA+R+F M+R+G + PN TFV +L+AC H+GL+ EG + +M Y V+P +EH
Sbjct: 329 RAREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRYLDQMKEDYGVEPGVEH 388
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL R+G + +A + I+ MP + +LLSAC ++ + + A +++L
Sbjct: 389 YGCVVDLLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSACRSHGDVETAVVAAERLVELE 448
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
V+L+N Y G W EVA R+ ++ TRK PG S+I++
Sbjct: 449 PGDVGNLVMLANVYGAAGRWGEVASTRKEIRSRSTRKTPGCSMIEV 494
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 147/339 (43%), Gaps = 82/339 (24%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G+ +HAHV ++ +S V NSLI Y R + AR FD M +DV SWNTL+S +
Sbjct: 134 LGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVVSWNTLISAHA 193
Query: 60 ---------------------------------NDFSDSGEVLILFKQLIFEGIVADKIT 86
DF+ + EV F+ + EG D ++
Sbjct: 194 RMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEV---FRLMQMEGFEPDDVS 250
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+V + ACA+L L G+ ++ Y +K G+ + + NAL+ MYAKC ++EAL+LF M
Sbjct: 251 IVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMS 310
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
+KD++ W + + G + EA+ LF+
Sbjct: 311 --------------------------------EKDVISWSTAIGGLAAHGRAREAVRLFE 338
Query: 207 KMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA------LI 259
M EG V P+ V +LSACS + G R++ + + +D V+ ++
Sbjct: 339 VMDREGRVMPNGITFVGLLSACSHAGLVDEGL---RYL--DQMKEDYGVEPGVEHYGCVV 393
Query: 260 DMYSKCGSLEEALVTFYKTDC-KDVVTWTTMIEGLANYG 297
D+ + G ++ AL T D W +++ ++G
Sbjct: 394 DLLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSACRSHG 432
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 164/497 (32%), Positives = 249/497 (50%), Gaps = 38/497 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +H+ + L + +G L+ Y + AR +FD++P R+V N ++ Y +
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
GE + +F + + D T + AC+ + G+ +H ATKVGL L +
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV--------- 173
N L+ MY KC + EA + DEM SRR++VS N L+ GY + D A EV
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEM-SRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKI 237
Query: 174 ----------------------------FDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
F ++ K +V W M+ +K P EA+EL+
Sbjct: 238 SHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELY 297
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+M +G PD + SVL AC S L G+ +H +I + + + ++ ALIDMY+KC
Sbjct: 298 SRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKC 357
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G LE+A F +DVV+WT MI G G +A+ +F +++ G+ P+ FV+ L
Sbjct: 358 GCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTL 417
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
AAC H+GL+ EG F+ M Y++ P +EH C+VDLL RAG + +A FI+ M E
Sbjct: 418 AACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPN 477
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
+ ALL AC +S+ D+G A+ + +L + YVLLSN YA G W EV R
Sbjct: 478 ERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNI 537
Query: 446 MKELQTRKKPGNSIIDL 462
MK +K PG S +++
Sbjct: 538 MKSKGLKKNPGASNVEV 554
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 161/372 (43%), Gaps = 78/372 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H TK L S ++VGN L+ YG+ ++AR++ D+M RDV SWN+L+ Y
Sbjct: 158 IGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYA 217
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR--LEKLHYGKTVHCYATKVGLEYM 118
+ L + +++ I D T+ L A + E + Y K + K+G + +
Sbjct: 218 QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFF---KMGKKSL 274
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNIL---------------ING 160
++ N ++ +Y K EA+ L+ M G + VS+ + I+G
Sbjct: 275 VSW-NVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 333
Query: 161 YIDME-----------LVDL---------AREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
YI+ + L+D+ AR+VF+ + +D+V W +M+ + + +
Sbjct: 334 YIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCD 393
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
A+ LF K+ D G+ PD V+ L+ACS L+ GR + + D
Sbjct: 394 AVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKL---------------MTD 438
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
Y LE M++ L G EA R M ++PNE
Sbjct: 439 HYKITPRLEH---------------LACMVDLLGRAGKVKEAYRFIQDM---SMEPNERV 480
Query: 321 FVSVLAACR-HS 331
+ ++L ACR HS
Sbjct: 481 WGALLGACRVHS 492
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 25/253 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H ++ + L ++ + N+LI Y + AR +F+ M RDV SW ++S Y
Sbjct: 327 LGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYG 386
Query: 61 DFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-----VHCYATKVG 114
FS G + + LF +L G+V D I V +AC+ L G++ Y
Sbjct: 387 -FSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPR 445
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAR 171
LE++ M + L + ++ EA R +M N L+ + D ++ LA
Sbjct: 446 LEHLACMVDLL----GRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAA 501
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
+ ++ + + + + KA + EE + M +G L S
Sbjct: 502 DKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKG-----------LKKNPGAS 550
Query: 232 NLQYGRLVHRFIL 244
N++ R++H F++
Sbjct: 551 NVEVNRIIHTFLV 563
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/463 (33%), Positives = 256/463 (55%), Gaps = 10/463 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H HV K +D + +L+ Y R DAR +FD++ +D +NT+++ Y
Sbjct: 123 GEQVHVHVFKNGFQTDERIATTLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAY-- 180
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
++GEV + + +FE ++ ++ T ++ + H + G+ M+ +
Sbjct: 181 -MEAGEVEL--AEELFE-VMPERNTHTLMEMVGGYSARGDMDSAKHVFEMANGVVNMV-L 235
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN-GYIDMELVDLAREVFDEIVDK 180
A++ +AK +D+A +FD M +R++ + N++I Y LV+ AR+VFD + ++
Sbjct: 236 CTAMISGFAKTGSVDDARSVFDGM-RQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPER 294
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++V W SM+ G + + ++A++LF+ M GV D+ + +V+S+C + L GR VH
Sbjct: 295 NVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGRYVH 354
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + + + VK +LIDMYSKCG +++A F +D +WT MI G A GL
Sbjct: 355 AYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSG 414
Query: 301 EALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL +F QME +G + PNE TF+ VL +C H GL+ +G F RM VY + P IEH+ C
Sbjct: 415 EALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGC 474
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL RA LL +AE+FI+ MP +++LL AC E L + VA + +L
Sbjct: 475 MVDLLGRAKLLAEAEQFIEEMPIAPDVAIWRSLLFACRARGEVGLAEYVAERVEELEPSR 534
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
VLLSN YA W +V + R M + K+PG S+I++
Sbjct: 535 CGGNVLLSNVYATTSRWVDVNKVRTGMGRSRVSKRPGCSVIEV 577
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 200 EALELFKKMID--EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
+A+ L+ +M GV P + SVL A + L+ G VH + +N D + T
Sbjct: 85 DAVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIATT 144
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
L+D+Y++CG L++A F + KD + TMI
Sbjct: 145 LVDLYARCGRLDDARRVFDRLLVKDAQLYNTMI 177
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 33/194 (17%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +HA+ L I V NSLI Y + A +F + RD SW ++ +
Sbjct: 349 LGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFA 408
Query: 61 DFSDSGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYM 118
SGE L LF Q+ EG ++ ++IT + + ++C+ + G H + G+
Sbjct: 409 VNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPR 468
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ ++ + + K + EA + +EM +
Sbjct: 469 IEHYGCMVDLLGRAKLLAEAEQFIEEM-------------------------------PI 497
Query: 179 DKDIVLWRSMMHGC 192
D+ +WRS++ C
Sbjct: 498 APDVAIWRSLLFAC 511
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/467 (33%), Positives = 253/467 (54%), Gaps = 35/467 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
+ H+ V K AL SD + +SLI Y R AR +FD++P RD+ SWN++++ Y
Sbjct: 135 ARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAK 194
Query: 62 FSDSGEVLILFKQL-IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E + +F ++ +G D+++LV + AC L L G+ V + + G+
Sbjct: 195 AGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSY 254
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +AL+ MYAKC ++ A R+FD M + R++++ N +I+GY + D
Sbjct: 255 IGSALISMYAKCGDLGSARRIFDGMAA-RDVITWNAVISGYAQNGMAD------------ 301
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
EA+ LF M ++ VT ++ + +VLSAC+++ L G+ +
Sbjct: 302 -------------------EAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQID 342
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ Q D FV TALIDMY+KCGSL A F + K+ +W MI LA++G
Sbjct: 343 EYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISALASHGKAK 402
Query: 301 EALRVFYQM--ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EAL +F M E G +PN+ TFV +L+AC H+GL+ EG +LF M ++ + P IEH+
Sbjct: 403 EALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYS 462
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDLL+RAG LY+A + I+ MP + ++ ALL AC + D+G++V ++++
Sbjct: 463 CMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLGACRSKKNVDIGERVIRMILEVDPS 522
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+ Y++ S YA W + A R M++ K PG S I+++++
Sbjct: 523 NSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENH 569
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 183/374 (48%), Gaps = 43/374 (11%)
Query: 34 FTDARVLFDKM-PFRDVGSWNTLM-SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILF 91
FT A +LF + P + ++N ++ ++ + L LF +++ + + T F
Sbjct: 64 FTYASLLFSHIAPHPNDYAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFPFFF 123
Query: 92 SACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNI 151
+CA L L + H K+ L + ++L+ MY++C + A ++FDE+ RR++
Sbjct: 124 LSCANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEI-PRRDL 182
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
VS N +I GY A EVF E+ +D
Sbjct: 183 VSWNSMIAGYAKAGCAREAVEVFGEMGRRD------------------------------ 212
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
G PDE +VSVL AC L +L+ GR V F+++ +T ++++ +ALI MY+KCG L A
Sbjct: 213 GFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSA 272
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
F +DV+TW +I G A G+ +EA+ +F+ M+ + N+ T +VL+AC
Sbjct: 273 RRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATI 332
Query: 332 GLITEGCQLFRRMGGVYRVQPTIEH--FV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
G + G Q+ Y Q +H FV L+D+ ++ G L A+ K MP +++
Sbjct: 333 GALDLGKQIDE-----YASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNE-A 386
Query: 388 SYKALLSACITYSE 401
S+ A++SA ++ +
Sbjct: 387 SWNAMISALASHGK 400
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 155/355 (43%), Gaps = 70/355 (19%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + V + + + Y+G++LI Y + AR +FD M RDV +WN ++S Y
Sbjct: 236 LGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYA 295
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E + LF + + + +KITL + SACA + L GK + YA++ G ++ +
Sbjct: 296 QNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIF 355
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAKC + A R+F EM ++N S N +I+
Sbjct: 356 VATALIDMYAKCGSLASAQRVFKEM-PQKNEASWNAMISALAS----------------- 397
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDE--GVTPDEEVMVSVLSACSSLSNLQYGRL 238
HG KAK EAL LF+ M DE G P++ V +LSAC
Sbjct: 398 ---------HG--KAK---EALSLFQCMSDEGGGARPNDITFVGLLSAC----------- 432
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH ++ L DM S L + ++ M++ LA G
Sbjct: 433 VHAGLVNEGYR--------LFDMMSTLFGL-----------VPKIEHYSCMVDLLARAGH 473
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
EA + +M KP++ T ++L ACR + G ++ R + V P+
Sbjct: 474 LYEAWDLIEKMPE---KPDKVTLGALLGACRSKKNVDIGERVIRM---ILEVDPS 522
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 134/301 (44%), Gaps = 49/301 (16%)
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
AL LF +M+ ++P+ +C++L+ L R H + + + D +LI
Sbjct: 100 ALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARAAHSLVFKLALHSDPHTTHSLIT 159
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK-GIKPNEA 319
MYS+CG + A F + +D+V+W +MI G A G EA+ VF +M R+ G +P+E
Sbjct: 160 MYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEM 219
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGG-VYRVQPTIEHFV--CLVDLLSRAGLLYQAEEF 376
+ VSVL AC G + +L R + G V T+ ++ L+ + ++ G L A
Sbjct: 220 SLVSVLGACGELGDL----ELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRI 275
Query: 377 IKIMPAEDKF----------------------------------ISYKALLSACITYSEF 402
M A D I+ A+LSAC T
Sbjct: 276 FDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGAL 335
Query: 403 DLGKKVANNMMKLGNQSHEAYV--LLSNFYALEGHWTEVAEARRNMKEL-QTRKKPGNSI 459
DLGK++ + G Q H+ +V L + YA G +A A+R KE+ Q + N++
Sbjct: 336 DLGKQIDEYASQRGFQ-HDIFVATALIDMYAKCG---SLASAQRVFKEMPQKNEASWNAM 391
Query: 460 I 460
I
Sbjct: 392 I 392
>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 558
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 149/453 (32%), Positives = 238/453 (52%), Gaps = 33/453 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H K LD D YV SL+ Y + A+ +FD+MP R+ W LM Y +S
Sbjct: 131 IHGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMKGYLKYSK 190
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLNMEN 123
EV LF + G+ D +TL+ L AC + GK VH + + ++ +E
Sbjct: 191 DSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSFIDQSGYLEA 250
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
+++ MY KC+ L+D AR++F+ V++++V
Sbjct: 251 SIIDMYVKCR--------------------------------LLDNARKLFETSVERNVV 278
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
+W +++ G K ++ EA++LF++M+ E + P+ + ++L +CSSL +L++G+ VH ++
Sbjct: 279 MWTTLISGFAKCERAVEAIDLFRQMLGESILPNHCTLAAILVSCSSLGSLRHGKSVHGYM 338
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++N I DA T+ ID Y++CG+++ A F ++V++W++MI GL EAL
Sbjct: 339 IRNGIEMDAVNFTSFIDTYARCGNIQMARKVFDMMPKRNVISWSSMINAFGINGLFEEAL 398
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
F M+ + + PN TFVS+L+AC HSG + EG + F M Y + P EH+ C+VDL
Sbjct: 399 DCFDNMKSQNLVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGLVPEEEHYACMVDL 458
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L RAG + +A+ FI MP + ++ ALLSAC + E DL ++A ++ + Y
Sbjct: 459 LGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSMEPDESSVY 518
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPG 456
VLLSN YA G W V R M RK G
Sbjct: 519 VLLSNIYADAGMWEMVNCVRHKMGIKGYRKPMG 551
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 186/400 (46%), Gaps = 47/400 (11%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSIYNDF 62
+HA V ++ +G+SL + Y + A FD++P R+ SWNT++S Y+
Sbjct: 26 VHAKVIIHGFQDEVVLGSSLTNAYIQSNRLDFATASFDRIPCWKRNRHSWNTILSGYSKS 85
Query: 63 SDS--GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+VL+L+ ++ D LV AC L L G +H A K GL+
Sbjct: 86 KSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGMLIHGLAMKNGLDKDDY 145
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +L+ MYA+ M+ A ++FDEM R +
Sbjct: 146 VAPSLVEMYAQFGTMESAQKVFDEMPVRNS------------------------------ 175
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
VLW +M G +K + E LF M D G+ D ++ ++ AC ++S + G+ VH
Sbjct: 176 --VLWGVLMKGYLKYSKDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAGKEGKCVH 233
Query: 241 RFILQNN-ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
++ + I Q +++ ++IDMY KC L+ A F + ++VV WTT+I G A
Sbjct: 234 GLSIRRSFIDQSGYLEASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERA 293
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE---- 355
EA+ +F QM + I PN T ++L +C G + G + + G Y ++ IE
Sbjct: 294 VEAIDLFRQMLGESILPNHCTLAAILVSCSSLGSLRHG----KSVHG-YMIRNGIEMDAV 348
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+F +D +R G + A + +MP + IS+ ++++A
Sbjct: 349 NFTSFIDTYARCGNIQMARKVFDMMPKRN-VISWSSMINA 387
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 109/226 (48%), Gaps = 7/226 (3%)
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNILINGYIDMELVDLAREVFD 175
+N ALL + ++ K + ++ ++ G + +V + L N YI +D A FD
Sbjct: 4 VNRNRALLSILSQTKTLHHTQQVHAKVIIHGFQDEVVLGSSLTNAYIQSNRLDFATASFD 63
Query: 176 EIV--DKDIVLWRSMMHGCVKAKQP--EEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
I ++ W +++ G K+K + L L+ +M D +V + AC L
Sbjct: 64 RIPCWKRNRHSWNTILSGYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLG 123
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L+ G L+H ++N + +D +V +L++MY++ G++E A F + ++ V W +++
Sbjct: 124 LLENGMLIHGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMK 183
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
G Y +E R+FY M G+ + T + ++ AC + EG
Sbjct: 184 GYLKYSKDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAGKEG 229
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/466 (32%), Positives = 249/466 (53%), Gaps = 36/466 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G+ +H+ K +SD+YV LI Y + AR + + + RDV SW ++++ Y
Sbjct: 364 LGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYV 423
Query: 60 -NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+DF + E L FK++ G+ D I L SACA ++ + G +H G
Sbjct: 424 QHDFCE--EALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+++ N L+ +YA+C +EA LF EI
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLFR--------------------------------EIE 509
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
KD + W ++ G +++ ++AL +F KM G + +S +SA ++L++++ G+
Sbjct: 510 HKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQ 569
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH ++ T + V ALI +Y KCGS+E+A + F + ++ V+W T+I + +G
Sbjct: 570 VHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGR 629
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G EAL +F QM+++G+KPN+ TF+ VLAAC H GL+ EG F+ M VY + P +H+
Sbjct: 630 GLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYA 689
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VD+L RAG L +A F+ MP + ++ LLSAC + ++G+ A ++++L
Sbjct: 690 CVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPH 749
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+YVLLSN YA+ G W + R+ MK+ RK+PG S I++K+
Sbjct: 750 DSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKN 795
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/433 (27%), Positives = 203/433 (46%), Gaps = 39/433 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA V K A S+ +VGN+LI Y F A +F M F D ++NTL+S +
Sbjct: 163 GRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQ 222
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L +F ++ G+ D +T+ L +ACA + L GK +H Y K G+ +
Sbjct: 223 CGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYIT 282
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
E +LL +Y KC +++ A +F+ +G R N+V N+++ Y ++ DLA+
Sbjct: 283 EGSLLDLYVKCGDIETAHDIFN-LGDRTNVVLWNLMLVAY--GQISDLAK---------- 329
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ E+F +M G+ P++ +L C+ ++ G +H
Sbjct: 330 -------------------SFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHS 370
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++N D +V LIDMYSK G L++A + +DVV+WT+MI G + E
Sbjct: 371 LSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEE 430
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL F +M+ G+ P+ S +AC + +G Q+ R+ V I + LV
Sbjct: 431 ALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARV-YVSGYAADISIWNTLV 489
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS-- 419
+L +R G +A + + +D+ I++ L+S + + L K+ MK+G
Sbjct: 490 NLYARCGRSEEAFSLFREIEHKDE-ITWNGLISG---FGQSRLYKQALMVFMKMGQAGAK 545
Query: 420 HEAYVLLSNFYAL 432
+ + +S AL
Sbjct: 546 YNVFTFISAISAL 558
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 100/186 (53%)
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
N+LI+ Y LV AR+VF E+ +D V W +M+ G ++ +EA L+ +M V
Sbjct: 82 NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVI 141
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
P V+ SVLSAC+ GR++H + + + FV ALI +Y GS + A
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERV 201
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F D VT+ T+I G A G G AL++F +M+ G++P+ T S+LAAC G +
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261
Query: 335 TEGCQL 340
+G QL
Sbjct: 262 QKGKQL 267
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 1/141 (0%)
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL-VHRFILQNNITQDAFVKT 256
PE+ L L + L AC N L +H + + D +
Sbjct: 23 PEKILSLVAAKASHHRALGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGN 82
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
LID+Y+K G + +A F + +D V+W M+ G A GLG EA R++ QM + P
Sbjct: 83 LLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIP 142
Query: 317 NEATFVSVLAACRHSGLITEG 337
SVL+AC L +G
Sbjct: 143 TPYVLSSVLSACTKGKLFAQG 163
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 165/497 (33%), Positives = 247/497 (49%), Gaps = 38/497 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +H+ + L + +G L+ Y + AR +FD++P R+V N ++ Y +
Sbjct: 60 RTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNN 119
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
E + +F + + D T + AC+ + GK +H ATKVGL L +
Sbjct: 120 GFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVG 179
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV--------- 173
N L+ MY KC + EA + DEM SRR++VS N L+ GY + D A EV
Sbjct: 180 NGLVSMYGKCGFLSEARLVLDEM-SRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKI 238
Query: 174 ----------------------------FDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
F ++ K +V W M+ +K P EA+EL+
Sbjct: 239 SHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELY 298
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
M +G PD + SVL AC S L G+ +H +I + + + ++ ALIDMY+KC
Sbjct: 299 SGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKC 358
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G L+ A F +DVV+WT MI G G +A+ +F +M+ G+ P+ FV+ L
Sbjct: 359 GCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTL 418
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
AAC H+GL+ EG F+ M Y++ P +EH C+VDLL RAG + +A +FI+ MP E
Sbjct: 419 AACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPN 478
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
+ ALL AC +S D+G A+ + +L + YVLLSN YA G W EV R
Sbjct: 479 ERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNI 538
Query: 446 MKELQTRKKPGNSIIDL 462
MK +K PG S +++
Sbjct: 539 MKSKGLKKNPGASNVEV 555
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 94/372 (25%), Positives = 159/372 (42%), Gaps = 78/372 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H TK L S ++VGN L+ YG+ ++AR++ D+M RDV SWN+L++ Y
Sbjct: 159 IGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYA 218
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR--LEKLHYGKTVHCYATKVGLEYM 118
+ L + +++ I D T+ L A + E + Y K + K+G + +
Sbjct: 219 QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFF---KMGKKSL 275
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGS------------------------------- 147
++ N ++ +Y K EA+ L+ M +
Sbjct: 276 VSW-NVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 334
Query: 148 ---RRNIVSLNILINGYIDM----ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
R+ ++ +L N IDM +D AR+VF+ + +D+V W +M+ + + +
Sbjct: 335 YIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCD 394
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
A+ LF KM D G+ PD V+ L+ACS L+ GR + + D
Sbjct: 395 AVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKL---------------MTD 439
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
Y LE M++ L G EA + +M ++PNE
Sbjct: 440 HYKITPRLEH---------------LACMVDLLGRAGKVKEAYKFIQEMP---MEPNERV 481
Query: 321 FVSVLAACR-HS 331
+ ++L ACR HS
Sbjct: 482 WGALLGACRVHS 493
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 12/234 (5%)
Query: 209 IDEGVTPDEEVMV--SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
+D+ +P E + VL L L R VH I+ ++ ++ + L+ Y+
Sbjct: 33 LDQKNSPKETAFMLGQVLDTYPDLKTL---RTVHSRIISEDLRYNSSLGVKLMRAYASLK 89
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+ A F + ++V+ MI N G E ++VF M +KP+ TF VL
Sbjct: 90 DVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLK 149
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAED 384
AC SG I G ++ G +V + FV LV + + G L +A + M D
Sbjct: 150 ACSCSGNIVIGKKIH---GSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRD 206
Query: 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438
+S+ +L++ FD +V M + SH+A + S A+ TE
Sbjct: 207 -VVSWNSLVAGYAQNQRFDDALEVCREMESV-KISHDAGTMASLLPAVSNTTTE 258
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/383 (38%), Positives = 223/383 (58%), Gaps = 1/383 (0%)
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL 139
+V D++ + + S CA L +GK +H Y + AL+ MYA C +M+ A
Sbjct: 6 VVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAE 65
Query: 140 RLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
+L++ + S + IV ++ GY V++A +F+ + KD+V W +M+ G ++ +P
Sbjct: 66 KLYNRV-SEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPM 124
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
EAL LF M GV PDE M+SV+SAC+++ L+ R +H F+ +++ + + ALI
Sbjct: 125 EALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALI 184
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
DM+SKCGSL AL F K+VVTWT++I A +G G AL +F M+ +GI+PN
Sbjct: 185 DMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGV 244
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
TF+ +L AC H+GL+ EG LF+ M YR++P EH+ C+VDLL RA LL QA + I+
Sbjct: 245 TFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQS 304
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
M + + +LL+AC + + +LG A +++L A VLLSN YA G+W +V
Sbjct: 305 MHLRPNVVIWGSLLAACRMHGDLELGTFAAKKILELDPNHGGAQVLLSNIYAEYGNWNDV 364
Query: 440 AEARRNMKELQTRKKPGNSIIDL 462
E R M+ T KK G S ++L
Sbjct: 365 KEVRGVMEVQGTWKKKGCSWMEL 387
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 107/232 (46%), Gaps = 32/232 (13%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ +I + ++++ Y + A +F+ MP +DV SW+ +++ Y + S E L LF
Sbjct: 73 EKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHD 132
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+ G+ D+IT++ + SACA + L + +H + + +L + NAL+ M++KC
Sbjct: 133 MQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGS 192
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+ AL +VF+ + K++V W S++
Sbjct: 193 LTLAL--------------------------------DVFNAMPQKNVVTWTSIITASAM 220
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
AL LF+ M EG+ P+ + +L AC ++ GRL+ + ++Q
Sbjct: 221 HGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQ 272
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H+ V ++ + +GN+LI + + T A +F+ MP ++V +W ++++ D
Sbjct: 164 IHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGD 223
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLNMEN 123
L LF+ + EGI + +T + L AC + G+ + + +E M
Sbjct: 224 GRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYG 283
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
++ + + K + +A L M R N+V
Sbjct: 284 CMVDLLGRAKLLGQAADLIQSMHLRPNVV 312
>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/461 (32%), Positives = 243/461 (52%), Gaps = 32/461 (6%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ LH + + + + N+ I Y + A +F M + V SWN ++ +
Sbjct: 436 RALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQN 495
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
D + L + ++ GI+ D ++V L AC RL L YGK +H + + GLE +
Sbjct: 496 GDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVA 555
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
+LL +Y C + F+ MG DK+
Sbjct: 556 VSLLSLYFHCSKPFYGRTYFETMG--------------------------------DKNS 583
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +M+ G + + P EAL LF++M+ +G+ PDE + S+L ACS LS L G+ VH F
Sbjct: 584 VCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCF 643
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
L+N++ +D FV +L+DMY+K G L + F + + K+V +W MI G +G GN+A
Sbjct: 644 ALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKA 703
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
+ +F M+R +P+ TF+ VL AC H+GL++EG +M +Y+++P +EH+ C++D
Sbjct: 704 VELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVID 763
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
+L RAG L +A FI MP E + +LLS+ ITY + ++G+K A ++ L ++
Sbjct: 764 MLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADS 823
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+LLSN YA G W V R+ MK+L +K G S I+L+
Sbjct: 824 YILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELR 864
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 114/372 (30%), Positives = 181/372 (48%), Gaps = 46/372 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H K L D++VGN++I YG+ +A LFDKMP +++ SWN+L+
Sbjct: 228 LGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLI---R 284
Query: 61 DFSDSG---EVLILFKQLI--FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
FS++G E F+ L+ +G++ D T+V L C+ + G +H A K+GL
Sbjct: 285 GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGL 344
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ L + NAL+ MY+KC + EA LF
Sbjct: 345 VHELMVCNALIDMYSKCGCLSEAAILF--------------------------------R 372
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI--DEGVTPDEEVMVSVLSACSSLSNL 233
+I +K +V W SM+ + E +L +KM +E + +E ++++L AC S L
Sbjct: 373 KIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESEL 432
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
R +H + L+++ + A I Y+KCGSL A F+ + K V +W +I G
Sbjct: 433 LSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGH 492
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A G +AL +++M R GI P++ + VS+L AC GL+ G ++ G V R
Sbjct: 493 AQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIH---GFVLRNGLE 549
Query: 354 IEHFVCLVDLLS 365
+ FV V LLS
Sbjct: 550 MNSFVA-VSLLS 560
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 153/332 (46%), Gaps = 34/332 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H K L ++ V N+LI Y + ++A +LF K+ + V SWN+++ Y+
Sbjct: 331 VGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYS 390
Query: 61 DFSDSGEVLILFKQLIFEG--IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
E L +++ E + +++T++ L AC +L + +H Y+ + +Y
Sbjct: 391 REGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYK 450
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ NA + YAKC + A VF +
Sbjct: 451 ELINNAFIAAYAKCGSLV--------------------------------FAEHVFFGMN 478
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K + W +++ G + P +AL+ + +M G+ PD+ +VS+L AC L LQYG+
Sbjct: 479 TKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKE 538
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H F+L+N + ++FV +L+ +Y C F K+ V W M+ G + L
Sbjct: 539 IHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNEL 598
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
NEAL +F QM G++P+E S+L AC
Sbjct: 599 PNEALSLFRQMLSDGLEPDEIAIASILGACSQ 630
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 156/324 (48%), Gaps = 41/324 (12%)
Query: 12 TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY--NDFSDSGEVL 69
+ D + LI Y ++R++FD++ +++ WN L+S Y N+ D E +
Sbjct: 137 SQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYD--EAI 194
Query: 70 ILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
F +LI D T L AC +H GK+VH A K+GL L + NA++ +
Sbjct: 195 HTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIAL 254
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
Y KC +DEA+ LFD+M +N++S N LI G+ + W
Sbjct: 255 YGKCGFLDEAVELFDKM-PEQNLISWNSLIRGF------------------SENGFWL-- 293
Query: 189 MHGCVKAKQPEEALELFKKMID--EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
EA F+ +++ +G+ PD MV++L CS N+ G ++H ++
Sbjct: 294 -----------EAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKL 342
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ + V ALIDMYSKCG L EA + F K + K VV+W +MI + G E +
Sbjct: 343 GLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLL 402
Query: 307 YQ--MERKGIKPNEATFVSVLAAC 328
+ ME + ++ NE T +++L AC
Sbjct: 403 RKMWMEEELMEVNEVTILNLLPAC 426
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 127/249 (51%), Gaps = 15/249 (6%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACS 228
+R VFD +++K++ W +++ G V+ + +EA+ F ++I PD ++ AC+
Sbjct: 162 SRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACT 221
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
++ G+ VH ++ + D FV A+I +Y KCG L+EA+ F K +++++W +
Sbjct: 222 GKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNS 281
Query: 289 MIEGLANYGLGNEALRVFYQM--ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
+I G + G EA R F + G+ P+ AT V++L C G + G + G
Sbjct: 282 LIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIH---GM 338
Query: 347 VYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDK-FISYKALLSA----CITY 399
++ E VC L+D+ S+ G L +A I E+K +S+ +++ A +
Sbjct: 339 AVKLGLVHELMVCNALIDMYSKCGCLSEAA--ILFRKIENKSVVSWNSMIGAYSREGFVF 396
Query: 400 SEFDLGKKV 408
FDL +K+
Sbjct: 397 ETFDLLRKM 405
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 122/276 (44%), Gaps = 41/276 (14%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H V + L+ + +V SL+ Y + R F+ M ++ WN ++S Y+
Sbjct: 536 GKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQ 595
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF+Q++ +G+ D+I + + AC++L L GK VHC+A K L +
Sbjct: 596 NELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFV 655
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MYAK + + R+F+ + + + S N++I G+
Sbjct: 656 ACSLMDMYAKSGFLGHSQRIFNRLNGKE-VASWNVMITGF-------------------- 694
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG----- 236
+HG Q +A+ELF+ M PD + VL AC + G
Sbjct: 695 ------GVHG-----QGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLA 743
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
++ + L+ + A V IDM + G L EAL
Sbjct: 744 QMQTLYKLEPELEHYACV----IDMLGRAGRLNEAL 775
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 8/181 (4%)
Query: 217 EEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
+E M +L C N++ GR L + + + D + T LI MYS CG E+ + F
Sbjct: 107 KEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVF 166
Query: 276 YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLI 334
+ K++ W ++ G L +EA+ F ++ +P+ TF ++ AC I
Sbjct: 167 DRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDI 226
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392
G + G ++ ++ FV ++ L + G L +A E MP E IS+ +L
Sbjct: 227 HLGKSVH---GMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMP-EQNLISWNSL 282
Query: 393 L 393
+
Sbjct: 283 I 283
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H K +L D +V SL+ Y + ++ +F+++ ++V SWN +++ +
Sbjct: 636 LGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFG 695
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLE 116
+ + LF+ + D+ T + + AC E L+Y + T LE
Sbjct: 696 VHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQ---TLYKLE 752
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEM 145
L ++ M + ++EAL +EM
Sbjct: 753 PELEHYACVIDMLGRAGRLNEALNFINEM 781
>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
Length = 852
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/463 (33%), Positives = 247/463 (53%), Gaps = 32/463 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH ++ + + D+++ ++L+ Y + A+ ++D DV +T++S Y
Sbjct: 367 GKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E + +F+ L+ +GI + + + + ACA + + G+ +H YA K E +
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYV 486
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
E+AL+ MYAKC +D L+ +F +I KD
Sbjct: 487 ESALMDMYAKCGRLD--------------------------------LSHYIFSKISAKD 514
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W SM+ + +PEEAL LF++M EGV + SVLSAC+SL + YG+ +H
Sbjct: 515 EVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHG 574
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+++ I D F ++ALIDMY KCG+LE A F K+ V+W ++I YGL E
Sbjct: 575 VVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKE 634
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
++ + M+ +G K + TF+++++AC H+G + EG +LFR M Y++ P +EHF C+V
Sbjct: 635 SVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMV 694
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL SRAG L +A E I MP + + ALL AC + +L + + + KL +
Sbjct: 695 DLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSG 754
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVL+SN A+ G W V++ RR MK+ + +K PG S +D+ +
Sbjct: 755 YYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNN 797
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 139/517 (26%), Positives = 232/517 (44%), Gaps = 81/517 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H LD D++VG++LI Y L DAR +FD M RD WN +M Y
Sbjct: 164 LGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYV 223
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ LF + G + TL S A L +G +H A K GLE +
Sbjct: 224 KAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVA 283
Query: 121 MENALLLMYAKCKEM-------------------------------DEALRLFDEM---G 146
+ N L+ MYAKCK + D+AL LF +M G
Sbjct: 284 VANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSG 343
Query: 147 SR------------------------------RNIVSLNI-----LINGYIDMELVDLAR 171
R RN V +++ L++ Y V +A+
Sbjct: 344 IRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQ 403
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
V+D D+V+ +M+ G V +EA+++F+ ++++G+ P+ + SVL AC+S++
Sbjct: 404 SVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMA 463
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
++ G+ +H + L+N +V++AL+DMY+KCG L+ + F K KD VTW +MI
Sbjct: 464 AMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMIS 523
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
A G EAL +F +M +G+K + T SVL+AC I G + + GV
Sbjct: 524 SFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYG----KEIHGVVIKG 579
Query: 352 PTIEHFV---CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
P L+D+ + G L A + MP +++ +S+ ++++ +Y + L K+
Sbjct: 580 PIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNE-VSWNSIIA---SYGAYGLVKES 635
Query: 409 ANNMMKLGNQSHEA-YVLLSNFYALEGHWTEVAEARR 444
+ + + + +A +V + H +V E R
Sbjct: 636 VSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLR 672
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 144/329 (43%), Gaps = 45/329 (13%)
Query: 4 GLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVG---SWNTLMSIYN 60
GLHA T TAL + L+ Y F DA +F +P WN L+
Sbjct: 69 GLHA--TDTALQT------RLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLT 120
Query: 61 DFSDSGEVLILFKQLIF--EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
D L+ + ++ + D T + +CA L + G+ VH A +GL+
Sbjct: 121 MAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGD 180
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + +AL+ MYA + +A ++FD M + R+ V N++++GY
Sbjct: 181 MFVGSALIKMYANGGLLWDARQVFDGM-AERDCVLWNVMMDGY----------------- 222
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
VKA A+ELF M G P+ + LS ++ S+L +G
Sbjct: 223 --------------VKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQ 268
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++ + + V L+ MY+KC L++ F D+VTW MI G G
Sbjct: 269 LHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGF 328
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAA 327
++AL +F M++ GI+P+ T VS+L A
Sbjct: 329 VDQALLLFCDMQKSGIRPDSVTLVSLLPA 357
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 114/215 (53%), Gaps = 5/215 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH++ K A + YV ++L+ Y + + +F K+ +D +WN+++S +
Sbjct: 467 LGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFA 526
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L LF+++ EG+ +T+ + SACA L ++YGK +H K + L
Sbjct: 527 QNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLF 586
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY----IDMELVDLAREVFDE 176
E+AL+ MY KC ++ A R+F+ M +N VS N +I Y + E V L R + +E
Sbjct: 587 AESALIDMYGKCGNLEWAHRVFESM-PEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEE 645
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
D V + +++ C A Q +E L LF+ M +E
Sbjct: 646 GFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEE 680
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 126/333 (37%), Gaps = 34/333 (10%)
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYM-LNMENALLLMYAKCKEMDEALRLFDEM 145
L+ + C L G VH A GL ++ L+ MY + +A+ +F +
Sbjct: 42 LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
+L W ++ G A AL +
Sbjct: 102 PRGAAACALP-----------------------------WNWLIRGLTMAGDYRSALLFY 132
Query: 206 KKMI--DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
KM PD V+ +C++L + GRLVHR + D FV +ALI MY+
Sbjct: 133 LKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYA 192
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
G L +A F +D V W M++G G + A+ +F M G +PN AT
Sbjct: 193 NGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLAC 252
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
L+ + G QL + Y ++ + LV + ++ L + +MP +
Sbjct: 253 FLSVSATESDLFFGVQL-HTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRD 311
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
D +++ ++S C+ D + +M K G
Sbjct: 312 D-LVTWNGMISGCVQNGFVDQALLLFCDMQKSG 343
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/460 (31%), Positives = 240/460 (52%), Gaps = 32/460 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA V K ++D+ V N+L+ Y + D L++ M RD+ SWN +S +D
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHD 493
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L +F ++ EG + + T + + +C+ L +HYG+ VH + K L+ +
Sbjct: 494 CGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFV 553
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYAKC +++A D+A F+ + +D
Sbjct: 554 CTALIDMYAKCMYLEDA-----------------------------DVA---FNRLSVRD 581
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W ++ + Q E+AL F++M EGV P+E + LS CSSL++L+ G+ +H
Sbjct: 582 LFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHS 641
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ ++ D FV +AL+DMY+KCG +EEA F +D + W T+I G A G GN+
Sbjct: 642 MVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNK 701
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL F M +GI P+ TF +L+AC H GL+ EG + F M + + PT++H C+V
Sbjct: 702 ALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMV 761
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L R G + E+FI+ M + ++ +L A ++ LG+K AN + +L +
Sbjct: 762 DILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEES 821
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+Y+LLSN +A EG W +V R M +K+PG S ++
Sbjct: 822 SYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVE 861
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 186/395 (47%), Gaps = 34/395 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H + K ++ D ++ SL++ Y + AR++ KMP RDV SW L+
Sbjct: 130 VAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLV 189
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + + LF+++ EGI+ ++ TL AC+ L GK +H A K+GL L
Sbjct: 190 AEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLF 249
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +AL+ +YAKC E ++LA ++F + ++
Sbjct: 250 VGSALVDLYAKCGE--------------------------------IELASKMFIGMPEQ 277
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ V W +++G + L+LF M++ V +E + +VL C++ NL+ G+++H
Sbjct: 278 NDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIH 337
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I++ + F+ L+DMYSKCG +A+ F D+V W+ +I L G
Sbjct: 338 SLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSE 397
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
E++++F+ M PN+ T S+L+A ++G + G Q Y + + L
Sbjct: 398 ESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG-QSIHACVWKYGFETDVAVSNAL 456
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
V + + G ++ + + M D IS+ A LS
Sbjct: 457 VTMYMKNGCVHDGTKLYESMVDRD-LISWNAYLSG 490
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/412 (25%), Positives = 188/412 (45%), Gaps = 41/412 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA K L D++VG++L+ Y + A +F MP ++ +WN L++ Y
Sbjct: 231 LGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYA 290
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D VL LF ++ + ++ TL + CA + L G+ +H K G E
Sbjct: 291 QRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEF 350
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ L+ MY+KC +A+ VF I
Sbjct: 351 IGCGLVDMYSKCGLAIDAIG--------------------------------VFKTIKKP 378
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIV+W +++ + Q EE+++LF M P++ + S+LSA ++ NLQYG+ +H
Sbjct: 379 DIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIH 438
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + D V AL+ MY K G + + + +D+++W + GL + G+ +
Sbjct: 439 ACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYD 498
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC- 359
L +FY M +G PN TF+S+L +C + G Q+ + + Q +FVC
Sbjct: 499 RPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAH---IIKNQLDDNNFVCT 555
Query: 360 -LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
L+D+ ++ L A+ + D F ++ +++ Y++ + G+K N
Sbjct: 556 ALIDMYAKCMYLEDADVAFNRLSVRDLF-TWTVIIT---NYAQTNQGEKALN 603
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 135/273 (49%), Gaps = 7/273 (2%)
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
L+N Y AR V ++ D+D+V W +++ G V +++ LF++M +EG+ P+
Sbjct: 153 LVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPN 212
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
E + + L ACS L G+ +H + + D FV +AL+D+Y+KCG +E A F
Sbjct: 213 EFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFI 272
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
++ VTW ++ G A G L++F M +K NE T +VL C +S + +
Sbjct: 273 GMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQ 332
Query: 337 GCQLFRRMGGVYRVQPTIEHFV-C-LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
G Q+ + + + F+ C LVD+ S+ GL A K + D + + AL++
Sbjct: 333 G-QVIHSL--IIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPD-IVVWSALIT 388
Query: 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427
+ + K+ ++M+LG+ Y + S
Sbjct: 389 CLDQQGQSEESIKLF-HLMRLGDTLPNQYTICS 420
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK 281
S+L C+S +L + +H I+++ I D+ + +L+++Y+KC A + K +
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDR 176
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
DVV+WT +I+GL G N+++ +F +M+ +GI PNE T + L AC + G Q+
Sbjct: 177 DVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMH 236
Query: 342 RRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ +++ ++ FV LVDL ++ G + A + MP ++ +++ LL+
Sbjct: 237 AQ---AFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQND-VTWNVLLNG 288
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 165/519 (31%), Positives = 266/519 (51%), Gaps = 62/519 (11%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+ A + L+ + +V + I R AR LFDK+P + +WN + Y
Sbjct: 31 IQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGH 90
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ ++LF +L + + T ++ +C +LE + G+ VHC ATK G + + +
Sbjct: 91 HRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATS 150
Query: 125 LLLMYAKCKEMDEALRLFDEMGSR------------------------------RNIVSL 154
L+ MY+K +++A ++F EM R R++V
Sbjct: 151 LIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMW 210
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC-----------VKAKQPE---- 199
++LI+GYI+ + + ARE+FD++ ++D + W +M++G V + PE
Sbjct: 211 SVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVF 270
Query: 200 ----------------EALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
E LE FK+M+ EG V P++ +V+VLSACS L L G+ VH +
Sbjct: 271 SWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVY 330
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+ FV LIDMY+KCG +E A+V F D KD+++W T+I GLA +G +A
Sbjct: 331 AESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDA 390
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F +M+ +G +P+ TFV +L+AC H GL+ +G F+ M Y + P IEH+ C+VD
Sbjct: 391 LGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVD 450
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL RAGLL QA FI+ MP E + + ALL AC Y ++ + +++L +
Sbjct: 451 LLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIELEPNNPAN 510
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+V++SN Y G +VA + M++ RK PG S+I+
Sbjct: 511 FVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIE 549
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MGK +H + +++VGN LI Y + + +A V+F+ + +D+ SWNT+++
Sbjct: 323 MGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLA 382
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + L +F ++ EG D +T V + SAC H K G Y +
Sbjct: 383 IHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACT-----------HMGLVKDGFLYFKS 431
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
M + Y+ +++ + D +G G +D L + R++ ++
Sbjct: 432 MVDH----YSIVPQIEHYGCMVDLLGRA-----------GLLDQAL-NFIRKM---PIEP 472
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVS 222
D V+W +++ C K E A +++I+ E P VMVS
Sbjct: 473 DAVIWAALLGACRLYKNVEIAELALQRLIELEPNNPANFVMVS 515
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
EE +++L +C + L + I+ + + + FV I S+ + A F
Sbjct: 12 EEKFITLLRSCKNYERLHQ---IQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFD 68
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
K + TW M G G + + +F ++ R PN TF ++ +C + E
Sbjct: 69 KIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVRE 128
Query: 337 G 337
G
Sbjct: 129 G 129
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/463 (32%), Positives = 257/463 (55%), Gaps = 24/463 (5%)
Query: 2 GKGLHAHVTKT-ALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
GK LHA+ K +LD + +VG++L+ Y R +FD M R +G WN +++ Y+
Sbjct: 234 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 293
Query: 61 DFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L+LF + G++A+ T+ + AC R + +H + K GL+
Sbjct: 294 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 353
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++N L+ MY++ ++D A+R+F +M R++V+ N +I GY VF E +
Sbjct: 354 FVQNTLMDMYSRLGKIDIAMRIFGKM-EDRDLVTWNTMITGY-----------VFSEHHE 401
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
++L M + K + + L P+ ++++L +C++LS L G+ +
Sbjct: 402 DALLLLHKMQNLERKVSKGASRVSL---------KPNSITLMTILPSCAALSALAKGKEI 452
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + ++NN+ D V +AL+DMY+KCG L+ + F + K+V+TW +I +G G
Sbjct: 453 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 512
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA+ + M +G+KPNE TF+SV AAC HSG++ EG ++F M Y V+P+ +H+ C
Sbjct: 513 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 572
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAE-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
+VDLL RAG + +A + + +MP + +K ++ +LL A ++ ++G+ A N+++L
Sbjct: 573 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN 632
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YVLL+N Y+ G W + E RRNMKE RK+PG S I+
Sbjct: 633 VASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 675
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 173/379 (45%), Gaps = 50/379 (13%)
Query: 1 MGKGLHAHVTKTALDSD-IYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+GK +HAHV K D + V N+L++ Y + F +FD++ R+ SWN+L+S
Sbjct: 28 LGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSL 87
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL---EKLHYGKTVHCYATKVGLE 116
F L F+ ++ E + TLV + +AC+ L E L GK VH Y + G E
Sbjct: 88 CSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-E 146
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ N L+ MY K ++ + L G R
Sbjct: 147 LNSFIINTLVAMYGKLGKLASSKVLLGSFGGR---------------------------- 178
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
D+V W +++ + +Q EALE ++M+ EGV PDE + SVL ACS L L+ G
Sbjct: 179 ----DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 234
Query: 237 RLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
+ +H + L+N ++ +++FV +AL+DMY C + F + + W MI G +
Sbjct: 235 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQ 294
Query: 296 YGLGNEALRVFYQMERK-GIKPNEATFVSVLAACRHSGLIT--EGCQLFRRMGGVYR--- 349
EAL +F ME G+ N T V+ AC SG + E F G+ R
Sbjct: 295 NEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRF 354
Query: 350 VQPTIEHFVCLVDLLSRAG 368
VQ T L+D+ SR G
Sbjct: 355 VQNT------LMDMYSRLG 367
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 121/270 (44%), Gaps = 37/270 (13%)
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY-MLNMENALLLMYAKCK 133
+I GI D L A A L+ + GK +H + K G + + N L+ +Y KC
Sbjct: 1 MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
+ + VFD I +++ V W S++
Sbjct: 61 DFGAVYK--------------------------------VFDRISERNQVSWNSLISSLC 88
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS---NLQYGRLVHRFILQNNITQ 250
++ E ALE F+ M+DE V P +VSV++ACS+L L G+ VH + L+
Sbjct: 89 SFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-EL 147
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
++F+ L+ MY K G L + V +D+VTW T++ L EAL +M
Sbjct: 148 NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMV 207
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQL 340
+G++P+E T SVL AC H ++ G +L
Sbjct: 208 LEGVEPDEFTISSVLPACSHLEMLRTGKEL 237
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/459 (32%), Positives = 245/459 (53%), Gaps = 2/459 (0%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM-PFRDVGSWNTLMSIYNDFSD 64
H K ++VGN+L+H D+R LF +M P R+V SWNT++ +
Sbjct: 130 HGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGE 189
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ E LF+++ +G++AD T V L C++ L G+ VHC+ G L + NA
Sbjct: 190 TSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNA 249
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MY KC ++ A R FD M +N+VS ++ VD AR+ F+++ +++I+
Sbjct: 250 LVDMYGKCGDLWMAHRCFDVM-PIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIIS 308
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ V+ + E L L+ +M G+TPDE + VLS +L GR++H +I
Sbjct: 309 WNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQ 368
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ V +LIDMY++CG ++ ++ F + K+ ++W +I LA +G EA+
Sbjct: 369 DSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVM 428
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
F M P+E TFV +L+AC H GL+ +G F+ M +Y V+P +EH+ C+VDLL
Sbjct: 429 FFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYACMVDLL 488
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
R G L +A + IK MP + + + AL+ AC + ++GK +++L + +V
Sbjct: 489 GRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLELEGINGGLFV 548
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
L+SN W ++ R+ M++ T+K G S I++
Sbjct: 549 LISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEIN 587
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 116/429 (27%), Positives = 184/429 (42%), Gaps = 72/429 (16%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFY-------GRMALFTDARVLFDKMPFRDVGSWNTLMS 57
LHAH+ + V L+ Y G +AL AR +FD++P D ++N+L+
Sbjct: 22 LHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVAL-CHARRMFDRVPDPDRFAYNSLIR 80
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y++ E L L + ++ GI+ ++ TL + AC+R + H A K+G
Sbjct: 81 AYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHALATHGVAIKLGYVR 140
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + NALL A + ++ RLF EM RN+VS
Sbjct: 141 QVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVS------------------------ 176
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
W +M+ GC +A + EA LF++M +GV D VS+L CS NL+ GR
Sbjct: 177 -------WNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGR 229
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
LVH +L + D + AL+DMY KCG L A F K+VV+WT+M+ LA +G
Sbjct: 230 LVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHG 289
Query: 298 LGNEALRVFYQMERK-------------------------------GIKPNEATFVSVLA 326
+ A F QM + G+ P+E T VL+
Sbjct: 290 SVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLS 349
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
+G + G + + + P + L+D+ +R G + + MP ++
Sbjct: 350 VHGQNGDLASGRMIHCYIQDSFS-DPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNT- 407
Query: 387 ISYKALLSA 395
IS+ ++ A
Sbjct: 408 ISWNVIIGA 416
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 151/346 (43%), Gaps = 68/346 (19%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGR------------------MALFTD------ 36
+G+ +H H+ + D+ +GN+L+ YG+ + +T
Sbjct: 227 VGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALA 286
Query: 37 -------ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
AR F++MP R++ SWN ++S Y E L L+ ++ G+ D++TL
Sbjct: 287 KHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAG 346
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ S + L G+ +HCY + + + N+L+ MYA+C ++D ++ LF EM +
Sbjct: 347 VLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEM-PNK 405
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N +S N++I MHG + +EA+ F+ M+
Sbjct: 406 NTISWNVIIGAL--------------------------AMHG-----RAQEAVMFFRAMV 434
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NNITQDAFVKTALIDMYSKCGSL 268
+ +PDE V +LSACS L+ G+ + + N+ + ++D+ + G L
Sbjct: 435 SDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYACMVDLLGRHGHL 494
Query: 269 EEALVTFYKTDCK-DVVTWTTMIEGLANYG---LGNEALRVFYQME 310
+A+ K DVV W +I +G +G A++ ++E
Sbjct: 495 AKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLELE 540
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 18/226 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H ++ + D + V NSLI Y R + LF +MP ++ SWN ++
Sbjct: 360 GRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAM 419
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK-----TVHCYATKVGLE 116
+ E ++ F+ ++ + D+IT V L SAC+ L G+ H Y K +E
Sbjct: 420 HGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVE 479
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ M + L + + +A+ L +M + ++V LI V++ + +
Sbjct: 480 HYACMVDLL----GRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQ 535
Query: 177 IVDKD------IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
+++ + VL ++++ + +Q E+ L K M D G D
Sbjct: 536 LLELEGINGGLFVLISNLLY---ETRQWEDMKRLRKLMRDRGTKKD 578
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/460 (31%), Positives = 240/460 (52%), Gaps = 32/460 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA V K ++D+ V N+L+ Y + D L++ M RD+ SWN +S +D
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHD 493
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L +F ++ EG + + T + + +C+ L +HYG+ VH + K L+ +
Sbjct: 494 CGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFV 553
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYAKC +++A D+A F+ + +D
Sbjct: 554 CTALIDMYAKCMYLEDA-----------------------------DVA---FNRLSVRD 581
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W ++ + Q E+AL F++M EGV P+E + LS CSSL++L+ G+ +H
Sbjct: 582 LFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHS 641
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ ++ D FV +AL+DMY+KCG +EEA F +D + W T+I G A G GN+
Sbjct: 642 MVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNK 701
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL F M +GI P+ TF +L+AC H GL+ EG + F M + + PT++H C+V
Sbjct: 702 ALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMV 761
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L R G + E+FI+ M + ++ +L A ++ LG+K AN + +L +
Sbjct: 762 DILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEES 821
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+Y+LLSN +A EG W +V R M +K+PG S ++
Sbjct: 822 SYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVE 861
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 186/395 (47%), Gaps = 34/395 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H + K ++ D ++ SL++ Y + AR++ KMP RDV SW L+
Sbjct: 130 VAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLV 189
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + + LF+++ EGI+ ++ TL AC+ L GK +H A K+GL L
Sbjct: 190 AEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLF 249
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +AL+ +YAKC E ++LA ++F + ++
Sbjct: 250 VGSALVDLYAKCGE--------------------------------IELASKMFIGMPEQ 277
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ V W +++G + L+LF M++ V +E + +VL C++ NL+ G+++H
Sbjct: 278 NDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIH 337
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I++ + F+ L+DMYSKCG +A+ F D+V W+ +I L G
Sbjct: 338 SLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSE 397
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
E++++F+ M PN+ T S+L+A ++G + G Q Y + + L
Sbjct: 398 ESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG-QSIHACVWKYGFETDVAVSNAL 456
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
V + + G ++ + + M D IS+ A LS
Sbjct: 457 VTMYMKNGCVHDGTKLYESMVDRD-LISWNAYLSG 490
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/412 (25%), Positives = 188/412 (45%), Gaps = 41/412 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA K L D++VG++L+ Y + A +F MP ++ +WN L++ Y
Sbjct: 231 LGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYA 290
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D VL LF ++ + ++ TL + CA + L G+ +H K G E
Sbjct: 291 QRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEF 350
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ L+ MY+KC +A+ VF I
Sbjct: 351 IGCGLVDMYSKCGLAIDAIG--------------------------------VFKTIKKP 378
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIV+W +++ + Q EE+++LF M P++ + S+LSA ++ NLQYG+ +H
Sbjct: 379 DIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIH 438
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + D V AL+ MY K G + + + +D+++W + GL + G+ +
Sbjct: 439 ACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYD 498
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC- 359
L +FY M +G PN TF+S+L +C + G Q+ + + Q +FVC
Sbjct: 499 RPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAH---IIKNQLDDNNFVCT 555
Query: 360 -LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
L+D+ ++ L A+ + D F ++ +++ Y++ + G+K N
Sbjct: 556 ALIDMYAKCMYLEDADVAFNRLSVRDLF-TWTVIIT---NYAQTNQGEKALN 603
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 135/273 (49%), Gaps = 7/273 (2%)
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
L+N Y AR V ++ D+D+V W +++ G V +++ LF++M +EG+ P+
Sbjct: 153 LVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPN 212
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
E + + L ACS L G+ +H + + D FV +AL+D+Y+KCG +E A F
Sbjct: 213 EFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFI 272
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
++ VTW ++ G A G L++F M +K NE T +VL C +S + +
Sbjct: 273 GMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQ 332
Query: 337 GCQLFRRMGGVYRVQPTIEHFV-C-LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
G Q+ + + + F+ C LVD+ S+ GL A K + D + + AL++
Sbjct: 333 G-QVIHSL--IIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPD-IVVWSALIT 388
Query: 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427
+ + K+ ++M+LG+ Y + S
Sbjct: 389 CLDQQGQSEESIKLF-HLMRLGDTLPNQYTICS 420
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK 281
S+L C+S +L + +H I+++ I D+ + +L+++Y+KC A + K +
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDR 176
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
DVV+WT +I+GL G N+++ +F +M+ +GI PNE T + L AC + G Q+
Sbjct: 177 DVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMH 236
Query: 342 RRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ +++ ++ FV LVDL ++ G + A + MP ++ +++ LL+
Sbjct: 237 AQ---AFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQND-VTWNVLLNG 288
>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/446 (35%), Positives = 246/446 (55%), Gaps = 40/446 (8%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ D+ ++I Y ++ +AR+LFD+MP R+V SW T+++ Y + +V I K
Sbjct: 250 EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGY---VQNQQVDIARK- 305
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
LF ++ + A+L Y C
Sbjct: 306 ---------------LFEVMPEKNEVSW--------------------TAMLKGYTNCGR 330
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+DEA LF+ M +++V+ N +I + V AR+VFD++ +KD W +M+ +
Sbjct: 331 LDEASELFNAM-PIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYER 389
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+ALELF+ M EG+ P+ ++SVLS C+ L+NL +GR +H ++++ D +V
Sbjct: 390 KGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYV 449
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
+ L+ MY KCG+L +A F + KDVV W ++I G A +GLG EALRVF+ M GI
Sbjct: 450 ASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGI 509
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
P++ TFV VL+AC ++G + +G ++F M Y+V+ IEH+ C+VDLL RAG L +A
Sbjct: 510 MPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAM 569
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
+ I+ MP E I + ALL AC T+ + DL + A ++ L ++ ++LLSN YA +G
Sbjct: 570 DLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQG 629
Query: 435 HWTEVAEARRNMKELQTRKKPGNSII 460
W +VAE RRNM++ + K PG S I
Sbjct: 630 RWDDVAELRRNMRDRRVSKYPGCSWI 655
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 152/322 (47%), Gaps = 44/322 (13%)
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N+++ Y + K EA +FD+M S RN +S N L++GYI+ +++ AREVFD + ++++
Sbjct: 133 NSIVAGYFQNKRPQEAQNMFDKM-SERNTISWNGLVSGYINNGMINEAREVFDRMPERNV 191
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +M+ G VK EA LF +M ++ V VM+ L LQ GR+
Sbjct: 192 VSWTAMVRGYVKEGMISEAETLFWQMPEKNVV-SWTVMLGGL--------LQEGRIDEAC 242
Query: 243 ILQNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
L + + + D +T +I Y + G L EA + F + ++VV+WTTMI G +
Sbjct: 243 RLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDI 302
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM----------------- 344
A ++F M K NE ++ ++L + G + E +LF M
Sbjct: 303 ARKLFEVMPEK----NEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQ 358
Query: 345 -GGVYRVQPTIEH--------FVCLVDLLSRAGLLYQAEEFIKIMPAE---DKFISYKAL 392
G V + + + + ++ + R GL A E ++M E F S ++
Sbjct: 359 NGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISV 418
Query: 393 LSACITYSEFDLGKKVANNMMK 414
LS C + D G+++ +++
Sbjct: 419 LSVCAGLANLDHGREIHAQLVR 440
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 156/331 (47%), Gaps = 34/331 (10%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL------ 75
NSLI Y R+ ARV+FD+M +++ SWN++++ Y E +F ++
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTI 161
Query: 76 IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL--EYMLNMENALLLMYAKCK 133
+ G+V+ I ++ A +++ V A G E M++ L +
Sbjct: 162 SWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKN 221
Query: 134 ---------------EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+DEA RLFD M +++V+ +I GY + + AR +FDE+
Sbjct: 222 VVSWTVMLGGLLQEGRIDEACRLFDMM-PEKDVVTRTNMIGGYCQVGRLVEARMLFDEMP 280
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+++V W +M+ G V+ +Q + A +LF+ M E+ VS + +N GRL
Sbjct: 281 RRNVVSWTTMITGYVQNQQVDIARKLFEVM-------PEKNEVSWTAMLKGYTNC--GRL 331
Query: 239 VHRFILQNNITQDAFVK-TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
L N + + V A+I + + G + +A F + KD TW+ MI+ G
Sbjct: 332 DEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKG 391
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
L +AL +F M+R+GI+PN + +SVL+ C
Sbjct: 392 LELDALELFRMMQREGIRPNFPSLISVLSVC 422
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 121/262 (46%), Gaps = 18/262 (6%)
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
I+S N LI Y + ++ AR VFDE+ DK+I+ W S++ G + K+P+EA +F KM +
Sbjct: 98 IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
++S + + R V + + N+ TA++ Y K G + E
Sbjct: 158 RNTIS----WNGLVSGYINNGMINEAREVFDRMPERNVVS----WTAMVRGYVKEGMISE 209
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F++ K+VV+WT M+ GL G +EA R+F M K + T +++
Sbjct: 210 AETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYCQ 265
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
G + E LF M + + + ++ + + A + ++MP +++ +S+
Sbjct: 266 VGRLVEARMLFDEMP-----RRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNE-VSWT 319
Query: 391 ALLSACITYSEFDLGKKVANNM 412
A+L D ++ N M
Sbjct: 320 AMLKGYTNCGRLDEASELFNAM 341
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 75/145 (51%), Gaps = 1/145 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA + ++ D D+YV + L+ Y + A+ +FD+ +DV WN++++ Y
Sbjct: 431 GREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQ 490
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYMLN 120
E L +F + F GI+ D +T V + SAC+ + G + + TK +E +
Sbjct: 491 HGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIE 550
Query: 121 MENALLLMYAKCKEMDEALRLFDEM 145
++ + + +++EA+ L ++M
Sbjct: 551 HYACMVDLLGRAGKLNEAMDLIEKM 575
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/458 (32%), Positives = 255/458 (55%), Gaps = 6/458 (1%)
Query: 13 ALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLM-SIYNDFSDSGEVLI 70
ALD+D + + IH + ++ A LF + D+ +N ++ ++ + + +
Sbjct: 5 ALDTDNLLLSRFIHACSSLGFYSYAYSLFTSITHAPDIYLYNNIIKALSSSPTHPKASIF 64
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
L+ + G+ D + A R + G+ +H + + GL L++ A + MY+
Sbjct: 65 LYNNIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYS 124
Query: 131 KCKE--MDEALRLFDEMGSRRNIVSL-NILINGYIDMELVDLAREVFDEIVDKDIVLWRS 187
+ +A ++FD M V+L N ++NGY + AR++F+ + ++++ W +
Sbjct: 125 SFGSGCICDARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTA 184
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247
++ G +A +P +A+ LF++M E V PDE M+ L+AC+ L L+ G + +I +
Sbjct: 185 LITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLG 244
Query: 248 I-TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ T + + ALIDMY+K G ++ AL F + K ++TWTTMI GLA +GLG EAL +F
Sbjct: 245 LLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMF 304
Query: 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366
+MER +KPN+ TF+++L+AC H GL+ G F RM Y ++P IEH+ C++DLL R
Sbjct: 305 SRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGR 364
Query: 367 AGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLL 426
AG L +A+ + MP E + + +LL+AC T+ + +LG+ ++++L + Y LL
Sbjct: 365 AGHLKEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALL 424
Query: 427 SNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
SN YA G W E R+ M + +K PG S+I++ +
Sbjct: 425 SNIYASRGRWNESRVVRKVMWDAGVKKMPGGSLIEVNN 462
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 154/350 (44%), Gaps = 73/350 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY----------------------GRMALFT---- 35
G+ LH+ + L SD++V + + Y G +AL+
Sbjct: 97 GRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARKMFDGMSMSTGDVALWNAMLN 156
Query: 36 ---------DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKIT 86
+AR LF++MP R+V SW L++ Y + + + LF+++ E + D+I
Sbjct: 157 GYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIA 216
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVG-LEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
+++ +ACARL L G+ + Y ++G L + + NAL+ MYAK ++ AL++F+ M
Sbjct: 217 MLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENM 276
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
K I+ W +M+ G EALE+F
Sbjct: 277 N--------------------------------HKTIITWTTMIAGLALHGLGTEALEMF 304
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL-VHRFILQNNITQDAFVKTALIDMYSK 264
+M V P++ +++LSACS + +Q GR +R I + I +ID+ +
Sbjct: 305 SRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGR 364
Query: 265 CGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYG---LGNEALRVFYQME 310
G L+EA + + + V W +++ +G LG AL+ ++E
Sbjct: 365 AGHLKEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGELALQHLLELE 414
>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/446 (35%), Positives = 246/446 (55%), Gaps = 40/446 (8%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ D+ ++I Y ++ +AR+LFD+MP R+V SW T+++ Y + +V I K
Sbjct: 250 EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGY---VQNQQVDIARK- 305
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
LF ++ + A+L Y C
Sbjct: 306 ---------------LFEVMPEKNEVSW--------------------TAMLKGYTNCGR 330
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+DEA LF+ M +++V+ N +I + V AR+VFD++ +KD W +M+ +
Sbjct: 331 LDEASELFNAM-PIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYER 389
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+ALELF+ M EG+ P+ ++SVLS C+ L+NL +GR +H ++++ D +V
Sbjct: 390 KGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYV 449
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
+ L+ MY KCG+L +A F + KDVV W ++I G A +GLG EALRVF+ M GI
Sbjct: 450 ASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGI 509
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
P++ TFV VL+AC ++G + +G ++F M Y+V+ IEH+ C+VDLL RAG L +A
Sbjct: 510 MPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAM 569
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
+ I+ MP E I + ALL AC T+ + DL + A ++ L ++ ++LLSN YA +G
Sbjct: 570 DLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQG 629
Query: 435 HWTEVAEARRNMKELQTRKKPGNSII 460
W +VAE RRNM++ + K PG S I
Sbjct: 630 RWDDVAELRRNMRDRRVSKYPGCSWI 655
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 152/322 (47%), Gaps = 44/322 (13%)
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N+++ Y + K EA +FD+M S RN +S N L++GYI+ +++ AREVFD + ++++
Sbjct: 133 NSIVAGYFQNKRPQEAQNMFDKM-SERNTISWNGLVSGYINNGMINEAREVFDRMPERNV 191
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +M+ G VK EA LF +M ++ V VM+ L LQ GR+
Sbjct: 192 VSWTAMVRGYVKEGMISEAETLFWQMPEKNVV-SWTVMLGGL--------LQEGRIDEAC 242
Query: 243 ILQNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
L + + + D +T +I Y + G L EA + F + ++VV+WTTMI G +
Sbjct: 243 RLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDI 302
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM----------------- 344
A ++F M K NE ++ ++L + G + E +LF M
Sbjct: 303 ARKLFEVMPEK----NEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQ 358
Query: 345 -GGVYRVQPTIEH--------FVCLVDLLSRAGLLYQAEEFIKIMPAE---DKFISYKAL 392
G V + + + + ++ + R GL A E ++M E F S ++
Sbjct: 359 NGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISV 418
Query: 393 LSACITYSEFDLGKKVANNMMK 414
LS C + D G+++ +++
Sbjct: 419 LSVCAGLANLDHGREIHAQLVR 440
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 156/331 (47%), Gaps = 34/331 (10%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL------ 75
NSLI Y R+ ARV+FD+M +++ SWN++++ Y E +F ++
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTI 161
Query: 76 IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL--EYMLNMENALLLMYAKCK 133
+ G+V+ I ++ A +++ V A G E M++ L +
Sbjct: 162 SWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKN 221
Query: 134 ---------------EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+DEA RLFD M +++V+ +I GY + + AR +FDE+
Sbjct: 222 VVSWTVMLGGLLQEGRIDEACRLFDMM-PEKDVVTRTNMIGGYCQVGRLVEARMLFDEMP 280
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+++V W +M+ G V+ +Q + A +LF+ M E+ VS + +N GRL
Sbjct: 281 RRNVVSWTTMITGYVQNQQVDIARKLFEVM-------PEKNEVSWTAMLKGYTNC--GRL 331
Query: 239 VHRFILQNNITQDAFVK-TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
L N + + V A+I + + G + +A F + KD TW+ MI+ G
Sbjct: 332 DEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKG 391
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
L +AL +F M+R+GI+PN + +SVL+ C
Sbjct: 392 LELDALELFRMMQREGIRPNFPSLISVLSVC 422
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 121/262 (46%), Gaps = 18/262 (6%)
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
I+S N LI Y + ++ AR VFDE+ DK+I+ W S++ G + K+P+EA +F KM +
Sbjct: 98 IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
++S + + R V + + N+ TA++ Y K G + E
Sbjct: 158 RNTIS----WNGLVSGYINNGMINEAREVFDRMPERNVVS----WTAMVRGYVKEGMISE 209
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F++ K+VV+WT M+ GL G +EA R+F M K + T +++
Sbjct: 210 AETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYCQ 265
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
G + E LF M + + + ++ + + A + ++MP +++ +S+
Sbjct: 266 VGRLVEARMLFDEMP-----RRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNE-VSWT 319
Query: 391 ALLSACITYSEFDLGKKVANNM 412
A+L D ++ N M
Sbjct: 320 AMLKGYTNCGRLDEASELFNAM 341
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 75/145 (51%), Gaps = 1/145 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA + ++ D D+YV + L+ Y + A+ +FD+ +DV WN++++ Y
Sbjct: 431 GREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQ 490
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYMLN 120
E L +F + F GI+ D +T V + SAC+ + G + + TK +E +
Sbjct: 491 HGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIE 550
Query: 121 MENALLLMYAKCKEMDEALRLFDEM 145
++ + + +++EA+ L ++M
Sbjct: 551 HYACMVDLLGRAGKLNEAMDLIEKM 575
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 154/466 (33%), Positives = 254/466 (54%), Gaps = 12/466 (2%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMAL---FTDARVLFDKMPFRDVGSWNTLMS--IYN 60
H+ + + L S ++ LI+F R + T A LFD +P D +NT++ +++
Sbjct: 42 HSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTIIKGFLHS 101
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ +L+L+ ++ ++ + T L AC K+ +G +H + K G
Sbjct: 102 QLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIAC---RKIQHGMQIHAHLFKFGFGAHSV 158
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
N+L+ MY + ++EA R+F + + VS LI+GY L+D A +F + K
Sbjct: 159 CLNSLIHMYVTFQALEEARRVFHTI-PHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQK 217
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP-DEEVMVSVLSACSSLSNLQYGRLV 239
+ W +MM V+ + EA LF +M E D+ V ++LSAC+ L L G+ +
Sbjct: 218 NSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWI 277
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY--KTDCKDVVTWTTMIEGLANYG 297
H +I +N I D+ + TA++DMY KCG LE+AL F+ C+ + +W MI GLA +G
Sbjct: 278 HEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHG 337
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G A+++F +MER+ + P++ TF+++L AC HSGL+ EG F M VY ++P +EHF
Sbjct: 338 NGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHF 397
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RAG++ +A + I MP LL AC + +LG+++ +++L
Sbjct: 398 GCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEP 457
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ YVLL+N YA G W + A+ R+ M + +K PG S+I+L+
Sbjct: 458 NNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQ 503
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/413 (23%), Positives = 161/413 (38%), Gaps = 101/413 (24%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHF-------------------------------YGR 30
G +HAH+ K + NSLIH Y +
Sbjct: 141 GMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSK 200
Query: 31 MALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-GIVADKITLVI 89
L +A +F MP ++ SWN +M+ Y + E LF ++ E V DK
Sbjct: 201 WGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATT 260
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG-SR 148
+ SAC L L GK +H Y + G+E + A++ MY KC +++AL++F +
Sbjct: 261 MLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPC 320
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
R I S N +I G MHG E A++LFK+M
Sbjct: 321 RWISSWNCMIGGL--------------------------AMHG-----NGEAAIQLFKEM 349
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+ V PD+ +++L+AC+ ++ GR + +I +Y +
Sbjct: 350 ERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSY---------------MIRVYGIEPRM 394
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E + M++ L G+ EA ++ +M + P+ ++L AC
Sbjct: 395 EH---------------FGCMVDLLGRAGMVPEARKLIDEMP---VSPDVTVLGTLLGAC 436
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIE-HFVCLVDLLSRAGLLYQAEEFIKIM 380
+ I G ++ RR V ++P +V L +L + AG A + K+M
Sbjct: 437 KKHRNIELGEEIGRR---VIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLM 486
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/461 (31%), Positives = 243/461 (52%), Gaps = 33/461 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H V K+ ++ D ++ NSL++ Y + A +F ++P RDV SW L++ +
Sbjct: 210 GKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVA 269
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
G L +F Q++ EG + T + + +C+ L + GK VH K L+ +
Sbjct: 270 -EGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFV 328
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYAK + +++A +F+ ++ +D
Sbjct: 329 GTALVDMYAKNRFLEDA--------------------------------ETIFNRLIKRD 356
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W ++ G + Q E+A++ F +M EGV P+E + S LS CS ++ L GR +H
Sbjct: 357 LFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHS 416
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ + D FV +AL+DMY+KCG +E+A V F +D V+W T+I G + +G G +
Sbjct: 417 MAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGK 476
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL+ F M +G P+E TF+ VL+AC H GLI EG + F + +Y + PTIEH+ C+V
Sbjct: 477 ALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMV 536
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L RAG ++ E FI+ M + ++ +L AC + + G++ A + +L +
Sbjct: 537 DILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDS 596
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+LLSN +A +G W +V R M +K+PG S +++
Sbjct: 597 NYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEV 637
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 177/382 (46%), Gaps = 42/382 (10%)
Query: 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEV 68
V K + D ++ +SL++ Y + AR + ++MP +DV WN +S N E
Sbjct: 15 VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74
Query: 69 LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
+ LF + I ++ L SA A L HYG+++H K G E + + NA + M
Sbjct: 75 VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTM 134
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
Y K + ++ + F M N+ S N L++G+ D E D
Sbjct: 135 YMKTQSVENGWQFFKAM-MIENLASRNNLLSGFCDTETCD-------------------- 173
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ + +++ EG P+ +S+L C+S +L G+ +H ++++ I
Sbjct: 174 -----------QGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGI 222
Query: 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
D+ + +L+++Y+KCGS A F + +DVV+WT +I G G G+ LR+F Q
Sbjct: 223 NPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGS-GLRIFNQ 281
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE--HFV--CLVDLL 364
M +G PN TF+S+L +C + G Q+ ++ V+ +++ FV LVD+
Sbjct: 282 MLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQI-----VKNSLDGNDFVGTALVDMY 336
Query: 365 SRAGLLYQAEEFIKIMPAEDKF 386
++ L AE + D F
Sbjct: 337 AKNRFLEDAETIFNRLIKRDLF 358
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 32/237 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA + K +LD + +VG +L+ Y + DA +F+++ RD+ +W +++ Y
Sbjct: 309 LGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYA 368
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + F Q+ EG+ ++ TL S C+R+ L G+ +H A K G +
Sbjct: 369 QDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMF 428
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +AL+ MYAKC +++A +FD + S R+ VS N +I GY
Sbjct: 429 VASALVDMYAKCGCVEDAEVVFDGLVS-RDTVSWNTIICGY------------------- 468
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
HG Q +AL+ F+ M+DEG PDE + VLSACS + ++ G+
Sbjct: 469 -------SQHG-----QGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGK 513
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 122/262 (46%), Gaps = 7/262 (2%)
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
L+N Y+ E + AR+V +E+ +D+ W + +EA++LF M + +
Sbjct: 30 LVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIRLN 89
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
+ + S++SA +SL + YG +H + + D + A + MY K S+E F
Sbjct: 90 QFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFK 149
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
+++ + ++ G + ++ R+ Q+ +G +PN TF+S+L C G + E
Sbjct: 150 AMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNE 209
Query: 337 GCQLFRRMGGVYR--VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
G + G V + + P + LV++ ++ G A + +P D +S+ AL++
Sbjct: 210 GKAIH---GQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD-VVSWTALIT 265
Query: 395 ACITYSEFDLGKKVANNMMKLG 416
+ + G ++ N M+ G
Sbjct: 266 GFVAEG-YGSGLRIFNQMLAEG 286
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/460 (33%), Positives = 239/460 (51%), Gaps = 32/460 (6%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HA VT T + D+ V N L++ + A +LF+KM RD SW+ ++ +
Sbjct: 20 KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKN 79
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
D F++LI G D +L + AC L G+ +H K GL +
Sbjct: 80 GDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVC 139
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
+ L+ MYAKC ++D A+++FD + KD+
Sbjct: 140 STLVDMYAKCG--------------------------------MIDNAKQLFDRMPKKDL 167
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V M+ G + +P E+ LF +M +G PD+ MV++++AC+ L + RLVH +
Sbjct: 168 VTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDY 227
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+ + D + TA+IDMY+KCGS++ + F + + K+V++W+ MI +G G EA
Sbjct: 228 VCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREA 287
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F+ M GI PN TF+S+L AC H+GL+ +G QLF M Y V+P ++H+ C+VD
Sbjct: 288 LELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVD 347
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL RAG L QA I+ M E + A L AC + + DL +K A ++ L Q+
Sbjct: 348 LLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGH 407
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+LLSN YA G W +VA+ R M + + +K PG + I++
Sbjct: 408 YILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEV 447
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 133/273 (48%), Gaps = 33/273 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +H+ V K L D +V ++L+ Y + + +A+ LFD+MP +D+ + +++ Y
Sbjct: 119 MGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYA 178
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E +LF Q+ +G V DK+ +V + +ACA+L ++ + VH Y +
Sbjct: 179 ECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVE 238
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ A++ MYAKC +D + +FD M ++N++S + +I Y
Sbjct: 239 LGTAMIDMYAKCGSIDSSREIFDRM-EQKNVISWSAMIGAY------------------- 278
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLV 239
HG Q EALELF M++ G+ P+ +S+L ACS + G +L
Sbjct: 279 -------GYHG-----QGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLF 326
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ + D T ++D+ + G L++AL
Sbjct: 327 SLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQAL 359
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 10/172 (5%)
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
D + +S L C ++ ++ VH + I D V L+ M +K L A + F
Sbjct: 2 DPDFFISTLFKCRNIFQIKQ---VHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLF 58
Query: 276 YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS-GLI 334
K + +D V+W+ MI G G + F ++ R G KP+ + V+ ACR + GLI
Sbjct: 59 NKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLI 118
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAED 384
+L V + +++FVC LVD+ ++ G++ A++ MP +D
Sbjct: 119 MG--RLIHST--VLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKD 166
>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 730
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 156/497 (31%), Positives = 255/497 (51%), Gaps = 68/497 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LHA + + L +++V NSL+ Y + + AR LF+ M RD SWNT++S Y
Sbjct: 213 GKKLHASINASCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYAS 272
Query: 62 FSDSGEVLILFKQLIFEGI---------VA--------------------------DKIT 86
E LF ++ EGI +A D +
Sbjct: 273 KGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVA 332
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+I AC+ + + G+ +H A + + + N++NAL+ MY++CK + A LF
Sbjct: 333 TIIGLGACSHIGAIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTR 392
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
+ K+I+ W SM+ G + EEA LF+
Sbjct: 393 T--------------------------------KNIITWNSMLSGYTHMDRSEEASFLFR 420
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD-AFVKTALIDMYSKC 265
+M+ G+ P+ + S+L C+ ++NLQ+G+ H +IL+ +D + +L+DMY++
Sbjct: 421 EMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARS 480
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G + EA F +D VT+T++I G G G EAL++F +M+++ IKP+ T V+VL
Sbjct: 481 GKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVL 540
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+AC HSGL+TEG +LF M Y + P +EHF C+VDL RAGLL++A+E I MP
Sbjct: 541 SACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRPS 600
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
+ LL AC + ++G+ A ++++ ++ YVL++N YA G W+++A+ R
Sbjct: 601 SAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKLAKVRTY 660
Query: 446 MKELQTRKKPGNSIIDL 462
M++L RK PG + +D+
Sbjct: 661 MRDLGVRKAPGCAWVDV 677
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 191/402 (47%), Gaps = 14/402 (3%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH + + + L+ FY L DA + + WN L+S Y
Sbjct: 112 GKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVR 171
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
GE L +KQ+ +GI DK T + AC + +GK +H L + L +
Sbjct: 172 NGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFV 231
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI---- 177
N+L+ MYAK E+ A LF+ M R+ VS N +I+GY + A E+F ++
Sbjct: 232 HNSLVSMYAKTGELSTARCLFENM-LERDDVSWNTMISGYASKGMWKEAFELFGKMRVEG 290
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
++ +I+ W ++ GCV++ EEALEL M G+ D + L ACS + ++ GR
Sbjct: 291 IELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGR 350
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H +++ VK ALI MYS+C L A F T K+++TW +M+ G +
Sbjct: 351 EIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMD 410
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG----CQLFRRMGGVYRVQPT 353
EA +F +M GI+PN T S+L C + G C + RR G +
Sbjct: 411 RSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAG----FKDY 466
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ + LVD+ +R+G + +A+ + D+ ++Y +L++
Sbjct: 467 LLLWNSLVDMYARSGKVLEAKRLFDSISRRDE-VTYTSLIAG 507
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 143/334 (42%), Gaps = 68/334 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H ++ D V N+LI Y R A LF +++ +WN+++S Y
Sbjct: 348 LGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYT 407
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYA-TKVGLEYML 119
S E LF++++ GI + +T+ + CAR+ L +GK HCY + G + L
Sbjct: 408 HMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYL 467
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ N+L+ MYA+ ++ EA RLFD + SRR+ V+ LI GY
Sbjct: 468 LLWNSLVDMYARSGKVLEAKRLFDSI-SRRDEVTYTSLIAGY------------------ 508
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RL 238
+ G + EAL+LF +M + PD MV+VLSACS + G +L
Sbjct: 509 --------GIQG-----EGREALKLFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEGIKL 555
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
I ++D++ + G L +A K+++T
Sbjct: 556 FELMPSAYGIIPRLEHFACMVDLFGRAGLLHKA---------KEMIT------------- 593
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
R +P+ A + ++L ACR G
Sbjct: 594 ------------RMPYRPSSAMWATLLGACRIHG 615
>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
Length = 693
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 168/534 (31%), Positives = 267/534 (50%), Gaps = 72/534 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H H+ KT L D++VG+SL++ Y + F DA LFD+ P RDVG WN ++S Y
Sbjct: 125 GRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFK 184
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L F ++ G + +T ++ S+C RL L GK VH + + +
Sbjct: 185 DGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFV 244
Query: 122 ENALLLMYAKCKEMDEA-----------------------------------LRLFDEMG 146
+AL+ MY KC ++ A +R+ DE G
Sbjct: 245 LSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDE-G 303
Query: 147 SRRNIVSLNILI---------------NGYI-----------DMELVDL---------AR 171
++ +++L +I +GYI D+ L+D A
Sbjct: 304 TKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAE 363
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
+F I ++V W M+ G V +AL ++ M + V PD S LSACS L+
Sbjct: 364 TIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLA 423
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L GR +H I+ + + + V AL+DMY+KCG ++EA F++ +D+V+WT+MI
Sbjct: 424 ALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIF 483
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
++G +EALR+F +M++ ++ + TF++VL+AC H+GL+ EG F M Y ++
Sbjct: 484 AYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIK 543
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS-YKALLSACITYSEFDLGKKVAN 410
P IEH+ CL+DLL RAG L++A E ++ I L SAC+ ++ F LG ++
Sbjct: 544 PGIEHYSCLIDLLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGK 603
Query: 411 NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
++++ Y+LLSN YA W EV + RR MKEL +K PG S I++
Sbjct: 604 MLIEVDPDDPSTYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWIEINQ 657
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 116/399 (29%), Positives = 189/399 (47%), Gaps = 42/399 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLF--DKMPFRDVGSWNTLMSIY 59
GK +H + S+I + SLI FY + A ++F + P DV WN L+S Y
Sbjct: 22 GKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTNDCPL-DVSLWNALLSAY 80
Query: 60 NDFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ E L LF QL V D T ++ AC L ++ YG+ +H + K GL +
Sbjct: 81 TNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWD 140
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + ++L+ MYAKC + +A++LFDE R
Sbjct: 141 VFVGSSLMNMYAKCDQFVDAIKLFDEFPQR------------------------------ 170
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D+ W +++ K + E AL+ F KM + G P+ V+S+C+ L NL+ G+
Sbjct: 171 --DVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKE 228
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VHR +++ I DAFV +AL+DMY KCG LE A F K K+ +TW MI G + G
Sbjct: 229 VHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGD 288
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF- 357
+ + +M +G KP T S++ A S + G + G + R + ++ F
Sbjct: 289 SRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIH---GYILRNRIDVDIFI 345
Query: 358 -VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
V L+D + G + AE + + ++++ +S+ ++S
Sbjct: 346 DVSLIDFYFKCGYVSSAETIFRTI-SKNEVVSWNVMISG 383
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 139/316 (43%), Gaps = 38/316 (12%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D +TL+ C + L GK +H G + + + +L+ Y C + A +F
Sbjct: 2 DYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVF 61
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
+ N L D+ LW +++ + EAL
Sbjct: 62 -----QTNDCPL--------------------------DVSLWNALLSAYTNNFRFVEAL 90
Query: 203 ELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
+LF ++ + V PD VL AC L + YGR +H +L+ + D FV ++L++M
Sbjct: 91 QLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNM 150
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y+KC +A+ F + +DV W +I G AL+ F +M+ G +PN TF
Sbjct: 151 YAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTF 210
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKI 379
V+++C + G ++ R + + ++ FV LVD+ + G L A+E +
Sbjct: 211 TVVVSSCTRLLNLERGKEVHREL---IERRILLDAFVLSALVDMYGKCGCLEMAKEVFEK 267
Query: 380 MPAEDKFISYKALLSA 395
+P ++ I++ A+++
Sbjct: 268 IPRKNA-ITWNAMITG 282
>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 558
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/428 (34%), Positives = 236/428 (55%), Gaps = 39/428 (9%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR +F ++P D ++NT++ ++ F S + F + GI D T + AC+R
Sbjct: 41 ARYVFSRIPSPDTIAYNTIIRSHSRFFPSHSLFYFF-SMRSNGIPLDNFTFPFVLKACSR 99
Query: 97 LE-KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLN 155
L+ LH +H K GL+ + ++NAL+ +Y C ++ A+++FDEM R
Sbjct: 100 LQINLH----LHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSER------- 148
Query: 156 ILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVT 214
D V W +++ + EAL+LF+KM +++ V
Sbjct: 149 -------------------------DSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVV 183
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
PDE M+SV+SA S L +L+ GR V FI + + + TALIDM+S+CGS++E++V
Sbjct: 184 PDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVV 243
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F K ++V+TWT +I GL +G EAL +F+ M + G++P+ TF VL AC H GL+
Sbjct: 244 FEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLV 303
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
EG +F + VYR+ P ++H+ C+VD+L RAGLL +A +F++ MP + I ++ LL
Sbjct: 304 KEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLG 363
Query: 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK 454
AC+ ++ L +KV + K+ + + VLLSN Y G W E A R M+E + K+
Sbjct: 364 ACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKE 423
Query: 455 PGNSIIDL 462
PG S I++
Sbjct: 424 PGCSSINV 431
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 151/325 (46%), Gaps = 66/325 (20%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LH+ + K LDSDI+V N+LI YG A +FD+M RD SW+T+++ + +
Sbjct: 106 LHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGY 165
Query: 65 SGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
+ E L LF+++ E +V D++T++ + SA + L L G+ V + ++GL + +
Sbjct: 166 ASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGT 225
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ M+++C +DE++ +F++M RN+++ LING
Sbjct: 226 ALIDMFSRCGSIDESIVVFEKMAV-RNVLTWTALINGL---------------------- 262
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
+HG + EAL +F M GV PD VL ACS +G LV
Sbjct: 263 ----GVHG-----RSTEALAMFHSMRKSGVQPDYVTFSGVLVACS------HGGLVKE-- 305
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
D F E++ Y+ D + + M++ L GL NEA
Sbjct: 306 -----GWDIF----------------ESIRKVYRMD-PLLDHYGCMVDILGRAGLLNEA- 342
Query: 304 RVFYQMERKGIKPNEATFVSVLAAC 328
+ +ER +KPN + ++L AC
Sbjct: 343 --YDFVERMPMKPNSIIWRTLLGAC 365
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 128/279 (45%), Gaps = 9/279 (3%)
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
E + AR VF I D + + +++ + P +L F M G+ D VL
Sbjct: 36 ESLSYARYVFSRIPSPDTIAYNTIIRSHSRF-FPSHSLFYFFSMRSNGIPLDNFTFPFVL 94
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
ACS LQ +H I++ + D FV+ ALI +Y CGSLE A+ F + +D V
Sbjct: 95 KACS---RLQINLHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSV 151
Query: 285 TWTTMIEGLANYGLGNEALRVFYQME-RKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
+W+T+I N G +EAL +F +M+ + P+E T +SV++A H G + G + R
Sbjct: 152 SWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELG-RWVRA 210
Query: 344 MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
G + ++ L+D+ SR G + ++ + M + +++ AL++ +
Sbjct: 211 FIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRN-VLTWTALINGLGVHGRST 269
Query: 404 LGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442
+ ++M K G Q YV S H V E
Sbjct: 270 EALAMFHSMRKSGVQPD--YVTFSGVLVACSHGGLVKEG 306
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 79/174 (45%), Gaps = 1/174 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + A + + L + +G +LI + R ++ V+F+KM R+V +W L++
Sbjct: 204 LGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLG 263
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
S E L +F + G+ D +T + AC+ + G + KV ++ +L
Sbjct: 264 VHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLL 323
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
+ ++ + + ++EA + M + N + L+ ++ + LA +V
Sbjct: 324 DHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKV 377
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/463 (32%), Positives = 257/463 (55%), Gaps = 24/463 (5%)
Query: 2 GKGLHAHVTKT-ALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
GK LHA+ K +LD + +VG++L+ Y R +FD M R +G WN +++ Y+
Sbjct: 321 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 380
Query: 61 DFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L+LF + G++A+ T+ + AC R + +H + K GL+
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 440
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++N L+ MY++ ++D A+R+F +M R++V+ N +I GY VF E +
Sbjct: 441 FVQNTLMDMYSRLGKIDIAMRIFGKM-EDRDLVTWNTMITGY-----------VFSEHHE 488
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
++L M + K + + L P+ ++++L +C++LS L G+ +
Sbjct: 489 DALLLLHKMQNLERKVSKGASRVSL---------KPNSITLMTILPSCAALSALAKGKEI 539
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + ++NN+ D V +AL+DMY+KCG L+ + F + K+V+TW +I +G G
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 599
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA+ + M +G+KPNE TF+SV AAC HSG++ EG ++F M Y V+P+ +H+ C
Sbjct: 600 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 659
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAE-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
+VDLL RAG + +A + + +MP + +K ++ +LL A ++ ++G+ A N+++L
Sbjct: 660 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN 719
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YVLL+N Y+ G W + E RRNMKE RK+PG S I+
Sbjct: 720 VASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 173/378 (45%), Gaps = 48/378 (12%)
Query: 1 MGKGLHAHVTKTALDSD-IYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+GK +HAHV K D + V N+L++ Y + F +FD++ R+ SWN+L+S
Sbjct: 115 LGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSL 174
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL---EKLHYGKTVHCYATKVGLE 116
F L F+ ++ E + TLV + +AC+ L E L GK VH Y + G E
Sbjct: 175 CSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-E 233
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ N L+ MY K ++ + L G R
Sbjct: 234 LNSFIINTLVAMYGKLGKLASSKVLLGSFGGR---------------------------- 265
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
D+V W +++ + +Q EALE ++M+ EGV PDE + SVL ACS L L+ G
Sbjct: 266 ----DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321
Query: 237 RLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
+ +H + L+N ++ +++FV +AL+DMY C + F + + W MI G +
Sbjct: 322 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQ 381
Query: 296 YGLGNEALRVFYQMERK-GIKPNEATFVSVLAACRHSGLIT--EGCQLFRRMGGVYRVQP 352
EAL +F ME G+ N T V+ AC SG + E F G+ R
Sbjct: 382 NEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR--- 438
Query: 353 TIEHFV--CLVDLLSRAG 368
+ FV L+D+ SR G
Sbjct: 439 --DRFVQNTLMDMYSRLG 454
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 125/278 (44%), Gaps = 37/278 (13%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY-MLNMENAL 125
E ++ + +I GI D L A A L+ + GK +H + K G + + N L
Sbjct: 80 EAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTL 139
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+ +Y KC + + VFD I +++ V W
Sbjct: 140 VNLYRKCGDFGAVYK--------------------------------VFDRISERNQVSW 167
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS---NLQYGRLVHRF 242
S++ ++ E ALE F+ M+DE V P +VSV++ACS+L L G+ VH +
Sbjct: 168 NSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY 227
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
L+ ++F+ L+ MY K G L + V +D+VTW T++ L EA
Sbjct: 228 GLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEA 286
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
L +M +G++P+E T SVL AC H ++ G +L
Sbjct: 287 LEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324
>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Vitis vinifera]
Length = 719
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/462 (33%), Positives = 244/462 (52%), Gaps = 34/462 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDA-RVLFDKMPFRDVGSWNTLMSIYNDFS 63
LH+ + DS + V N+L+ +YG+ DA RV + RD SWN+++ Y
Sbjct: 160 LHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQ 219
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
+ + L LF++++ G+ D TL + +A LE L G H K G ++ +
Sbjct: 220 EGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGS 279
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
L+ +Y+KC G D R+VF+EI + D+V
Sbjct: 280 GLIDLYSKCG-------------------------GGMSD------CRKVFEEITEPDLV 308
Query: 184 LWRSMMHGCVKAKQ-PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
LW +M+ G + ++ E+ALE F++M G P++ V V+SACS+LS+ G+ +H
Sbjct: 309 LWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368
Query: 243 ILQNNITQDAF-VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
L+++I + V ALI MYSKCG+L++A F + + V+ +MI G A +G+ E
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEME 428
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
+L +F M + I P TF+SVL+AC H+G + EG F M + ++P EH+ C++
Sbjct: 429 SLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMI 488
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +AE I MP I + +LL AC T+ +L K AN +++L +
Sbjct: 489 DLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAA 548
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YV+LSN YA G W EVA R+ M++ +KKPG S I++K
Sbjct: 549 PYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVK 590
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 162/328 (49%), Gaps = 35/328 (10%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
D +++ N++I Y + + A LFD++P D+ S+NTL+S Y D ++ L LF
Sbjct: 71 DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+ G+ D TL + +AC + + +H A G + +++ NALL Y K +
Sbjct: 131 MREMGLDMDGFTLSAVITACC--DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+D+A R+F MG R+ VS W SM+ +
Sbjct: 189 LDDAKRVFYGMGGIRDEVS-------------------------------WNSMIVAYGQ 217
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
++ +AL LF++M+ G+ D + SVL+A + L +L G H +++ Q++ V
Sbjct: 218 HQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHV 277
Query: 255 KTALIDMYSKC-GSLEEALVTFYKTDCKDVVTWTTMIEGLA-NYGLGNEALRVFYQMERK 312
+ LID+YSKC G + + F + D+V W TM+ G + N +AL F QM+
Sbjct: 278 GSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGI 337
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQL 340
G +PN+ +FV V++AC + ++G Q+
Sbjct: 338 GYRPNDCSFVCVISACSNLSSPSQGKQI 365
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 144/324 (44%), Gaps = 42/324 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMAL-FTDARVLFDKMPFRDVGSWNTLMSIYN 60
G H + KT + +VG+ LI Y + +D R +F+++ D+ WNT++S Y+
Sbjct: 259 GLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYS 318
Query: 61 DFSDSGE-VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY-M 118
+ E L F+Q+ G + + V + SAC+ L GK +H A K +
Sbjct: 319 QNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNR 378
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++++NAL+ MY+KC + +A RLFD M + N VSLN +I GY
Sbjct: 379 ISVDNALIAMYSKCGNLQDARRLFDRM-AEHNTVSLNSMIAGY----------------- 420
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
HG E+L LF+ M++ + P +SVLSAC+ ++ G
Sbjct: 421 ---------AQHGI-----EMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWN 466
Query: 239 VHRFILQN-NITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLAN 295
+ + NI +A + +ID+ + G L EA L+ + + W +++
Sbjct: 467 YFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFN-PGSIGWASLLGACRT 525
Query: 296 YG---LGNEALRVFYQMERKGIKP 316
+G L +A Q+E P
Sbjct: 526 HGNIELAVKAANQVLQLEPSNAAP 549
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 113/239 (47%), Gaps = 4/239 (1%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L C L GK++H K + N +L+Y+KC + A + F ++ S
Sbjct: 14 LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDI-SDP 72
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N+ S N +I Y +A ++FD+I + D+V + +++ + AL LF M
Sbjct: 73 NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+ G+ D + +V++AC L G+L H + + V AL+ Y K G L+
Sbjct: 133 EMGLDMDGFTLSAVITACCDDVGL-IGQL-HSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190
Query: 270 EALVTFYK-TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+A FY +D V+W +MI + G++AL +F +M R+G+ + T SVL A
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA 249
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 159/480 (33%), Positives = 265/480 (55%), Gaps = 24/480 (5%)
Query: 3 KGLHAHVTKTAL---DSDIYVGNSLIHF--YGRMALFTDARVLFDKMPFRDVGSWNTLMS 57
K +H H+ K+ + Y+ L++F + A F A +F + + ++ +N ++
Sbjct: 36 KIIHTHILKSPILHTRDQYYLFTRLLYFCSFSNYASFNYANNVFHMIKYPELRVYNIMIR 95
Query: 58 IY------NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV----H 107
Y +D + + L+L+KQ++ +GIV + +T L C+RL+ YG TV H
Sbjct: 96 SYGCIEGGDDSNCCYKALMLYKQMLNKGIVPNNLTFPFLVKGCSRLQ---YGGTVGEVIH 152
Query: 108 CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
+ K G + + N+L+ ++ A ++FDEM R++VS N ++ GY+ V
Sbjct: 153 AHVLKFGFLNDVFVGNSLISLFMNFGLSKNARKVFDEM-FVRDVVSWNSMVVGYLRNGEV 211
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI----DEGVTPDEEVMVSV 223
++A +F ++ ++I+ W S++ G V+A +E+LE+F +M D+ V PD+ + SV
Sbjct: 212 EMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASV 271
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
LSAC+ L ++ +G+ VH ++ +N+I D + TAL++MY KCG +++A+ F KD
Sbjct: 272 LSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDA 331
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
WT MI A +G G +A F +ME+ G+KPN TFV +L+AC HSGL+ +G F
Sbjct: 332 SAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDV 391
Query: 344 MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
M VY ++P I H+ C+VD+LSRA L +A I+ MP + + ALL C +
Sbjct: 392 MKRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSMPMKPDVYVWGALLGGCQMHGNIK 451
Query: 404 LGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK-PGNSIIDL 462
LG+KVA+ ++ L +H Y+ L + Y G + R +MKE K PG SII++
Sbjct: 452 LGEKVAHYLIDLEPHNHAFYINLCDIYVKAGKYDAAKRIRNSMKERGIETKIPGCSIIEI 511
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 144/334 (43%), Gaps = 69/334 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +HAHV K +D++VGNSLI + L +AR +FD+M RDV SWN+++ Y
Sbjct: 147 VGEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYL 206
Query: 61 DFSDSGEVLILFKQL----------IFEGIV-------------------------ADKI 85
+ L LF+++ I G+V DKI
Sbjct: 207 RNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKI 266
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T+ + SACA L + +GK VH Y K +E + + AL+ MY KC ++ +A+
Sbjct: 267 TIASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAI------ 320
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
E+F+++ +KD W +M+ ++A + F
Sbjct: 321 --------------------------EIFNDMPEKDASAWTAMISVFALHGFGKKAFDCF 354
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NNITQDAFVKTALIDMYSK 264
+M GV P+ V +LSACS ++ GR + + +I + ++D+ S+
Sbjct: 355 LEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQIYHYACMVDILSR 414
Query: 265 CGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYG 297
+EAL K DV W ++ G +G
Sbjct: 415 ARLFDEALFLIRSMPMKPDVYVWGALLGGCQMHG 448
>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
Length = 719
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/462 (33%), Positives = 244/462 (52%), Gaps = 34/462 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDA-RVLFDKMPFRDVGSWNTLMSIYNDFS 63
LH+ + DS + V N+L+ +YG+ DA RV + RD SWN+++ Y
Sbjct: 160 LHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQ 219
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
+ + L LF++++ G+ D TL + +A LE L G H K G ++ +
Sbjct: 220 EGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGS 279
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
L+ +Y+KC G D R+VF+EI + D+V
Sbjct: 280 GLIDLYSKCG-------------------------GGMSD------CRKVFEEITEPDLV 308
Query: 184 LWRSMMHGCVKAKQ-PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
LW +M+ G + ++ E+ALE F++M G P++ V V+SACS+LS+ G+ +H
Sbjct: 309 LWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368
Query: 243 ILQNNITQDAF-VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
L+++I + V ALI MYSKCG+L++A F + + V+ +MI G A +G+ E
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEME 428
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
+L +F M + I P TF+SVL+AC H+G + EG F M + ++P EH+ C++
Sbjct: 429 SLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMI 488
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +AE I MP I + +LL AC T+ +L K AN +++L +
Sbjct: 489 DLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAA 548
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YV+LSN YA G W EVA R+ M++ +KKPG S I++K
Sbjct: 549 PYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVK 590
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 162/328 (49%), Gaps = 35/328 (10%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
D +++ N++I Y + + A LFD++P D+ S+NTL+S Y D ++ L LF
Sbjct: 71 DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+ G+ D TL + +AC + + +H A G + +++ NALL Y K +
Sbjct: 131 MREMGLDMDXFTLSAVITACC--DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+D+A R+F MG R+ VS W SM+ +
Sbjct: 189 LDDAKRVFYGMGGIRDEVS-------------------------------WNSMIVAYGQ 217
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
++ +AL LF++M+ G+ D + SVL+A + L +L G H +++ Q++ V
Sbjct: 218 HQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHV 277
Query: 255 KTALIDMYSKC-GSLEEALVTFYKTDCKDVVTWTTMIEGLA-NYGLGNEALRVFYQMERK 312
+ LID+YSKC G + + F + D+V W TM+ G + N +AL F QM+
Sbjct: 278 GSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGI 337
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQL 340
G +PN+ +FV V++AC + ++G Q+
Sbjct: 338 GYRPNDCSFVCVISACSNLSSPSQGKQI 365
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 144/324 (44%), Gaps = 42/324 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMAL-FTDARVLFDKMPFRDVGSWNTLMSIYN 60
G H + KT + +VG+ LI Y + +D R +F+++ D+ WNT++S Y+
Sbjct: 259 GLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYS 318
Query: 61 DFSDSGE-VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY-M 118
+ E L F+Q+ G + + V + SAC+ L GK +H A K +
Sbjct: 319 QNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNR 378
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++++NAL+ MY+KC + +A RLFD M + N VSLN +I GY
Sbjct: 379 ISVDNALIAMYSKCGNLQDARRLFDRM-AEHNTVSLNSMIAGY----------------- 420
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
HG E+L LF+ M++ + P +SVLSAC+ ++ G
Sbjct: 421 ---------AQHGI-----EMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWN 466
Query: 239 VHRFILQN-NITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLAN 295
+ + NI +A + +ID+ + G L EA L+ + + W +++
Sbjct: 467 YFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFN-PGSIGWASLLGACRT 525
Query: 296 YG---LGNEALRVFYQMERKGIKP 316
+G L +A Q+E P
Sbjct: 526 HGNIELAVKAANQVLQLEPSNAAP 549
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 113/239 (47%), Gaps = 4/239 (1%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L C L GK++H K + N +L+Y+KC + A + F ++ S
Sbjct: 14 LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDI-SDP 72
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N+ S N +I Y +A ++FD+I + D+V + +++ + AL LF M
Sbjct: 73 NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+ G+ D + +V++AC L G+L H + + V AL+ Y K G L+
Sbjct: 133 EMGLDMDXFTLSAVITACCDDVGL-IGQL-HSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190
Query: 270 EALVTFYK-TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+A FY +D V+W +MI + G++AL +F +M R+G+ + T SVL A
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA 249
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/463 (32%), Positives = 257/463 (55%), Gaps = 24/463 (5%)
Query: 2 GKGLHAHVTKT-ALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
GK LHA+ K +LD + +VG++L+ Y R +FD M R +G WN +++ Y+
Sbjct: 321 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 380
Query: 61 DFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L+LF + G++A+ T+ + AC R + +H + K GL+
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 440
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++N L+ MY++ ++D A+R+F +M R++V+ N +I GY VF E +
Sbjct: 441 FVQNTLMDMYSRLGKIDIAMRIFGKM-EDRDLVTWNTMITGY-----------VFSEHHE 488
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
++L M + K + + L P+ ++++L +C++LS L G+ +
Sbjct: 489 DALLLLHKMQNLERKVSKGASRVSL---------KPNSITLMTILPSCAALSALAKGKEI 539
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + ++NN+ D V +AL+DMY+KCG L+ + F + K+V+TW +I +G G
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 599
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA+ + M +G+KPNE TF+SV AAC HSG++ EG ++F M Y V+P+ +H+ C
Sbjct: 600 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 659
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAE-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
+VDLL RAG + +A + + +MP + +K ++ +LL A ++ ++G+ A N+++L
Sbjct: 660 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN 719
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YVLL+N Y+ G W + E RRNMKE RK+PG S I+
Sbjct: 720 VASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 173/378 (45%), Gaps = 48/378 (12%)
Query: 1 MGKGLHAHVTKTALDSD-IYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+GK +HAHV K D + V N+L++ Y + F +FD++ R+ SWN+L+S
Sbjct: 115 LGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSL 174
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL---EKLHYGKTVHCYATKVGLE 116
F L F+ ++ E + TLV + +AC+ L E L GK VH Y + G E
Sbjct: 175 CSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-E 233
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ N L+ MY K ++ + L G R
Sbjct: 234 LNSFIINTLVAMYGKLGKLASSKVLLGSFGGR---------------------------- 265
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
D+V W +++ + +Q EALE ++M+ EGV PDE + SVL ACS L L+ G
Sbjct: 266 ----DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321
Query: 237 RLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
+ +H + L+N ++ +++FV +AL+DMY C + F + + W MI G +
Sbjct: 322 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQ 381
Query: 296 YGLGNEALRVFYQMERK-GIKPNEATFVSVLAACRHSGLIT--EGCQLFRRMGGVYRVQP 352
EAL +F ME G+ N T V+ AC SG + E F G+ R
Sbjct: 382 NEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR--- 438
Query: 353 TIEHFV--CLVDLLSRAG 368
+ FV L+D+ SR G
Sbjct: 439 --DRFVQNTLMDMYSRLG 454
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 125/278 (44%), Gaps = 37/278 (13%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY-MLNMENAL 125
E ++ + +I GI D L A A L+ + GK +H + K G + + N L
Sbjct: 80 EAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTL 139
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+ +Y KC + + VFD I +++ V W
Sbjct: 140 VNLYRKCGDFGAVYK--------------------------------VFDRISERNQVSW 167
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS---NLQYGRLVHRF 242
S++ ++ E ALE F+ M+DE V P +VSV++ACS+L L G+ VH +
Sbjct: 168 NSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY 227
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
L+ ++F+ L+ MY K G L + V +D+VTW T++ L EA
Sbjct: 228 GLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEA 286
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
L +M +G++P+E T SVL AC H ++ G +L
Sbjct: 287 LEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/453 (32%), Positives = 239/453 (52%), Gaps = 9/453 (1%)
Query: 19 YVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE 78
++ +L+ Y + AR LFD+MP + + + + + + + +F ++ +
Sbjct: 46 HLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVAD 105
Query: 79 GIVADKITLVILFSAC----ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
G+ D + + + AC + + + GK +H G+ + + L+ +Y + E
Sbjct: 106 GVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGE 165
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+ + R+FD+M SR I + N +++ Y VD A E+F + +D+V W +++ G
Sbjct: 166 LPVSRRVFDDMPSRSTI-TWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCV 224
Query: 195 AKQPEEALELFKKMIDE---GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
A + EAL LF++M+ V P+ M ++L AC+ L+ G VH +I +N + D
Sbjct: 225 AGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDD 284
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTD-CKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
++ LIDMY KCGS++ AL F K KD+ +WTT+I GLA +G +ALR+F M+
Sbjct: 285 GYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQ 344
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370
GI P++ T V VL AC H GL+ EG F M +R+ P IEH+ C++DLL R G L
Sbjct: 345 DNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRL 404
Query: 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430
+A I+ MP + + + A LSAC + +LGK A + +L V+LS+ Y
Sbjct: 405 QEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMY 464
Query: 431 ALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A W +A RR M +Q +K PG S I+LK
Sbjct: 465 AKAQDWIGLARERREMNSMQVKKTPGCSSIELK 497
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 89/370 (24%), Positives = 140/370 (37%), Gaps = 108/370 (29%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--------------- 46
GK +HA V + + D++V LI YG +R +FD MP
Sbjct: 134 GKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYAR 193
Query: 47 ----------------RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVA---DKITL 87
RDV SWNT+++ Y E L LF+Q++ A + T+
Sbjct: 194 HGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTM 253
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ ACA L G VH Y + + ++ L+ MY KC +D AL++F++
Sbjct: 254 STILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPR 313
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
++++ S +I G MHG + +AL +F
Sbjct: 314 KKDLFSWTTVICGLA--------------------------MHG-----RTTDALRMFDM 342
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M D G+ PD+ +V VL+AC+ +G LV
Sbjct: 343 MQDNGICPDDVTLVGVLNACA------HGGLV---------------------------- 368
Query: 268 LEEALVTFYKTDCKDVVT-----WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
+E L FY + K +T + MI+ L G EA + M + PN +
Sbjct: 369 -DEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMP---MDPNTVIWG 424
Query: 323 SVLAACRHSG 332
+ L+AC+ G
Sbjct: 425 AFLSACKVHG 434
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 28/204 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLMSIYN 60
G +HA++ + ++ D Y+ LI Y + +A +F+K P +D+ SW T++
Sbjct: 269 GIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLA 328
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + L +F + GI D +TLV + +ACA H GL Y +
Sbjct: 329 MHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACA-----------HGGLVDEGLGYFYS 377
Query: 121 ME------------NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDME 165
ME ++ + + + EA + M N V ++ + +ME
Sbjct: 378 MEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNME 437
Query: 166 LVDLAREVFDEIVDKDIVLWRSMM 189
L +A E + D D R M+
Sbjct: 438 LGKIAAEELTRL-DPDDPWGRVML 460
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 160/466 (34%), Positives = 253/466 (54%), Gaps = 8/466 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG--RMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K HA V K+ L + +V + L++F R + A LF + + +NT++
Sbjct: 22 KQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALL 81
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + +F + GI D TL + A AR+ +H G+++H K+G
Sbjct: 82 LRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEF 141
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+LL+MY M A ++FDEM + VS ++I GY +M VD ARE+FD K
Sbjct: 142 VGNSLLVMYRSFDNMRSARQVFDEM-PELSAVSWTVMIYGYANMGDVDTARELFDMATVK 200
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D +W +M+ G V+ +E L +F+ M V PDE ++V++LSAC+ + L G +H
Sbjct: 201 DTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIH 260
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
R++ + + V T LIDMY+KCG L+ A F + +D V W MI G+A G G
Sbjct: 261 RYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGE 320
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+++F +ME+ GIKP+ TF++VLAAC +SG++ EG +++ RM V++++P EH+ C+
Sbjct: 321 GAIKLFMEMEKAGIKPDNITFIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCV 380
Query: 361 VDLLSRAGLLYQAEEFIKIMP----AEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+DLLSR G +AE I+ +P ++ ++++A LSAC + + + A + +L
Sbjct: 381 IDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLE 440
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
S AYVLLSN YA G + R MK K PG S I +
Sbjct: 441 RHS-GAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKV 485
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 140/351 (39%), Gaps = 72/351 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--------------- 45
+G+ +HA K + +VGNSL+ Y AR +FD+MP
Sbjct: 123 LGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYA 182
Query: 46 ----------------FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
+D G W ++S Y + E L +F+ + + D+ +V
Sbjct: 183 NMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVT 242
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA + L G +H Y ++GL L + L+ MYAKC +D A LF+EM R
Sbjct: 243 ILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRD 302
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N V W +M+ G E A++LF +M
Sbjct: 303 N--------------------------------VCWNAMISGMAMDGDGEGAIKLFMEME 330
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
G+ PD ++VL+ACS+ + G R+ +R + I + +ID+ S+ G
Sbjct: 331 KAGIKPDNITFIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRF 390
Query: 269 EEALVTFYK-----TDCKDVVTWTTMIEGLANYGLGNE---ALRVFYQMER 311
EEA + + ++ V W + +G + A +Q+ER
Sbjct: 391 EEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLER 441
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/455 (34%), Positives = 244/455 (53%), Gaps = 35/455 (7%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99
+F ++P D WNT + + D + L+ Q+ + D T + AC +L
Sbjct: 63 MFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFW 122
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL-------------------- 139
++ G VH ++G + + N LL+ +AKC ++ A
Sbjct: 123 VNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAG 182
Query: 140 -----------RLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
+LFDEM +R++VS N++I Y ++ AR +FDE KDIV W ++
Sbjct: 183 YAQRGDLSVARKLFDEM-PKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNAL 241
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ G V EALELF +M G PDE M+S+LSAC+ L +L+ G VH I++ N
Sbjct: 242 IGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNK 301
Query: 249 TQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
+ + AL+DMY+KCG++ +A+ F+ KDVV+W ++I GLA +G E+L +F
Sbjct: 302 GKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFR 361
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367
+M+ + P+E TFV VLAAC H+G + EG + F M Y+++PTI H C+VD+L RA
Sbjct: 362 EMKMTKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRA 421
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL-GNQSHEAYVLL 426
GLL +A FI M E I +++LL AC + + +L K+ ++++ G+QS + YVLL
Sbjct: 422 GLLKEAFNFIASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGD-YVLL 480
Query: 427 SNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
SN YA +G W R+ M + K G+S ++
Sbjct: 481 SNVYASQGEWDGAENVRKLMDDNGVTKNRGSSFVE 515
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 138/303 (45%), Gaps = 45/303 (14%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ N +I Y + AR LFD+ P +D+ SWN L+ Y + + E L LF ++
Sbjct: 203 DLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEMC 262
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCY---ATKVGLEYMLNMENALLLMYAKCK 133
G D++T++ L SACA L L G+ VH K L +L NAL+ MYAKC
Sbjct: 263 GVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLG--NALVDMYAKCG 320
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
+ +A+R VF I DKD+V W S++ G
Sbjct: 321 NIGKAVR--------------------------------VFWLIRDKDVVSWNSVISGLA 348
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDA 252
EE+L LF++M V PDE V VL+ACS N+ G R H +++N +
Sbjct: 349 FHGHAEESLGLFREMKMTKVCPDEVTFVGVLAACSHAGNVDEGNRYFH--LMKNKYKIEP 406
Query: 253 FVK--TALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
++ ++DM + G L+EA + K + + + W +++ +G A R Q
Sbjct: 407 TIRHCGCVVDMLGRAGLLKEAFNFIASMKIE-PNAIVWRSLLGACKVHGDVELAKRANEQ 465
Query: 309 MER 311
+ R
Sbjct: 466 LLR 468
>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 684
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 153/468 (32%), Positives = 256/468 (54%), Gaps = 7/468 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H + + D+ +GN+LI +G+ AR +FD M +DV SW ++ Y
Sbjct: 95 VAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYV 154
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + ++LF+++ GI A+ +T+ + ACA KL G+ VH + + +E +
Sbjct: 155 NCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKL--GREVHGFILRNEMEGNVY 212
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +AL+ MYA + +A +FD M R+IVS N+++ Y + + +F ++ +
Sbjct: 213 VSSALVNMYASSLGLKQARLVFDSM-YHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKE 271
Query: 181 DIVL----WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
I L W + + GC++ Q E AL + KM D G+ P+ +VS L C++L +L+ G
Sbjct: 272 GIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGG 331
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+ +H ++ ++ +D + TAL+ +Y+KCG LE + F KDVV W TMI + +
Sbjct: 332 KEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMH 391
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G G E+L +F +M G++PN TF+ VL+ C HS L EG +F M + + P +H
Sbjct: 392 GKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADH 451
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VD+LSRAG L +A +FI+ MP E ++ ALL AC Y +LG A+ + ++
Sbjct: 452 YSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNVELGTLAASQLFEIE 511
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ YVLLSN W E +E R+ M++ K PG S + +K+
Sbjct: 512 PDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKN 559
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 125/260 (48%), Gaps = 12/260 (4%)
Query: 168 DLAREV--FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS 225
DL R + FD+I + D+ W ++ G + P++A++++ ++ V PD+ V++SV
Sbjct: 26 DLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAK 85
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
AC++ +L + +H +Q +D + ALIDM+ KC + A F KDVV+
Sbjct: 86 ACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVS 145
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS---GLITEGCQLFR 342
WT+M N G+ + + +F +M GI+ N T S+L AC G G L
Sbjct: 146 WTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKLGREVHGFILRN 205
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
M G V LV++ + + L QA M D +S+ +L+A E+
Sbjct: 206 EMEGNVYVSSA------LVNMYASSLGLKQARLVFDSMYHRD-IVSWNVMLTAYFLNKEY 258
Query: 403 DLGKKVANNMMKLGNQSHEA 422
+ G + + M K G + ++A
Sbjct: 259 ERGLGLFHQMRKEGIKLNQA 278
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LI G L+ AL F K D+ TWT +I G +G +A+ ++ + + ++P+
Sbjct: 17 LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76
Query: 318 EATFVSVLAACRHSG 332
+ +SV AC SG
Sbjct: 77 KFVLLSVAKACAASG 91
>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
Length = 681
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 158/453 (34%), Positives = 246/453 (54%), Gaps = 2/453 (0%)
Query: 7 AH-VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
AH V T + D + ++LI Y DAR F + V WN+L+S Y ++
Sbjct: 226 AHCVLNTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEE 285
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
E +LF + +G+ D TL + SAC+ L +GK +H YA KVGL + +A
Sbjct: 286 IEAFLLFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASAF 345
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+ Y+KC +++A +LF E+ + I+ LN +I Y + ++ A+++F+ + K ++ W
Sbjct: 346 IDAYSKCGSLNDACKLFSELKTYDTIL-LNSMITVYSNSGKIEDAKQIFNTMPSKSLISW 404
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
SM+ G + P EAL+LF M + + + SV+SAC+S+S+L+ G +
Sbjct: 405 NSMIVGLSQNGCPVEALDLFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIFARATV 464
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
+ D + T+L+D Y KCG +E F D ++W +M+ G A G G EAL +
Sbjct: 465 VGLDSDEVISTSLVDFYCKCGFIEIGRKLFDTMMKSDEISWNSMLMGYATNGHGLEALTL 524
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F +M G++P E TF VL+AC H GL+ EG + F M Y + P IEH+ C+VDL +
Sbjct: 525 FNEMRHAGVRPTEITFTGVLSACDHCGLVKEGWRWFNIMQYDYHIDPGIEHYSCMVDLFA 584
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
RAG L +A IK MP E + ++L C+ + E DLG+KVA +++L ++ AYV
Sbjct: 585 RAGCLEEAMNLIKRMPFEADASMWSSVLRGCMAHGEKDLGEKVAQQIIELDPENSGAYVQ 644
Query: 426 LSNFYALEGHWTEVAEARRNMKELQTRKKPGNS 458
LS+ +A G W A R+ M+E Q +K PG S
Sbjct: 645 LSSIFATSGDWESSALVRKVMQERQVQKYPGYS 677
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 130/489 (26%), Positives = 203/489 (41%), Gaps = 100/489 (20%)
Query: 2 GKGLHAHVTKTAL-DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNT------ 54
GK LH K L S + + N L+ Y R TDA LFD+MP R+ SWNT
Sbjct: 24 GKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMIEGYM 83
Query: 55 -------------LMSIYND---------FSDSGEVLI---------------------- 70
+MS ND F+ +GE+ I
Sbjct: 84 KSGNKERSIRLFDMMSNKNDYSWNVVFSGFAKAGEMEIARRLFNEMPNRNGVVWNSMIHS 143
Query: 71 ------------LFKQLIFEGI---VADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
LFK+L + + D L + AC L ++ GK +H +
Sbjct: 144 YARNGSPREAVRLFKELNLDPLDKSCCDTFVLATVIGACTDLGEIQCGKQIHARILIDNM 203
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
E + ++L+ +Y KC ++D A + + M + SL+ LI GY + ++ AR F
Sbjct: 204 ELDSVLTSSLINLYGKCGDLDSAHCVLNTM-EEPDDFSLSALITGYANHGRMNDARRAFY 262
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
+ +V+W S++ G V + EA LF M +G+ D + ++LSACSSL N Q+
Sbjct: 263 RKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSACSSLCNSQH 322
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA-----------------LVTFYKT 278
G+ +H + + + D V +A ID YSKCGSL +A ++T Y
Sbjct: 323 GKQMHAYACKVGLICDNVVASAFIDAYSKCGSLNDACKLFSELKTYDTILLNSMITVYSN 382
Query: 279 D--------------CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
K +++W +MI GL+ G EAL +F M + ++ N SV
Sbjct: 383 SGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDLFCMMNKLDLRMNRFNLTSV 442
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
++AC + G Q+F R V + LVD + G + + M D
Sbjct: 443 ISACASISSLELGEQIFAR-ATVVGLDSDEVISTSLVDFYCKCGFIEIGRKLFDTMMKSD 501
Query: 385 KFISYKALL 393
+ IS+ ++L
Sbjct: 502 E-ISWNSML 509
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 143/297 (48%), Gaps = 69/297 (23%)
Query: 99 KLHYGKTVHCYATKVGL-EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNIL 157
+H GK +H K GL + L++ N LL MY +C M +A +LFDEM RN S N +
Sbjct: 20 SIHQGKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDAHKLFDEM-PHRNCFSWNTM 78
Query: 158 INGYI-------DMELVDL------------------------AREVFDEIVDKDIVLWR 186
I GY+ + L D+ AR +F+E+ +++ V+W
Sbjct: 79 IEGYMKSGNKERSIRLFDMMSNKNDYSWNVVFSGFAKAGEMEIARRLFNEMPNRNGVVWN 138
Query: 187 SMMHGCVKAKQPEEALELFKKM----IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
SM+H + P EA+ LFK++ +D+ D V+ +V+ AC+ L +Q G+ +H
Sbjct: 139 SMIHSYARNGSPREAVRLFKELNLDPLDKSCC-DTFVLATVIGACTDLGEIQCGKQIHAR 197
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
IL +N+ D+ + ++LI++Y KCG L+ A + D + + +I G AN+G N+A
Sbjct: 198 ILIDNMELDSVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDA 257
Query: 303 LRVFYQ-------------------------------MERKGIKPNEATFVSVLAAC 328
R FY+ M++KG+K + +T ++L+AC
Sbjct: 258 RRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSAC 314
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 23/193 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + A T LDSD + SL+ FY + R LFD M D SWN+++ Y
Sbjct: 454 LGEQIFARATVVGLDSDEVISTSLVDFYCKCGFIEIGRKLFDTMMKSDEISWNSMLMGYA 513
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF ++ G+ +IT + SAC HC K G +
Sbjct: 514 TNGHGLEALTLFNEMRHAGVRPTEITFTGVLSACD-----------HCGLVKEGWRWFNI 562
Query: 121 ME------------NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168
M+ + ++ ++A+ ++EA+ L M + + ++ G + D
Sbjct: 563 MQYDYHIDPGIEHYSCMVDLFARAGCLEEAMNLIKRMPFEADASMWSSVLRGCMAHGEKD 622
Query: 169 LAREVFDEIVDKD 181
L +V +I++ D
Sbjct: 623 LGEKVAQQIIELD 635
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/477 (31%), Positives = 251/477 (52%), Gaps = 18/477 (3%)
Query: 5 LHAHVTKTAL-----DSDIYVGNSLIHFYGRM-----------ALFTDARVLFDKMPFRD 48
+HAH T L S + + N L F + AL A +F+++P
Sbjct: 34 VHAHTITTGLLWGLHHSSLLLTNILTAFTALLPTTNASPTTPAALTGYALSVFNRIPNPS 93
Query: 49 VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHC 108
+NT++ + S L++F ++ + D T AC+ L L +T+H
Sbjct: 94 TFGYNTMIRAHTLLSSPLAALVIFVRMRRLSVPPDTHTFPFCLKACSLLPALSLAQTLHS 153
Query: 109 YATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168
A K G L + N L+ +Y+ K + A ++F+E S +++VS N LI G+I + D
Sbjct: 154 QAFKFGFGADLFVCNTLIHVYSVNKHLHHACQVFNET-SLKDVVSYNALIGGFIKVGDTD 212
Query: 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQ-PEEALELFKKMIDEGVTPDEEVMVSVLSAC 227
AR +FD++ +D V W +++ G ++ +A++LF +M+ V PD +VS LSAC
Sbjct: 213 RARRLFDKMPIRDAVSWGTLLAGYAQSGDLCMDAIQLFNRMLISTVRPDNIALVSALSAC 272
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+ L L+ G+ +H +I QN I +AF+ T L+D+Y+KCG +E A F + K++ TW
Sbjct: 273 AQLGELEQGKSIHVYIKQNRIPINAFLSTGLVDLYAKCGCIETAREIFESSPDKNLFTWN 332
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
++ GL +G G+ +L F +M GIKP+ +F+ +L C H+GL+ E F+ M V
Sbjct: 333 ALLVGLGMHGRGHLSLHYFSRMIEAGIKPDGVSFLGILVGCGHAGLVCEARNFFQEMEVV 392
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
YRV ++H+ C+ DLL RAGL+ +A E I+ MP + +L C + ++ +K
Sbjct: 393 YRVPRELKHYGCMADLLGRAGLIREAMEMIERMPMGGDVFVWGGVLGGCRIHGNVEIAEK 452
Query: 408 VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
A N+M L + Y ++++ YA G W +VA RR M Q +K PG S++ L +
Sbjct: 453 AAENVMALNPEDDGVYSIMADIYANAGRWEDVARIRRLMHSRQVKKNPGCSLVQLNN 509
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/416 (35%), Positives = 234/416 (56%), Gaps = 5/416 (1%)
Query: 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLH--YGKTVHC 108
SW + +++ E F + G+ + IT + L S C G +H
Sbjct: 38 SWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHG 97
Query: 109 YATKVGLEYMLNM-ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
YA K+GL+ M A++ MY+K +A +FD M +N V+ N +I+GY+ V
Sbjct: 98 YACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYM-EDKNSVTWNTMIDGYMRSGQV 156
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227
D A ++FD++ ++D++ W +M++G VK EEAL F++M GV PD +++ L+AC
Sbjct: 157 DNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNAC 216
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
++L L +G VHR++L + + V +LID+Y +CG +E A FY + + VV+W
Sbjct: 217 TNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWN 276
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
++I G A G +E+L F +M+ KG KP+ TF L AC H GL+ EG + F+ M
Sbjct: 277 SVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCD 336
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY-SEFDLGK 406
YR+ P IEH+ CLVDL SRAG L A + ++ MP + + +LL+AC + + L +
Sbjct: 337 YRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAE 396
Query: 407 KVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ ++ L +SH YV+LSN YA +G W ++ RR MK L +K+PG S I++
Sbjct: 397 RLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEI 452
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 131/322 (40%), Gaps = 73/322 (22%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSG---EVLIL 71
D + N++I Y R +A +FDKMP RD+ SW ++ N F G E L+
Sbjct: 137 DKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMI---NGFVKKGYQEEALLW 193
Query: 72 FKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK 131
F+++ G+ D + ++ +AC L L +G VH Y + + + N+L+ +Y +
Sbjct: 194 FREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCR 253
Query: 132 CKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHG 191
C ++ A ++F M +R +VS W S++ G
Sbjct: 254 CGCVEFARQVFYNM-EKRTVVS-------------------------------WNSVIVG 281
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQ 250
E+L F+KM ++G PD L+ACS + ++ G R I+
Sbjct: 282 FAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISP 341
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
L+D+YS+ G LE+AL +++ +
Sbjct: 342 RIEHYGCLVDLYSRAGRLEDAL---------------KLVQSMP---------------- 370
Query: 311 RKGIKPNEATFVSVLAACRHSG 332
+KPNE S+LAAC + G
Sbjct: 371 ---MKPNEVVIGSLLAACSNHG 389
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 9/162 (5%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H +V +++ V NSLI Y R AR +F M R V SWN+++ +
Sbjct: 225 GLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAA 284
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHC-YATKVGLE 116
++ E L+ F+++ +G D +T +AC+ + E L Y + + C Y +E
Sbjct: 285 NGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIE 344
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
+ L+ +Y++ +++AL+L M + N V + L+
Sbjct: 345 HY----GCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLL 382
>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
Length = 650
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 155/449 (34%), Positives = 238/449 (53%), Gaps = 38/449 (8%)
Query: 18 IYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS-IYNDFSDSGEVLILFKQLI 76
I+V NSL+ Y + L DA LFD+MP R+V +W T+++ + N E L +
Sbjct: 115 IFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMW 174
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+G+ + T + AC L +H KVGL+
Sbjct: 175 RDGVAPNAYTFSSVLGACGTPGVL---AALHASTVKVGLD-------------------- 211
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
++ + LI+ Y+ + +D R VFDE+V +D+V+W S++ G ++
Sbjct: 212 ------------SDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSG 259
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
A+ELF +M D G + ++ + SVL AC+ + L+ GR VH +L+ +D +
Sbjct: 260 DGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YERDLILHN 317
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
AL+DMY KCGSLE+A F++ +DV++W+TMI GLA G EALRVF M+ +G+ P
Sbjct: 318 ALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAP 377
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
N T V VL AC H+GL+ +G FR M ++ +QP EH C+VDLL RAG L +A EF
Sbjct: 378 NRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEF 437
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436
I+ M E + ++ LL AC + +L A ++KL A VLLSN YA W
Sbjct: 438 IRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARVLLSNTYADLRQW 497
Query: 437 TEVAEARRNMKELQTRKKPGNSIIDLKHY 465
T+ ++ + M++ +K+PG S I+L+ +
Sbjct: 498 TDAEKSWKAMRDRGMKKEPGRSWIELEKH 526
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 36/300 (12%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LHA K LDSD++V +SLI Y ++ R +FD+M RD+ WN++++ + D
Sbjct: 201 LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGD 260
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ LF ++ G A++ TL + AC + L G+ VH + K E L + NA
Sbjct: 261 GVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YERDLILHNA 318
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
LL MY KC +++A LF M R D++
Sbjct: 319 LLDMYCKCGSLEDAEALFHRMPQR--------------------------------DVIS 346
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ G + + EAL +F M EGV P+ MV VL ACS ++ G R +
Sbjct: 347 WSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMK 406
Query: 245 Q-NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEA 302
+ I + ++D+ + G L+EA+ + + D V W T++ + GN A
Sbjct: 407 KLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLA 466
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 120/251 (47%), Gaps = 8/251 (3%)
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK-QPEEALEL 204
G+ I N L++ Y L+D A +FD + ++++V W +++ A + EEAL
Sbjct: 110 GAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRF 169
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
M +GV P+ SVL AC + L +H ++ + D FV+++LID Y K
Sbjct: 170 LVAMWRDGVAPNAYTFSSVLGACGTPGVLA---ALHASTVKVGLDSDVFVRSSLIDAYMK 226
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
G L+ F + +D+V W ++I G A G G A+ +F +M+ G N+ T SV
Sbjct: 227 LGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSV 286
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
L AC ++ G Q+ V + + + L+D+ + G L AE MP D
Sbjct: 287 LRACTGMVMLEAGRQVHAH---VLKYERDLILHNALLDMYCKCGSLEDAEALFHRMPQRD 343
Query: 385 KFISYKALLSA 395
IS+ ++S
Sbjct: 344 -VISWSTMISG 353
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 73/163 (44%), Gaps = 25/163 (15%)
Query: 198 PEEALELFKKMIDEGVTP----------------DEEVMVSVLSACSSLSNLQYGRLVHR 241
P +L +F ++ EG P D + ++ C GRL+HR
Sbjct: 37 PHPSLAIFSRLCVEGPFPAALALLPDLAAAGLRADPVSLTRLVKLCVRHGTAGDGRLIHR 96
Query: 242 FI--------LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
+ FV +L+ MY+K G L++AL F + ++VVTWTT++ L
Sbjct: 97 HVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAAL 156
Query: 294 ANY-GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335
AN G EALR M R G+ PN TF SVL AC G++
Sbjct: 157 ANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACGTPGVLA 199
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HAHV K + D+ + N+L+ Y + DA LF +MP RDV SW+T++S
Sbjct: 299 GRQVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQ 356
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYMLN 120
S E L +F + EG+ ++IT+V + AC+ + G K+ G++
Sbjct: 357 NGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPERE 416
Query: 121 MENALLLMYAKCKEMDEALRLFDEM 145
N ++ + + ++DEA+ +M
Sbjct: 417 HHNCMVDLLGRAGKLDEAVEFIRDM 441
>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
Length = 620
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 159/474 (33%), Positives = 253/474 (53%), Gaps = 29/474 (6%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
++ +L+ Y R L +A VLF +MP R+V SWNT++ Y +G+ LF ++
Sbjct: 102 NVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMP 161
Query: 77 FEGIVADKITLVILF-SACARLEKLHYG----KTVHCYATKV-GLEYMLNMENALLLM-- 128
+ I L +L S + +G + V + T V G+ N++ A LL
Sbjct: 162 VRDAGSWNILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDS 221
Query: 129 ---------------YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
Y + +DEAL LF +M R+I S NI+I G+I + + AR++
Sbjct: 222 MPERNVVSWNAMISGYTRNHRLDEALDLFTKM-PHRDIASCNIMITGFIQNKDLKRARKL 280
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
FDE+ ++++V W +MM+G +K KQ E +L LF+ M+ G+ P++ + L ACS L+ L
Sbjct: 281 FDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATL 340
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
G+ VH+ I + D FV +AL+++Y+KCG + A F + KD+++W +I
Sbjct: 341 CEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAY 400
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A++G+G EA+ ++ +M+ G +PN+ T+V +L+AC HSGL+ EG ++F M +
Sbjct: 401 AHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVR 460
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFI---KIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
EH+ CL+DL SRAG L A+ I KI PA + ALL C + +G A
Sbjct: 461 DEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSV--WSALLGGCNAHGNESIGNLAAR 518
Query: 411 NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
N+++ + Y LLSN YA G W E AE R M +K+PG S I++ +
Sbjct: 519 NLIQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVAN 572
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 142/332 (42%), Gaps = 68/332 (20%)
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ YA+ + +A LFD +RRN+V+ L++GY LVD A +F + +++V
Sbjct: 76 ALVSAYARRGMLRDARSLFDRSDARRNVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVV 135
Query: 184 LWRSMMHGCVKAKQPEEALELFKKM--------------------IDE-----GVTPDEE 218
W +M+ A + +A LF +M +D+ G P+ +
Sbjct: 136 SWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAMLVRSGSVDKARELFGRMPERD 195
Query: 219 VM--VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
VM +++ + N+ RL+ + + N+ A+I Y++ L+EAL F
Sbjct: 196 VMAWTTMVDGVARSGNVDEARLLFDSMPERNVVS----WNAMISGYTRNHRLDEALDLFT 251
Query: 277 KTDCKD-------------------------------VVTWTTMIEGLANYGLGNEALRV 305
K +D VVTWTTM+ G +L +
Sbjct: 252 KMPHRDIASCNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGL 311
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDL 363
F M GI+PN+ TF+ L AC + EG Q+ + + + ++ FV L+++
Sbjct: 312 FRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQM---ICKTAFQVDTFVGSALMNV 368
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
++ G + A + + +D IS+ +++A
Sbjct: 369 YAKCGEVGLARKLFDLSREKD-LISWNGIIAA 399
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 108/271 (39%), Gaps = 67/271 (24%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + KTA D +VG++L++ Y + AR LFD +D+ SWN +++ Y
Sbjct: 343 GKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAH 402
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + L++++ G + +T V+L SAC+ H G
Sbjct: 403 HGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACS-----HSGL----------------- 440
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+DE L++F+ M + R+I + ID+
Sbjct: 441 -------------VDEGLKIFESMVNDRSIAVRDEHYTCLIDL----------------- 470
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE-EVMVSVLSACSSLSNLQYGRLVH 240
C +A + ++A L + + P V ++L C++ N G L
Sbjct: 471 ----------CSRAGRLDDAKRLIHYL---KIKPASGSVWSALLGGCNAHGNESIGNLAA 517
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
R ++Q +A T L ++Y+ G +EA
Sbjct: 518 RNLIQAE-PDNAGTYTLLSNIYASAGKWKEA 547
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 10/155 (6%)
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
++D+ + G + +A F T +DVV+WT ++ A G+ +A +F +R + N
Sbjct: 47 IVDL-AAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLF---DRSDARRN 102
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI 377
T+ ++L+ +GL+ E LF+RM Q + + +++ + AG A
Sbjct: 103 VVTWTALLSGYARAGLVDEAEVLFQRM-----PQRNVVSWNTMLEAYAVAGRAGDACALF 157
Query: 378 KIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
MP D S+ LL+ + D +++ M
Sbjct: 158 DRMPVRDAG-SWNILLAMLVRSGSVDKARELFGRM 191
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 165/494 (33%), Positives = 258/494 (52%), Gaps = 34/494 (6%)
Query: 3 KGLHAHVTKTALDSD-IYVGNSLIHFYGRMALFTD-ARVLFDKMPFRDVGSWNTLMSIYN 60
K +HA+V KT LD+D I G L+H + D AR LF P DV NTL+
Sbjct: 22 KQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLA 81
Query: 61 DFSDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ LI F ++ D + L A A L G +HC A GL+ L
Sbjct: 82 ESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHL 141
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSR------------------------------R 149
+ L+ MY++C + A ++F+EM R
Sbjct: 142 FVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFR 201
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N+ S N+++ GY ++LAR++F E+ KD V W +M+ G EA F+++
Sbjct: 202 NLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQ 261
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
G+ P+E + LSAC+ +++G+++H FI ++ V AL+D YSKCG++
Sbjct: 262 QVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVG 321
Query: 270 EALVTFYK-TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
A + F + + + +V+WT+MI GLA +G G EA+++F++ME GI+P+ F+S+L AC
Sbjct: 322 MARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYAC 381
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
H+GLI +G + F +M +Y ++P IEH+ C+VDL RAG L +A EFI MP I
Sbjct: 382 SHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAII 441
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
++ LL AC + L ++V + +L + +VLLSN YA+ G W +VA RR+M +
Sbjct: 442 WRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTD 501
Query: 449 LQTRKKPGNSIIDL 462
+ K PG S+I++
Sbjct: 502 QRMNKTPGWSMIEV 515
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/382 (21%), Positives = 150/382 (39%), Gaps = 97/382 (25%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDAR----------------------- 38
G LH LD+ ++VG +L+ Y A+
Sbjct: 125 GIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFR 184
Query: 39 --------VLFDKMPFRDVGSWNTLMSIYND----------------------------F 62
++F++MPFR++ SWN +++ Y F
Sbjct: 185 CGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGF 244
Query: 63 SDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ +G E F++L G+ ++++L SACA + +GK +H + K G +M+
Sbjct: 245 AHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMV 304
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ NALL Y+KC + A +F+ M +R+IVS
Sbjct: 305 SVNNALLDTYSKCGNVGMARLVFERMPEKRSIVS-------------------------- 338
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RL 238
W SM+ G EEA++LF +M + G+ PD +S+L ACS ++ G
Sbjct: 339 -----WTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEY 393
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL-VTFYKTDCKDVVTWTTMIEGLANYG 297
++ NI ++D+Y + G L++A + + W T++ + +G
Sbjct: 394 FYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHG 453
Query: 298 LGNEALRVFYQMERKGIKPNEA 319
A RV ++ + PN +
Sbjct: 454 NVKLAERVKERLSE--LDPNNS 473
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 162/461 (35%), Positives = 250/461 (54%), Gaps = 33/461 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HA+ K LDSD+ VGNSL+ Y + +FDKMP +DV SW T+++ +
Sbjct: 438 GMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQ 497
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L LF+++ EGI D + + + AC+ L+ + K +H Y + GL ++ +
Sbjct: 498 NGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLV-L 556
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+N ++ +Y +C +D A R+F EL++ KD
Sbjct: 557 QNGIVDVYGECGNVDYAARMF----------------------ELIEF----------KD 584
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W SM+ V EALELF M + GV PD +VS+LSA +SLS L+ G+ +H
Sbjct: 585 VVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHG 644
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F+++ + + + L+DMY++CG+LE++ F KD+V WT+MI +G G
Sbjct: 645 FLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRA 704
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ +F +ME + I P+ FV+VL AC HSGL+ EG + M Y+++P EH+VCLV
Sbjct: 705 AIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLV 764
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RA L +A +F+K M E + ALL AC +S +LG+ A ++++ ++
Sbjct: 765 DLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPG 824
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVL+SN YA E W +V E R MK +K PG S I++
Sbjct: 825 NYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEV 865
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 165/341 (48%), Gaps = 34/341 (9%)
Query: 2 GKGLHAH-VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +HAH +T AL + +++ L+ YG+ DA LFD MP + + +WN ++ Y
Sbjct: 133 GQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYV 192
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L L++++ GI D T + AC L+ G VH A K G ++
Sbjct: 193 TNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVF 252
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+++ MY KC ++ NG AR++FD + +K
Sbjct: 253 VANSIVGMYTKCNDL-----------------------NG---------ARQLFDRMPEK 280
Query: 181 -DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W SM+ Q EAL LF +M + P+ V+ L AC S ++ G +
Sbjct: 281 EDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFI 340
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +L+++ + FV ALI MY++ G + EA FY D D ++W +M+ G GL
Sbjct: 341 HATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLY 400
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
+EAL+ +++M G KP+ +S++AA SG G Q+
Sbjct: 401 HEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQI 441
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 8/233 (3%)
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS 225
LVD A ++FD + K I W +M+ V +P +LEL+++M G+ D +L
Sbjct: 166 LVD-AEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILK 224
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVV 284
AC L + + G VH ++ FV +++ MY+KC L A F + K DVV
Sbjct: 225 ACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVV 284
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
+W +MI ++ G EALR+F +M++ + PN TFV+ L AC S I +G +
Sbjct: 285 SWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIH--- 341
Query: 345 GGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
V + I FV L+ + +R G + +A M D IS+ ++LS
Sbjct: 342 ATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDT-ISWNSMLSG 393
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 16/187 (8%)
Query: 217 EEVMVSVLSACSSLSNLQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
+E SVL C S L G+ VH I N + F+ T L+ MY KCG L +A F
Sbjct: 114 DEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLF 173
Query: 276 YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335
K + TW MI G +L ++ +M GI + TF +L AC GL+
Sbjct: 174 DGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC---GLLK 230
Query: 336 EGCQLFRRMGGVYRVQPTIEHFV-------CLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
+ RR G E +V +V + ++ L A + MP ++ +S
Sbjct: 231 D-----RRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVS 285
Query: 389 YKALLSA 395
+ +++SA
Sbjct: 286 WNSMISA 292
>gi|302762633|ref|XP_002964738.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
gi|300166971|gb|EFJ33576.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
Length = 644
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 138/429 (32%), Positives = 238/429 (55%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + + + D+ V +L++ YG+ +A +FD+MP DV W+ ++S + +
Sbjct: 216 GKLVHDTLVEAGHEDDVVVQTALVNMYGKCGSVVEAVEVFDRMPRHDVILWSAVISAHVN 275
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
++ E L LF+++ EG + +TLV + SAC + L GK +H + G E L +
Sbjct: 276 CAEYEESLRLFRKMQLEGNRPNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLIV 335
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NA++ MY KC +++A +F + R + N LI+ Y AR++FD + ++D
Sbjct: 336 GNAIVSMYGKCGSLEDAWDVFHRVPRRNGVPIGNALISMYGRCGSFGKARDLFDSMAERD 395
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +MM + + ++++LF++M+ EG PD+ +++VL+ C+SL LQ G+ +
Sbjct: 396 AVTWNTMMSVSEQLEHGRDSIQLFRQMLQEGTPPDKVTILTVLNVCASLPALQEGKAICA 455
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ ++ + + A+++MY+KCGS +EA F +D V+W +I +Y G
Sbjct: 456 WLDHTPLSANQMIGNAILNMYAKCGSRDEARRIFSVMQGRDAVSWNALIGAYGSYSRGRY 515
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A ++F M+ +G P+ TF ++L+ C H GL+ E + FR M Y V+ H+ C+V
Sbjct: 516 AFQIFQAMQLEGSTPDAVTFTTILSVCSHGGLLGEAVKWFRWMREDYYVEAETGHYGCIV 575
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R G + +AEE + MPA I + LLSAC + E GK+ A +++L +
Sbjct: 576 DLLGRLGRVPEAEEVAEKMPAGTDPIVWTTLLSACQVHGETQRGKRAAERLVELDPEVTS 635
Query: 422 AYVLLSNFY 430
AYV+LS Y
Sbjct: 636 AYVVLSTIY 644
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 172/350 (49%), Gaps = 45/350 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM---PFRDVGSWNTLMSI 58
G+ +HA + +++ D VGN LI Y + DA +F ++ ++ +W L++
Sbjct: 14 GRQIHASIARSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLLETSVVNLVAWTALIAA 73
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y + + LF+Q+ EG D+ITLV +F AC E L GK +H Y +
Sbjct: 74 YARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDGKKIHAY---LSCNSD 130
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + ++L+ MY KC + EA +F M N V+ N L+ ++ + V
Sbjct: 131 VVLGSSLITMYGKCGSLSEACLMFQSM-EEWNTVAWNSLMGAFVQHDRV----------- 178
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
E A+EL+ +M+ G P ++VL+A SSL +L++G+L
Sbjct: 179 --------------------EAAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKL 218
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH +++ D V+TAL++MY KCGS+ EA+ F + DV+ W+ +I N
Sbjct: 219 VHDTLVEAGHEDDVVVQTALVNMYGKCGSVVEAVEVFDRMPRHDVILWSAVISAHVNCAE 278
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
E+LR+F +M+ +G +PN T VSVL+AC EG Q G++
Sbjct: 279 YEESLRLFRKMQLEGNRPNNVTLVSVLSAC-------EGPQALETGKGIH 321
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/433 (25%), Positives = 197/433 (45%), Gaps = 73/433 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA+++ +SD+ +G+SLI YG+ ++A ++F M + +WN+LM +
Sbjct: 118 GKKIHAYLS---CNSDVVLGSSLITMYGKCGSLSEACLMFQSMEEWNTVAWNSLMGAFVQ 174
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L+ +++ G + + T + + +A + LE L +GK VH + G E + +
Sbjct: 175 HDRVEAAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLVEAGHEDDVVV 234
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ AL+ MY KC + EA+ +FD M D
Sbjct: 235 QTALVNMYGKCGSVVEAVEVFDRMPRH--------------------------------D 262
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++LW +++ V + EE+L LF+KM EG P+ +VSVLSAC L+ G+ +H
Sbjct: 263 VILWSAVISAHVNCAEYEESLRLFRKMQLEGNRPNNVTLVSVLSACEGPQALETGKGIHE 322
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD-----------------C---- 280
+++ D V A++ MY KCGSLE+A F++ C
Sbjct: 323 CVVEAGYEGDLIVGNAIVSMYGKCGSLEDAWDVFHRVPRRNGVPIGNALISMYGRCGSFG 382
Query: 281 -----------KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+D VTW TM+ G +++++F QM ++G P++ T ++VL C
Sbjct: 383 KARDLFDSMAERDAVTWNTMMSVSEQLEHGRDSIQLFRQMLQEGTPPDKVTILTVLNVCA 442
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
+ EG + + + + ++++ ++ G +A +M D +
Sbjct: 443 SLPALQEGKAICAWLD---HTPLSANQMIGNAILNMYAKCGSRDEARRIFSVMQGRDA-V 498
Query: 388 SYKALLSACITYS 400
S+ AL+ A +YS
Sbjct: 499 SWNALIGAYGSYS 511
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 8/197 (4%)
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK---TD 279
+L CS +L GR +H I +++ QD V LI MY KCGSL +A FY+ T
Sbjct: 1 LLRQCSRSKDLARGRQIHASIARSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLLETS 60
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339
++V WT +I A G A+R+F QM+ +G P+ T V++ AC + + +G
Sbjct: 61 VVNLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDG-- 118
Query: 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
+++ + L+ + + G L +A + M E +++ +L+ A + +
Sbjct: 119 --KKIHAYLSCNSDVVLGSSLITMYGKCGSLSEACLMFQSM-EEWNTVAWNSLMGAFVQH 175
Query: 400 SEFDLGKKVANNMMKLG 416
+ ++ M++ G
Sbjct: 176 DRVEAAMELYWEMLQCG 192
>gi|223948849|gb|ACN28508.1| unknown [Zea mays]
gi|413937254|gb|AFW71805.1| hypothetical protein ZEAMMB73_337002 [Zea mays]
Length = 608
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 163/508 (32%), Positives = 265/508 (52%), Gaps = 47/508 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYG------------------------------- 29
+G+ +HAH+ KTAL S + N L+ Y
Sbjct: 50 LGRAVHAHLVKTALTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLAALL 109
Query: 30 -RMALFTDARVLFDKMPF--RDVGSWNTLMSIYNDFSDSGEVLILFKQL-----IFEGIV 81
R DA LFD MP R++ S+NTLMS E L + +L + G+
Sbjct: 110 RRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLA 169
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
D+ T+V + +ACA + + +H G+E+ + M NA+L Y+K + +++A L
Sbjct: 170 MDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDARHL 229
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
FD++ R N V+ +I+GY ++ + A +VFD + DKD + W +++ G + + + A
Sbjct: 230 FDQVSIRDN-VTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTA 288
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ---DAFVKTAL 258
LELF++M+ +GV+P V+VS L AC+ L + G+ +H FIL+ NI + F+ AL
Sbjct: 289 LELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHNAL 348
Query: 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
+DMYSKCG + A+ F +D ++W +M+ G ++ GLG ++L +F +M G++P
Sbjct: 349 VDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTH 408
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
TF++VL AC HSGL++ G + M + V+P EH+ +D L R L +A EFIK
Sbjct: 409 VTFLAVLTACSHSGLVSNGRLVLESMED-HGVEPRAEHYAAFIDALGRNHQLEEATEFIK 467
Query: 379 IMPA---EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
+P+ S+ ALL AC + +L ++VA + +L + YV++SN YA G
Sbjct: 468 DLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQ 527
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDLK 463
W + R MKE +K S I+++
Sbjct: 528 WDDARRVRGLMKEKGLKKDQAYSWIEVR 555
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 151/352 (42%), Gaps = 52/352 (14%)
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
LH G+ VH + K L + N L+ +Y+ A++ F ++ +N S N L+
Sbjct: 48 LHLGRAVHAHLVKTALTSHTLLSNRLVALYSSLPSPAAAVKAFYDL-PHKNAHSYNTLLA 106
Query: 160 GYIDME--LVDLAREVFDEIV--DKDIVLWRSMMHGCVKAKQPEEALELFKKM-----ID 210
+ L D R +FD + +++V + ++M + EAL + ++ +
Sbjct: 107 ALLRRPDTLPDAFR-LFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLG 165
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ D +VSV +AC+ + + R +H ++ + + + A+++ YSK +E+
Sbjct: 166 PGLAMDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVED 225
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANY-------------------------------GLG 299
A F + +D VTWT+MI G G
Sbjct: 226 ARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEE 285
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG----CQLFRRMGGVYRVQPTIE 355
+ AL +F QM KG+ P VS L AC GL+T G C + RR G I
Sbjct: 286 DTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIH 345
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
+ LVD+ S+ G + A MP D FIS+ ++++ +S LGK+
Sbjct: 346 N--ALVDMYSKCGDMMAAMAVFDWMPERD-FISWNSMVTG---FSHNGLGKQ 391
>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
Length = 825
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 255/467 (54%), Gaps = 38/467 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G+ LHA++ K++ + + N++I Y R + +F M RDV +WNT++S +
Sbjct: 340 LGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFV 399
Query: 60 -NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N D G +L+ Q +G + D +TL L S + L GK H Y + G+++
Sbjct: 400 QNGLDDEGLMLVFEMQK--QGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE 457
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
M+ L+ MYAK + A +LF++ +
Sbjct: 458 -GMDGYLIDMYAKSGLITTAQQLFEK------------------------------NSXY 486
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D+D W +M+ G + EE +F+KMI++ V P+ + S+L AC+ + + G+
Sbjct: 487 DRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQ 546
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H F ++ + Q+ FV TAL+DMYSK G++ A F +T K+ VT+TTMI +G+
Sbjct: 547 IHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGM 606
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G AL +F+ M GIKP+ TFV++L+AC ++GL+ EG ++F+ M Y++QP+ EH+
Sbjct: 607 GERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYC 666
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAE-DKFISYKALLSACITYSEFDLGKKVANNMMKL-- 415
C+ D+L R G + +A EF+K + E + F + +LL AC + EF+LGK VAN ++++
Sbjct: 667 CVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLLEMEK 726
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
G+ +VLLSN YA EG+W V R+ M++ K+ G S +++
Sbjct: 727 GSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEV 773
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/410 (26%), Positives = 189/410 (46%), Gaps = 68/410 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFY----------GRMALFTDA---RVLFDKMPFR 47
+GK LH HV ++ S V NSL++ Y G F + R +FD M R
Sbjct: 122 LGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKR 181
Query: 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH 107
+V +WNT++S Y E +F+ ++ GI ++ V +F A R+ ++
Sbjct: 182 NVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYDNANVLY 241
Query: 108 CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
K+G +Y+ D+ +VS I + Y ++ V
Sbjct: 242 GLVVKLGSDYV-----------------DDFF-----------VVSSAIFM--YAELGCV 271
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSA 226
D ARE+FD ++++ +W +M+ G V+ P EA++LF ++++ E D+ +S L+A
Sbjct: 272 DFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTA 331
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
S L L GR +H +IL+++ + A+I MYS+CGS+ + F +DVVTW
Sbjct: 332 ISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTW 391
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR-----------HSGLIT 335
TM+ GL +E L + ++M+++G + T ++L+ H+ LI
Sbjct: 392 NTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIR 451
Query: 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
G Q F M G L+D+ +++GL+ A++ + D+
Sbjct: 452 HGIQ-FEGMDGY------------LIDMYAKSGLITTAQQLFEKNSXYDR 488
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 136/311 (43%), Gaps = 35/311 (11%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL-IFEGIVADKITLVILFSACARLE 98
LFD +P WNT++ + + + L+ + ++ D T ACA+
Sbjct: 59 LFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQAR 118
Query: 99 KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
L GK +HC+ + + N+LL MY+ C + + L
Sbjct: 119 SLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTC------------------LTEVPYLG 160
Query: 159 NGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE 218
Y D DL R VFD + +++V W +M+ VK ++ EA ++F+ M+ G+ P
Sbjct: 161 TAY-DFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPV 219
Query: 219 VMVSVLSACSSL-----SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
V+V A + +N+ YG +V L ++ D FV ++ I MY++ G ++ A
Sbjct: 220 SFVNVFPAVWRMNDYDNANVLYGLVVK---LGSDYVDDFFVVSSAIFMYAELGCVDFARE 276
Query: 274 TFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQ-MERKGIKPNEATFVSVLAACR 329
F DC ++ W TMI G EA+ +F Q ME + ++ TF+S L A
Sbjct: 277 IF---DCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAIS 333
Query: 330 HSGLITEGCQL 340
+ G QL
Sbjct: 334 QLQWLDLGRQL 344
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP--DEEVMVSVLSAC 227
A +FD I VLW +++ G + P +AL + +M +P D S L AC
Sbjct: 56 ALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARM-RASPSPKFDSYTFSSTLKAC 114
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK-TDC------ 280
+ +L+ G+ +H +L+++ V +L++MYS C + L T Y +C
Sbjct: 115 AQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRV 174
Query: 281 ------KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
++VV W TMI EA ++F M R GI+P +FV+V A
Sbjct: 175 FDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227
>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/462 (31%), Positives = 245/462 (53%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH K L +I V N+++ YG+ +A ++F++M RD SWN +++ +
Sbjct: 359 GIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQ 418
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + L LF ++ + D T + ACA + L+YG +H K G+ +
Sbjct: 419 NEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFV 478
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+AL+ MY KC + EA ++ + +K
Sbjct: 479 GSALVDMYGKCGMLMEA--------------------------------EKIHARLEEKT 506
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W S++ G KQ E A F +M++ G+ PD +VL C++++ ++ G+ +H
Sbjct: 507 TVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHA 566
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
IL+ + D ++ + L+DMYSKCG+++++ + F K +D VTW+ MI A +GLG +
Sbjct: 567 QILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEK 626
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ +F +M+ +KPN F+SVL AC H G + +G F++M Y + P +EH+ C+V
Sbjct: 627 AINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMV 686
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R+G + +A + I+ MP E + ++ LLS C ++ +K N++++L Q
Sbjct: 687 DLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSS 746
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AYVLL+N YA+ G W EVA+ R MK + +K+PG S I+++
Sbjct: 747 AYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVR 788
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/412 (27%), Positives = 194/412 (47%), Gaps = 41/412 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH H K+ D +G + + Y + DA +F+ +P S+N ++ Y
Sbjct: 257 LGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYA 316
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L +F+ L + D+I+L +AC+ +++ G +H A K GL + +
Sbjct: 317 RQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNIC 376
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N +L MY KC + EA +F+EM RR+ VS N +I A E +EIV
Sbjct: 377 VANTILDMYGKCGALMEACLIFEEM-ERRDAVSWNAII----------AAHEQNEEIV-- 423
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ L LF M+ + PD+ SV+ AC+ L YG +H
Sbjct: 424 -------------------KTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIH 464
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I+++ + D FV +AL+DMY KCG L EA + + K V+W ++I G ++
Sbjct: 465 GRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSE 524
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC- 359
A R F QM GI P+ T+ +VL C + I G Q+ + + ++Q + ++
Sbjct: 525 NAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQ---ILKLQLHSDVYIAS 581
Query: 360 -LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
LVD+ S+ G + + + P D ++++ A++ A Y+ LG+K N
Sbjct: 582 TLVDMYSKCGNMQDSRLMFEKAPKRD-YVTWSAMICA---YAYHGLGEKAIN 629
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 185/429 (43%), Gaps = 73/429 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + T IYV N L+ FY + + A +FD+MP RDV SWNTL+ Y
Sbjct: 25 GKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRDVISWNTLIFGYAG 84
Query: 62 FSDSGEVLILFKQLIFEGIVA-------------------------------DKITLVIL 90
+ G LF + +V+ D T ++
Sbjct: 85 IGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVI 144
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
AC+ +E G VHC A ++G E + +AL+ MY+KCK++D+A R+F EM R
Sbjct: 145 LKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPER-- 202
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
++V W +++ G V+ + E L+LFK M+
Sbjct: 203 ------------------------------NLVCWSAVIAGYVQNDRFIEGLKLFKDMLK 232
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ + SV +C+ LS + G +H L+++ D+ + TA +DMY+KC + +
Sbjct: 233 VGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFD 292
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F ++ +I G A G +AL +F ++R + +E + L AC
Sbjct: 293 AWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSV 352
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRAGLLYQAEEFIKIMPAEDKF 386
EG QL V+ + +C ++D+ + G L +A + M D
Sbjct: 353 IKRHLEGIQLHG-----LAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDA- 406
Query: 387 ISYKALLSA 395
+S+ A+++A
Sbjct: 407 VSWNAIIAA 415
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 156/326 (47%), Gaps = 10/326 (3%)
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
K+T + C+ L+ L+ GK VH G + + N LL Y K +M+ A ++FD
Sbjct: 6 KLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFD 65
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
M +R+++S N LI GY + + A+ +FD + ++D+V W S++ + +++E
Sbjct: 66 RM-PQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIE 124
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
+F +M + D +L ACS + + G VH +Q D +AL+DMYS
Sbjct: 125 IFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYS 184
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KC L++A F + +++V W+ +I G E L++F M + G+ +++T+ S
Sbjct: 185 KCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYAS 244
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMP 381
V +C G QL G + + + +D+ ++ ++ A + +P
Sbjct: 245 VFRSCAGLSAFKLGTQLH---GHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLP 301
Query: 382 AEDKFISYKALLSACITYSEFDLGKK 407
+ SY A++ + Y+ D G K
Sbjct: 302 NPPR-QSYNAII---VGYARQDQGLK 323
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/419 (24%), Positives = 192/419 (45%), Gaps = 40/419 (9%)
Query: 2 GKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
G GL H + ++D+ G++L+ Y + DA +F +MP R++ W+ +++ Y
Sbjct: 155 GLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGY 214
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L LFK ++ G+ + T +F +CA L G +H +A K Y
Sbjct: 215 VQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDS 274
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ A L MYAKC+ M +A ++F+ + + S N +I GY
Sbjct: 275 IIGTATLDMYAKCERMFDAWKVFNTLPNPPR-QSYNAIIVGY------------------ 315
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+ Q +AL++F+ + + DE + L+ACS + G +
Sbjct: 316 -------------ARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQL 362
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ + + V ++DMY KCG+L EA + F + + +D V+W +I
Sbjct: 363 HGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEI 422
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV- 358
+ L +F M R ++P++ T+ SV+ AC + G ++ R + + ++ FV
Sbjct: 423 VKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGR---IIKSGMGLDWFVG 479
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
LVD+ + G+L +AE+ I E +S+ +++S + + + ++ + M+++G
Sbjct: 480 SALVDMYGKCGMLMEAEK-IHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMG 537
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 104/224 (46%), Gaps = 29/224 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA + K L SD+Y+ ++L+ Y + D+R++F+K P RD +W+ ++ Y
Sbjct: 560 LGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYA 619
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLE 116
+ + LF+++ + + + + ACA + + LHY + + + GL+
Sbjct: 620 YHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKM---LSHYGLD 676
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + ++ + + +++EAL+L + M + V L++ V++A + F+
Sbjct: 677 PQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNS 736
Query: 177 IVDKD----------------IVLW------RSMMHGCVKAKQP 198
++ D + +W RS+M C K+P
Sbjct: 737 LLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEP 780
>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
Length = 700
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/463 (32%), Positives = 245/463 (52%), Gaps = 34/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H +V K+ D + ++ L+ Y + DA +FD++ D+ SW ++ Y
Sbjct: 257 GKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQ 316
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF ++ ++ + +T + SACA+ L+ G++VHC K+G E
Sbjct: 317 RGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDA-TF 375
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENAL+ MYAKC ++ AR VF+ + DKD
Sbjct: 376 ENALVDMYAKC--------------------------------HMIGDARYVFETVFDKD 403
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W S++ G + EALELF +M + V PD +VSVLSAC+S+ + G +H
Sbjct: 404 VIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHG 463
Query: 242 FILQNNI-TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ ++ + + +V TAL++ Y+KCG E A V F + K+ +TW+ MI G G +
Sbjct: 464 YAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCS 523
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+L +F M ++ ++PNE F ++L+AC HSG++ EG + F M VY P+++H+ C+
Sbjct: 524 RSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACM 583
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL+RAG L +A +FI+ +P + A L C +S FDLG+ M++L
Sbjct: 584 VDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKA 643
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVL+SN YA EG W++ + MK+ K PG S++D++
Sbjct: 644 CYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDIE 686
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/468 (25%), Positives = 208/468 (44%), Gaps = 70/468 (14%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +HA + L D+ L+ YG AR++FD++ D+ SW ++ Y
Sbjct: 56 RKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYF-L 114
Query: 63 SDSGEVLILFKQLIFEGIVA--DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+DS ++ F + D + I+ AC+ L + G+ +HC KVG
Sbjct: 115 NDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPDSFV 174
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ L+ MYAKC+E++++ R+FDE I+D+
Sbjct: 175 L-TGLVDMYAKCREVEDSRRVFDE--------------------------------ILDR 201
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++V W SM+ G V+ +E L LF +M + V ++ + S+++AC+ L L G+ VH
Sbjct: 202 NVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVH 261
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++++ ++F+ T L+D+Y KCG + +A F + D+V+WT MI G A G
Sbjct: 262 GYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPR 321
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG----------------------- 337
EAL++F K + PN T SVL+AC +G + G
Sbjct: 322 EALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVD 381
Query: 338 ----CQLFRRMGGVYRV--QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF---IS 388
C + V+ + + ++ ++ G Y+A E M ++ + I+
Sbjct: 382 MYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAIT 441
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV--LLSNFYALEG 434
++LSAC + + +G + +K G S YV L NFYA G
Sbjct: 442 LVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCG 489
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 161/340 (47%), Gaps = 36/340 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH + K D +V L+ Y + D+R +FD++ R+V W +++ Y
Sbjct: 157 GRKLHCQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQ 215
Query: 62 FSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L+LF ++ EG+V ++ TL L +AC +L LH GK VH Y K G +
Sbjct: 216 NDCLKEGLVLFNRM-REGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSF 274
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ LL +Y KC ++ +A +FDE+ +
Sbjct: 275 LVTPLLDLYFKCGDIRDAFSVFDELST--------------------------------I 302
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ G + P EAL+LF + + P+ SVLSAC+ +L GR VH
Sbjct: 303 DLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVH 362
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ ++DA + AL+DMY+KC + +A F KDV+ W ++I G G
Sbjct: 363 CLGIKLG-SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAY 421
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
EAL +F QM + P+ T VSVL+AC G G L
Sbjct: 422 EALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSL 461
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 148/332 (44%), Gaps = 44/332 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +H K D N+L+ Y + + DAR +F+ + +DV +WN+++S Y
Sbjct: 357 MGRSVHCLGIKLG-SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYT 415
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYML 119
+ E L LF Q+ + + D ITLV + SACA + G ++H YA K G L +
Sbjct: 416 QNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSV 475
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ ALL YAKC + + A +FDEMG +
Sbjct: 476 YVGTALLNFYAKCGDAESARVIFDEMG--------------------------------E 503
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RL 238
K+ + W +M+ G +LELF M+ E + P+E + ++LSACS L G R
Sbjct: 504 KNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRY 563
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGL---A 294
+ N ++D+ ++ G LEEAL K + DV + G +
Sbjct: 564 FNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHS 623
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+ LG A+R ++ P++A + +++
Sbjct: 624 RFDLGEVAVRRMLELH-----PDKACYYVLMS 650
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/462 (33%), Positives = 243/462 (52%), Gaps = 43/462 (9%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+G HAHV K D +VGN+LI Y + +DA+ +FD+M RDV SWNT M+
Sbjct: 221 RGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQ 280
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ +F ++ + V+
Sbjct: 281 GEVDAARSMFDEMPEKDTVS---------------------------------------W 301
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N +L YAK E ++A LF M R N+VS + +++ Y +++AR +FD++ K++
Sbjct: 302 NTMLDGYAKAGEAEKAFELFQRMPGR-NVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNL 360
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W M+ C + EEA LF +M+D + D +VS+L+AC+ +L G+ +HR
Sbjct: 361 VTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRH 420
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDVVTWTTMIEGLANYGLGN 300
+ Q +++ V AL+DM+ KCG + A F T+ KD+V+W +I G A +G G
Sbjct: 421 VRQRKLSRSTLVCNALMDMFCKCGCVNRADYIF-DTEIVEKDLVSWNIIIGGFAMHGPGE 479
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL +F QM+++G P+ T ++VL+AC H GL+ EG + F M Y ++P IEH+ C+
Sbjct: 480 KALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCM 539
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL R GL+ +A + IK MP E + + +LLSAC + + + N + L S
Sbjct: 540 VDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSSA 599
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y +LSN YA G W+++A+AR MK ++K G+S I+L
Sbjct: 600 GNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIEL 641
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD-KMPFRDVGSWNTLMSIY 59
+GK +H HV + L V N+L+ + + A +FD ++ +D+ SWN ++ +
Sbjct: 413 LGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGF 472
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
+ L LF Q+ +G D +TL+ + SAC + + G+
Sbjct: 473 AMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGR 517
>gi|357165628|ref|XP_003580444.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Brachypodium distachyon]
Length = 779
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 159/472 (33%), Positives = 259/472 (54%), Gaps = 44/472 (9%)
Query: 1 MGKGLHAHVTKTALDS-DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+G+ LH ++ K + + +GN+L+ Y R A LFD++P +D+ SWNT+++ +
Sbjct: 329 LGQQLHGYLMKGMRSTLPVILGNALVVMYSRCGNVHAAFDLFDQLPEKDIVSWNTMVTAF 388
Query: 60 --NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
NDF G L+L Q+ G VAD +TL + SA + L GK H Y + G+E
Sbjct: 389 VQNDFDFEG--LLLVYQMHKSGFVADAVTLTAVLSAASNTGDLQIGKQSHGYLIRHGIEG 446
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+E+ L+ MY+K +D A R+FD G+ R+ V+ N +I GY
Sbjct: 447 E-GLESYLINMYSKSGHIDMAQRVFDGYGNDRDEVTWNAMIAGY---------------- 489
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS-NLQYG 236
++ QPE+A+ F+ M++ GV P + SVL AC + +Q G
Sbjct: 490 ---------------TQSGQPEQAVLAFRAMVEAGVEPTSVTLASVLPACEPVGEGVQAG 534
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+ +H F L++++ + FV TAL+DMYSKCG + A F + K VT+TTMI GL +
Sbjct: 535 KQIHSFALRHSLDTNIFVGTALVDMYSKCGEITAAENVFDRMTEKSTVTYTTMISGLGQH 594
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G G+ AL +FY M+ G+KP+ TF++ ++AC +SGL+ EG L+R M + + T +H
Sbjct: 595 GFGDRALFLFYSMQDNGLKPDAVTFLAAISACNYSGLVDEGLSLYRSM-ETFGLSATPQH 653
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS-YKALLSACITYSEFDLGKKVANNMMKL 415
C+VDLL++AG + +A +F++ + + FI+ + +LL++C + +L V + ++ +
Sbjct: 654 HCCIVDLLAKAGRVEEAYDFVESLGEDGNFIAIWGSLLASCKAQGKQELTAFVTDKLLNI 713
Query: 416 GNQ---SHEAY-VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Q +H Y VLLS +A EG+W+ RR M+ RK G+S I ++
Sbjct: 714 EKQYGHAHAGYNVLLSQLFAAEGNWSSADSLRREMRVRGLRKDVGSSWIKVQ 765
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 161/346 (46%), Gaps = 44/346 (12%)
Query: 5 LHAHVTKTA--LDSDIYVGNSLIHFYGRMALFTDA-----RVLFDKMPFRDVGSWNTLMS 57
+HAH+ + A L + NSL++ Y A + R LFD P R+V SWNTL+
Sbjct: 122 VHAHLLRRARSLPDTAVLRNSLLNLYASCARYRHGGVDVVRRLFDATPKRNVVSWNTLVG 181
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y E L +F +++ +GI ++ V +F A A + + ++ K G+EY
Sbjct: 182 WYVKTGRPYEALEMFMRMLEDGIRPTPVSFVNVFPAAAS-DDPSWPFFLYGMLIKHGVEY 240
Query: 118 M--LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ L + ++ + M+++ ++ A +FD +++NI N +I GY
Sbjct: 241 VSDLFVVSSAIAMFSEIGDVQSARMVFDH-AAKKNIEVWNTMITGY-------------- 285
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELF-KKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
V+ Q EA++LF + M +GV D +S ++A S + +
Sbjct: 286 -----------------VQNGQFSEAMDLFIQIMGSKGVPLDVVTFLSAITAASQSQDGK 328
Query: 235 YGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
G+ +H ++++ T + AL+ MYS+CG++ A F + KD+V+W TM+
Sbjct: 329 LGQQLHGYLMKGMRSTLPVILGNALVVMYSRCGNVHAAFDLFDQLPEKDIVSWNTMVTAF 388
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339
E L + YQM + G + T +VL+A ++G + G Q
Sbjct: 389 VQNDFDFEGLLLVYQMHKSGFVADAVTLTAVLSAASNTGDLQIGKQ 434
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 143/292 (48%), Gaps = 19/292 (6%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
VD+ R +FD +++V W +++ VK +P EALE+F +M+++G+ P V+V A
Sbjct: 158 VDVVRRLFDATPKRNVVSWNTLVGWYVKTGRPYEALEMFMRMLEDGIRPTPVSFVNVFPA 217
Query: 227 CSSLSNLQYGRLVHRFILQNNI--TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
+S + + ++ ++++ + D FV ++ I M+S+ G ++ A + F K++
Sbjct: 218 AAS-DDPSWPFFLYGMLIKHGVEYVSDLFVVSSAIAMFSEIGDVQSARMVFDHAAKKNIE 276
Query: 285 TWTTMIEGLANYGLGNEALRVFYQ-MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
W TMI G G +EA+ +F Q M KG+ + TF+S + A S G QL
Sbjct: 277 VWNTMITGYVQNGQFSEAMDLFIQIMGSKGVPLDVVTFLSAITAASQSQDGKLGQQLHGY 336
Query: 344 -MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
M G+ P I LV + SR G ++ A + +P +D +S+ +++A + ++F
Sbjct: 337 LMKGMRSTLPVILG-NALVVMYSRCGNVHAAFDLFDQLPEKD-IVSWNTMVTAFVQ-NDF 393
Query: 403 DLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK 454
D + L Q H+ S F A T V A N +LQ K+
Sbjct: 394 DF------EGLLLVYQMHK-----SGFVADAVTLTAVLSAASNTGDLQIGKQ 434
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 193 VKAKQPEEALELFKKMIDEGVTP---DEEVMVSVLSACSSLSNLQYGRLVHRFILQN--N 247
V P+ AL L+ + P D L+AC+ L+ GR VH +L+ +
Sbjct: 73 VAGALPDHALGLYGVLNHAARPPPRSDHYTYSCALTACARSRRLRLGRSVHAHLLRRARS 132
Query: 248 ITQDAFVKTALIDMYSKC-----GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+ A ++ +L+++Y+ C G ++ F T ++VV+W T++ G EA
Sbjct: 133 LPDTAVLRNSLLNLYASCARYRHGGVDVVRRLFDATPKRNVVSWNTLVGWYVKTGRPYEA 192
Query: 303 LRVFYQMERKGIKPNEATFVSVLAAC 328
L +F +M GI+P +FV+V A
Sbjct: 193 LEMFMRMLEDGIRPTPVSFVNVFPAA 218
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 247/461 (53%), Gaps = 38/461 (8%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
A LFD++P DV N ++ + + L+ ++ G+ D+ T + AC++
Sbjct: 31 AHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSK 90
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM--------------------- 135
LE G H + G ++NAL+L +A C ++
Sbjct: 91 LEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSM 150
Query: 136 ----------DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
DEA+RLFDEM ++ V+ N++I G + + +D ARE+FD +KD+V W
Sbjct: 151 TSGYAKRGKIDEAMRLFDEM-PYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTW 209
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+M+ G V P+EAL +FK+M D G PD ++S+LSAC+ L +L+ G+ +H +IL+
Sbjct: 210 NAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILE 269
Query: 246 N-NITQDAFVKT----ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ +V T ALIDMY+KCGS++ A+ F +D+ TW T+I GLA +
Sbjct: 270 TASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHH-AE 328
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
++ +F +M+R + PNE TF+ V+ AC HSG + EG + F M +Y ++P I+H+ C+
Sbjct: 329 GSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCM 388
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L RAG L +A F++ M E I ++ LL AC Y +LGK ++ +
Sbjct: 389 VDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDES 448
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YVLLSN YA G W V + R+ + + +K G S+I+
Sbjct: 449 GDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE 489
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 159/422 (37%), Gaps = 105/422 (24%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHF-------------------------------YGR 30
G H V + + YV N+LI F Y +
Sbjct: 97 GFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAK 156
Query: 31 MALFTDARVLFDKMPF-------------------------------RDVGSWNTLMSIY 59
+A LFD+MP+ +DV +WN ++S Y
Sbjct: 157 RGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGY 216
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCY-----ATKVG 114
+ E L +FK++ G D +T++ L SACA L L GK +H Y +
Sbjct: 217 VNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSS 276
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF 174
+ + NAL+ MYAKC +D A+ EVF
Sbjct: 277 IYVGTPIWNALIDMYAKCGSIDRAI--------------------------------EVF 304
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
+ D+D+ W +++ G + E ++E+F++M V P+E + V+ ACS +
Sbjct: 305 RGVKDRDLSTWNTLIVG-LALHHAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVD 363
Query: 235 YGRLVHRFILQ-NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEG 292
GR + NI + ++DM + G LEEA + + + + W T++
Sbjct: 364 EGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGA 423
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV-Q 351
Y GN L + + ++ +E+ +L+ S +G Q R+M RV +
Sbjct: 424 CKIY--GNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKK 481
Query: 352 PT 353
PT
Sbjct: 482 PT 483
>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
Length = 577
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 163/465 (35%), Positives = 254/465 (54%), Gaps = 13/465 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + K+ SD+++ N LI Y + AR +FD+MP RD S+N+++ Y
Sbjct: 112 GMQVHGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVK 171
Query: 62 ---FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+GE +F+ + +K L+ S + G V E
Sbjct: 172 CGLVESAGE--------LFDLMPREKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKD 223
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L N+++ Y K +++A LFD M RR++V+ I+I+GY + LV A+ +FD++
Sbjct: 224 LISWNSMIGGYVKHGRIEDAKGLFDVM-PRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMP 282
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGR 237
+D+V + SMM G V+ + EALE+F M E ++PDE +V VLSA + L L
Sbjct: 283 HRDVVAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAI 342
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H +I++ + ALIDMYSKCGS++ A+ F + K + W MI GLA +G
Sbjct: 343 DMHLYIVEKRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHG 402
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
LG A + Q+ER+ IKP+ TFV VL AC HSGL+ EG F M ++++P ++H+
Sbjct: 403 LGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 462
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VD+L+R+G + A+ I+ MP E + ++ L+AC + EF+ G+ VA +++
Sbjct: 463 GCMVDILARSGSIELAKNLIEEMPIEPNDVIWRTFLNACSHHKEFETGELVAKHLILQAG 522
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ +YVLLSN YA G W +V R MKE + K PG S I+L
Sbjct: 523 YNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKKIEKLPGCSWIEL 567
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 40/297 (13%)
Query: 166 LVDLAREVFDEIVD--------KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217
L + AR VF E KD LW +++ P +AL LF M++ GV D+
Sbjct: 34 LAEFARCVFHEYHSRSVSPGEIKDPFLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDK 93
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
M VL ACS L + G VH F++++ D F++ LI +Y KCG L A F +
Sbjct: 94 FSMSLVLKACSRLGFAKEGMQVHGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDR 153
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA--ACRHSGLIT 335
+D V++ +MI+G GL A +F M R+ K N T+ S++ A R G +
Sbjct: 154 MPQRDSVSYNSMIDGYVKCGLVESAGELFDLMPRE--KRNLITWNSMIGGYAQRADG-VN 210
Query: 336 EGCQLFRRMG------------------------GVYRVQPT--IEHFVCLVDLLSRAGL 369
+LF M G++ V P + + ++D + GL
Sbjct: 211 VASKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGL 270
Query: 370 LYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLL 426
++QA+ MP D ++Y +++S + +V N+M K + S + L+
Sbjct: 271 VHQAKTLFDQMPHRD-VVAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLV 326
>gi|293336045|ref|NP_001168520.1| uncharacterized protein LOC100382300 [Zea mays]
gi|195615774|gb|ACG29717.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
gi|223946951|gb|ACN27559.1| unknown [Zea mays]
Length = 616
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 163/508 (32%), Positives = 265/508 (52%), Gaps = 47/508 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYG------------------------------- 29
+G+ +HAH+ KTAL S + N L+ Y
Sbjct: 58 LGRAVHAHLVKTALTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLAALL 117
Query: 30 -RMALFTDARVLFDKMPF--RDVGSWNTLMSIYNDFSDSGEVLILFKQL-----IFEGIV 81
R DA LFD MP R++ S+NTLMS E L + +L + G+
Sbjct: 118 RRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLA 177
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
D+ T+V + +ACA + + +H G+E+ + M NA+L Y+K + +++A L
Sbjct: 178 MDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDARHL 237
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
FD++ R N V+ +I+GY ++ + A +VFD + DKD + W +++ G + + + A
Sbjct: 238 FDQVSIRDN-VTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTA 296
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ---DAFVKTAL 258
LELF++M+ +GV+P V+VS L AC+ L + G+ +H FIL+ NI + F+ AL
Sbjct: 297 LELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHNAL 356
Query: 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
+DMYSKCG + A+ F +D ++W +M+ G ++ GLG ++L +F +M G++P
Sbjct: 357 VDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTH 416
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
TF++VL AC HSGL++ G + M + V+P EH+ +D L R L +A EFIK
Sbjct: 417 VTFLAVLTACSHSGLVSNGRLVLESMED-HGVEPRAEHYAAFIDALGRNHQLEEATEFIK 475
Query: 379 IMPA---EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
+P+ S+ ALL AC + +L ++VA + +L + YV++SN YA G
Sbjct: 476 DLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQ 535
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDLK 463
W + R MKE +K S I+++
Sbjct: 536 WDDARRVRGLMKEKGLKKDQAYSWIEVR 563
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 151/352 (42%), Gaps = 52/352 (14%)
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
LH G+ VH + K L + N L+ +Y+ A++ F ++ +N S N L+
Sbjct: 56 LHLGRAVHAHLVKTALTSHTLLSNRLVALYSSLPSPAAAVKAFYDL-PHKNAHSYNTLLA 114
Query: 160 GYIDME--LVDLAREVFDEIV--DKDIVLWRSMMHGCVKAKQPEEALELFKKM-----ID 210
+ L D R +FD + +++V + ++M + EAL + ++ +
Sbjct: 115 ALLRRPDTLPDAFR-LFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLG 173
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ D +VSV +AC+ + + R +H ++ + + + A+++ YSK +E+
Sbjct: 174 PGLAMDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVED 233
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANY-------------------------------GLG 299
A F + +D VTWT+MI G G
Sbjct: 234 ARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEE 293
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG----CQLFRRMGGVYRVQPTIE 355
+ AL +F QM KG+ P VS L AC GL+T G C + RR G I
Sbjct: 294 DTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIH 353
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
+ LVD+ S+ G + A MP D FIS+ ++++ +S LGK+
Sbjct: 354 N--ALVDMYSKCGDMMAAMAVFDWMPERD-FISWNSMVTG---FSHNGLGKQ 399
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/414 (35%), Positives = 239/414 (57%), Gaps = 5/414 (1%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN ++ +++ + + + ++ Q++ G++ D +T L + +RL G ++HC
Sbjct: 822 WNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVV 881
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K GLE+ L + N L+ MY ++ A +LFDEM +N+V+ N +++ Y V AR
Sbjct: 882 KSGLEWDLFICNTLIHMYGSFRDQASARKLFDEM-PHKNLVTWNSILDAYAKSGDVVSAR 940
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV-MVSVLSACSSL 230
VFDE+ ++D+V W SM+ G VK + +ALE+F +M+ G + EV MVSV+ AC+ L
Sbjct: 941 LVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHL 1000
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK--DVVTWTT 288
L G+ VHR+IL ++ ++T+LIDMY+KCGS+ +A FY+ K D + W
Sbjct: 1001 GALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNA 1060
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
+I GLA++G E+L++F++M I P+E TF+ +LAAC H GL+ E F+ +
Sbjct: 1061 IIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKES- 1119
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
+P EH+ C+VD+LSRAGL+ A +FI MP + ALL+ CI + +L + V
Sbjct: 1120 GAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAETV 1179
Query: 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+++L + YV L+N YA+ + R M++ +K G+SI+DL
Sbjct: 1180 GKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDL 1233
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 165/378 (43%), Gaps = 59/378 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH V K+ L+ D+++ N+LIH YG AR LFD+MP +++ +WN+++ Y
Sbjct: 872 LGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYA 931
Query: 61 DFSDSGEVLILFKQL--------------------------IFEGIV------ADKITLV 88
D ++F ++ IF+ ++ A+++T+V
Sbjct: 932 KSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMV 991
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ ACA L L+ GKTVH Y V L + ++ +L+ MYAKC + +A +F +
Sbjct: 992 SVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVK 1051
Query: 149 R-NIVSLNILINGYIDMELVDLAREVFDEI----VDKDIVLWRSMMHGCVKAKQPEEALE 203
+ + N +I G + + ++F ++ +D D + + ++ C +EA
Sbjct: 1052 ETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWH 1111
Query: 204 LFKKMIDEGVTPDEE---VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
FK + + G P E MV VLS + + H FI + I + AL++
Sbjct: 1112 FFKSLKESGAEPKSEHYACMVDVLSRAGLVKD------AHDFISEMPIKPTGSMLGALLN 1165
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIE----GLANYGLGNEALRVFYQ----MERK 312
G+LE A +T K ++ + GLAN N+ R ME+K
Sbjct: 1166 GCINHGNLELA-----ETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKK 1220
Query: 313 GIKPNEATFVSVLAACRH 330
G+K + L RH
Sbjct: 1221 GVKKIAGHSILDLDGTRH 1238
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 33/239 (13%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
VD A + ++ D W ++ G ++ PE+++ ++ +M+ G+ PD ++ +
Sbjct: 804 VDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKS 863
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
S LSN + G +H ++++ + D F+ LI MY A F + K++VTW
Sbjct: 864 SSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTW 923
Query: 287 -------------------------------TTMIEGLANYGLGNEALRVFYQMERKG-I 314
++MI+G G N+AL +F QM R G
Sbjct: 924 NSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSS 983
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
K NE T VSV+ AC H G + G + R + V+ + T+ L+D+ ++ G + A
Sbjct: 984 KANEVTMVSVICACAHLGALNRGKTVHRYILDVH-LPLTVILQTSLIDMYAKCGSIGDA 1041
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 8/203 (3%)
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDK----DIVLWRSMMHGCVKAKQPEEALELF 205
++V+ I+G I E VD E+F +I D++ + ++ KA + EA LF
Sbjct: 578 HMVASTAAIDGLIKNEGVDRGLELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILF 637
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+M+ +G+ P S++ + G + ++ D T+LI
Sbjct: 638 NEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCAS 697
Query: 266 GSLEEALVTFYKTDCKDV----VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
G EA+ + + KD +T+ +I+GL G EAL F +ME K ++P+ A +
Sbjct: 698 GRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVY 757
Query: 322 VSVLAACRHSGLITEGCQLFRRM 344
+S++++ S I G +FR M
Sbjct: 758 LSLVSSFLSSENINAGFGIFREM 780
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 43/235 (18%)
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIV----LWRSMMHGCVKAKQPEEALELFKKM 208
SL+I+IN + VD+A + +IV ++ ++ +++ G K + EE+L+L +M
Sbjct: 441 SLSIVINCLVKANKVDMAVTLLHDIVQNGLIPGPMMYNNIIEGMCKEGRSEESLKLLGEM 500
Query: 209 IDEGVTPDEEVMVSV----------LSACSSLSNLQY--------------------GRL 238
D GV P + + + + A L +++ GR
Sbjct: 501 KDAGVEPSQFTLNCIYGCLAERCDFVGALDLLKKMRFYGFEPWIKHTTFLVKKLCENGRA 560
Query: 239 VHRFILQNNITQDAFV-----KTALIDMYSKCGSLEEALVTFY----KTDCKDVVTWTTM 289
V +++ + F+ TA ID K ++ L F C DV+ + +
Sbjct: 561 VDACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELFRDICANGHCPDVIAYHVL 620
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
I+ L EA +F +M KG+KP AT+ S++ G I G RM
Sbjct: 621 IKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRM 675
>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 861
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/454 (32%), Positives = 253/454 (55%), Gaps = 14/454 (3%)
Query: 11 KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLI 70
K++L D+ V N+ I YG+ +A +FD+M RD SWN +++ + E L
Sbjct: 368 KSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLF 427
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
LF ++ I D+ T + AC L YG +H K G+ ++ +L+ MY+
Sbjct: 428 LFVSMLRSRIEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYS 486
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
KC ++EA ++ R N+ +G ++ EL + + E+ V W S++
Sbjct: 487 KCGMIEEAEKIHSRFFQRTNV-------SGTME-ELEKMHNKRLQEMC----VSWNSIIS 534
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
G V +Q E+A LF +M++ G+TPD+ +VL C++L++ G+ +H +++ +
Sbjct: 535 GYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQS 594
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
D ++ + L+DMYSKCG L ++ + F K+ +D VTW MI G A++G G EA+++F +M
Sbjct: 595 DVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMI 654
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370
+ IKPN TF+S+L AC H GLI +G + F M Y + P + H+ +VD+L ++G +
Sbjct: 655 LENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKV 714
Query: 371 YQAEEFIKIMPAEDKFISYKALLSAC-ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429
+A E I+ MP E + ++ LL C I + ++ ++ +++L Q AY LLSN
Sbjct: 715 KRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNV 774
Query: 430 YALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YA G W +V++ RRNM+ + +K+PG S ++LK
Sbjct: 775 YADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELK 808
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/430 (25%), Positives = 191/430 (44%), Gaps = 73/430 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+GK HAH+ + +V N L+ Y F A ++FD+MP RDV SWN +++ Y
Sbjct: 24 LGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSWNKMINGYA 83
Query: 60 ---------------------------NDFSDSGEVLI---LFKQLIFEGIVADKITLVI 89
+ + +GE L +F + G D T I
Sbjct: 84 KSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAI 143
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ C+ LE G +H +VG + + +ALL MYAK K E+LR
Sbjct: 144 ILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLR--------- 194
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
VF I +K+ V W +++ GCV+ AL+ FK+M
Sbjct: 195 -----------------------VFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 231
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+ + SVL +C++LS L+ G +H L+++ D V+TA +DMY+KC +++
Sbjct: 232 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 291
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+A + F K++ + ++ MI G + G +AL +F+++ G+ +E + V AC
Sbjct: 292 DAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 351
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCL----VDLLSRAGLLYQAEEFIKIMPAEDK 385
++EG Q++ ++ ++ VC+ +D+ + L +A M D
Sbjct: 352 LVKGLSEGLQIYD-----LAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDA 406
Query: 386 FISYKALLSA 395
+S+ A+++A
Sbjct: 407 -VSWNAIIAA 415
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 166/385 (43%), Gaps = 54/385 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H V + D+D+ ++L+ Y + F ++ +F +P ++ SW+ +++
Sbjct: 156 LGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCV 215
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L FK++ + + +CA L +L G +H +A K
Sbjct: 216 QNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGI 275
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ A L MYAKC M +A LFD+ N S N +I GY E
Sbjct: 276 VRTATLDMYAKCDNMQDAQILFDK-SENLNRQSYNAMITGYSQEE--------------- 319
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
HG +AL LF +++ G+ DE + V AC+ + L G ++
Sbjct: 320 ---------HGF-------KALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIY 363
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++++++ D V A IDMY KC +L EA F + +D V+W +I G G
Sbjct: 364 DLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGY 423
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACR----------HSGLITEGCQLFRRMGGVYRV 350
E L +F M R I+P+E TF SVL AC HS ++ G +G
Sbjct: 424 ETLFLFVSMLRSRIEPDEFTFGSVLKACTGGSLGYGMEIHSSIVKSGMASNSSVG----- 478
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEE 375
L+D+ S+ G++ +AE+
Sbjct: 479 -------CSLIDMYSKCGMIEEAEK 496
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 141/312 (45%), Gaps = 56/312 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVL----------------FDKMP 45
G +H+ + K+ + S+ VG SLI Y + + +A + +KM
Sbjct: 459 GMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMH 518
Query: 46 FRDVG----SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLH 101
+ + SWN+++S Y S + +LF +++ GI DK T + CA L
Sbjct: 519 NKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAG 578
Query: 102 YGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY 161
GK +H K L+ + + + L+ MY+KC ++ ++ RL E RR+ V+ N +I GY
Sbjct: 579 LGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDS-RLMFEKSLRRDFVTWNAMICGY 637
Query: 162 IDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMV 221
HG + EEA++LF++MI E + P+ +
Sbjct: 638 AH--------------------------HG-----KGEEAIQLFERMILENIKPNHVTFI 666
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK--TALIDMYSKCGSLEEALVTFYKTD 279
S+L AC+ + + G L + ++++ + D + + ++D+ K G ++ AL +
Sbjct: 667 SILRACAHMGLIDKG-LEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMP 725
Query: 280 CK-DVVTWTTMI 290
+ D V W T++
Sbjct: 726 FEADDVIWRTLL 737
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA V K L SD+Y+ ++L+ Y + D+R++F+K RD +WN ++ Y
Sbjct: 579 LGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYA 638
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
E + LF+++I E I + +T + + ACA + + G + + GL+ L
Sbjct: 639 HHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQL 698
Query: 120 NMENALLLMYAKCKEMDEALRLFDEM 145
+ ++ + K ++ AL L EM
Sbjct: 699 PHYSNMVDILGKSGKVKRALELIREM 724
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 40/237 (16%)
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C+ L+ G+ H ++ + FV L+ +Y+ A + F + +DVV+W
Sbjct: 16 CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75
Query: 287 TTMIEG----------------------------LANYGLGNEALR---VFYQMERKGIK 315
MI G L+ Y E L+ VF M R G +
Sbjct: 76 NKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV--QPTIEHFVCLVDLLSRAGLLYQA 373
+ TF +L C + G Q+ G V RV + L+D+ ++ ++
Sbjct: 136 FDGRTFAIILKVCSCLEDTSLGMQIH---GVVVRVGCDTDVVAASALLDMYAKGKRFVES 192
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG---NQSHEAYVLLS 427
+ +P E +S+ A+++ C+ + L K M K+ +QS A VL S
Sbjct: 193 LRVFQGIP-EKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRS 248
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 153/463 (33%), Positives = 245/463 (52%), Gaps = 38/463 (8%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE------GIVADKITLVIL 90
AR++FD++P D +NTL+ + + ++ ++ G+ DK T +
Sbjct: 61 ARLVFDRIPHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFV 120
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD------- 143
ACA + G VH + K G E + NAL+ M+A C ++ A LFD
Sbjct: 121 LRACAAMGASETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDA 180
Query: 144 --------------EMGSRR---------NIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++G+ R ++VS N++I Y + + ARE+FD D+
Sbjct: 181 VAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDR 240
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ G V+ ++A+ELF++M G PD M+S+LSAC+ ++ GR +H
Sbjct: 241 DVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLH 300
Query: 241 RFILQ--NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
RF+ + I + ALIDMY+KCGS+ AL F+ K+V TW ++I GLA +G
Sbjct: 301 RFLSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGH 360
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EA+ VF +M + +KP+E TFV+VL AC H G++ +G + F M Y ++P ++H+
Sbjct: 361 VTEAIDVFQKMLQGNVKPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYG 420
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VD+LSRAGLL +A EFI M E + ++ LL AC + E +L + ++K +
Sbjct: 421 CMVDMLSRAGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGELELAEHANQELLKARSD 480
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+ +VLLSN YA G W R+ M + K+ G +++D
Sbjct: 481 ASGDFVLLSNIYASVGEWLGSENMRKLMDDSGVNKEAGCAVVD 523
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 130/285 (45%), Gaps = 50/285 (17%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ N +I Y ++ AR LFD P RDV SWN ++S Y + + LF+Q+
Sbjct: 210 DLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQ 269
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYA----TKVGLEYMLNMENALLLMYAKC 132
G D +T++ L SACA + G+ +H + +++G +L NAL+ MYAKC
Sbjct: 270 AMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLG--NALIDMYAKC 327
Query: 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC 192
M AL EVF + DK++ W S++ G
Sbjct: 328 GSMTSAL--------------------------------EVFWLMQDKNVSTWNSIIGGL 355
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQNN 247
EA+++F+KM+ V PDE V+VL ACS + G + R++++ N
Sbjct: 356 ALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPN 415
Query: 248 ITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMI 290
+ ++DM S+ G L+EA + K + V+ W T++
Sbjct: 416 VKH----YGCMVDMLSRAGLLKEAFEFIGTMKIEPNPVI-WRTLL 455
>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic [Vitis vinifera]
Length = 825
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/467 (32%), Positives = 256/467 (54%), Gaps = 38/467 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G+ LHA++ K++ + + N++I Y R + +F M RDV +WNT++S +
Sbjct: 340 LGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFV 399
Query: 60 -NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N D G +L+ Q +G + D +TL L S + L GK H Y + G+++
Sbjct: 400 QNGLDDEGLMLVFAMQK--QGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE 457
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
M++ L+ MYAK + A +LF++ +
Sbjct: 458 -GMDSYLIDMYAKSGLITTAQQLFEK------------------------------NSDY 486
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D+D W +M+ G + EE +F+KMI++ V P+ + S+L AC+ + + G+
Sbjct: 487 DRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQ 546
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H F ++ + ++ FV TAL+DMYSK G++ A F +T K+ VT+TTMI +G+
Sbjct: 547 IHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGM 606
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G AL +F+ M GIKP+ TFV++L+AC ++GL+ EG ++F+ M Y++QP+ EH+
Sbjct: 607 GERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYC 666
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAE-DKFISYKALLSACITYSEFDLGKKVANNMMKL-- 415
C+ D+L R G + +A EF+K + E + F + +LL AC + EF+LGK VAN ++++
Sbjct: 667 CVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEK 726
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
G+ +VLLSN YA EG+W V R+ M++ K+ G S +++
Sbjct: 727 GSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEV 773
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 105/403 (26%), Positives = 186/403 (46%), Gaps = 68/403 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFY----------GRMALFTDA---RVLFDKMPFR 47
+GK LH HV ++ S V NSL++ Y G F + R +FD M R
Sbjct: 122 LGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKR 181
Query: 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVH 107
+V +WNT++S Y E +F+ ++ GI ++ V +F A R+ ++
Sbjct: 182 NVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNANVLY 241
Query: 108 CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
K+G +++ D+ +VS I + Y ++ V
Sbjct: 242 GLVVKLGSDFV-----------------DDFF-----------VVSSAIFM--YAELGCV 271
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSA 226
D ARE+FD ++++ +W +M+ G V+ P EA++LF ++++ E D+ +S L+A
Sbjct: 272 DFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTA 331
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
S L L+ GR +H +IL+++ + A+I MYS+CGS+ + F +DVVTW
Sbjct: 332 ISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTW 391
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR-----------HSGLIT 335
TM+ GL +E L + + M+++G + T ++L+ H+ LI
Sbjct: 392 NTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIR 451
Query: 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
G Q F M L+D+ +++GL+ A++ +
Sbjct: 452 HGIQ-FEGMDSY------------LIDMYAKSGLITTAQQLFE 481
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 136/311 (43%), Gaps = 35/311 (11%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL-IFEGIVADKITLVILFSACARLE 98
LFD +P WNT++ + + + L+ + ++ D T ACA+
Sbjct: 59 LFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQAR 118
Query: 99 KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
L GK +HC+ + + N+LL MY+ C + + L
Sbjct: 119 SLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTC------------------LTEVPYLG 160
Query: 159 NGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE 218
Y D DL R VFD + +++V W +M+ VK ++ EA ++F+ M+ G+ P
Sbjct: 161 TAY-DFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPV 219
Query: 219 VMVSVLSACSSLS-----NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
V+V A +S N+ YG +V L ++ D FV ++ I MY++ G ++ A
Sbjct: 220 SFVNVFPAVWRMSDYDNANVLYGLVVK---LGSDFVDDFFVVSSAIFMYAELGCVDFARE 276
Query: 274 TFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQ-MERKGIKPNEATFVSVLAACR 329
F DC ++ W TMI G EA+ +F Q ME + ++ TF+S L A
Sbjct: 277 IF---DCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAIS 333
Query: 330 HSGLITEGCQL 340
+ G QL
Sbjct: 334 QLQWLELGRQL 344
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP--DEEVMVSVLSAC 227
A +FD I VLW +++ G + P +AL + +M +P D S L AC
Sbjct: 56 ALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARM-RASPSPKFDSYTFSSTLKAC 114
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK-TDC------ 280
+ +L+ G+ +H +L+++ V +L++MYS C + L T Y +C
Sbjct: 115 AQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRV 174
Query: 281 ------KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
++VV W TMI EA ++F M R GI+P +FV+V A
Sbjct: 175 FDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227
>gi|414589997|tpg|DAA40568.1| TPA: hypothetical protein ZEAMMB73_314346 [Zea mays]
Length = 627
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 160/499 (32%), Positives = 261/499 (52%), Gaps = 39/499 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMA---------------------------LF 34
G LHA + + L + + VGN+L+ Y + A +
Sbjct: 93 GAQLHARLIRAGLRALLPVGNTLVDMYAKCARADDAARAFGEMRERNALSWCSLLHAYVV 152
Query: 35 TD----ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+D A+ LFD+MP R+ +WNTL+ Y+ ++ + L+LF ++ EG+ D TL IL
Sbjct: 153 SDHLMLAQELFDQMPNRNNVAWNTLLMGYSRSGNANQCLLLFNKMRAEGMACDGATLCIL 212
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
AC L G +H A + G M + N+L+ +Y+K +D+A+R+F+ M R
Sbjct: 213 ADACTELAHPSAGSAIHKVAVQSGWSAMAEVSNSLISLYSKFSLLDDAVRIFESM-EVRT 271
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI- 209
IVS N LI+ Y+ + V+ A +F + + +++ W +M+ G + +EAL LF M+
Sbjct: 272 IVSWNSLIDSYMKLGCVEKATSLFRRVPETNVISWTAMIGGLARNGCADEALALFIVMLA 331
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
E + PD+ SVL AC++ ++L GR+VH ++ +V +L+DMY+KCG +E
Sbjct: 332 HEHIHPDDFTFGSVLHACATAASLASGRMVHCRAFRSGFAAYLYVANSLMDMYAKCGDVE 391
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
F KD+V+W TM+ G A G NEAL V+ M+ + P+E TF +L AC
Sbjct: 392 GGTNVFGAIVNKDLVSWNTMLFGFAINGWANEALVVYDSMKSHEVCPDEVTFAGLLTACN 451
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI----MPAEDK 385
HSGL+ G F M V+ +QP EH C++D+ +R+G + +A E + + + A +
Sbjct: 452 HSGLLEHGESFFESMVSVHGIQPKPEHLSCILDMYARSGNITKAMEMLDLYSETIRAHNS 511
Query: 386 FISYKALLSAC-ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444
I +ALLSAC + + F + +K +M+ + YV+LSN + G W + + R
Sbjct: 512 DIR-EALLSACSLEHLNFRVARKAMEDMVATKSAGDVGYVMLSNLFCAAGQWNQAEQVRI 570
Query: 445 NMKELQTRKKPGNSIIDLK 463
M E +K PG S I+++
Sbjct: 571 AMAEHGIKKTPGCSWIEVQ 589
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/369 (29%), Positives = 170/369 (46%), Gaps = 41/369 (11%)
Query: 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL 75
+ + S I GR AR +FD MP RD +WN +++ Y + L LF +
Sbjct: 10 AGLVAATSRIASLGRAGDAASARAMFDAMPRRDAVAWNAMLTAYVRAGQPRDALTLFSR- 68
Query: 76 IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135
D +L SA A L G +H + GL +L + N L+ MYAKC
Sbjct: 69 ---APAPDAFSLTAALSAAAALRSPVAGAQLHARLIRAGLRALLPVGNTLVDMYAKCARA 125
Query: 136 DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195
D+A R F EM RN +S L++ Y+ + + LA+E+FD++ +++ V W +++ G ++
Sbjct: 126 DDAARAFGEM-RERNALSWCSLLHAYVVSDHLMLAQELFDQMPNRNNVAWNTLLMGYSRS 184
Query: 196 KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK 255
+ L LF KM EG+ D + + AC+ L++ G +H+ +Q+ + A V
Sbjct: 185 GNANQCLLLFNKMRAEGMACDGATLCILADACTELAHPSAGSAIHKVAVQSGWSAMAEVS 244
Query: 256 TALIDMYS-------------------------------KCGSLEEALVTFYKTDCKDVV 284
+LI +YS K G +E+A F + +V+
Sbjct: 245 NSLISLYSKFSLLDDAVRIFESMEVRTIVSWNSLIDSYMKLGCVEKATSLFRRVPETNVI 304
Query: 285 TWTTMIEGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEG----CQ 339
+WT MI GLA G +EAL +F M + I P++ TF SVL AC + + G C+
Sbjct: 305 SWTAMIGGLARNGCADEALALFIVMLAHEHIHPDDFTFGSVLHACATAASLASGRMVHCR 364
Query: 340 LFRRMGGVY 348
FR Y
Sbjct: 365 AFRSGFAAY 373
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/462 (33%), Positives = 243/462 (52%), Gaps = 43/462 (9%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+G HAHV K D +VGN+LI Y + +DA+ +FD+M RDV SWNT M+
Sbjct: 149 RGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQ 208
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ +F ++ + V+
Sbjct: 209 GEVDAARSMFDEMPEKDTVS---------------------------------------W 229
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N +L YAK E ++A LF M R N+VS + +++ Y +++AR +FD++ K++
Sbjct: 230 NTMLDGYAKAGEAEKAFELFQRMPGR-NVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNL 288
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W M+ C + EEA LF +M+D + D +VS+L+AC+ +L G+ +HR
Sbjct: 289 VTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRH 348
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDVVTWTTMIEGLANYGLGN 300
+ Q +++ V AL+DM+ KCG + A F T+ KD+V+W +I G A +G G
Sbjct: 349 VRQRKLSRSTLVCNALMDMFCKCGCVNRADYIF-DTEIVEKDLVSWNIIIGGFAMHGPGE 407
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL +F QM+++G P+ T ++VL+AC H GL+ EG + F M Y ++P IEH+ C+
Sbjct: 408 KALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCM 467
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL R GL+ +A + IK MP E + + +LLSAC + + + N + L S
Sbjct: 468 VDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSSA 527
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y +LSN YA G W+++A+AR MK ++K G+S I+L
Sbjct: 528 GNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIEL 569
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD-KMPFRDVGSWNTLMSIY 59
+GK +H HV + L V N+L+ + + A +FD ++ +D+ SWN ++ +
Sbjct: 341 LGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGF 400
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
+ L LF Q+ +G D +TL+ + SAC + + G+
Sbjct: 401 AMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGR 445
>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
Length = 597
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 163/462 (35%), Positives = 257/462 (55%), Gaps = 7/462 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + KT L SD+++ N LI Y + +R +FD+MP RD S+N+++ Y
Sbjct: 124 GMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVK 183
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
LF + E + + I+ L S A+ G + E L
Sbjct: 184 CGLIESARELFDLMPKE--MKNLISWNCLISGYAQTSD---GVNIASKLFSEMPEKDLIS 238
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+++ Y K +++A LFD M RR++++ +I+GY + + A+ +FD+I +D
Sbjct: 239 WNSMIDGYVKHGRIEDAKDLFDVM-PRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRD 297
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V + SMM G V+ K EALELF KM E ++PDE +V VLSA + L L +H
Sbjct: 298 VVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMH 357
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I++ + ALIDMYSKCGS++ A++ F + K++ W +I GLA +GLG
Sbjct: 358 FYIVKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGG 417
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A + Q+ER IKP++ TF+ VL AC HSGL+ EG F M ++++P ++H+ C+
Sbjct: 418 PAFDMLLQIERLSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 477
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+LSR+G + A+ I+ MP E + ++ L+AC + EF++G+ VA +++ +
Sbjct: 478 VDILSRSGSIELAKILIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLILQAGYNP 537
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+YVLLSN YA G W +V R MKE + +K PG S I+L
Sbjct: 538 SSYVLLSNMYASCGMWKDVRRVRTMMKERKIQKIPGCSWIEL 579
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 181/358 (50%), Gaps = 26/358 (7%)
Query: 30 RMALFTDARVLFDK-----MPF---RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
R L AR +F++ +P+ D WN ++ ++ +D L LF ++ G+
Sbjct: 43 RQYLAEFARCVFEEHHVYSLPYGETEDPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVS 102
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
DK +L ++ AC+RL + G +H + K GL L ++N L+ +Y KC + + ++
Sbjct: 103 VDKFSLSLVLKACSRLGFVKAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQV 162
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD--KDIVLWRSMMHGCVKAKQPE 199
FD M +R+ VS N +I+GY+ L++ ARE+FD + K+++ W ++ G Q
Sbjct: 163 FDRM-PQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEMKNLISWNCLISG---YAQTS 218
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSN-LQYGRLVHRFILQNNIT-QDAFVKTA 257
+ + + K+ E P+++ ++S S + +++GR+ L + + +D
Sbjct: 219 DGVNIASKLFSE--MPEKD----LISWNSMIDGYVKHGRIEDAKDLFDVMPRRDVITWAT 272
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IKP 316
+ID Y+K G + +A F + +DVV + +M+ G EAL +F +ME++ + P
Sbjct: 273 MIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSP 332
Query: 317 NEATFVSVLAACRHSGLITEGCQL-FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
+E T V VL+A G +++ + F + + + + V L+D+ S+ G + A
Sbjct: 333 DETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLG--VALIDMYSKCGSIQHA 388
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 104/227 (45%), Gaps = 14/227 (6%)
Query: 166 LVDLAREVFDEI--------VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217
L + AR VF+E +D LW +++ P +L LF M++ GV+ D+
Sbjct: 46 LAEFARCVFEEHHVYSLPYGETEDPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDK 105
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
+ VL ACS L ++ G +H F+ + + D F++ LI +Y KCG L + F +
Sbjct: 106 FSLSLVLKACSRLGFVKAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDR 165
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+D V++ +MI+G GL E+ R + + K +K + + + S +
Sbjct: 166 MPQRDSVSYNSMIDGYVKCGL-IESARELFDLMPKEMKNLISWNCLISGYAQTSDGVNIA 224
Query: 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
+LF M + + + ++D + G + A++ +MP D
Sbjct: 225 SKLFSEMP-----EKDLISWNSMIDGYVKHGRIEDAKDLFDVMPRRD 266
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 254/462 (54%), Gaps = 7/462 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + KT L SD+++ N LI Y + AR +FD+MP RD S+N+++ Y
Sbjct: 144 GLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVK 203
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
LI + +F+ + + L+ S + + G + E L
Sbjct: 204 RG-----LIESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLIS 258
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+++ Y K +++A LFD M RR++V+ +I+GY + V A+ +FD++ +D
Sbjct: 259 WNSMIDGYVKHGRIEDAKDLFDAM-PRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRD 317
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V + SMM G V+ K EALE+F M E ++PDE +V VLSA + L L +H
Sbjct: 318 VVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMH 377
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I++ + ALIDMYSKCGS++ A++ F + K + W MI GLA +GLG
Sbjct: 378 LYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGE 437
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A + Q+ER+ IKP++ TFV VL AC HSGL+ EG F M ++++P ++H+ C+
Sbjct: 438 SAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 497
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+LSR+G + A+ I+ MP E + ++ L+AC + EF+ G+ V +++ +
Sbjct: 498 VDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHHKEFETGELVGKHLILQAGYNP 557
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+YVLLSN YA G W +V R MKE + K PG S I+L
Sbjct: 558 SSYVLLSNMYASFGKWKDVRRIRTMMKERKIEKIPGCSWIEL 599
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 165/342 (48%), Gaps = 46/342 (13%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN ++ ++ D + L+LF ++ G+ DK ++ ++ AC+RL + G +H
Sbjct: 93 WNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQIHGILR 152
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K GL L ++N L+ +Y KC + A ++FD M +R+ VS N +I+GY+ L++ AR
Sbjct: 153 KTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRM-PQRDSVSFNSMIDGYVKRGLIESAR 211
Query: 172 EVFDEIVD--KDIVLWRSMMHGCVK------------AKQPEEALELFKKMIDEGVTPDE 217
E+FD + K+++ W S++ G + A+ PE+ L + MID V
Sbjct: 212 ELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLISWNSMIDGYV---- 267
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNIT-QDAFVKTALIDMYSKCGSLEEALVTFY 276
++GR+ L + + +D +ID Y+K G + +A F
Sbjct: 268 ----------------KHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFD 311
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLIT 335
+ +DVV++ +M+ G EAL +F ME++ + P+E T V VL+A G ++
Sbjct: 312 QMPHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLS 371
Query: 336 EGCQLFRRMGGVYRVQPTI----EHFVCLVDLLSRAGLLYQA 373
+ + +Y V+ + V L+D+ S+ G + A
Sbjct: 372 KAMDMH-----LYIVEKQFFLGGKLGVALIDMYSKCGSIQHA 408
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 8/206 (3%)
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D LW +++ K P++AL LF M++ GV+ D+ M VL ACS L ++ G +
Sbjct: 88 EDPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQI 147
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + + + D F++ LI +Y KCG L A F + +D V++ +MI+G GL
Sbjct: 148 HGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLI 207
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAA-CRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
A +F M R+ +K N ++ S+++ + S + LF M + + +
Sbjct: 208 ESARELFDLMPRE-VK-NLISWNSIISGYAQTSDGVDIASNLFAEM-----PEKDLISWN 260
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAED 384
++D + G + A++ MP D
Sbjct: 261 SMIDGYVKHGRIEDAKDLFDAMPRRD 286
>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
gi|238013832|gb|ACR37951.1| unknown [Zea mays]
gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
Length = 745
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/495 (30%), Positives = 257/495 (51%), Gaps = 63/495 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
+G+ H + + + +VG+ L+ Y +M L DA+ +FD+M ++V +NT+++
Sbjct: 158 LGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLL 217
Query: 58 -------------------------IYNDFSDSG---EVLILFKQLIFEGIVADKITLVI 89
+ F+ +G + L F+++ F+GI D+ T
Sbjct: 218 RCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGS 277
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +AC L L GK +H Y + + + + +AL+ MY+KC+ + A F M S +
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRM-SCK 336
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
NI+S LI GY +GC EEA+ +F +M
Sbjct: 337 NIISWTALIVGY--------------------------GQNGC-----SEEAVRVFSEMQ 365
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+G+ PD+ + SV+S+C++L++L+ G H L + + V AL+ +Y KCGS+E
Sbjct: 366 RDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIE 425
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+A F + D V+WT ++ G A +G E + +F +M K +KP+ TF+ VL+AC
Sbjct: 426 DAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACS 485
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
+G + +GC F M + + P +H+ C++DL SR+G L +AEEFIK MP I +
Sbjct: 486 RAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGW 545
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449
LLSAC + ++G+ A N++++ Q+ +YVLL + +A +G+W +VA+ RR M++
Sbjct: 546 GTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDR 605
Query: 450 QTRKKPGNSIIDLKH 464
Q +K+PG S I K+
Sbjct: 606 QVKKEPGCSWIKYKN 620
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 208/394 (52%), Gaps = 8/394 (2%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
+++ N+L+ L D LF M RD S+N +++ ++ + L+ L+
Sbjct: 71 NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130
Query: 77 FEG--IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
G + +IT+ + A + L G+ HC ++G + + L+ MYAK
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGL 190
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+ +A R+FDEM + N+V N +I G + ++V+ AR +F+ + D+D + W +M+ G +
Sbjct: 191 IGDAKRVFDEMDGK-NVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQ 249
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+AL F++M +G+ D+ S+L+AC +LS L+ G+ +H +I++ + + FV
Sbjct: 250 NGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFV 309
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
+AL+DMYSKC S++ A F + CK++++WT +I G G EA+RVF +M+R GI
Sbjct: 310 GSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGI 369
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
P++ T SV+++C + + EG Q F + V + I LV L + G + A
Sbjct: 370 DPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMHYITVSNALVTLYGKCGSIEDAH 428
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
M D+ +S+ AL++ Y++F K+
Sbjct: 429 RLFDEMLFHDQ-VSWTALVTG---YAQFGRAKET 458
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 155/466 (33%), Positives = 254/466 (54%), Gaps = 6/466 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDA--RVLFDKMPFRDVGSWNTLMSIYN 60
K +HAH+ + L+ +V L+ ++ + D R++F ++ + + W L+ Y
Sbjct: 56 KQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYA 115
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYML 119
E ++L+ + +GI T L AC+ ++ G+ VH +G L
Sbjct: 116 LQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDL 175
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ N L+ MY KC + R+FDEM R+++S LI Y + ++ A E+FD +
Sbjct: 176 YVGNTLIDMYVKCGCLGCGHRVFDEM-LDRDVISWTSLIVAYAKVGNMEAASELFDGLPM 234
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KD+V W +M+ G + +P EALE+F++M GV DE +V V+SAC+ L +Y V
Sbjct: 235 KDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWV 294
Query: 240 HRFILQNNI--TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
Q+ T + V +ALIDMY+KCGS+E+A F + + ++V ++++MI G A +G
Sbjct: 295 RDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHG 354
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
L A+ +F +M + IKPN TF+ VL AC H+G++ +G QLF M + V P+ +H+
Sbjct: 355 LAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHY 414
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RAG L +A +K+MP + ALL AC + D+ + A+++ +L
Sbjct: 415 ACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEP 474
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+LLSN YA G W +V++ R+ M+ +K PG S ++ K
Sbjct: 475 NGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGK 520
>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
Length = 608
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 153/492 (31%), Positives = 246/492 (50%), Gaps = 64/492 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDV------------ 49
GK +H H L DI+V +L+ FY + A +FD+MP +D
Sbjct: 104 GKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSK 163
Query: 50 -------------------GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
SWN++++ Y + E L LF++++ EG + IT+ +
Sbjct: 164 SGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATM 223
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
FS CA+ L GK + L+ M+ + AL+ MY KC+ +DE
Sbjct: 224 FSICAKTGDLETGKWARSLIAEQDLQNMI-VHTALMEMYVKCRAIDE------------- 269
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
AR FD + +D+V W +M+ G + +P E+LELF++M
Sbjct: 270 -------------------ARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKA 310
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
P+E +V VLSAC+ L + + G + + N+ +++ +ALIDMY+KCG +
Sbjct: 311 TSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGR 370
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F + + K V+TW +M+ GLA G +A+ ++ +M + ++PNE TFV++L AC H
Sbjct: 371 ARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTH 430
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+GL+ +G F+ M ++ V P +EH C+VDLL ++G L +A +FI M E + +
Sbjct: 431 AGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWS 490
Query: 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450
LLSAC +++ +L K A+ ++ L + YVLLSN YA G W +V E R M+
Sbjct: 491 TLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKN 550
Query: 451 TRKKPGNSIIDL 462
+K S I+L
Sbjct: 551 VQKLSAYSWIEL 562
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 161/304 (52%), Gaps = 2/304 (0%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR LFD +P TL+S + E+L F L G + ++ +CA
Sbjct: 38 ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAI 97
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
L GK VHC+A GL + ++ AL+ YAK +MD A+++FDEM ++ + +N
Sbjct: 98 LAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEM-PVKDPIPMNC 156
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
LI GY V AR +FD +V + W SM+ + +EAL LF++M+ EG P+
Sbjct: 157 LITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPN 216
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
+ ++ S C+ +L+ G+ I + ++ Q+ V TAL++MY KC +++EA F
Sbjct: 217 AITIATMFSICAKTGDLETGKWARSLIAEQDL-QNMIVHTALMEMYVKCRAIDEARREFD 275
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
+ +DVV W+TMI G A G +E+L +F +M+ KPNE T V VL+AC G
Sbjct: 276 RMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDEL 335
Query: 337 GCQL 340
G Q+
Sbjct: 336 GGQI 339
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 4/175 (2%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
AR +FD + L +++ + +E L+ F + G + V+ +C+
Sbjct: 38 ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAI 97
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
L+ + G+ VH + + D FV+TAL+D Y+K G ++ A+ F + KD + +
Sbjct: 98 LAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCL 157
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
I G + G +A R+F M R+ A++ S++A H G E +LFRRM
Sbjct: 158 ITGYSKSGDVVKARRLFDGMVRR----TSASWNSMIACYAHGGEYQEALRLFRRM 208
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 24/184 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G + +HV L Y+G++LI Y + AR +F++M + V +WN++M
Sbjct: 335 LGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLA 394
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-------KTVHCYAT 111
N F+ + + L+K++ E + ++IT V L +AC + G KT+H +
Sbjct: 395 LNGFAQ--DAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSP 452
Query: 112 KVGLEYMLNMENALLLMYAKCK--EMDEALRLFDEMGSRRNIVSLNILIN---GYIDMEL 166
+V E+ ++ CK + EA + +M N V + L++ + D+EL
Sbjct: 453 QV--------EHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVEL 504
Query: 167 VDLA 170
LA
Sbjct: 505 AKLA 508
>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
Length = 681
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/447 (32%), Positives = 244/447 (54%), Gaps = 33/447 (7%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D++V +SL+H Y R DA +FD+MP RD +W+T+++ + + + +++++
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+G+ D++ ++ + AC + G +VH + + G+ + +L+ MYAK
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAK----- 256
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
NG L+D+A VF +V ++ V W +M+ G +
Sbjct: 257 ----------------------NG-----LLDVACRVFGLMVHRNDVSWSAMISGFAQNG 289
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
Q +EAL LF+ M G+ PD +VS L ACS++ L+ GR VH FI++ + + T
Sbjct: 290 QSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGT 348
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
A IDMYSKCGSL A + F +D++ W MI +G G +AL +F +M G++P
Sbjct: 349 AAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRP 408
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
+ ATF S+L+A HSGL+ EG F M +++ P +H+VCLVDLL+R+GL+ +A +
Sbjct: 409 DHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDL 468
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436
+ M AE + ALLS C+ + +LG+ +A+N+++L L+SN YA W
Sbjct: 469 LTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKW 528
Query: 437 TEVAEARRNMKELQTRKKPGNSIIDLK 463
+V + R+ MK+ ++K PG S I+++
Sbjct: 529 DKVRQVRKLMKDSGSKKMPGCSSIEIR 555
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 157/316 (49%), Gaps = 39/316 (12%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D T + SACARL L G++V A G + + + ++LL +YA+ M +A+++F
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVF 166
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
D M R D V W +M+ G V A QP +A+
Sbjct: 167 DRMPRR--------------------------------DRVTWSTMVAGFVSAGQPLDAI 194
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
+++++M ++GV DE VM+ V+ AC++ N++ G VH +L++ + D T+L+DMY
Sbjct: 195 QMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMY 254
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
+K G L+ A F ++ V+W+ MI G A G +EALR+F M+ GI+P+ V
Sbjct: 255 AKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALV 314
Query: 323 SVLAACRHSGLITEGCQLFRRMGG--VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
S L AC + G + +L R + G V R +D+ S+ G L A+ ++
Sbjct: 315 SALLACSNIGFL----KLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMI 370
Query: 381 PAEDKFISYKALLSAC 396
D I + A+++ C
Sbjct: 371 SDRD-LILWNAMIACC 385
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 135/298 (45%), Gaps = 37/298 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG +H H+ + + D+ SL+ Y + L A +F M R+ SW+ ++S +
Sbjct: 227 MGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFA 286
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E L LF+ + GI D LV AC+ + L G++VH + + ++
Sbjct: 287 QNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCI 345
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ A + MY+KC + A LF N++S D+
Sbjct: 346 LGTAAIDMYSKCGSLASAQMLF-------NMIS-------------------------DR 373
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D++LW +M+ C + ++AL LF++M + G+ PD S+LSA S ++ G+L
Sbjct: 374 DLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWF 433
Query: 241 RFILQN-NITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLAN 295
++ + IT L+D+ ++ G +EEA L+T K + V W ++ G N
Sbjct: 434 GCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAE-PTVAIWVALLSGCLN 490
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 7/224 (3%)
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
P AL +F+ + PD LSAC+ L +L+ G V D FV +
Sbjct: 89 SPASALRVFRAL-PPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCS 147
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
+L+ +Y++ G++ +A+ F + +D VTW+TM+ G + G +A++++ +M G+K
Sbjct: 148 SLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKG 207
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYR--VQPTIEHFVCLVDLLSRAGLLYQAE 374
+E + V+ AC + + G + G + R ++ + LVD+ ++ GLL A
Sbjct: 208 DEVVMIGVIQACTAARNVRMGASVH---GHLLRHGMRMDVVTATSLVDMYAKNGLLDVAC 264
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
+M + +S+ A++S + D ++ NM G Q
Sbjct: 265 RVFGLMVHRND-VSWSAMISGFAQNGQSDEALRLFRNMQASGIQ 307
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 78/180 (43%), Gaps = 2/180 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + + D + +G + I Y + A++LF+ + RD+ WN +++
Sbjct: 328 LGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCG 386
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-VHCYATKVGLEYML 119
+ L LF+++ G+ D T L SA + + GK C +
Sbjct: 387 AHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAE 446
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
L+ + A+ ++EA L M + + L++G ++ + ++L + D I++
Sbjct: 447 KHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILE 506
>gi|255594521|ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223520840|gb|EEF26277.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 141/429 (32%), Positives = 240/429 (55%), Gaps = 33/429 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+GK +H+ V K L + V NSL++ Y + A+++FD+M R + SWN ++S++
Sbjct: 90 IGKKIHSFVIKLGLSGCVPVANSLLNMYAKAGDSVMAKIVFDRMRLRSISSWNIMISLHM 149
Query: 60 ---------------------------NDFSDSG---EVLILFKQLIFEGIVADKITLVI 89
+S G E L LF +++ + + D+ TL
Sbjct: 150 HGGRADLALAQFEQMSERDVVTWNSMITGYSQHGFDKEALELFSRMLEDSLKPDRFTLAS 209
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG-SR 148
+ SACA +E L+ GK +H Y + + ++NAL+ MYAK ++ A + ++ G S
Sbjct: 210 ILSACANIENLNLGKQIHSYIIRTEFDISGVVQNALISMYAKTGGVEIAQSIVEQSGISD 269
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
N+++ L++GY+ + + AR +FD + D D+V W +M+ G V+ ++A+ELF+ M
Sbjct: 270 LNVIAFTALLDGYVKLGNITPARHIFDSLKDSDVVAWTAMIVGYVQNGLNDDAMELFRIM 329
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
EG P+ + ++LS S++++L +G+ +H +++ V ALI MY+K GS+
Sbjct: 330 AKEGPRPNSFTLAAMLSVSSNVASLNHGKQIHASAIRSGENLSVSVGNALITMYAKAGSI 389
Query: 269 EEALVTFYKTD-CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+A F KD V+WT+MI L +GLG E++ +F +M GIKP+ T+V VL+A
Sbjct: 390 TDAQQVFNLIQRNKDTVSWTSMIIALGQHGLGQESIELFEKMLALGIKPDHITYVGVLSA 449
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C H GL+ +G F M +++++PT+ H+ C++DL RAGLL +A FI+ MP E I
Sbjct: 450 CTHVGLVEQGRGYFNLMTSIHKIEPTLSHYACMIDLFGRAGLLQEAFSFIENMPIEPDVI 509
Query: 388 SYKALLSAC 396
++ +LLS+C
Sbjct: 510 AWGSLLSSC 518
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/442 (26%), Positives = 214/442 (48%), Gaps = 46/442 (10%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N+++ Y ++ A +FD++P RD SW T++ YN + +F ++ + ++
Sbjct: 10 NTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMFVAMMKDKVL 69
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
+ T+ +F++CA L L GK +H + K+GL + + N+LL MYAK + A +
Sbjct: 70 PTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKAGDSVMAKIV 129
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
FD M R+I S NI+I+ ++ DLA F+++ ++D+V W SM+ G + +EA
Sbjct: 130 FDRM-RLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYSQHGFDKEA 188
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
LELF +M+++ + PD + S+LSAC+++ NL G+ +H +I++ V+ ALI M
Sbjct: 189 LELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGVVQNALISM 248
Query: 262 YSKCGSLE---------------------------------EALVTFYKTDCKDVVTWTT 288
Y+K G +E A F DVV WT
Sbjct: 249 YAKTGGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITPARHIFDSLKDSDVVAWTA 308
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
MI G GL ++A+ +F M ++G +PN T ++L+ + + G Q+
Sbjct: 309 MIVGYVQNGLNDDAMELFRIMAKEGPRPNSFTLAAMLSVSSNVASLNHGKQIH---ASAI 365
Query: 349 RVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406
R + V L+ + ++AG + A++ ++ +S+ +++ I + LG+
Sbjct: 366 RSGENLSVSVGNALITMYAKAGSITDAQQVFNLIQRNKDTVSWTSMI---IALGQHGLGQ 422
Query: 407 ---KVANNMMKLG-NQSHEAYV 424
++ M+ LG H YV
Sbjct: 423 ESIELFEKMLALGIKPDHITYV 444
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 133/296 (44%), Gaps = 54/296 (18%)
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+ S N ++ GY + + A VFDEI D+D V W +M+ G + + E A+++F M
Sbjct: 4 KTTFSWNTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMFVAM 63
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS- 267
+ + V P + + +V ++C++L L G+ +H F+++ ++ V +L++MY+K G
Sbjct: 64 MKDKVLPTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKAGDS 123
Query: 268 ------------------------------LEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+ AL F + +DVVTW +MI G + +G
Sbjct: 124 VMAKIVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYSQHG 183
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRH---------------------SGLITE 336
EAL +F +M +KP+ T S+L+AC + SG++
Sbjct: 184 FDKEALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGVVQN 243
Query: 337 G-CQLFRRMGGVYRVQPTIEHF-VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
++ + GGV Q +E + +++++ LL + I PA F S K
Sbjct: 244 ALISMYAKTGGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITPARHIFDSLK 299
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/453 (32%), Positives = 239/453 (52%), Gaps = 9/453 (1%)
Query: 19 YVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE 78
++ +L+ Y + AR LFD+MP + + + + + + + +F ++ +
Sbjct: 46 HLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVAD 105
Query: 79 GIVADKITLVILFSAC----ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
G+ D + + + AC + + + GK +H G+ + + L+ +Y + E
Sbjct: 106 GVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGE 165
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+ + R+FD+M SR I + N +++ Y VD A E+F + +D+V W +++ G
Sbjct: 166 LPVSRRVFDDMPSRSTI-TWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCV 224
Query: 195 AKQPEEALELFKKMIDE---GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
A + EAL LF++M+ V P+ M ++L AC+ L+ G VH +I +N + D
Sbjct: 225 AGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDD 284
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTD-CKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
++ LIDMY KCGS++ AL F K KD+ +WTT+I GLA +G +ALR+F M+
Sbjct: 285 GYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQ 344
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370
GI P++ T V VL AC H GL+ EG F M +R+ P IEH+ C++DLL R G L
Sbjct: 345 DNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRIGRL 404
Query: 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430
+A I+ MP + + + A LSAC + +LGK A + +L V+LS+ Y
Sbjct: 405 QEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMY 464
Query: 431 ALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A W +A RR M +Q +K PG S I+LK
Sbjct: 465 AKAQDWIGLARERREMNSMQVKKTPGCSSIELK 497
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 89/370 (24%), Positives = 140/370 (37%), Gaps = 108/370 (29%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--------------- 46
GK +HA V + + D++V LI YG +R +FD MP
Sbjct: 134 GKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYAR 193
Query: 47 ----------------RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVA---DKITL 87
RDV SWNT+++ Y E L LF+Q++ A + T+
Sbjct: 194 HGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTM 253
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ ACA L G VH Y + + ++ L+ MY KC +D AL++F++
Sbjct: 254 STILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPR 313
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
++++ S +I G MHG + +AL +F
Sbjct: 314 KKDLFSWTTVICGLA--------------------------MHG-----RTTDALRMFDM 342
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M D G+ PD+ +V VL+AC+ +G LV
Sbjct: 343 MQDNGICPDDVTLVGVLNACA------HGGLV---------------------------- 368
Query: 268 LEEALVTFYKTDCKDVVT-----WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
+E L FY + K +T + MI+ L G EA + M + PN +
Sbjct: 369 -DEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRIGRLQEAYSMIRTMP---MDPNTVIWG 424
Query: 323 SVLAACRHSG 332
+ L+AC+ G
Sbjct: 425 AFLSACKVHG 434
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 28/204 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLMSIYN 60
G +HA++ + ++ D Y+ LI Y + +A +F+K P +D+ SW T++
Sbjct: 269 GIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLA 328
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + L +F + GI D +TLV + +ACA H GL Y +
Sbjct: 329 MHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACA-----------HGGLVDEGLGYFYS 377
Query: 121 ME------------NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDME 165
ME ++ + + + EA + M N V ++ + +ME
Sbjct: 378 MEAKFRITPKIEHYGCMIDLLGRIGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNME 437
Query: 166 LVDLAREVFDEIVDKDIVLWRSMM 189
L +A E + D D R M+
Sbjct: 438 LGKIAAEELTRL-DPDDPWGRVML 460
>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 158/459 (34%), Positives = 244/459 (53%), Gaps = 38/459 (8%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H HV + ++ N+LI+ Y + L +AR LFD+MP R+V SW T++S Y++ +
Sbjct: 38 VHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNL 97
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ + L ++ EG+ + T + AC L L + +H KVGLE + + +A
Sbjct: 98 NHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---RQLHGSILKVGLESDVFVRSA 154
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ Y+K E +AL +F+EM + D+V+
Sbjct: 155 LIDTYSKLGEQHDALNVFNEM--------------------------------ITGDLVV 182
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W S++ G + +E L L+K+M D+ + SVL AC+ L+ L+ GR VH +L
Sbjct: 183 WNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVL 242
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-KDVVTWTTMIEGLANYGLGNEAL 303
+ + QD + AL+DMY KCGSLE+A + F + KDV++W+TMI GLA G +AL
Sbjct: 243 KYD--QDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADAL 300
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
++F M+ KG KPN T + VL AC H+GL+ +G F+ M + + P EH+ C++DL
Sbjct: 301 KLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDL 360
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L RAG L +A + I M E ++++ LL AC + DL A ++KL Y
Sbjct: 361 LGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTY 420
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+LLSN YA W +VAE RR M+ +K PG S I++
Sbjct: 421 ILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEV 459
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 8/163 (4%)
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
++ D ++ C +Q RLVH + N F+ LI+MY K G L+EA
Sbjct: 12 LSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEAR 71
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F + ++VV+WTTMI +N L ++AL M R+G++PN T+ SVL AC G
Sbjct: 72 NLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRAC--DG 129
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQA 373
L+ L + G + +V + FV L+D S+ G + A
Sbjct: 130 LLN----LRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDA 168
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 116/252 (46%), Gaps = 18/252 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDK-MPFRDVGSWNTLMSIY 59
+G+ +H HV K D D+ + N+L+ Y + DA +LF + M +DV SW+T+++
Sbjct: 233 LGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGL 290
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYM 118
S + L LF+ + +G + IT++ + AC+ ++ G G++
Sbjct: 291 AQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPG 350
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ + + ++DEA++L EM + V+ IL+ + VDLA EI+
Sbjct: 351 REHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEIL 410
Query: 179 ---DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
D + + + +++ E+ E+ +KM GV D CS ++
Sbjct: 411 KLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKD--------PGCSW---IEV 459
Query: 236 GRLVHRFILQNN 247
+ VH FIL +N
Sbjct: 460 SKQVHAFILGDN 471
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/465 (32%), Positives = 255/465 (54%), Gaps = 34/465 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ H+ V K+ L +D +V +SLI Y R AR +FD++ +D+ SWN+++S Y+
Sbjct: 145 GQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSR 204
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+G+ + LF ++ G D++TLV + AC L L G + + + ++ +
Sbjct: 205 MGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFV 264
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+AL+ MY KC ++ A R+FD M ++++V+ N +I GY + D
Sbjct: 265 GSALIGMYGKCGDLSSARRVFDRM-VKKDVVTWNAMITGYAQNGVSD------------- 310
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
EA+ LF M + GV PD+ +V VLSAC+S+ L +G+ +
Sbjct: 311 ------------------EAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDT 352
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + D +V TALIDMY+KCGSL++AL F K+ V+W MI LA +G E
Sbjct: 353 YASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQE 412
Query: 302 ALRVFYQMERKG--IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+L +F +M ++G ++PN+ +F+ VL+AC H+GL+ EG QLF M + + P IEH C
Sbjct: 413 SLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSC 472
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL+RAG +++A +FI+ MP + + ALL AC D+ ++V + ++++ +
Sbjct: 473 MVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPLN 532
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
Y++ S +A W + A R M++ K PG S I++++
Sbjct: 533 SGNYIISSKIFANMKRWDDSARMRVLMRQRGVTKTPGCSWIEIEN 577
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 116/382 (30%), Positives = 192/382 (50%), Gaps = 41/382 (10%)
Query: 18 IYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNT----LMSIYNDFSDSGEVLILFK 73
I+ N L+H + + F +A +LF ++P+ + ++N L + + F+ + E +
Sbjct: 59 IHKPNFLLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIE---FYY 115
Query: 74 QLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
Q+ GI + T +F ACA L L++G+ H K GL ++ ++L+ MY++C
Sbjct: 116 QMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCG 175
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
E+ A R+FDE+ S +++VS N +I+GY M
Sbjct: 176 ELGCARRVFDEI-SEKDLVSWNSMISGYSRMGYAG------------------------- 209
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+A+ LF +M D G PDE +VS+L AC L +L G + F+++N + ++F
Sbjct: 210 ------DAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSF 263
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
V +ALI MY KCG L A F + KDVVTW MI G A G+ +EA+ +F M G
Sbjct: 264 VGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESG 323
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
+ P++ T V VL+AC G + G + +Q I L+D+ ++ G L A
Sbjct: 324 VNPDKITLVGVLSACASIGALDFG-KWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDA 382
Query: 374 EEFIKIMPAEDKFISYKALLSA 395
+ MP +++ +S+ A++SA
Sbjct: 383 LRVFEDMPQKNE-VSWNAMISA 403
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 142/274 (51%), Gaps = 35/274 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G + V + +D + +VG++LI YG+ + AR +FD+M +DV +WN +++ Y
Sbjct: 245 LGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYA 304
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E +ILF + G+ DKITLV + SACA + L +GK + YA++ GL+ +
Sbjct: 305 QNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIY 364
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAKC +D+ALR+F++M ++N VS N +I+
Sbjct: 365 VSTALIDMYAKCGSLDDALRVFEDM-PQKNEVSWNAMISAL------------------- 404
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG--VTPDEEVMVSVLSACSSLSNLQYGRL 238
HG +P+E+L LFK+M EG V P++ + VLSAC + GR
Sbjct: 405 -------AFHG-----RPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQ 452
Query: 239 VHRFILQN-NITQDAFVKTALIDMYSKCGSLEEA 271
+ + + + + ++D+ ++ G + EA
Sbjct: 453 LFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEA 486
>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 798
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 156/482 (32%), Positives = 255/482 (52%), Gaps = 35/482 (7%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD--------- 64
+S I V NSLI Y RM AR +FD+M +DV SW L+ +Y++ D
Sbjct: 280 FESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLD 339
Query: 65 ----------------------SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHY 102
+ E + L+ Q++ +G + + SACA LE L
Sbjct: 340 AMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRG 399
Query: 103 GKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY- 161
G +H + K+G + + ++L+ MY KCK+ +A +FD + +NIV N L +GY
Sbjct: 400 GARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTL-PEKNIVCWNSLASGYS 458
Query: 162 IDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMV 221
+ ++V+ A +F ++ +++ W +++ G + +Q +AL F M+ G P E
Sbjct: 459 YNGKMVE-AMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFS 517
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK 281
SVL AC++L +L G++ H ++ + + F+ TAL DMY+K G L+ + FY+ +
Sbjct: 518 SVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPER 577
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
+ VTWT MI+GLA G E++ + M G+ PNE TF+++L AC H GL+ + F
Sbjct: 578 NDVTWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYF 637
Query: 342 RRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
+M + + P +H+ C+VD+L+RAG L +AE + P++ + S+ ALLSAC TY
Sbjct: 638 EKM-QAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKN 696
Query: 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
++G++ A + +LG + YVLLSN YA G W + A R MK +K G S +
Sbjct: 697 EEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQ 756
Query: 462 LK 463
++
Sbjct: 757 VR 758
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/438 (24%), Positives = 196/438 (44%), Gaps = 76/438 (17%)
Query: 24 LIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS-------------IYNDFSDSGEV-- 68
++H + + AR LFD MP R+V S+ T++ +Y SG V
Sbjct: 157 MVHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQ-CPSGSVAF 215
Query: 69 -----------------LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
L +F++++ G+ + IT V + AC + ++ A
Sbjct: 216 FTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAI 275
Query: 112 KVGL-EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLA 170
K E + ++N+L+ +Y + + A ++FDEM +++VS L++ Y + +D A
Sbjct: 276 KSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEM-DVKDVVSWTALLDVYSESGDLDGA 334
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230
R V D + +++ V W +++ + EA++L+ +M+ +G P+ SVLSAC++L
Sbjct: 335 RRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATL 394
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC------------------------- 265
+L+ G +H L+ + + FV ++LIDMY KC
Sbjct: 395 EDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLA 454
Query: 266 ------GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
G + EA+ F K +++ +W T+I G A +ALR F M G P E
Sbjct: 455 SGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEI 514
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEE 375
TF SVL AC + + G +M ++ +E + L D+ +++G L ++
Sbjct: 515 TFSSVLLACANLCSLVTG-----KMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKR 569
Query: 376 FIKIMPAEDKFISYKALL 393
MP E +++ A++
Sbjct: 570 MFYQMP-ERNDVTWTAMI 586
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 138/321 (42%), Gaps = 52/321 (16%)
Query: 12 TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLIL 71
T + +I NSL Y +A LF KMP R++ SWNT++S Y + L
Sbjct: 441 TLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRS 500
Query: 72 FKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK 131
F ++ G V +IT + ACA L L GK H K+G+E + + AL MYAK
Sbjct: 501 FNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAK 560
Query: 132 CKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHG 191
++ + R+F +M R ++ W +M+ G
Sbjct: 561 SGDLQSSKRMFYQMPERNDVT--------------------------------WTAMIQG 588
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI-----LQN 246
+ EE++ L + M+ G+TP+E +++L ACS +G LV + I +Q
Sbjct: 589 LAENGFAEESILLLEDMMATGMTPNEHTFLALLFACS------HGGLVEQAIHYFEKMQA 642
Query: 247 -NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYG---LGNE 301
I+ T ++D+ ++ G L EA KT K + +W ++ Y +G
Sbjct: 643 WGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGER 702
Query: 302 ALRVFYQMERKGIKPNEATFV 322
A + +++ K N A +V
Sbjct: 703 AAKRLHELG----KDNTAGYV 719
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/364 (20%), Positives = 147/364 (40%), Gaps = 71/364 (19%)
Query: 98 EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE--MGSRRNIVSLN 155
E+L ++H +A + G+ ++ + LL YA E R F + + + +
Sbjct: 96 ERLPLALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYD 155
Query: 156 ILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL----------- 204
+++ ++ + AR +FD + ++++V + +M+ +K + EA+EL
Sbjct: 156 FMVHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAF 215
Query: 205 --------------------FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
F+KM+ GV P+ V ++ AC + +
Sbjct: 216 FTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAI 275
Query: 245 QNNITQDAF-VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG------ 297
++N + + V+ +LI +Y + G A F + D KDVV+WT +++ + G
Sbjct: 276 KSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGAR 335
Query: 298 -----------------------LGN--EALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
GN EA++++ QM G +PN + F SVL+AC
Sbjct: 336 RVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLE 395
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+ G ++ R ++ + FV L+D+ + A+ +P E + +
Sbjct: 396 DLRGGARIHAR---SLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLP-EKNIVCWN 451
Query: 391 ALLS 394
+L S
Sbjct: 452 SLAS 455
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 31/242 (12%)
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLS-------------------ACSSLSNLQYGRLVHR 241
AL L + GV D V +L+ A + S Y +VH
Sbjct: 101 ALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDFMVHE 160
Query: 242 FILQNNIT-----------QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
+ +I ++ T ++D K G + EA+ + + V +T I
Sbjct: 161 HVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATI 220
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
G L + AL VF +M G++PN TFV ++ AC +G +
Sbjct: 221 SGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFF 280
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
+ +IE L+ L R G A + M +D +S+ ALL + D ++V +
Sbjct: 281 ESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKD-VVSWTALLDVYSESGDLDGARRVLD 339
Query: 411 NM 412
M
Sbjct: 340 AM 341
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 89/205 (43%), Gaps = 14/205 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK HA K ++ I++G +L Y + ++ +F +MP R+ +W ++ +
Sbjct: 532 GKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAE 591
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACAR----LEKLHYGKTVHCYATKVGLEY 117
+ E ++L + ++ G+ ++ T + L AC+ + +HY + + + ++
Sbjct: 592 NGFAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQAWGISPKEKH 651
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI---NGYIDMELVDLAREVF 174
M + L A+ + EA L + S+ S L+ N Y + E+ + A +
Sbjct: 652 YTCMVDVL----ARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAKRL 707
Query: 175 DEIVDKDI---VLWRSMMHGCVKAK 196
E+ + VL +M C + K
Sbjct: 708 HELGKDNTAGYVLLSNMYASCGRWK 732
>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 145/463 (31%), Positives = 248/463 (53%), Gaps = 33/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA+ + ++ + +L+ Y + L AR +F+ + ++ W+ ++ Y
Sbjct: 229 GKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVL 288
Query: 62 FSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L L+ ++ G+ TL + ACA+L L GK +HC+ K G++
Sbjct: 289 HDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTT 348
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ MYAKC MD A+ G++D E++ K
Sbjct: 349 VGNSLISMYAKCGIMDNAV--------------------GFLD------------EMIAK 376
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V + +++ GCV+ E+AL +F++M G+ P E M+++L ACS L+ LQ+G H
Sbjct: 377 DTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCH 436
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + T D + A+IDMYSKCG + + F + +D+++W TMI G +GL
Sbjct: 437 GYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCV 496
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F +++ G+KP++ T ++VL+AC HSGL+TEG F M + ++P + H++C+
Sbjct: 497 EALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICM 556
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL+RAG L +A FI+ MP + ALL+AC T+ ++G++V+ + LG +
Sbjct: 557 VDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGT 616
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VL+SN Y+ G W + A R + +K PG S +++
Sbjct: 617 GNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEIS 659
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/399 (24%), Positives = 191/399 (47%), Gaps = 43/399 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSI 58
+G+ +H H L D+YV +L+H Y + A+ LF+ + RD+ +WN +++
Sbjct: 125 LGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAA 184
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
++ + + + Q+ G+ + TLV + + LH GK +H Y +
Sbjct: 185 FSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDN 244
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ ++ ALL MYAKC + A ++F+ + +++N V + +I GY+ + + A ++D+++
Sbjct: 245 VVLQTALLDMYAKCHLLFYARKIFNTV-NKKNDVCWSAMIGGYVLHDSISDALALYDDML 303
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
C+ G+ P + ++L AC+ L++L+ G+
Sbjct: 304 -------------CI-----------------YGLNPTPATLATMLRACAQLTDLKRGKK 333
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++++ + D V +LI MY+KCG ++ A+ + KD V+++ +I G G
Sbjct: 334 LHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGY 393
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG--CQLFRRMGGVYRVQPTIEH 356
+AL +F QM+ GI P T +++L AC H + G C + + G T +
Sbjct: 394 AEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGF-----TNDT 448
Query: 357 FVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
+C ++D+ S+ G + + E M D IS+ ++
Sbjct: 449 SICNAIIDMYSKCGKITISREIFDRMQNRD-IISWNTMI 486
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 164/373 (43%), Gaps = 55/373 (14%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR +FD++P V WN ++ Y + + L+ ++ G+ T L AC+
Sbjct: 60 ARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSS 119
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
L+ L G+ +H +A +GL L + ALL MYAKC + +A LF+ + +
Sbjct: 120 LQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQ-------- 171
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
D+DIV W +M+ + + +M GVTP+
Sbjct: 172 ----------------------DRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPN 209
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
+VS+L + L G+ +H + ++N + ++TAL+DMY+KC L A F
Sbjct: 210 SSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFN 269
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME-RKGIKPNEATFVSVLAACR------ 329
+ K+ V W+ MI G + ++AL ++ M G+ P AT ++L AC
Sbjct: 270 TVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLK 329
Query: 330 -----HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
H +I G L +G L+ + ++ G++ A F+ M A+D
Sbjct: 330 RGKKLHCHMIKSGMDLDTTVGN------------SLISMYAKCGIMDNAVGFLDEMIAKD 377
Query: 385 KFISYKALLSACI 397
+SY A++S C+
Sbjct: 378 T-VSYSAIISGCV 389
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 2/179 (1%)
Query: 161 YIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVM 220
+I + LAR VFD+I +VLW M+ + ++++ L+ M+ GVTP
Sbjct: 51 HISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTF 110
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC 280
+L ACSSL LQ GRL+H ++ D +V TAL+ MY+KCG L +A F
Sbjct: 111 PFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISH 170
Query: 281 --KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+D+V W MI + + L + + QM++ G+ PN +T VS+L + + +G
Sbjct: 171 QDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQG 229
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 156/456 (34%), Positives = 245/456 (53%), Gaps = 16/456 (3%)
Query: 12 TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLIL 71
+ +D +I N L+ Y R DAR LFD+MP RD SWN +++ Y E L
Sbjct: 209 SKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRL 268
Query: 72 FKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME---NALLLM 128
F++L + A +V F L++ AT++ E E NA++
Sbjct: 269 FEELPIRDVFA-WTAMVSGFVQNGMLDE----------ATRIFEEMPEKNEVSWNAMIAG 317
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
Y + +++++A LFD+M SR N S N ++ GY +D A+ +FDE+ +D + W +M
Sbjct: 318 YVQSQQIEKARELFDQMPSR-NTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAM 376
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ G ++ Q EEAL LF KM +G + + LS+C+ ++ L+ G+ +H +++
Sbjct: 377 ISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGF 436
Query: 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
AL+ MY KCGS+EEA F KD+V+W TMI G A +G G EAL +F
Sbjct: 437 QTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFES 496
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
M + IKP++ T V VL+AC H+GL+ +G + F M Y + +H+ C++DLL RAG
Sbjct: 497 M-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAG 555
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428
L +A +K MP ++ ALL A + + +LG+K A + ++ + YVLLSN
Sbjct: 556 RLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSN 615
Query: 429 FYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YA G W EV E R M++ +K PG S +++++
Sbjct: 616 LYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQN 651
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 165/330 (50%), Gaps = 17/330 (5%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
D D+ N ++ Y + + AR LF++MP +DV SWN ++S + E +F Q
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQ 178
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+ +V ++I+ L SA + ++ + + + +K +++ + N L+ Y + K
Sbjct: 179 M----LVKNEISWNGLLSAYVQNGRIEDARRL--FDSK--MDWEIVSWNCLMGGYVRKKR 230
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+D+A LFD M R I S NI+I GY L+ AR +F+E+ +D+ W +M+ G V+
Sbjct: 231 LDDARSLFDRMPVRDKI-SWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQ 289
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+EA +F++M ++ +E ++++ ++ R + + N +
Sbjct: 290 NGMLDEATRIFEEMPEK----NEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSS---- 341
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
++ Y++CG++++A + F + +D ++W MI G A G EAL +F +M+R G
Sbjct: 342 WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGG 401
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRM 344
N + L++C + G QL R+
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRL 431
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 139/327 (42%), Gaps = 65/327 (19%)
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N + Y + + + AL +F+ M RR+ V+ N +I+GY+ D AR+VF+++ D+D+
Sbjct: 64 NRKISAYMRKGQCESALSVFNGM-RRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDL 122
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP---------------------DEEVMV 221
+ W M+ G VK A LF +M ++ V D+ ++
Sbjct: 123 ISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVK 182
Query: 222 SVLSACSSLSN-LQYGRL--VHRF--------ILQNNITQDAFVKTALID---------- 260
+ +S LS +Q GR+ R I+ N +V+ +D
Sbjct: 183 NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMP 242
Query: 261 ------------MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
Y++ G L EA F + +DV WT M+ G G+ +EA R+F +
Sbjct: 243 VRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEE 302
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
M K NE ++ +++A S I + +LF +M + +V ++ G
Sbjct: 303 MPEK----NEVSWNAMIAGYVQSQQIEKARELFDQM-----PSRNTSSWNTMVTGYAQCG 353
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSA 395
+ QA+ MP D IS+ A++S
Sbjct: 354 NIDQAKILFDEMPQRD-CISWAAMISG 379
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 18/219 (8%)
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
IVD DIV W + ++ Q E AL +F M T M+S LSN ++
Sbjct: 55 IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRS-TVTYNAMIS-----GYLSNNKFD 108
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
R + + +D ++ Y K G+L A F + KDVV+W M+ G A
Sbjct: 109 --CARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G EA ++F QM + NE ++ +L+A +G I + +LF ++ I
Sbjct: 167 GFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDS-----KMDWEIVS 217
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ CL+ R L A MP DK IS+ +++
Sbjct: 218 WNCLMGGYVRKKRLDDARSLFDRMPVRDK-ISWNIMITG 255
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 27/228 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH + K + GN+L+ YG+ +A +F+ + +D+ SWNT+++ Y
Sbjct: 423 LGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYA 482
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF+ + I D +TLV + SAC+ H G+EY +
Sbjct: 483 RHGFGKEALALFESMKMT-IKPDDVTLVGVLSACS-----------HTGLVDKGMEYFNS 530
Query: 121 M-------ENA-----LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDME 165
M NA ++ + + +DEAL L M + + L+ + D E
Sbjct: 531 MYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTE 590
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
L + A E E+ + ++ + + + + E E+ KM D+GV
Sbjct: 591 LGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGV 638
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 159/462 (34%), Positives = 256/462 (55%), Gaps = 7/462 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G H + KT + SD+++ N LI Y + AR +FD+M RD S+N+++ Y
Sbjct: 142 GMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVK 201
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
LI + +F+ + ++K L+ S + G + E L
Sbjct: 202 CG-----LIESARELFDLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLIS 256
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ Y K +++A LFD+M RR++V+ +++GY + V A+ +FD++ +D
Sbjct: 257 WNSLIDGYVKHGRIEDAKDLFDKM-PRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRD 315
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V + SMM G V+ + EA+++F M E ++PDE +V VLSA + L L +H
Sbjct: 316 VVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMH 375
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ ++ + ALIDMYSKCGS+++A+ F + + K + W MI GLA +GLG
Sbjct: 376 LYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGE 435
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A + Q+ER+ IKP++ TFV VL AC HSGL+ EG F M ++++P ++H+ C+
Sbjct: 436 SAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCM 495
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+LSR+G + A+ I+ MP E + ++ L+AC + EF+ G+ VA +++ +
Sbjct: 496 VDILSRSGRIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNP 555
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+YVLLSN YA G W EV R MKE + +K PG S I+L
Sbjct: 556 SSYVLLSNMYASLGMWKEVRRVRTMMKERKIQKIPGCSWIEL 597
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 175/332 (52%), Gaps = 26/332 (7%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN ++ ++ + + L+LF ++ G+ DK +L ++ AC+RL + G H +
Sbjct: 91 WNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQXHGFLR 150
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K G+ L ++N L+ +Y KC + A ++FD M S+R+ VS N +I+GY+ L++ AR
Sbjct: 151 KTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRM-SQRDSVSYNSMIDGYVKCGLIESAR 209
Query: 172 EVFDEIVD--KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
E+FD + K+++ W SM++G Q + +++ + DE P+++++ + +S
Sbjct: 210 ELFDLMPSEKKNLISWNSMINGYA---QRADGVDIASNLFDE--MPEKDLI-----SWNS 259
Query: 230 LSN--LQYGRLVHRFILQNNIT-QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
L + +++GR+ L + + +D ++D Y+K G + +A F + +DVV +
Sbjct: 260 LIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAY 319
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
+M+ G EA+ +F ME++ + P+E T V VL+A G +++ +
Sbjct: 320 NSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMH---- 375
Query: 346 GVYRVQPTI----EHFVCLVDLLSRAGLLYQA 373
+Y V+ + V L+D+ S+ G + QA
Sbjct: 376 -LYTVEKKFLLGGKLGVALIDMYSKCGSIQQA 406
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 36/248 (14%)
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D LW +++ +P +AL LF M+ GV+ D+ + VL ACS L ++ G
Sbjct: 86 EDPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQX 145
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H F+ + I D F++ LI +Y KCG L A F + +D V++ +MI+G GL
Sbjct: 146 HGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLI 205
Query: 300 NEALRVFYQM--ERKGI----------------------------KPNEATFVSVLAACR 329
A +F M E+K + + + ++ S++
Sbjct: 206 ESARELFDLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYV 265
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
G I + LF +M + + + +VD ++ G ++QA+ MP D ++Y
Sbjct: 266 KHGRIEDAKDLFDKMP-----RRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRD-VVAY 319
Query: 390 KALLSACI 397
++++ +
Sbjct: 320 NSMMAGYV 327
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 94/231 (40%), Gaps = 42/231 (18%)
Query: 221 VSVLSACSS---LSNLQYGRLVHRFILQNNITQD-----AFVKTALIDMYSKCGSLEEAL 272
+ +L C + +S + + FI N+T A + + + +++C E +
Sbjct: 18 IQLLGTCKTSEDVSKIHARKGTTGFIKNTNLTTRIVLAFAASRRSYLAEFARCVFHEYHV 77
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
+ + +D W +I+ ++ +AL +F+ M + G+ ++ + VL AC G
Sbjct: 78 SSXXSGNVEDPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLG 137
Query: 333 LITEGCQL--FRRMGGVYR----------------------------VQPTIEHFVCLVD 362
+ EG Q F R G++ Q + ++D
Sbjct: 138 FVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMID 197
Query: 363 LLSRAGLLYQAEEFIKIMPAEDK-FISYKALLSACITYSEFDLGKKVANNM 412
+ GL+ A E +MP+E K IS+ ++++ Y++ G +A+N+
Sbjct: 198 GYVKCGLIESARELFDLMPSEKKNLISWNSMING---YAQRADGVDIASNL 245
>gi|357464861|ref|XP_003602712.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
gi|355491760|gb|AES72963.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
Length = 867
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/466 (31%), Positives = 255/466 (54%), Gaps = 5/466 (1%)
Query: 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
GK +HA++ + L D GN+L+ FY + +A F + +D+ SWN+++ +
Sbjct: 367 GKQVHAYILRHPFLFEDTSAGNALVSFYAKCGYIEEAYHTFSMISRKDLISWNSILDAFG 426
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG---LEY 117
+ L L ++ I D +T++ + CA L ++ K +H Y+ + G
Sbjct: 427 EKRHHSRFLSLLHVMLKLDIRPDSVTILTIIHFCASLLRVKKVKEIHGYSIRSGSLLCAT 486
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ NA+L Y+KC ++ A ++F + +RN+V+ N LI+GY+ + A +F +
Sbjct: 487 APTVGNAILDAYSKCGNIEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHYDANMIFSGM 546
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+ D+ W M+ + PE+ALELF K+ +G+ PD ++S++ C+ ++++ R
Sbjct: 547 SETDLTTWNLMVRVYAENDCPEQALELFLKLQTQGMKPDVVTIMSLIPVCTQMASVHLLR 606
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
H +I++++ +D +K L+D Y+KCG + A F + KD+V +T MI G A +G
Sbjct: 607 QCHGYIIRSSF-EDLHLKGTLLDAYAKCGIIGYAYKIFQSSVDKDLVMFTAMIGGYAMHG 665
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+ +AL F M GIKP+ F S+L+AC H+G I EG ++F + ++ ++PTIE F
Sbjct: 666 MSEKALETFSHMLNMGIKPDHVIFTSILSACSHAGRIAEGLKIFDSIEKIHGMKPTIEQF 725
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL+R G + +A F+ +P E + LL AC TY E +LG+ VA+ + K+
Sbjct: 726 ACVVDLLARGGHVSEAYSFVTKIPIEANANIWGTLLGACKTYHEVELGRIVADKLFKIEA 785
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y++LSN YA + W V E R+ M+ +K G S I+++
Sbjct: 786 NDIGNYIVLSNLYAADDRWDGVMEVRKMMRNKDLKKPAGCSWIEVE 831
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 109/402 (27%), Positives = 184/402 (45%), Gaps = 39/402 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH++V K S +L++ Y + + D LFD+ D WN ++S Y+
Sbjct: 55 LGKCLHSYVVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYS 114
Query: 61 -DFSDSGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ +V+ +F+ + G ++ +T+ + CAR L+ GK+VH Y K G E
Sbjct: 115 RSGKNDADVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGGKSVHGYVIKSGFEMD 174
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
NAL+ MYAKC G + + A VFD I+
Sbjct: 175 TFAGNALVSMYAKC---------------------------GLVACD----AYAVFDSII 203
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS-NLQY-- 235
KD+V W +M+ G + +EA LF M+ V P+ + ++L C+S N+ +
Sbjct: 204 HKDVVSWNAMIAGLAENGLLKEAFSLFSLMMKGSVKPNYATVANILPVCASFDENIAHRC 263
Query: 236 GRLVHRFILQ-NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
GR +H ++LQ ++ D V AL+ Y K G +EA F+ D +D+V+W T+I G A
Sbjct: 264 GRQIHSYVLQWPELSADVSVCNALLSFYLKVGRTKEAESLFWAMDARDLVSWNTIIAGYA 323
Query: 295 NYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
G ++L VF + + + + T VS+L AC + G Q+ + +
Sbjct: 324 LNGEWLKSLHVFGNLVSLEMLLLDSVTMVSILPACAQLDNLQAGKQVHAYILRHPFLFED 383
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
LV ++ G + +A ++ +D IS+ ++L A
Sbjct: 384 TSAGNALVSFYAKCGYIEEAYHTFSMISRKD-LISWNSILDA 424
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 116/248 (46%), Gaps = 33/248 (13%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D L + +C+ L + GK +H Y K G ALL MYAKC +D+ +LF
Sbjct: 36 DHEVLAAILKSCSALLASNLGKCLHSYVVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLF 95
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
D+ G R + V NI+++GY RS K + +
Sbjct: 96 DQFG-RCDPVIWNIVLSGYS-----------------------RS-------GKNDADVM 124
Query: 203 ELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
++F+ M G V P + +VL C+ NL G+ VH +++++ D F AL+ M
Sbjct: 125 KVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGGKSVHGYVIKSGFEMDTFAGNALVSM 184
Query: 262 YSKCGSLE-EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
Y+KCG + +A F KDVV+W MI GLA GL EA +F M + +KPN AT
Sbjct: 185 YAKCGLVACDAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSLMMKGSVKPNYAT 244
Query: 321 FVSVLAAC 328
++L C
Sbjct: 245 VANILPVC 252
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 185 WRSMMHG-CVKAKQPEEALELFKKMIDEGVT--PDEEVMVSVLSACSSLSNLQYGRLVHR 241
W S + CV ++ EAL F + + PD EV+ ++L +CS+L G+ +H
Sbjct: 3 WASTIRSLCVDSRH-NEALSFFHHCLKDSAAFKPDHEVLAAILKSCSALLASNLGKCLHS 61
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN- 300
++++ AL++MY+KCG L++ F + D V W ++ G + G +
Sbjct: 62 YVVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSRSGKNDA 121
Query: 301 EALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEG 337
+ ++VF M G + P+ T +VL C SG + G
Sbjct: 122 DVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGG 159
>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 153/466 (32%), Positives = 243/466 (52%), Gaps = 40/466 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + T+ +D+ V ++ Y + AR +FD ++ +W+ ++ Y +
Sbjct: 224 GKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVE 283
Query: 62 ---FSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
++GEV F+ L+ + + + + + ++ CAR L G+ VHCYA K G
Sbjct: 284 NEMIKEAGEVF--FQMLVNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFIL 341
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L ++N ++ YAK + +A R F E+G
Sbjct: 342 DLTVQNTIISFYAKYGSLCDAFRQFSEIGL------------------------------ 371
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
KD++ + S++ GCV +PEE+ LF +M G+ PD ++ VL+ACS L+ L +G
Sbjct: 372 --KDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGS 429
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
H + + + + + AL+DMY+KCG L+ A F +D+V+W TM+ G +G
Sbjct: 430 SCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHG 489
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG-GVYRVQPTIEH 356
LG EAL +F M+ G+ P+E T +++L+AC HSGL+ EG QLF M G + V P I+H
Sbjct: 490 LGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDH 549
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+ DLL+RAG L +A +F+ MP E LLSAC TY +LG +V+ M LG
Sbjct: 550 YNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKMQSLG 609
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ E+ VLLSN Y+ W + A R K+ K PG S +D+
Sbjct: 610 -ETTESLVLLSNTYSAAERWEDAARIRMIQKKRGLLKTPGYSWVDV 654
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 119/431 (27%), Positives = 209/431 (48%), Gaps = 45/431 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+HV + +D+YV +L+ FY + A +FD+MP RD+ +WN ++S ++
Sbjct: 122 GKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSL 181
Query: 62 FSDSGEVLILFKQL-IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+V+ LF + +G+ + T+V +F A R L GK VH Y T++G L
Sbjct: 182 HCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLV 241
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++ +L +YAK K + A R+FD + ++N V+ + +I GY++ E++ A EVF
Sbjct: 242 VKTGILDVYAKSKCIIYARRVFD-LDFKKNEVTWSAMIGGYVENEMIKEAGEVF------ 294
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS-VLSACSSLSNLQYGRLV 239
F+ ++++ V V + +L C+ +L GR V
Sbjct: 295 ------------------------FQMLVNDNVAMVTPVAIGLILMGCARFGDLSGGRCV 330
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + ++ D V+ +I Y+K GSL +A F + KDV+++ ++I G
Sbjct: 331 HCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRP 390
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG--CQLFRRMGGVYRVQPTIEHF 357
E+ R+F++M GI+P+ T + VL AC H + G C + + G Y V +I +
Sbjct: 391 EESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHG-YAVNTSICN- 448
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK---VANNMMK 414
L+D+ ++ G L A+ M D +S+ +L + LGK+ + N+M +
Sbjct: 449 -ALMDMYTKCGKLDVAKRVFDTMHKRD-IVSWNTML---FGFGIHGLGKEALSLFNSMQE 503
Query: 415 LGNQSHEAYVL 425
G E +L
Sbjct: 504 TGVNPDEVTLL 514
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 3/180 (1%)
Query: 161 YIDMELVDLAREVFDEIVDKDI--VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE 218
Y V+LAR VFDEI I + W M+ E+AL+L+ KM++ GV P +
Sbjct: 45 YASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKY 104
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
VL AC+ L + G+L+H + ++ D +V TAL+D Y+KCG LE A+ F +
Sbjct: 105 TYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEM 164
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMER-KGIKPNEATFVSVLAACRHSGLITEG 337
+D+V W MI G + + + + +F M R G+ PN +T V + A +G + EG
Sbjct: 165 PKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREG 224
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 258/521 (49%), Gaps = 63/521 (12%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD-ARVLFDKMPFRDVGSWNTLMSIYNDFS 63
+HA + T L SD + + L+ L + A ++F ++ + NT++ Y + S
Sbjct: 30 IHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESS 89
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
L + ++ +G++ D T + AC + L G V A K G + + N
Sbjct: 90 TPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVN 149
Query: 124 ALLLMYAKCKE-------------------------------MDEALRLFDEMGSR---- 148
L+ MY +C E M+ A +FDEM R
Sbjct: 150 GLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVS 209
Query: 149 ---------------------------RNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
R++VS N +I+GY + +++ARE+FD+++ K+
Sbjct: 210 WSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKN 269
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W M+ G + + +EAL LF++M+ +G+ PD +V +SACS L L GR +H
Sbjct: 270 VISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHL 329
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ +N + D V+TAL+DMY KCGS +EA F ++VV+W MI GL G G E
Sbjct: 330 YMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKE 389
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL F QME + I ++ F+ VL AC H+ L+TEG +F +M GVYR++P +EH+ CLV
Sbjct: 390 ALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLV 449
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L Q + I+ MP + + +LL AC + L + V + +L
Sbjct: 450 DLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSG 509
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVL+SN YA G W + R+ MKE + +K G S+I++
Sbjct: 510 VYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEV 550
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 6/201 (2%)
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS----LNILINGYIDMEL-VDLAREV 173
L ++N LL + K K + L++ ++ + N++S + L++ + L V+ A V
Sbjct: 8 LQLKNPLLSLLQKSKTSSQILQIHAQLITT-NLISDTFAASRLLDSVVSKTLNVNYAELV 66
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
F +I + + +M+ ++ PE AL + +M +G+ D VL AC ++ L
Sbjct: 67 FAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGL 126
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
G LV ++ D FV LI MY +CG A F KD+V+W +M+ G
Sbjct: 127 LEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGY 186
Query: 294 ANYGLGNEALRVFYQMERKGI 314
G A +F +M + +
Sbjct: 187 VWCGEMENAQNMFDEMPERDV 207
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 5/152 (3%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H ++ + + DI V +L+ Y + +AR +F+ MP R+V SWN ++
Sbjct: 324 GRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGM 383
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG---LEYM 118
E L F Q+ E I D + + + AC+ + G +H + G LE
Sbjct: 384 NGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEG--LHIFNQMKGVYRLEPK 441
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
L L+ + + ++D+ + M + N
Sbjct: 442 LEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPN 473
>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
Length = 597
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 159/463 (34%), Positives = 235/463 (50%), Gaps = 35/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM--PFRDVGSWNTLMSIY 59
G LHA K S+ +V SL++ Y R DA+ FD+M P V SW L++ Y
Sbjct: 94 GAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQKAFDEMRQPPSTV-SWTALITAY 152
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
D E + + + G+ D T V + +ACAR+ L G+ V A K G+ +
Sbjct: 153 MDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEGIAGNV 212
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ A + +Y KC EMD+A R VFD++ +
Sbjct: 213 FVATAAVDLYVKCGEMDKA--------------------------------RGVFDKMKN 240
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KD+V W +M+ G P EALELF M EG+ PD + LSAC+ L L GR V
Sbjct: 241 KDVVAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTRLGALDLGRRV 300
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
+ + + + + TALIDMY+KCGS EA + F K +D++ W MI GL G
Sbjct: 301 VGMLQWDEVLGNPVLGTALIDMYAKCGSTGEAWMVFQKMRNRDIIVWNAMILGLGMTGHE 360
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
A + QM++ G+ N+ TF+ +L +C H+GL+ +G + FR M +Y ++P IEH+
Sbjct: 361 KIAFALVGQMKKSGMTLNDNTFIGLLCSCTHTGLVKDGRRYFRNMTQLYHIRPRIEHYGI 420
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLLSRAGLL +A + I+ MP E + + ALL C + DL + V +++L +
Sbjct: 421 MVDLLSRAGLLQEAHQLIQDMPMEANAVVWGALLGGCKIHRNADLAEHVLKQLIQLEPWN 480
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YV+LSN Y+ G W + A+ R MK K P +S ++L
Sbjct: 481 SGNYVVLSNIYSNSGRWEDAAKLRLEMKAKGVEKVPASSWVEL 523
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 144/321 (44%), Gaps = 39/321 (12%)
Query: 85 ITLVILFSACARL-EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
+T + +RL + L G +H + K+ ++ +LL +YA+C + +A + FD
Sbjct: 75 LTFPFAIKSASRLPDPLTAGAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQKAFD 134
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
EM + VS LI Y+D A + EA+
Sbjct: 135 EMRQPPSTVSWTALITAYMD-------------------------------AGRGLEAIG 163
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
+ + GV PD V VL+AC+ +++L G V + I + FV TA +D+Y
Sbjct: 164 VARSAFASGVRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYV 223
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KCG +++A F K KDVV W M+ G A+ G EAL +F+ M+ +G++P+ T
Sbjct: 224 KCGEMDKARGVFDKMKNKDVVAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAG 283
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV---CLVDLLSRAGLLYQAEEFIKIM 380
L+AC G + L RR+ G+ + + + V L+D+ ++ G +A + M
Sbjct: 284 ALSACTRLGAL----DLGRRVVGMLQWDEVLGNPVLGTALIDMYAKCGSTGEAWMVFQKM 339
Query: 381 PAEDKFISYKALLSACITYSE 401
D + +L +T E
Sbjct: 340 RNRDIIVWNAMILGLGMTGHE 360
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 249/463 (53%), Gaps = 34/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G G HAHV K SD +V N++I Y R V WN ++S Y
Sbjct: 44 GIGFHAHVLKLGHGSDAFVRNAVIDMYAR-----------------KVADWNAMVSGYWK 86
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-VHCYATKVGLEYMLN 120
+ G+ LF + + IT + + A+++ L + C + + +
Sbjct: 87 WESEGQAQWLFDVMPERNV----ITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSW--- 139
Query: 121 MENALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
NA+L YA+ +EALRLFDEM G+ RN V+ N +I+ Y+ + +D AR++F+ +
Sbjct: 140 --NAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPG 197
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+++V W SM+ G + Q A+ELFK+MI + +TPDE MVSV+SAC L L+ G
Sbjct: 198 RNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNW 257
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
V RF+ +N I A+I MYS+CGS+E+A F + +DVV++ T+I G A +G
Sbjct: 258 VVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGH 317
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G EA+ + M+ GI+P+ TF+ VL AC H+GL+ EG ++F + P I+H+
Sbjct: 318 GVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYA 372
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDLL R G L A+ ++ MP E Y +LL+A + + +LG+ AN + +L
Sbjct: 373 CMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPD 432
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+ ++LLSN YA G W +V R MK+ +K G S ++
Sbjct: 433 NSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVE 475
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 105/244 (43%), Gaps = 24/244 (9%)
Query: 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEV 68
+T+ + I N++I Y R DA+ +F +M RDV S+NTL+S + E
Sbjct: 262 LTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEA 321
Query: 69 LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
+ L + GI D++T + + +AC+ L G+ V +++ M + L
Sbjct: 322 INLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMVDLL--- 378
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDL-AREVFDEIVDK--DI 182
+ E+++A R + M + L+N + +EL +L A ++F+ D +
Sbjct: 379 -GRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNF 437
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
+L ++ + K E E KK + + S ++YG +H+F
Sbjct: 438 ILLSNIYASAGRWKDVERIREAMKK--------------GGVKKTTGWSWVEYGGKLHKF 483
Query: 243 ILQN 246
I+ +
Sbjct: 484 IVAD 487
>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 681
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 146/447 (32%), Positives = 244/447 (54%), Gaps = 33/447 (7%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D++V +SL+H Y R DA +F +MP RD +W+T+++ + + + +++++
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+G+ D++ ++ + AC + G +VH + + G+ + +L+ MYAK
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAK----- 256
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
NG L+D+A VF +V ++ V W +M+ G +
Sbjct: 257 ----------------------NG-----LLDVACRVFGLMVHRNDVSWSAMISGFAQNG 289
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
Q +EAL LF+ M G+ PD +VS L ACS++ L+ GR VH FI++ + + T
Sbjct: 290 QSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGT 348
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
A IDMYSKCGSL A + F +D++ W MI +G G +AL +F +M G++P
Sbjct: 349 AAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRP 408
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
+ ATF S+L+A HSGL+ EG F RM +++ P +H+VCLVDLL+R+GL+ +A +
Sbjct: 409 DHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDL 468
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436
+ M AE + ALLS C+ + +LG+ +A+N+++L L+SN YA W
Sbjct: 469 LTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKW 528
Query: 437 TEVAEARRNMKELQTRKKPGNSIIDLK 463
+V + R+ MK+ ++K PG S I+++
Sbjct: 529 DKVRQVRKLMKDSGSKKMPGCSSIEIR 555
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 156/316 (49%), Gaps = 39/316 (12%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D T + SACARL L G++V A G + + + ++LL +YA+ M +A+++F
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVF 166
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
M R D V W +M+ G V A QP +A+
Sbjct: 167 VRMPRR--------------------------------DRVTWSTMVAGFVSAGQPLDAI 194
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
+++++M ++GV DE VM+ V+ AC++ N++ G VH +L++ + D T+L+DMY
Sbjct: 195 QMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMY 254
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
+K G L+ A F ++ V+W+ MI G A G +EALR+F M+ GI+P+ V
Sbjct: 255 AKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALV 314
Query: 323 SVLAACRHSGLITEGCQLFRRMGG--VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
S L AC + G + +L R + G V R +D+ S+ G L A+ ++
Sbjct: 315 SALLACSNIGFL----KLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMI 370
Query: 381 PAEDKFISYKALLSAC 396
D I + A+++ C
Sbjct: 371 SDRD-LILWNAMIACC 385
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 135/302 (44%), Gaps = 45/302 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG +H H+ + + D+ SL+ Y + L A +F M R+ SW+ ++S +
Sbjct: 227 MGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFA 286
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E L LF+ + GI D LV AC+ + L G++VH + + ++
Sbjct: 287 QNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCI 345
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ A + MY+KC + A LF N++S D+
Sbjct: 346 LGTAAIDMYSKCGSLASAQMLF-------NMIS-------------------------DR 373
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL-----SNLQY 235
D++LW +M+ C + ++AL LF++M + G+ PD S+LSA S L +
Sbjct: 374 DLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWF 433
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGL 293
GR+V+ F IT L+D+ ++ G +EEA L+T K + V W ++ G
Sbjct: 434 GRMVNHF----KITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAE-PTVAIWVALLSGC 488
Query: 294 AN 295
N
Sbjct: 489 LN 490
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 7/224 (3%)
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
P AL +F+ + PD LSAC+ L +L+ G V D FV +
Sbjct: 89 SPASALRVFRAL-PPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCS 147
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
+L+ +Y++ G++ +A+ F + +D VTW+TM+ G + G +A++++ +M G+K
Sbjct: 148 SLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKG 207
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYR--VQPTIEHFVCLVDLLSRAGLLYQAE 374
+E + V+ AC + + G + G + R ++ + LVD+ ++ GLL A
Sbjct: 208 DEVVMIGVIQACTAARNVRMGASVH---GHLLRHGMRMDVVTATSLVDMYAKNGLLDVAC 264
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
+M + +S+ A++S + D ++ NM G Q
Sbjct: 265 RVFGLMVHRND-VSWSAMISGFAQNGQSDEALRLFRNMQASGIQ 307
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 137/338 (40%), Positives = 215/338 (63%), Gaps = 4/338 (1%)
Query: 128 MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRS 187
MY KC + A ++FDEM +N++ +++GY++ +D ARE+F+ KD+VLW +
Sbjct: 1 MYCKCGCLSVARKIFDEM-PHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTA 59
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247
M++G V+ +EA+ LF++M + V PD+ V+V++L+ C+ + L+ G +H +I +
Sbjct: 60 MINGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKG 119
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
I DA V T+LI+MYSKCG +E+AL F KD TWT++I GLA G ++AL +F
Sbjct: 120 IPVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFS 179
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367
+M++ P+E TF+ VL+AC H GL+ EG + F M +Y ++P +EH+ CL+DLL RA
Sbjct: 180 KMKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRA 239
Query: 368 GLLYQAEEFI-KIMPAEDKFIS--YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
G L +AEE I KI+ A ++ I Y +LLSAC Y +G++VA ++K+ ++ +
Sbjct: 240 GQLDEAEELIKKIVNANNEIIVPLYGSLLSACRIYKNVQMGERVAEQLVKIESRDSSVHT 299
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
LL+N YA G W +V RR MK+L +K PG S I++
Sbjct: 300 LLANIYASAGRWVDVNRVRREMKDLGVKKVPGCSSIEV 337
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 113/256 (44%), Gaps = 33/256 (12%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
++ S++ Y AR LF++ P +DV W +++ Y F+ E + LF+++
Sbjct: 22 NVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVALFQEMQ 81
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+ + DK LV L + CA++ L G +H Y + G+ + +L+ MY+KC ++
Sbjct: 82 IQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSKCGCIE 141
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+ALR+F G R +KD W S++ G
Sbjct: 142 KALRIF--CGLR------------------------------EKDTATWTSIICGLAMNG 169
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVK 255
+ +ALELF KM PDE + VLSACS ++ GR + NI
Sbjct: 170 KTSKALELFSKMKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHY 229
Query: 256 TALIDMYSKCGSLEEA 271
LID+ + G L+EA
Sbjct: 230 GCLIDLLGRAGQLDEA 245
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 66/150 (44%), Gaps = 1/150 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H ++ + + D VG SLI Y + A +F + +D +W +++
Sbjct: 108 GTWIHGYIDEKGIPVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAM 167
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYMLN 120
+ + L LF ++ + D++T + + SAC+ + G+ T + +E L
Sbjct: 168 NGKTSKALELFSKMKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLE 227
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRN 150
L+ + + ++DEA L ++ + N
Sbjct: 228 HYGCLIDLLGRAGQLDEAEELIKKIVNANN 257
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/530 (29%), Positives = 263/530 (49%), Gaps = 69/530 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+ + + D ++ L+ Y + L DA +F ++ DV SW+ +++ +
Sbjct: 349 GQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQ 408
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E +FK++ G++ ++ TL L SA L L+YG+++H K G EY +
Sbjct: 409 KGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTV 468
Query: 122 ENALLLMYAK-------CK------------------------EMDEALRLFDEM---GS 147
NAL+ MY K C+ D LR+F++M G
Sbjct: 469 CNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGF 528
Query: 148 RRN--------------------------IVSLNILINGYIDMELVDL---------ARE 172
N IV ++ N ++ LVD+ A
Sbjct: 529 NPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAET 588
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
+F+ ++ +D+ W ++ G + Q E+A++ F +M EGV P+E + S LS CS ++
Sbjct: 589 IFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIAT 648
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L GR +H ++ + D FV +AL+DMY+KCG +E+A V F +D V+W T+I G
Sbjct: 649 LDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICG 708
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
+ +G G +AL+ F M +G P+E TF+ VL+AC H GLI EG + F + +Y + P
Sbjct: 709 YSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITP 768
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
TIEH+ C+VD+L RAG ++ E FI+ M + ++ +L AC + + G++ A +
Sbjct: 769 TIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKL 828
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+L + Y+LLSN +A +G W +V R M +K+PG S +++
Sbjct: 829 FELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEV 878
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 118/417 (28%), Positives = 193/417 (46%), Gaps = 38/417 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H V K+ ++ D ++ NSL++ Y + A +F ++P RDV SW L++ +
Sbjct: 147 GKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVA 206
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ LF ++ EG+ A++ T AC+ L +GK VH A KVG L +
Sbjct: 207 EGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFV 266
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+AL+ +YAKC EM A R+F M ++N VS
Sbjct: 267 GSALVDLYAKCGEMVLAERVFLCM-PKQNAVS---------------------------- 297
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
W ++++G + E+ L LF +M + + + +VL C++ NL+ G++VH
Sbjct: 298 ---WNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHS 354
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ D F+ L+DMYSKCG +AL F + + DVV+W+ +I L G E
Sbjct: 355 LAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSRE 414
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC-- 359
A VF +M G+ PN+ T S+++A G + G + V + ++ VC
Sbjct: 415 AAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIH---ACVCKYGFEYDNTVCNA 471
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
LV + + G + + D IS+ ALLS D G ++ N M+ G
Sbjct: 472 LVTMYMKIGSVQDGCRVFEATTNRD-LISWNALLSGFHDNETCDTGLRIFNQMLAEG 527
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 32/237 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA + K +LD + +VG +L+ Y + DA +F+++ RD+ +W +++ Y
Sbjct: 550 LGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYA 609
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + F Q+ EG+ ++ TL S C+R+ L G+ +H A K G +
Sbjct: 610 QDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMF 669
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +AL+ MYAKC +++A +FD + S R+ VS N +I GY
Sbjct: 670 VASALVDMYAKCGCVEDAEVVFDGLVS-RDTVSWNTIICGY------------------- 709
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
HG Q +AL+ F+ M+DEG PDE + VLSACS + ++ G+
Sbjct: 710 -------SQHG-----QGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGK 754
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 145/308 (47%), Gaps = 40/308 (12%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ CA L+ GK +H K G+ ++ N+L+ +YAKC + A +
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACK--------- 184
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
VF EI ++D+V W +++ G V A+ LF +M
Sbjct: 185 -----------------------VFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMR 221
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
EGV +E + L ACS +L++G+ VH ++ D FV +AL+D+Y+KCG +
Sbjct: 222 REGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMV 281
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
A F ++ V+W ++ G A G + L +F +M I ++ T +VL C
Sbjct: 282 LAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCA 341
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQA-EEFIKIMPAEDKF 386
+SG + G Q+ + R+ ++ F+ CLVD+ S+ GL A + F++I +
Sbjct: 342 NSGNLRAG-QIVHSL--AIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRI--EDPDV 396
Query: 387 ISYKALLS 394
+S+ A+++
Sbjct: 397 VSWSAIIT 404
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 102/190 (53%), Gaps = 9/190 (4%)
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
+L C+S +L G+ +H ++++ I D+ + +L+++Y+KCGS A F + +D
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
VV+WT +I G G G+ A+ +F +M R+G++ NE T+ + L AC + G Q+
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253
Query: 343 RMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYS 400
+V + FV LVDL ++ G + AE MP ++ +S+ ALL+ ++
Sbjct: 254 E---AIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNA-VSWNALLNG---FA 306
Query: 401 EFDLGKKVAN 410
+ +KV N
Sbjct: 307 QMGDAEKVLN 316
>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
Length = 608
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 153/492 (31%), Positives = 246/492 (50%), Gaps = 64/492 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDV------------ 49
GK +H H L DI+V +L+ FY + A +FD+MP +D
Sbjct: 104 GKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSK 163
Query: 50 -------------------GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
SWN++++ Y + E L LF++++ EG + IT+ +
Sbjct: 164 SGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATM 223
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
FS CA+ L GK + L+ M+ + AL+ MY KC+ +DE
Sbjct: 224 FSICAKTGDLETGKWARSLIAEQDLQNMI-VHTALMEMYVKCQAIDE------------- 269
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
AR FD + +D+V W +M+ G + +P E+LELF++M
Sbjct: 270 -------------------ARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKA 310
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
P+E +V VLSAC+ L + + G + + N+ +++ +ALIDMY+KCG +
Sbjct: 311 TSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGR 370
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F + + K V+TW +M+ GLA G +A+ ++ +M + ++PNE TFV++L AC H
Sbjct: 371 ARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTH 430
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+GL+ +G F+ M ++ V P +EH C+VDLL ++G L +A +FI M E + +
Sbjct: 431 AGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWS 490
Query: 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450
LLSAC +++ +L K A+ ++ L + YVLLSN YA G W +V E R M+
Sbjct: 491 TLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKN 550
Query: 451 TRKKPGNSIIDL 462
+K S I+L
Sbjct: 551 VQKLSAYSWIEL 562
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 161/304 (52%), Gaps = 2/304 (0%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR LFD +P TL+S + E+L F L G + ++ +CA
Sbjct: 38 ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAI 97
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
L GK VHC+A GL + ++ AL+ YAK +MD A+++FDEM ++ + +N
Sbjct: 98 LAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEM-PVKDPIPMNC 156
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
LI GY V AR +FD +V + W SM+ + +EAL LF++M+ EG P+
Sbjct: 157 LITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPN 216
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
+ ++ S C+ +L+ G+ I + ++ Q+ V TAL++MY KC +++EA F
Sbjct: 217 AITIATMFSICAKTGDLETGKWARSLIAEQDL-QNMIVHTALMEMYVKCQAIDEARREFD 275
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
+ +DVV W+TMI G A G +E+L +F +M+ KPNE T V VL+AC G
Sbjct: 276 RMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDEL 335
Query: 337 GCQL 340
G Q+
Sbjct: 336 GGQI 339
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 4/175 (2%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
AR +FD + L +++ + +E L+ F + G + V+ +C+
Sbjct: 38 ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAI 97
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
L+ + G+ VH + + D FV+TAL+D Y+K G ++ A+ F + KD + +
Sbjct: 98 LAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCL 157
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
I G + G +A R+F M R+ A++ S++A H G E +LFRRM
Sbjct: 158 ITGYSKSGDVVKARRLFDGMVRR----TSASWNSMIACYAHGGEYQEALRLFRRM 208
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 24/184 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G + +HV L Y+G++LI Y + AR +F++M + V +WN++M
Sbjct: 335 LGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLA 394
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-------KTVHCYAT 111
N F+ + + L+K++ E + ++IT V L +AC + G KT+H +
Sbjct: 395 LNGFAQ--DAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSP 452
Query: 112 KVGLEYMLNMENALLLMYAKCK--EMDEALRLFDEMGSRRNIVSLNILIN---GYIDMEL 166
+V E+ ++ CK + EA + +M N V + L++ + D+EL
Sbjct: 453 QV--------EHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVEL 504
Query: 167 VDLA 170
LA
Sbjct: 505 AKLA 508
>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330 [Vitis vinifera]
Length = 1008
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 165/495 (33%), Positives = 251/495 (50%), Gaps = 48/495 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GKG+H + + LD D + NS++ +Y + F A LF M +D SWN +MS Y
Sbjct: 406 IGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYL 465
Query: 61 DFSDSGEVLILFKQL-------------------------------IFEGIVADKITLVI 89
D + + LF+QL + G +K+T I
Sbjct: 466 QIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSI 525
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ L L GK +H KVG+ + N+L+ MY KC EM++A +F +
Sbjct: 526 ALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQES 585
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
++++ + E D+ V + V W SM+ G V+ + E+AL+ F MI
Sbjct: 586 SMMN----------------SEESCDDAVVES-VSWSSMVSGYVQNGRFEDALKTFSFMI 628
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
V D+ + SV+SAC+S L+ GR VH +I + D F+ +++IDMY KCGSL
Sbjct: 629 CSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLN 688
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+A + F + ++VV WT+MI G A +G G EA+R+F M +GI PNE +FV VL AC
Sbjct: 689 DAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACS 748
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
H+GL+ EGC+ FR M VY ++P EHF C+VDL RAG L + +EFI +
Sbjct: 749 HAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVW 808
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449
++ LS+C + ++G V +++L Y+L S+ A E W E A+ R M++
Sbjct: 809 RSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQR 868
Query: 450 QTRKKPGNSIIDLKH 464
+K P S I LK+
Sbjct: 869 GVKKNPSQSWIQLKN 883
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 205/400 (51%), Gaps = 25/400 (6%)
Query: 21 GNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGI 80
GN L++ Y + A +F+++P DV SW L+S + S +VL LF ++ +G+
Sbjct: 324 GNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGV 383
Query: 81 VADKITLVILFSACA-RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL 139
++ TL I+ +C+ + GK +H + + GL+ + N++L Y KC+ A
Sbjct: 384 CPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAE 443
Query: 140 RLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
+LF M + ++ VS NI+++ Y+ + + + ++F ++ KD W +M+ G ++
Sbjct: 444 KLFGLM-AEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCER 502
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
ALEL KM+ G ++ L SSLS L G+ +H +L+ + D FV+ +LI
Sbjct: 503 VALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLI 562
Query: 260 DMYSKCGSLEEALVTF-----------YKTDCKDV----VTWTTMIEGLANYGLGNEALR 304
DMY KCG +E+A V F + C D V+W++M+ G G +AL+
Sbjct: 563 DMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALK 622
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVD 362
F M ++ ++ T SV++AC +G++ G Q+ G + ++ ++ F+ ++D
Sbjct: 623 TFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVH---GYIQKIGHGLDVFLGSSIID 679
Query: 363 LLSRAGLLYQAEEFIKIMPAEDK-FISYKALLSACITYSE 401
+ + G L A ++ A+D+ + + +++S C + +
Sbjct: 680 MYVKCGSLNDA--WLIFNQAKDRNVVLWTSMISGCALHGQ 717
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 155/463 (33%), Positives = 245/463 (52%), Gaps = 3/463 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDAR-VLFDKMPFRDVGSWNTLMSIYND 61
K +HA + K+ L D Y + F + + A V F+ D WN ++ +
Sbjct: 28 KQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIRGLSC 87
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L+L+ +++ + T L AC+ L +H + TK G + +
Sbjct: 88 SDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYA 147
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ YA A LFD + + VS N +I GY+ +D+A +F ++ +K+
Sbjct: 148 VNSLINSYAVTGNFKHAHLLFDRI-QEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKN 206
Query: 182 -IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ W +M+ G V+A +EAL+LF +M + V PD + S LSACS L L+ G+ +H
Sbjct: 207 NAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIH 266
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + D+ + LIDMY+KCG +EEAL F K V WT +I G A +GLG
Sbjct: 267 SYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGR 326
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EA+ F +M+ G+KPN TF +VL AC ++GL+ EG +F + Y ++PTIEH+ C+
Sbjct: 327 EAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCM 386
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A FI+ MP + + + +LL AC + +LG+K+ ++++ +
Sbjct: 387 VDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDSNHG 446
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YV ++N +A+ W + AE RR M+E K PG S I L+
Sbjct: 447 GRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLE 489
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 12/234 (5%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H++ KT D + LI Y + +A +F M + V W L+S Y
Sbjct: 262 GKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAY 321
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLN 120
E + F ++ G+ + IT + +AC+ + GK+V + L+ +
Sbjct: 322 HGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIE 381
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAREVFDEI 177
++ + + ++EA R +M + N V L+ + ++EL + E+ E+
Sbjct: 382 HYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEM 441
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
+ M + K+ ++A E + M ++GV + CS++S
Sbjct: 442 DSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVK--------VPGCSAIS 487
>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
Length = 861
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 150/463 (32%), Positives = 256/463 (55%), Gaps = 14/463 (3%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G ++ K++L D+ V N+ I YG+ +A +FD+M RD SWN +++ +
Sbjct: 359 GLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQ 418
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF ++ I D+ T + AC L YG +H K G+ ++
Sbjct: 419 NGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSV 477
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MY+KC ++EA ++ R N+ +G ++ EL + + E+
Sbjct: 478 GCSLIDMYSKCGMIEEAEKIHSRFFQRANV-------SGTME-ELEKMHNKRLQEMC--- 526
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W S++ G V +Q E+A LF +M++ G+TPD+ +VL C++L++ G+ +H
Sbjct: 527 -VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHA 585
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+++ + D ++ + L+DMYSKCG L ++ + F K+ +D VTW MI G A++G G E
Sbjct: 586 QVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEE 645
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+++F +M + IKPN TF+S+L AC H GLI +G + F M Y + P + H+ +V
Sbjct: 646 AIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMV 705
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC-ITYSEFDLGKKVANNMMKLGNQSH 420
D+L ++G + +A E I+ MP E + ++ LL C I + ++ ++ +++L Q
Sbjct: 706 DILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDS 765
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AY LLSN YA G W +V++ RRNM+ + +K+PG S ++LK
Sbjct: 766 SAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELK 808
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 112/430 (26%), Positives = 193/430 (44%), Gaps = 73/430 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK HAH+ + +V N L+ Y F A ++FDKMP RDV SWN +++ Y+
Sbjct: 24 LGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYS 83
Query: 61 DFSD----------------------------SGEVLI---LFKQLIFEGIVADKITLVI 89
+D +GE L +F + EGI D T I
Sbjct: 84 KSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAI 143
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ C+ LE G +H +VG + + +ALL MYAK K E+LR
Sbjct: 144 ILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLR--------- 194
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
VF I +K+ V W +++ GCV+ AL+ FK+M
Sbjct: 195 -----------------------VFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 231
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+ + SVL +C++LS L+ G +H L+++ D V+TA +DMY+KC +++
Sbjct: 232 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 291
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+A + F ++ + ++ MI G + G +AL +F+++ G+ +E + V AC
Sbjct: 292 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 351
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCL----VDLLSRAGLLYQAEEFIKIMPAEDK 385
++EG Q++ ++ ++ VC+ +D+ + L +A M D
Sbjct: 352 LVKGLSEGLQIYG-----LAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDA 406
Query: 386 FISYKALLSA 395
+S+ A+++A
Sbjct: 407 -VSWNAIIAA 415
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA V K L SD+Y+ ++L+ Y + D+R++F+K RD +WN ++ Y
Sbjct: 579 LGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYA 638
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
E + LF+++I E I + +T + + ACA + + G + + GL+ L
Sbjct: 639 HHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQL 698
Query: 120 NMENALLLMYAKCKEMDEALRLFDEM 145
+ ++ + K ++ AL L EM
Sbjct: 699 PHYSNMVDILGKSGKVKRALELIREM 724
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 94/237 (39%), Gaps = 40/237 (16%)
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C+ L+ G+ H ++ + FV L+ +Y+ A + F K +DVV+W
Sbjct: 16 CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSW 75
Query: 287 TTMIEG----------------------------LANYGLGNEALR---VFYQMERKGIK 315
MI G L+ Y E+L+ VF M R+GI+
Sbjct: 76 NKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIE 135
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV--QPTIEHFVCLVDLLSRAGLLYQA 373
+ TF +L C + G Q+ G V RV + L+D+ ++ ++
Sbjct: 136 FDGRTFAIILKVCSFLEDTSLGMQIH---GIVVRVGCDTDVVAASALLDMYAKGKRFVES 192
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG---NQSHEAYVLLS 427
+ +P E +S+ A+++ C+ + L K M K+ +QS A VL S
Sbjct: 193 LRVFQGIP-EKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRS 248
>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 903
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 150/463 (32%), Positives = 256/463 (55%), Gaps = 14/463 (3%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G ++ K++L D+ V N+ I YG+ +A +FD+M RD SWN +++ +
Sbjct: 401 GLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQ 460
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF ++ I D+ T + AC L YG +H K G+ ++
Sbjct: 461 NGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSV 519
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MY+KC ++EA ++ R N+ +G ++ EL + + E+
Sbjct: 520 GCSLIDMYSKCGMIEEAEKIHSRFFQRANV-------SGTME-ELEKMHNKRLQEMC--- 568
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W S++ G V +Q E+A LF +M++ G+TPD+ +VL C++L++ G+ +H
Sbjct: 569 -VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHA 627
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+++ + D ++ + L+DMYSKCG L ++ + F K+ +D VTW MI G A++G G E
Sbjct: 628 QVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEE 687
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+++F +M + IKPN TF+S+L AC H GLI +G + F M Y + P + H+ +V
Sbjct: 688 AIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMV 747
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC-ITYSEFDLGKKVANNMMKLGNQSH 420
D+L ++G + +A E I+ MP E + ++ LL C I + ++ ++ +++L Q
Sbjct: 748 DILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDS 807
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AY LLSN YA G W +V++ RRNM+ + +K+PG S ++LK
Sbjct: 808 SAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELK 850
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 112/430 (26%), Positives = 193/430 (44%), Gaps = 73/430 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK HAH+ + +V N L+ Y F A ++FDKMP RDV SWN +++ Y+
Sbjct: 66 LGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYS 125
Query: 61 DFSD----------------------------SGEVLI---LFKQLIFEGIVADKITLVI 89
+D +GE L +F + EGI D T I
Sbjct: 126 KSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAI 185
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ C+ LE G +H +VG + + +ALL MYAK K E+LR
Sbjct: 186 ILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLR--------- 236
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
VF I +K+ V W +++ GCV+ AL+ FK+M
Sbjct: 237 -----------------------VFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 273
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+ + SVL +C++LS L+ G +H L+++ D V+TA +DMY+KC +++
Sbjct: 274 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 333
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+A + F ++ + ++ MI G + G +AL +F+++ G+ +E + V AC
Sbjct: 334 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 393
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCL----VDLLSRAGLLYQAEEFIKIMPAEDK 385
++EG Q++ ++ ++ VC+ +D+ + L +A M D
Sbjct: 394 LVKGLSEGLQIYG-----LAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDA 448
Query: 386 FISYKALLSA 395
+S+ A+++A
Sbjct: 449 -VSWNAIIAA 457
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA V K L SD+Y+ ++L+ Y + D+R++F+K RD +WN ++ Y
Sbjct: 621 LGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYA 680
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
E + LF+++I E I + +T + + ACA + + G + + GL+ L
Sbjct: 681 HHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQL 740
Query: 120 NMENALLLMYAKCKEMDEALRLFDEM 145
+ ++ + K ++ AL L EM
Sbjct: 741 PHYSNMVDILGKSGKVKRALELIREM 766
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 95/241 (39%), Gaps = 40/241 (16%)
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
V C+ L+ G+ H ++ + FV L+ +Y+ A + F K +D
Sbjct: 54 VFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRD 113
Query: 283 VVTWTTMIEG----------------------------LANYGLGNEALR---VFYQMER 311
VV+W MI G L+ Y E+L+ VF M R
Sbjct: 114 VVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGR 173
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV--QPTIEHFVCLVDLLSRAGL 369
+GI+ + TF +L C + G Q+ G V RV + L+D+ ++
Sbjct: 174 EGIEFDGRTFAIILKVCSFLEDTSLGMQIH---GIVVRVGCDTDVVAASALLDMYAKGKR 230
Query: 370 LYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG---NQSHEAYVLL 426
++ + +P E +S+ A+++ C+ + L K M K+ +QS A VL
Sbjct: 231 FVESLRVFQGIP-EKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 289
Query: 427 S 427
S
Sbjct: 290 S 290
>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
Length = 612
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/466 (33%), Positives = 260/466 (55%), Gaps = 15/466 (3%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + KT + SD+Y+ N LI Y + AR +FD+MP RD S+N+++ Y
Sbjct: 140 GMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVK 199
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLV----ILFSACARLEKLHYGKTVHCYATKVGLEY 117
+I + +F+ + +K L+ ++ R + ++ K + E
Sbjct: 200 CG-----MIESARGLFDLMPKEKKNLISWNFMISGYAQRADGVNVAKKLFDEMP----EK 250
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L N+L+ Y K M++A LF++M +R++V+ +++GY + V A+ +FD +
Sbjct: 251 DLISWNSLIDGYVKHGRMEDAKSLFNKM-PKRDVVTWATMVDGYAKLGFVHQAKSLFDRM 309
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYG 236
+D+V + SM+ G V+ + +EA+ +F M E ++PDE +V VLSA + L L
Sbjct: 310 PLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKA 369
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+H +I+ N + ALID YSKCGS+++++ F + + K + W MI GLA +
Sbjct: 370 VDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIH 429
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
GLG A + Q+E++ IKP++ TF+ VL AC HSGL+ EG F M ++++P ++H
Sbjct: 430 GLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQH 489
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VD+LSR+G + A+ I+ MP E + ++ L+AC + EF+ G+ VA ++ G
Sbjct: 490 YGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQG 549
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ ++VLLSN YA G W EV R MKE + RK PG S I+L
Sbjct: 550 GYNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWIEL 595
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 174/335 (51%), Gaps = 20/335 (5%)
Query: 46 FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT 105
F D WN ++ ++ D + L+LF ++ G+ DK +L ++ AC+RL + G
Sbjct: 83 FEDPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACSRLGFVKEGMQ 142
Query: 106 VHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME 165
+H + K G+ L ++N L+ +Y KC + A ++FD M RR+ VS N +I+GY+
Sbjct: 143 IHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRM-PRRDSVSYNSMIDGYVKCG 201
Query: 166 LVDLAREVFDEIV--DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223
+++ AR +FD + K+++ W M+ G Q + + + KK+ DE P+++++
Sbjct: 202 MIESARGLFDLMPKEKKNLISWNFMISGYA---QRADGVNVAKKLFDE--MPEKDLI--- 253
Query: 224 LSACSSLSN--LQYGRLVHRFILQNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDC 280
+ +SL + +++GR+ L N + + D ++D Y+K G + +A F +
Sbjct: 254 --SWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPL 311
Query: 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQ 339
+DVV + +MI G EA+ +F ME++ + P+E T V VL+A G +++
Sbjct: 312 RDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVD 371
Query: 340 L-FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
+ M +R+ + V L+D S+ G + ++
Sbjct: 372 IHLYIMDNKFRLGGKLG--VALIDTYSKCGSIQKS 404
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 101/225 (44%), Gaps = 12/225 (5%)
Query: 166 LVDLAREVFDEIVD------KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
L + AR VF E +D LW +++ P +AL LF M++ GV+ D+
Sbjct: 64 LAEFARFVFHEYHVCSNGDFEDPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFS 123
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279
+ VL ACS L ++ G +H F+ + I D +++ LI +Y KCG L A F +
Sbjct: 124 LSLVLKACSRLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMP 183
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339
+D V++ +MI+G G+ A +F M ++ F+ A R G + +
Sbjct: 184 RRDSVSYNSMIDGYVKCGMIESARGLFDLMPKEKKNLISWNFMISGYAQRADG-VNVAKK 242
Query: 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
LF M + + + L+D + G + A+ MP D
Sbjct: 243 LFDEM-----PEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRD 282
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338
D +D W +I+ ++ +AL +F M G+ ++ + VL AC G + EG
Sbjct: 82 DFEDPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACSRLGFVKEGM 141
Query: 339 QL--FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
Q+ F R G++ + CL+ L + G L A + MP D +SY +++
Sbjct: 142 QIHGFLRKTGIW---SDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDS-VSYNSMIDGY 197
Query: 397 I 397
+
Sbjct: 198 V 198
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 154/460 (33%), Positives = 243/460 (52%), Gaps = 32/460 (6%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +HA + + +I V N LI+FY DA LFD M RD SW+ ++ +
Sbjct: 79 RQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 138
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
D F++LI G D TL + AC L+ L G+ +H K GL+ +
Sbjct: 139 GDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVC 198
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
AL+ MY KC+E+++A R +FD++ ++D+
Sbjct: 199 AALVDMYVKCREIEDA--------------------------------RFLFDKMQERDL 226
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W M+ G + + E+L LF+KM +EGV PD+ MV+V+ AC+ L + R++ +
Sbjct: 227 VTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDY 286
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
I + D + TA+IDMY+KCG +E A F + + K+V++W+ MI +G G +A
Sbjct: 287 IQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA 346
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F M G+ P++ T S+L AC H+GL+ EG + F M Y V+ ++H+ C+VD
Sbjct: 347 LDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVD 406
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL RAG L +A + IK M E + A L AC T+ + L +K A ++++L +Q+
Sbjct: 407 LLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGH 466
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA G W +VA+ R M + + +K PG + I++
Sbjct: 467 YVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEV 506
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 152/460 (33%), Positives = 238/460 (51%), Gaps = 32/460 (6%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +H + + ++ V N L+ FY DA LFD M RD SW+ ++ +
Sbjct: 755 RQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 814
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
D F++LI G D TL + AC L+ L G+ +H K GL+ +
Sbjct: 815 GDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVC 874
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
AL+ MY KC+E+++A R +FD++ ++D+
Sbjct: 875 AALVDMYGKCREIEDA--------------------------------RFLFDKMXERDL 902
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W M+ G + E+L LF KM +EGV PD+ MV+V+ AC+ L + R + +
Sbjct: 903 VTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDY 962
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
I + D + TA+IDM++KCG +E A F + + K+V++W+ MI +G G +A
Sbjct: 963 IQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA 1022
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F M R GI PN+ T VS+L AC H+GL+ EG + F M Y V+ ++H+ C+VD
Sbjct: 1023 LDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVD 1082
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL RAG L +A + I M E + A L AC T+ + L +K A ++++L Q+
Sbjct: 1083 LLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGH 1142
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y+LLSN YA G W +VA+ R M + + +K PG + I++
Sbjct: 1143 YILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEV 1182
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 136/273 (49%), Gaps = 33/273 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +H V K LD D +V +L+ YG+ DAR LFDKM RD+ +W ++ Y
Sbjct: 854 MGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYA 913
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ ++ E L+LF ++ EG+V DK+ +V + ACA+L +H +T+ Y + + +
Sbjct: 914 ECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVI 973
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ A++ M+AKC ++ A +FD M +N++S + +I Y
Sbjct: 974 LGTAMIDMHAKCGCVESAREIFDRM-EEKNVISWSAMIAAY------------------- 1013
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLV 239
HG Q +AL+LF M+ G+ P++ +VS+L ACS ++ G R
Sbjct: 1014 -------GYHG-----QGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFF 1061
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
++ D T ++D+ + G L+EAL
Sbjct: 1062 SXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEAL 1094
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 133/273 (48%), Gaps = 33/273 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +H V K LD D +V +L+ Y + DAR LFDKM RD+ +W ++ Y
Sbjct: 178 MGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYA 237
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + E L+LF+++ EG+V DK+ +V + ACA+L +H + + Y + + +
Sbjct: 238 ECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVI 297
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ A++ MYAKC ++ A +FD M +N++S + +I Y
Sbjct: 298 LGTAMIDMYAKCGCVESAREIFDRM-EEKNVISWSAMIAAY------------------- 337
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLV 239
HG Q +AL+LF M+ G+ PD+ + S+L ACS ++ G R
Sbjct: 338 -------GYHG-----QGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFF 385
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
++ D T ++D+ + G L+EAL
Sbjct: 386 SSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEAL 418
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
+SA + NL R VH + + ++ V LI YS +L++A F +D
Sbjct: 66 ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 125
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
V+W+ M+ G A G F ++ R G +P+ T V+ ACR + G +L
Sbjct: 126 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG-RLIHH 184
Query: 344 MGGVYRVQPTIEHFVC--LVDL 363
+ VY+ ++HFVC LVD+
Sbjct: 185 I--VYKFGLDLDHFVCAALVDM 204
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 161/499 (32%), Positives = 256/499 (51%), Gaps = 38/499 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H+ V + + +G L+ Y AR +FD +P R+V +N ++ Y +
Sbjct: 52 KNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNN 111
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ L++F+ ++ G D T + AC+ + L G +H KVGL+ L +
Sbjct: 112 HLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVG 171
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI-DMEL---VDLAREV----- 173
N L+ +Y KC + EA + DEM S+ ++VS N ++ GY +M+ +D+ RE+
Sbjct: 172 NGLIALYGKCGCLPEARCVLDEMQSK-DVVSWNSMVAGYAQNMQFDDALDICREMDGVRQ 230
Query: 174 ----------------------------FDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
F + K +V W M+ +K P ++++L+
Sbjct: 231 KPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLY 290
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+M V PD SVL AC LS L GR +H ++ + + + ++ +LIDMY++C
Sbjct: 291 LQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARC 350
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G LE+A F + +DV +WT++I G G A+ +F +M+ G P+ FV++L
Sbjct: 351 GCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAIL 410
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+AC HSGL+ EG F++M Y++ P IEHF CLVDLL R+G + +A IK MP +
Sbjct: 411 SACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPN 470
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
+ ALLS+C YS D+G A+ +++L + YVLLSN YA G WTEV R
Sbjct: 471 ERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSL 530
Query: 446 MKELQTRKKPGNSIIDLKH 464
MK + RK PG S ++L +
Sbjct: 531 MKRRRIRKMPGISNVELNN 549
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 153/365 (41%), Gaps = 69/365 (18%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH V K LD +++VGN LI YG+ +AR + D+M +DV SWN++++ Y
Sbjct: 151 IGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYA 210
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL--EKLHYGKTVHCYATK---VGL 115
+ L + +++ D T+ L A E + Y + + K V
Sbjct: 211 QNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSW 270
Query: 116 EYMLN--MENA-------LLLMYAKCKEMDEAL------------------RLFDEMGSR 148
M++ M+N+ L L KC+ +A+ R E R
Sbjct: 271 NVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVER 330
Query: 149 RNIVSLNILINGYIDM----ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
+ + +L N IDM ++ A+ VFD + +D+ W S++ Q A+ L
Sbjct: 331 KKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVAL 390
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
F +M + G +PD V++LSACS L G+ + + D + T +I+ ++
Sbjct: 391 FTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQM------TDDYKITPIIEHFA- 443
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
+++ L G +EA + QM +KPNE + ++
Sbjct: 444 -----------------------CLVDLLGRSGRVDEAYNIIKQMP---MKPNERVWGAL 477
Query: 325 LAACR 329
L++CR
Sbjct: 478 LSSCR 482
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/463 (30%), Positives = 249/463 (53%), Gaps = 32/463 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + + +D D+Y GN+L++ Y ++ R +F+ MP +DV S+NT+++ Y
Sbjct: 124 GESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQ 183
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L + +++ + D TL + + + GK +H Y + G++ + +
Sbjct: 184 SGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYI 243
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
++L+ MYAK ++++ R VF + +D
Sbjct: 244 GSSLVDMYAKSARIEDSER--------------------------------VFSHLYRRD 271
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W S++ G V+ + EAL LF++M+ V P SV+ AC+ L+ L G+ +H
Sbjct: 272 SISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHG 331
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++L+ ++ F+ +AL+DMYSKCG+++ A F + + D V+WT +I G A +G G+E
Sbjct: 332 YVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHE 391
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ +F +M+R+G+KPN+ FV+VL AC H GL+ E F M VY + +EH+ +
Sbjct: 392 AVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVA 451
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +A +FI M E + LLS+C + +L +KVA + + +++
Sbjct: 452 DLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMG 511
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
AYVL+ N YA G W E+A+ R +++ RKKP S I++K+
Sbjct: 512 AYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKN 554
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 92/174 (52%)
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
S +I+I+ Y +++L+ A VF + ++ W+S++ AL F +M
Sbjct: 40 TSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRAS 99
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
G PD V SVL +C+ + +L++G VH FI++ + D + AL++MYSK ++
Sbjct: 100 GRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSV 159
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
F KDVV++ T+I G A G+ +ALR+ +M +KP+ T SVL
Sbjct: 160 RKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVL 213
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 1/146 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH +V + +I++ ++L+ Y + AR +FD+M D SW ++ +
Sbjct: 325 LGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHA 384
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
E + LF+++ +G+ +++ V + +AC+ + + TKV GL L
Sbjct: 385 LHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQEL 444
Query: 120 NMENALLLMYAKCKEMDEALRLFDEM 145
A+ + + +++EA +M
Sbjct: 445 EHYAAVADLLGRAGKLEEAYDFISKM 470
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 249/459 (54%), Gaps = 34/459 (7%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HA + K L+S + +SLI Y + AR +F+ +P RDV SWN +M Y +
Sbjct: 151 HALLEKIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMN 210
Query: 66 GEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
GEV + + ++ +G +V + +TL ++ +AC L G+ V ++ G+E + +A
Sbjct: 211 GEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSA 270
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MY KC E+ EA R+FD I+DKD+V
Sbjct: 271 LVGMYEKCGEIAEARRVFD--------------------------------SIIDKDVVA 298
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ G + EA+ LF M GV PD+ + VLSACS++ L+ G + +
Sbjct: 299 WNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYAS 358
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ + +V TAL+DMY+KCG L++A+ F K CK+V +W +I GLA G G+EA++
Sbjct: 359 CRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQ 418
Query: 305 VFYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
F M + G+KP++ TF+ VL+AC H+GL+ +G + F + +++ P IEH+ C+VDL
Sbjct: 419 HFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEHYSCMVDL 478
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L+R+G L + +FI+ +P + + ALL+AC ++G++V N +++L + Y
Sbjct: 479 LARSGHLEEVWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPTNSWNY 538
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
V+ S YA G + A+ R M+E K PG S +++
Sbjct: 539 VVSSKIYASSGRLDDSAKMRGPMRERGVNKTPGCSWVEI 577
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 128/272 (47%), Gaps = 34/272 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + +++D VG++L+ Y + +AR +FD + +DV +WN +++ Y
Sbjct: 248 LGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYA 307
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E + LF + G+ DKITL + SAC+ + L G + YA+ GL +
Sbjct: 308 QNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVY 367
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAKC ++D+A+ +F +M K
Sbjct: 368 VGTALVDMYAKCGDLDKAIEVFRKMRC--------------------------------K 395
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYG-RL 238
++ W +++ G Q +EA++ F+ M +E G+ PD+ + VLSAC ++ G R
Sbjct: 396 NVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRW 455
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
+ + I + ++D+ ++ G LEE
Sbjct: 456 FNSLTSEFQIIPKIEHYSCMVDLLARSGHLEE 487
>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
Length = 787
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 146/447 (32%), Positives = 244/447 (54%), Gaps = 33/447 (7%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D++V +SL+H Y R DA +F +MP RD +W+T+++ + + + +++++
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+G+ D++ ++ + AC + G +VH + + G+ + +L+ MYAK
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAK----- 256
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
NG L+D+A VF +V ++ V W +M+ G +
Sbjct: 257 ----------------------NG-----LLDVACRVFGLMVHRNDVSWSAMISGFAQNG 289
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
Q +EAL LF+ M G+ PD +VS L ACS++ L+ GR VH FI++ + + T
Sbjct: 290 QSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGT 348
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
A IDMYSKCGSL A + F +D++ W MI +G G +AL +F +M G++P
Sbjct: 349 AAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRP 408
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
+ ATF S+L+A HSGL+ EG F RM +++ P +H+VCLVDLL+R+GL+ +A +
Sbjct: 409 DHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDL 468
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436
+ M AE + ALLS C+ + +LG+ +A+N+++L L+SN YA W
Sbjct: 469 LTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKW 528
Query: 437 TEVAEARRNMKELQTRKKPGNSIIDLK 463
+V + R+ MK+ ++K PG S I+++
Sbjct: 529 DKVRQVRKLMKDSGSKKMPGCSSIEIR 555
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 156/316 (49%), Gaps = 39/316 (12%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D T + SACARL L G++V A G + + + ++LL +YA+ M +A+++F
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVF 166
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
M R D V W +M+ G V A QP +A+
Sbjct: 167 VRMPRR--------------------------------DRVTWSTMVAGFVSAGQPLDAI 194
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
+++++M ++GV DE VM+ V+ AC++ N++ G VH +L++ + D T+L+DMY
Sbjct: 195 QMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMY 254
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
+K G L+ A F ++ V+W+ MI G A G +EALR+F M+ GI+P+ V
Sbjct: 255 AKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALV 314
Query: 323 SVLAACRHSGLITEGCQLFRRMGG--VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
S L AC + G + +L R + G V R +D+ S+ G L A+ ++
Sbjct: 315 SALLACSNIGFL----KLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMI 370
Query: 381 PAEDKFISYKALLSAC 396
D I + A+++ C
Sbjct: 371 SDRD-LILWNAMIACC 385
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 135/302 (44%), Gaps = 45/302 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG +H H+ + + D+ SL+ Y + L A +F M R+ SW+ ++S +
Sbjct: 227 MGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFA 286
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E L LF+ + GI D LV AC+ + L G++VH + + ++
Sbjct: 287 QNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCI 345
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ A + MY+KC + A LF N++S D+
Sbjct: 346 LGTAAIDMYSKCGSLASAQMLF-------NMIS-------------------------DR 373
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL-----SNLQY 235
D++LW +M+ C + ++AL LF++M + G+ PD S+LSA S L +
Sbjct: 374 DLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWF 433
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGL 293
GR+V+ F IT L+D+ ++ G +EEA L+T K + V W ++ G
Sbjct: 434 GRMVNHF----KITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAE-PTVAIWVALLSGC 488
Query: 294 AN 295
N
Sbjct: 489 LN 490
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 8/237 (3%)
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
P AL +F+ + PD LSAC+ L +L+ G V D FV +
Sbjct: 89 SPASALRVFRAL-PPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCS 147
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
+L+ +Y++ G++ +A+ F + +D VTW+TM+ G + G +A++++ +M G+K
Sbjct: 148 SLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKG 207
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYR--VQPTIEHFVCLVDLLSRAGLLYQAE 374
+E + V+ AC + + G + G + R ++ + LVD+ ++ GLL A
Sbjct: 208 DEVVMIGVIQACTAARNVRMGASVH---GHLLRHGMRMDVVTATSLVDMYAKNGLLDVAC 264
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431
+M + +S+ A++S + D ++ NM G Q ++ L+S A
Sbjct: 265 RVFGLMVHRND-VSWSAMISGFAQNGQSDEALRLFRNMQASGIQP-DSGALVSALLA 319
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 146/464 (31%), Positives = 246/464 (53%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ KT +SD+YV LI Y + AR + + + +DV SW ++++ Y
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYV 422
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L FK++ GI D I L S CA + + G +H G ++
Sbjct: 423 QHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVS 482
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ +YA+C + EA F+EI K
Sbjct: 483 IWNALVNLYARCGRIREAF--------------------------------SSFEEIEHK 510
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D + W ++ G ++ EEAL++F +M GV + VS LSA ++L+ ++ G+ +H
Sbjct: 511 DEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIH 570
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + + V ALI +Y KCGS E+A + F + ++ V+W T+I + +G G
Sbjct: 571 ARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGL 630
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F QM+++GIKPN+ TF+ VLAAC H GL+ EG F+ M Y ++P +H+ C+
Sbjct: 631 EALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACV 690
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+D+ RAG L +A++FI+ MP + ++ LLSAC + ++G+ A ++++L
Sbjct: 691 IDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDS 750
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+YVLLSN YA+ W + R+ M++ RK+PG S I++K+
Sbjct: 751 ASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKN 794
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 129/467 (27%), Positives = 221/467 (47%), Gaps = 77/467 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA K S+I+VGN++I Y R F A +F MP RD ++NTL+S +
Sbjct: 162 GRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQ 221
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L +F+++ F G+ D +T+ L +ACA L L G +H Y K G+ M
Sbjct: 222 CGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIM 281
Query: 122 E-------------------------------NALLLMYAKCKEMDEALRLFDEM---GS 147
E N +L+ + + ++ ++ LF +M G
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341
Query: 148 RRN----------------------IVSLNI-------------LINGYIDMELVDLARE 172
R N I SL++ LI+ Y ++ AR
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARR 401
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
V + + +KD+V W SM+ G V+ + ++AL FK+M G+ PD + S +S C+ ++
Sbjct: 402 VLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA 461
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
++ G +H I + + D + AL+++Y++CG + EA +F + + KD +TW ++ G
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSG 521
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
A GL EAL+VF +M++ G+K N TFVS L+A + I +G Q+ R V +
Sbjct: 522 FAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHAR---VIKTGH 578
Query: 353 TIEHFV--CLVDLLSRAGLLYQAE-EFIKIMPAEDKFISYKALLSAC 396
+ E V L+ L + G A+ EF ++ +E +S+ ++++C
Sbjct: 579 SFETEVGNALISLYGKCGSFEDAKMEFSEM--SERNEVSWNTIITSC 623
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 191/399 (47%), Gaps = 42/399 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA L VGN LI Y + L AR +F+++ RD SW ++S Y
Sbjct: 64 IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E L L++Q+ G+V L + S+C + E G+ +H K G + + NA
Sbjct: 124 GEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNA 183
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
++ +Y +C A R+F +M R+ V+ N LI+G+
Sbjct: 184 VITLYLRCGSFRLAERVFCDM-PHRDTVTFNTLISGHAQCG------------------- 223
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
HG E ALE+F++M G++PD + S+L+AC+SL +LQ G +H ++
Sbjct: 224 -----HG-------EHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF 271
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ I+ D ++ +L+D+Y KCG +E ALV F +D +VV W M+ ++
Sbjct: 272 KAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFE 331
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CL 360
+F QM+ GI+PN+ T+ +L C + I G Q+ V+ E + L
Sbjct: 332 LFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHS-----LSVKTGFESDMYVSGVL 386
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
+D+ S+ G L +A ++++ +D +S+ ++++ + +
Sbjct: 387 IDMYSKYGWLEKARRVLEMLKEKD-VVSWTSMIAGYVQH 424
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 146/464 (31%), Positives = 246/464 (53%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ KT +SD+YV LI Y + AR + + + +DV SW ++++ Y
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYV 422
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L FK++ GI D I L S CA + + G +H G ++
Sbjct: 423 QHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVS 482
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ +YA+C + EA F+EI K
Sbjct: 483 IWNALVNLYARCGRIREAF--------------------------------SSFEEIEHK 510
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D + W ++ G ++ EEAL++F +M GV + VS LSA ++L+ ++ G+ +H
Sbjct: 511 DEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIH 570
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + + V ALI +Y KCGS E+A + F + ++ V+W T+I + +G G
Sbjct: 571 ARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGL 630
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F QM+++GIKPN+ TF+ VLAAC H GL+ EG F+ M Y ++P +H+ C+
Sbjct: 631 EALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACV 690
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+D+ RAG L +A++FI+ MP + ++ LLSAC + ++G+ A ++++L
Sbjct: 691 IDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDS 750
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+YVLLSN YA+ W + R+ M++ RK+PG S I++K+
Sbjct: 751 ASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKN 794
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 129/467 (27%), Positives = 221/467 (47%), Gaps = 77/467 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA K S+I+VGN++I Y R F A +F MP RD ++NTL+S +
Sbjct: 162 GRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQ 221
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L +F+++ F G+ D +T+ L +ACA L L G +H Y K G+ M
Sbjct: 222 CGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIM 281
Query: 122 E-------------------------------NALLLMYAKCKEMDEALRLFDEM---GS 147
E N +L+ + + ++ ++ LF +M G
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341
Query: 148 RRN----------------------IVSLNI-------------LINGYIDMELVDLARE 172
R N I SL++ LI+ Y ++ AR
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARR 401
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
V + + +KD+V W SM+ G V+ + ++AL FK+M G+ PD + S +S C+ ++
Sbjct: 402 VLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA 461
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
++ G +H I + + D + AL+++Y++CG + EA +F + + KD +TW ++ G
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSG 521
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
A GL EAL+VF +M++ G+K N TFVS L+A + I +G Q+ R V +
Sbjct: 522 FAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHAR---VIKTGH 578
Query: 353 TIEHFV--CLVDLLSRAGLLYQAE-EFIKIMPAEDKFISYKALLSAC 396
+ E V L+ L + G A+ EF ++ +E +S+ ++++C
Sbjct: 579 SFETEVGNALISLYGKCGSFEDAKMEFSEM--SERNEVSWNTIITSC 623
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 191/399 (47%), Gaps = 42/399 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA L VGN LI Y + L AR +F+++ RD SW ++S Y
Sbjct: 64 IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E L L++Q+ G+V L + S+C + E G+ +H K G + + NA
Sbjct: 124 GEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNA 183
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
++ +Y +C A R+F +M R+ V+ N LI+G+
Sbjct: 184 VITLYLRCGSFRLAERVFCDM-PHRDTVTFNTLISGHAQCG------------------- 223
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
HG E ALE+F++M G++PD + S+L+AC+SL +LQ G +H ++
Sbjct: 224 -----HG-------EHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF 271
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ I+ D ++ +L+D+Y KCG +E ALV F +D +VV W M+ ++
Sbjct: 272 KAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFE 331
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CL 360
+F QM+ GI+PN+ T+ +L C + I G Q+ V+ E + L
Sbjct: 332 LFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHS-----LSVKTGFESDMYVSGVL 386
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
+D+ S+ G L +A ++++ +D +S+ ++++ + +
Sbjct: 387 IDMYSKYGWLEKARRVLEMLKEKD-VVSWTSMIAGYVQH 424
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 167/465 (35%), Positives = 252/465 (54%), Gaps = 19/465 (4%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVL---FDKMP-FRDVGSWNTLMS 57
G +HA + L D++V N+L+ Y A F D R + FD D+ +WNT++
Sbjct: 98 GAQVHAQAVRRGLLVDVFVVNTLLAMY---AAFRDTRSMREVFDSCAGVADLVTWNTMLG 154
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y + GE +F+Q+ + ++ + A A +L + + +G
Sbjct: 155 GYVKCGEIGEARRVFEQMPQR----NGVSWSAMVGAYAGAGELDVAREMFDEMPAIGRNV 210
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY-IDMELVDLAREVFDE 176
+ N+++ +A+ + A ++FDEM RN+VS N ++ GY ++ E+ D ARE+FD
Sbjct: 211 V--SWNSMITGFARHGLLPLARKMFDEM-PVRNLVSWNTMVRGYAVNGEMND-ARELFDR 266
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQY 235
+ +KD+V W M+ G +A+ E LELF+ M E V P+E MVSVLSAC+ L+ L+
Sbjct: 267 MPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEE 326
Query: 236 GRLVHRFILQNNITQDA--FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
GR H FI ++ + D+ + ALIDMYSKCG + A+ F+ D K+V W +I GL
Sbjct: 327 GRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGL 386
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A G ++ VF QM R G KPN TFV VL AC H GL+ EG + F+ M VQP
Sbjct: 387 AVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPE 446
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
+H+ C+VD+L RAGLL +AEE I+ MP + ALL AC + D+ +V N ++
Sbjct: 447 AKHYGCMVDMLGRAGLLEEAEELIRSMPMVPDVMILGALLGACRMHKRVDVAARVQNEIL 506
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNS 458
L Q +VL+S+ YA G W + AR +++ K G+S
Sbjct: 507 GLSTQQSGCHVLISDIYAAAGKWADALYARGVLQKFGISKLRGSS 551
>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
Length = 606
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 255/462 (55%), Gaps = 7/462 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + KT L SD+++ N LI Y + AR +FD+MP RD S+N+++ N
Sbjct: 133 GMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMI---NG 189
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ G LI + +F+ + + L+ S + + G + E L
Sbjct: 190 YVKCG--LIESARELFDLMPREMKNLISWNSMISGYAQTSEGVNIASKLFAEMPEKDLIS 247
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+++ Y K +++A LFD M RR++V+ +I+GY + V A+ +FD++ +D
Sbjct: 248 WNSMIDGYVKHGRIEDAKGLFDVM-PRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRD 306
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V + SMM G V+ K EALE+F M E ++PDE +V +LSA + L L +H
Sbjct: 307 VVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMH 366
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I++ + ALIDMYSKCGS++ A++ F + K + W MI GLA +GLG
Sbjct: 367 LYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGE 426
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A + Q+ER I P++ TFV VL AC HSGL+ EG F M ++++P ++H+ C+
Sbjct: 427 SAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 486
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+LSR+G + A+ I+ MP E + ++ L+AC + EF+ G+ VA +++ +
Sbjct: 487 VDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNP 546
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+YVLLSN YA G W +V R MKE + K PG S I+L
Sbjct: 547 SSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIEL 588
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 171/342 (50%), Gaps = 24/342 (7%)
Query: 41 FDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKL 100
F D WN ++ ++ D + L+LF ++ G+ DK +L ++ AC+RL +
Sbjct: 71 FSPGEMEDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLGFV 130
Query: 101 HYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
G +H + K GL L ++N L+ +Y KC + A ++FD M +R+ VS N +ING
Sbjct: 131 KGGMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRM-PQRDSVSYNSMING 189
Query: 161 YIDMELVDLAREVFDEIVD--KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE 218
Y+ L++ ARE+FD + K+++ W SM+ G Q E + + K+ E P+++
Sbjct: 190 YVKCGLIESARELFDLMPREMKNLISWNSMISG---YAQTSEGVNIASKLFAE--MPEKD 244
Query: 219 VMVSVLSACSSLSN-LQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
++S S + +++GR+ + + +D +ID Y+K G + +A F
Sbjct: 245 ----LISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFD 300
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLIT 335
+ +DVV + +M+ G EAL +F ME++ + P+E T V +L+A G ++
Sbjct: 301 QMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLS 360
Query: 336 EGCQLFRRMGGVYRVQPTI----EHFVCLVDLLSRAGLLYQA 373
+ + +Y V+ + V L+D+ S+ G + A
Sbjct: 361 KATDMH-----LYIVEKQFYLGGKLGVALIDMYSKCGSIQHA 397
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 86/187 (45%), Gaps = 18/187 (9%)
Query: 221 VSVLSACSSLSNLQ--YGRLVHRFILQN-NITQD-----AFVKTALIDMYSKCGSLEEAL 272
+ VL +C + ++ +G L+ I++N N+T A + + +++C E +
Sbjct: 9 IQVLGSCKTSYDVNKIHGGLIKTGIIKNSNLTTRIVLAFAASRRPYLAEFARCVFHEYHV 68
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
+F + +D W +I+ ++ +AL +F M G+ ++ + VL AC G
Sbjct: 69 CSFSPGEMEDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLG 128
Query: 333 LITEGCQL--FRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
+ G Q+ F R G++ + F+ CL+ L + G L A + MP D +S
Sbjct: 129 FVKGGMQIHGFLRKTGLWS-----DLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDS-VS 182
Query: 389 YKALLSA 395
Y ++++
Sbjct: 183 YNSMING 189
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 150/465 (32%), Positives = 246/465 (52%), Gaps = 36/465 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFY---GRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
K + A+ KT ++ V LI+F +A A +FDK+P D+ +NT+ Y
Sbjct: 52 KQIQAYTIKTHQNNPT-VLTKLINFCTSNPTIASMDHAHRMFDKIPQPDIVLFNTMARGY 110
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
F D ++L Q++ G++ D T L ACARL+ L GK +HC A K+G+ +
Sbjct: 111 ARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNM 170
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ L+ MY C + VD AR VFD+I +
Sbjct: 171 YVCPTLINMYTACND--------------------------------VDAARRVFDKIGE 198
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+V + +++ C + +P EAL LF+++ + G+ P + M+ LS+C+ L L GR +
Sbjct: 199 PCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWI 258
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ +N Q V TALIDMY+KCGSL++A+ F +D W+ MI A +G G
Sbjct: 259 HEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHG 318
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
++A+ + +M++ ++P+E TF+ +L AC H+GL+ EG + F M Y + P+I+H+ C
Sbjct: 319 SQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGC 378
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
++DLL RAG L +A +FI +P + I ++ LLS+C ++ ++ K V + +L +
Sbjct: 379 MIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSH 438
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YV+LSN A G W +V R+ M + K PG S I++ +
Sbjct: 439 GGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNN 483
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 140/308 (45%), Gaps = 15/308 (4%)
Query: 123 NALLLMYAKCKEMDE--ALRLFDEMGSRRNIVSLNILIN---GYIDMELVDLAREVFDEI 177
+++L + KC + E ++ + + N L LIN + +D A +FD+I
Sbjct: 36 SSILSLIPKCTSLRELKQIQAYTIKTHQNNPTVLTKLINFCTSNPTIASMDHAHRMFDKI 95
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
DIVL+ +M G + P A+ L +++ G+ PD+ S+L AC+ L L+ G+
Sbjct: 96 PQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGK 155
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H ++ + + +V LI+MY+ C ++ A F K VV + +I A
Sbjct: 156 QLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNS 215
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
NEAL +F +++ G+KP + T + L++C G + G R Y + + +
Sbjct: 216 RPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLG-----RWIHEYVKKNGFDQY 270
Query: 358 V----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
V L+D+ ++ G L A K MP D ++ A++ A T+ + M
Sbjct: 271 VKVNTALIDMYAKCGSLDDAVSVFKDMPRRDT-QAWSAMIVAYATHGHGSQAISMLREMK 329
Query: 414 KLGNQSHE 421
K Q E
Sbjct: 330 KAKVQPDE 337
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 127/298 (42%), Gaps = 34/298 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH K + ++YV +LI+ Y AR +FDK+ V ++N +++
Sbjct: 154 GKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCAR 213
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E L LF++L G+ +T+++ S+CA L L G+ +H Y K G + + +
Sbjct: 214 NSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKV 273
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYAKC +D+A+ +F +M R D
Sbjct: 274 NTALIDMYAKCGSLDDAVSVFKDMPRR--------------------------------D 301
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVH 240
W +M+ +A+ + ++M V PDE + +L ACS ++ G H
Sbjct: 302 TQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFH 361
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV-VTWTTMIEGLANYG 297
+ I +ID+ + G LEEA + K + W T++ +++G
Sbjct: 362 SMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHG 419
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/249 (19%), Positives = 106/249 (42%), Gaps = 21/249 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H +V K D + V +LI Y + DA +F MP RD +W+ ++ Y
Sbjct: 254 LGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYA 313
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
+ + + +++ + D+IT + + AC+ + G + H + G+ +
Sbjct: 314 THGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSI 373
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ + + ++EA + DE+ + + L++ V++A+ V I +
Sbjct: 374 KHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFE 433
Query: 180 ------KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
D V+ ++ C + + ++ L K M+D+G + CSS +
Sbjct: 434 LDDSHGGDYVILSNL---CARNGRWDDVNHLRKMMVDKGALK--------VPGCSS---I 479
Query: 234 QYGRLVHRF 242
+ +VH F
Sbjct: 480 EVNNVVHEF 488
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 152/484 (31%), Positives = 251/484 (51%), Gaps = 31/484 (6%)
Query: 11 KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLI 70
KT D ++ N I ++ A F + +V +N L+ S + L+
Sbjct: 3 KTNTTQDCFLVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALV 62
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
+ ++ ++ + L AC L +G+ VH + K G + + ++ L+ Y+
Sbjct: 63 HYMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYS 122
Query: 131 KCKEMDEALRLFDEMGSR------------------------------RNIVSLNILING 160
++ + R+FD+M R +N+ + N +I+G
Sbjct: 123 TFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDG 182
Query: 161 YIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVM 220
Y + + A +F+++ +DI+ W +MM+ + K+ +E + LF +ID+G+ PDE M
Sbjct: 183 YGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTM 242
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC 280
+V+SAC+ L L G+ VH +++ D ++ ++LIDMY+KCGS++ AL+ FYK
Sbjct: 243 TTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQT 302
Query: 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
K++ W +I+GLA +G EALR+F +MERK I+PN TF+S+L AC H+G I EG +
Sbjct: 303 KNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRW 362
Query: 341 FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYS 400
F M Y + P +EH+ C+VDLLS+AGLL A E I+ M E + ALL+ C +
Sbjct: 363 FMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHK 422
Query: 401 EFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK-PGNSI 459
++ N+M L + Y LL N YA E W EVA+ R MK+L K+ PG+S
Sbjct: 423 NLEIAHIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSSW 482
Query: 460 IDLK 463
+++
Sbjct: 483 VEIN 486
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 136/334 (40%), Gaps = 95/334 (28%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ +H HV K DS ++V +LI FY +R +FD MP RDV +W T++S +
Sbjct: 95 GEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVR 154
Query: 60 -NDFSDSGEVL----------------------------ILFKQL--------------- 75
D + +G + LF Q+
Sbjct: 155 DGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCY 214
Query: 76 ----------------IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
I +G++ D++T+ + SACA L L GK VH Y G + +
Sbjct: 215 SRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDV 274
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ ++L+ MYAKC G IDM L+ VF ++
Sbjct: 275 YIGSSLIDMYAKC---------------------------GSIDMALL-----VFYKLQT 302
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K++ W ++ G EEAL +F +M + + P+ +S+L+AC+ ++ GR
Sbjct: 303 KNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRW 362
Query: 240 HRFILQNN-ITQDAFVKTALIDMYSKCGSLEEAL 272
++Q+ I ++D+ SK G LE+AL
Sbjct: 363 FMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDAL 396
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 9/165 (5%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H ++ D D+Y+G+SLI Y + A ++F K+ +++ WN ++
Sbjct: 257 LGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLA 316
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK-----TVHCYATKVGL 115
E L +F ++ + I + +T + + +AC + G+ V Y +
Sbjct: 317 THGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQV 376
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
E+ M + L +K +++AL + M N L+NG
Sbjct: 377 EHYGCMVDLL----SKAGLLEDALEMIRNMTVEPNSFIWGALLNG 417
>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 877
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 153/463 (33%), Positives = 245/463 (52%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + K DSD Y+ L+ Y + L DA+ +FD +P RD+ WN L+S +
Sbjct: 321 LGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCS 380
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L LF ++ EG ++ TL + + A LE + + VH A K+G +
Sbjct: 381 HGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSH 440
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N L+ Y KC ++ A R VF++
Sbjct: 441 VVNGLIDSYWKCDCLNYAYR--------------------------------VFEKHGSY 468
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DI+ + SM+ + E+A++LF +M+ +G+ PD V+ S+L+AC+SLS + G+ VH
Sbjct: 469 DIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVH 528
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ D F AL+ Y+KCGS+E+A + F K VV+W+ MI GLA +G G
Sbjct: 529 AHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGK 588
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL VF++M + I PN T SVL AC H+GL+ E + F M ++ ++ T EH+ C+
Sbjct: 589 RALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACM 648
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLL RAG L A E + MP + + ALL+A + + +LG+ A + L +
Sbjct: 649 IDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKS 708
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLL+N YA G W +VA+ R+ MK+ + +K+P S ++LK
Sbjct: 709 GTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELK 751
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 187/398 (46%), Gaps = 44/398 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HAH+ K+ L + N L+ FY + L AR +FD++P SW++L++ Y++
Sbjct: 23 GAHIHAHLLKSGLFA--VFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSN 80
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + L F+ + + ++ L ++ CA +G +H A GL + +
Sbjct: 81 NAMPRDALGAFRSMRSCSVRCNEFVLPVVLK-CA--PDAGFGTQLHALAMATGLGGDIFV 137
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI-VDK 180
NAL+ MY VD AR VFDE ++
Sbjct: 138 ANALVAMYGG--------------------------------FGFVDEARMVFDEAGCER 165
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ V W +M VK + A+++F +M+ GV P+E V++AC+ +L+ GR VH
Sbjct: 166 NTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVH 225
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ +D F AL+DMYSK G + A V F K DVV+W I G +G
Sbjct: 226 AMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQ 285
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC- 359
AL + QM+ G+ PN T S+L AC SG G Q+ G + + ++++
Sbjct: 286 HALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIH---GFMVKANADSDNYIAF 342
Query: 360 -LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
LVD+ ++ GLL A++ +P D + + AL+S C
Sbjct: 343 GLVDMYAKHGLLDDAKKVFDWIPQRD-LVLWNALISGC 379
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 115/451 (25%), Positives = 197/451 (43%), Gaps = 74/451 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLMSIYN 60
G LHA T L DI+V N+L+ YG +AR++FD+ R+ SWN LMS Y
Sbjct: 119 GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYV 178
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ +F ++++ G+ ++ + +AC L G+ VH + G + +
Sbjct: 179 KNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVF 238
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
NAL+ MY+K + + +A VF ++ +
Sbjct: 239 TANALVDMYSKLGD--------------------------------IRMAAVVFGKVPET 266
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W + + GCV + ALEL +M G+ P+ + S+L AC+ GR +H
Sbjct: 267 DVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIH 326
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
F+++ N D ++ L+DMY+K G L++A F +D+V W +I G ++
Sbjct: 327 GFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHA 386
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ---LFRRMGGV---------- 347
EAL +F +M ++G N T +VL + I++ Q L ++G +
Sbjct: 387 EALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLI 446
Query: 348 ------------YRV-----QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-------E 383
YRV I F ++ LS+ E+ IK+
Sbjct: 447 DSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCD---HGEDAIKLFMEMLRKGLDP 503
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMK 414
D F+ +LL+AC + S ++ GK+V +++K
Sbjct: 504 DPFV-LSSLLNACASLSAYEQGKQVHAHLIK 533
>gi|125524780|gb|EAY72894.1| hypothetical protein OsI_00769 [Oryza sativa Indica Group]
Length = 569
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 157/503 (31%), Positives = 252/503 (50%), Gaps = 46/503 (9%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP-FRDVGSWNTLMSIYNDFS 63
+HAH L + V ++ Y R+ DAR +FD MP R WN L+S Y+
Sbjct: 30 VHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSSGC 89
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEK------------------------ 99
D F ++ G D +T L SA AR K
Sbjct: 90 DPDAARDAFARMAAAGTRPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMA 149
Query: 100 -------------LHYGKTVH-CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
L GK +H C K + L + N+L+ MY K EMD+A + F +
Sbjct: 150 VALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRD- 208
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEI------VDKDIVLWRSMMHGCVKAKQPE 199
+ +N V+ N LI Y L D A +V ++ V ++V W +++ G + +
Sbjct: 209 ATAKNTVTWNTLITSYAAAGLCDEALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTD 268
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
ALELF++M + ++P+ M +VLSAC L L+ GR +H ++ + + + V+ LI
Sbjct: 269 RALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLI 328
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
+MY+KCG + A F +D+++W +M+ G +GL +EAL +F M ++P+
Sbjct: 329 NMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGV 388
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
TFV+VL+AC H+G +TEG +LF RM +++ P++EH+ C+V LL RAGLL A E ++
Sbjct: 389 TFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVET 448
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
MP + ALL++C + + + + N+++ +QS ++L++N YA+ G W E
Sbjct: 449 MPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMCGMWDES 508
Query: 440 AEARRNMKELQTRKKPGNSIIDL 462
+ R KE RK PG S I++
Sbjct: 509 KKVRVMTKEAGLRKNPGQSWIEV 531
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 131/309 (42%), Gaps = 71/309 (22%)
Query: 2 GKGLHA-HVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
GK +H V K + ++V NSLI YG++ DA+ F ++ +WNTL++ Y
Sbjct: 166 GKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYA 225
Query: 60 ---------------------------------NDFSDSGE---VLILFKQLIFEGIVAD 83
F+ SG+ L LF+++ + + +
Sbjct: 226 AAGLCDEALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPN 285
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
+T+ + SAC L L G+ +H +A K L+ +EN L+ MYAKC ++ A ++FD
Sbjct: 286 VVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFD 345
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
M + R+++S N ++ GY MHG +EAL
Sbjct: 346 GMKT-RDLISWNSMLAGY--------------------------GMHGLC-----DEALA 373
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMY 262
LF M V PD V+VLSAC + G RL R + + I+ T ++ +
Sbjct: 374 LFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLL 433
Query: 263 SKCGSLEEA 271
+ G L +A
Sbjct: 434 GRAGLLRDA 442
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH H K LD V N LI+ Y + + AR +FD M RD+ SWN++++ Y
Sbjct: 304 LGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYG 363
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
E L LF + + D +T V + SAC ++ G+
Sbjct: 364 MHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGR 407
>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
Length = 642
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 158/456 (34%), Positives = 233/456 (51%), Gaps = 35/456 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSI 58
+G HA K +L SD +V N+LI+ Y AR++ D P DV SWNT+++
Sbjct: 23 VGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAG 82
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y + L F Q+ E + D++TL+ + ACAR + G H G E
Sbjct: 83 YIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEIN 142
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ ++L+ MYAKC ++EA R+F+ M R
Sbjct: 143 CYIGSSLVSMYAKCGMVEEARRVFNRMPER------------------------------ 172
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++V W SM+ GC ++ + +EA++LF+ M GV D+ + +V+S+C + L GR
Sbjct: 173 --NVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRY 230
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H + + + ++ VK +LIDMYSKCG + +A F +DV TWT MI G A GL
Sbjct: 231 LHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFRGLTKRDVFTWTVMIMGFAMNGL 290
Query: 299 GNEALRVFYQME-RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F QME + PNE F+ VL AC H GL+ +G F RM VY + P IEH+
Sbjct: 291 CVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHY 350
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RA LL +AE+FIK MP + +++LL AC + L + A + +L
Sbjct: 351 GCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEP 410
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRK 453
+ +VLLSN YA W +V R M +T +
Sbjct: 411 KRCGGHVLLSNVYATTSRWVDVNNVRTGMGNSRTSQ 446
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 142/306 (46%), Gaps = 35/306 (11%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D +L I SA AR+ L G H + K+ L + NAL+ MY+ C A RL
Sbjct: 4 DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASA-RLV 62
Query: 143 DEMGSR--RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
+ R ++VS N +I GYI + P +
Sbjct: 63 LDSAPRWASDVVSWNTIIAGYI-------------------------------RGGMPNK 91
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
AL+ F +M E V DE +++VL AC+ ++ G L H ++ N + ++ ++L+
Sbjct: 92 ALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVS 151
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
MY+KCG +EEA F + ++VV WT+MI G G EA+ +F M+ G+K ++AT
Sbjct: 152 MYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDAT 211
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
+V+++C G + G L G + + + L+D+ S+ G + +A + + +
Sbjct: 212 IATVVSSCGQMGALDLGRYLHAYCDG-HGLGKELSVKNSLIDMYSKCGDVNKAYQIFRGL 270
Query: 381 PAEDKF 386
D F
Sbjct: 271 TKRDVF 276
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 8/205 (3%)
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD--CK 281
+SA + + +L G H L+ ++ D+FV ALI+MYS C A +
Sbjct: 12 ISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWAS 71
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG--CQ 339
DVV+W T+I G G+ N+AL+ F+QM ++ ++ +E T ++VL AC +G + G C
Sbjct: 72 DVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCH 131
Query: 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
+ G + + I LV + ++ G++ +A MP E + + ++++ C
Sbjct: 132 ALVVLNG-FEINCYIGS--SLVSMYAKCGMVEEARRVFNRMP-ERNVVCWTSMIAGCTQS 187
Query: 400 SEFDLGKKVANNMMKLGNQSHEAYV 424
F + +M G ++ +A +
Sbjct: 188 GRFKEAVDLFRDMQIAGVKADDATI 212
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 233/419 (55%), Gaps = 5/419 (1%)
Query: 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT--VHC 108
SW + +++ + E F + GI + IT + L SAC + +H
Sbjct: 35 SWTSRITLLSRDDRLAEAAREFSDMRLAGIEPNHITFISLLSACGNFPSGSEALSDLLHG 94
Query: 109 YATKVGLEYMLNM-ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
YA K+GL+ M A+L MY+K + +A +FD M +N V+ N +I+GY+ V
Sbjct: 95 YACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYM-EDKNSVTWNTMIDGYMRNGQV 153
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227
D A +VFDE+ ++D++ W +M+ G VK EEAL F++M GV PD +++ L+AC
Sbjct: 154 DNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAALAAC 213
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
++L L +G HR+++ + + V +LID+Y +CG +E A F + + VV+W
Sbjct: 214 TNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVVSWN 273
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
++I G A G NE+L F +M+ +G KP+ TF L AC H GL+ EG Q F+ M
Sbjct: 274 SVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGFQYFQMMKTD 333
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD-LGK 406
YR+ P IEHF CLVDL SRAG L A + ++ MP + + +LL+AC + L +
Sbjct: 334 YRISPRIEHFGCLVDLYSRAGRLEDAIKVVESMPMKPNEVVIGSLLAACRNHGNHTILAE 393
Query: 407 KVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
++ ++ L + H YV+LSN YA +G W ++ RR MK L +K+PG S I++ Y
Sbjct: 394 RLMKHISDLDVKGHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGYSSIEIDDY 452
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 137/361 (37%), Gaps = 99/361 (27%)
Query: 5 LHAHVTKTALD-SDIYVGNSLIHFYGRMALFTDARVLFD--------------------- 42
LH + K LD S + VG +++ Y + AR++FD
Sbjct: 92 LHGYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYMEDKNSVTWNTMIDGYMRNG 151
Query: 43 ----------KMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFS 92
+MP RD+ SW +++ + E L F+++ G+ D + ++ +
Sbjct: 152 QVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAALA 211
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
AC L L +G H Y + + N+L+ +Y +C ++ A ++FD M +R +V
Sbjct: 212 ACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTM-EKRTVV 270
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
S W S++ G E+L F+KM +EG
Sbjct: 271 S-------------------------------WNSVIVGFAANGNANESLVYFRKMQEEG 299
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEA 271
PD L+ACS + ++ G + + + I+ L+D+YS+ G LE+A
Sbjct: 300 FKPDAVTFTGALTACSHVGLVEEGFQYFQMMKTDYRISPRIEHFGCLVDLYSRAGRLEDA 359
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
+ +E +KPNE S+LAACR+
Sbjct: 360 IKV----------------------------------VESMPMKPNEVVIGSLLAACRNH 385
Query: 332 G 332
G
Sbjct: 386 G 386
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
++ + +V+WT+ I L+ EA R F M GI+PN TF+S+L+AC
Sbjct: 27 QSTSETIVSWTSRITLLSRDDRLAEAAREFSDMRLAGIEPNHITFISLLSAC 78
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 163/521 (31%), Positives = 257/521 (49%), Gaps = 63/521 (12%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD-ARVLFDKMPFRDVGSWNTLMSIYNDFS 63
+HA + T L SD + + L+ L + A ++F ++ + NT++ Y + S
Sbjct: 30 IHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESS 89
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
L + ++ +G++ D T + AC + L G V A K G + + N
Sbjct: 90 TPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVN 149
Query: 124 ALLLMYAKCKE-------------------------------MDEALRLFDEMGSR---- 148
L+ MY +C E M+ A +FDEM R
Sbjct: 150 GLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVS 209
Query: 149 ---------------------------RNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
R++VS N +I+GY + +++ARE+FB+++ K+
Sbjct: 210 WSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKN 269
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W M+ G + +EAL LF++M+ +G+ PD +V +SACS L L GR +H
Sbjct: 270 VISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHL 329
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ +N + D V+TAL+DMY KCGS +EA F ++VV+W MI GL G G E
Sbjct: 330 YMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKE 389
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL F QME + I ++ F+ VL AC H+ L+TEG +F +M GVYR++P +EH+ CLV
Sbjct: 390 ALECFXQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLV 449
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L Q + I+ MP + + +LL AC + L + V + +L
Sbjct: 450 DLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSG 509
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVL+SN YA G W + R+ MKE + +K G S+I++
Sbjct: 510 VYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEV 550
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 6/201 (2%)
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS----LNILINGYIDMEL-VDLAREV 173
L ++N LL + K + L++ ++ + N++S + L++ + L V+ A V
Sbjct: 8 LQLKNPLLSLLQXSKTSSQILQIHAQLITT-NLISDTFAASRLLDSVVSKTLNVNYAELV 66
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
F +I + + +M+ ++ PE AL + +M +G+ D VL AC ++ L
Sbjct: 67 FAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGL 126
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
G LV ++ D FV LI MY +CG A F KD+V+W +M+ G
Sbjct: 127 LEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGY 186
Query: 294 ANYGLGNEALRVFYQMERKGI 314
G A +F +M + +
Sbjct: 187 VWCGEMENAQNMFDEMPERDV 207
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 5/152 (3%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H ++ + + DI V +L+ Y + +AR +F+ MP R+V SWN ++
Sbjct: 324 GRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGM 383
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG---LEYM 118
E L F Q+ E I D + + + AC+ + G +H + G LE
Sbjct: 384 NGFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTEG--LHIFNQMKGVYRLEPK 441
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
L L+ + + ++D+ + M + N
Sbjct: 442 LEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPN 473
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 154/499 (30%), Positives = 256/499 (51%), Gaps = 63/499 (12%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND- 61
K +H + + D++VGN+LI Y + L +A +F+ M F+DV SWN +++ Y+
Sbjct: 292 KEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQS 351
Query: 62 -------------------------------FSDSG---EVLILFKQLIFEGIVADKITL 87
+S G E L LF+Q+IF G + + +T+
Sbjct: 352 GNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTI 411
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ + SACA L G +H Y+ K +L ++N D G
Sbjct: 412 ISVLSACASLGAFSQGTEIHAYSLK---NCLLTLDN-------------------DFGGE 449
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIV--DKDIVLWRSMMHGCVKAKQPEEALELF 205
+++ N LI+ Y AR +FD+I ++++V W M+ G + +AL+LF
Sbjct: 450 DEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLF 509
Query: 206 KKMIDE--GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA--FVKTALIDM 261
+MI E GV P+ + +L AC+ L+ ++ G+ +H ++L+++ + + FV LIDM
Sbjct: 510 VEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDM 569
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
YSKCG ++ A F K ++WT+M+ G +G G+EAL +F +M + G P++ TF
Sbjct: 570 YSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITF 629
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
+ VL AC H G++ +G F M Y + P EH+ C +DLL+R+G L +A +K MP
Sbjct: 630 LVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMP 689
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
E + + ALLSAC +S +L + N ++++ ++ +Y L+SN YA G W +VA
Sbjct: 690 MEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVAR 749
Query: 442 ARRNMKELQTRKKPGNSII 460
R MK+ +K+PG S +
Sbjct: 750 IRHLMKKSGIKKRPGCSWV 768
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 220/425 (51%), Gaps = 36/425 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSI 58
G H + +S++++ N+L+ Y R +A ++FD++ R DV SWN+++S
Sbjct: 181 GSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSA 240
Query: 59 YNDFSDSGEVLILFKQLIFEGIV--------ADKITLVILFSACARLEKLHYGKTVHCYA 110
+ S++ L LF ++ IV +D I++V + AC L+ + K VH A
Sbjct: 241 HVKSSNAWTALDLFSKMTL--IVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNA 298
Query: 111 TKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLA 170
+ G + + NAL+ YAKC M+ A+++F+ M +++VS N ++ GY + A
Sbjct: 299 IRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM-EFKDVVSWNAMVAGYSQSGNFEAA 357
Query: 171 REVF----DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
E+F E + D+V W +++ G + EAL LF++MI G P+ ++SVLSA
Sbjct: 358 FELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSA 417
Query: 227 CSSLSNLQYGRLVHRFILQNNI----------TQDAFVKTALIDMYSKCGSLEEALVTF- 275
C+SL G +H + L+N + +D V ALIDMYSKC S + A F
Sbjct: 418 CASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFD 477
Query: 276 -YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM--ERKGIKPNEATFVSVLAACRHSG 332
+ ++VVTWT MI G A YG N+AL++F +M E G+ PN T +L AC H
Sbjct: 478 DIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLA 537
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
I G Q+ + +R + + +FV CL+D+ S+ G + A M ++ IS+
Sbjct: 538 AIRIGKQIHAYVLRHHRYESS-AYFVANCLIDMYSKCGDVDTARHVFDSM-SQKSAISWT 595
Query: 391 ALLSA 395
++++
Sbjct: 596 SMMTG 600
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 125/277 (45%), Gaps = 35/277 (12%)
Query: 74 QLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
+++ G D TL + AC L G H G E + + NAL+ MY++C
Sbjct: 152 RMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 211
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
++EA +FDE+ R ID D++ W S++ V
Sbjct: 212 SLEEASMIFDEITQRG------------ID-----------------DVISWNSIVSAHV 242
Query: 194 KAKQPEEALELFKKM---IDEGVTPDEEVMVS---VLSACSSLSNLQYGRLVHRFILQNN 247
K+ AL+LF KM + E T + ++S +L AC SL + + VH ++N
Sbjct: 243 KSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG 302
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
D FV ALID Y+KCG +E A+ F + KDVV+W M+ G + G A +F
Sbjct: 303 TFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFK 362
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
M ++ I + T+ +V+A G E LFR+M
Sbjct: 363 NMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 399
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 118/273 (43%), Gaps = 23/273 (8%)
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
++ Y+ D A V + + V W ++ +K + + A+ + +M+ G PD
Sbjct: 102 VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPD 161
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF- 275
+ VL AC L + + G H I N + F+ AL+ MYS+CGSLEEA + F
Sbjct: 162 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 221
Query: 276 --YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM----------ERKGIKPNEATFVS 323
+ DV++W +++ AL +F +M ER I + V+
Sbjct: 222 EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI----ISIVN 277
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMP 381
+L AC G + Q G R + FV L+D ++ GL+ A + +M
Sbjct: 278 ILPAC---GSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMME 334
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+D +S+ A+++ F+ ++ NM K
Sbjct: 335 FKD-VVSWNAMVAGYSQSGNFEAAFELFKNMRK 366
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 25/193 (12%)
Query: 1 MGKGLHAHVTKTAL--DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
+GK +HA+V + S +V N LI Y + AR +FD M + SW ++M+
Sbjct: 541 IGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTG 600
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y E L +F ++ G V D IT +++ AC+ HC GL Y
Sbjct: 601 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS-----------HCGMVDQGLSYF 649
Query: 119 LNMENALLL------------MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMEL 166
+M L + A+ +D+A R +M V L++
Sbjct: 650 DSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSN 709
Query: 167 VDLAREVFDEIVD 179
V+LA +++V+
Sbjct: 710 VELAEHALNKLVE 722
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 9/150 (6%)
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
T ++ Y CG+ + AL+ + V W +I G + A+ V +M R G +
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159
Query: 316 PNEATFVSVLAACRHSGLITEGC-QLFRRMGGVYRVQPTIEHFVC--LVDLLSRAGLLYQ 372
P+ T VL AC L + C F + + + F+C LV + SR G L +
Sbjct: 160 PDHFTLPHVLKACGE--LPSYRCGSAFHGLICCNGFESNV--FICNALVAMYSRCGSLEE 215
Query: 373 AEEFIKIMPAE--DKFISYKALLSACITYS 400
A + D IS+ +++SA + S
Sbjct: 216 ASMIFDEITQRGIDDVISWNSIVSAHVKSS 245
>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Glycine max]
Length = 682
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 142/440 (32%), Positives = 250/440 (56%), Gaps = 6/440 (1%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ ++ +++ + +M AR+ FD+MP R V SWN ++S Y + E + LF
Sbjct: 195 EKNVITWTTMVTGHAKMRNLETARMYFDEMPERRVASWNAMLSGYAQSGAAQETVRLFDD 254
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
++ G D+ T V + S+C+ L +++ ++ ++ ALL M+AKC
Sbjct: 255 MLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYFVKTALLDMHAKCGN 314
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
++ A ++F+++G +N V+ N +I+ Y + + LAR++F+++ +++ V W SM+ G +
Sbjct: 315 LEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQ 374
Query: 195 AKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ +A++LFK+MI + PDE MVSV SAC L L G + +N+I
Sbjct: 375 NGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLGRLGLGNWAVSILHENHIKLSIS 434
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
+LI MY +CGS+E+A +TF + KD+V++ T+I GLA +G G E++++ +M+ G
Sbjct: 435 GYNSLIFMYLRCGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKEDG 494
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
I P+ T++ VL AC H+GL+ EG ++F + P ++H+ C++D+L R G L +A
Sbjct: 495 IGPDRITYIGVLTACSHAGLLEEGWKVFESIK-----VPDVDHYACMIDMLGRVGKLEEA 549
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE 433
+ I+ MP E Y +LL+A + + +LG+ A + K+ + YVLLSN YAL
Sbjct: 550 VKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYVLLSNIYALA 609
Query: 434 GHWTEVAEARRNMKELQTRK 453
G W +V + R M++ +K
Sbjct: 610 GRWKDVDKVRDKMRKQGVKK 629
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 159/328 (48%), Gaps = 36/328 (10%)
Query: 123 NALLLMYAKCKEMDEALRLFDEMG-SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N ++ Y KC EA RLF MG S +N+++ ++ G+ M ++ AR FDE+ ++
Sbjct: 169 NVIISGYWKCGNEKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERR 228
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W +M+ G ++ +E + LF M+ G PDE V+VLS+CSSL + + R
Sbjct: 229 VASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVR 288
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLE------------------EALVTFY------- 276
+ + N + FVKTAL+DM++KCG+LE A+++ Y
Sbjct: 289 KLDRMNFRSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLS 348
Query: 277 -------KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAAC 328
K ++ V+W +MI G A G +A+++F +M K KP+E T VSV +AC
Sbjct: 349 LARDLFNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSAC 408
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
H G + G + + ++ +I + L+ + R G + A + M +D +S
Sbjct: 409 GHLGRLGLGNWAVSILHENH-IKLSISGYNSLIFMYLRCGSMEDARITFQEMATKD-LVS 466
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLG 416
Y L+S + K+ + M + G
Sbjct: 467 YNTLISGLAAHGHGTESIKLMSKMKEDG 494
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 96/243 (39%), Gaps = 69/243 (28%)
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYS-------------------------------K 264
G L+H ++L+ + D V+ A++ +Y+ K
Sbjct: 118 GMLLHAYLLKLGHSHDHHVRNAIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYWK 177
Query: 265 CGSLEEA--LVTFYKTDCKDVVTWTTMI-------------------------------E 291
CG+ +EA L K+V+TWTTM+
Sbjct: 178 CGNEKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERRVASWNAMLS 237
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
G A G E +R+F M G +P+E T+V+VL++C G + R++ R+
Sbjct: 238 GYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLD---RMN 294
Query: 352 PTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
+FV L+D+ ++ G L A++ + + +++ A++SA + L + +
Sbjct: 295 FRSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLF 354
Query: 410 NNM 412
N M
Sbjct: 355 NKM 357
>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
Length = 784
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 238/463 (51%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + K DSD Y+G L+ Y + DA +FD M RD+ WN L+S +
Sbjct: 228 LGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCS 287
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E +F L EG+ ++ TL + + A LE + VH A K+G + +
Sbjct: 288 HGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAH 347
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N L+ Y KC + +A+R VF+E
Sbjct: 348 VVNGLIDSYWKCSCLSDAIR--------------------------------VFEECSSG 375
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DI+ SM+ + E A++LF +M+ +G+ PD V+ S+L+AC+SLS + G+ VH
Sbjct: 376 DIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVH 435
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ DAF AL+ Y+KCGS+E+A + F + VV+W+ MI GLA +G G
Sbjct: 436 AHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 495
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F +M +GI PN T SVL AC H+GL+ E + F M ++ + T EH+ C+
Sbjct: 496 RALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCM 555
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLL RAG L A E + MP + + ALL A + + +LGK A + L +
Sbjct: 556 IDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKS 615
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLL+N YA G W EVA+ R+ MK+ +K+P S +++K
Sbjct: 616 GTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVK 658
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 159/326 (48%), Gaps = 33/326 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLMSIY 59
+G +HA T SD++V N+L+ YG DAR +FD+ R+ SWN LMS Y
Sbjct: 25 LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAY 84
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
G+ + +F ++++ GI + + +AC + G+ VH ++G E
Sbjct: 85 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYE--- 141
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+++ + N L++ Y+ M VD+A +F+++ D
Sbjct: 142 -----------------------------KDVFTANALVDMYVKMGRVDIASVIFEKMPD 172
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W +++ GCV A+EL +M G+ P+ ++ S+L AC+ GR +
Sbjct: 173 SDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQI 232
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H F+++ N D ++ L+DMY+K L++A+ F +D++ W +I G ++ G
Sbjct: 233 HGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRH 292
Query: 300 NEALRVFYQMERKGIKPNEATFVSVL 325
+EA +FY + ++G+ N T +VL
Sbjct: 293 DEAFSIFYGLRKEGLGVNRTTLAAVL 318
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 124/254 (48%), Gaps = 7/254 (2%)
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEI-VDKDIVLWRSMMHGCVKAKQPEEALEL 204
G ++ N L+ Y +D AR VFDE +++ V W +M VK Q +A+++
Sbjct: 37 GFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQV 96
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
F +M+ G+ P E V++AC+ N+ GR VH +++ +D F AL+DMY K
Sbjct: 97 FGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVK 156
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
G ++ A V F K DVV+W +I G G + A+ + QM+ G+ PN S+
Sbjct: 157 MGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSI 216
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF--VCLVDLLSRAGLLYQAEEFIKIMPA 382
L AC +G G Q+ G + + + + V LVD+ ++ L A + M
Sbjct: 217 LKACAGAGAFDLGRQIH---GFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSH 273
Query: 383 EDKFISYKALLSAC 396
D I + AL+S C
Sbjct: 274 RD-LILWNALISGC 286
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 12/194 (6%)
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M EGV +E + VL + + Q G VH + D FV AL+ MY G
Sbjct: 1 MRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57
Query: 268 LEEALVTFYKTDC-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+++A F + ++ V+W ++ +A++VF +M GI+P E F V+
Sbjct: 58 MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117
Query: 327 ACRHSGLITEGCQLFR---RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
AC S I G Q+ RMG + + LVD+ + G + A + MP
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMG----YEKDVFTANALVDMYVKMGRVDIASVIFEKMPDS 173
Query: 384 DKFISYKALLSACI 397
D +S+ AL+S C+
Sbjct: 174 D-VVSWNALISGCV 186
>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
Length = 645
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 229/462 (49%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHA K ++ +V SL+ Y + L A+ +FD+MP W L++ Y D
Sbjct: 90 GEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMD 149
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D E + + + G+ D T V + +ACAR+ L G+TV A + G+ + +
Sbjct: 150 AGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFV 209
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
A + +Y KC EM +A REVFD++ KD
Sbjct: 210 ATAAVDLYVKCGEMAKA--------------------------------REVFDKMRHKD 237
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G P EAL+LF M EG+ PD + LSAC+ L L GR R
Sbjct: 238 AVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIR 297
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + + TALIDMY+KCGS EA V F + KD++ W MI GL G
Sbjct: 298 MVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI 357
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A + QME+ G+K N+ TF+ +L +C H+GLI +G + F M +Y + P IEH+ C+V
Sbjct: 358 AFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMV 417
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLLSRAGLL +A + + MP + ALL C + +L + V ++ L +
Sbjct: 418 DLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSG 477
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YV+LSN Y+ G W + A+ R +MK K P S ++ +
Sbjct: 478 NYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFE 519
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 2/177 (1%)
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
+ +++ SA L+ G +H L+ + V T+L+ +Y+KCG L A F +
Sbjct: 73 IPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEM 132
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338
V WT +I + G EA+ V G++P+ T V VL AC + G
Sbjct: 133 PHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGE 192
Query: 339 QLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
++ R V ++ VDL + G + +A E M +D +++ A++
Sbjct: 193 TVW-RAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDA-VAWGAMVGG 247
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 152/447 (34%), Positives = 247/447 (55%), Gaps = 2/447 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
++Y N ++ Y ++ +AR LFD+M +DV SWNT++ Y E + L++
Sbjct: 128 NLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFR 187
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+ + + + C +L++L K VH G L + ++++ YAKC EM
Sbjct: 188 RLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMR 247
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A LFDEM ++I + +++GY ++ A E+F ++ +K+ V W +++ G +
Sbjct: 248 CARTLFDEM-LVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNS 306
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
EAL+ F KM+ G+ P++ S L AC+S++ L++G+ VH ++++ + V +
Sbjct: 307 LGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVS 366
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
+LIDMYSKCG LE + F+ K DVV W TMI LA G G +A+++F M G+K
Sbjct: 367 SLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLK 426
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
P+ TF+ +L+AC HSGL+ EG + F+ M + V P EH+ CL+DLL RAG +
Sbjct: 427 PDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVN 486
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
++ M + + ALL C ++ +LG+KVA +++L QS AYV L++ YA G
Sbjct: 487 ELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGK 546
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDL 462
W V + R M E RK+ G S ID+
Sbjct: 547 WESVEKVRELMDEKFIRKERGISWIDV 573
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 174/393 (44%), Gaps = 41/393 (10%)
Query: 61 DFSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
D S G E L +L G+ V L CA+ + GK VH + G +
Sbjct: 36 DLSSQGRLPEALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKR 95
Query: 118 MLNM-ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ N L+ MY +C EA ++FD+M S RN+ S N ++ GY + V+ AR++FD
Sbjct: 96 PTTIVANHLIGMYFECGRDVEARKVFDKM-SVRNLYSWNHMLAGYAKLGDVNNARKLFDR 154
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFK--KMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
+++KD+V W +++ K EA+ L++ + +D G VL C L LQ
Sbjct: 155 MMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFS--FAGVLILCVKLKELQ 212
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
+ VH +L + + ++++D Y+KCG + A F + KD+ WTT++ G A
Sbjct: 213 LAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYA 272
Query: 295 NYG-------------------------------LGNEALRVFYQMERKGIKPNEATFVS 323
+G LG+EAL F +M + GI P + TF S
Sbjct: 273 KWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSS 332
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
L AC + G Q+ + Y TI L+D+ S+ G+L + +M +
Sbjct: 333 CLCACASIAALKHGKQVHGYLIRTYFRCNTIV-VSSLIDMYSKCGMLEASCCVFHLMGNK 391
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ + ++SA + ++ N+M++ G
Sbjct: 392 QDVVVWNTMISALAQNGHGEKAMQMFNDMVESG 424
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 33/279 (11%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFK 73
L DI+ +++ Y + A LF +MP ++ SW+ L+S Y S E L F
Sbjct: 257 LVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFT 316
Query: 74 QLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
+++ GI ++ T ACA + L +GK VH Y + + ++L+ MY+KC
Sbjct: 317 KMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCG 376
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
++ + +F MG+++++ V+W +M+
Sbjct: 377 MLEASCCVFHLMGNKQDV-------------------------------VVWNTMISALA 405
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDA 252
+ E+A+++F M++ G+ PD + +LSACS +Q G R + + D
Sbjct: 406 QNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQ 465
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMI 290
+ LID+ + G E + CK D W+ ++
Sbjct: 466 EHYSCLIDLLGRAGCFVELVNELENMSCKPDDRVWSALL 504
>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
Length = 618
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/444 (32%), Positives = 246/444 (55%), Gaps = 11/444 (2%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N+++ Y DA LFD MP RD GSWN L++ + + LF ++ ++
Sbjct: 133 NTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWNILLAALVRSGNMDKARKLFDRMPERNVM 192
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGL-EYMLNMENALLLMYAKCKEMDEALR 140
A + + AR G A G+ E + NA++ YA+ +DEA
Sbjct: 193 A----WTTMVAGIAR-----SGSVDEARALFDGMPERNVVSWNAMISGYARNHRIDEAHD 243
Query: 141 LFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
LF +M +R +I S NI+I G+I ++ A+++FD++ ++++ W +MM+G +++ Q E
Sbjct: 244 LFMKMPTR-DIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSET 302
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
AL++F M+ EG+ P++ + + ACS+L+ L G+ VH+ I + + D F+++ L++
Sbjct: 303 ALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMN 362
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
+Y+KCG + A F + KDV++W MI A++G+G EA+ ++ +M+ KG KPN+ T
Sbjct: 363 LYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVT 422
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
+V +L+AC HSGL+ EG ++F M + EH+ CL+DL SRAG L A+ I +
Sbjct: 423 YVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFL 482
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440
E + ALL C ++ +G A N+++ + Y LL N YA G W E A
Sbjct: 483 KVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAA 542
Query: 441 EARRNMKELQTRKKPGNSIIDLKH 464
+ R M + +K+PG S I++++
Sbjct: 543 KIRSEMNDRGLKKQPGCSWIEVEN 566
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 141/328 (42%), Gaps = 60/328 (18%)
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ YA+ + +A LFD +RRN+V+ L++GY VD A +F + ++++V
Sbjct: 71 ALVAAYARQGMLHDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFQRMPERNVV 130
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMI--DEGV-----------------------TPDEE 218
W +M+ A + +A LF M D G P+
Sbjct: 131 SWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWNILLAALVRSGNMDKARKLFDRMPERN 190
Query: 219 VM--VSVLSACSSLSNLQYGRLVHRFILQNNI------------------TQDAFVKTAL 258
VM ++++ + ++ R + + + N+ D F+K
Sbjct: 191 VMAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAMISGYARNHRIDEAHDLFMKMPT 250
Query: 259 IDMYS---------KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
D+ S + LE A F K ++V+TWTTM+ G AL++F M
Sbjct: 251 RDIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGM 310
Query: 310 ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRA 367
+GI+PN+ TF+ + AC + ++EG Q+ + + + + F+ L++L ++
Sbjct: 311 LVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQM---ICKTSFQFDTFIESTLMNLYAKC 367
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSA 395
G + A + + +D IS+ +++A
Sbjct: 368 GEIRLARKVFDLSKEKD-VISWNGMIAA 394
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 105/270 (38%), Gaps = 66/270 (24%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + KT+ D ++ ++L++ Y + AR +FD +DV SWN +++ Y
Sbjct: 338 GQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAH 397
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + L++++ +G + +T V L SAC+ H G
Sbjct: 398 HGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACS-----HSGL----------------- 435
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+DE LR+F+ M R+I + ID+
Sbjct: 436 -------------VDEGLRIFEYMVKDRSIAVRDEHYTCLIDL----------------- 465
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
C +A + +A L + V P V ++L C+S N G L R
Sbjct: 466 ----------CSRAGRLGDAKRLIHFL---KVEPSSTVWNALLGGCNSHGNESIGDLAAR 512
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEA 271
+L+ +A T L ++Y+ G +EA
Sbjct: 513 NLLEAE-PNNAGTYTLLCNIYASAGKWKEA 541
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
+ G + +A F +T +DVV+WT ++ A G+ ++A +F +R + N T+
Sbjct: 46 AAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALF---DRPDARRNVVTWT 102
Query: 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382
++L+ +G + E LF+RM + + + +++ + AG + A MP
Sbjct: 103 ALLSGYARAGRVDEAEALFQRM-----PERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPV 157
Query: 383 EDKFISYKALLSACITYSEFDLGKKVANNM 412
D S+ LL+A + D +K+ + M
Sbjct: 158 RDAG-SWNILLAALVRSGNMDKARKLFDRM 186
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 147/420 (35%), Positives = 235/420 (55%), Gaps = 10/420 (2%)
Query: 52 WNTLMSIY-----NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV 106
WNTL+ + + + +F ++ F G+ D T L + A LH G++V
Sbjct: 27 WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86
Query: 107 HCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMEL 166
H + GL ++ +L+ MY+ C + A ++FDE+ + ++ S N +IN L
Sbjct: 87 HAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEI-PQPDLPSWNSIINANFQAGL 145
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT---PDEEVMVSV 223
VD+AR +F + +++++ W M++G V+ Q +EAL LF++M GV P+E M V
Sbjct: 146 VDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGV 205
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-KD 282
L+AC L L++G+ H +I + + D + TALIDMY+KCGS+E+A F KD
Sbjct: 206 LAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKD 265
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
V+ W+ MI GLA +GL E + +F +M +G++PN TF++V AC H GL++EG R
Sbjct: 266 VMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLR 325
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
RM Y + PTI+H+ C+VDL RAG + +A +K MP E + + ALLS + +
Sbjct: 326 RMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDI 385
Query: 403 DLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ + +++L + AYVLLSN YA G W +V R M+ + +K PG S+I++
Sbjct: 386 ETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEV 445
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 140/333 (42%), Gaps = 67/333 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
+G+ +HA + + L D +V SLI Y AR +FD++P D+ SWN++++
Sbjct: 82 LGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANF 141
Query: 58 -------------------------IYNDFSDSG---EVLILFKQLIFEG---IVADKIT 86
+ N + G E L LF+++ G + ++ T
Sbjct: 142 QAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFT 201
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+ + +AC RL L +GK H Y K G+ + + AL+ MYAKC +++A +F +G
Sbjct: 202 MSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLG 261
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
+KD++ W +M+ G EE + LF
Sbjct: 262 P-------------------------------NKDVMAWSAMISGLAMHGLAEECVGLFS 290
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKC 265
KMI++GV P+ ++V AC + G+ + R +I ++D+Y +
Sbjct: 291 KMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRA 350
Query: 266 GSLEEALVTFYKTDCK-DVVTWTTMIEGLANYG 297
G ++EA + DV+ W ++ G +G
Sbjct: 351 GRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHG 383
>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
Length = 623
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 153/446 (34%), Positives = 241/446 (54%), Gaps = 14/446 (3%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N+++ Y DA LFD+MP RD GSWN L++ + LF ++ ++
Sbjct: 140 NTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGRMPERDVM 199
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
A + AR K+ + + E + NA++ Y + +DEAL L
Sbjct: 200 A----WTTMVDGVARSGKVDEARVLFDSMP----ERNVVSWNAMISGYTRNHRIDEALDL 251
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
F +M R+I S NI++ G+I + + ARE+FDE+ ++++V W +MM+G +K KQ E A
Sbjct: 252 FMKM-PERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELA 310
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L LF M+ G P++ + L ACS L+ L G+ VH+ I + DAFV++AL+++
Sbjct: 311 LGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNV 370
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y+KCG + A F + KD+++W +I A++G+G EA+ ++ +M+ G +PN+ T+
Sbjct: 371 YAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTY 430
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI---K 378
V +L+AC HSGL+ EG ++F M + EH+ CL+DL SRAG L A+ I K
Sbjct: 431 VVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLK 490
Query: 379 IMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438
I PA + ALL C + +G A N+++ + Y LLSN YA G W E
Sbjct: 491 IKPASGSV--WSALLGGCNAHGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKWKE 548
Query: 439 VAEARRNMKELQTRKKPGNSIIDLKH 464
AE R M +K+PG S I++ +
Sbjct: 549 AAEIRSEMNNRGLKKQPGCSWIEVAN 574
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ YA+ + +A LFD +RRN+V+ L++GY LVD A +F + +++V
Sbjct: 78 ALVSAYARRGMLRDARELFDRPDARRNVVTWTALLSGYARARLVDEAEALFQRMPQRNVV 137
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMI--DEGVTPDEEVMVSVLSACSSLSNLQ--YGRLV 239
W +M+ A + +A LF +M D G ++++ L S+ + +GR+
Sbjct: 138 SWNTMLEAYAAAGRVGDACALFDRMPVRDAG---SWNILLATLVRSGSVDKARELFGRMP 194
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
R D T ++D ++ G ++EA V F ++VV+W MI G
Sbjct: 195 ER---------DVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRNHRI 245
Query: 300 NEALRVFYQMERKGI 314
+EAL +F +M + I
Sbjct: 246 DEALDLFMKMPERDI 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 107/271 (39%), Gaps = 67/271 (24%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + KT D +V ++L++ Y + AR LFD +D+ SWN +++ Y
Sbjct: 345 GKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAH 404
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E ++L++++ G + +T V+L SAC+ H G
Sbjct: 405 HGVGIEAILLYEKMQENGYRPNDVTYVVLLSACS-----HSGL----------------- 442
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+DE L++F+ M + R+I + ID+
Sbjct: 443 -------------VDEGLKIFESMVNDRSIAVRDEHYTCLIDL----------------- 472
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE-EVMVSVLSACSSLSNLQYGRLVH 240
C +A + ++A L + + P V ++L C++ N G L
Sbjct: 473 ----------CSRAGRLDDAKRLIHYL---KIKPASGSVWSALLGGCNAHGNESIGNLAA 519
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
R +LQ +A T L ++Y+ G +EA
Sbjct: 520 RNLLQAE-PDNAGTYTLLSNIYASAGKWKEA 549
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LI + G + +A F T DVV+WT ++ A G+ +A +F +R + N
Sbjct: 48 LIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELF---DRPDARRN 104
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI 377
T+ ++L+ + L+ E LF+RM Q + + +++ + AG + A
Sbjct: 105 VVTWTALLSGYARARLVDEAEALFQRM-----PQRNVVSWNTMLEAYAAAGRVGDACALF 159
Query: 378 KIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
MP D S+ LL+ + D +++ M
Sbjct: 160 DRMPVRDAG-SWNILLATLVRSGSVDKARELFGRM 193
>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 877
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 238/463 (51%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + K DSD Y+G L+ Y + DA +FD M RD+ WN L+S +
Sbjct: 321 LGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCS 380
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E +F L EG+ ++ TL + + A LE + VH A K+G + +
Sbjct: 381 HGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAH 440
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N L+ Y KC + +A+R VF+E
Sbjct: 441 VVNGLIDSYWKCSCLSDAIR--------------------------------VFEECSSG 468
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DI+ SM+ + E A++LF +M+ +G+ PD V+ S+L+AC+SLS + G+ VH
Sbjct: 469 DIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVH 528
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ DAF AL+ Y+KCGS+E+A + F + VV+W+ MI GLA +G G
Sbjct: 529 AHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 588
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F +M +GI PN T SVL AC H+GL+ E + F M ++ + T EH+ C+
Sbjct: 589 RALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCM 648
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLL RAG L A E + MP + + ALL A + + +LGK A + L +
Sbjct: 649 IDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKS 708
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLL+N YA G W EVA+ R+ MK+ +K+P S +++K
Sbjct: 709 GTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVK 751
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 159/326 (48%), Gaps = 33/326 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLMSIY 59
+G +HA T SD++V N+L+ YG DAR +FD+ R+ SWN LMS Y
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAY 177
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
G+ + +F ++++ GI + + +AC + G+ VH ++G E
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYE--- 234
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+++ + N L++ Y+ M VD+A +F+++ D
Sbjct: 235 -----------------------------KDVFTANALVDMYVKMGRVDIASVIFEKMPD 265
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W +++ GCV A+EL +M G+ P+ ++ S+L AC+ GR +
Sbjct: 266 SDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQI 325
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H F+++ N D ++ L+DMY+K L++A+ F +D++ W +I G ++ G
Sbjct: 326 HGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRH 385
Query: 300 NEALRVFYQMERKGIKPNEATFVSVL 325
+EA +FY + ++G+ N T +VL
Sbjct: 386 DEAFSIFYGLRKEGLGVNRTTLAAVL 411
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 110/398 (27%), Positives = 179/398 (44%), Gaps = 44/398 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LHA++ K+ + + N LI FY + AR +FD++P SW++L++ Y++
Sbjct: 23 GAHLHANLLKSGFLASLR--NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ F + EG+ ++ L ++ C +L G VH A G + +
Sbjct: 81 NGLPRSAIQAFHGMRAEGVCCNEFALPVVLK-CVPDAQL--GAQVHAMAMATGFGSDVFV 137
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI-VDK 180
NAL+ MY MD+A R VFDE ++
Sbjct: 138 ANALVAMYGGFGFMDDA--------------------------------RRVFDEAGSER 165
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ V W +M VK Q +A+++F +M+ G+ P E V++AC+ N+ GR VH
Sbjct: 166 NAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVH 225
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ +D F AL+DMY K G ++ A V F K DVV+W +I G G +
Sbjct: 226 AMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDH 285
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF--V 358
A+ + QM+ G+ PN S+L AC +G G Q+ G + + + + V
Sbjct: 286 RAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIH---GFMIKANADSDDYIGV 342
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
LVD+ ++ L A + M D I + AL+S C
Sbjct: 343 GLVDMYAKNHFLDDAMKVFDWMSHRD-LILWNALISGC 379
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 110/247 (44%), Gaps = 12/247 (4%)
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
N LI+ Y AR VFDEI D V W S++ P A++ F M EGV
Sbjct: 41 NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
+E + VL + + Q G VH + D FV AL+ MY G +++A
Sbjct: 101 CNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157
Query: 275 FYKTDC-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F + ++ V+W ++ +A++VF +M GI+P E F V+ AC S
Sbjct: 158 FDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217
Query: 334 ITEGCQLFR---RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
I G Q+ RMG + + LVD+ + G + A + MP D +S+
Sbjct: 218 IDAGRQVHAMVVRMG----YEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSD-VVSWN 272
Query: 391 ALLSACI 397
AL+S C+
Sbjct: 273 ALISGCV 279
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 154/499 (30%), Positives = 256/499 (51%), Gaps = 63/499 (12%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND- 61
K +H + + D++VGN+LI Y + L +A +F+ M F+DV SWN +++ Y+
Sbjct: 285 KEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQS 344
Query: 62 -------------------------------FSDSG---EVLILFKQLIFEGIVADKITL 87
+S G E L LF+Q+IF G + + +T+
Sbjct: 345 GNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTI 404
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ + SACA L G +H Y+ K +L ++N D G
Sbjct: 405 ISVLSACASLGAFSQGTEIHAYSLK---NCLLTLDN-------------------DFGGE 442
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIV--DKDIVLWRSMMHGCVKAKQPEEALELF 205
+++ N LI+ Y AR +FD+I ++++V W M+ G + +AL+LF
Sbjct: 443 DEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLF 502
Query: 206 KKMIDE--GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA--FVKTALIDM 261
+MI E GV P+ + +L AC+ L+ ++ G+ +H ++L+++ + + FV LIDM
Sbjct: 503 VEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDM 562
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
YSKCG ++ A F K ++WT+M+ G +G G+EAL +F +M + G P++ TF
Sbjct: 563 YSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITF 622
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
+ VL AC H G++ +G F M Y + P EH+ C +DLL+R+G L +A +K MP
Sbjct: 623 LVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMP 682
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
E + + ALLSAC +S +L + N ++++ ++ +Y L+SN YA G W +VA
Sbjct: 683 MEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVAR 742
Query: 442 ARRNMKELQTRKKPGNSII 460
R MK+ +K+PG S +
Sbjct: 743 IRHLMKKSGIKKRPGCSWV 761
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 220/425 (51%), Gaps = 36/425 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSI 58
G H + +S++++ N+L+ Y R +A ++FD++ R DV SWN+++S
Sbjct: 174 GSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSA 233
Query: 59 YNDFSDSGEVLILFKQLIFEGIV--------ADKITLVILFSACARLEKLHYGKTVHCYA 110
+ S++ L LF ++ IV +D I++V + AC L+ + K VH A
Sbjct: 234 HVKSSNAWTALDLFSKMTL--IVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNA 291
Query: 111 TKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLA 170
+ G + + NAL+ YAKC M+ A+++F+ M +++VS N ++ GY + A
Sbjct: 292 IRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM-EFKDVVSWNAMVAGYSQSGNFEAA 350
Query: 171 REVF----DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
E+F E + D+V W +++ G + EAL LF++MI G P+ ++SVLSA
Sbjct: 351 FELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSA 410
Query: 227 CSSLSNLQYGRLVHRFILQNNI----------TQDAFVKTALIDMYSKCGSLEEALVTF- 275
C+SL G +H + L+N + +D V ALIDMYSKC S + A F
Sbjct: 411 CASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFD 470
Query: 276 -YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM--ERKGIKPNEATFVSVLAACRHSG 332
+ ++VVTWT MI G A YG N+AL++F +M E G+ PN T +L AC H
Sbjct: 471 DIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLA 530
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
I G Q+ + +R + + +FV CL+D+ S+ G + A M ++ IS+
Sbjct: 531 AIRIGKQIHAYVLRHHRYESS-AYFVANCLIDMYSKCGDVDTARHVFDSM-SQKSAISWT 588
Query: 391 ALLSA 395
++++
Sbjct: 589 SMMTG 593
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 125/277 (45%), Gaps = 35/277 (12%)
Query: 74 QLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
+++ G D TL + AC L G H G E + + NAL+ MY++C
Sbjct: 145 RMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 204
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
++EA +FDE+ R ID D++ W S++ V
Sbjct: 205 SLEEASMIFDEITQRG------------ID-----------------DVISWNSIVSAHV 235
Query: 194 KAKQPEEALELFKKM---IDEGVTPDEEVMVS---VLSACSSLSNLQYGRLVHRFILQNN 247
K+ AL+LF KM + E T + ++S +L AC SL + + VH ++N
Sbjct: 236 KSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG 295
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
D FV ALID Y+KCG +E A+ F + KDVV+W M+ G + G A +F
Sbjct: 296 TFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFK 355
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
M ++ I + T+ +V+A G E LFR+M
Sbjct: 356 NMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 392
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 118/273 (43%), Gaps = 23/273 (8%)
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
++ Y+ D A V + + V W ++ +K + + A+ + +M+ G PD
Sbjct: 95 VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPD 154
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF- 275
+ VL AC L + + G H I N + F+ AL+ MYS+CGSLEEA + F
Sbjct: 155 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 214
Query: 276 --YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM----------ERKGIKPNEATFVS 323
+ DV++W +++ AL +F +M ER I + V+
Sbjct: 215 EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI----ISIVN 270
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMP 381
+L AC G + Q G R + FV L+D ++ GL+ A + +M
Sbjct: 271 ILPAC---GSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMME 327
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+D +S+ A+++ F+ ++ NM K
Sbjct: 328 FKD-VVSWNAMVAGYSQSGNFEAAFELFKNMRK 359
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 25/193 (12%)
Query: 1 MGKGLHAHVTKTAL--DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
+GK +HA+V + S +V N LI Y + AR +FD M + SW ++M+
Sbjct: 534 IGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTG 593
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y E L +F ++ G V D IT +++ AC+ HC GL Y
Sbjct: 594 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS-----------HCGMVDQGLSYF 642
Query: 119 LNMENALLL------------MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMEL 166
+M L + A+ +D+A R +M V L++
Sbjct: 643 DSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSN 702
Query: 167 VDLAREVFDEIVD 179
V+LA +++V+
Sbjct: 703 VELAEHALNKLVE 715
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 9/150 (6%)
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
T ++ Y CG+ + AL+ + V W +I G + A+ V +M R G +
Sbjct: 93 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152
Query: 316 PNEATFVSVLAACRHSGLITEGC-QLFRRMGGVYRVQPTIEHFVC--LVDLLSRAGLLYQ 372
P+ T VL AC L + C F + + + F+C LV + SR G L +
Sbjct: 153 PDHFTLPHVLKACGE--LPSYRCGSAFHGLICCNGFESNV--FICNALVAMYSRCGSLEE 208
Query: 373 AEEFIKIMPAE--DKFISYKALLSACITYS 400
A + D IS+ +++SA + S
Sbjct: 209 ASMIFDEITQRGIDDVISWNSIVSAHVKSS 238
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 156/458 (34%), Positives = 246/458 (53%), Gaps = 35/458 (7%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
A LF ++P D +N ++ + + + L+ ++ + D T + AC R
Sbjct: 61 AHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTR 120
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD------------- 143
L ++ G VH ++G + N LL+ +AKC +++ A LFD
Sbjct: 121 LFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSL 180
Query: 144 ------------------EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
EM R++VS N++I GY+ ++ AR +FDE KD+V W
Sbjct: 181 IAGYARRGDLKVARKLFNEM-PERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSW 239
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
+M+ G V ++ALELF +M GV PDE ++S+LSAC+ L +L+ G+ VH +++
Sbjct: 240 NAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVME 299
Query: 246 NNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
++ + + ALIDMY+KCG+++E+L F+ KDV++W ++I G+A +G G E+L
Sbjct: 300 ISMGKLSTLLGNALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLS 359
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+F M+R I PNE TFV VL AC H+G I EG + F M Y+++P I H C+VD+L
Sbjct: 360 LFKMMQRTKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDML 419
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA-Y 423
RAGLL +A +FI M E I ++ LL+AC + + +L KVAN + + H Y
Sbjct: 420 GRAGLLKEAAKFIDSMKIEPNAIIWRTLLAACKVHGDVELA-KVANEKLFSMRKDHSGDY 478
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
VL+SN YA G W + R+ M + K G+S ++
Sbjct: 479 VLMSNLYASRGEWDGAEKVRKLMDDSGVTKIRGSSFVE 516
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 131/291 (45%), Gaps = 45/291 (15%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ D+ N +I Y + AR+LFD+ P +DV SWN +++ Y S + L LF +
Sbjct: 202 ERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNE 261
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN-MENALLLMYAKCK 133
+ G+ D++TL+ L SACA L L GK VH ++ + + + NAL+ MYAKC
Sbjct: 262 MCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCG 321
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
+ E+L +VF I DKD++ W S++ G
Sbjct: 322 NIKESL--------------------------------DVFWSITDKDVISWNSVIVGMA 349
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQNNI 248
+E+L LFK M + P+E V VL ACS + G + + ++ NI
Sbjct: 350 LHGHGKESLSLFKMMQRTKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNI 409
Query: 249 TQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLANYG 297
++DM + G L+EA + K + + + W T++ +G
Sbjct: 410 RHCG----CMVDMLGRAGLLKEAAKFIDSMKIE-PNAIIWRTLLAACKVHG 455
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 114/256 (44%), Gaps = 18/256 (7%)
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS 225
+ + A ++F +I D ++ M+ G ++ P A+ L+ +M V D VL
Sbjct: 57 VTNYAHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLK 116
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVV 284
AC+ L + G VH +L+ +A V+ L+ ++KCG L A + + CK DVV
Sbjct: 117 ACTRLFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVA-TSLFDDSCKGDVV 175
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
W+++I G A G A ++F +M + + V +G + +G RM
Sbjct: 176 AWSSLIAGYARRGDLKVARKLFNEMPERDL---------VSWNVMITGYVKQGEMESARM 226
Query: 345 GGVYRVQPT--IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF---ISYKALLSACITY 399
++ P + + ++ GL QA E M F ++ +LLSAC
Sbjct: 227 --LFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADL 284
Query: 400 SEFDLGKKVANNMMKL 415
+ + GKKV +M++
Sbjct: 285 GDLENGKKVHAKVMEI 300
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 256/462 (55%), Gaps = 7/462 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + KT L SD+++ N LI Y + AR +FD+MP RD S+N+++ Y
Sbjct: 144 GMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVK 203
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ LF + E + + I+ + S A+ G + + L
Sbjct: 204 CGSTESARELFDLMPEE--MKNLISWNSMISGYAQTSD---GVDIASKLFSEMPDKDLIS 258
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+++ Y K +++A LFD M RR++V+ + +I+GY + V A+ +FD++ +D
Sbjct: 259 WNSMIDGYVKHGRIEDAKYLFDVM-PRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRD 317
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V + SM+ G V+ + EALE+F M E ++PDE +V VLSA + L L +H
Sbjct: 318 VVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMH 377
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I++ + ALIDMYSKCGS++ A++ F + K + W MI GLA +GLG
Sbjct: 378 LYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGE 437
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A + Q+ER+ IKP++ TFV +L AC HSGL+ EG F M ++++P ++H+ C+
Sbjct: 438 SAFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 497
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+LSR+G + A+ I+ MP E + ++ L+AC + EF+ G+ VA +++ +
Sbjct: 498 VDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFETGELVAKHLIWEAGYNP 557
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+YVLLSN YA G W +V R MKE + K PG S I+L
Sbjct: 558 SSYVLLSNLYASFGKWKDVRRIRTIMKERKIEKVPGCSWIEL 599
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 172/331 (51%), Gaps = 24/331 (7%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN ++ ++ +D L+LF ++ G+ DK +L ++ AC+RL + G +H +
Sbjct: 93 WNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQIHGFLK 152
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K GL L ++N L+ +Y KC + A ++FD M +R+ VS N +I+GY+ + AR
Sbjct: 153 KTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRM-PQRDSVSYNSMIDGYVKCGSTESAR 211
Query: 172 EVFDEIVD--KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
E+FD + + K+++ W SM+ G Q + +++ K+ E PD++ ++S S
Sbjct: 212 ELFDLMPEEMKNLISWNSMISGYA---QTSDGVDIASKLFSE--MPDKD----LISWNSM 262
Query: 230 LSN-LQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+ +++GR+ +++ +D + +ID Y+K G + +A F + +DVV++
Sbjct: 263 IDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYN 322
Query: 288 TMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
+MI G EAL +F ME++ + P+E T V VL+A G +++ +
Sbjct: 323 SMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMH----- 377
Query: 347 VYRVQPTI----EHFVCLVDLLSRAGLLYQA 373
+Y V+ + V L+D+ S+ G + A
Sbjct: 378 LYIVEKQFFLGGKLGVALIDMYSKCGSIQHA 408
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 119/268 (44%), Gaps = 40/268 (14%)
Query: 167 VDLAREVFDEIV----------DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
V+ AR VF E +D LW +++ P AL LF M++ GV+ D
Sbjct: 65 VEFARFVFHEYXIRSFSPGGGDXEDXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVD 124
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
+ + VL ACS L ++ G +H F+ + + D F++ LI +Y KCG L A F
Sbjct: 125 KFSLSLVLKACSRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFD 184
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA-CRHSGLIT 335
+ +D V++ +MI+G G E+ R + + + +K N ++ S+++ + S +
Sbjct: 185 RMPQRDSVSYNSMIDGYVKCG-STESARELFDLMPEEMK-NLISWNSMISGYAQTSDGVD 242
Query: 336 EGCQLFRRMGG------------------------VYRVQP--TIEHFVCLVDLLSRAGL 369
+LF M ++ V P + + ++D ++ G
Sbjct: 243 IASKLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGF 302
Query: 370 LYQAEEFIKIMPAEDKFISYKALLSACI 397
++QA+ MP D +SY ++++ +
Sbjct: 303 VHQAKTLFDQMPHRD-VVSYNSMIAGYV 329
>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 721
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 156/464 (33%), Positives = 245/464 (52%), Gaps = 32/464 (6%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP-FRDVGSWNTLMSIYND 61
K LH DS V N+ + +Y + L +A +F M RD SWN+++ Y
Sbjct: 158 KQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQ 217
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + L L+K++IF+G D TL + +A L+ L G+ H K G ++
Sbjct: 218 HKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHV 277
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ L+ Y+KC G R +G D E +VF EI+ D
Sbjct: 278 GSGLIDFYSKC-------------GGR----------DGMSDSE------KVFQEILSPD 308
Query: 182 IVLWRSMMHG-CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+VLW +M+ G + + EEA++ F++M G PD+ V V SACS+LS+ G+ +H
Sbjct: 309 LVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIH 368
Query: 241 RFILQNNITQDAF-VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
+++NI + V ALI +Y K G+L +A F + + V++ MI+G A +G G
Sbjct: 369 GLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHG 428
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EALR++ +M GI PN TFV++L+AC H G + EG + F M ++++P EH+ C
Sbjct: 429 TEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSC 488
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
++DLL RAG L +AE FI MP + +++ ALL AC + L ++ A +M + +
Sbjct: 489 MIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLA 548
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YV+L+N YA G W E+A R++M+ + RKKPG S I++K
Sbjct: 549 ATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVK 592
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 129/483 (26%), Positives = 207/483 (42%), Gaps = 108/483 (22%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARV---------------------- 39
GK LHA K+ + S Y+ N ++ Y + + AR
Sbjct: 27 GKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKAYAK 86
Query: 40 ---------LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
LFD+ P D S+NTL+S Y D ++ ++LFK++ G D TL L
Sbjct: 87 DSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGL 146
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
+AC +++ K +HC+A G + ++ NA + Y+K + EA+ +F M R+
Sbjct: 147 IAACC--DRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRD 204
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
VS W SM+ + K+ +AL L+K+MI
Sbjct: 205 EVS-------------------------------WNSMIVAYGQHKEGAKALALYKEMIF 233
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG---S 267
+G D + SVL+A +SL +L GR H +++ Q++ V + LID YSKCG
Sbjct: 234 KGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDG 293
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLA-NYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+ ++ F + D+V W TMI G + N EA++ F QM+R G +P++ +FV V +
Sbjct: 294 MSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTS 353
Query: 327 ACRHSGLITEGCQ-----------------------LFRRMGG------VYRVQPTIE-- 355
AC + ++G Q L+ + G V+ P +
Sbjct: 354 ACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAV 413
Query: 356 HFVCLVDLLSRAG------LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
F C++ ++ G LYQ I P I++ A+LSAC + D G+K
Sbjct: 414 SFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNN---ITFVAILSACAHCGKVDEGQKYF 470
Query: 410 NNM 412
N M
Sbjct: 471 NTM 473
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 4/229 (1%)
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
L GK++H K + + N + +Y+KC + A FD N+ S N+++
Sbjct: 24 LFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDST-EEPNVFSYNVIVK 82
Query: 160 GYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
Y + +AR++FDE D V + +++ G A++ A+ LFK+M + G D
Sbjct: 83 AYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFT 142
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279
+ +++AC +L + +H F + + V A + YSK G L EA+ FY D
Sbjct: 143 LSGLIAACCDRVDLI--KQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMD 200
Query: 280 -CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+D V+W +MI + G +AL ++ +M KG K + T SVL A
Sbjct: 201 GLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNA 249
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 151/455 (33%), Positives = 247/455 (54%), Gaps = 11/455 (2%)
Query: 11 KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLI 70
++ D ++ N ++ Y + DAR +FD+MP RD SWNT++S Y + +GE L+
Sbjct: 197 ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGY---AQNGE-LL 252
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLNMENALLLMY 129
++L E V D T + S + L + V K + + NA++ Y
Sbjct: 253 EAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSW-----NAIIAGY 307
Query: 130 AKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMM 189
+CK MD+A LF+ M + N+ S N +I GY + AR FD + +D + W +++
Sbjct: 308 VQCKRMDQARELFEAMPCQ-NVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAII 366
Query: 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249
G ++ EEAL LF +M +G + S LS C+ ++ L+ G+ VH +++ +
Sbjct: 367 AGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLE 426
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
+V AL+ MY KCG++++A + F + K+VV+W TMI G A +G G EAL +F M
Sbjct: 427 SGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESM 486
Query: 310 ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL 369
++ GI P++ T V VL+AC H+GL+ +G + F M Y + +H+ C++DLL RAG
Sbjct: 487 KKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGR 546
Query: 370 LYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429
L A+ +K MP E ++ ALL A + +LG+K A + ++ + YVLLSN
Sbjct: 547 LDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNL 606
Query: 430 YALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YA G W +V R M++ +K PG S +++++
Sbjct: 607 YAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQN 641
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 157/351 (44%), Gaps = 63/351 (17%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ N +I R AR+LFD+MP RDV SWN ++S Y E +F ++
Sbjct: 110 DLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP 169
Query: 77 ------FEGIVADKIT------LVILFSACARLEKLHYGKTVHCYATKVGL-------EY 117
+ G++A + LF + A E + + + Y + L +
Sbjct: 170 CKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDR 229
Query: 118 MLNME----NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
M + N ++ YA+ E+ EA RLF+E R++ + +++GY+ ++D AR V
Sbjct: 230 MPERDEVSWNTMISGYAQNGELLEAQRLFEE-SPVRDVFTWTAMVSGYVQNGMLDEARRV 288
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
FD + +K+ V W +++ G V+ K+ ++A ELF+ M C ++S+
Sbjct: 289 FDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAM-----------------PCQNVSSW 331
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
+I Y++ G + +A F + +D ++W +I G
Sbjct: 332 ----------------------NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGY 369
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
A G G EAL +F +M+R G + N +TF S L+ C + G Q+ R+
Sbjct: 370 AQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRV 420
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/421 (23%), Positives = 187/421 (44%), Gaps = 43/421 (10%)
Query: 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IYNDFSDSG 66
+ A D+DI N I + R A LF+ MP R SWN ++S + ND
Sbjct: 40 TSSLATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSND----- 94
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME---- 122
L +QL + D ++ ++ S C R L A ++ + M +
Sbjct: 95 -KFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLR--------AARLLFDQMPERDVVSW 145
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
NA+L YA+ + EA +FDEM +N +S N ++ Y+ ++ AR +F+ D ++
Sbjct: 146 NAMLSGYAQNGYVKEAKEIFDEMPC-KNSISWNGMLAAYVQNGRIEDARRLFESKADWEL 204
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH-R 241
+ W MM G VK + +A +F +M + DE +++S + Q G L+ +
Sbjct: 205 ISWNCMMGGYVKRNRLVDARGIFDRMPER----DEVSWNTMISGYA-----QNGELLEAQ 255
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + +D F TA++ Y + G L+EA F K+ V+W +I G ++
Sbjct: 256 RLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQ 315
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A +F M + N +++ +++ +G I + F RM Q + ++
Sbjct: 316 ARELFEAMPCQ----NVSSWNTMITGYAQNGDIAQARNFFDRM-----PQRDSISWAAII 366
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFI---SYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
+++G +A M + + + ++ + LS C + +LGK+V ++K G +
Sbjct: 367 AGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLE 426
Query: 419 S 419
S
Sbjct: 427 S 427
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 57/95 (60%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V K L+S YVGN+L+ Y + DA ++F+ + ++V SWNT+++ Y
Sbjct: 412 LGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYA 471
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
E L+LF+ + GI+ D +T+V + SAC+
Sbjct: 472 RHGFGKEALMLFESMKKTGILPDDVTMVGVLSACS 506
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 119/277 (42%), Gaps = 22/277 (7%)
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+IV NI I ++ D A +F+ + + + W +M+ GC+ + A +LF+KM
Sbjct: 48 DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKM- 106
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
T D ++S C NL+ RL + +D A++ Y++ G ++
Sbjct: 107 ---PTRDLVSWNVMISGCVRYRNLRAARL----LFDQMPERDVVSWNAMLSGYAQNGYVK 159
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
EA F + CK+ ++W M+ G +A R+F ++A + + C
Sbjct: 160 EAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF---------ESKADWELISWNCM 210
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEH--FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
G + + R G++ P + + ++ ++ G L +A+ + P D F
Sbjct: 211 MGGYVKRNRLVDAR--GIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVF- 267
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
++ A++S + D ++V + M + + S A +
Sbjct: 268 TWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAII 304
>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
Length = 1100
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 229/462 (49%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHA K ++ +V SL+ Y + L A+ +FD+MP W L++ Y D
Sbjct: 545 GEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMD 604
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D E + + + G+ D T V + +ACAR+ L G+TV A + G+ + +
Sbjct: 605 AGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFV 664
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
A + +Y KC EM +A REVFD++ KD
Sbjct: 665 ATAAVDLYVKCGEMAKA--------------------------------REVFDKMRHKD 692
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G P EAL+LF M EG+ PD + LSAC+ L L GR R
Sbjct: 693 AVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIR 752
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + + TALIDMY+KCGS EA V F + KD++ W MI GL G
Sbjct: 753 MVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI 812
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A + QME+ G+K N+ TF+ +L +C H+GLI +G + F M +Y + P IEH+ C+V
Sbjct: 813 AFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMV 872
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLLSRAGLL +A + + MP + ALL C + +L + V ++ L +
Sbjct: 873 DLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSG 932
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YV+LSN Y+ G W + A+ R +MK K P S ++ +
Sbjct: 933 NYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFE 974
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 2/176 (1%)
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
+ +++ SA L+ G +H L+ + V T+L+ +Y+KCG L A F +
Sbjct: 528 IPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEM 587
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338
V WT +I + G EA+ V G++P+ T V VL AC + G
Sbjct: 588 PHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGE 647
Query: 339 QLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
++ R V ++ VDL + G + +A E M +D +++ A++
Sbjct: 648 TVW-RAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDA-VAWGAMVG 701
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 149/393 (37%), Positives = 227/393 (57%), Gaps = 9/393 (2%)
Query: 72 FKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK 131
+ Q++ G+ + T + +C+ L GK +HC A K+GL L + L+ +YA+
Sbjct: 133 YSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGLGSDLYVRTGLVDVYAR 188
Query: 132 CKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHG 191
++ A +LFD+M R++VSL ++ Y M +D AR +F+ + ++D+V W M+ G
Sbjct: 189 GGDVVCARQLFDKM-PERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGG 247
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
++ P E+L+LF++M+ P+E +++VLSAC L L+ GR +H +I I +
Sbjct: 248 YAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQIN 307
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
V TALIDMYSKCGSLE+A + F + KDVV W +MI G A +G AL++F +M
Sbjct: 308 VHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTE 367
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY 371
G KP + TF+ +L+AC H GL+ EG FR M Y ++P IEH+ C+V+LL RAG L
Sbjct: 368 TGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLE 427
Query: 372 QAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM--KLGNQSHEAYVLLSNF 429
+A +K M + + LL C + LG+++A ++ KL N YVLLSN
Sbjct: 428 EAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSG--TYVLLSNM 485
Query: 430 YALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YA G+W VA+ R MKE K+ G S I++
Sbjct: 486 YAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEV 518
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 65/322 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR-------------- 47
GK LH K L SD+YV L+ Y R AR LFDKMP R
Sbjct: 160 GKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSK 219
Query: 48 -----------------DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
DV WN ++ Y E L LF++++ + +++T++ +
Sbjct: 220 MGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAV 279
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SAC +L L G+ +H Y G++ +++ AL+ MY+KC +++A +FD
Sbjct: 280 LSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFD------- 332
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
I DKD+V W SM+ G + AL+LF++M +
Sbjct: 333 -------------------------RIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTE 367
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLE 269
G P + + +LSAC ++ GR R + I ++++ + G LE
Sbjct: 368 TGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLE 427
Query: 270 EAL-VTFYKTDCKDVVTWTTMI 290
EA + T D V W T++
Sbjct: 428 EAYGLVKNMTIAADPVLWGTLL 449
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 36/248 (14%)
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
L Y + +D + VF+ + ++ + +++H V+++ + A + +M+ GV P+
Sbjct: 85 LQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPN 144
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM--------------- 261
SVL +CS L+ G+++H ++ + D +V+T L+D+
Sbjct: 145 AFTFSSVLKSCS----LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFD 200
Query: 262 ----------------YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
YSK G L++A F +DVV W MI G A G+ NE+L++
Sbjct: 201 KMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKL 260
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F +M PNE T ++VL+AC G + G + + +Q + L+D+ S
Sbjct: 261 FRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIEN-KGIQINVHVGTALIDMYS 319
Query: 366 RAGLLYQA 373
+ G L A
Sbjct: 320 KCGSLEDA 327
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 10/176 (5%)
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H +L+ + + + L Y+ G L+ ++ F D +V +++ +I L
Sbjct: 66 IHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRL 125
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACR-HSGLITEGCQLFR-RMGGVYRVQPTIEH 356
+ A + QM G++PN TF SVL +C SG + CQ + +G V+
Sbjct: 126 FDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESGKVLH-CQAIKLGLGSDLYVRTG--- 181
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
LVD+ +R G + A + MP E +S +L+ E D + + M
Sbjct: 182 ---LVDVYARGGDVVCARQLFDKMP-ERSLVSLTTMLTCYSKMGELDKARSLFEGM 233
>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g65570-like [Vitis vinifera]
Length = 751
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 151/464 (32%), Positives = 252/464 (54%), Gaps = 36/464 (7%)
Query: 3 KGLHAHVTKTALD---SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+G AH L S+++VG++L+ Y + DAR++ D++ +DV + L+ Y
Sbjct: 194 EGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGY 253
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ + GE L +F+ + +GI A++ TL + C LE L G+ +H K GLE +
Sbjct: 254 SHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAV 313
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ +LL MY +C +D++L+ VF + ++
Sbjct: 314 ASQTSLLTMYYRCGLVDDSLK--------------------------------VFKQFIN 341
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+ V W S++ G V+ + E AL F++M+ +TP+ + SVL ACSSL+ L+ G+ +
Sbjct: 342 PNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQI 401
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +++ + D +V ALID Y KCGS E A F DVV+ +MI A G G
Sbjct: 402 HAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFG 461
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+EAL++F M+ G++PN T++ VL+AC ++GL+ EGC +F ++ T +H+ C
Sbjct: 462 HEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYAC 521
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL RAG L +AE I + D I ++ LLSAC + + ++ K+V N ++ L +
Sbjct: 522 MVDLLGRAGRLKEAEMLINQVNISDVVI-WRTLLSACRIHGDVEMAKRVMNRVIDLAPED 580
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLLSN YA G+W++V E + M+E++ +K P S +D++
Sbjct: 581 GGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVE 624
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 166/322 (51%), Gaps = 33/322 (10%)
Query: 20 VGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG 79
+GN LI Y + AR +FD++P R + +WN++++ Y S E + ++++++ +G
Sbjct: 112 LGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG 171
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM-LNMENALLLMYAKCKEMDEA 138
I+ D+ T +F A + L +H G+ H + +G+ + + +AL+ MYAK +M +
Sbjct: 172 ILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRD- 230
Query: 139 LRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP 198
AR V D++V KD+VL+ +++ G +
Sbjct: 231 -------------------------------ARLVSDQVVGKDVVLFTALIVGYSHHGED 259
Query: 199 EEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTAL 258
E+L++F+ M +G+ +E + SVL C +L +L GRL+H I++ + +T+L
Sbjct: 260 GESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSL 319
Query: 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
+ MY +CG ++++L F + + VTWT++I GL G AL F QM R I PN
Sbjct: 320 LTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNS 379
Query: 319 ATFVSVLAACRHSGLITEGCQL 340
T SVL AC ++ +G Q+
Sbjct: 380 FTLSSVLRACSSLAMLEQGKQI 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 33/216 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA V K LD D YVG +LI FYG+ AR +F+ + DV S N+++ Y
Sbjct: 398 GKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQ 457
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF + G+ + +T + + SAC L G + A G N+
Sbjct: 458 NGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSG-----NI 512
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
E L + C + D +G + +LIN ++ D
Sbjct: 513 E--LTKDHYAC--------MVDLLGRAGRLKEAEMLIN----------------QVNISD 546
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217
+V+WR+++ C E A + ++ID + P++
Sbjct: 547 VVIWRTLLSACRIHGDVEMAKRVMNRVID--LAPED 580
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 255/521 (48%), Gaps = 64/521 (12%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+ A + + YV +++ + + AR LFD P V WN + Y +
Sbjct: 44 VQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAF 103
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
EV+ LF ++ + + T ++ +CA++ G+ +HC K GLE +
Sbjct: 104 YREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATT 163
Query: 125 LLLMYAK-------------------------------CKEMDEALRLFDEMGSRRNIVS 153
L+ +Y+ C + A RLFD + R++V
Sbjct: 164 LIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFD-LAPERDVVL 222
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK-----------AKQPE--- 199
NI+++GYI++ + AR++FD + +D + W +M++G + PE
Sbjct: 223 WNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNV 282
Query: 200 -----------------EALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
E L FK+M+ +G V P++ +V+VLSAC+ L L G+ VH
Sbjct: 283 FSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHV 342
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ +V ALIDMYSKCG +E A+ F D KD++TW +MI GLA +G G +
Sbjct: 343 YAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGAD 402
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F+QM+ G KP+ TF+ VL +C H GL+ EG F M Y + P IEH+ C+V
Sbjct: 403 ALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMV 462
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL RAGLL +A EF+K MP E + + ALL AC Y DL + ++ L ++
Sbjct: 463 DLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPA 522
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN Y G W +VA + M++ ++K PG S+I++
Sbjct: 523 NYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEV 563
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + IYVGN+LI Y + L +A +F+ M +D+ +WN+++
Sbjct: 336 LGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLA 395
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-----VHCYATKVGL 115
+ L LF Q+ G D IT + + +C L + G + V+ Y+ +
Sbjct: 396 THGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQI 455
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLA 170
E+ ++ ++ + +D A+ M + V L+ Y +++L +LA
Sbjct: 456 EHY----GCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELA 509
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 84/198 (42%), Gaps = 17/198 (8%)
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
EE +S+L +C +++ LQ V I+ + + +V ++ + + A F
Sbjct: 25 EEHFISLLRSCKTVALLQK---VQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFD 81
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
V W + G + E + +F +M+ ++PN TF VL +C G E
Sbjct: 82 HFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVE 141
Query: 337 G----CQLFRRMGGVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
G C++ + GG+ Q FV L+D+ S + A + M E +++
Sbjct: 142 GEEIHCEVIK--GGLEGNQ-----FVATTLIDVYSGGRAIGSAYKLFVGM-LERNIVAWT 193
Query: 391 ALLSACITYSEFDLGKKV 408
+++S I + L +++
Sbjct: 194 SMISGYILCNRVALARRL 211
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 147/427 (34%), Positives = 224/427 (52%), Gaps = 40/427 (9%)
Query: 36 DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
DAR FD MP +DV SWNT++S GE LF + + V+
Sbjct: 122 DARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEKNCVS------------- 168
Query: 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLN 155
+A++ Y C ++D A+ F R++++
Sbjct: 169 --------------------------WSAMVSGYVACGDLDAAVECF-YAAPMRSVITWT 201
Query: 156 ILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215
+I GY+ V+LA +F E+ + +V W +M+ G V+ + E+ L LF+ M++ GV P
Sbjct: 202 AMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKP 261
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
+ + SVL CS+LS LQ G+ VH+ + + ++ D T+L+ MYSKCG L++A F
Sbjct: 262 NALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELF 321
Query: 276 YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335
+ KDVV W MI G A +G G +ALR+F +M+++G+KP+ TFV+VL AC H+GL+
Sbjct: 322 IQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVD 381
Query: 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
G Q F M + ++ EH+ C+VDLL RAG L +A + IK MP + Y LL A
Sbjct: 382 LGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGA 441
Query: 396 CITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKP 455
C + +L + A N+++L YV L+N YA + W VA RR+MK+ K P
Sbjct: 442 CRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIP 501
Query: 456 GNSIIDL 462
G S I++
Sbjct: 502 GYSWIEI 508
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 129/317 (40%), Gaps = 44/317 (13%)
Query: 122 ENALLLMYAKCKEMDEALRLFDEMG-------------------------------SRRN 150
N L+ Y +C ++D A+R+F++M + N
Sbjct: 44 SNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKIPQPN 103
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
VS NI++ + V AR FD + KD+ W +M+ + EA LF M +
Sbjct: 104 TVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPE 163
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
+ MVS AC L + +++ IT TA+I Y K G +E
Sbjct: 164 KNCV-SWSAMVSGYVACGDLDAAV--ECFYAAPMRSVITW-----TAMITGYMKFGRVEL 215
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F + + +VTW MI G G + LR+F M G+KPN + SVL C +
Sbjct: 216 AERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSN 275
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+ G Q+ + + T LV + S+ G L A E +P +D + +
Sbjct: 276 LSALQLGKQVHQLVCKCPLSSDTTAG-TSLVSMYSKCGDLKDAWELFIQIPRKD-VVCWN 333
Query: 391 ALLSACITYSEFDLGKK 407
A++S Y++ GKK
Sbjct: 334 AMISG---YAQHGAGKK 347
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 115/251 (45%), Gaps = 46/251 (18%)
Query: 28 YGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87
+GR+ L A LF +M R + +WN +++ Y + + + L LF+ ++ G+ + ++L
Sbjct: 210 FGRVEL---AERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSL 266
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ C+ L L GK VH K L +L+ MY+KC ++ +A LF ++
Sbjct: 267 TSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQI-P 325
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
R+++V N +I+GY HG K +AL LF +
Sbjct: 326 RKDVVCWNAMISGYAQ--------------------------HGAGK-----KALRLFDE 354
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT------ALIDM 261
M EG+ PD V+VL AC+ + G V F N + +D ++T ++D+
Sbjct: 355 MKKEGLKPDWITFVAVLLACNHAGLVDLG--VQYF---NTMRRDFGIETKPEHYACMVDL 409
Query: 262 YSKCGSLEEAL 272
+ G L EA+
Sbjct: 410 LGRAGKLSEAV 420
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V K L SD G SL+ Y + DA LF ++P +DV WN ++S Y
Sbjct: 281 LGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYA 340
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSAC 94
+ L LF ++ EG+ D IT V + AC
Sbjct: 341 QHGAGKKALRLFDEMKKEGLKPDWITFVAVLLAC 374
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 144/463 (31%), Positives = 260/463 (56%), Gaps = 4/463 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG--RMALFTD-ARVLFDKMPFRDVGSWNTLMSIY 59
K HA + L +D + + L+ F +L +D A +++ + V + N ++ +
Sbjct: 48 KQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMIRCF 107
Query: 60 NDFSDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ L+ + + A +K TL + AC+ + G V + K+G
Sbjct: 108 VKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKD 167
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + NAL+ +Y C ++ A ++FDE+ S R++VS N +I G++ + + +A+++F E+
Sbjct: 168 VFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMP 227
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+KD++ W +++ GCV+ + E+AL+ FK++ ++ + P+E ++VS+L+A + L L+YG+
Sbjct: 228 EKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKR 287
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H A + TAL+DMY+KCG ++E+ F + KD +W MI GLA +GL
Sbjct: 288 IHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGL 347
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G EAL +F + +G P TF+ VL AC +GL++EG F+ M Y ++P +EH+
Sbjct: 348 GQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYG 407
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDLLSRAG +Y A E I MPA + + ++L +C + +LG+++ N ++++
Sbjct: 408 CMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDPT 467
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+ YV L+ +A W +V++ RR M E + K G S+I+
Sbjct: 468 HNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIE 510
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 143/348 (41%), Gaps = 73/348 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP-FRDVGSWNTLM---- 56
G + HV K D++V N+LIH Y A+ +FD++P RDV SWN+++
Sbjct: 152 GAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFV 211
Query: 57 ------------------------SIYNDFSDSGEV---LILFKQLIFEGIVADKITLVI 89
+I + +GE+ L FK+L + + ++ LV
Sbjct: 212 RLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVS 271
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L +A A+L L YGK +H A + ++ AL+ MYAKC +DE+ LFD M
Sbjct: 272 LLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMP--- 328
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+KD W M+ G +EAL LF+K +
Sbjct: 329 -----------------------------EKDKWSWNVMICGLATHGLGQEALALFEKFL 359
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN---ITQDAFVKTALIDMYSKCG 266
+G P + VL+ACS + G+ H F L + I + ++D+ S+ G
Sbjct: 360 TQGFHPVNVTFIGVLTACSRAGLVSEGK--HFFKLMTDTYGIEPEMEHYGCMVDLLSRAG 417
Query: 267 SLEEALVTFYKTDC-KDVVTWTTMIEGLANYG---LGNEALRVFYQME 310
+ +A+ + D V W +++ +G LG E QM+
Sbjct: 418 FVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMD 465
>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial-like [Glycine max]
Length = 721
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 152/451 (33%), Positives = 236/451 (52%), Gaps = 33/451 (7%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFK 73
+D D+ N++IH Y DA LF +MP RDV SW+++++ + S + L+LF+
Sbjct: 177 MDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFR 236
Query: 74 QLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA-LLLMYAKC 132
++ G+ LV SA A++ G +HC K+G + +A L+ YA C
Sbjct: 237 DMVASGVCLSSGVLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFYAGC 296
Query: 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC 192
K+M+ A R VF E+V K +V+W +++ G
Sbjct: 297 KQMEAACR--------------------------------VFGEVVYKSVVIWTALLTGY 324
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252
+ EALE+F +M+ V P+E S L++C L +++ G+++H ++ +
Sbjct: 325 GLNDKHREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGG 384
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
+V +L+ MYSKCG + +A+ F + K+VV+W ++I G A +G G AL +F QM R+
Sbjct: 385 YVGGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHGCGMWALALFNQMLRE 444
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
G+ P+ T +L+AC HSG++ + FR G V TIEH+ +VD+L R G L +
Sbjct: 445 GVDPDGITVTGLLSACSHSGMLQKARCFFRYFGQKRSVTLTIEHYTSMVDVLGRCGELEE 504
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432
AE + MP + + + ALLSAC +S DL K+ AN + ++ AYVLLSN YA
Sbjct: 505 AEAVVMSMPMKANSMVWLALLSACRKHSNLDLAKRAANQIFEIEPDCSAAYVLLSNLYAS 564
Query: 433 EGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
W EVA RR MK KKPG+S + LK
Sbjct: 565 SSRWAEVALIRRKMKHNGVVKKPGSSWLTLK 595
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 149/310 (48%), Gaps = 40/310 (12%)
Query: 36 DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVA------------D 83
+AR +FD++P V + ++ Y E + LF+++ F+ +V+ D
Sbjct: 73 EARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFKDVVSWNSIIKGCLHCGD 132
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKV-GLEYMLNMENALLLMYAKCKEMDEALRLF 142
+T LF R +TV + T V GL + ++ A L +A + MD
Sbjct: 133 IVTARKLFDEMPR-------RTVVSWTTLVDGLLRLGIVQEAETLFWAM-EPMD------ 178
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
R++ + N +I+GY VD A ++F ++ +D++ W SM+ G + E+AL
Sbjct: 179 ------RDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQAL 232
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-NNITQDAFVKTALIDM 261
LF+ M+ GV V+V LSA + + + G +H + + + D FV +L+
Sbjct: 233 VLFRDMVASGVCLSSGVLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTF 292
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN---EALRVFYQMERKGIKPNE 318
Y+ C +E A F + K VV WT ++ G YGL + EAL VF +M R + PNE
Sbjct: 293 YAGCKQMEAACRVFGEVVYKSVVIWTALLTG---YGLNDKHREALEVFGEMMRIDVVPNE 349
Query: 319 ATFVSVLAAC 328
++F S L +C
Sbjct: 350 SSFTSALNSC 359
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 1/179 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA K L+S YVG SL+ Y + +DA +F + ++V SWN+++
Sbjct: 368 GKVIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQ 427
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCY-ATKVGLEYMLN 120
L LF Q++ EG+ D IT+ L SAC+ L + Y K + +
Sbjct: 428 HGCGMWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFFRYFGQKRSVTLTIE 487
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+++ + +C E++EA + M + N + L++ +DLA+ ++I +
Sbjct: 488 HYTSMVDVLGRCGELEEAEAVVMSMPMKANSMVWLALLSACRKHSNLDLAKRAANQIFE 546
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 98/199 (49%), Gaps = 20/199 (10%)
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
I S L+ +++ +D AR +FD+I + L+ M+H + + EA++LF+++
Sbjct: 55 IKSHKYLLFHHLNNRSLDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRI-- 112
Query: 211 EGVTPDEEVMV--SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK-TALIDMYSKCGS 267
P ++V+ S++ C L G +V L + + + V T L+D + G
Sbjct: 113 ----PFKDVVSWNSIIKGC-----LHCGDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGI 163
Query: 268 LEEALVTFYKTDC--KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
++EA F+ + +DV W MI G + G ++AL++F QM + + ++ S++
Sbjct: 164 VQEAETLFWAMEPMDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDV----ISWSSMI 219
Query: 326 AACRHSGLITEGCQLFRRM 344
A H+G + LFR M
Sbjct: 220 AGLDHNGKSEQALVLFRDM 238
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
SL+EA F + V +T M+ A EA+ +F ++ K + ++ S++
Sbjct: 70 SLDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFKDV----VSWNSIIK 125
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE-FIKIMPAEDK 385
C H G I +LF M + T+ + LVD L R G++ +AE F + P +
Sbjct: 126 GCLHCGDIVTARKLFDEMP-----RRTVVSWTTLVDGLLRLGIVQEAETLFWAMEPMDRD 180
Query: 386 FISYKALL 393
++ A++
Sbjct: 181 VAAWNAMI 188
>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
Length = 735
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 144/463 (31%), Positives = 245/463 (52%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +H + K L + V NSL+ Y + A +F+ R+ +W+ +++ Y
Sbjct: 238 MGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYA 297
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ + +F Q+ G + T V + +A + L L GK H K+G E +
Sbjct: 298 QNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIY 357
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+++AL+ MYAKC + +A +E FD++ +
Sbjct: 358 VKSALVDMYAKCGCIADA--------------------------------KEGFDQLYEV 385
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIVLW +M+ G V+ + EEAL L+ +M EG+ P + + S L AC+ ++ L+ G+ +H
Sbjct: 386 DIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLH 445
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I++ + A V +AL MYSKCG+LE+ + F + +DV+ W ++I G + G GN
Sbjct: 446 TQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGN 505
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F +M+ +G P+ TF+++L AC H GL+ G + F M Y + P ++H+ C+
Sbjct: 506 GALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACM 565
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+LSRAG+L +A++FI+ + + ++ +L AC + +FD+G +M+LG +
Sbjct: 566 VDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTRDS 625
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AY+LLSN YA + W +V R M+ K PG S ++L
Sbjct: 626 SAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELN 668
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 163/331 (49%), Gaps = 35/331 (10%)
Query: 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL 75
S++YV SL++ Y ++ + +DAR +FD MP R+ SW+T+++ Y S E LF+ L
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFR-L 209
Query: 76 IFEGIVADKITLV--ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
+ E ++K V + SA + L G+ +H K GL +++EN+L+ MYAK
Sbjct: 210 MLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAG 269
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
M A +F+ R +I W +M+ G
Sbjct: 270 CMGAAFHVFESSRERNSIT--------------------------------WSAMITGYA 297
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ + + A+ +F +M G TP E V VL+A S L L G+ H +++ +
Sbjct: 298 QNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIY 357
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
VK+AL+DMY+KCG + +A F + D+V WT M+ G G EAL ++ +M+++G
Sbjct: 358 VKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEG 417
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
I P+++T S L AC + G QL ++
Sbjct: 418 IIPSKSTIASGLRACAGIAALEPGKQLHTQI 448
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 171/382 (44%), Gaps = 43/382 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRM--ALFTDARVLFDKMP--FRDVGSWNTLMS 57
G+ LHA K+ S V NSLI+FY + L A +FD +P RDV SWN+L+
Sbjct: 31 GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSLL- 89
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
N S + L + F +++ L + H +A
Sbjct: 90 --NPLSRHRPLDALSR---FRSMLSSSTVL----------------PSPHSFAAAFTAAA 128
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
A +A ++ A+ N+ L+N Y + +V AR +FD +
Sbjct: 129 RAASAPAGTAAHALACKIPSAV---------SNVYVCTSLLNMYCKLGIVSDARRMFDGM 179
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE-VMVSVLSACSSLSNLQYG 236
++ W +M+ G K EEA +LF+ M++E + E V +VLSA S L G
Sbjct: 180 PQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMG 239
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+H I+++ + V+ +L+ MY+K G + A F + ++ +TW+ MI G A
Sbjct: 240 EQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQN 299
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ---LFRRMGGVYRVQPT 353
G + A+ +F QM G P E TFV VL A G + G Q L ++G + VQ
Sbjct: 300 GEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLG--FEVQIY 357
Query: 354 IEHFVCLVDLLSRAGLLYQAEE 375
++ LVD+ ++ G + A+E
Sbjct: 358 VKS--ALVDMYAKCGCIADAKE 377
>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 166/510 (32%), Positives = 251/510 (49%), Gaps = 83/510 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH + + +++VGN L+ Y + + +A +F M +DV SWN +++ Y+
Sbjct: 247 LGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYS 306
Query: 61 D---FSD------------------------SG--------EVLILFKQLIFEGIVADKI 85
F D SG E L + +Q++ GI +++
Sbjct: 307 QIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEV 366
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME-------NALLLMYAKCKEMDEA 138
TL+ + S CA + L +GK +HCYA K ++ N N L+ MYAKCK+
Sbjct: 367 TLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKK---- 422
Query: 139 LRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK--DIVLWRSMMHGCVKAK 196
VD AR +FD + K D+V W M+ G +
Sbjct: 423 ----------------------------VDTARAMFDSLSPKERDVVTWTVMIGGYSQHG 454
Query: 197 QPEEALELFKKMIDEGVT--PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA-- 252
+ALEL +M +E P+ + L AC+SL+ L+ G+ +H + L+N Q+A
Sbjct: 455 DANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQ--QNAVP 512
Query: 253 -FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
FV LIDMY+KCGS+ +A + F K+ VTWT+++ G +G G EAL +F +M R
Sbjct: 513 LFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRR 572
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY 371
G K + T + VL AC HSG+I +G + F RM V+ V P EH+ CLVDLL RAG L
Sbjct: 573 IGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLN 632
Query: 372 QAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431
A I+ MP E + + A LS C + + +LG+ A + +L + +Y LLSN YA
Sbjct: 633 AALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYA 692
Query: 432 LEGHWTEVAEARRNMKELQTRKKPGNSIID 461
G W +V R M+ +K+PG S ++
Sbjct: 693 NAGRWKDVTRIRSLMRHKGVKKRPGCSWVE 722
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 210/412 (50%), Gaps = 22/412 (5%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ HA T S+++VGN+L+ Y R +DAR +FD+M DV SWN+++ Y
Sbjct: 146 GESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAK 205
Query: 62 FSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
L +F ++ E G D ITLV + CA L GK +HC+A + +
Sbjct: 206 LGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMF 265
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM----ELVDLAREVFDE 176
+ N L+ MYAKC MDEA +F M S +++VS N ++ GY + + V L ++ +E
Sbjct: 266 VGNCLVDMYAKCGMMDEANTVFSNM-SVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEE 324
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ D+V W + + G + EAL + ++M+ G+ P+E ++SVLS C+S+ L +G
Sbjct: 325 KIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384
Query: 237 RLVHRFIL-------QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK--DVVTWT 287
+ +H + + +N + V LIDMY+KC ++ A F K DVVTWT
Sbjct: 385 KEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWT 444
Query: 288 TMIEGLANYGLGNEALRVFYQM--ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
MI G + +G N+AL + +M E +PN T L AC + G Q+
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAY-- 502
Query: 346 GVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ Q + FV CL+D+ ++ G + A M A+++ +++ +L++
Sbjct: 503 ALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNE-VTWTSLMTG 553
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 104/352 (29%), Positives = 153/352 (43%), Gaps = 70/352 (19%)
Query: 24 LIHFYGRMALFTDARVLFDKMPFRDVG--SWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
LI Y + + A L + P D G WN+L+ Y D + + L LF +
Sbjct: 65 LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
D T +F AC + + G++ H + G + + NAL+ MY++C+ + +A
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDA--- 181
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
R+VFDE+ D+V W S++ K +P+ A
Sbjct: 182 -----------------------------RKVFDEMSVWDVVSWNSIIESYAKLGKPKVA 212
Query: 202 LELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
LE+F +M +E G PD +V+VL C+SL G+ +H F + + + Q+ FV L+D
Sbjct: 213 LEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVD 272
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTM------------------------------- 289
MY+KCG ++EA F KDVV+W M
Sbjct: 273 MYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVT 332
Query: 290 ----IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
I G A GLG EAL V QM GIKPNE T +SVL+ C G + G
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 125/273 (45%), Gaps = 13/273 (4%)
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNI---LINGYIDMELVDLAREVFDEIVDKD--IVLW 185
KCK + + ++L + I++LN+ LI+ YI + + A + D + W
Sbjct: 37 KCKTISQ-VKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHW 95
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
S++ + L LF M TPD V AC +S+++ G H L
Sbjct: 96 NSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLV 155
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
+ FV AL+ MYS+C SL +A F + DVV+W ++IE A G AL +
Sbjct: 156 TGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEM 215
Query: 306 FYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVD 362
F +M + G +P+ T V+VL C G + G QL +Q FV CLVD
Sbjct: 216 FSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQ---NMFVGNCLVD 272
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ ++ G++ +A M +D +S+ A+++
Sbjct: 273 MYAKCGMMDEANTVFSNMSVKD-VVSWNAMVAG 304
>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 960
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 239/461 (51%), Gaps = 1/461 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LHA + + D+ GN LI Y + A+ +F + D SWN+L++
Sbjct: 297 GAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVH 356
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
F + LILF Q+ +V D+ L + C+ + G+ +H Y K G+ +
Sbjct: 357 FGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPV 416
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NA++ MYAKC + D+A +F M RN +S +I + + AR FD + +++
Sbjct: 417 GNAIITMYAKCGDTDKADLVFRLM-PLRNTISWTAMITAFSRSGDIGKARGYFDMMPERN 475
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W SM+ V+ EE L+L+ M GV PD + + AC+ L+ ++ G V
Sbjct: 476 IVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVT 535
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ ++ + V +++ MYS+CG ++EA TF D KD+++W M+ A GLG +
Sbjct: 536 HATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIK 595
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
+ F M + KPN ++VSVL+ C H GL+ EG F M V+ + PT EHF C+V
Sbjct: 596 VIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMV 655
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAGLL QA++ I+ MP + + ALL +C + + L + A +M+L + E
Sbjct: 656 DLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSE 715
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN Y+ G VA+ R+ MK R G S I++
Sbjct: 716 GYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEV 756
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 115/439 (26%), Positives = 206/439 (46%), Gaps = 40/439 (9%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFR--DVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+I+ N++I + +DA LFD+MP R D SW T++S Y+ F
Sbjct: 73 NIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSL 132
Query: 75 LIFE----GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
+I + G D + + AC L +H +K+G ++N+++ MY
Sbjct: 133 MIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYV 192
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
KC ++D A +F ++ R ++ N +I GY M A ++F+ + ++D V W +++
Sbjct: 193 KCGDVDLAETVFFDI-ERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLIS 251
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
+ + L +F +M ++G +P+ SVLSAC+S S+L++G +H IL+ +
Sbjct: 252 IFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSL 311
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
D LIDMY+KCG L+ A F D ++W ++I G+ ++GLG +AL +F QM
Sbjct: 312 DLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMR 371
Query: 311 RKGIKPNEATFVSVLAACR-----HSGLITEGCQLFRRMGG------------------- 346
R + +E ++L C +G + G + MG
Sbjct: 372 RSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTD 431
Query: 347 ----VYRVQP---TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
V+R+ P TI + ++ SR+G + +A + +MP E +++ ++LS +
Sbjct: 432 KADLVFRLMPLRNTIS-WTAMITAFSRSGDIGKARGYFDMMP-ERNIVTWNSMLSTYVQN 489
Query: 400 SEFDLGKKVANNMMKLGNQ 418
+ G K+ +M G Q
Sbjct: 490 GFSEEGLKLYVSMRSNGVQ 508
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 107/468 (22%), Positives = 191/468 (40%), Gaps = 103/468 (22%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND--- 61
LHA V+K + + NS++ Y + A +F + + WN+++ Y+
Sbjct: 168 LHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYG 227
Query: 62 -------------------------FSDSG---EVLILFKQLIFEGIVADKITLVILFSA 93
FS G + L +F ++ +G + +T + SA
Sbjct: 228 PYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSA 287
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNM--ENALLLMYAKCKEMDEALRLFDEMGSRRNI 151
CA L +G H +A + +E+ L++ N L+ MYAKC +D A R
Sbjct: 288 CASTSDLKWG--AHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKR----------- 334
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
VF + + D + W S++ G V E+AL LF +M
Sbjct: 335 ---------------------VFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRS 373
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
V DE ++ ++L CS G L+H + +++ + A V A+I MY+KCG ++A
Sbjct: 374 SVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKA 433
Query: 272 LVTFYKTDCKDVVTWTTMIEG----------------------------LANY---GLGN 300
+ F ++ ++WT MI L+ Y G
Sbjct: 434 DLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSE 493
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
E L+++ M G++P+ TF + + AC ++ G Q+ + + + +
Sbjct: 494 EGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTH-ATKFGLSLNVSVANSI 552
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
V + SR GL+ +A+ + +D IS+ A+L+A +++ LG KV
Sbjct: 553 VTMYSRCGLIKEAKNTFDSIDDKD-LISWNAMLAA---FAQNGLGIKV 596
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 167/379 (44%), Gaps = 52/379 (13%)
Query: 91 FSACARLEK-LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
F C+ K H + +H GL+ L + N LL MY+ C +A ++F E R
Sbjct: 14 FKQCSFTHKSPHIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQET-HHR 72
Query: 150 NIVSLNILINGYIDMELVDLAREVFDE--IVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
NI + N +I + + A ++FDE + KD V W +M+ G + + E F
Sbjct: 73 NIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSL 132
Query: 208 MI----DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
MI D G D SV+ AC SL + + +H + + + ++ +++ MY
Sbjct: 133 MIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYV 192
Query: 264 KCGSLE-------------------------------EALVTFYKTDCKDVVTWTTMIEG 292
KCG ++ +AL F + +D V+W T+I
Sbjct: 193 KCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISI 252
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
+ +G G + L +F +M +G PN T+ SVL+AC + + G L R + R++
Sbjct: 253 FSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHAR---ILRMEH 309
Query: 353 TIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
+++ L+D+ ++ G L A+ K + D IS+ +L++ + F LG+
Sbjct: 310 SLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDH-ISWNSLITGVV---HFGLGE---- 361
Query: 411 NMMKLGNQSHEAYVLLSNF 429
+ + L NQ + V+L F
Sbjct: 362 DALILFNQMRRSSVVLDEF 380
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G + H TK L ++ V NS++ Y R L +A+ FD + +D+ SWN +++ +
Sbjct: 529 LGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFA 588
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
+V+ F+ ++ + I+ V + S C+ + + GK
Sbjct: 589 QNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGK 632
>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
Length = 1124
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 229/462 (49%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHA K ++ +V SL+ Y + L A+ +FD+MP W L++ Y D
Sbjct: 569 GEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMD 628
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D E + + + G+ D T V + +ACAR+ L G+TV A + G+ + +
Sbjct: 629 AGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFV 688
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
A + +Y KC EM +A REVFD++ KD
Sbjct: 689 ATAAVDLYVKCGEMAKA--------------------------------REVFDKMRHKD 716
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G P EAL+LF M EG+ PD + LSAC+ L L GR R
Sbjct: 717 AVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIR 776
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + + TALIDMY+KCGS EA V F + KD++ W MI GL G
Sbjct: 777 MVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI 836
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A + QME+ G+K N+ TF+ +L +C H+GLI +G + F M +Y + P IEH+ C+V
Sbjct: 837 AFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMV 896
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLLSRAGLL +A + + MP + ALL C + +L + V ++ L +
Sbjct: 897 DLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSG 956
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YV+LSN Y+ G W + A+ R +MK K P S ++ +
Sbjct: 957 NYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFE 998
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 2/177 (1%)
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
+ +++ SA L+ G +H L+ + V T+L+ +Y+KCG L A F +
Sbjct: 552 IPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEM 611
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338
V WT +I + G EA+ V G++P+ T V VL AC + G
Sbjct: 612 PHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATG- 670
Query: 339 QLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ R V ++ VDL + G + +A E M +D +++ A++
Sbjct: 671 ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDA-VAWGAMVGG 726
>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 171/501 (34%), Positives = 259/501 (51%), Gaps = 40/501 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLI-------------------------------HFYGR 30
GK LH+ + KTAL + ++ N LI FY +
Sbjct: 97 GKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLPNKTTRTWNTLLSFYSK 156
Query: 31 MALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI--FEGIVADKITLV 88
+F A LFD+MP R++ S+N+L+S E + F+++ G++ D+ TLV
Sbjct: 157 KGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQNGVGGLMLDEFTLV 216
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
L S C+ L+ + + + VH AT VG L + NAL+ Y KC E + + LF M
Sbjct: 217 SLVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSFCLFRSM-VE 275
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
++ VS ++ Y +D A +VF+E+ K V W +++ G VK + EALE+F +M
Sbjct: 276 KDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQM 335
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF---VKTALIDMYSKC 265
I EGV P + VSVL AC+S + + G+ VH I++ + + F V AL+DMY+KC
Sbjct: 336 IKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKC 395
Query: 266 GSLEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
G ++ A F KDVV+W T+I G A G G ++L VF +M I+PN TF+ V
Sbjct: 396 GDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGV 455
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE- 383
L+AC H+GL+ G +L M Y V+P H+ L+DLL R L +A I+ +P E
Sbjct: 456 LSACNHAGLVNAGLELLDSMERRYGVKPKSNHYALLIDLLGRKNRLEEAMCLIEKVPNEI 515
Query: 384 -DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442
+ + A+L C + +L +K A + L ++ YV+LSN YA G W++
Sbjct: 516 SNHIAMWGAVLGGCRVHGNLELARKAAEALFALEPENTGRYVMLSNIYAASGRWSDTNRI 575
Query: 443 RRNMKELQTRKKPGNSIIDLK 463
R MKE +K+P S I+LK
Sbjct: 576 RNVMKERGLKKEPAFSRIELK 596
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 171/384 (44%), Gaps = 58/384 (15%)
Query: 49 VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHC 108
VG NT+M NDFS + E F LI S C + L +GK +H
Sbjct: 61 VGERNTVMFHTNDFSSTIEK---FSSLI---------------SNCVSAKSLKHGKALHS 102
Query: 109 YATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168
K L + + N L+ +Y+KC + + FD++ + + N L++ Y + +
Sbjct: 103 QLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDL-PNKTTRTWNTLLSFYSKKGVFN 161
Query: 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID--EGVTPDEEVMVSVLSA 226
A ++FDE+ +++V + S++ G + + +EA++ F++M + G+ DE +VS++S
Sbjct: 162 QAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQNGVGGLMLDEFTLVSLVSN 221
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
CS L +++ R VH + + ALID Y KCG + F KD V+W
Sbjct: 222 CSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSW 281
Query: 287 TTM-------------------------------IEGLANYGLGNEALRVFYQMERKGIK 315
T+M I G G EAL VF+QM ++G+
Sbjct: 282 TSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGVL 341
Query: 316 PNEATFVSVLAACRHSGLITEG----CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY 371
P TFVSVL AC LI G CQ+ R G + F L+D+ ++ G +
Sbjct: 342 PRAQTFVSVLDACASEALIGRGKQVHCQIIR--GRSSDNLFNVYVFNALMDMYAKCGDMK 399
Query: 372 QAEEFIKIMPAEDKFISYKALLSA 395
AE ++M +S+ L++
Sbjct: 400 SAENLFEMMIHVKDVVSWNTLITG 423
>gi|225445472|ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
mitochondrial [Vitis vinifera]
Length = 773
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 160/528 (30%), Positives = 275/528 (52%), Gaps = 68/528 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH+ + K LD +++VGN+LI Y R +AR +FD+M +D+ SWN ++S Y
Sbjct: 195 GFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARRVFDEMRNKDLVSWNAMLSGYAQ 254
Query: 62 FSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+SG E +++F +++ EG+ D ++ SAC ++ G+ +H A K+G + +
Sbjct: 255 EGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVK 314
Query: 121 MENALLLMYAKCKEMDE--------------------------ALRLFDEM---GSRRNI 151
+ N L+ Y+KC+++++ A LF+EM G N
Sbjct: 315 VCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISISEEDATSLFNEMRRDGVYPND 374
Query: 152 VSL-----------------------------------NILINGYIDMELVDLAREVFDE 176
V+ N LI Y E + + +VF+E
Sbjct: 375 VTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEE 434
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS--NLQ 234
+ ++I+ W S++ G + +EAL+ F + E P+E SVLS+ +S +++
Sbjct: 435 LNYREIISWNSLISGYAQNGLWQEALQTFLSALMES-RPNEFTFGSVLSSIASAEAISMR 493
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
+G+ H IL+ + + V +AL+DMY+K GS+ E+L F +T K+ V WT +I A
Sbjct: 494 HGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIISAHA 553
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
+G + +F MER+G+KP+ TF++V+ AC G++ G QLF M + ++P+
Sbjct: 554 RHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLIEPSP 613
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
EH+ +VD+L RAG L +AEEF+ +P ++LL AC + D+ K+VA+++++
Sbjct: 614 EHYSSMVDMLGRAGRLKEAEEFVGQIPGGAGLSVLQSLLGACRIHGNVDMAKRVADDLIE 673
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ +YVL+SN YA +G W +VA+ R+ M+E RK+ G S +D+
Sbjct: 674 MEPMGSGSYVLMSNLYAEKGEWEKVAKIRKGMRERGVRKEIGFSWVDV 721
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 161/340 (47%), Gaps = 45/340 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +HA + S + V NSL++ Y + LF A V+F+ + D+ SWNT++S
Sbjct: 96 LGCQIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLS--- 152
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
F S + L ++ F G+ D +T + + C+ E +G +H K GL+ +
Sbjct: 153 GFQRSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVF 212
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MY++C + EA R+FDEM RN K
Sbjct: 213 VGNALITMYSRCCRLVEARRVFDEM---RN-----------------------------K 240
Query: 181 DIVLWRSMMHGCVK-AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W +M+ G + EA+ +F +M+ EG+ D +SAC + GR +
Sbjct: 241 DLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQI 300
Query: 240 HRFILQNNITQDAFVK--TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
H ++ I D VK LI YSKC +E+A + F ++VV+WTTMI
Sbjct: 301 HSLAVK--IGYDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISISE--- 355
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+A +F +M R G+ PN+ TFV ++ A L+ EG
Sbjct: 356 --EDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEG 393
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 137/303 (45%), Gaps = 40/303 (13%)
Query: 41 FDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVA--DKITLVILFSACARLE 98
D+ P + S N M + S E L LFK+ + G V D++T+ I+ AC
Sbjct: 35 LDQSPQTTIASLNRSMLTALRRNLSLEALDLFKKQLQWGFVGNIDQVTVAIVLKACCGDS 94
Query: 99 KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
KL G +H +A G + + N+L+ MY K
Sbjct: 95 KL--GCQIHAFAISSGFISHVTVPNSLMNMYCKA-------------------------- 126
Query: 159 NGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE 218
G D LV VF+ + + DIV W +++ G ++ ++AL +M GV D
Sbjct: 127 -GLFDRALV-----VFENLNNPDIVSWNTVLSG---FQRSDDALNFALRMNFTGVAFDAV 177
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
+VL+ CS +G +H IL+ + + FV ALI MYS+C L EA F +
Sbjct: 178 TCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARRVFDEM 237
Query: 279 DCKDVVTWTTMIEGLANYG-LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
KD+V+W M+ G A G G EA+ VF +M ++G+K + +F ++AC H G
Sbjct: 238 RNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELG 297
Query: 338 CQL 340
Q+
Sbjct: 298 RQI 300
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 116/276 (42%), Gaps = 51/276 (18%)
Query: 200 EALELFKKMIDEGVTP--DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
EAL+LFKK + G D+ + VL AC S L G +H F + + V +
Sbjct: 61 EALDLFKKQLQWGFVGNIDQVTVAIVLKACCGDSKL--GCQIHAFAISSGFISHVTVPNS 118
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
L++MY K G + ALV F + D+V+W T++ G + ++AL +M G+ +
Sbjct: 119 LMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSG---FQRSDDALNFALRMNFTGVAFD 175
Query: 318 EATFVSVLAACR-HSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAE 374
T +VLA C H G I G QL R + + E FV L+ + SR L +A
Sbjct: 176 AVTCTTVLAFCSDHEGFIF-GFQLHSR---ILKCGLDCEVFVGNALITMYSRCCRLVEAR 231
Query: 375 EFIKIMPAED-----------------------------------KFISYKALLSACITY 399
M +D +S+ +SAC
Sbjct: 232 RVFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHG 291
Query: 400 SEFDLGKKVANNMMKLGNQSHEAY--VLLSNFYALE 433
EF+LG+++ + +K+G +H VL+S + E
Sbjct: 292 KEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCE 327
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 155/456 (33%), Positives = 244/456 (53%), Gaps = 16/456 (3%)
Query: 12 TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLIL 71
+ +D +I N L+ Y R DAR LFD+MP RD SWN +++ Y E L
Sbjct: 209 SKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRL 268
Query: 72 FKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME---NALLLM 128
F++L + A +V F L++ AT++ E E NA++
Sbjct: 269 FEELPIRDVFA-WTAMVSGFVQNGMLDE----------ATRIFEEMPEKNEVSWNAMIAG 317
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
Y + +++++A LFD+M SR N S N ++ GY +D A+ +FDE+ +D + W +M
Sbjct: 318 YVQSQQIEKARELFDQMPSR-NTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAM 376
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ G ++ Q EEAL LF KM +G + + LS+C+ ++ L+ G+ +H +++
Sbjct: 377 ISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGF 436
Query: 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
AL+ MY KCGS+EEA F KD+V+W TMI G A +G G EAL +F
Sbjct: 437 QTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFES 496
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
M + IKP++ T V VL+AC H+G + +G + F M Y + +H+ C++DLL RAG
Sbjct: 497 M-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAG 555
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428
L +A +K MP ++ ALL A + + +LG+K A + ++ + YVLLSN
Sbjct: 556 RLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSN 615
Query: 429 FYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YA G W EV E R M++ +K PG S +++++
Sbjct: 616 LYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQN 651
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 165/330 (50%), Gaps = 17/330 (5%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
D D+ N ++ Y + + AR LF++MP +DV SWN ++S + E +F Q
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQ 178
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+ +V ++I+ L SA + ++ + + + +K +++ + N L+ Y + K
Sbjct: 179 M----LVKNEISWNGLLSAYVQNGRIEDARRL--FDSK--MDWEIVSWNCLMGGYVRKKR 230
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+D+A LFD M R I S NI+I GY L+ AR +F+E+ +D+ W +M+ G V+
Sbjct: 231 LDDARSLFDRMPVRDKI-SWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQ 289
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
+EA +F++M ++ +E ++++ ++ R + + N +
Sbjct: 290 NGMLDEATRIFEEMPEK----NEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSS---- 341
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
++ Y++CG++++A + F + +D ++W MI G A G EAL +F +M+R G
Sbjct: 342 WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGG 401
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRM 344
N + L++C + G QL R+
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRL 431
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 139/327 (42%), Gaps = 65/327 (19%)
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N + Y + + + AL +F+ M RR+ V+ N +I+GY+ D AR+VF+++ D+D+
Sbjct: 64 NRKISAYMRKGQCESALSVFNGM-RRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDL 122
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP---------------------DEEVMV 221
+ W M+ G VK A LF +M ++ V D+ ++
Sbjct: 123 ISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVK 182
Query: 222 SVLSACSSLSN-LQYGRL--VHRF--------ILQNNITQDAFVKTALID---------- 260
+ +S LS +Q GR+ R I+ N +V+ +D
Sbjct: 183 NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMP 242
Query: 261 ------------MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
Y++ G L EA F + +DV WT M+ G G+ +EA R+F +
Sbjct: 243 VRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEE 302
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
M K NE ++ +++A S I + +LF +M + +V ++ G
Sbjct: 303 MPEK----NEVSWNAMIAGYVQSQQIEKARELFDQM-----PSRNTSSWNTMVTGYAQCG 353
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSA 395
+ QA+ MP D IS+ A++S
Sbjct: 354 NIDQAKILFDEMPQRD-CISWAAMISG 379
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 18/219 (8%)
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
IVD DIV W + ++ Q E AL +F M T M+S LSN ++
Sbjct: 55 IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRS-TVTYNAMIS-----GYLSNNKFD 108
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
R + + +D ++ Y K G+L A F + KDVV+W M+ G A
Sbjct: 109 --CARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G EA ++F QM + NE ++ +L+A +G I + +LF ++ I
Sbjct: 167 GFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDS-----KMDWEIVS 217
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ CL+ R L A MP DK IS+ +++
Sbjct: 218 WNCLMGGYVRKKRLDDARSLFDRMPVRDK-ISWNIMITG 255
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 27/228 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH + K + GN+L+ YG+ +A +F+ + +D+ SWNT+++ Y
Sbjct: 423 LGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYA 482
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF+ + I D +TLV + SAC+ H G+EY +
Sbjct: 483 RHGFGKEALALFESMKMT-IKPDDVTLVGVLSACS-----------HTGFVDKGMEYFNS 530
Query: 121 M-------ENA-----LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDME 165
M NA ++ + + +DEAL L M + + L+ + D E
Sbjct: 531 MYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTE 590
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
L + A E E+ + ++ + + + + E E+ KM D+GV
Sbjct: 591 LGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGV 638
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 247/447 (55%), Gaps = 2/447 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
++Y N ++ Y ++ +AR LFD+M +DV SWNT++ Y E + L++
Sbjct: 128 NLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFR 187
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+ + + + C +L++L K VH G L + ++++ Y+KC EM
Sbjct: 188 RLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMR 247
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A LFDEM ++I + +++GY ++ A E+F ++ +K+ V W +++ G +
Sbjct: 248 CARTLFDEM-LVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNS 306
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
EAL+ F KM+ G+ P++ S L AC+S++ L++G+ VH ++++ + V +
Sbjct: 307 LGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVS 366
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
+LIDMYSKCG LE + F+ K DVV W TMI LA G G +A+++F M G+K
Sbjct: 367 SLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLK 426
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
P+ TF+ +L+AC HSGL+ EG + F+ M + V P EH+ CL+DLL RAG +
Sbjct: 427 PDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVN 486
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
++ M + + ALL C ++ +LG+KVA +++L QS AYV L++ YA G
Sbjct: 487 ELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGK 546
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDL 462
W V + R M E RK+ G S ID+
Sbjct: 547 WESVEKVRELMDEKFIRKERGISWIDV 573
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 174/393 (44%), Gaps = 41/393 (10%)
Query: 61 DFSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
D S G E L +L GI V L CA+ + GK VH + G +
Sbjct: 36 DLSSQGRLPEALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKR 95
Query: 118 MLNM-ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ N L+ MY +C EA ++FD+M S RN+ S N ++ GY + V+ AR++FD
Sbjct: 96 PTTIVANHLIGMYFECGRDVEARKVFDKM-SVRNLYSWNHMLAGYAKLGDVNNARKLFDR 154
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFK--KMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
+++KD+V W +++ K EA+ L++ + +D G VL C L LQ
Sbjct: 155 MMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFS--FAGVLILCVKLKELQ 212
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
+ VH +L + + ++++D YSKCG + A F + KD+ WTT++ G A
Sbjct: 213 LAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYA 272
Query: 295 NYG-------------------------------LGNEALRVFYQMERKGIKPNEATFVS 323
+G LG+EAL F +M + GI P + TF S
Sbjct: 273 KWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSS 332
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
L AC + G Q+ + Y TI L+D+ S+ G+L + +M +
Sbjct: 333 CLCACASIAALKHGKQVHGYLIRTYFRCNTIV-VSSLIDMYSKCGMLEASCCVFHLMGNK 391
Query: 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ + ++SA + ++ N+M++ G
Sbjct: 392 QDVVVWNTMISALAQNGHGEKAMQMFNDMVESG 424
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 33/279 (11%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFK 73
L DI+ +++ Y + A LF +MP ++ SW+ L+S Y S E L F
Sbjct: 257 LVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFT 316
Query: 74 QLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
+++ GI ++ T ACA + L +GK VH Y + + ++L+ MY+KC
Sbjct: 317 KMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCG 376
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
++ + +F MG+++++ V+W +M+
Sbjct: 377 MLEASCCVFHLMGNKQDV-------------------------------VVWNTMISALA 405
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDA 252
+ E+A+++F M++ G+ PD + +LSACS +Q G R + + D
Sbjct: 406 QNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQ 465
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMI 290
LID+ + G E + CK D W+ ++
Sbjct: 466 EHYACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALL 504
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 214/360 (59%), Gaps = 2/360 (0%)
Query: 105 TVHCYATKVGLEYMLNMENALLLMYAKC-KEMDEALRLFDEMGSRRNIVSLNILINGYID 163
VH +A K+GL L + NAL+ ++A + +AL L S + + N LI Y
Sbjct: 231 AVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASV-DASTFNTLITAYAR 289
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223
V AR +FDE+ ++ V W +M++G V+A EAL LF +M +GV PD+ V+V V
Sbjct: 290 AGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGV 349
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
L+AC+ L L+ G+ VH ++ NNI F+ TAL+DMY+KCG ++ A+ F K+V
Sbjct: 350 LAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNV 409
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
+ WTTMI+GLA +G G+EAL +F QMER G+KP++ F+ L AC H+GL+ +G +LF
Sbjct: 410 LAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDS 469
Query: 344 MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
M Y ++P IEH+ C+VDLL+R GLL +A E ++ MP + + + AL++ C + +
Sbjct: 470 MVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVE 529
Query: 404 LGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
L + V + ++L AYVLL N YA G E R M+E K PG S +++K
Sbjct: 530 LAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIK 589
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 131/288 (45%), Gaps = 42/288 (14%)
Query: 11 KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLI 70
+TA D N+LI Y R TDAR LFD+MP R+ SW+ +++ Y D E L
Sbjct: 270 RTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALG 329
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
LF ++ +G+ D LV + +ACA+L L GK VH Y + + + AL+ MYA
Sbjct: 330 LFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYA 389
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
KC EM A+ EVF + +K+++ W +M+
Sbjct: 390 KCGEMQLAM--------------------------------EVFKVMKEKNVLAWTTMIK 417
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQ 245
G + EALELF +M GV PD+ + L AC+ + GR +V ++ ++
Sbjct: 418 GLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIK 477
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEG 292
I ++D+ ++ G L EA K K D + W ++ G
Sbjct: 478 PKIEH----YGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAG 521
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 42/221 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H ++ + +++G +L+ Y + A +F M ++V +W T++
Sbjct: 362 GKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAM 421
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF Q+ G+ D I + AC T GL
Sbjct: 422 HGRGSEALELFSQMERLGVKPDDIAFIGALCAC----------------THTGL------ 459
Query: 122 ENALLLMYAKCKEMDEALRLFDEM----GSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+D+ LFD M G + I +++ L++ ARE+ +++
Sbjct: 460 -------------VDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKM 506
Query: 178 VDK-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217
K D ++W ++M GC K E A + K I+ + PD+
Sbjct: 507 PMKPDALIWGALMAGCRFHKNVELAEYVVKHWIE--LEPDK 545
>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
Length = 714
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 151/458 (32%), Positives = 242/458 (52%), Gaps = 33/458 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA V K+ SD ++G+ L+ Y ++ DA+ LFD+MP RD+ SWN+LMS +
Sbjct: 161 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGY 220
Query: 65 SGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
G L F ++ E G +++TL+ + SACA + L GK++H K+G+ + N
Sbjct: 221 LGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVN 280
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
+L+ MY K + +D A ++F+E+ + +V
Sbjct: 281 SLINMYGK--------------------------------LGFLDAASQLFEEMPVRSLV 308
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W SM+ E+ ++LF M G+ PD+ MV++L AC+ + +H +I
Sbjct: 309 SWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYI 368
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ D + TAL+++Y+K G L + F + +D + WT M+ G A + G EA+
Sbjct: 369 HRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAI 428
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
++F M ++G++ + TF +L+AC HSGL+ EG + F M VYRV+P ++H+ C+VDL
Sbjct: 429 KLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDL 488
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L R+G L A E IK MP E + ALL AC Y +LGK+VA ++ L H Y
Sbjct: 489 LGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNY 548
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
++LSN Y+ G W ++ R MKE + + PG S I+
Sbjct: 549 IMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIE 586
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/380 (23%), Positives = 160/380 (42%), Gaps = 69/380 (18%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH V K + V NSLI+ YG++ A LF++MP R + SWN+++ I+N
Sbjct: 260 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 319
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + + LF + GI D+ T+V L AC +++H Y + G + +
Sbjct: 320 NGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIII 379
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ALL +YAK ++ + ++F+EI D+D
Sbjct: 380 ATALLNLYAKLGRLNA--------------------------------SEDIFEEIKDRD 407
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W +M+ G EA++LF M+ EGV D +LSACS ++ G+ +
Sbjct: 408 TIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGK---K 464
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ I + + +D YS M++ L G +
Sbjct: 465 YF---EIMSEVYRVEPRLDHYS------------------------CMVDLLGRSGRLED 497
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCL 360
A + M ++P+ + ++L ACR G + G ++ ++ + P+ +++ L
Sbjct: 498 AYELIKSMP---MEPSSGVWGALLGACRVYGNVELGKEVAEQL---LSLDPSDHRNYIML 551
Query: 361 VDLLSRAGLLYQAEEFIKIM 380
++ S AGL A + +M
Sbjct: 552 SNIYSAAGLWRXASKVRXLM 571
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 93/180 (51%), Gaps = 7/180 (3%)
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
+ ++ S++ A SS +++ Y +H ++++ D F+ L+ MY K G E+A F
Sbjct: 139 DSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFD 198
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME-RKGIKPNEATFVSVLAACRHSGLIT 335
+ +D+V+W +++ GL+ G L F +M G +PNE T +SV++AC G +
Sbjct: 199 EMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALD 258
Query: 336 EGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
EG L G V ++ + + V L+++ + G L A + + MP +S+ +++
Sbjct: 259 EGKSLH---GVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMV 314
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 159/499 (31%), Positives = 257/499 (51%), Gaps = 64/499 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H ++ L D++VGN+++ Y + +A +F +M F+DV SWN +++ Y+
Sbjct: 383 GRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQ 442
Query: 62 --------------------------------FSDSG---EVLILFKQLIFEGIVADKIT 86
++ G E L +F+Q+ G + +T
Sbjct: 443 AGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVT 502
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
LV L SAC + L +GK HCYA K ++LN++ + G
Sbjct: 503 LVSLLSACVSVGALLHGKETHCYAIK----FILNLDGP-------------------DPG 539
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIV--DKDIVLWRSMMHGCVKAKQPEEALEL 204
+ ++ +N LI+ Y + ++AR++FD + D+D+V W M+ G + AL+L
Sbjct: 540 AD-DLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQL 598
Query: 205 FKKM--IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA-FVKTALIDM 261
F M +D+ + P++ + L AC+ L+ L++GR VH ++L+N FV LIDM
Sbjct: 599 FSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDM 658
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
YSK G ++ A + F ++ V+WT+++ G +G G +ALRVF +M + + P+ TF
Sbjct: 659 YSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITF 718
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
+ VL AC HSG++ G F RM + V P EH+ C+VDL RAG L +A + I MP
Sbjct: 719 LVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMP 778
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
E + + ALLSAC +S +LG+ AN +++L + + +Y LLSN YA W +VA
Sbjct: 779 MEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVAR 838
Query: 442 ARRNMKELQTRKKPGNSII 460
R MK +K+PG S I
Sbjct: 839 IRYTMKRTGIKKRPGCSWI 857
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 139/436 (31%), Positives = 231/436 (52%), Gaps = 34/436 (7%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDF 62
HA V+++ S+++V N+++ YG+ A +FD + R D+ SWN+++S Y
Sbjct: 282 HATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWA 341
Query: 63 SDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
SD+ L LF ++ +++ D I+LV + ACA L G+ VH ++ + GL + +
Sbjct: 342 SDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFV 401
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK- 180
NA++ MYAKC +M+EA ++F M +++VS N ++ GY ++ A +F+ + ++
Sbjct: 402 GNAVVDMYAKCGKMEEANKVFQRM-KFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEEN 460
Query: 181 ---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
D+V W +++ G + Q EAL++F++M D G P+ +VS+LSAC S+ L +G+
Sbjct: 461 IELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGK 520
Query: 238 LVH----RFILQ----NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK--DVVTWT 287
H +FIL + D V LIDMY+KC S E A F K DVVTWT
Sbjct: 521 ETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWT 580
Query: 288 TMIEGLANYGLGNEALRVFYQMER--KGIKPNEATFVSVLAACRHSGLITEGCQ----LF 341
MI G A +G N AL++F M + K IKPN+ T L AC + G Q +
Sbjct: 581 VMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVL 640
Query: 342 RRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
R G ++ FV CL+D+ S++G + A+ MP + +S+ +L++ +
Sbjct: 641 RNFYG------SVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNA-VSWTSLMTGYGMH 693
Query: 400 SEFDLGKKVANNMMKL 415
+ +V + M K+
Sbjct: 694 GRGEDALRVFDEMRKV 709
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 157/342 (45%), Gaps = 33/342 (9%)
Query: 37 ARVLFDKMPFR--DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSAC 94
A +L +++P V WN L+ +V L++Q+ G D T +F AC
Sbjct: 210 AILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKAC 269
Query: 95 ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSL 154
A L L G ++H ++ G + + NA++ MY KC + A +FD++ R I
Sbjct: 270 ANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDL-CHRGI--- 325
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV- 213
+D+V W S++ + A AL LF KM +
Sbjct: 326 -------------------------QDLVSWNSVVSAYMWASDANTALALFHKMTTRHLM 360
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
+PD +V++L AC+SL+ GR VH F +++ + D FV A++DMY+KCG +EEA
Sbjct: 361 SPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANK 420
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F + KDVV+W M+ G + G AL +F +M + I+ + T+ +V+ G
Sbjct: 421 VFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQ 480
Query: 334 ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
E +FR+M +P + V L+ G L +E
Sbjct: 481 GCEALDVFRQMCDC-GSRPNVVTLVSLLSACVSVGALLHGKE 521
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 10/220 (4%)
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W ++ + P + L+++M G TPD V AC++LS+L G +H
Sbjct: 224 VFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHA 283
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTF---YKTDCKDVVTWTTMIEGLANYGL 298
+ ++ + FV A++ MY KCG+L A F +D+V+W +++
Sbjct: 284 TVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASD 343
Query: 299 GNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
N AL +F++M R + P+ + V++L AC G Q+ G R + F
Sbjct: 344 ANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVH---GFSIRSGLVDDVF 400
Query: 358 V--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
V +VD+ ++ G + +A + + M +D +S+ A+++
Sbjct: 401 VGNAVVDMYAKCGKMEEANKVFQRMKFKD-VVSWNAMVTG 439
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 149/463 (32%), Positives = 241/463 (52%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G G+ K YV LI Y + AR+LF ++ D+ ++N ++S +
Sbjct: 227 VGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFT 286
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + LF++L+F G T+V L + LH ++H + K G+
Sbjct: 287 ANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPT 346
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ A +Y K E +DLAR +FDE +K
Sbjct: 347 VSTAFTAIYNKLNE--------------------------------IDLARHLFDESPEK 374
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V W +M+ G + E A+ LFK+M+ TP+ + ++LSAC+ L +L +G+ VH
Sbjct: 375 TVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVH 434
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I N+ + +V TAL+DMY+KCG++ EA F K+ VTW TMI G +G G+
Sbjct: 435 HLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGH 494
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL+++ +M G P+ TF+SVL AC H+GL+ EG ++F M YR++P IEH+ C+
Sbjct: 495 EALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACM 554
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L R+G L +A EFIK MP E + LL AC+ + + D+ + + + +L S
Sbjct: 555 VDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSV 614
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVLLSN Y++E ++ + A R+ +K+ + K PG ++I++
Sbjct: 615 GYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVN 657
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/430 (24%), Positives = 195/430 (45%), Gaps = 41/430 (9%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--IYND- 61
LHAH S+++VG++L+ Y + + AR +FD MP RD WNT+++ + N
Sbjct: 130 LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCC 189
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
F DS + LF++++ +G+ D T+ + A A L++L G + C A K+G + +
Sbjct: 190 FDDS---IQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYV 246
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
L+ +Y+KC +++ A LF RR I D
Sbjct: 247 LTGLISLYSKCGDVNTARLLF-----RR---------------------------INRPD 274
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ + +M+ G E +++LF++++ G +V ++ S +L +H
Sbjct: 275 LIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHG 334
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F +++ I + V TA +Y+K ++ A F ++ K VV W MI G G
Sbjct: 335 FCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTET 394
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ +F +M + PN T ++L+AC G ++ G + + ++P I LV
Sbjct: 395 AISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFG-KWVHHLIKSENLEPNIYVSTALV 453
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+ ++ G + +A + M +E +++ ++ + K+ N M+ LG
Sbjct: 454 DMYAKCGNISEAWQLFDSM-SEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNP-S 511
Query: 422 AYVLLSNFYA 431
A LS YA
Sbjct: 512 AVTFLSVLYA 521
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 4/183 (2%)
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
G R ++ +L L D AR +F + DI L+ ++ G P ++ L+
Sbjct: 39 GYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLY 98
Query: 206 KKMI-DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
+ + ++PD ++ACS+ +L L+H + + + FV +AL+D+Y K
Sbjct: 99 THLRRNTNLSPDNFTYAFAVAACSNDKHLM---LLHAHSIIDGYGSNVFVGSALVDLYCK 155
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
+ A F +D V W TMI GL ++++++F +M G++ + +T +V
Sbjct: 156 FSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAV 215
Query: 325 LAA 327
L A
Sbjct: 216 LPA 218
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 158/462 (34%), Positives = 252/462 (54%), Gaps = 33/462 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H K D D+YVG +L+ Y + +A+ F++MP D+ W+ ++S Y
Sbjct: 223 VGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYA 282
Query: 61 DFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
S E L LF ++ +V + T + ACA L L+ G +H KVGL+ +
Sbjct: 283 QSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNV 342
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NAL+ +YAKC E++ +++LF GS +
Sbjct: 343 FVSNALMDVYAKCGEIENSVKLF--TGS------------------------------TE 370
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K+ V W +++ G V+ E+AL LF M+ + P E SVL A +SL L+ GR +
Sbjct: 371 KNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQI 430
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ +D+ V +LIDMY+KCG +++A +TF K D +D V+W +I G + +GLG
Sbjct: 431 HSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLG 490
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL +F M++ KPN+ TFV VL+AC ++GL+ +G F+ M Y ++P IEH+ C
Sbjct: 491 MEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTC 550
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+V LL R+G +A + I +P + + ++ALL AC+ + DLGK A ++++ Q
Sbjct: 551 MVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQD 610
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+VLLSN YA W VA R+NMK+ + +K+PG S ++
Sbjct: 611 DATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVE 652
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/428 (26%), Positives = 182/428 (42%), Gaps = 49/428 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH H+ K D++ N L++ Y DA LFD+MP + S+ TL ++
Sbjct: 22 GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L +L EG ++ L ++ +VH Y K+G + +
Sbjct: 82 SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFV 141
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ Y+ C VD AR+VFD I KD
Sbjct: 142 GTALIDAYSVCGN--------------------------------VDAARQVFDGIYFKD 169
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W M+ + E++L LF +M G P+ + + L +C+ L + G+ VH
Sbjct: 170 MVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHG 229
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
L+ +D +V AL+++Y+K G + EA F + D++ W+ MI A E
Sbjct: 230 CALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKE 289
Query: 302 ALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV-- 358
AL +F +M + + PN TF SVL AC L+ G Q+ V +V FV
Sbjct: 290 ALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIH---SCVLKVGLDSNVFVSN 346
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVAN---NMM 413
L+D+ ++ G + E +K+ E +++ ++ + Y + G+K N NM+
Sbjct: 347 ALMDVYAKCG---EIENSVKLFTGSTEKNEVAWNTII---VGYVQLGDGEKALNLFSNML 400
Query: 414 KLGNQSHE 421
L Q E
Sbjct: 401 GLDIQPTE 408
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 150/459 (32%), Positives = 253/459 (55%), Gaps = 2/459 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD-ARVLFDKMPFRDVGSWNTLMSIYNDFS 63
+HAH+ KT L + ++ F + + A +LF +P ++ WNT++ ++ S
Sbjct: 44 IHAHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWNTIIRGFSRSS 103
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
+ LF ++ ++ ++T +F A A+L + G +H K+GLE ++N
Sbjct: 104 TPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQN 163
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
++ MYA + EA R+FDE+ ++V+ N +I G VD +R +FD + + V
Sbjct: 164 TIIYMYANSGLLSEARRVFDEL-VDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRV 222
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W SM+ G V+ K+ EALELF+KM E V P E MVS+LSAC+ L L++G VH ++
Sbjct: 223 TWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWVHDYV 282
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ + + V TA+IDMY KCG + +A+ F + + + W ++I GLA G +A+
Sbjct: 283 KRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAI 342
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
F ++E +KP+ +F+ VL AC++ G + + F M Y ++P+I+H+ C+V++
Sbjct: 343 EYFSKLEASDLKPDHVSFIGVLTACKYIGAVGKARDYFSLMMNKYEIEPSIKHYTCMVEV 402
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L +A LL +AE+ IK MP + FI + +LLS+C + ++ K+ A + +L Y
Sbjct: 403 LGQAALLEEAEQLIKGMPLKADFIIWGSLLSSCRKHGNVEIAKRAAQRVCELNPSDASGY 462
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+L+SN A + E E R M+E K+PG S I+L
Sbjct: 463 LLMSNVQAASNQFEEAMEQRILMRERLAEKEPGCSSIEL 501
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 134/333 (40%), Gaps = 73/333 (21%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDAR----------------------- 38
G LH V K L+ D ++ N++I+ Y L ++AR
Sbjct: 143 GAQLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAK 202
Query: 39 --------VLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
LFD MP R +WN+++S Y E L LF+++ E + + T+V L
Sbjct: 203 CGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSL 262
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA L L +G+ VH Y + E + + A++ MY KC + +A+
Sbjct: 263 LSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAI----------- 311
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
EVF+ + + W S++ G +A+E F K+
Sbjct: 312 ---------------------EVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEA 350
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQNNITQDAFVKTALIDMYSKC 265
+ PD + VL+AC + + R +++++ ++ +I T ++++ +
Sbjct: 351 SDLKPDHVSFIGVLTACKYIGAVGKARDYFSLMMNKYEIEPSIKH----YTCMVEVLGQA 406
Query: 266 GSLEEALVTFYKTDCK-DVVTWTTMIEGLANYG 297
LEEA K D + W +++ +G
Sbjct: 407 ALLEEAEQLIKGMPLKADFIIWGSLLSSCRKHG 439
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 164/490 (33%), Positives = 249/490 (50%), Gaps = 38/490 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
KG +++ + AL IY S I G MA A LF + D WNT++
Sbjct: 39 KGFNSNTS--ALRELIYA--SSIAISGTMAY---AHQLFPHITEPDTFMWNTMIRGSAQS 91
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ L+ Q+ + DK T + AC RL + G VH ++G E +
Sbjct: 92 PSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVR 151
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSR------------------------------RNIV 152
N L+ +A C ++ A LFD R +++V
Sbjct: 152 NTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLV 211
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
S N++I GY ++ AR++FDE+ +D+V W +M+ G V ++ALE+F++M G
Sbjct: 212 SWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVG 271
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ-DAFVKTALIDMYSKCGSLEEA 271
PDE M+S+LSAC+ L +L G+ +H I + + ALIDMY+KCGS+ A
Sbjct: 272 ELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRA 331
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
L F KDV TW +++ GLA +G +++ +F +M + I+P+E TFV VL AC H+
Sbjct: 332 LEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHA 391
Query: 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKA 391
G + EG Q F M Y ++P I H+ C+VDLL RAGLL +A +FI M E I ++
Sbjct: 392 GRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRT 451
Query: 392 LLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451
LL AC + +LG++ ++K+ + YVLLSN YA G W V + R+ M +
Sbjct: 452 LLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGV 511
Query: 452 RKKPGNSIID 461
RK+ G S+I+
Sbjct: 512 RKEAGCSLIE 521
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/400 (23%), Positives = 152/400 (38%), Gaps = 128/400 (32%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHF-------------------------------YG 29
MG G+H V + +S+ +V N+LI+F Y
Sbjct: 131 MGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYA 190
Query: 30 RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD------------------------- 64
R AR LFD+MP +D+ SWN +++ Y +
Sbjct: 191 RRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAG 250
Query: 65 ------SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL-EY 117
+ + L +F+++ G + D++T++ L SAC L L G+ +HC +++G +
Sbjct: 251 YVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDL 310
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + NAL+ MYAKC + AL EVF +
Sbjct: 311 SVLLGNALIDMYAKCGSIVRAL--------------------------------EVFQGM 338
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+KD+ W S++ G E+++ LF +M + PDE V VL ACS ++ GR
Sbjct: 339 REKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGR 398
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
++ +D + I Y M++ L G
Sbjct: 399 QYF------DLMRDEYNIEPNIRHYG------------------------CMVDLLGRAG 428
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
L NEA M+ I+PN + ++L ACR G + G
Sbjct: 429 LLNEAFDFIDTMK---IEPNAIVWRTLLGACRIHGNVELG 465
>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
Length = 768
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 161/466 (34%), Positives = 247/466 (53%), Gaps = 43/466 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDA-RVLFDKMPFRDVGSWNTLMSIY 59
+G+ +H + K L+ D +G +L+ FY DA RV G N ++
Sbjct: 290 VGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVC--------KGVVNPCLNAL 341
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N L + LI G + D ++F+ + + Y
Sbjct: 342 NS---------LIEGLISMGRIEDA---ELVFNGMTEMNPVSY----------------- 372
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N ++ YA +MD++ RLF++M R I S N +I+ Y +D A E+F+E +
Sbjct: 373 ---NLMIKGYAVGGQMDDSKRLFEKMPCR-TIFSSNTMISVYSRNGEIDKALELFEETKN 428
Query: 180 -KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
KD V W SM+ G + + QPEEAL+L+ M + ++ ACS L +LQ G+L
Sbjct: 429 EKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQGQL 488
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H +++ + +V T+LIDMYSKCGS+ EA +F +V WT +I G A +GL
Sbjct: 489 LHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGL 548
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G+EA+ +F M +G+ PN ATFV VL+AC +GL+ EG ++F M Y V PT+EH+
Sbjct: 549 GSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYA 608
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDLL R+G + +AEEFIK MP E + + ALLSAC + + ++G++VA M +
Sbjct: 609 CVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPK 668
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+YV+LSN YA G W E R+ ++ + +K PG S I+L +
Sbjct: 669 PISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNN 714
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 198/410 (48%), Gaps = 22/410 (5%)
Query: 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL 75
S+I N I Y + + AR LFD+MP R V SWNT++S Y+ E L L +
Sbjct: 70 SEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSM 129
Query: 76 IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135
+ + T + S CARL L GK +HC K G E + +ALL YA C E+
Sbjct: 130 HRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEI 189
Query: 136 DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK- 194
EA R+FD + RRN V ++++ GY+ ++D A VF ++ +D+V W +++ G K
Sbjct: 190 GEARRVFDVL-VRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKN 248
Query: 195 AKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ALE+F+ M+ G TP+E V+ AC L L GR VH +++ + D
Sbjct: 249 GDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPS 308
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVV-----TWTTMIEGLANYGLGNEALRVFYQ 308
+ AL++ Y +C ++++AL CK VV ++IEGL + G +A VF
Sbjct: 309 IGGALVEFYCECEAIDDALRV-----CKGVVNPCLNALNSLIEGLISMGRIEDAELVFNG 363
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
M N ++ ++ G + + +LF +M TI ++ + SR G
Sbjct: 364 MTEM----NPVSYNLMIKGYAVGGQMDDSKRLFEKMPC-----RTIFSSNTMISVYSRNG 414
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
+ +A E + E +++ +++S I + + K+ M +L Q
Sbjct: 415 EIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQ 464
>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 244/462 (52%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK HA + L +D+ N LI+ Y + AR +FD+MP R + SWNT++
Sbjct: 83 GKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQ 142
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L L Q+ EG + T+ + ACA L + +H +A K ++ + +
Sbjct: 143 NGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFV 202
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ALL +YAKC M +A+ +F+ M D+
Sbjct: 203 ATALLDVYAKCGLMKDAVCVFESMP--------------------------------DRS 230
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W SM G V+ + E+AL LF+K + G+ D+ +M SV+ AC+ L+ + G+ V+
Sbjct: 231 VVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNA 290
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ ++ + FV ++LIDMY+KCG +EE+ F + ++VV W MI GL+ + E
Sbjct: 291 LLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLE 350
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
+ +F +M++ G+ PN+ TFVSVL+AC H GL+ +G + F M + + P + H+ C+V
Sbjct: 351 VMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMV 410
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D LSRAG +++A + I +P + +LL++C T+ +L + A + + +
Sbjct: 411 DTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSG 470
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+LLSN YA G W EVA+ R+ +KE +K+ G S I++K
Sbjct: 471 NYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIK 512
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 32/247 (12%)
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
CA+ + L GK H +GL+ L N L+ MY+KC +D A ++FDEM SR
Sbjct: 74 CAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSR----- 128
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
+V W +M+ + + EAL+L +M EG
Sbjct: 129 ---------------------------SLVSWNTMIGSLTQNGEENEALDLLLQMQREGT 161
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
E + SVL AC++ L +L+H F ++ + + FV TAL+D+Y+KCG +++A+
Sbjct: 162 PFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVC 221
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F + VVTW++M G + +AL +F + G+K ++ SV+ AC
Sbjct: 222 VFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAA 281
Query: 334 ITEGCQL 340
+ EG Q+
Sbjct: 282 MIEGKQV 288
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
+L C+ L G+ H IL + D LI+MYSKCGS++ A F + +
Sbjct: 70 ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
+V+W TMI L G NEAL + QM+R+G +E T SVL AC ++E CQL
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSE-CQLLH 188
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
+ + L+D+ ++ GL+ A + MP
Sbjct: 189 AFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP 227
>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
Length = 1108
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 233/442 (52%), Gaps = 34/442 (7%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
+LI +GR AR +FD+M DV SW ++S + D EV LF+++ EG++
Sbjct: 576 TALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVI 635
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
DK TL C L GK +H T++GLE + +ENALL MY+ C + EAL
Sbjct: 636 PDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSF 695
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
F+ M +R D+V W M +A +EA
Sbjct: 696 FETMKAR--------------------------------DLVSWNIMSAAYAQAGLAKEA 723
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
+ LF+ M EGV PD+ + L+ + + G+L H ++ + D V T L+ +
Sbjct: 724 VLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSDVSVATGLVKL 783
Query: 262 YSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
Y+KCG L+EA ++ ++ C+ VV +I LA +G EA+++F++M+++G++P+ AT
Sbjct: 784 YAKCGKLDEA-ISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVAT 842
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
VS+++AC H+G++ EGC F M + + PT+EH+ C VDLL RAG L AE+ I+ M
Sbjct: 843 LVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKM 902
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440
P ED + + +LL C + +LG++ A +++L + A+V+LSN Y G W +
Sbjct: 903 PFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDAD 962
Query: 441 EARRNMKELQTRKKPGNSIIDL 462
R+ + + + PG S +++
Sbjct: 963 VDRKKLLDQNVKNAPGMSWLEI 984
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/441 (25%), Positives = 195/441 (44%), Gaps = 70/441 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR-DVGSWNTLMSIYN 60
+ H + ++ D+ VGN++I Y + F+ A +F ++ ++ DV SWNT++
Sbjct: 354 ARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASE 413
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE------KLH------------- 101
D G+V+ F ++ GI +K++ + + +AC+ E K+H
Sbjct: 414 DRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVES 473
Query: 102 ---------YGKTVHCYATKVGLEYM------LNMENALLLMYAKCKEMDEALRLFDEM- 145
YGK ++ + M L N +L YA+ EA EM
Sbjct: 474 SVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEML 533
Query: 146 --------------------GSRRNIVSLNILINGY----IDMELVDL---------ARE 172
++ + IL +GY ++ L+ + AR
Sbjct: 534 QGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACLETALISMHGRCRELEQARS 593
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
VFDE+ D+V W +M+ + + +E LF++M EGV PD+ + + L C +
Sbjct: 594 VFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTT 653
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L G+++H + + + D V+ AL++MYS CG EAL F +D+V+W M
Sbjct: 654 LGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAA 713
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
A GL EA+ +F M+ +G+KP++ TF + L S L+++G +LF + +
Sbjct: 714 YAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDG-KLFHGLAAESGLDS 772
Query: 353 TIEHFVCLVDLLSRAGLLYQA 373
+ LV L ++ G L +A
Sbjct: 773 DVSVATGLVKLYAKCGKLDEA 793
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 157/341 (46%), Gaps = 44/341 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK H + L+ +++GN LI+ Y R +A +F KM R+V SW L+S
Sbjct: 44 GKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQ 103
Query: 62 FSDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
LF+ ++ E A + TLV + +ACA L G+++H ++GLE
Sbjct: 104 SGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLEREST 163
Query: 121 ----MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ NA++ MYAKC ++A+ VF
Sbjct: 164 TATLVGNAMINMYAKCGSPEDAI--------------------------------AVFLT 191
Query: 177 IVDKDIVLWRSMMHGCVKAKQ-PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
I +KD+V W +M + ++ +AL +F++M+ + + P+ ++ L AC+SL +
Sbjct: 192 IPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD--- 248
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK---DVVTWTTMIEG 292
G +H + + + D ALI+MY KCG E A F + D+V+W MI
Sbjct: 249 GTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISA 308
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
G +A+ +F ++ +G++PN T +++L A SG+
Sbjct: 309 SVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGV 349
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 136/294 (46%), Gaps = 38/294 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA VT+ L++DI V N+L++ Y + +A F+ M RD+ SWN + + Y
Sbjct: 656 LGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYA 715
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E ++LF+ + EG+ DK+T + + GK H A + GL+ ++
Sbjct: 716 QAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSDVS 775
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ L+ +YAKC ++DEA+ LF + +V LN +I LA+ F
Sbjct: 776 VATGLVKLYAKCGKLDEAISLF-RGACQWTVVLLNAIIGA--------LAQHGFS----- 821
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
EEA+++F KM EGV PD +VS++SAC ++ G
Sbjct: 822 ------------------EEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEG--CS 861
Query: 241 RFILQN---NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD-VVTWTTMI 290
F+ I+ +D+ + G LE A K +D + WT+++
Sbjct: 862 SFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLL 915
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 114/254 (44%), Gaps = 38/254 (14%)
Query: 81 VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALR 140
AD L +C L GK H GLE L + N L+ MY +C ++EA
Sbjct: 22 AADLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHA 81
Query: 141 LFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
+F +M RN+VS W +++ ++
Sbjct: 82 IFSKM-EERNVVS-------------------------------WTALISANAQSGAFAR 109
Query: 201 ALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI----LQNNITQDAFVK 255
A LF+ M ++ P+ +V++L+AC++ +L GR +H I L+ T V
Sbjct: 110 AFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVG 169
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN-YGLGNEALRVFYQMERKGI 314
A+I+MY+KCGS E+A+ F KDVV+WT M A +ALR+F +M + +
Sbjct: 170 NAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPL 229
Query: 315 KPNEATFVSVLAAC 328
PN TF++ L AC
Sbjct: 230 APNVITFITALGAC 243
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
D + ++L +C ++L G+ H I + Q F+ LI+MY +CGSLEEA F
Sbjct: 24 DLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIF 83
Query: 276 YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHS 331
K + ++VV+WT +I A G A +F M PN T V++L AC +S
Sbjct: 84 SKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANS 140
>gi|224088613|ref|XP_002308496.1| predicted protein [Populus trichocarpa]
gi|222854472|gb|EEE92019.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 149/451 (33%), Positives = 247/451 (54%), Gaps = 2/451 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V + L D++V N+LI FY + AR LFDKM RDV +WN++++ Y
Sbjct: 142 LGKEIHCFVLRRGLVEDVFVENALISFYSKCLGVGFARKLFDKMRERDVVTWNSMIAGYA 201
Query: 61 DFSDSGEVLILFKQL-IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L++++ G + +T++ + AC + + L +G VH Y +E +
Sbjct: 202 QAGFFKECKELYREMGALPGFKPNAVTVLSVLQACMQSQDLVFGMEVHRYIVDNKVELDV 261
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NAL+ +YAKC +D A LFDEM S ++ V+ +I+GY+ +VD E+F E+
Sbjct: 262 LVCNALIGLYAKCGSLDYARELFDEM-SEKDEVTYGAIISGYMAHGVVDKGMELFREMKS 320
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+ + W +++ G V+ + E ++L ++M G P+ + SVL S SNL+ G+ +
Sbjct: 321 RVLSTWNAVISGLVQNNRHEGVVDLVREMQGLGFRPNAVTLSSVLPTLSYFSNLKGGKEI 380
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + ++N ++ +V TA+ID Y+K G L A F ++ + ++ WT +I A +G
Sbjct: 381 HGYAVKNGYDRNIYVATAIIDTYAKLGFLFGAQYVFDQSKERSLIIWTAIISAHAAHGDA 440
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
N AL F +M GI+P+ TF +VLAAC H G++ + ++F M Y +QP EH+ C
Sbjct: 441 NSALTFFDEMLSNGIQPDHVTFTAVLAACAHCGMVDKAWEIFNSMSKKYGIQPLGEHYAC 500
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+V +L RAG L QA EFI MP E + ALL + +LGK +++ ++ ++
Sbjct: 501 MVGVLGRAGRLSQATEFISTMPIEPNAKVWGALLHGASLCVDVELGKFACDHLFEIEPEN 560
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450
Y +++N Y+ G W E E N L+
Sbjct: 561 TGNYAIMANLYSQAGKWKEADEDTSNENALE 591
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 115/456 (25%), Positives = 203/456 (44%), Gaps = 76/456 (16%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K LHA + ++ D Y+G LI+ Y + AR +FD++P ++ S+N L+ Y
Sbjct: 37 KQLHARLLLSSSTLDNYLGARLINLYSKTKHIHHARHVFDQIPHKNTFSYNALLIAYTMN 96
Query: 63 SDSGEVLILFKQLIFEGIVADK-----ITLVILFSACARL-EKLHYGKTVHCYATKVGLE 116
+ E + LF L+ + IT ++ + + + GK +HC+ + GL
Sbjct: 97 NHHKETINLFSSLLLSSSGDLQPNNYSITCLLKSLSSLLMVTDVCLGKEIHCFVLRRGLV 156
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ +ENAL+ Y+KC + A +LFD+M R++V+ N +I GY +E++ E
Sbjct: 157 EDVFVENALISFYSKCLGVGFARKLFDKM-RERDVVTWNSMIAGYAQAGFFKECKELYRE 215
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ AL FK P+ ++SVL AC +L +G
Sbjct: 216 M----------------------GALPGFK--------PNAVTVLSVLQACMQSQDLVFG 245
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
VHR+I+ N + D V ALI +Y+KCGSL+ A F + KD VT+ +I G +
Sbjct: 246 MEVHRYIVDNKVELDVLVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGYMAH 305
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV-YR------ 349
G+ ++ + +F +M+ + + A ++ RH G++ L R M G+ +R
Sbjct: 306 GVVDKGMELFREMKSRVLSTWNAVISGLVQNNRHEGVV----DLVREMQGLGFRPNAVTL 361
Query: 350 --VQPTIEHF-------------------------VCLVDLLSRAGLLYQAEEFIKIMPA 382
V PT+ +F ++D ++ G L+ A +++
Sbjct: 362 SSVLPTLSYFSNLKGGKEIHGYAVKNGYDRNIYVATAIIDTYAKLGFLFGA-QYVFDQSK 420
Query: 383 EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
E I + A++SA + + + + M+ G Q
Sbjct: 421 ERSLIIWTAIISAHAAHGDANSALTFFDEMLSNGIQ 456
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 164/522 (31%), Positives = 255/522 (48%), Gaps = 64/522 (12%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+ A + + YV +++ + + AR LFD P V WN + Y +
Sbjct: 86 VQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAF 145
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
EV+ LF ++ + + T ++ +CA++ G+ +HC K GLE +
Sbjct: 146 YREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATT 205
Query: 125 LLLMYAK-------------------------------CKEMDEALRLFDEMGSRRNIVS 153
L+ +Y+ C + A RLFD + R++V
Sbjct: 206 LIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFD-LAPERDVVL 264
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK-----------AKQPE--- 199
NI+++GYI++ + AR++FD + +D + W +M++G + PE
Sbjct: 265 WNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNV 324
Query: 200 -----------------EALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
E L FK+M+ +G V P++ +V+VLSAC+ L L G+ VH
Sbjct: 325 FSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHV 384
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ +V ALIDMYSKCG +E A+ F D KD++TW +MI GLA +G G +
Sbjct: 385 YAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGAD 444
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F+QM+ G KP+ TF+ VL +C H GL+ EG F M Y + P IEH+ C+V
Sbjct: 445 ALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMV 504
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL RAGLL +A EF+K MP E + + ALL AC Y DL + ++ L ++
Sbjct: 505 DLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPA 564
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVLLSN Y G W +VA + M++ ++K PG S+I++
Sbjct: 565 NYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVN 606
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + IYVGN+LI Y + L +A +F+ M +D+ +WN+++
Sbjct: 378 LGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLA 437
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-----VHCYATKVGL 115
+ L LF Q+ G D IT + + +C L + G + V+ Y+ +
Sbjct: 438 THGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQI 497
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLA 170
E+ ++ ++ + +D A+ M + V L+ Y +++L +LA
Sbjct: 498 EHY----GCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELA 551
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 84/198 (42%), Gaps = 17/198 (8%)
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
EE +S+L +C +++ LQ V I+ + + +V ++ + + A F
Sbjct: 67 EEHFISLLRSCKTVALLQK---VQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFD 123
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
V W + G + E + +F +M+ ++PN TF VL +C G E
Sbjct: 124 HFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVE 183
Query: 337 G----CQLFRRMGGVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
G C++ + GG+ Q FV L+D+ S + A + M E +++
Sbjct: 184 GEEIHCEVIK--GGLEGNQ-----FVATTLIDVYSGGRAIGSAYKLFVGM-LERNIVAWT 235
Query: 391 ALLSACITYSEFDLGKKV 408
+++S I + L +++
Sbjct: 236 SMISGYILCNRVALARRL 253
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 145/414 (35%), Positives = 223/414 (53%), Gaps = 31/414 (7%)
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL 139
+ T L AC+ + +L +G+ VH + K G + + ++ AL+ Y ++ EA
Sbjct: 6 VSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEAR 65
Query: 140 RLFDEMGSR------------------------------RNIVSLNILINGYIDMELVDL 169
R+FDEM R RN S N +I+GY + V+
Sbjct: 66 RVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVES 125
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A +F ++ ++DI+ W +M+ + KQ EAL +F +M G+ PDE M +++SAC+
Sbjct: 126 AELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAH 185
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
L L G+ +H + ++ D ++ +ALIDMY+KCGSL+++LV F+K K++ W ++
Sbjct: 186 LGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSI 245
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
IEGLA +G EAL +F +M+R+ IKPN TF+SVL AC H+GL+ EG + F M +
Sbjct: 246 IEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFS 305
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
+ P IEH+ C+VDLL +AGLL A E ++ M E + + ALL C + + +
Sbjct: 306 IPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVAV 365
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRK-KPGNSIIDL 462
N L + Y LL N YA W+EVA R MKEL K PG+S I++
Sbjct: 366 NESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEM 419
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 148/312 (47%), Gaps = 48/312 (15%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N++I Y R+ A +LF +MP RD+ SW T+++ Y+ E L +F ++ GI
Sbjct: 111 NAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGID 170
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
D++T+ + SACA L L GK +H YA ++G + + + +AL+ MYAKC +D++L
Sbjct: 171 PDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLV- 229
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
VF ++ K++ W S++ G EEA
Sbjct: 230 -------------------------------VFFKLRKKNLFCWNSIIEGLAVHGYAEEA 258
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN---NITQDAFVKTAL 258
L +F +M E + P+ +SVL AC+ ++ GR RF+ + +I + +
Sbjct: 259 LAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGR--KRFLSMSRDFSIPPEIEHYGCM 316
Query: 259 IDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLA---NYGLGNEALRVFYQMERKG 313
+D+ K G LE+A LV + + V+ W ++ G N + A+ E K
Sbjct: 317 VDLLGKAGLLEDALELVRSMRMEPNSVI-WGALLGGCKLHRNLKIAQVAVN-----ESKV 370
Query: 314 IKPNEATFVSVL 325
++PN + + ++L
Sbjct: 371 LEPNNSGYYTLL 382
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 12/212 (5%)
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M+ V+P S++ ACS +S L +G VH I + FV+TAL+D Y G
Sbjct: 1 MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+ EA F + +DV WTTMI A G + A ++F +M + N A++ +++
Sbjct: 61 IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVR----NTASWNAMIDG 116
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA---ED 384
+ LF +M I + ++ S+ +A M +
Sbjct: 117 YSRLRNVESAELLFSQMP-----NRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDP 171
Query: 385 KFISYKALLSACITYSEFDLGKKVANNMMKLG 416
++ ++SAC DLGK++ M++G
Sbjct: 172 DEVTMATIISACAHLGALDLGKEIHLYAMEMG 203
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 72/161 (44%), Gaps = 1/161 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + + D D+Y+G++LI Y + + V+F K+ +++ WN+++
Sbjct: 191 LGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLA 250
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-VGLEYML 119
+ E L +F ++ E I + +T + + AC + G+ ++ + +
Sbjct: 251 VHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEI 310
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
++ + K +++AL L M N V L+ G
Sbjct: 311 EHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGG 351
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/455 (33%), Positives = 247/455 (54%), Gaps = 11/455 (2%)
Query: 11 KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLI 70
++ D ++ N ++ Y + DAR +FD+MP RD SWNT++S Y + +GE L+
Sbjct: 116 ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGY---AQNGE-LL 171
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLNMENALLLMY 129
++L E V D T + S + L + V K + + NA++ Y
Sbjct: 172 EAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSW-----NAIIAGY 226
Query: 130 AKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMM 189
+CK MD+A LF+ M + N+ S N +I GY + AR FD + +D + W +++
Sbjct: 227 VQCKRMDQARELFEAMPCQ-NVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAII 285
Query: 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249
G ++ EEAL LF +M +G + S LS C+ ++ L+ G+ VH +++ +
Sbjct: 286 AGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLE 345
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
+V AL+ MY KCG++++A + F + K+VV+W TMI G A +G G EAL +F M
Sbjct: 346 SGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESM 405
Query: 310 ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL 369
++ GI P++ T V VL+AC H+GL+ +G + F M Y + +H+ C++DLL RAG
Sbjct: 406 KKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGR 465
Query: 370 LYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429
L A+ +K MP E ++ ALL A + +LG+K A + ++ + YVLLSN
Sbjct: 466 LDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNL 525
Query: 430 YALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YA G W +V R M++ +K PG S +++++
Sbjct: 526 YAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQN 560
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 151/331 (45%), Gaps = 63/331 (19%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI------FEGIVADKIT---- 86
AR+LFD+MP RDV SWN ++S Y E +F ++ + G++A +
Sbjct: 49 ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRI 108
Query: 87 --LVILFSACARLEKLHYGKTVHCYATKVGL-------EYMLNME----NALLLMYAKCK 133
LF + A E + + + Y + L + M + N ++ YA+
Sbjct: 109 EDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNG 168
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
E+ EA RLF+E R++ + +++GY+ ++D AR VFD + +K+ V W +++ G V
Sbjct: 169 ELLEAQRLFEE-SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYV 227
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ K+ ++A ELF+ M C ++S+
Sbjct: 228 QCKRMDQARELFEAM-----------------PCQNVSSW-------------------- 250
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
+I Y++ G + +A F + +D ++W +I G A G G EAL +F +M+R G
Sbjct: 251 --NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 308
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
+ N +TF S L+ C + G Q+ R+
Sbjct: 309 ERLNRSTFTSTLSTCAEIAALELGKQVHGRV 339
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 121/264 (45%), Gaps = 21/264 (7%)
Query: 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC 192
+ + A LFD+M R++VS N +++GY V A+E+FDE+ K+ + W M+
Sbjct: 44 RNLRAARLLFDQM-PERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAY 102
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH-RFILQNNITQD 251
V+ + E+A LF+ D + + C ++ RLV R I +D
Sbjct: 103 VQNGRIEDARRLFESKADWEL---------ISWNCMMGGYVKRNRLVDARGIFDRMPERD 153
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
+I Y++ G L EA F ++ +DV TWT M+ G G+ +EA RVF M
Sbjct: 154 EVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPE 213
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY 371
K N ++ +++A + + +LF M + + ++ ++ G +
Sbjct: 214 K----NSVSWNAIIAGYVQCKRMDQARELFEAM-----PCQNVSSWNTMITGYAQNGDIA 264
Query: 372 QAEEFIKIMPAEDKFISYKALLSA 395
QA F MP D IS+ A+++
Sbjct: 265 QARNFFDRMPQRDS-ISWAAIIAG 287
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 57/95 (60%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V K L+S YVGN+L+ Y + DA ++F+ + ++V SWNT+++ Y
Sbjct: 331 LGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYA 390
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
E L+LF+ + GI+ D +T+V + SAC+
Sbjct: 391 RHGFGKEALMLFESMKKTGILPDDVTMVGVLSACS 425
>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
Length = 629
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 144/463 (31%), Positives = 244/463 (52%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +H + K L + V NSL+ Y + A +F+ R+ +W+ +++ Y
Sbjct: 132 MGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYA 191
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ + +F Q+ G + T V + +A + L L GK H K+G E +
Sbjct: 192 QNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIY 251
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+++AL+ MYAKC + +A +E FD++ +
Sbjct: 252 VKSALVDMYAKCGCIADA--------------------------------KEGFDQLYEV 279
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIVLW +M+ G V+ + EEAL L+ +M EG+ P + + S L AC+ ++ L+ G+ +H
Sbjct: 280 DIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLH 339
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I++ + A V +AL MYSKCG+LE+ + F + +DV+ W ++I G + G GN
Sbjct: 340 TQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGN 399
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F +M+ +G P+ TF+++L AC H GL+ G + F M Y + P ++H+ C+
Sbjct: 400 GALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACM 459
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+LSRAG+L +A++FI+ + + ++ +L AC + +FD+G +M+LG
Sbjct: 460 VDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDS 519
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AY+LLSN YA + W +V R M+ K PG S ++L
Sbjct: 520 SAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELN 562
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 163/331 (49%), Gaps = 35/331 (10%)
Query: 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL 75
S++YV SL++ Y ++ + +DAR +FD MP R+ SW+T+++ Y S E LF+ L
Sbjct: 45 SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFR-L 103
Query: 76 IFEGIVADKITLV--ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
+ E ++K V + SA + L G+ +H K GL +++EN+L+ MYAK
Sbjct: 104 MLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAG 163
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
M A +F+ R +I W +M+ G
Sbjct: 164 CMGAAFHVFESSRERNSIT--------------------------------WSAMITGYA 191
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ + + A+ +F +M G TP E V VL+A S L L G+ H +++ +
Sbjct: 192 QNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIY 251
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
VK+AL+DMY+KCG + +A F + D+V WT M+ G G EAL ++ +M+++G
Sbjct: 252 VKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEG 311
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
I P+++T S L AC + G QL ++
Sbjct: 312 IIPSKSTIASGLRACAGIAALEPGKQLHTQI 342
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 117/230 (50%), Gaps = 8/230 (3%)
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N+ L+N Y + +V AR VFD + ++ W +M+ G K EEA +LF+ M+
Sbjct: 46 NVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLML 105
Query: 210 DEGVTPDEE-VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+E + E V +VLSA S L G +H I+++ + V+ +L+ MY+K G +
Sbjct: 106 EECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCM 165
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
A F + ++ +TW+ MI G A G + A+ +F QM G P E TFV VL A
Sbjct: 166 GAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNAS 225
Query: 329 RHSGLITEGCQ---LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
G + G Q L ++G + VQ ++ LVD+ ++ G + A+E
Sbjct: 226 SDLGALAVGKQAHGLMVKLG--FEVQIYVKS--ALVDMYAKCGCIADAKE 271
>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 160/466 (34%), Positives = 248/466 (53%), Gaps = 43/466 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDA-RVLFDKMPFRDVGSWNTLMSIY 59
+G+ +H + K L+ D +G +L+ FY DA RV G N ++
Sbjct: 250 VGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVC--------KGVVNPCLNAL 301
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N L + LI G + D ++F+ + + Y
Sbjct: 302 NS---------LIEGLISMGRIEDA---ELVFNGMTEMNPVSY----------------- 332
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N ++ YA +MD++ RLF++M R I S N +I+ Y +D A E+F+E +
Sbjct: 333 ---NLMIKGYAVGGQMDDSKRLFEKMPCR-TIFSSNTMISVYSRNGEIDKALELFEETKN 388
Query: 180 -KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
KD V W SM+ G + + QPEEAL+L+ M + + ++ ACS L +L G+L
Sbjct: 389 EKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQL 448
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H +++ + +V T+LIDMYSKCGS+ EA +F +V WT +I G A +GL
Sbjct: 449 LHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGL 508
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G+EA+ +F +M +G+ PN ATFV VL+AC +GL+ EG ++F M Y V PT+EH+
Sbjct: 509 GSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYA 568
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDLL R+G + +AEEFIK MP E + + ALLSAC + + ++G++VA M +
Sbjct: 569 CVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPK 628
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+YV+LSN YA G W E R+ ++ + +K PG S I+L +
Sbjct: 629 PISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNN 674
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 129/457 (28%), Positives = 216/457 (47%), Gaps = 25/457 (5%)
Query: 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL 75
S+I N I Y + + AR LFD+MP R V SWNT++S Y+ E L L +
Sbjct: 30 SEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSM 89
Query: 76 IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135
+ + T + S CARL L GK +HC K G E + +ALL YA C E+
Sbjct: 90 HRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEI 149
Query: 136 DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK- 194
EA R+FD + RRN V ++++ GY+ ++D A VF ++ +D+V W +++ G K
Sbjct: 150 GEARRVFDVL-VRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKN 208
Query: 195 AKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ALE+F+ M+ G TP+E V+ AC L L GR VH +++ + D
Sbjct: 209 GDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPS 268
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVV-----TWTTMIEGLANYGLGNEALRVFYQ 308
+ AL++ Y +C ++++AL CK VV ++IEGL + G +A VF
Sbjct: 269 IGGALVEFYCECEAIDDALRV-----CKGVVNPCLNALNSLIEGLISMGRIEDAELVFNG 323
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
M N ++ ++ G + + +LF +M TI ++ + SR G
Sbjct: 324 MTEM----NPVSYNLMIKGYAVGGQMDDSKRLFEKMPC-----RTIFSSNTMISVYSRNG 374
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG-NQSHEAYVLLS 427
+ +A E + E +++ +++S I + + K+ M +L Q+ + L
Sbjct: 375 EIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALF 434
Query: 428 NFYALEG--HWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ + G H ++ A ++ G S+ID+
Sbjct: 435 HACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDM 471
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 166/490 (33%), Positives = 251/490 (51%), Gaps = 38/490 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
KG +++ + AL IY S I G MA A LF + D WNT++
Sbjct: 4 KGFNSNTS--ALRELIYA--SSIAISGTMAY---AHQLFPHITEPDTFMWNTMIRGSAQS 56
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ L+ Q+ + DK T + AC RL + G VH ++G E +
Sbjct: 57 PSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVR 116
Query: 123 NALLLMYAKCKEMDEALRLFD---------------------EMGSRR---------NIV 152
N L+ +A C ++ A LFD E+G R ++V
Sbjct: 117 NTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLV 176
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
S N++I GY ++ AR++FDE+ +D+V W +M+ G V ++ALE+F++M G
Sbjct: 177 SWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVG 236
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ-DAFVKTALIDMYSKCGSLEEA 271
PDE M+S+LSAC+ L +L G+ +H I + + ALIDMY+KCGS+ A
Sbjct: 237 ELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRA 296
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
L F KDV TW +++ GLA +G +++ +F +M + I+P+E TFV VL AC H+
Sbjct: 297 LEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHA 356
Query: 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKA 391
G + EG Q F M Y ++P I H+ C+VDLL RAGLL +A +FI M E I ++
Sbjct: 357 GRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRT 416
Query: 392 LLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451
LL AC + +LG++ ++K+ + YVLLSN YA G W V + R+ M +
Sbjct: 417 LLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGV 476
Query: 452 RKKPGNSIID 461
RK+ G S+I+
Sbjct: 477 RKEAGCSLIE 486
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/400 (23%), Positives = 152/400 (38%), Gaps = 128/400 (32%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHF-------------------------------YG 29
MG G+H V + +S+ +V N+LI+F Y
Sbjct: 96 MGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYA 155
Query: 30 RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD------------------------- 64
R AR LFD+MP +D+ SWN +++ Y +
Sbjct: 156 RRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAG 215
Query: 65 ------SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL-EY 117
+ + L +F+++ G + D++T++ L SAC L L G+ +HC +++G +
Sbjct: 216 YVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDL 275
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + NAL+ MYAKC + AL EVF +
Sbjct: 276 SVLLGNALIDMYAKCGSIVRAL--------------------------------EVFQGM 303
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+KD+ W S++ G E+++ LF +M + PDE V VL ACS ++ GR
Sbjct: 304 REKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGR 363
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
++ +D + I Y M++ L G
Sbjct: 364 QYF------DLMRDEYNIEPNIRHYG------------------------CMVDLLGRAG 393
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
L NEA M+ I+PN + ++L ACR G + G
Sbjct: 394 LLNEAFDFIDTMK---IEPNAIVWRTLLGACRIHGNVELG 430
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 214/360 (59%), Gaps = 2/360 (0%)
Query: 105 TVHCYATKVGLEYMLNMENALLLMYAKC-KEMDEALRLFDEMGSRRNIVSLNILINGYID 163
VH +A K+GL L + NAL+ ++A + +AL L S + + N LI Y
Sbjct: 231 AVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASV-DASTFNTLITAYAR 289
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223
V AR +FDE+ ++ V W +M++G V+A EAL LF +M +GV PD+ V+V V
Sbjct: 290 AGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGV 349
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
L+AC+ L L+ G+ VH ++ NNI F+ TAL+DMY+KCG ++ A+ F K+V
Sbjct: 350 LAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNV 409
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
+ WTTMI+GLA +G G+EAL +F QMER G+KP++ F+ L AC H+GL+ +G +LF
Sbjct: 410 LAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDS 469
Query: 344 MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
M Y ++P IEH+ C+VDLL+R GLL +A E ++ MP + + + AL++ C + +
Sbjct: 470 MVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVE 529
Query: 404 LGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
L + V + ++L AYVLL N YA G E R M+E K PG S +++K
Sbjct: 530 LAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIK 589
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 128/284 (45%), Gaps = 34/284 (11%)
Query: 11 KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLI 70
+TA D N+LI Y R TDAR LFD+MP R+ SW+ +++ Y D E L
Sbjct: 270 RTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALG 329
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
LF ++ +G+ D LV + +ACA+L L GK VH Y + + + AL+ MYA
Sbjct: 330 LFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYA 389
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
KC EM A+ EVF + +K+++ W +M+
Sbjct: 390 KCGEMQLAM--------------------------------EVFKVMKEKNVLAWTTMIK 417
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNIT 249
G + EALELF +M GV PD+ + L AC+ + GR L + + I
Sbjct: 418 GLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIK 477
Query: 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEG 292
++D+ ++ G L EA K K D + W ++ G
Sbjct: 478 PKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAG 521
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 42/221 (19%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H ++ + +++G +L+ Y + A +F M ++V +W T++
Sbjct: 362 GKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAM 421
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF Q+ G+ D I + AC T GL
Sbjct: 422 HGRGSEALELFSQMERLGVKPDDIAFIGALCAC----------------THTGL------ 459
Query: 122 ENALLLMYAKCKEMDEALRLFDEM----GSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+D+ LFD M G + I +++ L++ ARE+ +++
Sbjct: 460 -------------VDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKM 506
Query: 178 VDK-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217
K D ++W ++M GC K E A + K I+ + PD+
Sbjct: 507 PMKPDALIWGALMAGCRFHKNVELAEYVVKHWIE--LEPDK 545
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 254/467 (54%), Gaps = 6/467 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRM--ALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K +HAH+ + L YV LI ++ + + ++F ++ + + W ++ Y
Sbjct: 59 KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYML 119
E + ++ +G+ T LF AC + GK VH +G L
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDL 178
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ N+++ +Y KC + A ++FDEM S R++VS LI Y ++ A +FD++
Sbjct: 179 YVGNSMIDLYVKCGFLGCARKVFDEM-SERDVVSWTELIVAYAKYGDMESASGLFDDLPS 237
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KD+V W +M+ G + +P+EALE F+KM D G+ DE + V+SAC+ L +++ +
Sbjct: 238 KDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWI 297
Query: 240 HRFILQNNI--TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
++ + + V +ALIDMYSKCGS +EA F ++V ++++MI G A +G
Sbjct: 298 RDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG 357
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+ AL++F+ M + I+PN+ TF+ +L+AC H+GL+ +G QLF +M + V P+ +H+
Sbjct: 358 RAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHY 417
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RAG L +A + +K MP E + ALL AC + D+ + AN + KL
Sbjct: 418 ACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEP 477
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
Y+LLSN YA G W EV++ R+ ++E +K PG S + K+
Sbjct: 478 NGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKN 524
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 155/487 (31%), Positives = 253/487 (51%), Gaps = 33/487 (6%)
Query: 7 AHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSG 66
A + KT+ + Y+ N I A +M +V +N L+ + S
Sbjct: 801 AAMIKTSQTQNCYLMNQFITACSSFNRLDLAVSFMTQMQKPNVFVYNALIKGFVTCSHPI 860
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
L + +++ + + T L A A +G+++ + K G + + ++ L+
Sbjct: 861 RSLEFYVRMLRDSVSPSSYTYSSLVQASAFASG--FGESLQAHIWKFGFGFHVQIQTTLI 918
Query: 127 LMYAKCKEMDEALRLFDEMGSR------------------------------RNIVSLNI 156
Y+ + EA ++FDEM R +N + N
Sbjct: 919 GFYSASGRIREARKVFDEMPERDDVTWTTMVSAYRQVLDMDSANSLANQMPEKNEATWNC 978
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
LI+GY + ++LA +F+++ KDI+ W +M++G + K+ EA+ +F KM++EG+ PD
Sbjct: 979 LIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVFYKMMEEGIIPD 1038
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
E M +V+SAC+ L L+ G+ VH + +QN D ++ +AL+DMYSKCGSLE AL+ F+
Sbjct: 1039 EVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGSLERALLVFF 1098
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
K++ W ++IEGLA +G EAL++F +ME + +KPN TFVSV AC H+GL+ E
Sbjct: 1099 NLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAGLVEE 1158
Query: 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
G +++R M Y + +EH+ C+V L S+AGL+Y+A E I M E + + ALL C
Sbjct: 1159 GRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELIGSMEFEPNAVIWGALLDGC 1218
Query: 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK-P 455
+ ++ + N +M L + Y LL + YA + W +VAE R M+EL K P
Sbjct: 1219 RIHKNLEIAEIAFNKLMILEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICP 1278
Query: 456 GNSIIDL 462
G S I +
Sbjct: 1279 GTSSIRI 1285
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 143/355 (40%), Gaps = 96/355 (27%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ L AH+ K + + +LI FY +AR +FD+MP RD +W T++S Y
Sbjct: 895 GESLQAHIWKFGFGFHVQIQTTLIGFYSASGRIREARKVFDEMPERDDVTWTTMVSAYRQ 954
Query: 60 -----------NDFSDSGEV----LI--------------LFKQLIFEGIVA-------- 82
N + E LI LF Q+ + I++
Sbjct: 955 VLDMDSANSLANQMPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGY 1014
Query: 83 -----------------------DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
D++T+ + SACA L L GK VH Y + G +
Sbjct: 1015 SRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDV 1074
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ +AL+ MY+KC ++ AL VF +
Sbjct: 1075 YIGSALVDMYSKCGSLERALL--------------------------------VFFNLPK 1102
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K++ W S++ G +EAL++F KM E V P+ VSV +AC+ ++ GR +
Sbjct: 1103 KNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAGLVEEGRRI 1162
Query: 240 HRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEG 292
+R ++ + +I + ++ ++SK G + EAL + + + V W +++G
Sbjct: 1163 YRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELIGSMEFEPNAVIWGALLDG 1217
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 90/177 (50%), Gaps = 10/177 (5%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + + D+Y+G++L+ Y + A ++F +P +++ WN+++
Sbjct: 1057 IGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLA 1116
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML- 119
+ E L +F ++ E + + +T V +F+AC + G+ + Y + + +Y +
Sbjct: 1117 AHGFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAGLVEEGRRI--YRSMID-DYSIV 1173
Query: 120 -NMEN--ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLA 170
N+E+ ++ +++K + EAL L M N V L++G + ++E+ ++A
Sbjct: 1174 SNVEHYGCMVHLFSKAGLIYEALELIGSMEFEPNAVIWGALLDGCRIHKNLEIAEIA 1230
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 242/448 (54%), Gaps = 32/448 (7%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
++ + N++I R + +AR LF+ + RD +W T+++ E L +F+++
Sbjct: 210 NVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMR 269
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
EG+ D+ T + +AC L L GK +H Y T+ E + + +AL+ MY+KC+
Sbjct: 270 AEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRS-- 327
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
V LA VF ++ K+I+ W +M+ G +
Sbjct: 328 ------------------------------VRLAEAVFRRMMWKNIISWTAMIVGYGQNG 357
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
EEA+ +F +M +G+ PD+ + SV+S+C++L++L+ G H L + + V
Sbjct: 358 CGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSN 417
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
AL+ +Y KCGS+E+A F + D V+WT ++ G A +G E + +F +M KG+KP
Sbjct: 418 ALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKP 477
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
+ TF+ VL+AC SGL+ +G F M + + P +H+ C++DL SR+G L QAEEF
Sbjct: 478 DGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEF 537
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436
IK MP + LLSAC + ++GK A N++KL Q+ +YVLL + +A +G W
Sbjct: 538 IKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEW 597
Query: 437 TEVAEARRNMKELQTRKKPGNSIIDLKH 464
+VA+ RR M++ Q +K+PG S I K+
Sbjct: 598 NDVAKLRRGMRDRQVKKEPGCSWIKYKN 625
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/401 (30%), Positives = 212/401 (52%), Gaps = 8/401 (1%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
++ GNSL+ R L D LF +P RD S+N L++ ++ + L+
Sbjct: 76 NLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALL 135
Query: 77 FE--GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+ G+ +IT+ + + L G+ VHC ++G + L+ MYAK
Sbjct: 136 RDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGP 195
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+ +A R+FDEM + N+V N +I G + ++V AR +F+ I ++D + W +M+ G +
Sbjct: 196 IGDARRVFDEMEGK-NVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQ 254
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
EAL++F++M EGV D+ S+L+AC +L+ L+ G+ +H +I + + FV
Sbjct: 255 NGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFV 314
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
+AL+DMYSKC S+ A F + K++++WT MI G G G EA+RVF +M+R GI
Sbjct: 315 GSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGI 374
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
KP++ T SV+++C + + EG Q F + V ++P + LV L + G + A
Sbjct: 375 KPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAH 433
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
M D+ +S+ AL+ + Y++F K+ + K+
Sbjct: 434 RLFDEMSFHDQ-VSWTALV---MGYAQFGKAKETIDLFEKM 470
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 140/294 (47%), Gaps = 36/294 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA++T+T + +++VG++L+ Y + A +F +M ++++ SW ++ Y
Sbjct: 296 GKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQ 355
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + +F ++ +GI D TL + S+CA L L G HC A GL + +
Sbjct: 356 NGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTV 415
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ +Y KC +++A RLFDEM D
Sbjct: 416 SNALVTLYGKCGSIEDAHRLFDEMSFH--------------------------------D 443
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVH 240
V W +++ G + + +E ++LF+KM+ +GV PD + VLSACS + GR H
Sbjct: 444 QVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFH 503
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK--TDCKDVVTWTTMIEG 292
++I T +ID+YS+ G L++A F K C D W T++
Sbjct: 504 SMQQDHDIVPLDDHYTCMIDLYSRSGWLKQA-EEFIKQMPRCPDAFGWATLLSA 556
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 137/308 (44%), Gaps = 44/308 (14%)
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N LL YA + A R+FD M RN+V+ N L++ LV +F + +D
Sbjct: 50 NTLLTAYASSGLLPHARRVFDAMPG-RNLVTGNSLLSALARAGLVRDMERLFTSLPQRDA 108
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMI--DEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
V + +++ G +A A + ++ + GV P M V+ S+L + GR VH
Sbjct: 109 VSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVH 168
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV---------------- 284
IL+ AF + L+DMY+K G + +A F + + K+VV
Sbjct: 169 CQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVA 228
Query: 285 ---------------TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
TWTTM+ GL GL +EAL VF +M +G+ ++ TF S+L AC
Sbjct: 229 EARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACG 288
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIMPAEDK 385
+ EG Q+ Y + E V LVD+ S+ + AE + M ++
Sbjct: 289 ALAALEEGKQIH-----AYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKN- 342
Query: 386 FISYKALL 393
IS+ A++
Sbjct: 343 IISWTAMI 350
>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
Length = 1108
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 143/441 (32%), Positives = 229/441 (51%), Gaps = 32/441 (7%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
+LI +GR AR +F++M DV SW ++S + D EV LF+++ EG++
Sbjct: 576 TALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVI 635
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
DK TL C L GK +H T++GLE + +ENALL MY+ C + EAL
Sbjct: 636 PDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSF 695
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
F+ M +R D+V W M +A +EA
Sbjct: 696 FETMKAR--------------------------------DLVSWNIMSAAYAQAGLAKEA 723
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
+ LF++M EGV PD+ + L+ + + G+L H ++ + D V T L+ +
Sbjct: 724 VLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVKL 783
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y+KCG L+EA+ F VV +I LA +G EA+++F++M+++G++P+ AT
Sbjct: 784 YAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATL 843
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
VS+++AC H+G++ EGC F M + + PT+EH+ C VDLL RAG L AE+ I+ MP
Sbjct: 844 VSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMP 903
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
ED + + +LL C + +LG++ A +++L + A+V+LSN Y G W +
Sbjct: 904 FEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADV 963
Query: 442 ARRNMKELQTRKKPGNSIIDL 462
R+ M + + PG S ++
Sbjct: 964 DRKKMLDENVKNAPGMSWFEI 984
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 106/450 (23%), Positives = 201/450 (44%), Gaps = 78/450 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR-DVGSWNTLMSIYN 60
+G H + ++ D+ +GN++I Y + F+ A +F ++ ++ DV SWNT++
Sbjct: 354 ARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASE 413
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM-L 119
D G+V+ F ++ GI +K++ + + +AC+ E L +G+ +H +Y+
Sbjct: 414 DRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVES 473
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMG-SRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ L+ MY KC + EA +F EM R++V+ N+++ Y D ++E F ++
Sbjct: 474 SVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQN---DRSKEAFGALM 530
Query: 179 D-------KDIVLWRSMMHGCV-------------------------------KAKQPEE 200
+ D + + S++ C + ++ E+
Sbjct: 531 EMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACLETALISMHGRCRELEQ 590
Query: 201 ALELFKKMIDEG--------------------------------VTPDEEVMVSVLSACS 228
A +F +M D G V PD+ + + L C
Sbjct: 591 ARSVFNEM-DHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCL 649
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
+ + L G+++H + + + D V+ AL++MYS CG EAL F +D+V+W
Sbjct: 650 ASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNI 709
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
M A GL EA+ +F QM+ +G+KP++ TF + L S L+++G +LF +
Sbjct: 710 MSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDG-KLFHALAAES 768
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
+ + LV L ++ G L +A +
Sbjct: 769 GLDSDVSVATGLVKLYAKCGKLDEAMSLFR 798
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 162/344 (47%), Gaps = 46/344 (13%)
Query: 1 MGKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
+ KG HAH + L+ +++GN LI+ Y R +A +F KM R+V SW L+S
Sbjct: 41 LAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISA 100
Query: 59 YNDFSDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
LF+ ++ E A + TLV + +ACA L G+++H ++GLE
Sbjct: 101 NAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLER 160
Query: 118 MLN----MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
+ NA++ MYAKC +++A+ V
Sbjct: 161 ASTTATLVGNAMINMYAKCGSLEDAI--------------------------------AV 188
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQ-PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
F I +KD+V W +M + ++ +AL +F++M+ + + P+ ++ L AC+SL +
Sbjct: 189 FLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD 248
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK---DVVTWTTM 289
G +H + + ++ D ALI+MY KCG E A F + D+V+W M
Sbjct: 249 ---GTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAM 305
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
I G +A+ +F ++ +G++PN T +++L A SG+
Sbjct: 306 ISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGV 349
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 104/411 (25%), Positives = 188/411 (45%), Gaps = 50/411 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSI 58
G LH+ + + +L D N+LI+ YG+ + A +F M R D+ SWN ++S
Sbjct: 249 GTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISA 308
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG--KTVHCYATKVGLE 116
+ G+ + +F++L EG+ + +TL+ + +A A + +G + H + G
Sbjct: 309 SVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALA-ASGVDFGAARGFHGRIWESGYL 367
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + NA++ MYAKC A +F + + +++S N ++ D R+ F +
Sbjct: 368 RDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASED-------RKSFGK 420
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+V+ F M+ G+ P++ +++L+ACS+ L +G
Sbjct: 421 VVNT------------------------FHHMLLAGIDPNKVSFIAILNACSNSEALDFG 456
Query: 237 RLVHRFIL-QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT--DCKDVVTWTTMIEGL 293
R +H IL + ++ V T L+ MY KCGS+ EA + F + + +VTW M+
Sbjct: 457 RKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAY 516
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR--MGGVYRVQ 351
A EA +M + G+ P+ +F SVL++C ++ Q+ R + YR
Sbjct: 517 AQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC----YCSQEAQVLRMCILESGYR-S 571
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
+E L+ + R L QA M D +S+ A++SA +F
Sbjct: 572 ACLE--TALISMHGRCRELEQARSVFNEMDHGD-VVSWTAMVSATAENRDF 619
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 136/294 (46%), Gaps = 38/294 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA VT+ L++DI V N+L++ Y + +A F+ M RD+ SWN + + Y
Sbjct: 656 LGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYA 715
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E ++LF+Q+ EG+ DK+T + + GK H A + GL+ ++
Sbjct: 716 QAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVS 775
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ L+ +YAKC ++DEA+ LF +V LN +I LA+ F
Sbjct: 776 VATGLVKLYAKCGKLDEAMSLF-RGACDWTVVLLNAIIGA--------LAQHGFS----- 821
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
EEA+++F KM EGV PD +VS++SAC ++ G
Sbjct: 822 ------------------EEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEG--CS 861
Query: 241 RFILQN---NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD-VVTWTTMI 290
F+ I+ +D+ + G LE A K +D + WT+++
Sbjct: 862 SFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLL 915
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 38/254 (14%)
Query: 81 VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALR 140
AD L +C L GK H GLE L + N L+ MY +C ++E
Sbjct: 22 AADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEE--- 78
Query: 141 LFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
A +F ++ ++++V W +++ +
Sbjct: 79 -----------------------------AHAIFSKMEERNVVSWTALISANAQCGAFAR 109
Query: 201 ALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI----LQNNITQDAFVK 255
A LF+ M ++ P+ +V++L+AC++ +L GR +H I L+ T V
Sbjct: 110 AFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVG 169
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN-YGLGNEALRVFYQMERKGI 314
A+I+MY+KCGSLE+A+ F KDVV+WT M A +ALR+F +M + +
Sbjct: 170 NAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPL 229
Query: 315 KPNEATFVSVLAAC 328
PN TF++ L AC
Sbjct: 230 APNVITFITALGAC 243
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 5/184 (2%)
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
D + ++L +C ++L G+ H I + Q F+ LI+MY +CGSLEEA F
Sbjct: 24 DLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIF 83
Query: 276 YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLI 334
K + ++VV+WT +I A G A +F M PN T V++L AC +S +
Sbjct: 84 SKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDL 143
Query: 335 TEGCQLFRRMG--GVYRVQPTIEHFV-CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKA 391
G + + G+ R T ++++ ++ G L A +P +D +S+ A
Sbjct: 144 AIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKD-VVSWTA 202
Query: 392 LLSA 395
+ A
Sbjct: 203 MAGA 206
>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 587
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 143/464 (30%), Positives = 244/464 (52%), Gaps = 33/464 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ K +S +V NSLI Y + +DA +F P + S+N L++ +
Sbjct: 119 LGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFV 178
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L FK + +G++ D+ + + C E L G +HC K+ L+
Sbjct: 179 ENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPF 238
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N ++ MY+ ++ L+ A + F I +K
Sbjct: 239 IGNVIITMYS--------------------------------ELNLIQEAEKAFRLIEEK 266
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D++ W +++ C + L +FK M +E V PD+ S L+AC+ L+++ +G+ +
Sbjct: 267 DVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQI 326
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +++ + QD V AL++MY+KCG + A F K ++V+W T+I G N+GLG
Sbjct: 327 HAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLG 386
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
A+ +F QM GI+P+ TF+ +L AC H+GL+ +G F M Y + P IEHF C
Sbjct: 387 ERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDIEHFSC 446
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
L+D+L RAG L +AEE+++ P + + +LLSA + + +G+++A ++KL +
Sbjct: 447 LIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSLLSASRLHGDVVIGERLAKWLLKLQPVT 506
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVLLSN YA +G W VAEAR+ +K +K+PG+S+I++
Sbjct: 507 TSPYVLLSNLYASDGMWDSVAEARKRLKGSGLKKEPGHSLIEVN 550
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 166/340 (48%), Gaps = 36/340 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LHA V KT SD+++ N +++ Y + T AR +FD+M +++ SW+ ++S Y+
Sbjct: 22 GLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSWSAMISGYDQ 81
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + L+ Q+ +V ++ + SACA L + G+ +H + K G E + +
Sbjct: 82 AGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISFV 138
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ MY KC + +AL +F N VS N LI G+
Sbjct: 139 SNSLISMYMKCNQCSDALSVFTNT-PEPNCVSYNALITGF-------------------- 177
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V+ +Q E LE FK M +G+ PD + VL C++ NL+ G +H
Sbjct: 178 -----------VENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHC 226
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ N+ F+ +I MYS+ ++EA F + KDV++W T+I ++ +
Sbjct: 227 QTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAK 286
Query: 302 ALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
LRVF M E ++P++ TF S LAAC ++ G Q+
Sbjct: 287 GLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQI 326
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 39/350 (11%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
TL L C++ + L G ++H K G + + M N +L MYAKC
Sbjct: 5 TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGH----------- 53
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
AR+VFDE+ +K++V W +M+ G +A +P+ A++L+
Sbjct: 54 ---------------------TTFARQVFDEMFEKNLVSWSAMISGYDQAGEPQMAIDLY 92
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+M + P+E V SV+SAC+SLS + G+ +H L+ +FV +LI MY KC
Sbjct: 93 SQMF---LVPNEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKC 149
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
+AL F T + V++ +I G L F M ++G+ P+ F+ VL
Sbjct: 150 NQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVL 209
Query: 326 AACRHSGLITEGCQLFRRMGGV-YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
C + + G +L + + P I + + + + S L+ +AE+ +++ +D
Sbjct: 210 GICTTTENLKRGAELHCQTVKLNLDSTPFIGNVI--ITMYSELNLIQEAEKAFRLIEEKD 267
Query: 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
IS+ L++AC + G +V +M + N + + S A G
Sbjct: 268 -VISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAG 316
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
E + S+L CS L+ G +H +L+ D F+ +++MY+KCG A F +
Sbjct: 4 ETLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDE 63
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
K++V+W+ MI G G A+ ++ QM + PNE F SV++AC +T G
Sbjct: 64 MFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLG 120
Query: 338 CQLFRR 343
++ R
Sbjct: 121 QKIHSR 126
>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 655
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 242/467 (51%), Gaps = 42/467 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + T+ +D+ V ++ Y + AR +FD ++ +W+ ++ Y +
Sbjct: 224 GKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDSDFKKNEVTWSAMIGGYVE 283
Query: 62 ---FSDSGEVLILFKQLIFEGIVA--DKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
++GEV F Q++ +A + + ++ CAR L G+ VHCYA K G
Sbjct: 284 NEMIKEAGEV---FLQMLVNADMAMVTPVAIGLILMGCARFGDLSGGRCVHCYAIKAGFI 340
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
L + N ++ YAK + +A R F E+G
Sbjct: 341 LDLTVGNTVISFYAKYGSLCDAFRQFTEIGL----------------------------- 371
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
KDIV + S++ GCV+ + EE+ LF +M G+ PD ++ +L+ACS+L+ L +G
Sbjct: 372 ---KDIVSYNSLISGCVENCRAEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHG 428
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
H + + N + + AL+DMY+KCG L A F +D+V+W TM+ G +
Sbjct: 429 SSCHGYCVVNGYAVNTSICNALMDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIH 488
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG-GVYRVQPTIE 355
GLG EAL +F M+ G+ P+E T +++L+AC HSGL+ EG QLF M G + V P ++
Sbjct: 489 GLGKEALSLFNSMQDTGVHPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLD 548
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
H+ C+ DLL+RAG L +A +F+ MP E LLSAC TY +LG +V+ M L
Sbjct: 549 HYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNVELGNEVSKKMQSL 608
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
G ++ E+ VLLSN Y+ W + A+ R K+ K PG S +D+
Sbjct: 609 G-ETTESLVLLSNTYSAAERWEDAAKIRMTQKKSGLLKTPGYSWVDV 654
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 120/431 (27%), Positives = 209/431 (48%), Gaps = 45/431 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+HV + +D+YV +L+ FY + A +FD+MP RD+ +WN ++S ++
Sbjct: 122 GKLIHSHVKCSNFAADMYVCTALVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGFSL 181
Query: 62 FSDSGEVLILFKQLIFEGIVADKI-TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+V+ LF + ++ + T+V +F A R L GK VH Y T++G L
Sbjct: 182 HCCLTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLV 241
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE-IVD 179
++ +L +YAK K + A R+FD ++N V+ + +I GY++ E++ A EVF + +V+
Sbjct: 242 VKTGILDVYAKSKCIIYARRVFDS-DFKKNEVTWSAMIGGYVENEMIKEAGEVFLQMLVN 300
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+ + VTP + +L C+ +L GR V
Sbjct: 301 ADMAM----------------------------VTP--VAIGLILMGCARFGDLSGGRCV 330
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + ++ D V +I Y+K GSL +A F + KD+V++ ++I G
Sbjct: 331 HCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVENCRA 390
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG--CQLFRRMGGVYRVQPTIEHF 357
E+ R+F+QM+ GI+P+ T + +L AC + + G C + + G Y V +I +
Sbjct: 391 EESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNG-YAVNTSICN- 448
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK---VANNMMK 414
L+D+ ++ G LY A+ M D +S+ +L + LGK+ + N+M
Sbjct: 449 -ALMDMYTKCGKLYVAKRVFDTMHKRD-IVSWNTML---FGFGIHGLGKEALSLFNSMQD 503
Query: 415 LGNQSHEAYVL 425
G E +L
Sbjct: 504 TGVHPDEVTLL 514
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 3/180 (1%)
Query: 161 YIDMELVDLAREVFDEIVDKDI--VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE 218
Y V+LAR VFDEI I + W M+ V E+AL+L+ KM++ GV P +
Sbjct: 45 YASCNEVELARHVFDEIPHPRINPIAWDLMIRAYVSNGFAEKALDLYYKMLNSGVRPTKF 104
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
VL AC+ L ++ G+L+H + +N D +V TAL+D Y+KCG L+ A+ F +
Sbjct: 105 TYPFVLKACAGLRAIEDGKLIHSHVKCSNFAADMYVCTALVDFYAKCGELDMAIKVFDEM 164
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEG 337
+D+V W MI G + + + + +F M R + PN +T V + A +G + EG
Sbjct: 165 PKRDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRAGALREG 224
>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 143/464 (30%), Positives = 244/464 (52%), Gaps = 33/464 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ K +S +V NSLI Y + +DA +F P + S+N L++ +
Sbjct: 119 LGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFV 178
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L FK + +G++ D+ + + C E L G +HC K+ L+
Sbjct: 179 ENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPF 238
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N ++ MY+ ++ L+ A + F I +K
Sbjct: 239 IGNVIITMYS--------------------------------ELNLIQEAEKAFRLIEEK 266
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D++ W +++ C + L +FK M +E V PD+ S L+AC+ L+++ +G+ +
Sbjct: 267 DVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQI 326
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +++ + QD V AL++MY+KCG + A F K ++V+W T+I G N+GLG
Sbjct: 327 HAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLG 386
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
A+ +F QM GI+P+ TF+ +L AC H+GL+ +G F M Y + P IEHF C
Sbjct: 387 ERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDIEHFSC 446
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
L+D+L RAG L +AEE+++ P + + +LLSA + + +G+++A ++KL +
Sbjct: 447 LIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSLLSASRLHGDVVIGERLAKWLLKLQPVT 506
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVLLSN YA +G W VAEAR+ +K +K+PG+S+I++
Sbjct: 507 TSPYVLLSNLYASDGMWDSVAEARKRLKGSGLKKEPGHSLIEVN 550
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 166/340 (48%), Gaps = 36/340 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LHA V KT SD+++ N +++ Y + T AR +FD+M +++ SW+ ++S Y+
Sbjct: 22 GLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSWSAMISGYDQ 81
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + L+ Q+ +V ++ + SACA L + G+ +H + K G E + +
Sbjct: 82 AGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISFV 138
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ MY KC + +AL +F N VS N LI G+
Sbjct: 139 SNSLISMYMKCNQCSDALSVFTNT-PEPNCVSYNALITGF-------------------- 177
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V+ +Q E LE FK M +G+ PD + VL C++ NL+ G +H
Sbjct: 178 -----------VENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHC 226
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ N+ F+ +I MYS+ ++EA F + KDV++W T+I ++ +
Sbjct: 227 QTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAK 286
Query: 302 ALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
LRVF M E ++P++ TF S LAAC ++ G Q+
Sbjct: 287 GLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQI 326
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 39/350 (11%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
TL L C++ + L G ++H K G + + M N +L MYAKC
Sbjct: 5 TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGH----------- 53
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
AR+VFDE+ +K++V W +M+ G +A +P+ A++L+
Sbjct: 54 ---------------------TTFARQVFDEMFEKNLVSWSAMISGYDQAGEPQMAIDLY 92
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+M + P+E V SV+SAC+SLS + G+ +H L+ +FV +LI MY KC
Sbjct: 93 SQMF---LVPNEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKC 149
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
+AL F T + V++ +I G L F M ++G+ P+ F+ VL
Sbjct: 150 NQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVL 209
Query: 326 AACRHSGLITEGCQLFRRMGGV-YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
C + + G +L + + P I + + + + S L+ +AE+ +++ +D
Sbjct: 210 GICTTTENLKRGAELHCQTVKLNLDSTPFIGNVI--ITMYSELNLIQEAEKAFRLIEEKD 267
Query: 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
IS+ L++AC + G +V +M + N + + S A G
Sbjct: 268 -VISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAG 316
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
E + S+L CS L+ G +H +L+ D F+ +++MY+KCG A F +
Sbjct: 4 ETLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDE 63
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
K++V+W+ MI G G A+ ++ QM + PNE F SV++AC +T G
Sbjct: 64 MFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLG 120
Query: 338 CQLFRR 343
++ R
Sbjct: 121 QKIHSR 126
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 246/465 (52%), Gaps = 35/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
M + H V K LD+D + NS++ Y R AR +FD++ +D+ SWN+L+S Y
Sbjct: 135 MARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYA 194
Query: 61 DFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ E + +F +L E G D+++LV + AC L L G+ V + + G++
Sbjct: 195 KLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNS 254
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ +AL+ MY+KC E+ + SRR +FD +
Sbjct: 255 YIGSALISMYSKCGEL---------VSSRR-----------------------IFDGMPS 282
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D + W + + + +EA+ LF M + GV P++ + +VLSAC+S+ L G+ +
Sbjct: 283 RDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQM 342
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
+ + D FV TALIDMY+KCGSLE A F K+ +W MI LA++G
Sbjct: 343 DEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKA 402
Query: 300 NEALRVFYQMERKG--IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F +M +G +PN+ TFVS+L+AC H+GL+ EG +LF M ++ + P IEH+
Sbjct: 403 KEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHY 462
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLLSRAG LY+A + I+ MP + ++ AL SAC D+G++V +++L
Sbjct: 463 SCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDP 522
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ Y++ S Y W + A R M+E K PG S I++
Sbjct: 523 SNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEV 567
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 195/391 (49%), Gaps = 45/391 (11%)
Query: 18 IYVGNSLIHFYGRMALFTDARVLFDKM-PFRDVGSWNTLM-SIYNDFSDSGEVLILFKQL 75
I+ N L+ + FT + ++F + P + ++N ++ + + D L L+ Q+
Sbjct: 49 IHKPNHLLSQSISLKDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQM 108
Query: 76 IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135
I + T +F ACA LE++ + HC K+GL+ + N+++ MY +C E
Sbjct: 109 KTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGE- 167
Query: 136 DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195
NG +AR+VFDEI +KD+V W S++ G K
Sbjct: 168 -----------------------NG--------VARKVFDEITEKDLVSWNSLLSGYAKL 196
Query: 196 KQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
EA+E+F ++ +E G PDE +VSVL AC L +L+ GR V F+++ + ++++
Sbjct: 197 GFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYI 256
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
+ALI MYSKCG L + F +D +TW I A G+ +EA+ +F+ M+ G+
Sbjct: 257 GSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGV 316
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH--FV--CLVDLLSRAGLL 370
PN+ T +VL+AC G + G Q+ Y ++H FV L+D+ ++ G L
Sbjct: 317 DPNKVTLTAVLSACASIGALDLGKQMDE-----YATHRGLQHDIFVATALIDMYAKCGSL 371
Query: 371 YQAEEFIKIMPAEDKFISYKALLSACITYSE 401
A+ MP ++ S+ A++SA ++ +
Sbjct: 372 ESAQRVFNDMPRKND-ASWNAMISALASHGK 401
>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 169/557 (30%), Positives = 270/557 (48%), Gaps = 95/557 (17%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH + + D + N+L+ Y ++ D++ LF+ RD+ SWNT++S ++
Sbjct: 215 LGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFS 273
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-------- 112
E L F+ ++ EG+ D +T+ + AC+ LE+L GK +H Y +
Sbjct: 274 QSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENS 333
Query: 113 -VG-----------------------LEYMLNMENALLLMYAKCKEMDEALRLFDEM--- 145
VG L + + NA++ YA+ ++AL LF EM
Sbjct: 334 FVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKV 393
Query: 146 ------------------------------------GSRRNIVSLNILINGYIDMELVDL 169
G + + N L++ Y M +D+
Sbjct: 394 AGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDI 453
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT--------------- 214
+ +FD + +D V W +M+ G V + + AL L +M T
Sbjct: 454 SETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGP 513
Query: 215 --PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
P+ +++VL C++L+ + G+ +H + ++N + D V +AL+DMY+KCG L +
Sbjct: 514 YKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSR 573
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM----ERKG-IKPNEATFVSVLAA 327
F + K+V+TW +I +G G EAL +F M R G KPNE TF++V AA
Sbjct: 574 RVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAA 633
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE-DKF 386
C HSGLI+EG LF RM + V+PT +H+ C+VDLL RAG L +A E + MPAE DK
Sbjct: 634 CSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKV 693
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
++ +LL AC + +LG+ A N++ L YVLLSN Y+ G W + E R+NM
Sbjct: 694 GAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNM 753
Query: 447 KELQTRKKPGNSIIDLK 463
+++ +K+PG S I+ +
Sbjct: 754 RQMGVKKEPGCSWIEFR 770
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 117/428 (27%), Positives = 198/428 (46%), Gaps = 53/428 (12%)
Query: 2 GKGLHAHVTKTAL-DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +HA K S + V N+L++ YG+ D +FD++ RD SWN+ ++
Sbjct: 111 GEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALC 170
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLH---YGKTVHCYATKVGLEY 117
F + L F+ + E + TLV + AC+ L +H GK +H Y+ +VG +
Sbjct: 171 RFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQK 230
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
NAL+ MYAK +D++ LF +
Sbjct: 231 TFT-NNALMAMYAKLGRVDDSKALF--------------------------------ESF 257
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
VD+D+V W +M+ ++ + EAL F+ M+ EGV D + SVL ACS L L G+
Sbjct: 258 VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 317
Query: 238 LVHRFILQNN-ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+H ++L+NN + +++FV +AL+DMY C +E F + + W MI G A
Sbjct: 318 EIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARN 377
Query: 297 GLGNEALRVFYQMER-KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI- 354
GL +AL +F +M + G+ PN T SV+ AC H C+ F ++ +
Sbjct: 378 GLDEKALILFIEMIKVAGLLPNTTTMASVMPACVH-------CEAFSNKESIHGYAVKLG 430
Query: 355 ---EHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
+ +V L+D+ SR G + +E M D+ +S+ +++ + + +
Sbjct: 431 FKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDR-VSWNTMITGYVLSGRYSNALVLL 489
Query: 410 NNMMKLGN 417
+ M ++ N
Sbjct: 490 HEMQRMEN 497
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 124/290 (42%), Gaps = 37/290 (12%)
Query: 45 PFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
P R SW + +D E + + ++ G D + A + L+ L G+
Sbjct: 53 PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112
Query: 105 TVHCYATKVGL-EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
+H A K G + + N L+ MY KC + + +
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCK----------------------- 149
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223
VFD I D+D V W S + + ++ E+ALE F+ M E + +VSV
Sbjct: 150 ---------VFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSV 200
Query: 224 LSACSSLS---NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC 280
ACS+L L+ G+ +H + L+ Q F AL+ MY+K G ++++ F
Sbjct: 201 ALACSNLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVD 259
Query: 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
+D+V+W TMI + +EAL F M +G++ + T SVL AC H
Sbjct: 260 RDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSH 309
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 113/280 (40%), Gaps = 48/280 (17%)
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W + ++ EA+ + +M G PD +VL A S L +L+ G +H +
Sbjct: 60 WVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAV 119
Query: 245 QNNI-TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ + V L++MY KCG + + F + +D V+W + I L + +AL
Sbjct: 120 KFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQAL 179
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITE---GCQL-------------------- 340
F M+ + ++ + T VSV AC + G++ G QL
Sbjct: 180 EAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTNNALMA 239
Query: 341 -FRRMGGVYRVQPTIEHFV--------CLVDLLSRAGLLYQAEEFIKIMPAED---KFIS 388
+ ++G V + E FV ++ S++ +A F ++M E ++
Sbjct: 240 MYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVT 299
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428
++L AC D+GK++ AYVL +N
Sbjct: 300 IASVLPACSHLERLDVGKEI------------HAYVLRNN 327
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 165/510 (32%), Positives = 251/510 (49%), Gaps = 83/510 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK H + + +++VGN L+ Y + + +A +F MP +DV SWN +++ Y+
Sbjct: 247 LGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYS 306
Query: 61 D---FSD------------------------SG--------EVLILFKQLIFEGIVADKI 85
F D SG E L + +Q++ GI +++
Sbjct: 307 QIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEV 366
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME-------NALLLMYAKCKEMDEA 138
TL+ + S CA + L +GK +HCYA K ++ N N L+ MYAKCK+
Sbjct: 367 TLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKK---- 422
Query: 139 LRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK--DIVLWRSMMHGCVKAK 196
VD+AR +FD + K D+V W M+ G +
Sbjct: 423 ----------------------------VDIARAMFDSLSPKERDVVTWTVMIGGYSQHG 454
Query: 197 QPEEALELFKKMIDEG--VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA-- 252
+ALEL +M +E P+ + L AC+SL+ L G+ +H + L+N Q+A
Sbjct: 455 DANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQ--QNAVP 512
Query: 253 -FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
FV LIDMY+KCG + +A + F K+ VTWT+++ G +G G EAL +F +M R
Sbjct: 513 LFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRR 572
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY 371
G K + T + VL AC HSG+I +G + F RM + V P EH+ CLVDLL RAG L
Sbjct: 573 IGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLN 632
Query: 372 QAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431
A I+ MP E + + ALLS C + + +LG+ A + +L + + +Y LLSN YA
Sbjct: 633 AALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYA 692
Query: 432 LEGHWTEVAEARRNMKELQTRKKPGNSIID 461
G W +V R M+ +K+PG S ++
Sbjct: 693 NAGRWKDVTRIRSLMRHKGIKKRPGCSWVE 722
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 193/385 (50%), Gaps = 21/385 (5%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G HA T S+++VGN+L+ Y R +DAR +FD+MP DV SWN+++ Y
Sbjct: 146 GDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAK 205
Query: 62 FSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
L +F ++ E G D ITLV + CA + GK H +A + +
Sbjct: 206 LGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMF 265
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM----ELVDLAREVFDE 176
+ N L+ MYAK MDEA +F M +++VS N ++ GY + + V L ++ +E
Sbjct: 266 VGNCLVDMYAKFGMMDEANTVFSNM-PVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEE 324
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ D+V W + + G + EAL + ++M+ G+ P+E ++SVLS C+S+ L +G
Sbjct: 325 KIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384
Query: 237 RLVHRFIL-------QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK--DVVTWT 287
+ +H + + +N + V LIDMY+KC ++ A F K DVVTWT
Sbjct: 385 KEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWT 444
Query: 288 TMIEGLANYGLGNEALRVFYQM--ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
MI G + +G N+AL + +M E +PN T L AC ++ G Q+
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAY-- 502
Query: 346 GVYRVQPTIEHFV--CLVDLLSRAG 368
+ Q + FV CL+D+ ++ G
Sbjct: 503 ALRNQQNAVPLFVSNCLIDMYAKCG 527
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 149/352 (42%), Gaps = 70/352 (19%)
Query: 24 LIHFYGRMALFTDARVLFDKMPFRDVG--SWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
LI Y + + A L + P D G WN+L+ Y + + + L F +
Sbjct: 65 LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
D T +F AC + + G + H + G + + NAL+ MY++C + +A ++
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKV 184
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
FDEM ++VS N +I Y K +P+ A
Sbjct: 185 FDEM-PVWDVVSWNSIIESY-------------------------------AKLGKPKMA 212
Query: 202 LELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
LE+F KM +E G PD+ +V+VL C+S+ G+ H F + + + Q+ FV L+D
Sbjct: 213 LEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVD 272
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTM------------------------------- 289
MY+K G ++EA F KDVV+W M
Sbjct: 273 MYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVT 332
Query: 290 ----IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
I G A GLG EAL V QM GIKPNE T +SVL+ C G + G
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 15/282 (5%)
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNI---LINGYIDMELVDLAREVFDEIVDKD--IVLW 185
KCK + + ++L + I++LN+ LI+ YI + + A + D + W
Sbjct: 37 KCKTISQ-VKLIHQKLLSFGILTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHW 95
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
S++ + + L F M TPD V AC +S+++ G H
Sbjct: 96 NSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRV 155
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
+ FV AL+ MYS+CGSL +A F + DVV+W ++IE A G AL +
Sbjct: 156 TGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEM 215
Query: 306 FYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH-FV--CLV 361
F +M + G +P++ T V+VL C G + G Q G I++ FV CLV
Sbjct: 216 FSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFH----GFAVTSEMIQNMFVGNCLV 271
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
D+ ++ G++ +A MP +D +S+ A+++ F+
Sbjct: 272 DMYAKFGMMDEANTVFSNMPVKD-VVSWNAMVAGYSQIGRFE 312
>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
Length = 924
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 150/465 (32%), Positives = 260/465 (55%), Gaps = 11/465 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH TK+ +I V N+ I YG+ +A +FD+M +D SWN +++ +
Sbjct: 402 GLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQ 461
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + L + ++ G+ D+ T + ACA + L++G +H K+G+ +
Sbjct: 462 NEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAG-DSLNHGMEIHTTIVKLGMASNPYI 520
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNIL-INGYIDM-ELVDLAREVFDEIVD 179
++L+ MY+KC +DEA ++ N + + I N Y + E ++ + + D V
Sbjct: 521 GSSLVDMYSKCGMIDEAEKI-------HNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQ 573
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+ IV W +++ G V KQ E+A F +M++ G+TPD+ +VL C++L+++ G+ +
Sbjct: 574 EMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANLASIGLGKQI 633
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +++ + D ++ + L+DMYSKCG+L ++ + F K +D VTW MI G A++G+G
Sbjct: 634 HAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVTWNAMICGYAHHGMG 693
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA+++F M I PN ATFVS+L AC H GL+ G F M Y + P +EH+
Sbjct: 694 EEAIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERGLDYFHMMKKEYGLDPRLEHYSN 753
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC-ITYSEFDLGKKVANNMMKLGNQ 418
+VD+L ++G + +A E I+ MP E + ++ LLSAC I + + + AN +++L Q
Sbjct: 754 MVDILGKSGEVEKALELIQEMPFEADDVIWRTLLSACKINRNNVEAAEVAANALLRLDPQ 813
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+LLSN YA G W + +E R M+ + +K+PG S ++++
Sbjct: 814 DSSTYILLSNIYADAGMWDKASELRTAMRSDKLKKEPGCSWVEIR 858
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 168/371 (45%), Gaps = 63/371 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM---- 56
+GK HAH+ + ++V N L+ Y A LFD MP RDV SWN ++
Sbjct: 67 LGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGMPLRDVVSWNAMIFGYA 126
Query: 57 ------------------------SIYNDFSDSGEVL---ILFKQLIFEGIVADKITLVI 89
S+ + F +GE L +F ++ G+ D + +
Sbjct: 127 ASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEMGRSGVEFDNKSFSV 186
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ C+ LE G +H A ++G + + +ALL MYAKCK +DE+
Sbjct: 187 ILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESF---------- 236
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
VF + K+ + W +++ GCV+ + L++FK+M
Sbjct: 237 ----------------------TVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQ 274
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
GV + + SVL +C++L +L+ G +H L+++ +D V+TA +DMY+KC +++
Sbjct: 275 KVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQ 334
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+A F ++ ++ ++ MI G + G AL +F ++ + + +E + L AC
Sbjct: 335 DAQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACA 394
Query: 330 HSGLITEGCQL 340
++EG QL
Sbjct: 395 TVKGLSEGLQL 405
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 114/447 (25%), Positives = 196/447 (43%), Gaps = 70/447 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G +H + D+D+ G++L+ Y + ++ +F MP ++ SW+ +++ +
Sbjct: 199 LGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCV 258
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N+F D G L +FK++ G+ + + +CA L L G +H +A K
Sbjct: 259 QNNFLDGG--LKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKD 316
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ A L MYAKC M +A RLFD M N+ S N +I GY
Sbjct: 317 GIVRTATLDMYAKCNNMQDAQRLFD-MSENLNLQSYNAMITGY----------------- 358
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+ AL LF+K+ + DE + L AC+++ L G
Sbjct: 359 --------------SQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQ 404
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++N +++ V A IDMY KC +L+EA F + KD V+W +I
Sbjct: 405 LHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEE 464
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMGGVYRVQPTIE 355
++ L + M R G++P+E TF SVL AC L G ++ ++G P I
Sbjct: 465 RSKTLNILVSMLRSGMEPDEYTFGSVLKACAGDSL-NHGMEIHTTIVKLG--MASNPYIG 521
Query: 356 HFVCLVDLLSRAGLLYQAEE-----FIKIMPA---------------------EDKFISY 389
LVD+ S+ G++ +AE+ FI I + ++ +S+
Sbjct: 522 S--SLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVSW 579
Query: 390 KALLSACITYSEFDLGKKVANNMMKLG 416
A++S + + + ++ N MM++G
Sbjct: 580 NAIISGYVMRKQSEDAQRFFNRMMEMG 606
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 126/251 (50%), Gaps = 1/251 (0%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+F CA+ GK H + G + + N LL +Y C + A +LFD M R
Sbjct: 55 VFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGM-PLR 113
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
++VS N +I GY + A F+ + +D+V W SM+ G ++ + E++++F +M
Sbjct: 114 DVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEMG 173
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
GV D + +L CS L N + G +H L+ D +AL+DMY+KC L+
Sbjct: 174 RSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLD 233
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
E+ FY K+ ++W+ +I G + L++F +M++ G+ +++ + SVL +C
Sbjct: 234 ESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCA 293
Query: 330 HSGLITEGCQL 340
+ G QL
Sbjct: 294 TLPDLRLGTQL 304
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HAHV K L D+Y+ ++L+ Y + D+R++F+K P RD +WN ++ Y
Sbjct: 629 LGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVTWNAMICGYA 688
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
E + LF+ ++ I+ + T V L ACA + + G H + GL+ L
Sbjct: 689 HHGMGEEAIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERGLDYFHMMKKEYGLDPRL 748
Query: 120 NMENALLLMYAKCKEMDEALRLFDEM 145
+ ++ + K E+++AL L EM
Sbjct: 749 EHYSNMVDILGKSGEVEKALELIQEM 774
>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/464 (32%), Positives = 248/464 (53%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H K L + + N+L+ Y + +A +FD R+ +W+ +++ Y+
Sbjct: 239 LGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYS 298
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+S E + LF ++ GI + T+V + +AC+ + L GK +H + K+G E L
Sbjct: 299 QNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLF 358
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
AL+ MYAK + +A R+ FD + ++
Sbjct: 359 ATTALVDMYAKAGCLADA--------------------------------RKGFDCLQER 386
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+ LW S++ G V+ EEAL L+++M G+ P++ M SVL ACSSL+ L+ G+ VH
Sbjct: 387 DVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVH 446
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + + +AL MYSKCGSLE+ + F +T KDVV+W MI GL++ G G+
Sbjct: 447 GHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGD 506
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F +M +G++P++ TFV++++AC H G + G F M + P ++H+ C+
Sbjct: 507 EALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACM 566
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLLSRAG L +A+EFI+ + ++ LLSAC + + +LG +M LG++
Sbjct: 567 VDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRES 626
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YV LS Y G +V ++M+ K+ G S I+LK+
Sbjct: 627 STYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKN 670
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 121/409 (29%), Positives = 192/409 (46%), Gaps = 60/409 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G+ HA V K + DIYV SL+ Y + L D +F MP R+ +W+T++S Y
Sbjct: 136 VGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYA 195
Query: 60 --NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
++ +V LF + EG +D + +L S A + + G+ +HC K GL
Sbjct: 196 TRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATI-YVGLGRQIHCITIKNGLLG 254
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + NAL+ MY+KC+ ++EA ++FD G R +I
Sbjct: 255 FVALSNALVTMYSKCESLNEACKMFDSSGDRNSIT------------------------- 289
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
W +M+ G + + EA++LF +M G+ P E +V VL+ACS + L+ G+
Sbjct: 290 -------WSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGK 342
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMIEGLA 294
+H F+L+ + F TAL+DMY+K G L +A F DC +DV WT++I G
Sbjct: 343 QLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGF---DCLQERDVALWTSLISGYV 399
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
EAL ++ +M+ GI PN+ T SVL AC + G Q+ TI
Sbjct: 400 QNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGH---------TI 450
Query: 355 EHFV--------CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+H L + S+ G L + P +D +S+ A++S
Sbjct: 451 KHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKD-VVSWNAMISG 498
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 116/455 (25%), Positives = 208/455 (45%), Gaps = 74/455 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + +T + I N L++FY + A +F+ + +DV SWN+L++ Y+
Sbjct: 33 GRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQ 92
Query: 62 ---FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
S S V+ LF+++ + I+ + TL +F A + L+ G+ H K+
Sbjct: 93 NGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGD 152
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ ++ +L+ MY K +++ L++F M RN + + +++GY V+ A +VF+
Sbjct: 153 IYVDTSLVGMYCKAGLVEDGLKVFAYM-PERNTYTWSTMVSGYATRGRVEEAIKVFN--- 208
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
LF + +EG D V +VLS+ ++ + GR
Sbjct: 209 -------------------------LFLREKEEGSDSDY-VFTAVLSSLAATIYVGLGRQ 242
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++N + + AL+ MYSKC SL EA F + ++ +TW+ M+ G + G
Sbjct: 243 IHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGE 302
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMGGVYRVQPTIE 355
EA+++F +M GIKP+E T V VL AC + EG QL ++G + T
Sbjct: 303 SLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFAT-- 360
Query: 356 HFVCLVDLLSRAGLLYQAEE-------------------FIKIMPAEDKFISYK------ 390
LVD+ ++AG L A + +++ E+ I Y+
Sbjct: 361 --TALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAG 418
Query: 391 ---------ALLSACITYSEFDLGKKVANNMMKLG 416
++L AC + + +LGK+V + +K G
Sbjct: 419 IIPNDPTMASVLKACSSLATLELGKQVHGHTIKHG 453
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 9/203 (4%)
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ P ++ L+ S NL GR VH I++ + L++ Y+KCG L +A
Sbjct: 10 LNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAH 69
Query: 273 VTFYKTDCKDVVTWTTMIEGLA-NYGLGNE--ALRVFYQMERKGIKPNEATFVSVLAACR 329
F CKDVV+W ++I G + N G+ + +++F +M + I PN T + A
Sbjct: 70 SIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAES 129
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
T G Q V ++ + +V LV + +AGL+ + MP + +
Sbjct: 130 SLQSSTVGRQAHAL---VVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTY- 185
Query: 388 SYKALLSACITYSEFDLGKKVAN 410
++ ++S T + KV N
Sbjct: 186 TWSTMVSGYATRGRVEEAIKVFN 208
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/451 (33%), Positives = 240/451 (53%), Gaps = 11/451 (2%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
D ++ N L+ Y + + DAR LFD++P RD+ SWNT++S Y D + LF+
Sbjct: 185 DWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFE- 243
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLNMENALLLMYAKCK 133
E V D T + A + L + V K + Y N ++ YA+ K
Sbjct: 244 ---ESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSY-----NVMIAGYAQYK 295
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
MD LF+EM NI S NI+I+GY + AR +FD + +D V W +++ G
Sbjct: 296 RMDMGRELFEEM-PFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYA 354
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ EEA+ + +M +G + + LSAC+ ++ L+ G+ VH +++ +
Sbjct: 355 QNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCL 414
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
V AL+ MY KCG ++EA F KD+V+W TM+ G A +G G +AL VF M G
Sbjct: 415 VGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAG 474
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
+KP+E T V VL+AC H+GL G + F M Y + P +H+ C++DLL RAG L +A
Sbjct: 475 VKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEA 534
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE 433
+ I+ MP E ++ ALL A + +LG++ A + K+ + YVLLSN YA
Sbjct: 535 QNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAAS 594
Query: 434 GHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
G W +V++ R M+++ +K PG S +++++
Sbjct: 595 GRWVDVSKMRLKMRQIGVQKTPGYSWVEVQN 625
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 184/395 (46%), Gaps = 28/395 (7%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D++ N ++ Y R DAR+LFD MP +DV SWN ++S Y E +F ++
Sbjct: 94 DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP 153
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
+ + I+ L +A R +L + + + +K E L N L+ Y K +
Sbjct: 154 HK----NSISWNGLLAAYVRSGRLEEARRL--FESKSDWE--LISCNCLMGGYVKRNMLG 205
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+A +LFD++ R+++S N +I+GY + AR +F+E +D+ W +M++ V+
Sbjct: 206 DARQLFDQI-PVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDG 264
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL-VHRFILQNNITQDAFVK 255
+EA +F +M + E+ +V+ A + QY R+ + R + + +
Sbjct: 265 MLDEARRVFDEMPQK-----REMSYNVMIAGYA----QYKRMDMGRELFEEMPFPNIGSW 315
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
+I Y + G L +A F +D V+W +I G A GL EA+ + +M+R G
Sbjct: 316 NIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGES 375
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQA 373
N +TF L+AC + G Q+ G V R V LV + + G + +A
Sbjct: 376 LNRSTFCCALSACADIAALELGKQVH---GQVVRTGYEKGCLVGNALVGMYCKCGCIDEA 432
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
+ + + +D +S+ +L+ Y+ G++
Sbjct: 433 YDVFQGVQHKD-IVSWNTMLAG---YARHGFGRQA 463
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 140/334 (41%), Gaps = 68/334 (20%)
Query: 136 DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE------------------- 176
D AL +FD M RN VS N +I+GY+ LAR++FD+
Sbjct: 50 DLALCVFDAM-PLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARN 108
Query: 177 ------------IVDKDIVLWRSMMHGCVKAKQPEEALELFKKM---------------I 209
+ +KD+V W +M+ G V++ +EA ++F +M +
Sbjct: 109 RRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYV 168
Query: 210 DEGVTPDEEVMVSVLSACSSLS-NLQYGRLVHRFILQNN-------ITQDAFVKTALIDM 261
G + + S +S N G V R +L + +D +I
Sbjct: 169 RSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISG 228
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y++ G L +A F ++ +DV TWT M+ G+ +EA RVF +M +K E ++
Sbjct: 229 YAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQK----REMSY 284
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
++A + G +LF M P I + ++ + G L QA +MP
Sbjct: 285 NVMIAGYAQYKRMDMGRELFEEM-----PFPNIGSWNIMISGYCQNGDLAQARNLFDMMP 339
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
D +S+ A+++ Y++ L ++ N ++++
Sbjct: 340 QRDS-VSWAAIIAG---YAQNGLYEEAMNMLVEM 369
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H V +T + VGN+L+ Y + +A +F + +D+ SWNT+++ Y
Sbjct: 396 LGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYA 455
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L +F+ +I G+ D+IT+V + SAC+ H T G EY +
Sbjct: 456 RHGFGRQALTVFESMITAGVKPDEITMVGVLSACS-----------HTGLTDRGTEYFHS 504
Query: 121 M 121
M
Sbjct: 505 M 505
>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
Length = 877
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 157/463 (33%), Positives = 239/463 (51%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + K DSD Y+G L+ Y + DAR +FD M RD+ N L+S +
Sbjct: 321 LGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCS 380
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF +L EG+ ++ TL + + A LE + VH A K+G + +
Sbjct: 381 HGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAH 440
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N L+ Y KC + +A R VF+E
Sbjct: 441 VVNGLIDSYWKCSCLSDANR--------------------------------VFEECSSG 468
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DI+ SM+ + E A++LF +M+ +G+ PD V+ S+L+AC+SLS + G+ VH
Sbjct: 469 DIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVH 528
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ DAF AL+ Y+KCGS+E+A + F + VV+W+ MI GLA +G G
Sbjct: 529 AHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 588
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F +M +GI PN T SVL AC H+GL+ E + F M ++ + T EH+ C+
Sbjct: 589 RALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCM 648
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLL RAG L A E + MP + + ALL A + + +LGK A + L +
Sbjct: 649 IDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKS 708
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLL+N YA G W EVA+ R+ MK+ +K+P S I++K
Sbjct: 709 GTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVK 751
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 157/326 (48%), Gaps = 33/326 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLMSIY 59
+G +HA T SD++V N+L+ YG DAR +F++ R+ SWN LMS Y
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAY 177
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
G+ + +F ++++ GI + + +AC + G+ VH +
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVR------- 230
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
MG +++ + N L++ Y+ M VD+A +F+++ D
Sbjct: 231 -------------------------MGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPD 265
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W +++ GCV A+EL +M G+ P+ + S+L ACS GR +
Sbjct: 266 SDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQI 325
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H F+++ N D ++ L+DMY+K L++A F +D++ +I G ++ G
Sbjct: 326 HGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRH 385
Query: 300 NEALRVFYQMERKGIKPNEATFVSVL 325
+EAL +FY++ ++G+ N T +VL
Sbjct: 386 DEALSLFYELRKEGLGVNRTTLAAVL 411
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 175/397 (44%), Gaps = 42/397 (10%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
G H H + S N LI FY + AR +FD++P SW++L++ Y++
Sbjct: 22 PGAHLHASLLKSGSLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNN 81
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ F + EG+ ++ L ++ C +L G VH A G + +
Sbjct: 82 GLPRSAIQAFHGMRAEGVCCNEFALPVVLK-CVPDARL--GAQVHAMAMATGFGSDVFVA 138
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI-VDKD 181
NAL+ MY MD+A R VF+E +++
Sbjct: 139 NALVAMYGGFGFMDDA--------------------------------RRVFNEADSERN 166
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M VK Q +A+++F +M+ G+ P E V++AC+ N++ GR VH
Sbjct: 167 AVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHA 226
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+++ +D F AL+DMY K G ++ A V F K DVV+W +I G G +
Sbjct: 227 MVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHR 286
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF--VC 359
A+ + QM+ G+ PN T S+L AC +G G Q+ G + + + + V
Sbjct: 287 AIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIH---GFMIKANADSDDYIGVG 343
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
LVD+ ++ L A + M D I AL+S C
Sbjct: 344 LVDMYAKNHFLDDARKVFDWMFHRD-LILCNALISGC 379
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 110/247 (44%), Gaps = 12/247 (4%)
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
N LI+ Y AR VFDEI D V W S++ P A++ F M EGV
Sbjct: 41 NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
+E + VL + + + G VH + D FV AL+ MY G +++A
Sbjct: 101 CNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157
Query: 275 FYKTDC-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F + D ++ V+W ++ +A++VF +M GI+P E F V+ AC S
Sbjct: 158 FNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217
Query: 334 ITEGCQLFR---RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
I G Q+ RMG + LVD+ + G + A + MP D +S+
Sbjct: 218 IEAGRQVHAMVVRMG----YDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSD-VVSWN 272
Query: 391 ALLSACI 397
AL+S C+
Sbjct: 273 ALISGCV 279
>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 919
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 144/464 (31%), Positives = 245/464 (52%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ K SD+YV LI Y + A+ + D + +DV SW ++++ Y
Sbjct: 363 LGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYV 422
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L FK++ GI D I L SACA ++ +H G +H G ++
Sbjct: 423 QHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVS 482
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N L+ +YA+C EA F+ I K
Sbjct: 483 IWNGLVYLYARCGISKEAF--------------------------------SSFEAIEHK 510
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ + W ++ G ++ EEAL++F KM G + VS +SA ++L++++ G+ +H
Sbjct: 511 EGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIH 570
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ T + + ALI +Y KCGS+E+A + F++ ++ V+W T+I + +G G
Sbjct: 571 ARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGL 630
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F QM+++G+KP++ TFV VL AC H GL+ EG F+ M + + P +H+ C+
Sbjct: 631 EALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACV 690
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L RAG L +A+ F++ MP + ++ LLSAC + ++G+ A ++++L
Sbjct: 691 VDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDS 750
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+YVLLSN YA+ G W + R+ MK+ RK+PG S I++K+
Sbjct: 751 ASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKN 794
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 132/495 (26%), Positives = 227/495 (45%), Gaps = 70/495 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H V K S+ +VGN+LI Y R F A +F M + D ++NTL+S +
Sbjct: 161 LGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHA 220
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
L +F ++ G+ D +T+ L +AC+ + L GK +H Y K G+
Sbjct: 221 QCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYI 280
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
ME +LL +Y K +++EAL++FD G R N+V N+++ Y ++ DLA+
Sbjct: 281 MEGSLLDLYVKSGDIEEALQIFDS-GDRTNVVLWNLMLVAYGQID--DLAK--------- 328
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ ++F +M+ GV P++ +L C+ + G +H
Sbjct: 329 --------------------SFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIH 368
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++N D +V LIDMYSK G L++A + KDVV+WT+MI G +
Sbjct: 369 SLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCK 428
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM-------------GGV 347
EAL F +M+ GI P+ S ++AC + +G Q+ R+ G V
Sbjct: 429 EALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLV 488
Query: 348 YRVQ------------PTIEH-----FVCLVDLLSRAGLLYQA-EEFIKIMPAEDKF--I 387
Y IEH + L+ +++GL +A + F+K+ A K+
Sbjct: 489 YLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVF 548
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN-FYALEGHWTEVAEARRNM 446
++ + +SA ++ GK++ ++K G S +SN +L G + +A+ +
Sbjct: 549 TFVSSISASANLADIKQGKQIHARVIKTGYTSETE---ISNALISLYGKCGSIEDAKMDF 605
Query: 447 KELQTRKK-PGNSII 460
E+ R + N+II
Sbjct: 606 FEMTKRNEVSWNTII 620
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 187/395 (47%), Gaps = 34/395 (8%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA L +GN LI Y + AR +F+++ RD SW ++S Y
Sbjct: 64 IHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGL 123
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E + L++++ G+V L + SAC + E G+ +H K G + NA
Sbjct: 124 GEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNA 183
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ +Y +C+ A R+F +M + V+ N LI+G+
Sbjct: 184 LISLYLRCRSFRLADRVFCDM-LYCDSVTFNTLISGH----------------------- 219
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
+ + AL +F +M G++PD + S+L+ACS++ +L+ G+ +H ++L
Sbjct: 220 --------AQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLL 271
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ ++ D ++ +L+D+Y K G +EEAL F D +VV W M+ ++
Sbjct: 272 KAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFD 331
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+FY+M G++PN+ T+ +L C H+G I G Q+ + Q + L+D+
Sbjct: 332 IFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQI-HSLTIKNGFQSDMYVSGVLIDMY 390
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
S+ G L +A+ + ++ +D +S+ ++++ + +
Sbjct: 391 SKYGWLDKAQRILDMIEEKD-VVSWTSMIAGYVQH 424
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 160/333 (48%), Gaps = 45/333 (13%)
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
N+LI+ Y V AR VF+E+ +D V W +++ G + EEA+ L+++M GV
Sbjct: 81 NLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVV 140
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
P V+ S+LSAC+ Q GRL+H + + + FV ALI +Y +C S A
Sbjct: 141 PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRV 200
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F D VT+ T+I G A G G+ AL +F +M+ G+ P+ T S+LAAC G +
Sbjct: 201 FCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDL 260
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEE----------------- 375
+G QL + + ++++ + L+DL ++G + +A +
Sbjct: 261 RKGKQLHSYL---LKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLML 317
Query: 376 ---------------FIKIMPA---EDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
F +++ A +KF +Y +L C E LG+++ + +K G
Sbjct: 318 VAYGQIDDLAKSFDIFYRMLAAGVRPNKF-TYPCMLRTCTHTGEIGLGEQIHSLTIKNGF 376
Query: 418 QSHEAYV--LLSNFYALEGHWTEVAEARRNMKE 448
QS + YV +L + Y+ G W + A+ +M E
Sbjct: 377 QS-DMYVSGVLIDMYSKYG-WLDKAQRILDMIE 407
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 144/461 (31%), Positives = 236/461 (51%), Gaps = 32/461 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + K +SD V N LI Y + D +F+ M D+ SWN L+S + D
Sbjct: 171 GQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYD 230
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
G +F Q++ EG + T + + +C+ L +GK VH + K + +
Sbjct: 231 SQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFV 290
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYAK + +++A FD +V++D
Sbjct: 291 GTALVDMYAKARCLEDA--------------------------------GVAFDRLVNRD 318
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
I W ++ G + Q E+A++ F++M EG+ P+E + S LS CS ++ L+ GR +H
Sbjct: 319 IFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHA 378
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++ D FV +AL+D+Y KCG +E A F +D+V+W T+I G + +G G +
Sbjct: 379 VAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEK 438
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL F M +GI P+EATF+ VL+AC GL+ EG + F M +Y + P+IEH+ C+V
Sbjct: 439 ALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMV 498
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L RAG + + FI+ M + ++ +L AC + D G+K A + ++
Sbjct: 499 DILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDS 558
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+Y+LLSN +A +G W +V R M +K+PG S +++
Sbjct: 559 SYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEV 599
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 121/413 (29%), Positives = 201/413 (48%), Gaps = 49/413 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LHA ++ + D ++G SL+ Y + DA +F K+ DV +W+ +++ +
Sbjct: 70 GKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQ 129
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E LF + +G ++ TL L S + L YG+++H K G E +
Sbjct: 130 QGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLV 189
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L++MY K + +++ ++F+ M + ++VS N L++G+ D +
Sbjct: 190 SNPLIMMYMKSRCVEDGNKVFEAM-TNPDLVSWNALLSGFYDSQTC-------------- 234
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ P +F +M+ EG P+ +SVL +CSSL + ++G+ VH
Sbjct: 235 -------------GRGP----RIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHA 277
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I++N+ D FV TAL+DMY+K LE+A V F + +D+ +WT +I G A +
Sbjct: 278 HIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEK 337
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF---- 357
A++ F QM+R+GIKPNE T S L+ C H + G QL + V HF
Sbjct: 338 AVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQL-------HAVAVKAGHFGDIF 390
Query: 358 --VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
LVDL + G + AE K + + D +S+ ++S YS+ G+K
Sbjct: 391 VGSALVDLYGKCGCMEHAEAIFKGLISRD-IVSWNTIISG---YSQHGQGEKA 439
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 134/292 (45%), Gaps = 32/292 (10%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
A LF MP ++ SWN L++ Y D +VL LF ++ K TL + CA
Sbjct: 4 AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
L GK +H A + G E + +L+ MY+KC + +AL+
Sbjct: 64 TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALK---------------- 107
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
VF +I + D+V W +M+ G + +EA ELF M +G P+
Sbjct: 108 ----------------VFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPN 151
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
+ + S++S +++ +L+YG+ +H I + D V LI MY K +E+ F
Sbjct: 152 QFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFE 211
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
D+V+W ++ G + R+FYQM +G KPN TF+SVL +C
Sbjct: 212 AMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSC 263
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 99/171 (57%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
++LA +F + +K+ V W ++++G + ++ L+LF KM + + + +VL
Sbjct: 1 MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C++ +L+ G+++H L++ D F+ +L+DMYSKCG++ +AL F K DVV W
Sbjct: 61 CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+ MI GL G G EA +F+ M RKG +PN+ T S+++ + G + G
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYG 171
>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 733
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/461 (31%), Positives = 231/461 (50%), Gaps = 32/461 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H K D +V N+L Y + LF+KM DV SW TL+S Y
Sbjct: 244 GKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQ 303
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + FK++ + +K T + S+CA L +G+ +H + ++GL L++
Sbjct: 304 MGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSV 363
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+++ +Y+KC L+ A VF I KD
Sbjct: 364 ANSIITLYSKCG--------------------------------LLKSASLVFHGITRKD 391
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
I+ W +++ + +EA + M EG P+E + SVLS C S++ L+ G+ VH
Sbjct: 392 IISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHA 451
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+L I +A V +A+I MYSKCGS++EA F D+++WT MI G A +G E
Sbjct: 452 HLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQE 511
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ +F ++ G+KP+ F+ VL AC H+G++ G F M VYR+ P+ EH+ CL+
Sbjct: 512 AINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLI 571
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +AE I+ MP + + LL AC + + D G+ A +++L S
Sbjct: 572 DLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAG 631
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ L+N YA +G W E A R+ MK K+ G S +++
Sbjct: 632 THITLANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNV 672
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/416 (25%), Positives = 193/416 (46%), Gaps = 37/416 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH K+ L ++V ++LI Y ++ +F+KM R+V SW +++
Sbjct: 143 GELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVH 202
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L+ F ++ + D T I A A LH+GK +H K G + +
Sbjct: 203 AGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFV 262
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L MY KC + D +RLF++M ++VS LI+ Y+ M
Sbjct: 263 INTLATMYNKCGKPDYVMRLFEKM-RMPDVVSWTTLISTYVQM----------------- 304
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ E A+E FK+M V+P++ +V+S+C++L+ ++G +H
Sbjct: 305 --------------GEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHG 350
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+L+ + V ++I +YSKCG L+ A + F+ KD+++W+T+I + G E
Sbjct: 351 HVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKE 410
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A M R+G KPNE SVL+ C L+ +G Q+ + + + H ++
Sbjct: 411 AFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVH-SAII 469
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
+ S+ G + +A + M D IS+ A+++ Y+E ++ N K+ +
Sbjct: 470 SMYSKCGSVQEASKIFNGMKIND-IISWTAMING---YAEHGYSQEAINLFEKISS 521
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/423 (25%), Positives = 190/423 (44%), Gaps = 69/423 (16%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL-IFEGIVADKITLVILFSACA 95
AR +FDKM RD SW TL++ Y + SDS E LILF + + G D+ + + ACA
Sbjct: 76 ARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACA 135
Query: 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLN 155
+ +G+ +H ++ K GL + + + +AL+ MY K ++++ R
Sbjct: 136 LGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCR--------------- 180
Query: 156 ILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215
VF++++ +++V W +++ G V A E L F +M V
Sbjct: 181 -----------------VFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGY 223
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
D L A + S L +G+ +H ++ + +FV L MY+KCG + + F
Sbjct: 224 DSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLF 283
Query: 276 YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR------ 329
K DVV+WTT+I G A+ F +M + + PN+ TF +V+++C
Sbjct: 284 EKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAK 343
Query: 330 -----HSGLITEG-----------------CQLFRRMGGVYR--VQPTIEHFVCLVDLLS 365
H ++ G C L + V+ + I + ++ + S
Sbjct: 344 WGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYS 403
Query: 366 RAGLLYQAEEFIKIM----PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
+ G +A +++ M P ++F + ++LS C + + + GK+V +++ +G HE
Sbjct: 404 QGGYAKEAFDYLSWMRREGPKPNEF-ALSSVLSVCGSMALLEQGKQVHAHLLCIG-IDHE 461
Query: 422 AYV 424
A V
Sbjct: 462 AMV 464
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 115/231 (49%), Gaps = 5/231 (2%)
Query: 111 TKVGLEYMLNMENALLLMYAKCKEMDEAL---RLFDEMGSRRNIVSLNILINGYIDMELV 167
T+V L Y+ N L +C+E+ + + + S N++ LN + + +
Sbjct: 15 TRVALHYISN-RYILTGTATECRELIQQPIQEQPAENAYSVHNMLELNSELKQLVKQGQL 73
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV-LSA 226
AR +FD++ +D + W +++ G V A EAL LF M ++ M+SV L A
Sbjct: 74 CKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKA 133
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
C+ N+ +G L+H F +++ + FV +ALIDMY K G +E+ F K ++VV+W
Sbjct: 134 CALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSW 193
Query: 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
T +I GL + G E L F +M R + + TF L A S L+ G
Sbjct: 194 TAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHG 244
>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
Length = 877
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 157/463 (33%), Positives = 239/463 (51%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + K DSD Y+G L+ Y + DAR +FD M RD+ N L+S +
Sbjct: 321 LGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCS 380
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF +L EG+ ++ TL + + A LE + VH A K+G + +
Sbjct: 381 HGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAH 440
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N L+ Y KC + +A R VF+E
Sbjct: 441 VVNGLIDSYWKCSCLSDANR--------------------------------VFEECSSG 468
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DI+ SM+ + E A++LF +M+ +G+ PD V+ S+L+AC+SLS + G+ VH
Sbjct: 469 DIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVH 528
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ DAF AL+ Y+KCGS+E+A + F + VV+W+ MI GLA +G G
Sbjct: 529 AHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 588
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F +M +GI PN T SVL AC H+GL+ E + F M ++ + T EH+ C+
Sbjct: 589 RALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCM 648
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLL RAG L A E + MP + + ALL A + + +LGK A + L +
Sbjct: 649 IDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKS 708
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLL+N YA G W EVA+ R+ MK+ +K+P S I++K
Sbjct: 709 GTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVK 751
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 157/326 (48%), Gaps = 33/326 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLMSIY 59
+G +HA T SD++V N+L+ YG DAR +F++ R+ SWN LMS Y
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAY 177
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
G+ + +F ++++ GI + + +AC + G+ VH +
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVR------- 230
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
MG +++ + N L++ Y+ M VD+A +F+++ D
Sbjct: 231 -------------------------MGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPD 265
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W +++ GCV A+EL +M G+ P+ + S+L ACS GR +
Sbjct: 266 SDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQI 325
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H F+++ N D ++ L+DMY+K L++A F +D++ +I G ++ G
Sbjct: 326 HGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRH 385
Query: 300 NEALRVFYQMERKGIKPNEATFVSVL 325
+EAL +FY++ ++G+ N T +VL
Sbjct: 386 DEALSLFYELRKEGLGVNRTTLAAVL 411
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 174/397 (43%), Gaps = 42/397 (10%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
G H H + S N LI FY + AR FD++P SW++L++ Y++
Sbjct: 22 PGAHLHASLLKSGSLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNN 81
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ F + EG+ ++ L ++ C +L G VH A G + +
Sbjct: 82 GLPRSAIQAFHGMRAEGVCCNEFALPVVLK-CVPDARL--GAQVHAMAMATGFGSDVFVA 138
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI-VDKD 181
NAL+ MY MD+A R VF+E +++
Sbjct: 139 NALVAMYGGFGFMDDA--------------------------------RRVFNEADSERN 166
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M VK Q +A+++F +M+ G+ P E V++AC+ N++ GR VH
Sbjct: 167 AVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHA 226
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+++ +D F AL+DMY K G ++ A V F K DVV+W +I G G +
Sbjct: 227 MVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHR 286
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF--VC 359
A+ + QM+ G+ PN T S+L AC +G G Q+ G + + + + V
Sbjct: 287 AIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIH---GFMIKANADSDDYIGVG 343
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
LVD+ ++ L A + M D I AL+S C
Sbjct: 344 LVDMYAKNHFLDDARKVFDWMFHRD-LILCNALISGC 379
>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
Length = 735
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/463 (31%), Positives = 244/463 (52%), Gaps = 32/463 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +H + K L + V NSL+ Y + A +F+ R+ +W+ +++ Y
Sbjct: 238 MGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYA 297
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ + +F Q+ G + T V + +A + L L GK H K+G E +
Sbjct: 298 QNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIY 357
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+++AL+ MYAKC + +A +E FD++ +
Sbjct: 358 VKSALVDMYAKCGCIADA--------------------------------KEGFDQLYEV 385
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIVLW +M+ G V+ + EEAL L+ +M EG+ P + + S L AC+ ++ L+ G+ +H
Sbjct: 386 DIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLH 445
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I++ + A V +AL MYSKCG+LE+ + F + +DV+ W ++I G + G GN
Sbjct: 446 TQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGN 505
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F +M+ +G P+ TF+++L AC H GL+ G + F M Y + P ++H+ C+
Sbjct: 506 GALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACM 565
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+LSRAG+L +A++FI+ + + ++ +L AC + +FD+G +M+LG
Sbjct: 566 VDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDS 625
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AY+LLSN YA + W +V R M+ K PG S ++L
Sbjct: 626 SAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELN 668
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 163/331 (49%), Gaps = 35/331 (10%)
Query: 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL 75
S++YV SL++ Y ++ + +DAR +FD MP R+ SW+T+++ Y S E LF+ L
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFR-L 209
Query: 76 IFEGIVADKITLV--ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
+ E ++K V + SA + L G+ +H K GL +++EN+L+ MYAK
Sbjct: 210 MLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAG 269
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
M A +F+ R +I W +M+ G
Sbjct: 270 CMGAAFHVFESSRERNSIT--------------------------------WSAMITGYA 297
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ + + A+ +F +M G TP E V VL+A S L L G+ H +++ +
Sbjct: 298 QNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIY 357
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
VK+AL+DMY+KCG + +A F + D+V WT M+ G G EAL ++ +M+++G
Sbjct: 358 VKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEG 417
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
I P+++T S L AC + G QL ++
Sbjct: 418 IIPSKSTIASGLRACAGIAALEPGKQLHTQI 448
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 171/382 (44%), Gaps = 43/382 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRM--ALFTDARVLFDKMP--FRDVGSWNTLMS 57
G+ LHA K+ S V NSLI+FY + L A +FD +P RDV SWN+L+
Sbjct: 31 GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSLL- 89
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
N S + L + F +++ L + H +A
Sbjct: 90 --NPLSGHRPLDALSR---FRSMLSSSTVL----------------PSPHSFAAAFTAAA 128
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
A +A ++ A+ N+ L+N Y + +V AR VFD +
Sbjct: 129 RAASAPAGTAAHALACKIPSAV---------SNVYVCTSLLNMYCKLGIVSDARRVFDGM 179
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE-VMVSVLSACSSLSNLQYG 236
++ W +M+ G K EEA +LF+ M++E + E V +VLSA S L G
Sbjct: 180 PQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMG 239
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+H I+++ + V+ +L+ MY+K G + A F + ++ +TW+ MI G A
Sbjct: 240 EQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQN 299
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ---LFRRMGGVYRVQPT 353
G + A+ +F QM G P E TFV VL A G + G Q L ++G + VQ
Sbjct: 300 GEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLG--FEVQIY 357
Query: 354 IEHFVCLVDLLSRAGLLYQAEE 375
++ LVD+ ++ G + A+E
Sbjct: 358 VKS--ALVDMYAKCGCIADAKE 377
>gi|225432410|ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
mitochondrial-like [Vitis vinifera]
Length = 623
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 159/498 (31%), Positives = 250/498 (50%), Gaps = 38/498 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRM------------------------------ 31
G +HA V + S + VGNSLI YG+
Sbjct: 90 GMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTS 149
Query: 32 -ALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
LF ARV+FD MP + +WN ++S Y D L LFK++ + + D+ T L
Sbjct: 150 SGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSAL 209
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
+A L++ YG +H + K G + + N++L Y+K D+ +++F+ +G
Sbjct: 210 VNALCELQEPSYGYMMHGFIIKSGWVKAVEVSNSILSFYSKLGCKDDVMKVFESIGILTQ 269
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
VS N +I+ ++ + A VF +K++V W SM+ G + E+AL F KM++
Sbjct: 270 -VSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMME 328
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
+ PD+ +VL ACSSL+ L +G+++H I+ V L++MY+KCG ++
Sbjct: 329 NHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQG 388
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
+ F + KD+V+W M+ GL +G +AL ++ +M G+KP++ TF+ +L C H
Sbjct: 389 SNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSH 448
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI----KIMPAEDKF 386
SGLI +G LF M VY + EH VC+VDLL R G L QA E + + AE
Sbjct: 449 SGLIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSL 508
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
+ALL AC +SE +G + + Q +YVLLSN Y + G W E R+ M
Sbjct: 509 P--EALLGACFAHSEVRMGANLGEYLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTM 566
Query: 447 KELQTRKKPGNSIIDLKH 464
+ +K PG S I++++
Sbjct: 567 TDHGVKKMPGCSWIEVRN 584
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 165/355 (46%), Gaps = 34/355 (9%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFK 73
+ S ++ S I ++ T AR LFD+MP +D +WN +++ Y+ + L LF
Sbjct: 1 MHSHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFH 60
Query: 74 QLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
+ D+ T SACA L +L G +H G + L + N+L+ MY KC
Sbjct: 61 HMRIANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCL 120
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
A R+F+EM S N VS L+ Y L D+AR VFD + K + W M+ G
Sbjct: 121 SATSARRVFEEM-SIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYG 179
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ E L LFKKM ++ + PD+ ++++A L YG ++H FI+++ +
Sbjct: 180 QCGDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVE 239
Query: 254 VK-------------------------------TALIDMYSKCGSLEEALVTFYKTDCKD 282
V A+ID + K G EA + F K+
Sbjct: 240 VSNSILSFYSKLGCKDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKN 299
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
VV+WT+MI G A G G +AL F +M I+P++ TF +VL AC S L T G
Sbjct: 300 VVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHAC--SSLATLG 352
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 156/494 (31%), Positives = 250/494 (50%), Gaps = 65/494 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY----------------------GRMALFT---- 35
G+ +H V K D D+YV SLI Y AL T
Sbjct: 83 GQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYAS 142
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
A+ LFD++P +DV SWN ++S Y + E L LF++++ + D+ T V +
Sbjct: 143 RGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTV 202
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA + G+ VH + G + L + NAL+ +Y+KC E++ A LF +
Sbjct: 203 LSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSY--- 259
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
KD++ W +++ G +EAL LF++M+
Sbjct: 260 -----------------------------KDVISWNTLIGGYTHMNLYKEALLLFQEMLR 290
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ--NNITQDAFVKTALIDMYSKCGSL 268
G TP++ M+SVL AC+ L + GR +H +I + +T + ++T+LIDMY+KCG +
Sbjct: 291 SGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDI 350
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E A F K + +W MI G A +G + + +F +M + GI+P++ TFV +L+AC
Sbjct: 351 EAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSAC 410
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
HSG++ G +FR M Y++ P +EH+ C++DLL +GL +AEE I M E +
Sbjct: 411 SHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVI 470
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+ +LL AC + +L + A N++K+ ++ +Y+LLSN YA G W +VA R +
Sbjct: 471 WCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNG 530
Query: 449 LQTRKKPGNSIIDL 462
+K PG S I++
Sbjct: 531 KCMKKVPGCSSIEV 544
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 116/369 (31%), Positives = 191/369 (51%), Gaps = 9/369 (2%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WNT++ + SD L L+ ++ G++ + T L +CA+ + G+ +H
Sbjct: 32 WNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVL 91
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K+G + L + +L+ MY + +++A ++FD S R++VS LI GY + A+
Sbjct: 92 KLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDR-SSHRDVVSYTALITGYASRGDIRSAQ 150
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
++FDEI KD+V W +M+ G + +EALELF++M+ V PDE V+VLSAC+
Sbjct: 151 KLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSG 210
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
+++ GR VH ++ + + + ALID+YSKCG +E A F KDV++W T+I
Sbjct: 211 SIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIG 270
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF----RRMGGV 347
G + L EAL +F +M R G PN+ T +SVL AC H G I G + +R+ GV
Sbjct: 271 GYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGV 330
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
L+D+ ++ G + A + M S+ A++ + D
Sbjct: 331 TNASSL---RTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAMIFGFAMHGRADASFD 386
Query: 408 VANNMMKLG 416
+ + M K+G
Sbjct: 387 LFSRMRKIG 395
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 148/334 (44%), Gaps = 67/334 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ V DS++ + N+LI Y + A LF + ++DV SWNTL+ Y
Sbjct: 214 LGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYT 273
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYM 118
+ E L+LF++++ G + +T++ + ACA L + G+ +H Y K G+
Sbjct: 274 HMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNA 333
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ +L+ MYAKC +++ A +VF+ ++
Sbjct: 334 SSLRTSLIDMYAKCGDIEAA--------------------------------HQVFNSML 361
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K + W +M+ G + + + +LF +M G+ PD+ V +LSACS L GR
Sbjct: 362 HKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRH 421
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+ R ++TQD Y LE + MI+ L + GL
Sbjct: 422 IFR-----SMTQD----------YKMTPKLEH---------------YGCMIDLLGHSGL 451
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
EA + ME ++P+ + S+L AC+ G
Sbjct: 452 FKEAEEMINTME---MEPDGVIWCSLLKACKMHG 482
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 152/333 (45%), Gaps = 46/333 (13%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A VF+ I + + ++W +M+ G + P +L L+ M+ G+ P+ +L +C+
Sbjct: 17 ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT-- 287
G+ +H +L+ D +V T+LI MY + LE+A F ++ +DVV++T
Sbjct: 77 SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136
Query: 288 -----------------------------TMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
MI G A G EAL +F +M + ++P+E
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
+T+V+VL+AC HSG I G Q+ + + ++ L+DL S+ G + A +
Sbjct: 197 STYVTVLSACAHSGSIELGRQVHSWVDD-HGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255
Query: 379 IMPAEDKFISYKALLSACITYSEFDLGKK---VANNMMKLGNQSHEAYVL-----LSNFY 430
+ +D IS+ L+ Y+ +L K+ + M++ G ++ +L ++
Sbjct: 256 GLSYKD-VISWNTLIGG---YTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLG 311
Query: 431 ALE-GHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A++ G W V +R +K + S+ID+
Sbjct: 312 AIDIGRWIHVYIDKR-LKGVTNASSLRTSLIDM 343
>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
Length = 608
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/461 (32%), Positives = 248/461 (53%), Gaps = 3/461 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +HA + K L L+ Y R L DAR FD P RD+ ++ L++ +
Sbjct: 21 RRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHS 80
Query: 63 SDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
SD VL L ++++ + + D L L SA RL L G+ +H + +
Sbjct: 81 SDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVV 140
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+++L+ MY KC +A ++FD +G + ++V LI+GY A ++F +
Sbjct: 141 KSSLIDMYCKCGVPQDARKVFDSIGVKNSVV-WTALISGYASNGCTGEALDLFQSMPAHG 199
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ W +++ G VKA A+ LF +M + + D V+ +V+ + L+ L GR +H
Sbjct: 200 LFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLH 259
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
F+++ V AL+DMYSKC + A F +DV++WTT++ G A +G
Sbjct: 260 GFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAE 319
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
E ++ +M G+KPNE TFV ++ AC H+GL+ +G QLF M Y ++P ++H+ C
Sbjct: 320 EVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCY 379
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLLSR+G L +AE+ I MP E ++ ALLSAC +++ + +VA+N+++L +
Sbjct: 380 LDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPKDP 439
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
Y+LLSN YA+ W VA+ R+ M E++ RK PG S ++
Sbjct: 440 STYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVE 480
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 136/340 (40%), Gaps = 68/340 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LHAH + +D V +SLI Y + + DAR +FD + ++ W L+S Y
Sbjct: 121 LGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYA 180
Query: 61 DFSDSGEVLILFKQLIFEGI--------------------------------VADKITLV 88
+GE L LF+ + G+ + D L
Sbjct: 181 SNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLA 240
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ A L L G+ +H + ++G + + NAL+ MY+KC ++
Sbjct: 241 TVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHS----------- 289
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
AREVF+ I +D++ W +++ G + + EE L+ +M
Sbjct: 290 ---------------------AREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRM 328
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGS 267
+ G+ P+E V ++ ACS +Q GR L + + T +D+ S+ G
Sbjct: 329 LLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGY 388
Query: 268 LEEA--LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
L EA L+T + D TW ++ + LRV
Sbjct: 389 LSEAEKLITTMPYE-PDEATWGALLSACKKHNDTQMCLRV 427
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 251/466 (53%), Gaps = 8/466 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG--RMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K HA V K+ L + +V + L++F R + A LF + + +NT++
Sbjct: 22 KQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALL 81
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + +F + GI D TL + A AR+ +H G+++H K+G
Sbjct: 82 LRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEF 141
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+LL+MY M A ++FDEM + VS ++I GY +M VD ARE+FD K
Sbjct: 142 VGNSLLVMYRSFDNMRSARQVFDEM-PELSAVSWTVMIYGYANMGDVDTARELFDMATVK 200
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D +W +M+ G V+ +E L +F+ M V PDE ++V++LSAC+ + L G +H
Sbjct: 201 DTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIH 260
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
R++ + + V T LIDMY+KCG L+ A F + +D V W MI G+A G G
Sbjct: 261 RYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGE 320
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+++F +ME+ GIKP+ TF++V AC +SG++ EG +++ RM V++++P EH+ C+
Sbjct: 321 GAIKLFMEMEKAGIKPDNITFIAVWXACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCV 380
Query: 361 VDLLSRAGLLYQAEEFIKIMP----AEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+DLLSR G +AE I+ +P ++ ++++A LSAC + + + A + +L
Sbjct: 381 IDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLE 440
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
S AYVLLSN YA G + R MK K PG S I +
Sbjct: 441 RHS-GAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKV 485
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 138/351 (39%), Gaps = 72/351 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--------------- 45
+G+ +HA K + +VGNSL+ Y AR +FD+MP
Sbjct: 123 LGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYA 182
Query: 46 ----------------FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
+D G W ++S Y + E L +F+ + + D+ +V
Sbjct: 183 NMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVT 242
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA + L G +H Y ++GL L + L+ MYAKC +D A LF+EM R
Sbjct: 243 ILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRD 302
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N V W +M+ G E A++LF +M
Sbjct: 303 N--------------------------------VCWNAMISGMAMDGDGEGAIKLFMEME 330
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
G+ PD ++V ACS+ + G R+ +R + I + +ID+ S+ G
Sbjct: 331 KAGIKPDNITFIAVWXACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRF 390
Query: 269 EEALVTFYK-----TDCKDVVTWTTMIEGLANYGLGNE---ALRVFYQMER 311
EEA + + ++ V W + +G + A +Q+ER
Sbjct: 391 EEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLER 441
>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
Length = 626
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 258/466 (55%), Gaps = 20/466 (4%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFY------GRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
+H + + S+++V N+L+ Y GR+A AR +FD+M RDV SWN+++ +
Sbjct: 127 VHGQIVRWGFGSEVFVQNTLLDVYYRCGGPGRVAA---ARQVFDEMVDRDVVSWNSIIGV 183
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEY 117
Y D + LF+ + +V+ TLV F AR+ + +TV ++ + +
Sbjct: 184 YMSSGDYTGAMELFEAMPERNVVSWN-TLVAGF---ARVGDMVTAQTVFDRMPSRNAISW 239
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
N ++ YA +++ A +FD M ++++VS +++ Y + +D A+E+FD +
Sbjct: 240 -----NLMISGYASSGDVEAARSMFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHM 294
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYG 236
K++V W +M+ G + EAL F+ M+ EG PDE +VSV+SAC+ L +++Y
Sbjct: 295 PLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYC 354
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+ FI ++N+ + ALIDM++KCG + A FY+ + ++TWTTMI G A
Sbjct: 355 NWISSFIRKSNVHLTIALGNALIDMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGFAFN 414
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
GL EAL V+ M R+G++ ++ F++ LAAC H GL+ EG +F M Y +QP +EH
Sbjct: 415 GLCREALLVYNNMCREGVELDDMVFIAALAACVHGGLLQEGWSIFNEMVEQYNIQPRMEH 474
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL RAG L +A FI+ MP E + + LLS+C+ + + V+ + +L
Sbjct: 475 YGCVVDLLGRAGNLQEAVLFIESMPLEPSVVIWATLLSSCVAHGNAEFIDYVSKKITELE 534
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ VL+SN ALEG W V AR M+ K PG+S I +
Sbjct: 535 PFNSSYQVLVSNSSALEGRWDGVIGARTIMRNWGIEKVPGSSSIQV 580
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 12/218 (5%)
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
P +AL + M+ GV P+ +L AC+ L + R VH I++ + FV+
Sbjct: 86 PADALAAYTAMLAAGVPPNGFTFTFLLRACALLGFPRPCRCVHGQIVRWGFGSEVFVQNT 145
Query: 258 LIDMYSKCGS---LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
L+D+Y +CG + A F + +DVV+W ++I + G A+ +F M +
Sbjct: 146 LLDVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMPER-- 203
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
N ++ +++A G + +F RM + + ++ + +G + A
Sbjct: 204 --NVVSWNTLVAGFARVGDMVTAQTVFDRMPSRNAISWNL-----MISGYASSGDVEAAR 256
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
M + +S+ A++SA + D K++ ++M
Sbjct: 257 SMFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHM 294
>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
Length = 939
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 156/462 (33%), Positives = 246/462 (53%), Gaps = 35/462 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRM-ALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +HA+ K LDSD+ + N+L+ Y + ++ ARV FD+M +D SW T+++ Y
Sbjct: 384 GREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARV-FDRMRIKDHVSWTTIIACYA 442
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E + F+ EGI D + + + AC+ L+ + K VH YA + GL ++
Sbjct: 443 QSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLI- 501
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++N ++ +Y +C E+ AL +F E+ D+ K
Sbjct: 502 LKNRIIDIYGECGEVCYALNIF-----------------------------EMLDK---K 529
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
DIV W SM++ + EA+ LF KM++ G+ PD +V +L A + LS+L G+ +H
Sbjct: 530 DIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIH 589
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
F+++ + V ++L+DMYS CGS+ AL F + CKDVV WT MI +G G
Sbjct: 590 GFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGK 649
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+A+ +F +M G+ P+ +F+++L AC HS L+ EG M Y++QP EH+ C+
Sbjct: 650 QAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACV 709
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL R+G +A +FIK MP E K + + ALL AC + +L + +++L +
Sbjct: 710 VDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNP 769
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVL+SN +A G W V E R M E RK P S I++
Sbjct: 770 GNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEI 811
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 162/333 (48%), Gaps = 36/333 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM-PFRDVGSWNTLMSIYN 60
G +H K+ LD V N+L+ Y + L A +F+ M RDV SWN+ +S
Sbjct: 182 GSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCV 241
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF+++ +G + T V + CA L +L++G+ +H K G E+ +
Sbjct: 242 QNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQ 301
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
NALL+MYA+C +D ALR+F E+G DK
Sbjct: 302 C-NALLVMYARCGWVDSALRVFREIG--------------------------------DK 328
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D + W SM+ V+ + EA++ F +M+ G PD +VS+LSA L L GR VH
Sbjct: 329 DYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVH 388
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ ++ + D + L+DMY KC S+E + F + KD V+WTT+I A +
Sbjct: 389 AYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYS 448
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
EA+ F +++GIK + S+L AC SGL
Sbjct: 449 EAIGKFRTAQKEGIKVDPMMMGSILEAC--SGL 479
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 157/344 (45%), Gaps = 41/344 (11%)
Query: 2 GKGLHAHVTKTAL---DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
G+ LHAH T D ++ L+ YG+ DA LFD MP R V SWN L+
Sbjct: 74 GRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGA 133
Query: 59 YNDFSDSGEVLILFKQL----IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG 114
+GE + +++ + G D TL + AC G VH A K G
Sbjct: 134 CLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSG 193
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF 174
L+ + NAL+ MYAKC L+D A VF
Sbjct: 194 LDRSTLVANALVGMYAKCG--------------------------------LLDSALRVF 221
Query: 175 DEIVD-KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
+ + D +D+ W S + GCV+ EAL+LF++M +G + + V VL C+ L+ L
Sbjct: 222 EWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQL 281
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
+GR +H +L+ T+ AL+ MY++CG ++ AL F + KD ++W +M+
Sbjct: 282 NHGRELHAALLKCG-TEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCY 340
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
L EA+ F +M + G P+ A VS+L+A H G + G
Sbjct: 341 VQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLING 384
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/369 (29%), Positives = 176/369 (47%), Gaps = 39/369 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHA + K + +I N+L+ Y R A +F ++ +D SWN+++S Y
Sbjct: 284 GRELHAALLKCGTEFNIQC-NALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQ 342
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + F +++ G D +V L SA L +L G+ VH YA K L+ L +
Sbjct: 343 NRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQI 402
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N L+ MY KC ++ + R+FD M KD
Sbjct: 403 ANTLMDMYIKCYSVECSARVFDRMRI--------------------------------KD 430
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +++ ++ + EA+ F+ EG+ D +M S+L ACS L ++ + VH
Sbjct: 431 HVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHS 490
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ ++N + D +K +ID+Y +CG + AL F D KD+VTWT+M+ A GL +E
Sbjct: 491 YAIRNGLL-DLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHE 549
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--C 359
A+ +F +M GI+P+ V +L A +T+G ++ G + R + +E V
Sbjct: 550 AVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIH---GFLIRGKFPVEGAVVSS 606
Query: 360 LVDLLSRAG 368
LVD+ S G
Sbjct: 607 LVDMYSGCG 615
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 134/306 (43%), Gaps = 55/306 (17%)
Query: 103 GKTVHCYATKVGLEYMLNMENA------LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
G+ +H +A G L ++A LL MY KC + +A RLFD M
Sbjct: 74 GRQLHAHAVATG---ALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMP---------- 120
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE----G 212
AR VF W +++ C+ + EA+ +++ M G
Sbjct: 121 -------------ARTVFS---------WNALIGACLSSGGAGEAVGVYRAMRASEPVAG 158
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
PD + SVL AC + + + G VH +++ + + V AL+ MY+KCG L+ AL
Sbjct: 159 AAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSAL 218
Query: 273 VTF-YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
F + D +DV +W + I G G+ EAL +F +M+ G N T V VL C
Sbjct: 219 RVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAEL 278
Query: 332 GLITEGCQL---FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
+ G +L + G + +Q L+ + +R G + A + + +D +IS
Sbjct: 279 AQLNHGRELHAALLKCGTEFNIQCNA-----LLVMYARCGWVDSALRVFREIGDKD-YIS 332
Query: 389 YKALLS 394
+ ++LS
Sbjct: 333 WNSMLS 338
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 12/176 (6%)
Query: 236 GRLVHRFILQNNITQD---AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
GR +H + D F+ T L+ MY KCG L +A F + V +W +I
Sbjct: 74 GRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGA 133
Query: 293 LANYGLGNEALRVFYQMERK----GIKPNEATFVSVLAACRHSGLITEGCQL--FRRMGG 346
+ G EA+ V+ M G P+ T SVL AC G G ++ G
Sbjct: 134 CLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSG 193
Query: 347 VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
+ R LV + ++ GLL A + M S+ + +S C+ F
Sbjct: 194 LDRSTLVAN---ALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMF 246
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 154/495 (31%), Positives = 256/495 (51%), Gaps = 63/495 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
+G +H HV K S ++VG+ L+ Y + L AR FD+MP ++V +NTL++
Sbjct: 160 LGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLM 219
Query: 58 ----------IYND---------------FSDSG---EVLILFKQLIFEGIVADKITLVI 89
++ D F+ +G E + LF+++ E + D+ T
Sbjct: 220 RCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGS 279
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +AC + L GK VH Y + + + + +AL+ MY KCK + A +F +M
Sbjct: 280 VLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNC-- 337
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
K++V W +M+ G + EEA+++F M
Sbjct: 338 ------------------------------KNVVSWTAMLVGYGQNGYSEEAVKIFCDMQ 367
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+ G+ PD+ + SV+S+C++L++L+ G H L + + V AL+ +Y KCGS+E
Sbjct: 368 NNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIE 427
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
++ F + D V+WT ++ G A +G NE LR+F M G KP++ TF+ VL+AC
Sbjct: 428 DSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACS 487
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
+GL+ +G Q+F M +R+ P +H+ C++DL SRAG L +A +FI MP I +
Sbjct: 488 RAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGW 547
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449
+LLS+C + ++GK A +++KL + +Y+LLS+ YA +G W EVA R+ M++
Sbjct: 548 ASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDK 607
Query: 450 QTRKKPGNSIIDLKH 464
RK+PG S I K+
Sbjct: 608 GLRKEPGCSWIKYKN 622
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 130/445 (29%), Positives = 227/445 (51%), Gaps = 42/445 (9%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H H+ K + +I++ N+L+ Y + T AR +FD+MP R++ SWNTL+S Y+
Sbjct: 29 KKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKL 88
Query: 63 SDSGEVLILFKQLIFEGIVA--------------------------------DKITLVIL 90
+ E+ +F + +V+ ++I L +
Sbjct: 89 ACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTM 148
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
++ +H G VH + K G + + + + L+ MY+K + A + FDEM +N
Sbjct: 149 LILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEM-PEKN 207
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+V N LI G + ++ +R++F ++ +KD + W +M+ G + EA++LF++M
Sbjct: 208 VVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRL 267
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
E + D+ SVL+AC + LQ G+ VH +I++ + + FV +AL+DMY KC S++
Sbjct: 268 ENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKS 327
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F K +CK+VV+WT M+ G G EA+++F M+ GI+P++ T SV+++C +
Sbjct: 328 AETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCAN 387
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+ EG Q R V + I LV L + G + + M D+ +S+
Sbjct: 388 LASLEEGAQFHCR-ALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDE-VSWT 445
Query: 391 ALLSACITYSEFDLGKKVANNMMKL 415
AL+S Y++F GK AN ++L
Sbjct: 446 ALVSG---YAQF--GK--ANETLRL 463
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 143/334 (42%), Gaps = 39/334 (11%)
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
C L+ K +HC+ K + + N L+ YAK + A R+FD+M +RN+ S
Sbjct: 19 CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQM-PQRNLYS 77
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
N L++ Y + + VF + +D+V W S++ ++++ + M+ G
Sbjct: 78 WNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGP 137
Query: 214 TPDEEVMVS-VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK-------- 264
+ +S +L S + G VH +++ FV + L+DMYSK
Sbjct: 138 FNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCAR 197
Query: 265 -----------------------CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
C +E++ FY KD ++WT MI G GL E
Sbjct: 198 QAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDRE 257
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--C 359
A+ +F +M + ++ ++ TF SVL AC + EG Q+ + R FV
Sbjct: 258 AIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVH---AYIIRTDYQDNIFVGSA 314
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
LVD+ + + AE + M ++ +S+ A+L
Sbjct: 315 LVDMYCKCKSIKSAETVFRKMNCKN-VVSWTAML 347
>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/462 (31%), Positives = 242/462 (52%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH K L +I V N+++ YG+ +A +FD M RD SWN +++ +
Sbjct: 359 GIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQ 418
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + L LF ++ + D T + ACA + L+YG +H K G+ +
Sbjct: 419 NEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFV 478
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+AL+ MY KC + EA ++ D + +K
Sbjct: 479 GSALVDMYGKCGMLMEA--------------------------------EKIHDRLEEKT 506
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W S++ G KQ E A F +M++ GV PD +VL C++++ ++ G+ +H
Sbjct: 507 TVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHA 566
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
IL+ N+ D ++ + L+DMYSKCG+++++ + F KT +D VTW+ MI A +G G +
Sbjct: 567 QILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQ 626
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+++F +M+ +KPN F+SVL AC H G + +G F+ M Y + P +EH+ C+V
Sbjct: 627 AIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMV 686
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R+ + +A + I+ M E + ++ LLS C ++ +K N++++L Q
Sbjct: 687 DLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSS 746
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AYVLL+N YA G W EVA+ R MK + +K+PG S I+++
Sbjct: 747 AYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVR 788
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 184/395 (46%), Gaps = 34/395 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH H K+ D +G + + Y + +DA +F+ +P S+N ++ Y
Sbjct: 257 LGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYA 316
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L +F+ L + D+I+L +AC+ ++ G +H A K GL + +
Sbjct: 317 RQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNIC 376
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N +L MY KC + EA +FD+M RR+ VS N +I A E +EIV
Sbjct: 377 VANTILDMYGKCGALVEACTIFDDM-ERRDAVSWNAII----------AAHEQNEEIV-- 423
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ L LF M+ + PD+ SV+ AC+ L YG +H
Sbjct: 424 -------------------KTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIH 464
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I+++ + D FV +AL+DMY KCG L EA + + K V+W ++I G ++
Sbjct: 465 GRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSE 524
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A R F QM G+ P+ T+ +VL C + I G Q+ ++ + + + L
Sbjct: 525 NAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKL-NLHSDVYIASTL 583
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
VD+ S+ G + + + P D ++++ A++ A
Sbjct: 584 VDMYSKCGNMQDSRLMFEKTPKRD-YVTWSAMICA 617
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/429 (25%), Positives = 185/429 (43%), Gaps = 73/429 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK HA + T+ IYV N L+ FY + + A +FD+MP RDV SWNT++ Y +
Sbjct: 25 GKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRMPHRDVISWNTMIFGYAE 84
Query: 62 FSDSGEVLILFKQLIFEGIVA-------------------------------DKITLVIL 90
+ G LF + +V+ D T ++
Sbjct: 85 IGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVV 144
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
AC+ +E G VHC A ++G E + +AL+ MY+KCK+
Sbjct: 145 LKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKK---------------- 188
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+D A +F E+ ++++V W +++ G V+ + E L+LFK M+
Sbjct: 189 ----------------LDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLK 232
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G+ + SV +C+ LS + G +H L+++ D+ + TA +DMY+KC + +
Sbjct: 233 VGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSD 292
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F ++ +I G A G +AL +F ++R + +E + L AC
Sbjct: 293 AWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSV 352
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRAGLLYQAEEFIKIMPAEDKF 386
EG QL V+ + +C ++D+ + G L +A M D
Sbjct: 353 IKGHLEGIQLHG-----LAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDA- 406
Query: 387 ISYKALLSA 395
+S+ A+++A
Sbjct: 407 VSWNAIIAA 415
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 101/419 (24%), Positives = 189/419 (45%), Gaps = 40/419 (9%)
Query: 2 GKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
G GL H + ++D+ G++L+ Y + A +F +MP R++ W+ +++ Y
Sbjct: 155 GLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGY 214
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L LFK ++ G+ + T +F +CA L G +H +A K Y
Sbjct: 215 VQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDS 274
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ A L MYAKC M +A ++F+ + + S N +I GY
Sbjct: 275 IIGTATLDMYAKCDRMSDAWKVFNTLPNPPR-QSYNAIIVGY------------------ 315
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+ Q +ALE+F+ + ++ DE + L+ACS + G +
Sbjct: 316 -------------ARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQL 362
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ + + V ++DMY KCG+L EA F + +D V+W +I
Sbjct: 363 HGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEI 422
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV- 358
+ L +F M R ++P++ T+ SV+ AC + G ++ R + + ++ FV
Sbjct: 423 VKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGR---IVKSGMGLDWFVG 479
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
LVD+ + G+L +AE+ I E +S+ +++S + + + ++ + M+++G
Sbjct: 480 SALVDMYGKCGMLMEAEK-IHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMG 537
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 124/257 (48%), Gaps = 1/257 (0%)
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
K T + C+ L+ L+ GK H + + N L+ Y K M+ A ++FD
Sbjct: 6 KFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFD 65
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
M R+++S N +I GY ++ + A+ +FD + ++D+V W S++ + +++E
Sbjct: 66 RM-PHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIE 124
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
+F +M + D VL ACS + + G VH +Q D +AL+DMYS
Sbjct: 125 IFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYS 184
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KC L+ A F + +++V W+ +I G E L++F M + G+ +++T+ S
Sbjct: 185 KCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYAS 244
Query: 324 VLAACRHSGLITEGCQL 340
V +C G QL
Sbjct: 245 VFRSCAGLSAFKLGTQL 261
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 104/224 (46%), Gaps = 29/224 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA + K L SD+Y+ ++L+ Y + D+R++F+K P RD +W+ ++ Y
Sbjct: 560 LGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYA 619
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLE 116
+ + LF+++ + + + + ACA + + LHY + + + GL+
Sbjct: 620 YHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQ---SHYGLD 676
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + ++ + + +++EAL+L + M + V L++ V++A + F+
Sbjct: 677 PHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNS 736
Query: 177 IVDKD----------------IVLW------RSMMHGCVKAKQP 198
++ D + +W RS+M C K+P
Sbjct: 737 LLQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEP 780
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 163/494 (32%), Positives = 249/494 (50%), Gaps = 65/494 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY---GRM-------------------ALFT---- 35
GK LHAH K AL + +V S+IH Y G M AL T
Sbjct: 150 GKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVS 209
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
DAR LFD++P +DV SWN ++S Y E ++ F ++ ++ +K T+V++
Sbjct: 210 QGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVV 269
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SAC GK + + G L + NAL+ MY KC E
Sbjct: 270 LSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGE---------------- 313
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
D+ARE+FD I +KD++ W +M+ G EEAL LF+ M+
Sbjct: 314 ----------------TDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLR 357
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLE 269
V P++ + +L AC+ L L G+ VH +I +N + +A + T+LIDMY+KCG +E
Sbjct: 358 SNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIE 417
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNEATFVSVLAAC 328
A F +++ +W M+ G A +G AL +F +M KG+ +P++ TFV VL+AC
Sbjct: 418 AAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSAC 477
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
+GL+ G Q FR M Y + P ++H+ C++DLL+RA +AE +K M E
Sbjct: 478 TQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAI 537
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+ +LLSAC + + G+ VA + +L ++ A+VLLSN YA G W +VA R + +
Sbjct: 538 WGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLND 597
Query: 449 LQTRKKPGNSIIDL 462
+K PG + I++
Sbjct: 598 KGMKKVPGCTSIEI 611
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 128/398 (32%), Positives = 210/398 (52%), Gaps = 7/398 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF--YGRMALFTDARVLFD---KMPFRDVGSWNTLMS 57
K +H+ + KT L++ ++V + LIHF + A LF+ + +V WN+L+
Sbjct: 45 KQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIR 104
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
Y+ S L LF ++++ G+ + T LF +C + + H GK +H +A K+ L +
Sbjct: 105 GYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHF 164
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
++ +++ MYA EMD A +FD+ S R+ VS LI GY+ +D AR +FDEI
Sbjct: 165 NPHVHTSVIHMYASVGEMDFARLVFDK-SSLRDAVSFTALITGYVSQGCLDDARRLFDEI 223
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
KD+V W +M+ G V++ + EEA+ F +M + V P++ MV VLSAC + + G+
Sbjct: 224 PVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGK 283
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+ ++ N + + ALIDMY KCG + A F + KDV++W TMI G +
Sbjct: 284 WIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLS 343
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
L EAL +F M R +KPN+ TF+ +L AC G + G + + R +
Sbjct: 344 LYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLW 403
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
L+D+ ++ G + AE + M + + S+ A+LS
Sbjct: 404 TSLIDMYAKCGCIEAAERVFRSMHSRN-LASWNAMLSG 440
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 149/333 (44%), Gaps = 51/333 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK + + V S++ + N+LI Y + AR LFD + +DV SWNT++ Y+
Sbjct: 281 LGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYS 340
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E L LF+ ++ + + +T + + ACA L L GK VH Y K + N
Sbjct: 341 YLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDK----NLRN 396
Query: 121 MENA-----LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
NA L+ MYAKC ++ A R+F M S RN+ S N +++G+
Sbjct: 397 SSNASLWTSLIDMYAKCGCIEAAERVFRSMHS-RNLASWNAMLSGF-------------- 441
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSNLQ 234
MHG E AL LF +M+++G+ PD+ V VLSAC+ +
Sbjct: 442 ------------AMHG-----HAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVD 484
Query: 235 YGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEG 292
G R ++Q+ I+ +ID+ ++ EEA + + + D W +++
Sbjct: 485 LGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSA 544
Query: 293 LANYG---LGNEALRVFYQMERKGIKPNEATFV 322
+G G +Q+E + N FV
Sbjct: 545 CKAHGRVEFGEYVAERLFQLEPE----NAGAFV 573
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 142/395 (35%), Positives = 228/395 (57%), Gaps = 5/395 (1%)
Query: 72 FKQLIFEGIVADKITLVILFSACARLEKLH--YGKTVHCYATKVGLEYMLNM-ENALLLM 128
F + F G+ + IT + L S C G +H YA K+GL+ M A+L M
Sbjct: 6 FSDMRFAGVEPNHITFIALLSGCGDFPSGSEALGDLLHGYACKLGLDRTHVMVGTAILGM 65
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
Y+K +A +FD M +N V+ N +I+GY+ V+ A ++FDE++++D++ W +M
Sbjct: 66 YSKRGRFRKARLIFDYM-EDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAM 124
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
++G VK EEAL F++M GV PD +++ L+AC++L L +G +HR+++ +
Sbjct: 125 VNGFVKKGFHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDF 184
Query: 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
+ V +LID+Y +CG +E A F K + + VV+W ++I G A G +E+L F +
Sbjct: 185 KNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRK 244
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
M+ +G KP+ TF L AC H GL+ EG + F+ M YR+ P IEH+ C+VDL SRAG
Sbjct: 245 MQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAG 304
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD-LGKKVANNMMKLGNQSHEAYVLLS 427
L A + ++ MP + + +LL+AC + L +++ ++ L +SH YV+LS
Sbjct: 305 RLEDALKVVQSMPMKPNEVVIGSLLAACKNHGNNTLLAERLMKHLSDLNVKSHSNYVILS 364
Query: 428 NFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
N YA +G W ++ RR MK L +K+PG S I++
Sbjct: 365 NMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEI 399
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 143/365 (39%), Gaps = 99/365 (27%)
Query: 1 MGKGLHAHVTKTALD-SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+G LH + K LD + + VG +++ Y + F AR++FD M ++ +WNT++ Y
Sbjct: 38 LGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFRKARLIFDYMEDKNSVTWNTMIDGY 97
Query: 60 ----------------------------NDFSDSG---EVLILFKQLIFEGIVADKITLV 88
N F G E L F+++ G+ D + ++
Sbjct: 98 MRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEALSWFREMQISGVKPDYVAII 157
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+AC L L +G +H Y + + + N+L+ +Y +C ++ A ++FD+M +
Sbjct: 158 AALAACTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKM-EK 216
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
R +VS W S++ G E+L F+KM
Sbjct: 217 RTVVS-------------------------------WNSVIVGFAANGNAHESLFYFRKM 245
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
+EG PD L+ACS + ++ G R I+ ++D+YS+ G
Sbjct: 246 QEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAGR 305
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
LE +AL+V M +KPNE S+LAA
Sbjct: 306 LE-------------------------------DALKVVQSMP---MKPNEVVIGSLLAA 331
Query: 328 CRHSG 332
C++ G
Sbjct: 332 CKNHG 336
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 246/465 (52%), Gaps = 35/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
M + H V K LD+D + NS++ Y R AR +FD++ +D+ SWN+L+S Y
Sbjct: 135 MARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYA 194
Query: 61 DFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ E + +F +L E G D+++LV + AC L L G+ V + + G++
Sbjct: 195 KLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNS 254
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ +AL+ MY+KC E+ + SRR +FD +
Sbjct: 255 YIGSALISMYSKCGEL---------VSSRR-----------------------IFDGMPS 282
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D + W + + + +EA+ LF M + GV P++ + +VLSAC+S+ L G+ +
Sbjct: 283 RDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQM 342
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
+ + D FV TALIDMY+KCGSLE A F K+ +W MI LA++G
Sbjct: 343 DEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKA 402
Query: 300 NEALRVFYQMERKG--IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F +M +G +PN+ TFVS+L+AC H+GL+ EG +LF M ++ + P IEH+
Sbjct: 403 KEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHY 462
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLLSRAG LY+A + I+ MP + ++ AL SAC D+G++V +++L
Sbjct: 463 SCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDP 522
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ Y++ S Y W + A R M+E K PG S I++
Sbjct: 523 SNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEV 567
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 189/375 (50%), Gaps = 45/375 (12%)
Query: 34 FTDARVLFDKM-PFRDVGSWNTLM-SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILF 91
FT + ++F + P + ++N ++ + + D L L+ Q+ I + T +F
Sbjct: 65 FTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVF 124
Query: 92 SACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNI 151
ACA LE++ + HC K+GL+ + N+++ MY +C E
Sbjct: 125 LACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGE----------------- 167
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
NG +AR+VFDEI +KD+V W S++ G K EA+E+F ++ +E
Sbjct: 168 -------NG--------VARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREE 212
Query: 212 -GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
G PDE +VSVL AC L +L+ GR V F+++ + ++++ +ALI MYSKCG L
Sbjct: 213 SGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVS 272
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
+ F +D +TW I A G+ +EA+ +F+ M+ G+ PN+ T +VL+AC
Sbjct: 273 SRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACAS 332
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEH--FV--CLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
G + G Q+ Y ++H FV L+D+ ++ G L A+ MP ++
Sbjct: 333 IGALDLGKQMDE-----YATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKND- 386
Query: 387 ISYKALLSACITYSE 401
S+ A++SA ++ +
Sbjct: 387 ASWNAMISALASHGK 401
>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
Length = 639
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 158/468 (33%), Positives = 240/468 (51%), Gaps = 43/468 (9%)
Query: 2 GKGLHAHV-TKTALDSD----IYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM 56
G+ +H HV L D ++V NSL Y + L DA +FD MP R+V +W T++
Sbjct: 83 GRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVV 142
Query: 57 S-IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
+ + + E L + +G+ + T + AC L VH K GL
Sbjct: 143 AALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTPGML---TAVHASTVKAGL 199
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ ++ + LI+ Y+ + +D R VFD
Sbjct: 200 DS--------------------------------DVFVRSSLIDAYVKLGDLDGGRRVFD 227
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
E+V +D+V+W S++ G ++ A+ELF +M D G + ++ + SVL AC+ + L+
Sbjct: 228 EMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEA 287
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
GR VH +L+ + +D + AL+DMY KCGSLE+A F++ +DV++W+TM+ GLA
Sbjct: 288 GRQVHAHVLKYD--RDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQ 345
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
G EALRVF M+ +G+ PN T V VL AC H+GL+ +G FR M ++ +QP E
Sbjct: 346 NGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPERE 405
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
H C+VDLL RAG L +A EFI M E + ++ LL AC + L A ++KL
Sbjct: 406 HHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKL 465
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A VLLSN YA WT+ + + M++ RK+PG S I+L+
Sbjct: 466 EPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELE 513
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 22/162 (13%)
Query: 196 KQPEEALELFKKMIDEGVT----------------PDEEVMVSVLSACSSLSNLQYGRLV 239
+P +L F ++ EG D + ++ C +GRL+
Sbjct: 27 PRPHPSLTTFSRLCVEGPLPAALALLSELAAAGLRADPVSLTRLVKLCVRHGTADHGRLI 86
Query: 240 HRFI-----LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
HR + L ++ FV +L MY+K G L++AL F ++VVTWTT++ LA
Sbjct: 87 HRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALA 146
Query: 295 NY-GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335
+ G EALR M R G+ PN TF SVL AC G++T
Sbjct: 147 SADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTPGMLT 188
>gi|242066372|ref|XP_002454475.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
gi|241934306|gb|EES07451.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
Length = 706
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 161/507 (31%), Positives = 265/507 (52%), Gaps = 47/507 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G+ +H ++ D +V SL++ Y + AR L +P RDV SW ++S +
Sbjct: 154 LGRMVHGYLVAGGFCGDPFVVGSLVNMYAKAGDVVSARRLVLGLPCRDVVSWTAIISGCV 213
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N + G L +F ++ +G++ + +T++ + AC+ + VH + LE+
Sbjct: 214 LNGMLEEG--LEVFVMMLEDGVLPNNVTMLSVIQACSLMGASELFSPVHALVVLLELEHD 271
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEM------------------------GSRRNIVSL 154
++ N+L++MYAK ++EA+ LF GS +N V +
Sbjct: 272 ASVVNSLIMMYAKNGFVEEAIWLFRGFYLKSGNVCSNEDVLAAVLYGCTISGSVKNGVGV 331
Query: 155 ----------------NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP 198
N L+ Y E +D A VF+ + KDIV W +++ K+ +
Sbjct: 332 HAHTIKIGAFPSISIENSLMGMYARFEQIDAAHFVFEGMKVKDIVSWNTIISCLAKSDRV 391
Query: 199 EEALELFKKM--IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
EA+ELF + G+ PD ++S+L ACS+ L G+++H +I+++ D +
Sbjct: 392 NEAMELFSVLHAAAGGLAPDFVTVLSILQACSNAGLLHQGQMLHGYIMKSGFVYDVSICN 451
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK- 315
ALI MY+K G ++ A + F + D KD+V+W +MI +G G+ ALRVF+Q++ G
Sbjct: 452 ALITMYAKLGRIDFAEMIFERMDIKDLVSWNSMINAYGMHGDGHLALRVFHQLKDAGTPV 511
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
PN TFVSV++AC HSGLI+EG + F MG + ++P+++H+ C+VDLL R+G +AEE
Sbjct: 512 PNAITFVSVISACSHSGLISEGYKCFESMGRDHSIEPSMDHYACVVDLLGRSGRFAEAEE 571
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
FI+ MP + LL+AC + DL +K A + L +S V LSN YA G
Sbjct: 572 FIRDMPVHPNSSIWGPLLAACQLHGNVDLAEKAAKELSALEPESDIWRVSLSNTYASAGR 631
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDL 462
W + A+ R M+ + RK+ G S +D+
Sbjct: 632 WRDAAKIRTEMRRVGLRKETGWSFVDV 658
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 5/183 (2%)
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
+ + N L++ Y+ L+ A + D +D + S++ + P +AL F M+D
Sbjct: 65 LAATNSLLHAYLQCGLLSRALRLLDGTPRRDAATYASLISAHCRLGAPLDALRAFLDMLD 124
Query: 211 EG-----VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
G V P+E +VL AC + + GR+VH +++ D FV +L++MY+K
Sbjct: 125 WGCSDAAVRPNEFTAAAVLQACGLARDERLGRMVHGYLVAGGFCGDPFVVGSLVNMYAKA 184
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G + A C+DVV+WT +I G G+ E L VF M G+ PN T +SV+
Sbjct: 185 GDVVSARRLVLGLPCRDVVSWTAIISGCVLNGMLEEGLEVFVMMLEDGVLPNNVTMLSVI 244
Query: 326 AAC 328
AC
Sbjct: 245 QAC 247
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 256/462 (55%), Gaps = 7/462 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HA+ + LD ++ L+ ++ A LFD++P V +N + ++
Sbjct: 5 KQIHAYSLRNGLDHTKFLIEKLL----QLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+L+ Q+ +G ++ + LF ACA L ++ G+ +H + K G +
Sbjct: 61 GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAM 120
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
ALL MYAK + A +LFDEM R+I + N LI GY ++ A E+F+++ +++
Sbjct: 121 TALLDMYAKLGMLRSARQLFDEM-PVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNV 179
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W +++ G + + +ALE+F + +E G P+E + SVL ACS L L G+ +
Sbjct: 180 ISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEA 239
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGN 300
+ N ++A+V A+++++++CG++EEA F + K ++ +W TMI GLA +G
Sbjct: 240 YARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCI 299
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL+++ QM + ++P++ TFV +L AC H G++ EG QLF M ++V P +EH+ CL
Sbjct: 300 DALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCL 359
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +A I+ MP + + LL AC + +LG+ A ++ KL +
Sbjct: 360 VDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNP 419
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YV+LSN YAL G W+ VA R+ MK K+ G S I++
Sbjct: 420 GNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEV 461
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 151/347 (43%), Gaps = 70/347 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH+H K+ SD++ +L+ Y ++ + AR LFD+MP RD+ +WN+L++ Y
Sbjct: 101 GQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYAR 160
Query: 62 FSDSGEVLILFKQLIFEGIVA--------------------------------DKITLVI 89
L LF ++ +++ +++++
Sbjct: 161 SGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIAS 220
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ AC++L L GK + YA G + NA+L ++A+C ++EA ++FDE+GS+R
Sbjct: 221 VLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKR 280
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHG-CVKAKQPEEALELFKKM 208
N+ S N +I G +HG C+ +AL+L+ +M
Sbjct: 281 NLCSWNTMIMGL--------------------------AVHGRCI------DALQLYDQM 308
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGS 267
+ + PD+ V +L AC+ + GR L + + L+D+ + G
Sbjct: 309 LIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGE 368
Query: 268 LEEALVTFYKTD-CKDVVTWTTMIEGLANYG---LGNEALRVFYQME 310
L+EA D V W T++ + +G LG A +++E
Sbjct: 369 LQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLE 415
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 5/177 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM-PFRDVGSWNTLMSIY 59
+GK + A+ + YV N+++ + R +A+ +FD++ R++ SWNT++
Sbjct: 233 IGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGL 292
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYM 118
+ L L+ Q++ + D +T V L AC + G+ + +K +
Sbjct: 293 AVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPK 352
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLARE 172
L L+ + + E+ EA L M + V L+ + ++EL ++A E
Sbjct: 353 LEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAE 409
>gi|224116552|ref|XP_002331925.1| predicted protein [Populus trichocarpa]
gi|222874597|gb|EEF11728.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 159/462 (34%), Positives = 254/462 (54%), Gaps = 3/462 (0%)
Query: 3 KGLHAH-VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +HA +T+ L + + L++ Y ++ DA+ +F + D ++ +L+++Y
Sbjct: 20 KQIHAQALTQGLLFIEQPLACKLVNRYAKLGNPRDAQKVFGYIQDPDRVTYTSLINLYLS 79
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ +F +L+ EG+ D ++V SAC + + L GK VH + L +
Sbjct: 80 TQLPIKAFSVFSKLVNEGLRPDSHSVVGALSACGKKQDLLNGKLVHGMIFRFQLGANSIV 139
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY + E+ A +F +MG + ++ S L+NG++ ++ AR VFDE+ ++
Sbjct: 140 GNALIDMYCRNGEIKIAQLVFKQMGIK-DVSSWTSLLNGFVMCNGLESARRVFDEMPWRN 198
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT-PDEEVMVSVLSACSSLSNLQYGRLVH 240
V W +M+ G V+ P LE+F++M EG P V+VLS C+ L +G+ VH
Sbjct: 199 DVAWTAMITGYVRGGMPIRGLEMFRQMKAEGENQPTVITAVAVLSGCADLGAHDHGQAVH 258
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I + N+ + V AL+DMYSK G +E A+ F + KDV +WTTMI +++G GN
Sbjct: 259 GYISKVNLDKGVTVSNALMDMYSKGGCVESAMKIFDRLVKKDVFSWTTMISAHSSHGKGN 318
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL VFY M G+ PN+ TF+ VL+ C HSGL+ E +LF M Y +P IEH+ C+
Sbjct: 319 HALEVFYDMLESGVIPNDVTFLLVLSGCSHSGLLVEANKLFNGMIQCYGFEPKIEHYGCM 378
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A+E I MP + + +++LLSAC+ L + +++L
Sbjct: 379 VDLLCRAGLLEEAKELIDNMPMDPDAVIWRSLLSACMNQRNLGLAEIAGKKIIELEPHDD 438
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN Y + + + R+ M + + KKP S I+L
Sbjct: 439 GVYVLLSNIYHVANRMKDARKMRKMMGDQKVMKKPACSYIEL 480
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 163/392 (41%), Gaps = 86/392 (21%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
GK +H + + L ++ VGN+LI Y R A+++F +M +DV SW +L++ +
Sbjct: 121 GKLVHGMIFRFQLGANSIVGNALIDMYCRNGEIKIAQLVFKQMGIKDVSSWTSLLNGFVM 180
Query: 60 -----------------NDFSDSGEV------------LILFKQLIFEGIVADK-ITLVI 89
ND + + + L +F+Q+ EG IT V
Sbjct: 181 CNGLESARRVFDEMPWRNDVAWTAMITGYVRGGMPIRGLEMFRQMKAEGENQPTVITAVA 240
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ S CA L +G+ VH Y +KV L+ + + NAL+ MY+K ++ A++
Sbjct: 241 VLSGCADLGAHDHGQAVHGYISKVNLDKGVTVSNALMDMYSKGGCVESAMK--------- 291
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+FD +V KD+ W +M+ + ALE+F M+
Sbjct: 292 -----------------------IFDRLVKKDVFSWTTMISAHSSHGKGNHALEVFYDML 328
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT------ALIDMYS 263
+ GV P++ + VLS CS G LV L N + Q + ++D+
Sbjct: 329 ESGVIPNDVTFLLVLSGCS-----HSGLLVEANKLFNGMIQCYGFEPKIEHYGCMVDLLC 383
Query: 264 KCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLA---NYGLGNEALRVFYQMERKGIKPNE 318
+ G LEEA L+ D D V W +++ N GL A + ++E P++
Sbjct: 384 RAGLLEEAKELIDNMPMD-PDAVIWRSLLSACMNQRNLGLAEIAGKKIIELE-----PHD 437
Query: 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
+L+ H + + R+M G +V
Sbjct: 438 DGVYVLLSNIYHVANRMKDARKMRKMMGDQKV 469
>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Vitis vinifera]
Length = 625
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 247/473 (52%), Gaps = 42/473 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + SD V NS++ Y + F ++R +FD+M R+ GSWN L++ Y
Sbjct: 143 GKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAV 202
Query: 62 FSDSG---EVLILFKQLIFEGIVADKITLVILFSAC-ARLEKLHYGKTVHCYATK----V 113
+ E KQ+ + + D T+ L C K YG+ +HCY K +
Sbjct: 203 SGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVL 262
Query: 114 GLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
GL+ +++ L+ MY++ + V + R V
Sbjct: 263 GLDSDVHLGCCLIDMYSRSNK--------------------------------VVVGRRV 290
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSN 232
FD + +++ W +M++G V+ +EAL LF+ M + +G+ P+ +VSVL ACSS S
Sbjct: 291 FDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSG 350
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD-CKDVVTWTTMIE 291
L GR +H F ++ + + + ALIDMYSKCGSL+ A F CKD ++W++MI
Sbjct: 351 LLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMIS 410
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
G +G G EA+ ++ +M + GI+P+ T V +L+AC SGL+ EG ++ + Y ++
Sbjct: 411 GYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIE 470
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
PT+E F C+VD+L RAG L A +FIK MP E + AL+S I + + ++ +
Sbjct: 471 PTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRF 530
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+++L ++ YV +SN YA W VAE RR MK+ + RK PG S I + +
Sbjct: 531 LIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINN 583
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/399 (28%), Positives = 180/399 (45%), Gaps = 42/399 (10%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
H+ + L + + LI Y +R++FD + ++V WN+L++ Y
Sbjct: 46 HSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLY 105
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
E LF Q+ ++ D TL L + L L GK++H + ++G + N++
Sbjct: 106 NEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSI 165
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+ MY KC +E+ ++FDEM + RN S N+LI GY
Sbjct: 166 MSMYCKCGNFEESRKVFDEM-TIRNSGSWNVLIAGY------------------------ 200
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC-SSLSNLQYGRLVHRFIL 244
+ G + EE E K+M + V PD + S+L C YGR +H +I+
Sbjct: 201 --AVSGNCNFR--EETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIV 256
Query: 245 QNNIT----QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+N + D + LIDMYS+ + F + C++V +WT MI G G +
Sbjct: 257 KNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSD 316
Query: 301 EALRVFYQMER-KGIKPNEATFVSVLAACRH-SGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EAL +F M+ GI+PN + VSVL AC SGL++ G Q+ G R + E +
Sbjct: 317 EALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLS-GRQIH---GFAVRKELNNEVSL 372
Query: 359 C--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
C L+D+ S+ G L A + IS+ +++S
Sbjct: 373 CNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISG 411
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 109/241 (45%), Gaps = 8/241 (3%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
+R VFD + K++ LW S+++G K + EA +LF +M V PD+ + ++ S
Sbjct: 77 SRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSE 136
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
L L G+ +H ++ D V +++ MY KCG+ EE+ F + ++ +W +
Sbjct: 137 LGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVL 196
Query: 290 IEGLANYGLGN---EALRVFYQMERKGIKPNEATFVSVLAACR-HSGLITEGCQL---FR 342
I G A G N E QM+ ++P+ T S+L C G G +L
Sbjct: 197 IAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIV 256
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
+ V + + CL+D+ SR+ + M + F S+ A+++ + +
Sbjct: 257 KNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVF-SWTAMINGYVENGDS 315
Query: 403 D 403
D
Sbjct: 316 D 316
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%)
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
+L+ R H IL ++Q++ + T LI Y+ C + + F K+V W ++I
Sbjct: 38 SLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLIN 97
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
G A L NEA ++F QM + P++ T ++ G + G
Sbjct: 98 GYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSG 143
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/394 (37%), Positives = 219/394 (55%), Gaps = 14/394 (3%)
Query: 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130
L+ Q+I +V D + + AC L G+ VH K+GL ++ L+ +Y
Sbjct: 117 LYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYG 176
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
KC ++A R+FDEM R++V+ ++IN Y D + KD V W +M+
Sbjct: 177 KCGAFEDARRVFDEM-PERDVVASTVMINYYFDHGI-------------KDTVCWTAMID 222
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
G V+ + ALE+F+ M E V P+E +V VLSACS L LQ GR V ++ ++ I
Sbjct: 223 GLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIEL 282
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
+ FV ALI+MYS+CG ++EA F + K+V+T+ +MI G A +G EA+ +F +
Sbjct: 283 NHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLI 342
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370
++G P+ TFV VL AC H GL G ++F M Y ++P IEH+ C+VDLL R G L
Sbjct: 343 KQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRL 402
Query: 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430
+A FI++M + ALLSAC + +L ++VA +++ N Y+LLSN Y
Sbjct: 403 EEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAY 462
Query: 431 ALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ G W E AE R NM+E K+PG S I++ +
Sbjct: 463 SSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNN 496
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 127/251 (50%), Gaps = 24/251 (9%)
Query: 163 DMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS 222
++ + A ++F + ++ L+ +++ G V + + + L+ +MI+ + PD + S
Sbjct: 76 NLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTS 135
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF------- 275
VL AC L+ GR VH +L+ ++ + ++ LI++Y KCG+ E+A F
Sbjct: 136 VLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERD 195
Query: 276 -----------YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
+ KD V WT MI+GL G N AL VF M+R+ + PNE T V V
Sbjct: 196 VVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCV 255
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPA 382
L+AC G + G + R +R++ + HFV L+++ SR G + +A+ + M
Sbjct: 256 LSACSELGALQLG-RWVRSYMDKHRIE--LNHFVGGALINMYSRCGDIDEAQRVFEQM-K 311
Query: 383 EDKFISYKALL 393
E I+Y +++
Sbjct: 312 EKNVITYNSMI 322
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 134/289 (46%), Gaps = 51/289 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+ V K L S+ + LI YG+ F DAR +FD+MP RDV + +++ Y D
Sbjct: 149 GREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFD 208
Query: 62 FS------------------DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG 103
+S L +F+ + E ++ +++T+V + SAC+ L L G
Sbjct: 209 HGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLG 268
Query: 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
+ V Y K +E + AL+ MY++C ++DEA R+F++M +N+++ N +I G+
Sbjct: 269 RWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQM-KEKNVITYNSMIMGF-- 325
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223
+HG + EA+ELF+ +I +G TP V V
Sbjct: 326 ------------------------ALHG-----KSVEAVELFRGLIKQGFTPSSVTFVGV 356
Query: 224 LSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
L+ACS + G + H I ++D+ + G LEEA
Sbjct: 357 LNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEA 405
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + +++ K ++ + +VG +LI+ Y R +A+ +F++M ++V ++N+++ +
Sbjct: 267 LGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFA 326
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR--LEKLHYGKTVHCYATKVGLEYM 118
S E + LF+ LI +G +T V + +AC+ L +L + + H A G+E
Sbjct: 327 LHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGF-EIFHSMAKDYGIEPQ 385
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ ++ + + ++EA M + V L L++ ++LA V +V
Sbjct: 386 IEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLV 445
Query: 179 ---DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
+ D + + + + + +EA E+ M +EG+ + CSS ++
Sbjct: 446 ACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKE--------PGCSS---IEV 494
Query: 236 GRLVHRFIL 244
+H F+L
Sbjct: 495 NNEIHEFLL 503
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 19/179 (10%)
Query: 214 TPDEEV-MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
TP+ +S+L C + + ++ I++N+ QD FV L+ + S S+ A
Sbjct: 28 TPNRRRHFISLLQNCKHNNQIP---PIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYAS 84
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F T +V +T +I+GL + + ++YQM + P+ SVL AC
Sbjct: 85 KIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKAC---- 140
Query: 333 LITEGCQLFRRMGGVYRVQ-------PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
GC L + G Q + L++L + G A MP D
Sbjct: 141 ----GCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERD 195
>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
Length = 788
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 155/482 (32%), Positives = 255/482 (52%), Gaps = 35/482 (7%)
Query: 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD--------- 64
+S I V NSLI Y RM AR +FD+M +DV SW L+ +Y++ D
Sbjct: 278 FESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLD 337
Query: 65 ----------------------SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHY 102
+ E + L+ Q++ +G + + SACA LE L
Sbjct: 338 AMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDLRG 397
Query: 103 GKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY- 161
G +H + K+G + + +L+ MY KC + +A +FD + ++NIV N L++GY
Sbjct: 398 GARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTL-PQKNIVCWNSLVSGYS 456
Query: 162 IDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMV 221
+ ++V+ A +F ++ +++ W +++ G + +Q +AL+ F M+ G P E
Sbjct: 457 YNGKMVE-AMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFS 515
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK 281
SVL AC++L +L G++ H ++ I + F+ TAL DMY+K G L+ + FY+ +
Sbjct: 516 SVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPER 575
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
+ VTWT MI+GLA G E++ +F M G+ PNE TF+++L AC H GL+ + F
Sbjct: 576 NDVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYF 635
Query: 342 RRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401
+M + + P +H+ C+VD+L+RAG L +AE + P++ + S+ ALLSAC TY
Sbjct: 636 DKMQAL-GISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEANSWAALLSACNTYRN 694
Query: 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
++ ++ A + +L + YVLLSN YA G W + A R MK +K G S +
Sbjct: 695 EEIAERAAKRLHELAKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQ 754
Query: 462 LK 463
++
Sbjct: 755 VR 756
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 118/491 (24%), Positives = 206/491 (41%), Gaps = 110/491 (22%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMA-------LFTD--------------------- 36
LHAH ++ + +D V + L+ Y A F D
Sbjct: 102 LHAHAVRSGVAADRSVASHLLTTYAAFARAAERDRAFGDCVAADAASPFAYDFMVSEHVK 161
Query: 37 ------ARVLFDKMPFRDVGSWNTLMS-------------IYNDFSDSGEV--------- 68
AR LFD MP R V S+ T++ +Y SG V
Sbjct: 162 AGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQ-CPSGSVAFFTATISG 220
Query: 69 ----------LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL-EY 117
L +F++++ + + IT+V + AC + ++ A K E
Sbjct: 221 FVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAIKSNFFES 280
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ ++N+L+ +Y + + A ++FDEM +++VS L++ Y + +D AR V D +
Sbjct: 281 SIEVQNSLITLYLRMGDAAAARKVFDEM-DVKDVVSWTALLDVYSESGDLDGARRVLDAM 339
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+++ V W +++ + EA++L+ +M+ +G P+ SVLSAC+SL +L+ G
Sbjct: 340 PERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDLRGGA 399
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKC-------------------------------G 266
+H L+ + + FV +LIDMY KC G
Sbjct: 400 RIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGYSYNG 459
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+ EA+ F K +++ +W T+I G A +AL+ F M G P E TF SVL
Sbjct: 460 KMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFSSVLL 519
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIMPA 382
AC + + G +M ++ IE + L D+ +++G L ++ MP
Sbjct: 520 ACANLCSLVTG-----KMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMP- 573
Query: 383 EDKFISYKALL 393
E +++ A++
Sbjct: 574 ERNDVTWTAMI 584
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 88/205 (42%), Gaps = 14/205 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK HA K ++ I++G +L Y + ++ +F +MP R+ +W ++ +
Sbjct: 530 GKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAE 589
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACAR----LEKLHYGKTVHCYATKVGLEY 117
+ E ++LF+ ++ G+ ++ T + L AC+ + +HY + ++
Sbjct: 590 NGFAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFDKMQALGISPKEKH 649
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI---NGYIDMELVDLAREVF 174
M + L A+ + EA L + S+ S L+ N Y + E+ + A +
Sbjct: 650 YTCMVDVL----ARAGRLAEAEALLMKTPSKSEANSWAALLSACNTYRNEEIAERAAKRL 705
Query: 175 DEIVDKDI---VLWRSMMHGCVKAK 196
E+ + VL +M C + K
Sbjct: 706 HELAKDNTAGYVLLSNMYASCGRWK 730
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 1/157 (0%)
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
T ++D K G + EA+ + + V +T I G L + AL VF +M ++
Sbjct: 184 TTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMLSCRVR 243
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
PN T V ++ AC +G + + +IE L+ L R G A +
Sbjct: 244 PNGITIVCMIKACVGAGEFGLALSIVGLAIKSNFFESSIEVQNSLITLYLRMGDAAAARK 303
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
M +D +S+ ALL + D ++V + M
Sbjct: 304 VFDEMDVKD-VVSWTALLDVYSESGDLDGARRVLDAM 339
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 149/397 (37%), Positives = 229/397 (57%), Gaps = 9/397 (2%)
Query: 72 FKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHCYATKVGLEYMLNM-ENALL 126
F + G+ + IT + L S L E L G +H YA K+GL+ M A+L
Sbjct: 2 FSGMRLAGVEPNHITFIALLSGWGDLLSGSEAL--GDLLHGYACKLGLDRAHVMVGTAIL 59
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
MY+K +A +FD M +N V+ N +I+GY+ VD A ++FDE+ ++D++ W
Sbjct: 60 GMYSKRGRFRKARLVFDYM-EEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWT 118
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
+M++G VK EEAL F++M GV PD +++ L+AC++L L +G +HR+++
Sbjct: 119 AMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQ 178
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ + V +LID+Y +CG +E A F K + + VV+W ++I G A G +E+L F
Sbjct: 179 DFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYF 238
Query: 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366
+M+ +G KPN TF LAAC H GL+ EG + F+ M YR+ P IEH+ CLVDL SR
Sbjct: 239 RKMQEEGFKPNAVTFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSR 298
Query: 367 AGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD-LGKKVANNMMKLGNQSHEAYVL 425
AG L A + ++ MP + + +LL+AC T L ++V ++ L +SH YV+
Sbjct: 299 AGRLEDALKVVQSMPMKPNEVVIGSLLAACRTQGNNTVLAERVMKHLSDLNVKSHSNYVI 358
Query: 426 LSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
LSN YA +G W ++ RR MK L +K+PG S I++
Sbjct: 359 LSNMYAADGKWEGASKMRRKMKGLGLKKEPGFSSIEI 395
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 129/315 (40%), Gaps = 73/315 (23%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSG---EVLILFKQLIFE 78
N++I Y R DA LFD+MP RD+ SW ++ N F G E L F+++
Sbjct: 87 NTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMI---NGFVKKGFHEEALAWFREMQIS 143
Query: 79 GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEA 138
G+ D + ++ +AC L L +G +H Y + + + N+L+ +Y +C ++ A
Sbjct: 144 GVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFA 203
Query: 139 LRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP 198
++FD+M +R +VS W S++ G
Sbjct: 204 RQVFDKM-EKRTVVS-------------------------------WNSVIVGFAANGHA 231
Query: 199 EEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTA 257
E+L F+KM +EG P+ L+AC+ + ++ G R I+
Sbjct: 232 HESLVYFRKMQEEGFKPNAVTFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGC 291
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
L+D+YS+ G LE +AL+V M +KPN
Sbjct: 292 LVDLYSRAGRLE-------------------------------DALKVVQSMP---MKPN 317
Query: 318 EATFVSVLAACRHSG 332
E S+LAACR G
Sbjct: 318 EVVIGSLLAACRTQG 332
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H +V +++ V NSLI Y R AR +FDKM R V SWN+++ +
Sbjct: 168 GLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAA 227
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L+ F+++ EG + +T +AC H + GL Y +M
Sbjct: 228 NGHAHESLVYFRKMQEEGFKPNAVTFTGALAACN-----------HVGLVEEGLRYFQSM 276
Query: 122 E------------NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
+ L+ +Y++ +++AL++ M + N V + L+
Sbjct: 277 KRDYRISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVIGSLL 325
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 153/464 (32%), Positives = 243/464 (52%), Gaps = 39/464 (8%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG-------IVADKITLVI 89
AR++FD++P D +NTL+ + + ++ ++ + DK T
Sbjct: 61 ARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPF 120
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD------ 143
+ ACA + G VH + K G E + NAL+ M+A ++ A LFD
Sbjct: 121 VLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEARED 180
Query: 144 ---------------EMGSRR---------NIVSLNILINGYIDMELVDLAREVFDEIVD 179
++G+ R ++VS N++I Y + + ARE+FD D
Sbjct: 181 AVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPD 240
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D+V W +M+ G V+ ++A+ELF++M G PD M+S+LSAC+ +L GR +
Sbjct: 241 RDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRL 300
Query: 240 HRFILQ--NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
H F+ + I + ALIDMY+KCGS+ AL F+ K+V TW ++I GLA +G
Sbjct: 301 HGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHG 360
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
E++ VF +M + +KP+E TFV+VLAAC H G++ +G + F M YR++P I+H+
Sbjct: 361 HATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHY 420
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VD+LSR GLL +A EFI M E + ++ LL AC + E +L + ++K +
Sbjct: 421 GCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARS 480
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+ +VLLSN YA G W R+ M + K+ G ++ID
Sbjct: 481 DASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVID 524
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 128/285 (44%), Gaps = 50/285 (17%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ N +I Y ++ AR LFD P RDV SWN ++S Y + + LF+Q+
Sbjct: 211 DLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQ 270
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYA----TKVGLEYMLNMENALLLMYAKC 132
G D +T++ L SACA L G+ +H + +++G L NAL+ MYAKC
Sbjct: 271 AMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALG--NALIDMYAKC 328
Query: 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC 192
M AL EVF + DK++ W S++ G
Sbjct: 329 GSMTSAL--------------------------------EVFWLMQDKNVSTWNSIIGGL 356
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQNN 247
E++ +F+KM+ V PDE V+VL+ACS + G + R+ ++ N
Sbjct: 357 ALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPN 416
Query: 248 ITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMI 290
I ++DM S+ G L+EA + K + V+ W T++
Sbjct: 417 IKH----YGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVI-WRTLL 456
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 153/464 (32%), Positives = 243/464 (52%), Gaps = 39/464 (8%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG-------IVADKITLVI 89
AR++FD++P D +NTL+ + + ++ ++ + DK T
Sbjct: 61 ARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPF 120
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD------ 143
+ ACA + G VH + K G E + NAL+ M+A ++ A LFD
Sbjct: 121 VLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEARED 180
Query: 144 ---------------EMGSRR---------NIVSLNILINGYIDMELVDLAREVFDEIVD 179
++G+ R ++VS N++I Y + + ARE+FD D
Sbjct: 181 AVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPD 240
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+D+V W +M+ G V+ ++A+ELF++M G PD M+S+LSAC+ +L GR +
Sbjct: 241 RDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRL 300
Query: 240 HRFILQ--NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
H F+ + I + ALIDMY+KCGS+ AL F+ K+V TW ++I GLA +G
Sbjct: 301 HGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHG 360
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
E++ VF +M + +KP+E TFV+VLAAC H G++ +G + F M YR++P I+H+
Sbjct: 361 HATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHY 420
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VD+LSR GLL +A EFI M E + ++ LL AC + E +L + ++K +
Sbjct: 421 GCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARS 480
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+ +VLLSN YA G W R+ M + K+ G ++ID
Sbjct: 481 DASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVID 524
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 128/285 (44%), Gaps = 50/285 (17%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ N +I Y ++ AR LFD P RDV SWN ++S Y + + LF+Q+
Sbjct: 211 DLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQ 270
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYA----TKVGLEYMLNMENALLLMYAKC 132
G D +T++ L SACA L G+ +H + +++G L NAL+ MYAKC
Sbjct: 271 AMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALG--NALIDMYAKC 328
Query: 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC 192
M AL EVF + DK++ W S++ G
Sbjct: 329 GSMTSAL--------------------------------EVFWLMQDKNVSTWNSIIGGL 356
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-----LVHRFILQNN 247
E++ +F+KM+ V PDE V+VL+ACS + G + R+ ++ N
Sbjct: 357 ALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPN 416
Query: 248 ITQDAFVKTALIDMYSKCGSLEEA--LVTFYKTDCKDVVTWTTMI 290
I ++DM S+ G L+EA + K + V+ W T++
Sbjct: 417 IKH----YGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVI-WRTLL 456
>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g45350, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
Length = 613
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 159/462 (34%), Positives = 253/462 (54%), Gaps = 7/462 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + KT L SD+++ N LI Y + +R +FD+MP RD S+N+++ Y
Sbjct: 140 GMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVK 199
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
LI+ + +F+ + + L+ S + + G + E L
Sbjct: 200 CG-----LIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLIS 254
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+++ Y K +++A LFD M RR++V+ +I+GY + V A+ +FD++ +D
Sbjct: 255 WNSMIDGYVKHGRIEDAKGLFDVM-PRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRD 313
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V + SMM G V+ K EALE+F M E + PD+ +V VL A + L L +H
Sbjct: 314 VVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMH 373
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I++ + ALIDMYSKCGS++ A++ F + K + W MI GLA +GLG
Sbjct: 374 LYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGE 433
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A + Q+ER +KP++ TFV VL AC HSGL+ EG F M ++++P ++H+ C+
Sbjct: 434 SAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 493
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+LSR+G + A+ I+ MP E + ++ L+AC + EF+ G+ VA +++ +
Sbjct: 494 VDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNP 553
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+YVLLSN YA G W +V R MKE + K PG S I+L
Sbjct: 554 SSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIEL 595
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 166/331 (50%), Gaps = 24/331 (7%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN ++ ++ D + L+L ++ G+ DK +L ++ AC+RL + G +H +
Sbjct: 89 WNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLK 148
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K GL L ++N L+ +Y KC + + ++FD M +R+ VS N +I+GY+ L+ AR
Sbjct: 149 KTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRM-PKRDSVSYNSMIDGYVKCGLIVSAR 207
Query: 172 EVFD--EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
E+FD + K+++ W SM+ G Q + +++ K+ + P+++ ++S S
Sbjct: 208 ELFDLMPMEMKNLISWNSMISG---YAQTSDGVDIASKLFAD--MPEKD----LISWNSM 258
Query: 230 LSN-LQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+ +++GR+ + + +D +ID Y+K G + A F + +DVV +
Sbjct: 259 IDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYN 318
Query: 288 TMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
+M+ G EAL +F ME++ + P++ T V VL A G +++ +
Sbjct: 319 SMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMH----- 373
Query: 347 VYRVQPTI----EHFVCLVDLLSRAGLLYQA 373
+Y V+ + V L+D+ S+ G + A
Sbjct: 374 LYIVEKQFYLGGKLGVALIDMYSKCGSIQHA 404
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 42/267 (15%)
Query: 166 LVDLAREVFDEI--------VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217
L D AR VF E +D LW +++ K P +AL L M++ GV+ D+
Sbjct: 62 LADFARCVFHEYHVCSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDK 121
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
+ VL ACS L ++ G +H F+ + + D F++ LI +Y KCG L + F +
Sbjct: 122 FSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDR 181
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVF--YQMERKGIKPNEATFVSVLAA-CRHSGLI 334
+D V++ +MI+G GL A +F ME K N ++ S+++ + S +
Sbjct: 182 MPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMK----NLISWNSMISGYAQTSDGV 237
Query: 335 TEGCQLFRRMG------------------------GVYRVQP--TIEHFVCLVDLLSRAG 368
+LF M G++ V P + + ++D ++ G
Sbjct: 238 DIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLG 297
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSA 395
++ A+ MP D ++Y ++++
Sbjct: 298 FVHHAKTLFDQMPHRD-VVAYNSMMAG 323
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 85/187 (45%), Gaps = 18/187 (9%)
Query: 221 VSVLSACSSLSNLQ--YGRLVHRFILQN-NITQD-----AFVKTALIDMYSKCGSLEEAL 272
+ VL +C + ++ +GRL+ I++N N+T A + + +++C E +
Sbjct: 16 IHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHV 75
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
+F + +D W +I+ ++ +AL + M G+ ++ + VL AC G
Sbjct: 76 CSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLG 135
Query: 333 LITEGCQL--FRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
+ G Q+ F + G++ + F+ CL+ L + G L + + MP D +S
Sbjct: 136 FVKGGMQIHGFLKKTGLWS-----DLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDS-VS 189
Query: 389 YKALLSA 395
Y +++
Sbjct: 190 YNSMIDG 196
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/459 (32%), Positives = 248/459 (54%), Gaps = 34/459 (7%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HA + K L+S + +SLI Y + AR +F+ +P RDV SWN +M Y +
Sbjct: 151 HALLEKIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMN 210
Query: 66 GEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
GEV + + ++ +G +V + +TL ++ +AC L G+ V ++ G+E + +A
Sbjct: 211 GEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSA 270
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MY KC E+ EA R+FD I+DKD+V
Sbjct: 271 LVGMYEKCGEIAEARRVFD--------------------------------SIIDKDVVA 298
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ G + EA+ LF M GV PD+ + VLSACS++ L+ G + +
Sbjct: 299 WNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYAS 358
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ + +V TAL+DMY+KCG L++A+ F K CK+V +W +I GLA G G+EA++
Sbjct: 359 CRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQ 418
Query: 305 VFYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
F M + G+KP++ TF+ VL+AC H+GL+ +G + F + +++ P IEH+ C+VD
Sbjct: 419 HFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEHYSCMVDP 478
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L+R+G L + +FI+ +P + + ALL+AC ++G++V N +++L + Y
Sbjct: 479 LARSGHLEEVWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPTNSWNY 538
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
V+ S YA G + A+ R M+E K PG S +++
Sbjct: 539 VVSSKIYASSGRLDDSAKMRGLMRERGVNKTPGCSWVEI 577
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 34/272 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + +++D VG++L+ Y + +AR +FD + +DV +WN +++ Y
Sbjct: 248 LGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYA 307
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E + LF + G+ DKITL + SAC+ + L G + YA+ GL +
Sbjct: 308 QNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVY 367
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAKC ++D+A+ +F +M K
Sbjct: 368 VGTALVDMYAKCGDLDKAIEVFRKMRC--------------------------------K 395
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYG-RL 238
++ W +++ G Q +EA++ F+ M +E G+ PD+ + VLSAC ++ G R
Sbjct: 396 NVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRW 455
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
+ + I + ++D ++ G LEE
Sbjct: 456 FNSLTSEFQIIPKIEHYSCMVDPLARSGHLEE 487
>gi|357446017|ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482334|gb|AES63537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 622
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 141/467 (30%), Positives = 255/467 (54%), Gaps = 34/467 (7%)
Query: 1 MGKGLHAHVT---KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS 57
+G+ +H V + + +++ + + FY R AR +FD+M ++ SW ++S
Sbjct: 187 IGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCGDSLMARSVFDEMEVKNEVSWTAVIS 246
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ D L ++++ EG+ +++TL+ L +ACAR + YGK +H YA + G +
Sbjct: 247 GCANNQDYDVALACYREMQVEGVSPNRVTLIALLAACARPGFVKYGKEIHGYAFRRGFDS 306
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ AL+ +Y +C + + LA +F+
Sbjct: 307 CHSFSPALIYLYCECGQS-------------------------------LHLAERIFEGS 335
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+D+VLW S++ + + ++AL+LF KM E P+ +++V+SAC++LS+ ++G
Sbjct: 336 SLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGG 395
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
++H +IL+ I FV ALI+MY+KCGSL+++ F + +D VTW +MI +G
Sbjct: 396 VIHGYILKFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHG 455
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G +AL+ FY+M+ +G+K + TF++VL+AC H+GL+TEG QLF ++ + TIEH+
Sbjct: 456 YGEQALQHFYEMKERGVKLDAVTFLAVLSACNHAGLVTEGQQLFEQVNADCEIPITIEHY 515
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
CL+DL R+G L A E ++ MP + + +L+S+C + D+ + +++ +++
Sbjct: 516 ACLIDLHGRSGKLEDALEILRTMPMKPSARIWSSLVSSCKLHGRLDIAESLSSQLIRSEP 575
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ +Y LLS +A +G W ++ + R MK + RK G S I+ H
Sbjct: 576 NNAASYTLLSMIHAEKGRWLDIEQVRETMKLQRLRKCYGFSRIEAGH 622
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/408 (25%), Positives = 188/408 (46%), Gaps = 56/408 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH T +D V NS+I Y + AR +FD MP RD +WN++++ Y
Sbjct: 85 GTQLHCLAFITGSYTDPIVSNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQ 144
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHY--GKTVHCYAT---KVGLE 116
E L + K F G + L + S C R L + G+ +H ++ ++
Sbjct: 145 NGLLVEALQMLKDFYFLGFLPKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQ 204
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + + A + Y +C + A +FDEM EV +E
Sbjct: 205 HSVFLSTAFVDFYFRCGDSLMARSVFDEM--------------------------EVKNE 238
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
V W +++ GC + + AL +++M EGV+P+ ++++L+AC+ ++YG
Sbjct: 239 ------VSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTLIALLAACARPGFVKYG 292
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCG-SLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
+ +H + + ALI +Y +CG SL A F + +DVV W+++I A
Sbjct: 293 KEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSLRDVVLWSSIIGSYAR 352
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAAC------RHSGLITEGCQLFRRMGGVYR 349
G ++AL++F +M + +PN T ++V++AC +H G+I G + +
Sbjct: 353 RGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGVI---------HGYILK 403
Query: 350 VQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
FVC L+++ ++ G L + + MP+ D +++ +++SA
Sbjct: 404 FGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDS-VTWNSMISA 450
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 94/391 (24%), Positives = 164/391 (41%), Gaps = 73/391 (18%)
Query: 67 EVLILFKQLIFEGIVADKITLVI--LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ L F QL F + I V+ + AC+ +G +HC A G + N+
Sbjct: 47 QTLQFFTQLHFSAHHFNSIPFVLPSVIKACSFTHFHAFGTQLHCLAFITGSYTDPIVSNS 106
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
++ MYAK FD ++ AR+VFD + +D +
Sbjct: 107 IISMYAK---------FFD-----------------------IESARQVFDTMPHRDTIT 134
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY--GRLVHRF 242
W SM++ ++ EAL++ K G P E++ S++S C +L + GR +H
Sbjct: 135 WNSMINAYLQNGLLVEALQMLKDFYFLGFLPKPELLASMVSMCGREMDLGWRIGRQIHGL 194
Query: 243 ILQNN---ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
++ + I F+ TA +D Y +CG A F + + K+ V+WT +I G AN
Sbjct: 195 VVVDGRIRIQHSVFLSTAFVDFYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDY 254
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL----FRR-MGGVYRVQPTI 354
+ AL + +M+ +G+ PN T +++LAAC G + G ++ FRR + P +
Sbjct: 255 DVALACYREMQVEGVSPNRVTLIALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPAL 314
Query: 355 EHFVC--------------------------LVDLLSRAGLLYQAEEFIKIMPAED---K 385
+ C ++ +R G +A + M E+
Sbjct: 315 IYLYCECGQSLHLAERIFEGSSLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPN 374
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLG 416
+++ A++SAC S F G + ++K G
Sbjct: 375 YVTLLAVISACTNLSSFKHGGVIHGYILKFG 405
>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Vitis vinifera]
Length = 685
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 158/454 (34%), Positives = 243/454 (53%), Gaps = 1/454 (0%)
Query: 8 HVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGE 67
HV + D + ++LI Y DAR +F V WN+++S Y +++ E
Sbjct: 229 HVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALE 288
Query: 68 VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLL 127
L LF + +G+ D T + SAC+ L + G VH + KVG + +++AL+
Sbjct: 289 ALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVD 348
Query: 128 MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRS 187
MY+KC+ D+A +LF ++ + I+ LN +I Y + +D AR++FD + K ++ W S
Sbjct: 349 MYSKCRRPDDACKLFSDLQAYDTIL-LNSMITVYSNCGRIDDARQIFDTMPSKSLISWNS 407
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247
M+ G + P EAL+LF +M G+ D+ + V+SAC+S+S+L+ G +
Sbjct: 408 MIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIG 467
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
+ D + T+L+D Y KCG +E F + D V W +M+ G A G G EAL VF
Sbjct: 468 LEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFD 527
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367
QM G++P + TFV VL+AC H GL+ EG + F M Y + P IEH+ C+VDL +RA
Sbjct: 528 QMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARA 587
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427
GLL A I+ MP + + ++L C+ + LGKKVA ++ L ++ AYV LS
Sbjct: 588 GLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLS 647
Query: 428 NFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YA W A+ R+ M + + K PG S D
Sbjct: 648 GIYATFEDWGRSAQVRKLMYDKKIPKVPGCSWAD 681
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 103/405 (25%), Positives = 169/405 (41%), Gaps = 117/405 (28%)
Query: 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ LH K+ L S + +GN L+ Y R +A+ LF++MP R+ SWNT++ Y
Sbjct: 25 GRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYL 84
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
G+ L LF + + D + ++ S
Sbjct: 85 KSGSKGKSLELFDSMPHK----DAFSWNVVISG--------------------------- 113
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+AK ++ A RLF+EM + I
Sbjct: 114 --------FAKEGNLEVARRLFNEMPWKNGIA---------------------------- 137
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP------DEEVMVSVLSACSSLSNLQ 234
W SM+HG +P+EA+ LFK D + P D V+ +V+ AC++L L
Sbjct: 138 ----WNSMIHGYACNGRPKEAVGLFK---DLSLNPLERFCGDTFVLATVVGACTNLGALD 190
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE-----------------EALVTFYK 277
G+ +H I+ + + D+ + ++L+++Y KCG ++ AL++ Y
Sbjct: 191 CGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYA 250
Query: 278 T-----DCKD---------VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
+ D + VV W +MI G EAL +F M RKG++ + +TF S
Sbjct: 251 SCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFAS 310
Query: 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSR 366
VL+AC G+I +G Q+ VY+V T + + LVD+ S+
Sbjct: 311 VLSACSTLGIIDQGIQVHAH---VYKVGFTNDIIIDSALVDMYSK 352
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 7/185 (3%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + A T L+ D + SL+ FY + L R LFD+M D WN+++ Y
Sbjct: 455 LGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYA 514
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L +F Q+ G+ IT V + SAC + G+ YA K L+Y +N
Sbjct: 515 TNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWF-YAMK--LDYHIN 571
Query: 121 ME----NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ ++ +YA+ +++A+ L ++M + + + ++ G + L ++V
Sbjct: 572 PGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKR 631
Query: 177 IVDKD 181
I+D D
Sbjct: 632 IIDLD 636
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF-VKTALIDMYSKCGSLEEA 271
V D + L +C++ ++ GRL+H L++ + + L+ MYS+C S+ EA
Sbjct: 2 VDLDLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 61
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
F + ++ +W TMIEG G ++L +F M K
Sbjct: 62 QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHK 102
>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 146/461 (31%), Positives = 251/461 (54%), Gaps = 33/461 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HA+ + LDS++ +GN+LI Y + F+ M +D+ SW T+++ Y
Sbjct: 368 GKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQ 427
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + LF+++ +G+ D + + + AC+ L+ ++ + +H Y K L ++ +
Sbjct: 428 NECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIM-L 486
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+NA++ +Y E+G R D AR F+ I KD
Sbjct: 487 QNAIVNVYG-------------EVGHR-------------------DYARRAFESIRSKD 514
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W SM+ CV P EALELF + + PD ++S LSA ++LS+L+ G+ +H
Sbjct: 515 IVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHG 574
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F+++ + + ++L+DMY+ CG++E + F+ +D++ WT+MI +G GNE
Sbjct: 575 FLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNE 634
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ +F +M + + P+ TF+++L AC HSGL+ EG + F M Y+++P EH+ C+V
Sbjct: 635 AIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMV 694
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLLSR+ L +A +F++ MP + + ALL AC +S +LG+ A +++ ++
Sbjct: 695 DLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSG 754
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y L+SN +A +G W +V E R MK +K PG S I++
Sbjct: 755 KYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEV 795
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 157/336 (46%), Gaps = 32/336 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHA + K+ L + ++ L+H Y + DA +FD+M R + +WN +M +
Sbjct: 65 GQQLHARLLKSHLSA--FLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVS 122
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + L+K++ G+ D T + AC L + G +H A K G + +
Sbjct: 123 SGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFV 182
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC ++ A LFD I ME +D
Sbjct: 183 CNALIAMYGKCGDLGGARVLFDG-----------------IMME-------------KED 212
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W S++ V + EAL LF++M + GV + V+ L S ++ G +H
Sbjct: 213 TVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHG 272
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
L++N D +V ALI MY+KCG +E+A F C+D V+W T++ GL L +
Sbjct: 273 AALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRD 332
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
AL F M+ KP++ + ++++AA SG + G
Sbjct: 333 ALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNG 368
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 166/332 (50%), Gaps = 43/332 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G G+H K+ +D+YV N+LI Y + DA +F M RD SWNTL+S +
Sbjct: 266 LGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLV 325
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N+ + L F+ + D+++++ L +A R L GK VH YA + GL+
Sbjct: 326 QNELYR--DALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSN 383
Query: 119 LNMENALLLMYAKC---KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ + N L+ MYAKC K M GY F+
Sbjct: 384 MQIGNTLIDMYAKCCCVKHM------------------------GY-----------AFE 408
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
+ +KD++ W +++ G + + EA+ LF+K+ +G+ D ++ SVL ACS L + +
Sbjct: 409 CMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNF 468
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
R +H ++ + ++ D ++ A++++Y + G + A F KD+V+WT+MI +
Sbjct: 469 IREIHGYVFKRDLA-DIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVH 527
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
GL EAL +FY +++ I+P+ +S L+A
Sbjct: 528 NGLPVEALELFYSLKQTNIQPDSIAIISALSA 559
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 153/335 (45%), Gaps = 36/335 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDK--MPFRDVGSWNTLMSI 58
+G +H K ++V N+LI YG+ ARVLFD M D SWN+++S
Sbjct: 163 LGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISA 222
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ E L LF+++ G+ ++ T V + G +H A K
Sbjct: 223 HVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFAD 282
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + NAL+ MYAKC M++A R+F M R
Sbjct: 283 VYVANALIAMYAKCGRMEDAERVFASMLCR------------------------------ 312
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D V W +++ G V+ + +AL F+ M + PD+ ++++++A NL G+
Sbjct: 313 --DYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKE 370
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH + ++N + + + LIDMY+KC ++ F KD+++WTT+I G A
Sbjct: 371 VHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNEC 430
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
EA+ +F +++ KG+ + SVL AC SGL
Sbjct: 431 HLEAINLFRKVQVKGMDVDPMMIGSVLRAC--SGL 463
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 157/389 (40%), Gaps = 61/389 (15%)
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+L C ++ L G+ +H K L L + LL MY KC + +A++
Sbjct: 51 LLLDLCVAVKALPQGQQLHARLLKSHLSAFLATK--LLHMYEKCGSLKDAVK-------- 100
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
VFDE+ ++ I W +MM V + + EA+EL+K+M
Sbjct: 101 ------------------------VFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEM 136
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
GV D SVL AC +L + G +H ++ + FV ALI MY KCG L
Sbjct: 137 RVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDL 196
Query: 269 EEALVTF--YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
A V F + +D V+W ++I G EAL +F +M+ G+ N TFV+ L
Sbjct: 197 GGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQ 256
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV------CLVDLLSRAGLLYQAEEFIKIM 380
+ G G++ HF L+ + ++ G + AE M
Sbjct: 257 GVEDPSFVKLGM-------GIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASM 309
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV- 439
D ++S+ LLS + + +M + + VL N A G +
Sbjct: 310 LCRD-YVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVL--NLIAASGRSGNLL 366
Query: 440 ------AEARRNMKELQTRKKPGNSIIDL 462
A A RN L + + GN++ID+
Sbjct: 367 NGKEVHAYAIRN--GLDSNMQIGNTLIDM 393
>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
Length = 606
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 159/462 (34%), Positives = 253/462 (54%), Gaps = 7/462 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + KT L SD+++ N LI Y + +R +FD+MP RD S+N+++ Y
Sbjct: 133 GMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVK 192
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
LI+ + +F+ + + L+ S + + G + E L
Sbjct: 193 CG-----LIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLIS 247
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+++ Y K +++A LFD M RR++V+ +I+GY + V A+ +FD++ +D
Sbjct: 248 WNSMIDGYVKHGRIEDAKGLFDVM-PRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRD 306
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V + SMM G V+ K EALE+F M E + PD+ +V VL A + L L +H
Sbjct: 307 VVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMH 366
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I++ + ALIDMYSKCGS++ A++ F + K + W MI GLA +GLG
Sbjct: 367 LYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGE 426
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A + Q+ER +KP++ TFV VL AC HSGL+ EG F M ++++P ++H+ C+
Sbjct: 427 SAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 486
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+LSR+G + A+ I+ MP E + ++ L+AC + EF+ G+ VA +++ +
Sbjct: 487 VDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNP 546
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+YVLLSN YA G W +V R MKE + K PG S I+L
Sbjct: 547 SSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIEL 588
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 166/331 (50%), Gaps = 24/331 (7%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN ++ ++ D + L+L ++ G+ DK +L ++ AC+RL + G +H +
Sbjct: 82 WNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLK 141
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K GL L ++N L+ +Y KC + + ++FD M +R+ VS N +I+GY+ L+ AR
Sbjct: 142 KTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRM-PKRDSVSYNSMIDGYVKCGLIVSAR 200
Query: 172 EVFD--EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
E+FD + K+++ W SM+ G Q + +++ K+ + P+++ ++S S
Sbjct: 201 ELFDLMPMEMKNLISWNSMISG---YAQTSDGVDIASKLFAD--MPEKD----LISWNSM 251
Query: 230 LSN-LQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+ +++GR+ + + +D +ID Y+K G + A F + +DVV +
Sbjct: 252 IDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYN 311
Query: 288 TMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
+M+ G EAL +F ME++ + P++ T V VL A G +++ +
Sbjct: 312 SMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMH----- 366
Query: 347 VYRVQPTI----EHFVCLVDLLSRAGLLYQA 373
+Y V+ + V L+D+ S+ G + A
Sbjct: 367 LYIVEKQFYLGGKLGVALIDMYSKCGSIQHA 397
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 42/267 (15%)
Query: 166 LVDLAREVFDEI--------VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217
L D AR VF E +D LW +++ K P +AL L M++ GV+ D+
Sbjct: 55 LADFARCVFHEYHVCSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDK 114
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
+ VL ACS L ++ G +H F+ + + D F++ LI +Y KCG L + F +
Sbjct: 115 FSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDR 174
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVF--YQMERKGIKPNEATFVSVLAA-CRHSGLI 334
+D V++ +MI+G GL A +F ME K N ++ S+++ + S +
Sbjct: 175 MPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMK----NLISWNSMISGYAQTSDGV 230
Query: 335 TEGCQLFRRMG------------------------GVYRVQP--TIEHFVCLVDLLSRAG 368
+LF M G++ V P + + ++D ++ G
Sbjct: 231 DIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLG 290
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSA 395
++ A+ MP D ++Y ++++
Sbjct: 291 FVHHAKTLFDQMPHRD-VVAYNSMMAG 316
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 85/187 (45%), Gaps = 18/187 (9%)
Query: 221 VSVLSACSSLSNLQ--YGRLVHRFILQN-NITQD-----AFVKTALIDMYSKCGSLEEAL 272
+ VL +C + ++ +GRL+ I++N N+T A + + +++C E +
Sbjct: 9 IHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHV 68
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
+F + +D W +I+ ++ +AL + M G+ ++ + VL AC G
Sbjct: 69 CSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLG 128
Query: 333 LITEGCQL--FRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
+ G Q+ F + G++ + F+ CL+ L + G L + + MP D +S
Sbjct: 129 FVKGGMQIHGFLKKTGLWS-----DLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDS-VS 182
Query: 389 YKALLSA 395
Y +++
Sbjct: 183 YNSMIDG 189
>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 147/462 (31%), Positives = 244/462 (52%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK HA + L +D+ N LI+ Y + AR +FD+MP R + SWNT++
Sbjct: 83 GKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQ 142
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L L Q+ EG + T+ + ACA L + +H +A K ++ + +
Sbjct: 143 NGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFV 202
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ALL +YAKC M +A+ +F+ M D+
Sbjct: 203 ATALLDVYAKCGLMKDAVCVFESMP--------------------------------DRS 230
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W SM G V+ + E+AL LF+K + G+ D+ +M SV+ AC+ L+ + G+ ++
Sbjct: 231 VVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNA 290
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ ++ + FV ++LIDMY+KCG +EE+ F + ++VV W MI GL+ + E
Sbjct: 291 LLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLE 350
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
+ +F +M++ G+ PN+ TFVSVL+AC H GL+ +G + F M + + P + H+ C+V
Sbjct: 351 VMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMV 410
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D LSRAG +++A + I +P + +LL++C T+ +L + A + + +
Sbjct: 411 DTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSG 470
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+LLSN YA G W EVA+ R+ +KE +K+ G S I++K
Sbjct: 471 NYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIK 512
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 32/247 (12%)
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
CA+ + L GK H +GL+ L N L+ MY+KC +D A ++FDEM SR
Sbjct: 74 CAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSR----- 128
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
+V W +M+ + + EAL+L +M EG
Sbjct: 129 ---------------------------SLVSWNTMIGSLTQNGEENEALDLLLQMQREGT 161
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
E + SVL AC++ L +L+H F ++ + + FV TAL+D+Y+KCG +++A+
Sbjct: 162 PFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVC 221
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F + VVTW++M G + +AL +F + G+K ++ SV+ AC
Sbjct: 222 VFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAA 281
Query: 334 ITEGCQL 340
+ EG Q+
Sbjct: 282 MIEGKQM 288
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
+L C+ L G+ H IL + D LI+MYSKCGS++ A F + +
Sbjct: 70 ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
+V+W TMI L G NEAL + QM+R+G +E T SVL AC ++E CQL
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSE-CQLLH 188
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
+ + L+D+ ++ GL+ A + MP
Sbjct: 189 AFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP 227
>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 589
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 244/462 (52%), Gaps = 33/462 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HA K S +V N+LI Y + L TDA ++ + M + S+N L++ + +
Sbjct: 120 GLQVHAQSLKLGCVSVSFVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVE 179
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + FK + +G D+ T L C + G +HC K+ LE +
Sbjct: 180 NQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSAFI 239
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N ++ MY+K L++ A +VF I +KD
Sbjct: 240 GNVIITMYSK--------------------------------FNLIEEAEKVFGLIKEKD 267
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ W +++ C K E AL +F+ M+D V PD+ VL+AC+ L+++++G+ +H
Sbjct: 268 LISWNTLVTACCFCKDHERALRVFRDMLDVCFVKPDDFTFAGVLAACAGLASIRHGKQIH 327
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ QD V AL++MY+KCGS++ + F +T +++V+W T+I N+GLG
Sbjct: 328 GHLIRTRQYQDVGVSNALVNMYAKCGSIKNSYDVFRRTSDRNLVSWNTIIAAFGNHGLGA 387
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL F +M+ GI P+ TFV +L AC H+GL+ EG F M Y + P IEHF CL
Sbjct: 388 RALEHFEKMKTVGIHPDSVTFVGLLTACNHAGLVEEGQVYFNSMEEAYGIFPNIEHFSCL 447
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLL RAG L +AEE+++ +P I +LLSAC + + +G+ +A ++KL +
Sbjct: 448 IDLLGRAGRLQEAEEYMEKLPFGHDPIILGSLLSACRLHGDMVIGEHLATQLLKLQPVTT 507
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA + W VAEA + +K +K+PG+S+ID+
Sbjct: 508 SPYVLLSNLYASDEMWGGVAEAWKMLKYSGLKKEPGHSLIDV 549
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 159/340 (46%), Gaps = 36/340 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LHA KT + SDI V N +I+ Y + AR +FD+M R++ SW+ ++S Y+
Sbjct: 22 GLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDRNLVSWSAIISGYDQ 81
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L LF Q+ IV ++ + SACA L L G VH + K+G + +
Sbjct: 82 TGQPLLALNLFSQM---RIVPNEYVFASVISACASLTALSQGLQVHAQSLKLGCVSVSFV 138
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC +AL + + M S N VS N LI G+
Sbjct: 139 SNALISMYMKCGLCTDALLVHNVM-SEPNAVSYNALIAGF-------------------- 177
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V+ +QPE+ +E FK M +G PD +L C+S + G +H
Sbjct: 178 -----------VENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHC 226
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+++ N+ AF+ +I MYSK +EEA F KD+++W T++
Sbjct: 227 QMIKLNLEDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDHER 286
Query: 302 ALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
ALRVF M + +KP++ TF VLAAC I G Q+
Sbjct: 287 ALRVFRDMLDVCFVKPDDFTFAGVLAACAGLASIRHGKQI 326
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 149/328 (45%), Gaps = 41/328 (12%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L CA+++ +G ++H A K G+ + + N ++ +Y+KC
Sbjct: 9 LLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGN--------------- 53
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
V AR +FDE+ D+++V W +++ G + QP AL LF +M
Sbjct: 54 -----------------VIFARRMFDEMSDRNLVSWSAIISGYDQTGQPLLALNLFSQM- 95
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+ P+E V SV+SAC+SL+ L G VH L+ +FV ALI MY KCG
Sbjct: 96 --RIVPNEYVFASVISACASLTALSQGLQVHAQSLKLGCVSVSFVSNALISMYMKCGLCT 153
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+AL+ + V++ +I G + + F M +KG P+ TF +L C
Sbjct: 154 DALLVHNVMSEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICT 213
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
G QL +M ++ F+ ++ + S+ L+ +AE+ ++ +D I
Sbjct: 214 SYDDFWRGMQLHCQM---IKLNLEDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEKD-LI 269
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKL 415
S+ L++AC + + +V +M+ +
Sbjct: 270 SWNTLVTACCFCKDHERALRVFRDMLDV 297
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 97/201 (48%), Gaps = 9/201 (4%)
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
E + S+L C+ + +G +H L+ + D V +I++YSKCG++ A F +
Sbjct: 4 EAIGSLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDE 63
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+++V+W+ +I G G AL +F QM I PNE F SV++AC +++G
Sbjct: 64 MSDRNLVSWSAIISGYDQTGQPLLALNLFSQMR---IVPNEYVFASVISACASLTALSQG 120
Query: 338 CQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
Q+ + + V + FV L+ + + GL A +M +E +SY AL++
Sbjct: 121 LQVHAQSLKLGCVSVS---FVSNALISMYMKCGLCTDALLVHNVM-SEPNAVSYNALIAG 176
Query: 396 CITYSEFDLGKKVANNMMKLG 416
+ + + G + M + G
Sbjct: 177 FVENQQPEKGIEAFKVMRQKG 197
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 150/471 (31%), Positives = 244/471 (51%), Gaps = 42/471 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMAL---FTDARVLFDKMPFRDVGSWNTLMS 57
+G+ H V K+ LD D+ VG SL+ Y + DAR +FD+MP +V SW +++
Sbjct: 163 LGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIIT 222
Query: 58 IYNDFSDSG----EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV 113
Y SG E + LF +++ + + T + ACA L + G+ V+ K+
Sbjct: 223 GY---VQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKM 279
Query: 114 GLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
L + + N+L+ MY++C M+ A R+
Sbjct: 280 RLASINCVGNSLISMYSRCGNMENA--------------------------------RKA 307
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
FD + +K++V + ++++ K+ EEA ELF ++ G + S+LS SS+ +
Sbjct: 308 FDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAI 367
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
G +H IL++ + + ALI MYS+CG++E A F + +V++WT+MI G
Sbjct: 368 GKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGF 427
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A +G AL F++M G+ PNE T+++VL+AC H GLI+EG + F+ M + + P
Sbjct: 428 AKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPR 487
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
+EH+ C+VDLL R+G L +A E + MP + + + L AC + DLGK A ++
Sbjct: 488 MEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMIL 547
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ AY+LLSN +A G W EVAE R+ MKE K+ G S I++++
Sbjct: 548 EQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVEN 598
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/472 (25%), Positives = 216/472 (45%), Gaps = 47/472 (9%)
Query: 1 MGKGLHAHVTKTA-LDSDIYVGNSLIHFYGR-MALFTDARVLFDKMPFRDVGSWNTLMSI 58
+GK + + KT +SD+ VG +LI + + A +FD+MP R+V +W +++
Sbjct: 60 LGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITR 119
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ S + + LF ++ G V D+ TL + SACA + L G+ HC K GL+
Sbjct: 120 FQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLD 179
Query: 119 LNMENALLLMYAKC---KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ + +L+ MYAKC +D+A ++FD M N++S +I GY+
Sbjct: 180 VCVGCSLVDMYAKCVADGSVDDARKVFDRM-PVHNVMSWTAIITGYVQSG---------- 228
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
GC + EA+ELF +M+ V P+ SVL AC++LS++
Sbjct: 229 ---------------GCDR-----EAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWL 268
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G V+ +++ + V +LI MYS+CG++E A F K++V++ T++ A
Sbjct: 269 GEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAK 328
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
EA +F ++E G N TF S+L+ G I +G Q+ R + +
Sbjct: 329 SLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSR---ILKSGFKSN 385
Query: 356 HFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
+C L+ + SR G + A + M + IS+ ++++ + + + M+
Sbjct: 386 LHICNALISMYSRCGNIEAAFQVFNEM-GDGNVISWTSMITGFAKHGFATRALETFHKML 444
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+ G +E + A+ + V +K ++ K + ++HY
Sbjct: 445 EAGVSPNEV-----TYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHY 491
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/360 (25%), Positives = 168/360 (46%), Gaps = 50/360 (13%)
Query: 47 RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV 106
RD+ SW+ L+S Y + + E + F ++ G ++ +F AC+ E + GK +
Sbjct: 5 RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64
Query: 107 HCYATKVG-LEYMLNMENALLLMYAKCK-EMDEALRLFDEMGSRRNIVSLNILINGYIDM 164
+ K G E + + AL+ M+ K +++ A ++FD M
Sbjct: 65 FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRM------------------- 105
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
D+++V W M+ + +A++LF M+ G PD + V+
Sbjct: 106 -------------PDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVV 152
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC---GSLEEALVTFYKTDCK 281
SAC+ + L GR H ++++ + D V +L+DMY+KC GS+++A F +
Sbjct: 153 SACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVH 212
Query: 282 DVVTWTTMIEG-LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
+V++WT +I G + + G EA+ +F +M + +KPN TF SVL AC + I G Q+
Sbjct: 213 NVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQV 272
Query: 341 FR-----RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ R+ + V + L+ + SR G + A + ++ E +SY +++A
Sbjct: 273 YALVVKMRLASINCVGNS------LISMYSRCGNMENARKAFDVL-FEKNLVSYNTIVNA 325
>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 150/459 (32%), Positives = 243/459 (52%), Gaps = 33/459 (7%)
Query: 4 GLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFS 63
+HA V K+ SD ++G+ L+ Y ++ DA+ LFD+MP +D+ SWN+LMS +
Sbjct: 83 AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRG 142
Query: 64 DSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
G L F ++ E G +++TL+ + SACA + L GK++H K+G+ +
Sbjct: 143 YLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVV 202
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N+L+ MY K + +D A ++F+E+ + +
Sbjct: 203 NSLINMYGK--------------------------------LGFLDAASQLFEEMPVRSL 230
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W SM+ E+ ++LF M G+ PD+ MV++L AC+ + +H +
Sbjct: 231 VSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAY 290
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
I + D + TAL+++Y+K G L + F + +D + WT M+ G A + G EA
Sbjct: 291 IHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREA 350
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
+++F M ++G++ + TF +L+AC HSGL+ EG + F M VYRV+P ++H+ C+VD
Sbjct: 351 IKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVD 410
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL R+G L A E IK MP E + ALL AC Y +LGK+VA ++ L H
Sbjct: 411 LLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRN 470
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
Y++LSN Y+ G W + ++ R MKE + + PG S I+
Sbjct: 471 YIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIE 509
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 90/380 (23%), Positives = 158/380 (41%), Gaps = 69/380 (18%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH V K + V NSLI+ YG++ A LF++MP R + SWN+++ I+N
Sbjct: 183 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 242
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + + LF + GI D+ T+V L AC +++H Y + G + +
Sbjct: 243 NGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIII 302
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ALL +YAK ++ + ++F+EI D+D
Sbjct: 303 ATALLNLYAKLGRLNA--------------------------------SEDIFEEIKDRD 330
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W +M+ G EA++LF M+ EGV D +LSACS ++ G+
Sbjct: 331 RIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYF- 389
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I + + +D YS M++ L G +
Sbjct: 390 -----EIMSEVYRVEPRLDHYS------------------------CMVDLLGRSGRLED 420
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCL 360
A + M ++P+ + ++L ACR G + G ++ ++ + P+ +++ L
Sbjct: 421 AYELIKSMP---MEPSSGVWGALLGACRVYGNVELGKEVAEQL---LSLDPSDHRNYIML 474
Query: 361 VDLLSRAGLLYQAEEFIKIM 380
++ S AGL A + +M
Sbjct: 475 SNIYSAAGLWRDASKVRALM 494
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 7/178 (3%)
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
++ S++ A SS +++ Y +H ++++ D F+ L+ MY K G E+A F +
Sbjct: 64 IVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 123
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQME-RKGIKPNEATFVSVLAACRHSGLITEG 337
KD+V+W +++ GL+ G L F +M G +PNE T +SV++AC G + EG
Sbjct: 124 PNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEG 183
Query: 338 CQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
L G V ++ + + V L+++ + G L A + + MP +S+ +++
Sbjct: 184 KSLH---GVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMV 237
>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like, partial [Cucumis sativus]
Length = 472
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 244/463 (52%), Gaps = 37/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HAH+ K+ SDI++ NSL+HFY + A ++FD +P DV SW +++S +
Sbjct: 37 GLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSWTSIISGLSK 96
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L F + + + TLV S C+ L L GK +H + E + +
Sbjct: 97 LGFEKEALSKFLSM---NVRPNSTTLVTALSTCSSLRCLKLGKAIHGLRMRTLNEENVIL 153
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENALL Y +C + A +F+++ +D
Sbjct: 154 ENALLDFYVRCAYLRSA--------------------------------ENLFEKMPKRD 181
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V W +M+ G ++ EEA+ +F+ M+ G P+E +V+VLSACSS+S L G+ VH
Sbjct: 182 VVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVH 241
Query: 241 RFI-LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
+I ++++ D V ALI+MY KCG++E A++ F T+ KD+V+W+T+I GLA GLG
Sbjct: 242 SYINSRHDVIIDGNVGNALINMYVKCGNMEMAILIFKATEHKDIVSWSTIISGLAMNGLG 301
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+A +F M GI P++ TF+ +L+AC H GLI +G +F M VY + P + H+ C
Sbjct: 302 KQAFVLFSLMLVHGISPDDVTFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYAC 361
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VD+ +AGLL +AE FIK MP E + + ALL AC + +KV ++ +
Sbjct: 362 MVDMYGKAGLLDEAEAFIKEMPMEAEGPVWGALLHACQLHGNEKKYEKVREWLLGSKGVT 421
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ LLSN YA W + + R M+ +K G S I++
Sbjct: 422 VGTFALLSNTYACCDRWNDANDVRVAMRSRGLKKMAGRSWIEM 464
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 131/274 (47%), Gaps = 35/274 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H +T + ++ + N+L+ FY R A A LF+KMP RDV SW T++ Y
Sbjct: 134 LGKAIHGLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYA 193
Query: 61 DFSDSGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYA-TKVGLEYM 118
E + +F+ ++ G + ++ TLV + SAC+ + LH G+ VH Y ++ +
Sbjct: 194 QSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIID 253
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
N+ NAL+ MY KC M+ A+ +F A E
Sbjct: 254 GNVGNALINMYVKCGNMEMAILIFK--------------------------ATE------ 281
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
KDIV W +++ G ++A LF M+ G++PD+ + +LSACS + G +
Sbjct: 282 HKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGISPDDVTFLGLLSACSHGGLINQGMM 341
Query: 239 VHRFILQ-NNITQDAFVKTALIDMYSKCGSLEEA 271
V + NI+ ++DMY K G L+EA
Sbjct: 342 VFEAMKDVYNISPQMRHYACMVDMYGKAGLLDEA 375
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 7/194 (3%)
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
L AC L Q G +H ++++ D F++ +L+ Y G + A + F DV
Sbjct: 25 LKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDV 84
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR- 342
V+WT++I GL+ G EAL F M ++PN T V+ L+ C + G +
Sbjct: 85 VSWTSIISGLSKLGFEKEALSKFLSMN---VRPNSTTLVTALSTCSSLRCLKLGKAIHGL 141
Query: 343 RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
RM + +E+ L+D R L AE + MP D +S+ ++
Sbjct: 142 RMRTLNEENVILEN--ALLDFYVRCAYLRSAENLFEKMPKRD-VVSWTTMIGGYAQSGLC 198
Query: 403 DLGKKVANNMMKLG 416
+ +V NM+ +G
Sbjct: 199 EEAVRVFQNMVHVG 212
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 158/447 (35%), Positives = 241/447 (53%), Gaps = 40/447 (8%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ ++I Y + +AR LFD+MP R+V SW T++S Y +G+V + K
Sbjct: 170 DVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGY---VQNGQVDVARK--- 223
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
LF ++ + A+L+ Y + ++
Sbjct: 224 -------------LFEVMPEKNEVSW--------------------TAMLMGYTQGGRIE 250
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
EA LFD M + +V+ N +I G+ V AR+VFD+I +KD W +M+ +
Sbjct: 251 EASELFDAM-PVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKG 309
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
EAL LF M EGV + ++SVLS C+SL++L +GR VH ++++ D FV +
Sbjct: 310 FEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVAS 369
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
LI MY KCG L +A F + KD+V W ++I G A +GL EAL+VF++M G+
Sbjct: 370 VLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMAT 429
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
+ TFV VL+AC ++G + EG ++F M Y V+P EH+ C+VDLL RAGL+ A +
Sbjct: 430 DGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDL 489
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436
I+ MP E I + ALL AC T+ +L + A +++L ++ Y+LLSN YA +G W
Sbjct: 490 IQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRW 549
Query: 437 TEVAEARRNMKELQTRKKPGNSIIDLK 463
+VAE RRNM+ + K PG S I+++
Sbjct: 550 GDVAELRRNMRVKKVSKSPGCSWIEVE 576
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 142/319 (44%), Gaps = 48/319 (15%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N LI Y + + ++AR FD MP R+V SW ++ Y E LF Q+ + +V
Sbjct: 82 NGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVV 141
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
+ ++ ++ ++ + + + NM + Y + + EA L
Sbjct: 142 ----SWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISG----YCQEGRLAEAREL 193
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
FDEM RRN++S +I+GY+ VD+AR++F+ + +K+ V W +M+ G + + EEA
Sbjct: 194 FDEM-PRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEA 252
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
ELF M V + AC+ A+I
Sbjct: 253 SELFDAMP-----------VKAVVACN----------------------------AMILG 273
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
+ + G + +A F + KD TW+ MI+ G EAL +F M+R+G++ N +
Sbjct: 274 FGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSL 333
Query: 322 VSVLAACRHSGLITEGCQL 340
+SVL+ C + G Q+
Sbjct: 334 ISVLSVCASLASLDHGRQV 352
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 150/358 (41%), Gaps = 62/358 (17%)
Query: 109 YATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168
Y T V + Y N+ + YA+ +++ A R+FDEM + IVS N ++ GY
Sbjct: 11 YCTSVAIAY-----NSQIARYARIGQIESARRVFDEMPDK-GIVSWNSMVAGYFQNNRPR 64
Query: 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM---------------IDEGV 213
AR +FD++ +++ V W ++ G VK + EA + F M + EG+
Sbjct: 65 EARYLFDKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGL 124
Query: 214 TPDEEVMV------SVLSACSSLSNLQYGRLVH--RFILQNNITQDAFVKTALIDMYSKC 265
+ E + +V+S L L R + R + +D +T +I Y +
Sbjct: 125 VSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQE 184
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G L EA F + ++V++WTTMI G G + A ++F M K NE ++ ++L
Sbjct: 185 GRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK----NEVSWTAML 240
Query: 326 AACRHSGLITEGCQLFRRM------------------GGVYRVQPTIEH--------FVC 359
G I E +LF M G V + + + +
Sbjct: 241 MGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSA 300
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAE---DKFISYKALLSACITYSEFDLGKKVANNMMK 414
++ + R G +A +M E F S ++LS C + + D G++V ++K
Sbjct: 301 MIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVK 358
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA + K+ DSD++V + LI Y + AR +FD+ +D+ WN++++ Y
Sbjct: 349 GRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQ 408
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG 103
E L +F ++ G+ D +T V + SAC+ K+ G
Sbjct: 409 HGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEG 450
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 164/503 (32%), Positives = 257/503 (51%), Gaps = 44/503 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFD--KMPFRDVGSWNTLMS 57
K LH +TK LD L++ +A AR F+ K R + L S
Sbjct: 42 KQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNS 101
Query: 58 IYNDFSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG 114
+ +S +G E ++L+ +++ G+ + T + S C ++ G VH K+G
Sbjct: 102 LIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMG 161
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY------------- 161
LE + ++N L+ YA+C MD ++F+ M S RN+VS LI GY
Sbjct: 162 LEEDVFIQNCLIHFYAECGHMDHGHKVFEGM-SERNVVSWTSLICGYARGDRPKEAVSLF 220
Query: 162 ------------IDMEL----VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
+DM + +D A+ +FDE VD+++VL+ +++ + EAL +
Sbjct: 221 FEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAIL 280
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL-----VHRFILQNNITQDAFVKTALID 260
+M+ +G PD M+S +SA + L +L YG++ VH +I +N I D + TAL+D
Sbjct: 281 DEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVD 340
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
M+++CG + A+ F K +DV WT I +A G G A +F QM +G+KP+
Sbjct: 341 MFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVL 400
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
FV VL AC H G + +G +F M + + P IEH+ C+VDLL RAGLL +A + IK M
Sbjct: 401 FVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSM 459
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440
P E + + +LL+AC + ++ A + +L Q +VLLSN YA G WT+VA
Sbjct: 460 PMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVA 519
Query: 441 EARRNMKELQTRKKPGNSIIDLK 463
R N++E RK PG+S + +
Sbjct: 520 RVRLNLREKGVRKVPGSSSVQVN 542
>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Vitis vinifera]
Length = 694
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 150/458 (32%), Positives = 243/458 (53%), Gaps = 33/458 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA V K+ SD ++G+ L+ Y ++ DA+ LFD+MP +D+ SWN+LMS +
Sbjct: 141 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGY 200
Query: 65 SGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
G L F ++ E G +++TL+ + SACA + L GK++H K+G+ + N
Sbjct: 201 LGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVN 260
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
+L+ MY K + +D A ++F+E+ + +V
Sbjct: 261 SLINMYGK--------------------------------LGFLDAASQLFEEMPVRSLV 288
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W SM+ E+ ++LF M G+ PD+ MV++L AC+ + +H +I
Sbjct: 289 SWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYI 348
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ D + TAL+++Y+K G L + F + +D + WT M+ G A + G EA+
Sbjct: 349 HRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAI 408
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
++F M ++G++ + TF +L+AC HSGL+ EG + F M VYRV+P ++H+ C+VDL
Sbjct: 409 KLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDL 468
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L R+G L A E IK MP E + ALL AC Y +LGK+VA ++ L H Y
Sbjct: 469 LGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNY 528
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
++LSN Y+ G W + ++ R MKE + + PG S I+
Sbjct: 529 IMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIE 566
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/380 (23%), Positives = 158/380 (41%), Gaps = 69/380 (18%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH V K + V NSLI+ YG++ A LF++MP R + SWN+++ I+N
Sbjct: 240 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 299
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + + LF + GI D+ T+V L AC +++H Y + G + +
Sbjct: 300 NGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIII 359
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ALL +YAK ++ + ++F+EI D+D
Sbjct: 360 ATALLNLYAKLGRLNA--------------------------------SEDIFEEIKDRD 387
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W +M+ G EA++LF M+ EGV D +LSACS ++ G+
Sbjct: 388 RIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYF- 446
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I + + +D YS M++ L G +
Sbjct: 447 -----EIMSEVYRVEPRLDHYS------------------------CMVDLLGRSGRLED 477
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI-EHFVCL 360
A + M ++P+ + ++L ACR G + G ++ ++ + P+ +++ L
Sbjct: 478 AYELIKSMP---MEPSSGVWGALLGACRVYGNVELGKEVAEQL---LSLDPSDHRNYIML 531
Query: 361 VDLLSRAGLLYQAEEFIKIM 380
++ S AGL A + +M
Sbjct: 532 SNIYSAAGLWRDASKVRALM 551
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 7/178 (3%)
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
++ S++ A SS +++ Y +H ++++ D F+ L+ MY K G E+A F +
Sbjct: 121 IVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 180
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQME-RKGIKPNEATFVSVLAACRHSGLITEG 337
KD+V+W +++ GL+ G L F +M G +PNE T +SV++AC G + EG
Sbjct: 181 PNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEG 240
Query: 338 CQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
L G V ++ + + V L+++ + G L A + + MP +S+ +++
Sbjct: 241 KSLH---GVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMV 294
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 152/468 (32%), Positives = 255/468 (54%), Gaps = 41/468 (8%)
Query: 3 KGLHAHVTKTALD-SDIYVGNSLIHFYGRMA---LFTDARVLFDKM--PFRDVGSWNTLM 56
+ +HA + + SD +G LI + + + A +F K+ P +V WNTL+
Sbjct: 34 RQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPI-NVFIWNTLI 92
Query: 57 SIYNDFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
Y + +S + L++++ G V D T L A ++ + G+T+H + G
Sbjct: 93 RGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGF 152
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
++ ++N+LL +YA C ++ A + VFD
Sbjct: 153 GSLIYVQNSLLHLYANCGDVASAYK--------------------------------VFD 180
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
++ +KD+V W S+++G + +PEEAL L+ +M +G+ PD +VS+LSAC+ + L
Sbjct: 181 KMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTL 240
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G+ H ++++ +T++ L+D+Y++CG +EEA F + K+ V+WT++I GLA
Sbjct: 241 GKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300
Query: 296 YGLGNEALRVFYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
GLG EA+ +F ME K G+ P E TFV +L AC H G++ EG + FRRM Y+++P I
Sbjct: 301 NGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRI 360
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
EHF C+VDLL+RAG + +A E+I MP + + ++ LL AC + + DL + +++
Sbjct: 361 EHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQ 420
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
L YVLLSN YA E W++V + R+ M RK PG+S++++
Sbjct: 421 LEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEV 468
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 159/329 (48%), Gaps = 51/329 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ V ++ S IYV NSL+H Y A +FDKMP +D+ +WN S+ N
Sbjct: 139 LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN---SVIN 195
Query: 61 DFSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
F+++G E L L+ ++ +GI D T+V L SACA++ L GK H Y KVGL
Sbjct: 196 GFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTR 255
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L+ N LL +YA+C ++EA LFDEM
Sbjct: 256 NLHSSNVLLDLYARCGRVEEAKTLFDEM-------------------------------- 283
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYG 236
VDK+ V W S++ G +EA+ELFK M EG+ P E V +L ACS ++ G
Sbjct: 284 VDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEG 343
Query: 237 -----RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMI 290
R+ + ++ I ++D+ ++ G +++A K + +VV W T++
Sbjct: 344 FEYFRRMSEEYKIEPRIEHFG----CMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLL 399
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEA 319
+ G+ L +M+ ++PN +
Sbjct: 400 GACTVH--GDSDLAELARMKILQLEPNHS 426
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 154/449 (34%), Positives = 245/449 (54%), Gaps = 22/449 (4%)
Query: 22 NSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
N+++ Y + F +AR LFD MP +D+ SWN++++ Y + L F+++ +V
Sbjct: 31 NAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVV 90
Query: 82 ADK------ITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135
+ + + L S+ EK+ TV G +A+ ++
Sbjct: 91 SWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCG--------------FARFGKI 136
Query: 136 DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195
EA RLFD+M RN+V+ N +I Y+ VD A +F E+ +K+ + W ++++G V+
Sbjct: 137 AEARRLFDQM-PIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRM 195
Query: 196 KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK 255
+ +EA +L +M PD+ LS+C+ L+ LQ G+ +H+ ++++ D FV
Sbjct: 196 GKLDEARQLLNQMPYRN-KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVS 254
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
ALI MY+KCGS+ A + F D DVV+W ++I A G G EAL++F++ME +G+
Sbjct: 255 NALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVA 314
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
P+E TFV +L+AC H GLI +G +LF+ M Y ++P EH+ C+VDLL RAG L +A +
Sbjct: 315 PDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQ 374
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
++ M + ALL AC + +L K A +++ YVLLSN A G
Sbjct: 375 LVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGR 434
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDLKH 464
W EVA RR MKE K+PG S I+L++
Sbjct: 435 WDEVARVRRLMKEKGAEKQPGWSWIELQN 463
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 134/301 (44%), Gaps = 40/301 (13%)
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
++ Y + E+ +A LF+ + + N V N ++ GY D AR +FD + KD+V
Sbjct: 1 MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVS 60
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVT-------------------------PDEEV 219
W SM+ G + + L+ F++M + V P+
Sbjct: 61 WNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNT 120
Query: 220 MVSVLSACSSLSNLQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
+ V C ++G++ R + ++ A+I Y + ++EA+ F +
Sbjct: 121 VSWVTMLCGF---ARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEM 177
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338
K+ ++WTT+I G G +EA ++ QM + KP+++TF L++C H + G
Sbjct: 178 PEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTFACGLSSCAHLAALQVGK 236
Query: 339 QLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKF--ISYKALLS 394
QL + V + + FV L+ + ++ G + AE K + D F +S+ +L++
Sbjct: 237 QLHQL---VMKSGYATDLFVSNALITMYAKCGSISSAELLFKDI---DHFDVVSWNSLIA 290
Query: 395 A 395
A
Sbjct: 291 A 291
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 4/176 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH V K+ +D++V N+LI Y + + A +LF + DV SWN+L++ Y
Sbjct: 234 VGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYA 293
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
+ E L LF ++ EG+ D++T V + SAC+ + + G K C +E +
Sbjct: 294 LNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLA 353
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLARE 172
++ + + ++EA +L M N L+ + ++EL A E
Sbjct: 354 EHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAE 409
>gi|56201767|dbj|BAD73217.1| hypothetical protein [Oryza sativa Japonica Group]
gi|56201874|dbj|BAD73324.1| hypothetical protein [Oryza sativa Japonica Group]
gi|125569384|gb|EAZ10899.1| hypothetical protein OsJ_00742 [Oryza sativa Japonica Group]
Length = 569
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 156/503 (31%), Positives = 255/503 (50%), Gaps = 46/503 (9%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLMSIYNDFS 63
+HAH L + V ++ Y R+ DAR +FD MP R WN L+S Y+
Sbjct: 30 VHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSSGC 89
Query: 64 DS-----------------------------------GEVLILFKQLIFEGIVADKITLV 88
D +VL LF ++ G + ++
Sbjct: 90 DPDAARDAFARMAAAGARPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMA 149
Query: 89 ILFSAC--ARLEKLHYGKTVH-CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
+ SAC A L GK +H C K + L + N+L+ MY K EMD+A + F +
Sbjct: 150 VALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRD- 208
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEI------VDKDIVLWRSMMHGCVKAKQPE 199
+ +N V+ N LI Y L D A +V ++ V ++V W +++ G + +
Sbjct: 209 ATAKNTVTWNTLITSYAAARLCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTD 268
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
ALELF++M + ++P+ M +VLSAC L L+ GR +H ++ + + + V+ LI
Sbjct: 269 RALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLI 328
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
+MY+KCG + A F +D+++W +M+ G +GL +EAL +F M ++P+
Sbjct: 329 NMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGV 388
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
TFV+VL+AC H+G +TEG +LF RM +++ P++EH+ C+V LL RAGLL A E ++
Sbjct: 389 TFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVET 448
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
MP + ALL++C + + + + N+++ +QS ++L++N YA+ G W E
Sbjct: 449 MPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMCGMWDES 508
Query: 440 AEARRNMKELQTRKKPGNSIIDL 462
+ R KE RK PG S I++
Sbjct: 509 KKVRVMTKEAGLRKNPGQSWIEV 531
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 131/309 (42%), Gaps = 71/309 (22%)
Query: 2 GKGLHA-HVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
GK +H V K + ++V NSLI YG++ DA+ F ++ +WNTL++ Y
Sbjct: 166 GKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYA 225
Query: 60 ---------------------------------NDFSDSGE---VLILFKQLIFEGIVAD 83
F+ SG+ L LF+++ + + +
Sbjct: 226 AARLCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPN 285
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
+T+ + SAC L L G+ +H +A K L+ +EN L+ MYAKC ++ A ++FD
Sbjct: 286 VVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFD 345
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
M + R+++S N ++ GY MHG +EAL
Sbjct: 346 GMKT-RDLISWNSMLAGY--------------------------GMHGLC-----DEALA 373
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMY 262
LF M V PD V+VLSAC + G RL R + + I+ T ++ +
Sbjct: 374 LFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLL 433
Query: 263 SKCGSLEEA 271
+ G L +A
Sbjct: 434 GRAGLLRDA 442
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH H K LD V N LI+ Y + + AR +FD M RD+ SWN++++ Y
Sbjct: 304 LGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYG 363
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
E L LF + + D +T V + SAC ++ G+
Sbjct: 364 MHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGR 407
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 256/462 (55%), Gaps = 7/462 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HA+ + LD ++ L+ ++ A LFD++P V +N + ++
Sbjct: 5 KQIHAYSLRNGLDHTKFLIEKLL----QLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+L+ Q+ +G ++ + LF ACA L ++ G+ +H + K G +
Sbjct: 61 GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAM 120
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
ALL MYAK + A +LFDEM R+I + N LI GY ++ A E+F+++ +++
Sbjct: 121 TALLDMYAKLGMLRSARQLFDEM-PVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNV 179
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W +++ G + + +ALE+F + +E G P+E + SVL ACS L L G+ +
Sbjct: 180 ISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEA 239
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGN 300
+ N ++A+V A+++++++CG++EEA F + K ++ +W TMI GLA +G
Sbjct: 240 YARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCI 299
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL+++ QM + ++P++ TFV +L AC H G++ EG QLF M ++V P +EH+ CL
Sbjct: 300 DALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCL 359
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +A I+ MP + + LL AC + +LG+ A ++ KL +
Sbjct: 360 VDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNP 419
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YV+LSN YAL G W+ VA R+ MK K+ G S I++
Sbjct: 420 GNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEV 461
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 151/347 (43%), Gaps = 70/347 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH+H K+ SD++ +L+ Y ++ + AR LFD+MP RD+ +WN+L++ Y
Sbjct: 101 GQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYAR 160
Query: 62 FSDSGEVLILFKQLIFEGIVA--------------------------------DKITLVI 89
L LF ++ +++ +++++
Sbjct: 161 SGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIAS 220
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ AC++L L GK + YA G + NA+L ++A+C ++EA ++FDE+GS+R
Sbjct: 221 VLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKR 280
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHG-CVKAKQPEEALELFKKM 208
N+ S N +I G +HG C+ +AL+L+ +M
Sbjct: 281 NLCSWNTMIMGL--------------------------AVHGRCI------DALQLYDQM 308
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGS 267
+ + PD+ V +L AC+ + GR L + + L+D+ + G
Sbjct: 309 LIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGE 368
Query: 268 LEEALVTFYKTD-CKDVVTWTTMIEGLANYG---LGNEALRVFYQME 310
L+EA D V W T++ + +G LG A +++E
Sbjct: 369 LQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLE 415
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 5/177 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKM-PFRDVGSWNTLMSIY 59
+GK + A+ + YV N+++ + R +A+ +FD++ R++ SWNT++
Sbjct: 233 IGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGL 292
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYM 118
+ L L+ Q++ + D +T V L AC + G+ + +K +
Sbjct: 293 AVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPK 352
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLARE 172
L L+ + + E+ EA L M + V L+ + ++EL ++A E
Sbjct: 353 LEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAE 409
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 254/467 (54%), Gaps = 6/467 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRM--ALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K +HAH+ + L YV LI ++ + + ++F ++ + + W ++ Y
Sbjct: 59 KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYML 119
E + ++ +G+ T LF AC + GK VH +G L
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDL 178
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ N+++ +Y KC + A ++FDEM S R++VS LI Y ++ A +FD++
Sbjct: 179 YVGNSMIDLYVKCGFLGCARKVFDEM-SERDVVSWTELIVAYAKYGDMESASGLFDDLPL 237
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KD+V W +M+ G + +P+EALE F+KM D G+ DE + V+SAC+ L +++ +
Sbjct: 238 KDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWI 297
Query: 240 HRFILQNNI--TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
++ + + V +ALIDMYSKCGS +EA F ++V ++++MI G A +G
Sbjct: 298 RDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG 357
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+ AL++F+ M + I+PN+ TF+ +L+AC H+GL+ +G QLF +M + V P+ +H+
Sbjct: 358 RAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHY 417
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RAG L +A + +K MP E + ALL AC + D+ + AN + KL
Sbjct: 418 ACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEP 477
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
Y+LLSN YA G W EV++ R+ ++E +K PG S + K+
Sbjct: 478 NGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKN 524
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 159/494 (32%), Positives = 258/494 (52%), Gaps = 65/494 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY---GRM--------------------------- 31
G+ +H HV K D D+YV SLI Y GR+
Sbjct: 153 GQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYAS 212
Query: 32 -ALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+A+ LFD++P +DV SWN ++S Y + + E L LFK ++ + D+ T+V +
Sbjct: 213 RGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTV 272
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+ + G+ VH + G L + NAL+ +Y+KC E++ A LF+ +
Sbjct: 273 VSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY--- 329
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
KD++ W +++ G +EAL LF++M+
Sbjct: 330 -----------------------------KDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ--NNITQDAFVKTALIDMYSKCGSL 268
G TP++ M+S+L AC+ L + GR +H +I + +T + ++T+LIDMY+KCG +
Sbjct: 361 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDI 420
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E A F K + +W MI G A +G + + +F +M + GI+P++ TFV +L+AC
Sbjct: 421 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSAC 480
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
HSG++ G +FR M Y++ P +EH+ C++DLL +GL +AEE I +M E +
Sbjct: 481 SHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVI 540
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+ +LL AC + +LG+ A N++K+ ++ +YVLLSN YA G W EVA+ R + +
Sbjct: 541 WCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLND 600
Query: 449 LQTRKKPGNSIIDL 462
+K PG S I++
Sbjct: 601 KGMKKVPGCSSIEI 614
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 215/423 (50%), Gaps = 14/423 (3%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIYND 61
+HA + K L + Y + LI F F A +F + ++ WNT+ +
Sbjct: 52 IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHAL 111
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
SD L L+ +I G++ + T + +CA+ + G+ +H + K+G + L +
Sbjct: 112 SSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYV 171
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MY + +++A ++FD+ R++VS LI GY ++ A+++FDEI KD
Sbjct: 172 HTSLISMYVQNGRLEDAHKVFDK-SPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKD 230
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ G + +EALELFK M+ V PDE MV+V+SAC+ +++ GR VH
Sbjct: 231 VVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHL 290
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I + + + ALID+YSKCG LE A F + KDV++W T+I G + L E
Sbjct: 291 WIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKE 350
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF----RRMGGVYRVQPTIEHF 357
AL +F +M R G PN+ T +S+L AC H G I G + +R+ GV
Sbjct: 351 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL---R 407
Query: 358 VCLVDLLSRAGLLYQAEE-FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L+D+ ++ G + A + F I+ S+ A++ + D + + M K+G
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSIL--HKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG 465
Query: 417 NQS 419
Q
Sbjct: 466 IQP 468
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 137/301 (45%), Gaps = 36/301 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + S++ + N+LI Y + A LF+++P++DV SWNTL+ Y
Sbjct: 284 LGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYT 343
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYM 118
+ E L+LF++++ G + +T++ + ACA L + G+ +H Y K G+
Sbjct: 344 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNA 403
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ +L+ MYAKC +++ A +VF+ I+
Sbjct: 404 SSLRTSLIDMYAKCGDIEA--------------------------------AHQVFNSIL 431
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K + W +M+ G + + + +LF +M G+ PD+ V +LSACS L GR
Sbjct: 432 HKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRH 491
Query: 239 VHRFILQN-NITQDAFVKTALIDMYSKCGSLE-EALVTFYKTDCKDVVTWTTMIEGLANY 296
+ R + Q+ +T +ID+ G + + D V W ++++ +
Sbjct: 492 IFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMH 551
Query: 297 G 297
G
Sbjct: 552 G 552
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 158/338 (46%), Gaps = 46/338 (13%)
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
E + A VF I + ++++W +M G + P AL+L+ MI G+ P+ VL
Sbjct: 82 EGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVL 141
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
+C+ + G+ +H +L+ D +V T+LI MY + G LE+A F K+ +DVV
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVV 201
Query: 285 TWTTMIEGLANYG-----------------------------LGN--EALRVFYQMERKG 313
++T +I+G A+ G GN EAL +F M +
Sbjct: 202 SYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN 261
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
++P+E+T V+V++AC SG I G Q+ + + ++ L+DL S+ G L A
Sbjct: 262 VRPDESTMVTVVSACAQSGSIELGRQVHLWIDD-HGFGSNLKIVNALIDLYSKCGELETA 320
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKK---VANNMMKLGNQSHEAYVL----- 425
+ +P +D IS+ L+ Y+ +L K+ + M++ G ++ +L
Sbjct: 321 CGLFERLPYKD-VISWNTLIGG---YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 376
Query: 426 LSNFYALE-GHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ A++ G W V +R +K + S+ID+
Sbjct: 377 CAHLGAIDIGRWIHVYIDKR-LKGVTNASSLRTSLIDM 413
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 148/468 (31%), Positives = 250/468 (53%), Gaps = 36/468 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMAL---FTDARVLFDKMPFRDVGSWNTLMS 57
+GK LH+ V + L D+ VG SL+ Y + A D+R +F++MP +V SW +++
Sbjct: 69 LGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIIT 128
Query: 58 IYNDFSD-SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
Y + E + LF ++I I + + + AC L + G+ V+ YA K+G+
Sbjct: 129 AYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIA 188
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + N+L+ MYA+ M++A R+ FD
Sbjct: 189 SVNCVGNSLISMYARSGRMEDA--------------------------------RKAFDI 216
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ +K++V + +++ G K + EEA LF ++ D G+ S+LS +S+ + G
Sbjct: 217 LFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKG 276
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+H +L+ + + ALI MYS+CG++E A F + + ++V++WT+MI G A +
Sbjct: 277 EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKH 336
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G AL +F++M G KPNE T+V+VL+AC H G+I+EG + F M + + P +EH
Sbjct: 337 GFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEH 396
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL R+GLL +A EFI MP + ++ LL AC + +LG+ A +++
Sbjct: 397 YACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQE 456
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
AY+LLSN +A G W +V + R++MKE K+ G S I++++
Sbjct: 457 PDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVEN 504
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 188/391 (48%), Gaps = 36/391 (9%)
Query: 34 FTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSA 93
+ A +FDKMP R++ +W +++ + + + + LF + G V D+ T + SA
Sbjct: 1 WAPAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSA 60
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
C L L GK +H ++GL + + +L+ MYAKC GS
Sbjct: 61 CTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAAD----------GS------ 104
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ-PEEALELFKKMIDEG 212
VD +R+VF+++ + +++ W +++ ++ + +EA+ELF KMI
Sbjct: 105 -------------VDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGH 151
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ P+ SVL AC +LS+ G V+ + ++ I V +LI MY++ G +E+A
Sbjct: 152 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 211
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F K++V++ +++G A EA +F ++ GI + TF S+L+ G
Sbjct: 212 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 271
Query: 333 LITEGCQLFRR-MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK-FISYK 390
+ +G Q+ R + G Y+ I + L+ + SR G + A + M ED+ IS+
Sbjct: 272 AMGKGEQIHGRLLKGGYKSNQCICN--ALISMYSRCGNIEAAFQVFNEM--EDRNVISWT 327
Query: 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
++++ + ++ + M++ G + +E
Sbjct: 328 SMITGFAKHGFATRALEMFHKMLETGTKPNE 358
>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
Length = 522
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 155/465 (33%), Positives = 243/465 (52%), Gaps = 9/465 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHF---YGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
LHA + K+ L D + + F GR L+ A L P + WNT++ +D
Sbjct: 53 LHAALVKSGLAKDPIAASRAVAFCAGPGRDVLY--AERLVRHHPRPNSFMWNTVIRALSD 110
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ + LF ++ D+ + L +A ARL + G+ +H A K+GL +
Sbjct: 111 GARPDAAVALFVDMLSSPTPPDRRSFPSLLAAYARLGRAGDGEALHGMALKLGLAGDAYV 170
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NA + MYA C DEAL LF + ++V+ N +I VD AR VFD + ++
Sbjct: 171 RNATIAMYASCGRADEALALFGQC-PELDVVACNSVIVALARAGRVDEARSVFDAMPERT 229
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W +M+ +A + EAL LF M +G+ P+ V+VSVL C+SL L G VH
Sbjct: 230 VATWSAMVSAYARAARCSEALALFSAMQADGMEPNANVLVSVLGCCASLGALVQGAWVHE 289
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV---TWTTMIEGLANYGL 298
+I ++ + +A V TAL+DMY KCGS+++A F + + +W +M++GLA +G
Sbjct: 290 YIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGLAKLSSWNSMMQGLAVHGQ 349
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EA+ +F +++ G+ P+ TF++VL A HSG+ E F M + V+P IEH+
Sbjct: 350 WREAVALFSELKSYGLSPDNVTFIAVLTAYGHSGMPDEAQAAFASMSSEHGVEPGIEHYG 409
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
CLVD L+RAG L +AE+ I+ MP + ALLS C + + +LG + A ++ +
Sbjct: 410 CLVDALARAGRLREAEDAIRAMPMAPDAAIWGALLSGCRLHGDAELGARAAREAVRCDPR 469
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AYVL ++ A G A R M+E K PG+S+I++
Sbjct: 470 DSGAYVLAASVLARGGDPGRGAGIRGRMREAGVGKVPGSSMIEVN 514
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 134/352 (38%), Gaps = 91/352 (25%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY---GR----MALFT------------------- 35
G+ LH K L D YV N+ I Y GR +ALF
Sbjct: 152 GEALHGMALKLGLAGDAYVRNATIAMYASCGRADEALALFGQCPELDVVACNSVIVALAR 211
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+AR +FD MP R V +W+ ++S Y + E L LF + +G+ + LV +
Sbjct: 212 AGRVDEARSVFDAMPERTVATWSAMVSAYARAARCSEALALFSAMQADGMEPNANVLVSV 271
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
CA L L G VH Y + G+ + AL+ MY KC +D+A ++FD S+
Sbjct: 272 LGCCASLGALVQGAWVHEYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQ-- 329
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
LA+ + W SMM G Q EA+ LF ++
Sbjct: 330 -----------------GLAK----------LSSWNSMMQGLAVHGQWREAVALFSELKS 362
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA------------- 257
G++PD ++VL+A YG H + Q AF +
Sbjct: 363 YGLSPDNVTFIAVLTA--------YG---HSGMPDE--AQAAFASMSSEHGVEPGIEHYG 409
Query: 258 -LIDMYSKCGSLEEALVTFYKTD-CKDVVTWTTMIEGLANYG---LGNEALR 304
L+D ++ G L EA D W ++ G +G LG A R
Sbjct: 410 CLVDALARAGRLREAEDAIRAMPMAPDAAIWGALLSGCRLHGDAELGARAAR 461
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 148/468 (31%), Positives = 250/468 (53%), Gaps = 36/468 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMAL---FTDARVLFDKMPFRDVGSWNTLMS 57
+GK LH+ V + L D+ VG SL+ Y + A D+R +F++MP +V SW +++
Sbjct: 74 LGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIIT 133
Query: 58 IYNDFSD-SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
Y + E + LF ++I I + + + AC L + G+ V+ YA K+G+
Sbjct: 134 AYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIA 193
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + N+L+ MYA+ M++A R+ FD
Sbjct: 194 SVNCVGNSLISMYARSGRMEDA--------------------------------RKAFDI 221
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ +K++V + +++ G K + EEA LF ++ D G+ S+LS +S+ + G
Sbjct: 222 LFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKG 281
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+H +L+ + + ALI MYS+CG++E A F + + ++V++WT+MI G A +
Sbjct: 282 EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKH 341
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G AL +F++M G KPNE T+V+VL+AC H G+I+EG + F M + + P +EH
Sbjct: 342 GFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEH 401
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL R+GLL +A EFI MP + ++ LL AC + +LG+ A +++
Sbjct: 402 YACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQE 461
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
AY+LLSN +A G W +V + R++MKE K+ G S I++++
Sbjct: 462 PDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVEN 509
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 189/392 (48%), Gaps = 36/392 (9%)
Query: 33 LFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFS 92
++ A +FDKMP R++ +W +++ + + + + LF + G V D+ T + S
Sbjct: 5 IWAPAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 64
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
AC L L GK +H ++GL + + +L+ MYAKC GS
Sbjct: 65 ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAAD----------GS----- 109
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ-PEEALELFKKMIDE 211
VD +R+VF+++ + +++ W +++ ++ + +EA+ELF KMI
Sbjct: 110 --------------VDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISG 155
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
+ P+ SVL AC +LS+ G V+ + ++ I V +LI MY++ G +E+A
Sbjct: 156 HIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDA 215
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
F K++V++ +++G A EA +F ++ GI + TF S+L+
Sbjct: 216 RKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASI 275
Query: 332 GLITEGCQLFRR-MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK-FISY 389
G + +G Q+ R + G Y+ I + L+ + SR G + A + M ED+ IS+
Sbjct: 276 GAMGKGEQIHGRLLKGGYKSNQCICN--ALISMYSRCGNIEAAFQVFNEM--EDRNVISW 331
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
++++ + ++ + M++ G + +E
Sbjct: 332 TSMITGFAKHGFATRALEMFHKMLETGTKPNE 363
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 163/533 (30%), Positives = 253/533 (47%), Gaps = 71/533 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H V K D++V N+LI Y + AR+LFDK+ +DV SW+T++ Y+
Sbjct: 142 LGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYD 201
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG------ 114
E L L + + + +I ++ + A L L GK +H Y + G
Sbjct: 202 RSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSG 261
Query: 115 -------LEYMLNMEN--------------------ALLLMYAKCKEMDEALRLF----- 142
++ + EN A++ Y C ++E +RLF
Sbjct: 262 VPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLG 321
Query: 143 --------------DEMGSR--------------RNIVSLN-ILINGYIDM----ELVDL 169
E G+ RN +L+ +L +IDM V
Sbjct: 322 EGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRS 381
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
AR VFD KD+++W +M+ + +EA ++F M G+ P+E MVS+L C+
Sbjct: 382 ARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAK 441
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+L+ G+ +H +I + I D +KT+ +DMY+ CG ++ A F + +D+ W M
Sbjct: 442 AGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAM 501
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I G A +G G AL +F +ME G+ PN+ TF+ L AC HSGL+ EG +LF +M +
Sbjct: 502 ISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFG 561
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
P +EH+ C+VDLL RAGLL +A E IK MP + + L+AC + LG+ A
Sbjct: 562 FTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAA 621
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ L VL+SN YA W +VA RR MK+ K+PG S I++
Sbjct: 622 KQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEV 674
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 124/257 (48%), Gaps = 34/257 (13%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D + + AC + G+ VH + K G + + NAL++MY+
Sbjct: 123 DNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYS------------ 170
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
E+GS + LAR +FD+I +KD+V W +M+ ++ +EAL
Sbjct: 171 -EVGS-------------------LALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEAL 210
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK--TALID 260
+L + M V P E M+S+ + L++L+ G+ +H ++++N + V TALID
Sbjct: 211 DLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALID 270
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
MY KC +L A F +++WT MI + NE +R+F +M +G+ PNE T
Sbjct: 271 MYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEIT 330
Query: 321 FVSVLAACRHSGLITEG 337
+S++ C +G + G
Sbjct: 331 MLSLVKECGTAGALELG 347
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 72/132 (54%)
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252
+K P +A +++ M D V+ SVL AC + + G+ VH F+++N D
Sbjct: 100 IKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDV 159
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
FV ALI MYS+ GSL A + F K + KDVV+W+TMI GL +EAL + M
Sbjct: 160 FVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVM 219
Query: 313 GIKPNEATFVSV 324
+KP+E +S+
Sbjct: 220 RVKPSEIGMISI 231
>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
Length = 625
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 249/473 (52%), Gaps = 42/473 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H +T SD V NS++ Y + F ++R +FD+M R+ GSWN L++ Y
Sbjct: 143 GKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAV 202
Query: 62 FSDSG---EVLILFKQLIFEGIVADKITLVILFSAC-ARLEKLHYGKTVHCYATK----V 113
+ E KQ+ + + D T+ L C + K YG+ +HCY K +
Sbjct: 203 SGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVL 262
Query: 114 GLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
GL+ +++ L+ MY++ + V + R V
Sbjct: 263 GLDSDVHLGCCLIDMYSRSNK--------------------------------VVVGRRV 290
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSN 232
FD + +++ W +M++G V+ +EAL LF+ M + +GV P+ +VSVL ACSS S
Sbjct: 291 FDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSG 350
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD-CKDVVTWTTMIE 291
L GR +H F ++ + + + ALIDMYSKCGSL+ A F CKD ++W++MI
Sbjct: 351 LLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMIS 410
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
G +G G EA+ ++ +M + GI+P+ T V +L+AC SGL+ EG ++ + Y ++
Sbjct: 411 GYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGLVNEGLNIYSSVINDYGIE 470
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
PT+E C+VD+L RAG L +A +FIK +P E + AL+S I + + ++ +
Sbjct: 471 PTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSVWGALVSCSIIHGDLEMQELAYRF 530
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+++L ++ YV +SN YA W VAE RR MK+ + RK PG S I + +
Sbjct: 531 LIQLEPKNPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINN 583
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 110/404 (27%), Positives = 179/404 (44%), Gaps = 52/404 (12%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS------IY 59
H+ + L + ++ LI Y +R++FD + ++V WN+L++ +Y
Sbjct: 46 HSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGCVKNRLY 105
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N E LF Q+ ++ D TL L + L L GK++H + + G
Sbjct: 106 N------EAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDT 159
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ N+++ MY KC DE+ ++FDEM + RN S N+LI GY
Sbjct: 160 VVANSIMSMYCKCGNFDESRKVFDEM-TIRNSGSWNVLIAGY------------------ 200
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC-SSLSNLQYGRL 238
+ G + EE E K+M + V PD + S+L C + YGR
Sbjct: 201 --------AVSGNCNFR--EETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRE 250
Query: 239 VHRFILQNNIT----QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
+H +I++N + D + LIDMYS+ + F + C++V +WT MI G
Sbjct: 251 LHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYV 310
Query: 295 NYGLGNEALRVFYQMER-KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
G +EAL +F M+ G++PN + VSVL AC + G Q+ G R +
Sbjct: 311 ENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQIH---GFAVRKELN 367
Query: 354 IEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
E +C L+D+ S+ G L A + IS+ +++S
Sbjct: 368 NEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISG 411
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 129 YAKCKEMDEALRLFDEM-------------GSRRNIVSLNILINGYIDMELVDL------ 169
YA E D +L L + S I+SL + N ++ +L+
Sbjct: 14 YASAFEFDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQH 73
Query: 170 ---AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
+R VFD + K++ LW S+++GCVK + EA +LF +M V PD+ + ++
Sbjct: 74 PYHSRLVFDSLQHKNVFLWNSLINGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKV 133
Query: 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW 286
S L L G+ +H ++ D V +++ MY KCG+ +E+ F + ++ +W
Sbjct: 134 SSELGALFSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSW 193
Query: 287 TTMIEGLANYGLGN---EALRVFYQMERKGIKPNEATFVSVLAAC 328
+I G A G N E QM+ ++P+ T S+L C
Sbjct: 194 NVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLC 238
>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
Length = 637
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 148/465 (31%), Positives = 243/465 (52%), Gaps = 34/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + + T ++ + V +L+ YG++ TDA +F +M RDV +W+ +++ Y
Sbjct: 79 IGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYA 138
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF+Q+ +G+ +K+TLV ACA L L G +H G++ +
Sbjct: 139 RNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVV 198
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ +Y KC ++ A+ E F +IV+K
Sbjct: 199 VGTALVNLYGKCGRIEAAV--------------------------------EAFGQIVEK 226
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++V W ++ + + +A+ + +M EG+ P+ VSVL AC++++ L+ GR +H
Sbjct: 227 NVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIH 286
Query: 241 RF--ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+L + D +V TAL++MYSKCG+L A F K D+V W ++I A +G
Sbjct: 287 ERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQ 346
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
+AL +F +M +G++P TF SVL AC H+G++ +G + F G + + P EHF
Sbjct: 347 TEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFG 406
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C+VDLL RAG + +E+ + MP E +++ A L AC TY D A N+ +L +
Sbjct: 407 CMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPR 466
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVLLSN YA G W++VA R+ M+ T K+ G S I++K
Sbjct: 467 KRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVK 511
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 173/360 (48%), Gaps = 38/360 (10%)
Query: 24 LIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVAD 83
++ Y ++ R FD+MP D+ SWN L++ Y D + F+ ++ +GI
Sbjct: 1 MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60
Query: 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143
++ + I SAC ++ G+++ G+E ++ AL+ MY K +A +F
Sbjct: 61 EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
M R D+V W +M+ + P EAL
Sbjct: 121 RMSHR--------------------------------DVVAWSAMVAAYARNGHPREALG 148
Query: 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263
LF++M +GV P++ +VS L AC+SL +L+ G L+H+ + I V TAL+++Y
Sbjct: 149 LFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYG 208
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KCG +E A+ F + K+VV W+ + A +A+RV ++M+ +G+ PN TFVS
Sbjct: 209 KCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVS 268
Query: 324 VLAACRHSGLITEGCQLFRR---MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE-FIKI 379
VL AC + +G ++ R +GG ++ + LV++ S+ G L A + F KI
Sbjct: 269 VLDACAAIAALKQGRRIHERTQVLGG--GLESDVYVLTALVNMYSKCGNLALAGDMFDKI 326
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 121/240 (50%), Gaps = 4/240 (1%)
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
+++ Y + + R+ FDE+ DIV W +++ + + + F+ M+ +G+ P
Sbjct: 1 MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
E + LSAC+ + GR + IL I +++ V+TAL+ MY K G +A F
Sbjct: 61 EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
+ +DVV W+ M+ A G EAL +F QM+ G+ PN+ T VS L AC G +
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180
Query: 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA-EEFIKIMPAEDKFISYKALLSA 395
G + +R+ +Q + LV+L + G + A E F +I+ E +++ A+ +A
Sbjct: 181 GALMHQRVEA-QGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIV--EKNVVAWSAISAA 237
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 243/467 (52%), Gaps = 42/467 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H +V +T D + NSLI Y + L +A +F + RD+ SW ++S Y
Sbjct: 326 LGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYE 385
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + L +K + EGI+ D+IT+ I+ SAC+ L L G +H
Sbjct: 386 NCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLH------------- 432
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM----ELVDLAREVFDE 176
E+ ++ +VS +I+ N IDM + +D A E+F
Sbjct: 433 -----------------------EVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHS 469
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
++K+IV W S++ G + EAL F++MI + P+ +V VLSAC+ + L G
Sbjct: 470 TLEKNIVSWTSIILGLRINNRCFEALFFFREMIRR-LKPNSVTLVCVLSACARIGALTCG 528
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+ +H L+ ++ D F+ A++DMY +CG +E A F+ D +V +W ++ G A
Sbjct: 529 KEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVD-HEVTSWNILLTGYAER 587
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G G A +F +M + PNE TF+S+L AC SG++ EG + F M Y + P ++H
Sbjct: 588 GKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKH 647
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL R+G L +A EFI+ MP + + ALL++C + +LG+ A N+ +
Sbjct: 648 YACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDD 707
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
S Y+LLSN YA G W +VAE R+ M++ PG S +++K
Sbjct: 708 TTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVK 754
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 163/327 (49%), Gaps = 32/327 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G ++++V+ + + +GN+L+ + R DA +F +M R++ SWN L+ Y
Sbjct: 125 GSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAK 184
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L L+ ++++ G+ D T + C + L G+ +H + + G E +++
Sbjct: 185 AGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDV 244
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC + V+ AR VFD++ ++D
Sbjct: 245 VNALITMYVKCGD--------------------------------VNTARLVFDKMPNRD 272
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W +M+ G + E L LF MI V PD M SV++AC L + + GR +H
Sbjct: 273 RISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHG 332
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++L+ +D + +LI MYS G +EEA F +T+C+D+V+WT MI G N + +
Sbjct: 333 YVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQK 392
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAAC 328
AL + ME +GI P+E T VL+AC
Sbjct: 393 ALETYKMMEAEGIMPDEITIAIVLSAC 419
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 133/312 (42%), Gaps = 42/312 (13%)
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
V L C G V+ Y + L + NALL M+ + + +A +F M
Sbjct: 110 VALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRM-E 168
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
+RN+ S N+L+ G KA +EAL+L+ +
Sbjct: 169 KRNLFSWNVLVG-------------------------------GYAKAGLFDEALDLYHR 197
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M+ GV PD VL C + NL GR +H +++ D V ALI MY KCG
Sbjct: 198 MLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGD 257
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+ A + F K +D ++W MI G G+ E LR+F M + + P+ T SV+ A
Sbjct: 258 VNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITA 317
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQ----PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383
C G G Q+ G V R + P+I + L+ + S GL+ +AE
Sbjct: 318 CELLGDDRLGRQIH---GYVLRTEFGRDPSIHN--SLIPMYSSVGLIEEAETVFSRTECR 372
Query: 384 DKFISYKALLSA 395
D +S+ A++S
Sbjct: 373 D-LVSWTAMISG 383
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 148/464 (31%), Positives = 249/464 (53%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ KT +SD+YV LI Y + AR + + + +DV SW ++++ Y
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYV 422
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L FK++ GI D I L S CA + + G +H G ++
Sbjct: 423 QHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVS 482
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ +YA+C + EA F+EM + I N L++G+
Sbjct: 483 IWNALVNLYARCGRIREAFSSFEEMELKDGITG-NGLVSGFA------------------ 523
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+S +H EEAL++F +M GV + VS LSA ++L+ ++ G+ +H
Sbjct: 524 -----QSGLH--------EEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIH 570
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + + V ALI +Y KCGS E+A + F + ++ V+W T+I + +G G
Sbjct: 571 ARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGL 630
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F QM+++GIKPN+ TF+ VLAAC H GL+ EG F+ M Y ++P +H+ C+
Sbjct: 631 EALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACV 690
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+D+ RAG L +A++FI+ MP + ++ LLSAC + ++G+ A ++++L
Sbjct: 691 IDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDS 750
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+YVLLSN YA+ W + R+ M++ RK+PG S I++K+
Sbjct: 751 ASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKN 794
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 128/467 (27%), Positives = 220/467 (47%), Gaps = 77/467 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA K S+I+VGN++I Y R F A +F MP RD ++NTL+S +
Sbjct: 162 GRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQ 221
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L +F+++ F G+ D +T+ L +ACA L L G +H Y K G+ M
Sbjct: 222 CGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIM 281
Query: 122 E-------------------------------NALLLMYAKCKEMDEALRLFDEM---GS 147
E N +L+ + + ++ ++ LF +M G
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341
Query: 148 RRN----------------------IVSLNI-------------LINGYIDMELVDLARE 172
R N I SL++ LI+ Y ++ AR
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARR 401
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
V + + +KD+V W SM+ G V+ + ++AL FK+M G+ PD + S +S C+ ++
Sbjct: 402 VLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA 461
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
++ G +H I + + D + AL+++Y++CG + EA +F + + KD +T ++ G
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSG 521
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
A GL EAL+VF +M++ G+K N TFVS L+A + I +G Q+ R V +
Sbjct: 522 FAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHAR---VIKTGH 578
Query: 353 TIEHFV--CLVDLLSRAGLLYQAE-EFIKIMPAEDKFISYKALLSAC 396
+ E V L+ L + G A+ EF ++ +E +S+ ++++C
Sbjct: 579 SFETEVGNALISLYGKCGSFEDAKMEFSEM--SERNEVSWNTIITSC 623
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 191/399 (47%), Gaps = 42/399 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA L VGN LI Y + L AR +F+++ RD SW ++S Y
Sbjct: 64 IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E L L++Q+ G+V L + S+C + E G+ +H K G + + NA
Sbjct: 124 GEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNA 183
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
++ +Y +C A R+F +M R+ V+ N LI+G+
Sbjct: 184 VITLYLRCGSFRLAERVFCDM-PHRDTVTFNTLISGHAQCG------------------- 223
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
HG E ALE+F++M G++PD + S+L+AC+SL +LQ G +H ++
Sbjct: 224 -----HG-------EHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF 271
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ I+ D ++ +L+D+Y KCG +E ALV F +D +VV W M+ ++
Sbjct: 272 KAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFE 331
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CL 360
+F QM+ GI+PN+ T+ +L C + I G Q+ V+ E + L
Sbjct: 332 LFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHS-----LSVKTGFESDMYVSGVL 386
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
+D+ S+ G L +A ++++ +D +S+ ++++ + +
Sbjct: 387 IDMYSKYGWLEKARRVLEMLKEKD-VVSWTSMIAGYVQH 424
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 149/462 (32%), Positives = 242/462 (52%), Gaps = 32/462 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G G+ K D YV LI + + AR+LF + D+ S+N L+S ++
Sbjct: 222 VGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFS 281
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ + F++L+ G T+V L + LH + + K G +
Sbjct: 282 CNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPS 341
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL +Y++ E +DLAR++FDE +K
Sbjct: 342 VSTALTTIYSRLNE--------------------------------IDLARQLFDESSEK 369
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ W +M+ G ++ E A+ LF++M+ TP+ + S+LSAC+ L L +G+ VH
Sbjct: 370 TVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVH 429
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ I N+ Q+ +V TALIDMY+KCG++ EA F T K+ VTW TMI G +G G+
Sbjct: 430 QLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGD 489
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL++F +M G +P+ TF+SVL AC H+GL+ EG ++F M YR++P EH+ C+
Sbjct: 490 EALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACM 549
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L RAG L +A EFI+ MP E + LL AC+ + + +L + + + +L +
Sbjct: 550 VDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNV 609
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN Y++E ++ + A R +K+ K PG ++I++
Sbjct: 610 GYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEV 651
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/434 (24%), Positives = 200/434 (46%), Gaps = 41/434 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G LHAH DS+++V ++L+ Y + + AR +FDKMP RD WNT+++ +
Sbjct: 121 LGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLV 180
Query: 59 YN-DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
N + DS +V FK ++ +G+ D T+ + A A ++++ G + C A K+G +
Sbjct: 181 RNCCYDDSVQV---FKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHF 237
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ L+ +++KC+++D A LF M + ++VS N LI+G+
Sbjct: 238 DDYVLTGLISVFSKCEDVDTARLLFG-MIRKPDLVSYNALISGF---------------- 280
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
C + E A++ F++++ G MV ++ S +L
Sbjct: 281 -------------SC--NGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLAC 325
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+ F +++ V TAL +YS+ ++ A F ++ K V W MI G A G
Sbjct: 326 CIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSG 385
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
L A+ +F +M PN T S+L+AC G ++ G + + + ++ I
Sbjct: 386 LTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKS-KNLEQNIYVS 444
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
L+D+ ++ G + +A + + +E +++ ++ + D K+ N M+ LG
Sbjct: 445 TALIDMYAKCGNISEASQLFDLT-SEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGF 503
Query: 418 QSHEAYVLLSNFYA 431
Q + LS YA
Sbjct: 504 QP-SSVTFLSVLYA 516
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 5/183 (2%)
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
G + ++ ++ L D+ AR +F + DI L+ ++ G ++ +
Sbjct: 35 GYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKG-FSFSPDASSISFY 93
Query: 206 KKMI-DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
++ + ++PD +SA S NL G +H + + + FV +AL+D+Y K
Sbjct: 94 THLLKNTTLSPDNFTYAFAISA-SPDDNL--GMCLHAHAVVDGFDSNLFVASALVDLYCK 150
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
+ A F K +D V W TMI GL +++++VF M +G++ + T +V
Sbjct: 151 FSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATV 210
Query: 325 LAA 327
L A
Sbjct: 211 LPA 213
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 141/464 (30%), Positives = 245/464 (52%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + ++ DS + + +L+ Y + AR LFD M R+V SWN+++ Y
Sbjct: 254 VGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYV 313
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E +++F++++ EG+ ++++ ACA L L G+ +H + ++GL+
Sbjct: 314 QNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLD---- 369
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
RN+ +N LI+ Y + VD A +F ++ +
Sbjct: 370 ----------------------------RNVSVVNSLISMYCKCKEVDTAASMFGKLQSR 401
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V W +M+ G + +P +AL F +M V PD VSV++A + LS + + +H
Sbjct: 402 TLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIH 461
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++++ + ++ FV TAL+DMY+KCG++ A + F + V TW MI+G +G G
Sbjct: 462 GVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGK 521
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F +M++ IKPN TF+SV++AC HSGL+ G + F M Y ++ +++H+ +
Sbjct: 522 AALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAM 581
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +A +FI MP + Y A+L AC + + +K A + +L
Sbjct: 582 VDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDG 641
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+VLL+N Y W +V + R +M RK PG S++++K+
Sbjct: 642 GYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKN 685
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 171/327 (52%), Gaps = 32/327 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K+ D++ L + Y + +AR +FD+MP RD+ SWNT+++ Y+
Sbjct: 153 VGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYS 212
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L + K + E + IT+V + A + L + GK +H YA + G + ++N
Sbjct: 213 QNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN 272
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAKC ++ A +LFD M RN+VS N +I+ Y+ E
Sbjct: 273 ISTALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDAYVQNE--------------- 316
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
P+EA+ +F+KM+DEGV P + ++ L AC+ L +L+ GR +H
Sbjct: 317 ----------------NPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH 360
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ ++ + ++ V +LI MY KC ++ A F K + +V+W MI G A G
Sbjct: 361 KLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPI 420
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAA 327
+AL F QM + +KP+ T+VSV+ A
Sbjct: 421 DALNYFSQMRSRTVKPDTFTYVSVITA 447
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 148/329 (44%), Gaps = 32/329 (9%)
Query: 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEV 68
V K L + + L+ + R +A +F+ + + ++T++ + SD +
Sbjct: 60 VFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKA 119
Query: 69 LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
L F ++ ++ + L C +L GK +H K G L L M
Sbjct: 120 LQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENM 179
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
YAKC++++EA R+VFD + ++D+V W ++
Sbjct: 180 YAKCRQVNEA--------------------------------RKVFDRMPERDLVSWNTI 207
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ G + ALE+ K M +E + P +VSVL A S+L + G+ +H + +++
Sbjct: 208 VAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGF 267
Query: 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
+ TAL+DMY+KCGSLE A F ++VV+W +MI+ EA+ +F +
Sbjct: 268 DSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQK 327
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEG 337
M +G+KP + + + L AC G + G
Sbjct: 328 MLDEGVKPTDVSVMGALHACADLGDLERG 356
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 134/281 (47%), Gaps = 13/281 (4%)
Query: 122 ENALLLMYAKC---KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
E+ L+ +C KE+ + L L + G + L++ + VD A VF+ I
Sbjct: 37 EHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPID 96
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K VL+ +M+ G K ++AL+ F +M + V P +L C + L+ G+
Sbjct: 97 SKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKE 156
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++++ + D F T L +MY+KC + EA F + +D+V+W T++ G + G+
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGM 216
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
AL + M + +KP+ T VSVL A LI+ G ++ Y ++ + V
Sbjct: 217 ARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHG-----YAMRSGFDSLV 271
Query: 359 ----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
LVD+ ++ G L A + M E +S+ +++ A
Sbjct: 272 NISTALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDA 311
>gi|449469206|ref|XP_004152312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08490-like [Cucumis sativus]
Length = 873
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 148/467 (31%), Positives = 262/467 (56%), Gaps = 5/467 (1%)
Query: 1 MGKGLHAHVTK-TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+GK +H ++ + L D VGN+L+ FY + A F + +D+ SWN++++ +
Sbjct: 371 IGKMIHGYILRHPVLSEDSTVGNALVSFYTKCNDVKSAFHSFSLISSKDLISWNSVLNAF 430
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL---E 116
+F ++ + L ++ E D T++ + + C + K VHCY+ + L +
Sbjct: 431 AEFGNTTQFPRLLHLMLRERFKPDHFTILSIINFCITVLGGCKVKEVHCYSVRACLFEAD 490
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
Y + NALL Y+KC +D AL++F+ +RN+V+ N +I+ Y++ + + A +F
Sbjct: 491 YGPTILNALLDAYSKCGIIDYALKIFESSSGKRNLVTCNSMISCYVNCKSPNDALTIFSG 550
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ + D+ W M+ + P +AL LF+++ +G+ PD ++S+L C+ L++ +
Sbjct: 551 MSETDLTTWNLMIRVYAENNCPRDALGLFRRLQIKGMKPDAVSIMSLLPVCNELASFRLL 610
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+ H + ++ +D ++ AL+D Y+KCG+++ A F + KD+V +T+MI G A +
Sbjct: 611 KECHGYSFRSRF-EDVYLDGALLDAYAKCGAVDCAYKLFESSSQKDLVMFTSMISGYAIH 669
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G+G EAL+VF M G+KP+ S+L+AC H+GL+ +G +F M V ++PT+EH
Sbjct: 670 GMGEEALKVFTNMLESGVKPDHVVVTSILSACSHTGLVDQGLNIFHSMEEVIHIKPTMEH 729
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL+R G + A F+ MP + + LL AC T+ E +LG VA + +
Sbjct: 730 YACVVDLLARGGRIKDAYSFVIGMPIQPDANIWGTLLGACKTHHEVELGLVVAEQLFETK 789
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YV++SN YA + W V E R+ MKE + +K PG S I+++
Sbjct: 790 ADDIGNYVVMSNLYAADAKWDGVLEVRKLMKEKELKKPPGCSWIEVE 836
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 163/338 (48%), Gaps = 39/338 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+GK L + K + V L++ Y R F + LF+++ RDV +WN ++S Y
Sbjct: 61 IGKALQGYAVKQGEIACQSVYKGLLNLYARCGAFDECWKLFEQLNHRDVVTWNIILSGYC 120
Query: 60 -NDFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ D+ + + LF ++ EG V IT+ + C+R+ K GK++H + K GL+
Sbjct: 121 RSQIHDT-KAIRLFVKMHAEGEVKPSAITIASILPVCSRVGKGVVGKSIHSFVMKSGLDR 179
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ NAL+ MYAK + +D A F+ I
Sbjct: 180 DTLVGNALISMYAKSGQ-----PWYD--------------------------AYAAFNSI 208
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN---LQ 234
+ KD+V W +++ + +AL+LF M++E + P+ + +L C+S N +
Sbjct: 209 IHKDVVTWNTIISALAEKNLMFDALQLFSLMLEEPIEPNYITIACILPVCASFGNNVSCR 268
Query: 235 YGRLVHRFI-LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
+G+ +H +I + + +D V AL+++Y + G +EEA + F +D+V+W T+I G
Sbjct: 269 FGKEIHGYIHRRTELIEDISVCNALMNLYLRVGQMEEAEILFSHLKQRDLVSWNTLISGY 328
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
+ EA+ F ++ G P+ T +SVL AC +S
Sbjct: 329 SLNDKWLEAVDHFCKLLCLGSDPDSVTLISVLPACAYS 366
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 157/357 (43%), Gaps = 43/357 (12%)
Query: 48 DVGSWNTLMSIYNDFSDSGEVLILF--KQLIFEGIVADKITLVILFSACARLEKLHYGKT 105
D SW++ + + EVL +F K G D +F +CA L ++ GK
Sbjct: 5 DFTSWSSTIRNLCLNAKHQEVLSVFVHKFQCSSGFKPDNHIFAAIFKSCAALFAINIGKA 64
Query: 106 VHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME 165
+ YA K G ++ LL +YA+C DE +LF+++ R
Sbjct: 65 LQGYAVKQGEIACQSVYKGLLNLYARCGAFDECWKLFEQLNHR----------------- 107
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHG-CVKAKQPEEALELFKKMIDEG-VTPDEEVMVSV 223
D+V W ++ G C +A+ LF KM EG V P + S+
Sbjct: 108 ---------------DVVTWNIILSGYCRSQIHDTKAIRLFVKMHAEGEVKPSAITIASI 152
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG-SLEEALVTFYKTDCKD 282
L CS + G+ +H F++++ + +D V ALI MY+K G +A F KD
Sbjct: 153 LPVCSRVGKGVVGKSIHSFVMKSGLDRDTLVGNALISMYAKSGQPWYDAYAAFNSIIHKD 212
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR 342
VVTW T+I LA L +AL++F M + I+PN T +L C G C+ +
Sbjct: 213 VVTWNTIISALAEKNLMFDALQLFSLMLEEPIEPNYITIACILPVCASFG-NNVSCRFGK 271
Query: 343 RMGG-VYRVQPTIEHF-VC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ G ++R IE VC L++L R G + +AE + D +S+ L+S
Sbjct: 272 EIHGYIHRRTELIEDISVCNALMNLYLRVGQMEEAEILFSHLKQRD-LVSWNTLISG 327
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 158/364 (43%), Gaps = 69/364 (18%)
Query: 2 GKGLHAHV-TKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
GK +H ++ +T L DI V N+L++ Y R+ +A +LF + RD+ SWNTL+S Y+
Sbjct: 270 GKEIHGYIHRRTELIEDISVCNALMNLYLRVGQMEEAEILFSHLKQRDLVSWNTLISGYS 329
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYML 119
E + F +L+ G D +TL+ + ACA + L GK +H Y + L
Sbjct: 330 LNDKWLEAVDHFCKLLCLGSDPDSVTLISVLPACAYSQNLRIGKMIHGYILRHPVLSEDS 389
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ NAL+ Y KC ++ A F + S
Sbjct: 390 TVGNALVSFYTKCNDVKSAFHSFSLISS-------------------------------- 417
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KD++ W S+++ + + L M+ E PD ++S+++ C ++ + V
Sbjct: 418 KDLISWNSVLNAFAEFGNTTQFPRLLHLMLRERFKPDHFTILSIINFCITVLGGCKVKEV 477
Query: 240 HRFILQNNITQDAFVKT---ALIDMYSKCGSLEEALVTFYKT-----------------D 279
H + ++ + + + T AL+D YSKCG ++ AL F + +
Sbjct: 478 HCYSVRACLFEADYGPTILNALLDAYSKCGIIDYALKIFESSSGKRNLVTCNSMISCYVN 537
Query: 280 CK---------------DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
CK D+ TW MI A +AL +F +++ KG+KP+ + +S+
Sbjct: 538 CKSPNDALTIFSGMSETDLTTWNLMIRVYAENNCPRDALGLFRRLQIKGMKPDAVSIMSL 597
Query: 325 LAAC 328
L C
Sbjct: 598 LPVC 601
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 151/464 (32%), Positives = 238/464 (51%), Gaps = 33/464 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + + D ++ ++L+ YG+ A +F++MP + V +WN+++S Y
Sbjct: 226 GMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGL 285
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
DS + LFK++ EG+ TL L C+R +L GK VH Y + ++ + +
Sbjct: 286 KGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFI 345
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
++L+ +Y KC + V+LA +F I
Sbjct: 346 NSSLMDLYFKCGK--------------------------------VELAENIFKLIPKSK 373
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W M+ G V + EAL LF +M V PD SVL+ACS L+ L+ G +H
Sbjct: 374 VVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHN 433
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I++ + + V AL+DMY+KCG+++EA F +D+V+WT+MI ++G
Sbjct: 434 LIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYV 493
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F +M + +KP+ TF+++L+AC H+GL+ EGC F +M VY + P +EH+ CL+
Sbjct: 494 ALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLI 553
Query: 362 DLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
DLL RAG L++A E ++ P D L SAC + DLG ++A ++
Sbjct: 554 DLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDS 613
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
Y+LLSN YA W EV R MKEL +K PG S I++
Sbjct: 614 STYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQ 657
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 197/399 (49%), Gaps = 42/399 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + KT L DI VG+SL+ Y + F A LF++MP +DV WNT++S Y
Sbjct: 124 LGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYY 183
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L F + G + +T+ S+CARL L+ G +H G
Sbjct: 184 QSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSF 243
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +AL+ MY KC ++ A+ +F++M ++ +V+ N +I+GY +
Sbjct: 244 ISSALVDMYGKCGHLEMAIEVFEQM-PKKTVVAWNSMISGY---------------GLKG 287
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D + ++LFK+M +EGV P + S++ CS + L G+ VH
Sbjct: 288 DSI----------------SCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVH 331
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ ++N I D F+ ++L+D+Y KCG +E A F VV+W MI G G
Sbjct: 332 GYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLF 391
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH---- 356
EAL +F +M + ++P+ TF SVL AC + +G ++ + ++ +++
Sbjct: 392 EALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLI-----IEKKLDNNEVV 446
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
L+D+ ++ G + +A K +P D +S+ ++++A
Sbjct: 447 MGALLDMYAKCGAVDEAFSVFKCLPKRD-LVSWTSMITA 484
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 187/396 (47%), Gaps = 36/396 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR-DVGSWNTLMSIYN 60
GK +H V L +DI++ +LI+ Y L+ A+ +FD M ++ WN LM+ Y
Sbjct: 22 GKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYT 81
Query: 61 DFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L LF++L+ + + D T + AC L K GK +H K GL +
Sbjct: 82 KNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDI 141
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ ++L+ MYAKC ++A+ LF+EM +
Sbjct: 142 VVGSSLVGMYAKCNAFEKAIWLFNEMP--------------------------------E 169
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KD+ W +++ ++ +EALE F M G P+ + + +S+C+ L +L G +
Sbjct: 170 KDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEI 229
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ + D+F+ +AL+DMY KCG LE A+ F + K VV W +MI G G
Sbjct: 230 HEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDS 289
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+++F +M +G+KP T S++ C S + EG + R+Q +
Sbjct: 290 ISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEG-KFVHGYTIRNRIQSDVFINSS 348
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
L+DL + G + AE K++P + K +S+ ++S
Sbjct: 349 LMDLYFKCGKVELAENIFKLIP-KSKVVSWNVMISG 383
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 142/317 (44%), Gaps = 40/317 (12%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D L+ L AC + L GK +H +GL +N + L CK +
Sbjct: 2 DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGL------QNDIFL----CKNL------- 44
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK-DIVLWRSMMHGCVKAKQPEEA 201
IN Y+ L D A+ VFD + + +I LW +M G K EA
Sbjct: 45 ---------------INLYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEA 89
Query: 202 LELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
LELF+K++ + PD SVL AC L G+++H +++ + D V ++L+
Sbjct: 90 LELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVG 149
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
MY+KC + E+A+ F + KDV W T+I G EAL F M R G +PN T
Sbjct: 150 MYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVT 209
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIK 378
+ +++C + G ++ + ++ F+ LVD+ + G L A E +
Sbjct: 210 ITTAISSCARLLDLNRGMEIHEEL---INSGFLLDSFISSALVDMYGKCGHLEMAIEVFE 266
Query: 379 IMPAEDKFISYKALLSA 395
MP + +++ +++S
Sbjct: 267 QMP-KKTVVAWNSMISG 282
>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
Length = 686
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 156/469 (33%), Positives = 264/469 (56%), Gaps = 26/469 (5%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LHAH+ K + + N+L++ YG+ + A +FD+MP RD +W ++++ N
Sbjct: 90 AKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQ 149
Query: 62 FSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ SG+ L +F + + D L ACA L + +G+ VHC+ + EY +
Sbjct: 150 ANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHF--IVSEYAND 207
Query: 121 --MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++++L+ MYAKC ++ A +FD + +N +S +++GY + A E+F +
Sbjct: 208 EVVKSSLVDMYAKCGLLNSAKAVFDSI-RVKNTISWTAMVSGYAKSGRKEEALELFRILP 266
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP-DEEVMVSVLSACSSLSNLQYGR 237
K++ W +++ G V++ + EA +F +M E V D V+ S++ AC++L+ GR
Sbjct: 267 VKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGR 326
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH ALIDMY+KC + A F + +DVV+WT++I G+A +G
Sbjct: 327 QVH--------------GNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHG 372
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+AL ++ M G+KPNE TFV ++ AC H G + +G +LF+ M Y ++P+++H+
Sbjct: 373 QAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHY 432
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM---K 414
CL+DLL R+GLL +AE I MP ++ ALLSAC +G ++A++++ K
Sbjct: 433 TCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFK 492
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
L + S Y+LLSN YA W +V+EARR + E++ RK PG+S ++++
Sbjct: 493 LKDPS--TYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVR 539
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 83/198 (41%), Gaps = 34/198 (17%)
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L + +H I++ I Q + L+++Y KCG+ AL F + +D + W +++
Sbjct: 86 TLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLT 145
Query: 292 GLANYGLGNEAL-RVFYQMERKGIKPNEATFVSVLAACRHSGLITEG------------- 337
L L + L G++P++ F +++ AC + G I G
Sbjct: 146 ALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYA 205
Query: 338 ---------------CQLFRRMGGVY---RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
C L V+ RV+ TI + +V +++G +A E +I
Sbjct: 206 NDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTIS-WTAMVSGYAKSGRKEEALELFRI 264
Query: 380 MPAEDKFISYKALLSACI 397
+P ++ + S+ AL+S +
Sbjct: 265 LPVKNLY-SWTALISGFV 281
>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
from Arabidopsis thaliana BAC F28A21 gi|T04867 and
contains multiple PPR PF|01535 repeats. EST gb|AI999742
comes from this gene. This gene may be cut off, partial
[Arabidopsis thaliana]
Length = 757
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 157/503 (31%), Positives = 258/503 (51%), Gaps = 40/503 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVG---------- 50
+GK +H + LD D +V S+ H Y R DAR +FD+M +DV
Sbjct: 134 VGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYA 193
Query: 51 -------------------------SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKI 85
SWN ++S +N E +++F+++ G D++
Sbjct: 194 RKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQV 253
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T+ + + E L+ G+ +H Y K GL + +A++ MY K + + LF++
Sbjct: 254 TVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQF 313
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFD----EIVDKDIVLWRSMMHGCVKAKQPEEA 201
V N I G LVD A E+F+ + ++ ++V W S++ GC + + EA
Sbjct: 314 EMMEAGVC-NAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEA 372
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
LELF++M GV P+ + S+L AC +++ L +GR H F ++ ++ + V +ALIDM
Sbjct: 373 LELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDM 432
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y+KCG + + + F K++V W +++ G + +G E + +F + R +KP+ +F
Sbjct: 433 YAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISF 492
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
S+L+AC GL EG + F+ M Y ++P +EH+ C+V+LL RAG L +A + IK MP
Sbjct: 493 TSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMP 552
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
E + ALL++C + DL + A + L ++ YVLLSN YA +G WTEV
Sbjct: 553 FEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDS 612
Query: 442 ARRNMKELQTRKKPGNSIIDLKH 464
R M+ L +K PG S I +K+
Sbjct: 613 IRNKMESLGLKKNPGCSWIQVKN 635
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 212/475 (44%), Gaps = 75/475 (15%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HA + K+ +D Y+ LI Y F DA ++ +P + S+++L+
Sbjct: 38 HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
+ + +F ++ G++ D L LF CA L GK +HC + GL+ ++ ++
Sbjct: 98 TQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSM 157
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM----ELVDLAREVFDEIVDKD 181
MY +C M +A ++FD M S +++V+ + L+ Y E+V + E+ ++ +
Sbjct: 158 FHMYMRCGRMGDARKVFDRM-SDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W ++ G ++ +EA+ +F+K+ G PD+ + SVL + L GRL+H
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHG 276
Query: 242 FILQNNITQDAFVKTALIDMYSKCGS-------------LEEALVTFYKTDCK------- 281
++++ + +D V +A+IDMY K G +E + Y T
Sbjct: 277 YVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDK 336
Query: 282 ---------------DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+VV+WT++I G A G EAL +F +M+ G+KPN T S+L
Sbjct: 337 ALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLP 396
Query: 327 ACRHSGLITEG----------------------CQLFRRMGG------VYRVQPTIEHFV 358
AC + + G ++ + G V+ + PT ++ V
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPT-KNLV 455
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPA------EDKFISYKALLSACITYSEFDLGKK 407
C L++ + +A+E + I + + FIS+ +LLSAC D G K
Sbjct: 456 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWK 510
>gi|297596280|ref|NP_001042300.2| Os01g0197500 [Oryza sativa Japonica Group]
gi|255672971|dbj|BAF04214.2| Os01g0197500 [Oryza sativa Japonica Group]
Length = 906
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 155/507 (30%), Positives = 255/507 (50%), Gaps = 46/507 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDVGSWNTLMSIY 59
+ +HAH L + V ++ Y R+ DAR +FD MP R WN L+S Y
Sbjct: 363 VASAVHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAY 422
Query: 60 NDFSDS-----------------------------------GEVLILFKQLIFEGIVADK 84
+ D +VL LF ++ G +
Sbjct: 423 SSGCDPDAARDAFARMAAAGARPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNA 482
Query: 85 ITLVILFSACARLEKLHY--GKTVH-CYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
++ + SAC L GK +H C K + L + N+L+ MY K EMD+A +
Sbjct: 483 ESMAVALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKA 542
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI------VDKDIVLWRSMMHGCVKA 195
F + + +N V+ N LI Y L D A +V ++ V ++V W +++ G +
Sbjct: 543 FRD-ATAKNTVTWNTLITSYAAARLCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASS 601
Query: 196 KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK 255
+ ALELF++M + ++P+ M +VLSAC L L+ GR +H ++ + + + V+
Sbjct: 602 GDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVE 661
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
LI+MY+KCG + A F +D+++W +M+ G +GL +EAL +F M ++
Sbjct: 662 NGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVE 721
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
P+ TFV+VL+AC H+G +TEG +LF RM +++ P++EH+ C+V LL RAGLL A E
Sbjct: 722 PDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASE 781
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
++ MP + ALL++C + + + + N+++ +QS ++L++N YA+ G
Sbjct: 782 LVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMCGM 841
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDL 462
W E + R KE RK PG S I++
Sbjct: 842 WDESKKVRVMTKEAGLRKNPGQSWIEV 868
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 104/419 (24%), Positives = 173/419 (41%), Gaps = 50/419 (11%)
Query: 45 PFRDVGSWNTLMSIYNDFSDSGEVLILFKQL-IFEGIVADKITLVILFSACARLEKLHYG 103
P WN L+ + S L L++++ + + TL + A A
Sbjct: 308 PTTSAVPWNRLLRAHLGRSRGDLALALYRRMRALSPALPNSYTLPLALRAAA---SPRVA 364
Query: 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
VH +A +GL ++ +L Y++ +A R+FD M R N LI+ Y
Sbjct: 365 SAVHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSS 424
Query: 164 MELVDLAREVFDEIVD----KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
D AR+ F + D V W +++ ++ + + L+LF +M G + E
Sbjct: 425 GCDPDAARDAFARMAAAGARPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAES 484
Query: 220 MVSVLSACSSLSNLQY--GRLVHRF-ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
M LSAC +L G+ +H +++ + FV +LI MY K G +++A F
Sbjct: 485 MAVALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFR 544
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG--IKPNEATFVSVLAACRHSGLI 334
K+ VTW T+I A L ++AL V QME+ G + PN ++ +V+ SG
Sbjct: 545 DATAKNTVTWNTLITSYAAARLCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDT 604
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
+LFRRM + + P + ++ +LS
Sbjct: 605 DRALELFRRMQQQW-LSPNV--------------------------------VTMATVLS 631
Query: 395 ACITYSEFDLGKKVANNMMKLGNQSHE-AYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
AC+ LG+++ + MK H L N YA G +V+ AR+ ++TR
Sbjct: 632 ACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCG---KVSGARKVFDGMKTR 687
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 139/413 (33%), Positives = 232/413 (56%), Gaps = 34/413 (8%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYA 110
WNTL+ Y + +S L++++ G+V D T L A + + G+T+H
Sbjct: 88 WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147
Query: 111 TKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLA 170
+ G ++ ++N+LL +YA C ++ A +
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYK------------------------------ 177
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230
VFD++ +KD+V W S+++G + +PEEAL L+ +M +G+ PD +VS+LSAC+ +
Sbjct: 178 --VFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKI 235
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
L G+ VH ++++ +T++ L+D+Y++CG +EEA F + K+ V+WT++I
Sbjct: 236 GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 295
Query: 291 EGLANYGLGNEALRVFYQMER-KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
GLA G G EA+ +F ME +G+ P E TFV +L AC H G++ EG + FRRM Y+
Sbjct: 296 VGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYK 355
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
++P IEHF C+VDLL+RAG + +A E+IK MP + + ++ LL AC + + DL +
Sbjct: 356 IEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFAR 415
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+++L YVLLSN YA E W++V + R+ M +K PG+S++++
Sbjct: 416 IQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 468
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 160/329 (48%), Gaps = 51/329 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ V ++ S IYV NSL+H Y A +FDKMP +D+ +WN S+ N
Sbjct: 139 LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN---SVIN 195
Query: 61 DFSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
F+++G E L L+ ++ +GI D T+V L SACA++ L GK VH Y KVGL
Sbjct: 196 GFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTR 255
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L+ N LL +YA+C ++EA LFDEM
Sbjct: 256 NLHSSNVLLDLYARCGRVEEAKTLFDEM-------------------------------- 283
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYG 236
VDK+ V W S++ G +EA+ELFK M EG+ P E V +L ACS ++ G
Sbjct: 284 VDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG 343
Query: 237 -----RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMI 290
R+ + ++ I ++D+ ++ G +++A + +VV W T++
Sbjct: 344 FEYFRRMREEYKIEPRIEHFG----CMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 399
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEA 319
+ G+ L F +++ ++PN +
Sbjct: 400 GACTVH--GDSDLAEFARIQILQLEPNHS 426
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 118/226 (52%), Gaps = 4/226 (1%)
Query: 170 AREVFDEIVDK-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSAC 227
A +VF +I ++ +W +++ G + A L+++M G V PD ++ A
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+++++++ G +H ++++ +V+ +L+ +Y+ CG + A F K KD+V W
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
++I G A G EAL ++ +M KGIKP+ T VS+L+AC G +T G ++ M V
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV 251
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
+ + L+DL +R G + +A+ M + +S+ +L+
Sbjct: 252 GLTR-NLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 295
>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 148/414 (35%), Positives = 243/414 (58%), Gaps = 5/414 (1%)
Query: 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYA 110
SW + +++ + E F + G+ + ITL+ L S CA E +G ++H YA
Sbjct: 31 SWTSRITLLSRNGRLAEAAKEFTAMRLAGVEPNHITLIALLSGCADCEP--FGDSLHGYA 88
Query: 111 TKVGLEY-MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169
K+GL+ + + A+L MY+K + +A +FD + +N V+ N +I+GY+ VD
Sbjct: 89 CKLGLDRNQVMVGTAILGMYSKRRRFRKARLVFDRV-EDKNSVTWNTMIDGYMRSGRVDD 147
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A +VFDE+ ++D++ W +M++G VK EEAL F++M GV PD +++ L+AC++
Sbjct: 148 AAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVKPDYVAVIAALAACAN 207
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
L L +G VHRF++ + + V +LID+Y +CG +E A F + + + VV+W ++
Sbjct: 208 LGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEMEKRTVVSWNSV 267
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I G A G +E+L F +M+ + KP+ TF L AC H GL+ EG + F M YR
Sbjct: 268 IVGFAANGHAHESLVYFRRMQEERFKPDAVTFTGALTACSHVGLVEEGVRYFEAMKRDYR 327
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY-SEFDLGKKV 408
+ P IEH+ CLVDL SRAG L +A + ++ MP + + +LL+AC T+ ++ +L +++
Sbjct: 328 ISPRIEHYGCLVDLYSRAGRLEEALKVVESMPMKPNEVVIGSLLAACRTHGNDTELAERM 387
Query: 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ +L + H YV+LSN YA +G W ++ RR MK L +K+PG S I++
Sbjct: 388 MKRLSELKVKGHSNYVILSNMYAADGQWEGASKMRRKMKGLGLKKQPGFSSIEI 441
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 134/326 (41%), Gaps = 73/326 (22%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSG---EVLIL 71
D + N++I Y R DA +FD+MP RD+ SW ++ N F G E L
Sbjct: 126 DKNSVTWNTMIDGYMRSGRVDDAAKVFDEMPERDLISWTAMI---NGFVKKGLHEEALAW 182
Query: 72 FKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK 131
F+++ G+ D + ++ +ACA L L +G VH + + + + N+L+ +Y +
Sbjct: 183 FREMQVSGVKPDYVAVIAALAACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCR 242
Query: 132 CKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHG 191
C ++ A ++FDEM +R +VS W S++ G
Sbjct: 243 CGCVEFARQVFDEM-EKRTVVS-------------------------------WNSVIVG 270
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQ 250
E+L F++M +E PD L+ACS + ++ G R I+
Sbjct: 271 FAANGHAHESLVYFRRMQEERFKPDAVTFTGALTACSHVGLVEEGVRYFEAMKRDYRISP 330
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
L+D+YS+ G LEEAL ++E +
Sbjct: 331 RIEHYGCLVDLYSRAGRLEEAL---------------KVVESMP---------------- 359
Query: 311 RKGIKPNEATFVSVLAACRHSGLITE 336
+KPNE S+LAACR G TE
Sbjct: 360 ---MKPNEVVIGSLLAACRTHGNDTE 382
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 7/161 (4%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H V +++ V NSLI Y R AR +FD+M R V SWN+++ +
Sbjct: 214 GLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEMEKRTVVSWNSVIVGFAA 273
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L+ F+++ E D +T +AC+ + + G Y + +Y ++
Sbjct: 274 NGHAHESLVYFRRMQEERFKPDAVTFTGALTACSHVGLVEEGVR---YFEAMKRDYRISP 330
Query: 122 E----NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
L+ +Y++ ++EAL++ + M + N V + L+
Sbjct: 331 RIEHYGCLVDLYSRAGRLEEALKVVESMPMKPNEVVIGSLL 371
>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 889
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 145/464 (31%), Positives = 247/464 (53%), Gaps = 2/464 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LHA V ++ D YV ++++ Y + F +AR +F + R+ SW L+ +
Sbjct: 313 GKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQ 372
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L LF Q+ E + D+ L + S C+ + + +H + K G + +
Sbjct: 373 YGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVI 432
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ MYAKC + A +F M R+IVS ++ Y + + ARE FD + ++
Sbjct: 433 SNSLISMYAKCGNLQNAESIFSSM-EERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRN 491
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ W +M+ ++ E+ L+++ M+ E V PD V++ C+ + + G +
Sbjct: 492 VITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQIT 551
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ + D V A+I MYSKCG + EA F KD+V+W MI G + +G+G
Sbjct: 552 GHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGK 611
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+A+ +F M +KG KP+ ++V+VL++C HSGL+ EG F + + V P +EHF C+
Sbjct: 612 QAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCM 671
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL+RAG L +A+ I MP + + ALLSAC T+ +L + A ++ L +
Sbjct: 672 VDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSPDS 731
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
Y+LL+ YA G + A+ R+ M++ +K PG S +++K+
Sbjct: 732 GGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKN 775
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/421 (25%), Positives = 204/421 (48%), Gaps = 30/421 (7%)
Query: 5 LHAHVTKTAL------------DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSW 52
LHA+++ AL + ++ N +++ Y ++ +DA LF +MP RDV SW
Sbjct: 70 LHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSW 129
Query: 53 NTLMSIY---NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCY 109
NTLMS Y F D+ E + ++ + + T +C L +
Sbjct: 130 NTLMSGYYQSGRFLDAMESFVSMRR--SGDSLPNAFTFGCAMKSCGALGWHEVALQLLGL 187
Query: 110 ATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169
TK G + ++ ++ M+ +C +D A + F ++ R + N ++ GY VD
Sbjct: 188 LTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQI-ERPTVFCRNSMLAGYAKSYGVDH 246
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A E+F+ + ++D+V W M+ ++ + EAL + M + GV D S L+AC+
Sbjct: 247 ALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAK 306
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
LS+L +G+ +H ++++ D +V +A++++Y+KCG +EA F ++ V+WT +
Sbjct: 307 LSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVL 366
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I G YG +E+L +F QM + + ++ ++++ C + + C L R++ +
Sbjct: 367 IGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNR---MDMC-LARQLHSLSL 422
Query: 350 VQPTIEHFV---CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF-DLG 405
V L+ + ++ G L AE M D +S+ +L+A YS+ ++G
Sbjct: 423 KSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERD-IVSWTGMLTA---YSQVGNIG 478
Query: 406 K 406
K
Sbjct: 479 K 479
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 147/344 (42%), Gaps = 46/344 (13%)
Query: 107 HCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMEL 166
H VGL + ++N LL Y C + +A L + N+++ NI++NGY +
Sbjct: 51 HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGS 110
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT-PDEEVMVSVLS 225
+ A E+F + +D+ W ++M G ++ + +A+E F M G + P+ +
Sbjct: 111 LSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMK 170
Query: 226 ACSSLS----NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS-------------- 267
+C +L LQ L+ +F Q D V T ++DM+ +CG+
Sbjct: 171 SCGALGWHEVALQLLGLLTKFGFQG----DPDVATGIVDMFVRCGAVDFASKQFSQIERP 226
Query: 268 -----------------LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
++ AL F +DVV+W M+ L+ G EAL V M
Sbjct: 227 TVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMH 286
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAG 368
+G++ + T+ S L AC + G QL + V R P I+ +V +V+L ++ G
Sbjct: 287 NRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQ---VIRSLPCIDPYVASAMVELYAKCG 343
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
+A + + +S+ L+ + Y F ++ N M
Sbjct: 344 CFKEARRVFSSLRDRNT-VSWTVLIGGFLQYGCFSESLELFNQM 386
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 133/304 (43%), Gaps = 65/304 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ + LH+ K+ + + NSLI Y + +A +F M RD+ SW +++ Y+
Sbjct: 413 LARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYS 472
Query: 61 DFSDSGEV-------------------------------LILFKQLIFE-GIVADKITLV 88
+ G+ L ++ ++ E ++ D +T V
Sbjct: 473 QVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYV 532
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
LF CA + G + + KVGL ++ NA++ MY+KC + EA ++FD + SR
Sbjct: 533 TLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFL-SR 591
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+++VS N +I GY HG K +A+E+F M
Sbjct: 592 KDLVSWNAMITGY--------------------------SQHGMGK-----QAIEIFDDM 620
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGS 267
+ +G PD V+VLS+CS +Q G+ + ++ N++ + ++D+ ++ G+
Sbjct: 621 LKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGN 680
Query: 268 LEEA 271
L EA
Sbjct: 681 LIEA 684
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 13/184 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G + H K L D V N++I Y + ++AR +FD + +D+ SWN +++ Y+
Sbjct: 546 LGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYS 605
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK-----TVHCYATKVGL 115
+ + +F ++ +G D I+ V + S+C+ + GK + GL
Sbjct: 606 QHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGL 665
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDL-AR 171
E+ M + L A+ + EA L DEM + L++ + + EL +L A+
Sbjct: 666 EHFSCMVDLL----ARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAK 721
Query: 172 EVFD 175
+FD
Sbjct: 722 HLFD 725
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 245/463 (52%), Gaps = 6/463 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD--ARVLFDKMPFRDVGSWNTLMSIYN 60
K +H HV + LD Y+ LI ++ + D AR + + + FR+ W ++ Y
Sbjct: 66 KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYA 125
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E + ++ + E I T L AC ++ L+ G+ H ++ +
Sbjct: 126 IEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVY 185
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N ++ MY KC+ +D A ++FDEM R+++S LI Y + ++ A E+F+ + K
Sbjct: 186 VGNTMIDMYVKCESIDCARKVFDEM-PERDVISWTELIAAYARVGNMECAAELFESLPTK 244
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ G + +P+EALE F +M G+ DE + +SAC+ L +Y
Sbjct: 245 DMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAV 304
Query: 241 RFILQNNITQD--AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+ ++ + + +ALIDMYSKCG++EEA+ F + K+V T+++MI GLA +G
Sbjct: 305 QIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGR 364
Query: 299 GNEALRVF-YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F Y + + IKPN TFV L AC HSGL+ +G Q+F M + VQPT +H+
Sbjct: 365 AQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHY 424
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL R G L +A E IK M E + ALL AC ++ ++ + A ++ +L
Sbjct: 425 TCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEP 484
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
Y+LLSN YA G W V R+ +KE +K P S +
Sbjct: 485 DIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWV 527
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 130/309 (42%), Gaps = 71/309 (22%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G+ HA + +YVGN++I Y + AR +FD+MP RDV SW L++ Y
Sbjct: 167 LGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYA 226
Query: 60 ---------------------------NDFSDSG---EVLILFKQLIFEGIVADKITLVI 89
F+ + E L F ++ GI AD++T+
Sbjct: 227 RVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAG 286
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYM--LNMENALLLMYAKCKEMDEALRLFDEMGS 147
SACA+L Y A K G + + +AL+ MY+KC ++EA+ +F
Sbjct: 287 YISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVF----- 341
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
+S+N +K++ + SM+ G + +EAL LF
Sbjct: 342 ----MSMN-----------------------NKNVFTYSSMILGLATHGRAQEALHLFHY 374
Query: 208 MIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN---NITQDAFVKTALIDMYS 263
M+ + + P+ V L ACS + GR V + Q T+D + T ++D+
Sbjct: 375 MVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHY--TCMVDLLG 432
Query: 264 KCGSLEEAL 272
+ G L+EAL
Sbjct: 433 RTGRLQEAL 441
>gi|449456490|ref|XP_004145982.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Cucumis sativus]
Length = 710
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 164/558 (29%), Positives = 264/558 (47%), Gaps = 95/558 (17%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD------------------- 42
GK H V K+ L VG++L++FY + + A+ +FD
Sbjct: 122 GKQFHCLVLKSGLQIFERVGSALVYFYANINDISGAKQVFDELHDKNDLLWDLLLVGYVK 181
Query: 43 ------------KMPFRDVGSWNTLMSIY-NDFSDSGEVLILFKQLIFEGIV-ADKITLV 88
K+P RDV +W T++S Y + L LF + G V ++ T
Sbjct: 182 CNLMDDALDLFMKIPTRDVVAWTTMISAYARSEHNCKRGLELFCSMRMNGEVEPNEFTFD 241
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS- 147
+ AC R+ L +GK VH TK G + ++ +AL+L Y +C+ +D A ++D M
Sbjct: 242 SVVRACGRMRYLSWGKVVHGILTKYGFHFDHSVCSALILFYCQCEAIDNAKAVYDSMERP 301
Query: 148 -----------------------------RRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+N VS N+++ GY ++ ++ +F+ +
Sbjct: 302 CLKASNSLLEGLIFAGRINDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMT 361
Query: 179 DK--------------------------------DIVLWRSMMHGCVKAKQPEEALELFK 206
K D V W SM+ GC++ Q E AL+L+
Sbjct: 362 HKTTSSLNTMISVYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGCIQNHQHEGALKLYI 421
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
M V ++ AC+ L +Q G+ +H ++ + +V T+LIDMY+KCG
Sbjct: 422 TMCRTSVERSRSTFSALFQACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCG 481
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
S+ +A +F +V +T +I G ++GLG EA VF +M + + PN AT + +L+
Sbjct: 482 SIYDAQTSFASVCFPNVAAFTALINGYVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILS 541
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC +G++ EG +F M Y V PT+EH+ C+VDLL R+G LY+AE FI+ MP E
Sbjct: 542 ACSCAGMVKEGMTVFHSMEKCYGVIPTLEHYACVVDLLGRSGRLYEAEAFIRCMPIEADR 601
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
+ + ALL+AC + + +LG+ VA ++ L ++ AY++LSN YA G W E RR +
Sbjct: 602 VIWGALLNACWFWMDLELGESVAKKVLSLDPKAISAYIILSNIYAKLGKWVEKINVRRQL 661
Query: 447 KELQTRKKPGNSIIDLKH 464
L+ +K G S ID+ +
Sbjct: 662 MSLKVKKIRGCSWIDVNN 679
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 193/397 (48%), Gaps = 18/397 (4%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+GLH +S+I N I + R A+ LF++MP R V SWN ++S Y+ F
Sbjct: 28 EGLHTE------NSNIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKF 81
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
E L L ++ + ++ T L S CA GK HC K GL+ +
Sbjct: 82 GKYSEALNLASEMHCNNVKLNETTFSSLLSICAHSGCSSEGKQFHCLVLKSGLQIFERVG 141
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
+AL+ YA ++ A ++FDE+ + +++ ++L+ GY+ L+D A ++F +I +D+
Sbjct: 142 SALVYFYANINDISGAKQVFDELHDKNDLL-WDLLLVGYVKCNLMDDALDLFMKIPTRDV 200
Query: 183 VLWRSMMHGCVKAKQP-EEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
V W +M+ +++ + LELF M G V P+E SV+ AC + L +G++VH
Sbjct: 201 VAWTTMISAYARSEHNCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVH 260
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + D V +ALI Y +C +++ A + + + +++EGL G N
Sbjct: 261 GILTKYGFHFDHSVCSALILFYCQCEAIDNAKAVYDSMERPCLKASNSLLEGLIFAGRIN 320
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+A +F ++ K N ++ +L SG I +LF RM T +
Sbjct: 321 DAEEIFCKLREK----NPVSYNLMLKGYATSGRIEGSKRLFERM-----THKTTSSLNTM 371
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
+ + SR G + +A + + + +E +++ +++S CI
Sbjct: 372 ISVYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGCI 408
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH H + A DS++YVG SLI Y + DA+ F + F +V ++ L++ Y
Sbjct: 450 LGQALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSFASVCFPNVAAFTALINGYV 509
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-----HCYATKVGL 115
E +F +++ + + TL+ + SAC+ + G TV CY L
Sbjct: 510 HHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEKCYGVIPTL 569
Query: 116 EY 117
E+
Sbjct: 570 EH 571
>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
Length = 632
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 157/465 (33%), Positives = 259/465 (55%), Gaps = 17/465 (3%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGR-----MALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+H + + SD++V N+L+ Y R AR +FD+M +DV SWN+++ +Y
Sbjct: 132 VHGQIVRCGFGSDVFVQNALMDVYYRCGGGGAGGVGAARQVFDEMVDKDVVSWNSIVGVY 191
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYM 118
D+ + LF+ + +V+ T+V F AR + +TV ++ + +
Sbjct: 192 MSSGDATGAMGLFEAMPERNVVSWN-TVVAGF---ARTGDMVTARTVFDRMPSRNAVSW- 246
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
N ++ YA +++ A +FD M ++++VS +++ Y + +D A+E+FD +
Sbjct: 247 ----NLMISGYATSGDVEAARSVFDRM-DQKDVVSWTAMVSAYAKIGDLDTAKELFDHMP 301
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGR 237
K++V W +M+ G + +EAL F+ M+ EG PDE +VSV+SAC+ L +++Y
Sbjct: 302 VKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCN 361
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+ FI ++N + ALIDM++KCG + A FYK + + ++TWTTMI G A G
Sbjct: 362 WISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNG 421
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
L EAL V+ M R+G++ + F++ LAAC H GL+ EG +F M Y +QP +EH+
Sbjct: 422 LCREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQEGWSIFNEMVEQYNIQPRMEHY 481
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RAG L +A FI+ MP E + + LLS+C+ + +L + V+ + +L
Sbjct: 482 GCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLSSCVAHGNAELIEYVSKKITELEP 541
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ VL+SN ALEG W V AR +M+ K PG+S+I +
Sbjct: 542 FNSSYQVLVSNCSALEGRWDGVIGARTSMRNWGIEKVPGSSLIQV 586
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 100/259 (38%), Gaps = 46/259 (17%)
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
+ M +GV P+ +L AC+ L + VH I++ D FV+ AL+D+Y +
Sbjct: 98 YVAMRAQGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYYR 157
Query: 265 C------------------------------------GSLEEALVTFYKTDCKDVVTWTT 288
C G A+ F ++VV+W T
Sbjct: 158 CGGGGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNT 217
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
++ G A G A VF +M + N ++ +++ SG + +F RM
Sbjct: 218 VVAGFARTGDMVTARTVFDRMPSR----NAVSWNLMISGYATSGDVEAARSVFDRMD--- 270
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
Q + + +V ++ G L A+E MP ++ +S+ A+++ S +D +
Sbjct: 271 --QKDVVSWTAMVSAYAKIGDLDTAKELFDHMPVKN-LVSWNAMITGYNHNSRYDEALRT 327
Query: 409 ANNMMKLGNQSHEAYVLLS 427
MM G + L+S
Sbjct: 328 FQLMMLEGRFRPDEATLVS 346
>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
Length = 1091
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 145/462 (31%), Positives = 242/462 (52%), Gaps = 33/462 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + KT L + + N+L+ Y + + +F M ++V SW +++ Y
Sbjct: 537 GRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMR 596
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+V L ++++ +GI D + A A E L GK+VH Y + G+E +L +
Sbjct: 597 AGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPV 656
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC+ ++EA R +FD + +KD
Sbjct: 657 ANALMEMYVKCRNVEEA--------------------------------RLIFDRVTNKD 684
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++ W +++ G + P E+ LF M+ + P+ M +L A +S+S+L+ GR +H
Sbjct: 685 VISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHA 743
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ L+ +D++ AL+DMY KCG+L A V F + K++++WT MI G +G G
Sbjct: 744 YALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKH 803
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ +F QM GI+P+ A+F ++L AC HSGL EG + F+ M Y+++P ++H+ C+V
Sbjct: 804 AIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIV 863
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLLSR G L +A EFI+ MP E + +LL C + L +KVA+ + KL ++
Sbjct: 864 DLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTG 923
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVLL+N YA W V + + + R+ G S I+++
Sbjct: 924 YYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVR 965
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 162/342 (47%), Gaps = 45/342 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + K L V N+LI Y R DA +FD M RD SWN++ I
Sbjct: 223 GEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSM--IGGC 280
Query: 62 FSDS--GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
FS+ G + LF ++ +G +T++ + ACA L GK VH Y+ K GL + L
Sbjct: 281 FSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGL 340
Query: 120 N----------MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169
+ + + L+ MY KC +M A R+FD M S+ N
Sbjct: 341 DSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGN------------------- 381
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
+ +W +M G K + EE+L LF +M + G+ PDE + +L +
Sbjct: 382 ------------VHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITC 429
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
LS + G + H +I++ V ALI Y+K + +A++ F + +D ++W ++
Sbjct: 430 LSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSV 489
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
I G ++ GL +EA+ +F +M +G + + T +SVL AC S
Sbjct: 490 ISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQS 531
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 171/397 (43%), Gaps = 61/397 (15%)
Query: 20 VGNSLIHFYGRMALFTDARVLFDKMPFR--DVGSWNTLMSIYNDFSDSGEVLILFKQLIF 77
+G L+ Y + +AR +FD MP + DV W +LMS Y D E + LF+Q+
Sbjct: 138 LGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQC 197
Query: 78 EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDE 137
G+ D + + + L L G+ +H K+GL + NAL+ +Y++C M++
Sbjct: 198 CGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMED 257
Query: 138 ALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ 197
A R+FD M R D + W SM+ GC
Sbjct: 258 AARVFDSMHPR--------------------------------DAISWNSMIGGCFSNGW 285
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI--------- 248
A++LF KM +G ++SVL AC+ L G+ VH + +++ +
Sbjct: 286 HGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQS 345
Query: 249 -TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVF 306
DA + + L+ MY KCG + A F K +V W ++ G A G E+L +F
Sbjct: 346 GIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLF 405
Query: 307 YQMERKGIKPNEATFVSVLA-----ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC-- 359
QM GI P+E +L +C GL+ G + ++ + VC
Sbjct: 406 VQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGY--------IVKLGFGAQCAVCNA 457
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
L+ +++ ++ A MP +D IS+ +++S C
Sbjct: 458 LISFYAKSNMIGDAVLVFNRMPRQDT-ISWNSVISGC 493
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 86/225 (38%), Gaps = 16/225 (7%)
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT----QDAFVKTALIDMYSKC 265
D GV MV L C +L+ + H I ++ + + + L+ Y KC
Sbjct: 92 DGGVDVRSYCMVVQL--CGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKC 149
Query: 266 GSLEEALVTF--YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
G L EA F DV WT+++ A G EA+ +F QM+ G+ P+
Sbjct: 150 GDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSC 209
Query: 324 VLAACRHSGLITEG---CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
VL G +TEG L ++G + L+ + SR G + A M
Sbjct: 210 VLKCVSSLGSLTEGEVIHGLLEKLG----LGQACAVANALIAVYSRCGRMEDAARVFDSM 265
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425
D IS+ +++ C + + + M G + VL
Sbjct: 266 HPRDA-ISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVL 309
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 243/461 (52%), Gaps = 41/461 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +H+HV K D YVGN+LI Y + F DA +F++MP RD SWN+ M+
Sbjct: 173 RAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAA---- 228
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
++ +G VA SA +++ TV
Sbjct: 229 ------------MVRQGEVA---------SARRMFDEMPDKDTVSW-------------- 253
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N +L Y K +M++A LF M RN+VS + +++GY +++AR +FD++ K++
Sbjct: 254 NTVLDGYTKAGKMEDAFELFQCM-PERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNL 312
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W M+ C + EEA LF +M + V D +VS+L+AC+ +L G+ +HR+
Sbjct: 313 VTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRY 372
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTF-YKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + V A+IDM+ KCG + A F + KD V+W T+I G A +G G++
Sbjct: 373 VRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDK 432
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL F QM+ +G +P+ T ++VL+AC H G + EG Q F M Y + P IEH+ C++
Sbjct: 433 ALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCMI 492
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL R GL+ +A IK MP + + + +LLSAC + + + N + KL +
Sbjct: 493 DLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAG 552
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y +LSN YA G W+++A+AR MK ++K G+S I+L
Sbjct: 553 NYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSAGSSWIEL 593
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 110/403 (27%), Positives = 169/403 (41%), Gaps = 52/403 (12%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSW--NTLMSIYNDF 62
LHA + K L D + LI Y +R +F P ++ NTL+ Y
Sbjct: 77 LHAQLLKHGLHLDPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYALN 136
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ + LF + D T L A + L + VH + K+G +
Sbjct: 137 ALPHAAVSLFSAMPQR----DSFTYSFLIKALSS-SGLTPLRAVHSHVVKLGSIEDTYVG 191
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
NAL+ Y+K +A ++F+EM RR+ VS N + + V AR +FDE+ DKD
Sbjct: 192 NALIDAYSKNGGFLDASKVFEEM-PRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDT 250
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +++ G KA + E+A ELF+ M + V S S + G
Sbjct: 251 VSWNTVLDGYTKAGKMEDAFELFQCMPERNVV--------------SWSTVVSG------ 290
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
Y K G +E A V F K K++VTWT M+ A GL EA
Sbjct: 291 -------------------YCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEA 331
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC--L 360
R+F QM+ ++ + A VS+LAAC SG + G ++ R V Q VC +
Sbjct: 332 GRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRY---VRTRQLGRSTHVCNAM 388
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
+D+ + G + +A+ AE +S+ ++ + D
Sbjct: 389 IDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGD 431
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD-KMPFRDVGSWNTLMSIY 59
+GK +H +V L +V N++I + + A +FD ++ +D SWNT++ +
Sbjct: 365 LGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGF 424
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
+ L F Q+ +G D +T++ + SAC + + G+
Sbjct: 425 AMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGR 469
>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 760
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 157/503 (31%), Positives = 258/503 (51%), Gaps = 40/503 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVG---------- 50
+GK +H + LD D +V S+ H Y R DAR +FD+M +DV
Sbjct: 134 VGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYA 193
Query: 51 -------------------------SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKI 85
SWN ++S +N E +++F+++ G D++
Sbjct: 194 RKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQV 253
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T+ + + E L+ G+ +H Y K GL + +A++ MY K + + LF++
Sbjct: 254 TVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQF 313
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFD----EIVDKDIVLWRSMMHGCVKAKQPEEA 201
V N I G LVD A E+F+ + ++ ++V W S++ GC + + EA
Sbjct: 314 EMMEAGVC-NAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEA 372
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
LELF++M GV P+ + S+L AC +++ L +GR H F ++ ++ + V +ALIDM
Sbjct: 373 LELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDM 432
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y+KCG + + + F K++V W +++ G + +G E + +F + R +KP+ +F
Sbjct: 433 YAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISF 492
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
S+L+AC GL EG + F+ M Y ++P +EH+ C+V+LL RAG L +A + IK MP
Sbjct: 493 TSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMP 552
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
E + ALL++C + DL + A + L ++ YVLLSN YA +G WTEV
Sbjct: 553 FEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDS 612
Query: 442 ARRNMKELQTRKKPGNSIIDLKH 464
R M+ L +K PG S I +K+
Sbjct: 613 IRNKMESLGLKKNPGCSWIQVKN 635
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 212/475 (44%), Gaps = 75/475 (15%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HA + K+ +D Y+ LI Y F DA ++ +P + S+++L+
Sbjct: 38 HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
+ + +F ++ G++ D L LF CA L GK +HC + GL+ ++ ++
Sbjct: 98 TQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSM 157
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM----ELVDLAREVFDEIVDKD 181
MY +C M +A ++FD M S +++V+ + L+ Y E+V + E+ ++ +
Sbjct: 158 FHMYMRCGRMGDARKVFDRM-SDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W ++ G ++ +EA+ +F+K+ G PD+ + SVL + L GRL+H
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHG 276
Query: 242 FILQNNITQDAFVKTALIDMYSKCGS-------------LEEALVTFYKTDCK------- 281
++++ + +D V +A+IDMY K G +E + Y T
Sbjct: 277 YVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDK 336
Query: 282 ---------------DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+VV+WT++I G A G EAL +F +M+ G+KPN T S+L
Sbjct: 337 ALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLP 396
Query: 327 ACRHSGLITEG----------------------CQLFRRMGG------VYRVQPTIEHFV 358
AC + + G ++ + G V+ + PT ++ V
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPT-KNLV 455
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPA------EDKFISYKALLSACITYSEFDLGKK 407
C L++ + +A+E + I + + FIS+ +LLSAC D G K
Sbjct: 456 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWK 510
>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 148/468 (31%), Positives = 250/468 (53%), Gaps = 36/468 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMAL---FTDARVLFDKMPFRDVGSWNTLMS 57
+GK LH+ V + L D+ VG SL+ Y + A D+R +F++MP +V SW +++
Sbjct: 267 LGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIIT 326
Query: 58 IYNDFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
Y + E + LF ++I I + + + AC L + G+ V+ YA K+G+
Sbjct: 327 AYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIA 386
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + N+L+ MYA+ M++A R+ FD
Sbjct: 387 SVNCVGNSLISMYARSGRMEDA--------------------------------RKAFDI 414
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ +K++V + +++ G K + EEA LF ++ D G+ S+LS +S+ + G
Sbjct: 415 LFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKG 474
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+H +L+ + + ALI MYS+CG++E A F + + ++V++WT+MI G A +
Sbjct: 475 EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKH 534
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G AL +F++M G KPNE T+V+VL+AC H G+I+EG + F M + + P +EH
Sbjct: 535 GFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEH 594
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL R+GLL +A EFI MP + ++ LL AC + +LG+ A +++
Sbjct: 595 YACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQE 654
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
AY+LLSN +A G W +V + R++MKE K+ G S I++++
Sbjct: 655 PDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVEN 702
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 208/426 (48%), Gaps = 38/426 (8%)
Query: 1 MGKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMAL-FTDARVLFDKMPFRDVGSWNTLMSI 58
+G+ ++ V KT L++D+ VG LI + + + A +FDKMP R++ +W +++
Sbjct: 164 VGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITR 223
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ + + + LF + G V D+ T + SAC L L GK +H ++GL
Sbjct: 224 FAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALD 283
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + +L+ MYAKC GS VD +R+VF+++
Sbjct: 284 VCVGCSLVDMYAKCAAD----------GS-------------------VDDSRKVFEQMP 314
Query: 179 DKDIVLWRSMMHGCVKAKQ-PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+ +++ W +++ V++ + +EA+ELF KMI + P+ SVL AC +LS+ G
Sbjct: 315 EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGE 374
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
V+ + ++ I V +LI MY++ G +E+A F K++V++ +++G A
Sbjct: 375 QVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNL 434
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR-MGGVYRVQPTIEH 356
EA +F ++ GI + TF S+L+ G + +G Q+ R + G Y+ I +
Sbjct: 435 KSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICN 494
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDK-FISYKALLSACITYSEFDLGKKVANNMMKL 415
L+ + SR G + A + M ED+ IS+ ++++ + ++ + M++
Sbjct: 495 --ALISMYSRCGNIEAAFQVFNEM--EDRNVISWTSMITGFAKHGFATRALEMFHKMLET 550
Query: 416 GNQSHE 421
G + +E
Sbjct: 551 GTKPNE 556
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 151/330 (45%), Gaps = 46/330 (13%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D T IL +C R GK VH + GLE + N L+ +Y+KC + + A +F
Sbjct: 43 DLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIF 102
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
+ MG++R D+V W +M+ +A+
Sbjct: 103 EGMGNKR-------------------------------DLVSWSAMVSCFANNSMEWQAI 131
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN-ITQDAFVKTALIDM 261
F M++ G P+E +V+ ACS+ + G +++ F+++ + D V LIDM
Sbjct: 132 WTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDM 191
Query: 262 YSK-CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
+ K G L A F K +++VTWT MI A G +A+ +F ME G P+ T
Sbjct: 192 FVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFT 251
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRA---GLLYQA 373
+ SVL+AC GL+ G QL R V R+ ++ VC LVD+ ++ G + +
Sbjct: 252 YSSVLSACTELGLLALGKQLHSR---VIRLGLALD--VCVGCSLVDMYAKCAADGSVDDS 306
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFD 403
+ + MP E +S+ A+++A + E D
Sbjct: 307 RKVFEQMP-EHNVMSWTAIITAYVQSGECD 335
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 112/253 (44%), Gaps = 38/253 (15%)
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
A M + PD +L +C N Q G+LVHR ++Q+ + D+ V LI
Sbjct: 28 AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 87
Query: 261 MYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
+YSKCG E A + F K D+V+W+ M+ AN + +A+ F M G PNE
Sbjct: 88 LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 147
Query: 320 TFVSVLAACRHS----------GLITE----------GCQLFR-------RMGGVYRVQP 352
F +V+ AC ++ G + + GC+L +G Y+V
Sbjct: 148 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 207
Query: 353 TI--EHFVCLVDLLSRAGLLYQAEEFIKIMP-------AEDKFISYKALLSACITYSEFD 403
+ + V +++R L A + I + D+F +Y ++LSAC
Sbjct: 208 KMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRF-TYSSVLSACTELGLLA 266
Query: 404 LGKKVANNMMKLG 416
LGK++ + +++LG
Sbjct: 267 LGKQLHSRVIRLG 279
>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g13650-like [Cucumis sativus]
Length = 1037
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 149/464 (32%), Positives = 248/464 (53%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H HV KT ++YV + LI Y + A + ++P DV SW +++ Y
Sbjct: 481 LGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYV 540
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF+++ + GI D I SACA + L G+ +H + G L+
Sbjct: 541 QHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLS 600
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ +YA+C + EA F+++G DK
Sbjct: 601 INNALISLYARCGRIQEAYLAFEKIG--------------------------------DK 628
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ + W S++ G ++ EEAL++F +M+ + S +SA +SL+N++ G+ +H
Sbjct: 629 NNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIH 688
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+L+ + V +LI +Y+K GS+ +A F ++V++W MI G + +G G
Sbjct: 689 SMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGM 748
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EALR+F +M+ GI PN TFV VL+AC H GL+ EG F M ++ + P EH+VC+
Sbjct: 749 EALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCV 808
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +A E+IK MP + ++ LLSAC+ + ++G++ A+++++L +
Sbjct: 809 VDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDS 868
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVL+SN YA+ W +R+ MK+ +K+PG S I++K+
Sbjct: 869 ATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKN 912
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 201/418 (48%), Gaps = 42/418 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G+ LH V K S+ YV N L+ Y R A +F M RD S+N+L+S +
Sbjct: 279 LGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLV 338
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
FSD L LF ++ + + D IT+ L SACA + LH G +H +A K G+
Sbjct: 339 QQGFSD--RALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSAD 396
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ +E +LL +Y+KC +++ A + F L E
Sbjct: 397 IILEGSLLDLYSKCADVETAHKFF--------------------------LXTET----- 425
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++IVLW M+ + ++ E+F++M EG+ P++ S+L C+SL L G
Sbjct: 426 -ENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H +++ + +V + LIDMY+K G L AL + DVV+WT MI G + +
Sbjct: 485 IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDM 544
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF-RRMGGVYRVQPTIEHF 357
+EAL++F +ME +GI+ + F S ++AC + +G Q+ + + +I +
Sbjct: 545 FSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINN- 603
Query: 358 VCLVDLLSRAGLLYQAE-EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
L+ L +R G + +A F KI + IS+ +L+S F+ +V M++
Sbjct: 604 -ALISLYARCGRIQEAYLAFEKI--GDKNNISWNSLVSGLAQSGYFEEALQVFVRMLR 658
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 186/402 (46%), Gaps = 38/402 (9%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H+ DS V N LI Y + A+ +F+ + +D+ +W ++S +
Sbjct: 180 KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQN 239
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
E ++LF + I L + SA +++ G+ +HC K G +
Sbjct: 240 GLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVC 299
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N L+ +Y++ +++ A R+F M SR D
Sbjct: 300 NGLVALYSRSRKLISAERIFSTMNSR--------------------------------DG 327
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V + S++ G V+ + ALELF KM + + PD + S+LSAC+S+ L G +H
Sbjct: 328 VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSH 387
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
++ ++ D ++ +L+D+YSKC +E A F T+ +++V W M+ +++
Sbjct: 388 AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDS 447
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC--L 360
+F QM+ +G+ PN+ T+ S+L C G + G Q+ V + + +VC L
Sbjct: 448 FEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTH---VIKTGFQLNVYVCSVL 504
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
+D+ ++ G L A ++ +P ED +S+ A+++ + + F
Sbjct: 505 IDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQHDMF 545
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 159/337 (47%), Gaps = 33/337 (9%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LH ++K+ D + + +SL+ Y R A +FD+ R V SWN ++ ++
Sbjct: 80 LHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKS 139
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLE-KLHYGKTVHCYATKVGLEYMLNMEN 123
+ +V LF++++ EGI + T + AC + +Y K VH G + + N
Sbjct: 140 NFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVAN 199
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
L+ +Y+K NGYI+ A++VF+ I KDIV
Sbjct: 200 LLIDLYSK---------------------------NGYIES-----AKKVFNCICMKDIV 227
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W +M+ G + EEA+ LF M + P V+ SVLSA + + + G +H +
Sbjct: 228 TWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLV 287
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++ + +V L+ +YS+ L A F + +D V++ ++I GL G + AL
Sbjct: 288 IKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRAL 347
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
+F +M+R +KP+ T S+L+AC G + +G QL
Sbjct: 348 ELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQL 384
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 105/231 (45%), Gaps = 7/231 (3%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A +VFDE ++ + W M+H V K + LF++M+ EG+TP+ VL AC
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171
Query: 230 LS-NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
Y + VH V LID+YSK G +E A F KD+VTW
Sbjct: 172 GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
MI GL+ GL EA+ +F M I P SVL+A L G QL V
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCL---VI 288
Query: 349 RVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
+ E +VC LV L SR+ L AE M + D +SY +L+S +
Sbjct: 289 KWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDG-VSYNSLISGLV 338
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 1/194 (0%)
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
++L M + GV + + + +L C + +L +H I ++ + + +L+D
Sbjct: 43 IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y + G A+ F + + V +W MI + +F +M +GI PN TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
VL AC + + Y + L+DL S+ G + A++ +
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222
Query: 382 AEDKFISYKALLSA 395
+D +++ A++S
Sbjct: 223 MKD-IVTWVAMISG 235
>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
Length = 957
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 159/461 (34%), Positives = 248/461 (53%), Gaps = 33/461 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HA+ K LDSD+ VGNSL+ Y + +FDKMP +DV SW T+++ +
Sbjct: 402 GMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQ 461
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
L LF+++ EGI D + + + AC+ L+ + K +H Y + GL ++ +
Sbjct: 462 NGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLV-L 520
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+N ++ +Y +C +D A R+F EL++ KD
Sbjct: 521 QNGIVDVYGECGNVDYAARMF----------------------ELIEF----------KD 548
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W SM+ V EALELF M + GV PD +VS+LSA +SLS L+ G+ +H
Sbjct: 549 VVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHG 608
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
F+++ + + + L+DMY++CG+LE++ F KD+V WT+MI +G G
Sbjct: 609 FLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRA 668
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ +F +ME + I P+ FV+VL AC HSGL+ EG + M Y+++P EH+ CLV
Sbjct: 669 AIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLV 728
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RA L +A +F+K M E + ALL AC +S +LG+ A ++++ ++
Sbjct: 729 DLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPG 788
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVL+SN Y+ E W +V R MK +K PG S I++
Sbjct: 789 NYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEV 829
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 166/341 (48%), Gaps = 34/341 (9%)
Query: 2 GKGLHAH-VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +HAH +T AL + +++ L+ YG+ DA LFD MP + + +WN ++ Y
Sbjct: 97 GQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYV 156
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L L++++ GI D T + AC L+ YG VH A K G ++
Sbjct: 157 TNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVF 216
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+++ MY KC ++ NG AR++FD + +K
Sbjct: 217 VANSIVGMYTKCNDL-----------------------NG---------ARQLFDRMPEK 244
Query: 181 -DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W SM+ Q EAL LF +M + P+ V+ L AC S ++ G +
Sbjct: 245 EDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFI 304
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +L+++ + FV ALI MY++ G + EA FY D D ++W +M+ G GL
Sbjct: 305 HATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLY 364
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
+EAL+ +++M G KP+ +S++AA SG G Q+
Sbjct: 365 HEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQI 405
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 116/233 (49%), Gaps = 8/233 (3%)
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS 225
LVD A ++FD + K I W +M+ V +P +LEL+++M G+ D +L
Sbjct: 130 LVD-AEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILK 188
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVV 284
AC L + +YG VH ++ FV +++ MY+KC L A F + K DVV
Sbjct: 189 ACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVV 248
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
+W +MI ++ G EALR+F +M++ + PN TFV+ L AC S I +G +
Sbjct: 249 SWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIH--- 305
Query: 345 GGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
V + I FV L+ + +R G + +A M D IS+ ++LS
Sbjct: 306 ATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDT-ISWNSMLSG 357
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 16/187 (8%)
Query: 217 EEVMVSVLSACSSLSNLQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
+E SVL C S L G+ VH I N + F+ T L+ MY KCG L +A F
Sbjct: 78 DEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLF 137
Query: 276 YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335
K + TW MI G +L ++ +M GI + TF +L AC GL+
Sbjct: 138 DGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC---GLLK 194
Query: 336 EGCQLFRRMGGVYRVQPTIEHFV-------CLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
+ RR G E +V +V + ++ L A + MP ++ +S
Sbjct: 195 D-----RRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVS 249
Query: 389 YKALLSA 395
+ +++SA
Sbjct: 250 WNSMISA 256
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 150/454 (33%), Positives = 240/454 (52%), Gaps = 35/454 (7%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99
+F ++P D WNT + + D + L+ Q+ + D T ++ AC +L
Sbjct: 63 MFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTKLFW 122
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM------------------------ 135
++ G VH ++G + + N LL+ +AKC ++
Sbjct: 123 VNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAG 182
Query: 136 -------DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
A +LFDEM +R++VS N++I Y ++ AR +FDE KD+V W +M
Sbjct: 183 YAQRGDLSVARKLFDEM-PKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAM 241
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ G V +EALELF +M + G PDE M+S+LSAC+ L + G VH I++ N
Sbjct: 242 VGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLLSACADLGDX--GEKVHAKIMELNK 299
Query: 249 TQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
+ + AL+DMY+KCG++ + + F+ KD+V+W ++I GLA +G E+L +F
Sbjct: 300 GKLSTLLGNALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFR 359
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367
+M+R + P+E TFV VLAAC H+G + EG + F M Y+++P I H C+VD+L+RA
Sbjct: 360 EMQRTKVCPDEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARA 419
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427
GLL +A +FI M E I +++LL AC + + +L K+ ++++ YVLLS
Sbjct: 420 GLLKEAFDFIASMKIEPNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVDQSGDYVLLS 479
Query: 428 NFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
N YA G W R+ M + K G+S ++
Sbjct: 480 NVYASHGEWDGAENVRKLMDDNGVTKTRGSSFVE 513
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 112/422 (26%), Positives = 174/422 (41%), Gaps = 97/422 (22%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D+ N +I Y + AR LFD+ P +DV SWN ++ Y + + E L LF ++
Sbjct: 203 DLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMC 262
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYA---TKVGLEYMLNMENALLLMYAKCK 133
G D++T++ L SACA L G+ VH K L +L NAL+ MYAKC
Sbjct: 263 EVGECPDEVTMLSLLSACADLGD--XGEKVHAKIMELNKGKLSTLLG--NALVDMYAKCG 318
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
+ + + VF I DKD+V W S++ G
Sbjct: 319 NIGKGV--------------------------------CVFWLIRDKDMVSWNSVIGGLA 346
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
EE+L LF++M V PDE V VL+ACS N+ G + ++++N +
Sbjct: 347 FHGHAEESLGLFREMQRTKVCPDEITFVGVLAACSHTGNVDEGNR-YFYLMKNKYKIEPN 405
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
++ CG + ++ LA GL EA M+
Sbjct: 406 IR--------HCGCV---------------------VDMLARAGLLKEAFDFIASMK--- 433
Query: 314 IKPNEATFVSVLAACRHSG---LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370
I+PN + S+L AC+ G L + RM RV + + +V L ++ + G
Sbjct: 434 IEPNAIVWRSLLGACKVHGDVELAKRATEQLLRM----RVDQSGD-YVLLSNVYASHGEW 488
Query: 371 YQAEEFIKIMP-----------------AEDKFISYKALLSACITYSEFDLGKKVANNMM 413
AE K+M E ++ + LL ACI Y + +L K+V ++
Sbjct: 489 DGAENVRKLMDDNGVTKTRGSSFVEAYRIEPNPVNGRTLLGACIVYGDVELAKRVNEELL 548
Query: 414 KL 415
+L
Sbjct: 549 RL 550
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 12/248 (4%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A ++F +I D +W + + G ++ P A+ L+ +M V PD VL AC+
Sbjct: 60 AVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTK 119
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
L + G +VH + + + V+ L+ ++KCG L+ A F +D DVV W+ +
Sbjct: 120 LFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSAL 179
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR--MGGV 347
I G A G + A ++F +M ++ + ++ ++ A G + +LF M V
Sbjct: 180 IAGYAQRGDLSVARKLFDEMPKRDL----VSWNVMITAYTKHGEMECARRLFDEAPMKDV 235
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK 407
+ +V L +L A L+ +E ++ D+ ++ +LLSAC D G+K
Sbjct: 236 VSWNAMVGGYV-LHNLNQEALELF--DEMCEVGECPDE-VTMLSLLSACADLG--DXGEK 289
Query: 408 VANNMMKL 415
V +M+L
Sbjct: 290 VHAKIMEL 297
>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 783
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 163/527 (30%), Positives = 263/527 (49%), Gaps = 71/527 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + +TA +SD V N+LI Y + + AR LFD M R++ SW T+++ Y
Sbjct: 257 GRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQ 316
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E + +F QL G D + ++C L + G+ VH + K LE +
Sbjct: 317 NSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYV 376
Query: 122 ENALLLM-------------------------------YAKCKEMDEALRLFDEM----- 145
+NAL+ M YA+ ++ A+ +F +M
Sbjct: 377 KNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSL 436
Query: 146 ---------------------------------GSRRNIVSLNILINGYIDMELVDLARE 172
G+ ++ + + LI+ Y LVD A+
Sbjct: 437 KPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKL 496
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
VF + ++D+V+W +M+ G + ++ EEA++LF ++ G+TP+E V++++ S+L++
Sbjct: 497 VFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVASTLAS 556
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
+ +G+ H I++ D + ALIDMY+KCG +EE + F T KDV+ W +MI
Sbjct: 557 IFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFESTLGKDVICWNSMIST 616
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
A +G EAL VF ME G++PN TFVSVL+AC H+GL+ EG F M Y V+P
Sbjct: 617 YAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEGLHHFNSMKTKYAVEP 676
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
EH+ +V+L R+G L+ A+EFI+ MP E +++LLSAC + ++G + A M
Sbjct: 677 GTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIWRSLLSACHLFGNVEIG-RYATEM 735
Query: 413 MKLGNQSHEA-YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNS 458
L + + VL+SN YA +G W + + R+ M K+PG S
Sbjct: 736 ALLADPADSGPSVLMSNIYASKGLWADAQKLRQGMDCAGVVKEPGYS 782
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/396 (29%), Positives = 188/396 (47%), Gaps = 44/396 (11%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HA + L D+++ N L+ Y ++ DAR LFD MP R++ SW + +S+Y
Sbjct: 53 HARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGRE 112
Query: 66 GEVLILFKQLIFEGIVA------DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ L+LF G + ++ L ACA+ +G+ VH A K+GL+ +
Sbjct: 113 DDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANV 172
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ AL+ +YAK +D A+ +FD + +R +
Sbjct: 173 FVGTALVNLYAKAGRIDAAMSVFDALPARNPVT--------------------------- 205
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
W +++ G +A Q ALELF +M +GV PD V+ S SACS L ++ GR +
Sbjct: 206 -----WTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQI 260
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + + DA V ALID+Y KC L A F + +++V+WTTMI G L
Sbjct: 261 HGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLD 320
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV- 358
EA+ +F+Q+ + G +P+ S+L +C I +G Q+ V + + +V
Sbjct: 321 TEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAH---VIKADLESDEYVK 377
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
L+D+ ++ L +A + + AED ISY A++
Sbjct: 378 NALIDMYAKCEHLTEARAVFEAL-AEDDAISYNAMI 412
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 161/325 (49%), Gaps = 32/325 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H K LD++++VG +L++ Y + A +FD +P R+ +W +++ Y+
Sbjct: 156 GEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQ 215
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+G L LF ++ +G+ D+ L SAC+ L + G+ +H YA + E ++
Sbjct: 216 AGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASV 275
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ +Y KC + A RLFD M RN+VS +I GY+ L
Sbjct: 276 VNALIDLYCKCSRLLLARRLFDSM-ENRNLVSWTTMIAGYMQNSL--------------- 319
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
EA+ +F ++ G PD S+L++C SL+ + GR VH
Sbjct: 320 ----------------DTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHA 363
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+++ ++ D +VK ALIDMY+KC L EA F D +++ MIEG A G
Sbjct: 364 HVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTG 423
Query: 302 ALRVFYQMERKGIKPNEATFVSVLA 326
A+ +F +M +KP+ TFVS+L
Sbjct: 424 AVEIFGKMRYCSLKPSLLTFVSLLG 448
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 134/304 (44%), Gaps = 44/304 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H + K+ D+Y G++LI Y + +L DA+++F M RD+ WN ++
Sbjct: 458 LSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLA 517
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E + LF +L G+ ++ T V L + + L + +G+ H K G + +
Sbjct: 518 QNERGEEAVKLFARLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPH 577
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC ++E R +F+ + K
Sbjct: 578 ISNALIDMYAKCGFIEE--------------------------------GRLLFESTLGK 605
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D++ W SM+ + EEAL +F M GV P+ VSVLSAC+ + G +H
Sbjct: 606 DVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEG--LH 663
Query: 241 RFILQNNITQDAFVK------TALIDMYSKCGSLEEALVTFYKTDCKDVVT-WTTMIEGL 293
F N++ V+ ++++++ + G L A + + V T W +++
Sbjct: 664 HF---NSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIWRSLLSAC 720
Query: 294 ANYG 297
+G
Sbjct: 721 HLFG 724
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 250/463 (53%), Gaps = 43/463 (9%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HA + K SD++ NSLI Y +AR++FD+ + D+ S+N+++ Y +
Sbjct: 130 HARIVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNGEI 189
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
G +F ++ +++ N L
Sbjct: 190 GAARKVFNEMPDRDVLS---------------------------------------WNCL 210
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD--KDIV 183
+ Y ++D A LF+ + R+ VS N +I+G + V LA + FD + +++V
Sbjct: 211 IAGYVGVGDLDAANELFETI-PERDAVSWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVV 269
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W S++ + K E L LF KM++ P+E +VSVL+AC++L L G VH F
Sbjct: 270 SWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACANLGKLSMGMWVHSF 329
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
I NNI D + T L+ MY+KCG+++ A F + + VV+W +MI G +G+G++A
Sbjct: 330 IRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDKA 389
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L +F +ME+ G +PN+ATF+SVL+AC H+G++ EG F M VY+++P +EH+ C+VD
Sbjct: 390 LELFLEMEKAGQQPNDATFISVLSACTHAGMVMEGWWYFDLMQRVYKIEPKVEHYGCMVD 449
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL+RAGL+ +EE I+++P + + ALLS C + + +LG+ VA ++L Q
Sbjct: 450 LLARAGLVENSEELIRMVPVKAGSAIWGALLSGCSNHLDSELGEIVAKRFIELEPQDIGP 509
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
Y+LLSN YA +G W +V R +KE +K+ +S++ L+ +
Sbjct: 510 YILLSNMYAAKGRWDDVEHVRLMIKEKGLQKEAASSLVHLEDF 552
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG +H+ + + D+ + L+ Y + A+ +FD+MP R V SWN+++ Y
Sbjct: 322 MGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYG 381
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSAC 94
+ L LF ++ G + T + + SAC
Sbjct: 382 LHGIGDKALELFLEMEKAGQQPNDATFISVLSAC 415
>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
protein [Oryza sativa Japonica Group]
gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 751
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 149/495 (30%), Positives = 250/495 (50%), Gaps = 63/495 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
+G +H V + + +VG+ L+ Y +M L DAR +F +M + V +NTL++
Sbjct: 164 LGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLL 223
Query: 58 -------------------------IYNDFSDSG---EVLILFKQLIFEGIVADKITLVI 89
+ + +G E L +F+++ EG+ D+ T
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +AC L L GK +H Y T+ E + + +AL+ MY+KC+
Sbjct: 284 ILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRS--------------- 328
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+ LA VF + ++I+ W +M+ G + EEA+ F +M
Sbjct: 329 -----------------IRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQ 371
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+G+ PD+ + SV+S+C++L++L+ G H L + + + V AL+ +Y KCGS+E
Sbjct: 372 MDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIE 431
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+A F + D V+WT ++ G A +G E + +F +M G+KP+ TF+ VL+AC
Sbjct: 432 DAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACS 491
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
+GL+ +GC F M + + P +H+ C++DL SR+G +AEEFIK MP +
Sbjct: 492 RAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGW 551
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449
LLS+C ++GK A N+++ Q+ +YVLL + +A +G WTEVA RR M++
Sbjct: 552 ATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDR 611
Query: 450 QTRKKPGNSIIDLKH 464
Q +K+PG S I K+
Sbjct: 612 QVKKEPGCSWIKYKN 626
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 210/402 (52%), Gaps = 7/402 (1%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
D +++ N+L+ L D LF MP RD S+N L++ ++ + L++
Sbjct: 76 DPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRA 135
Query: 75 LIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
L+ E + +ITL + + L G +VHC ++G + + L+ MYAK
Sbjct: 136 LLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMG 195
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
+ +A R+F EM ++ +V N LI G + ++++ A+ +F +VD+D + W +M+ G
Sbjct: 196 LIRDARRVFQEMEAK-TVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLT 254
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ EAL++F++M EGV D+ S+L+AC +L+ L+ G+ +H +I + + F
Sbjct: 255 QNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVF 314
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
V +AL+DMYSKC S+ A F + C+++++WT MI G EA+R F +M+ G
Sbjct: 315 VGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDG 374
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
IKP++ T SV+++C + + EG Q F + V + I LV L + G + A
Sbjct: 375 IKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDA 433
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
M D+ +S+ AL++ Y++F K+ + K+
Sbjct: 434 HRLFDEMSFHDQ-VSWTALVTG---YAQFGKAKETIDLFEKM 471
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 147/324 (45%), Gaps = 40/324 (12%)
Query: 105 TVHCYATKVGLEYMLN-MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
VHC K L+ + N LL YAK + A R+FDEM N+ + N L++
Sbjct: 33 AVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPD-PNLFTRNALLSALAH 91
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI-DEGVTPDEEVMVS 222
LV +F + ++D V + +++ G P +++L++ ++ +E V P + +
Sbjct: 92 SRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSA 151
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK- 281
++ S+LS+ G VH +L+ AFV + L+DMY+K G + +A F + + K
Sbjct: 152 MIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKT 211
Query: 282 ------------------------------DVVTWTTMIEGLANYGLGNEALRVFYQMER 311
D +TWTTM+ GL GL EAL VF +M
Sbjct: 212 VVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA 271
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGL 369
+G+ ++ TF S+L AC + EG Q+ + R FV LVD+ S+
Sbjct: 272 EGVGIDQYTFGSILTACGALAALEEGKQIH---AYITRTWYEDNVFVGSALVDMYSKCRS 328
Query: 370 LYQAEEFIKIMPAEDKFISYKALL 393
+ AE + M + IS+ A++
Sbjct: 329 IRLAEAVFRRMTCRN-IISWTAMI 351
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 142/466 (30%), Positives = 255/466 (54%), Gaps = 9/466 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H HV + + Y+ ++H T A +F ++ ++ N ++ Y
Sbjct: 33 VHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQ 92
Query: 65 SGEVLILFKQLI------FEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ + ++ +++ +G D+ T L AC L GK VH + + G +
Sbjct: 93 HRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDS 152
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
++N+L+ MY + ++ A ++FDEM R++VS N+LI+ + + + A +F+ +
Sbjct: 153 SAIVQNSLIEMYTRAGDLALAHKVFDEM-RERDVVSWNMLISAHARLGQMRKATALFNSM 211
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
DK IV W +M+ G A++ F+ M EG PD+ +V+VL AC+ L L+ GR
Sbjct: 212 PDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGTLELGR 271
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
++ + ++ + + AL++MY+KCG +++AL F KDV++W+T+I GLA +G
Sbjct: 272 WIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHG 331
Query: 298 LGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
+EA+ +F +ME++G ++PN TFV +L+AC ++GL+ EG F RM VY V+P +EH
Sbjct: 332 RAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEH 391
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL R+G + +A + ++ MP + +LLSAC ++ + D A +++L
Sbjct: 392 YGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVELE 451
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
V+L+N YA W++VA R+ ++ RK PG S+I++
Sbjct: 452 PDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEV 497
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 142/337 (42%), Gaps = 78/337 (23%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
+GK +H HV ++ DS V NSLI Y R A +FD+M RDV SWN L+S
Sbjct: 137 LGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHA 196
Query: 58 ----------IYNDFSD----------SGEVLI--------LFKQLIFEGIVADKITLVI 89
++N D SG + F+ + EG D +++V
Sbjct: 197 RLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVA 256
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ ACA+L L G+ ++ Y + G+ ++ NAL+ MYAKC +D+AL+LFD M
Sbjct: 257 VLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMA--- 313
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
DKD++ W +++ G + EA+ LF +M
Sbjct: 314 -----------------------------DKDVISWSTVIGGLAAHGRAHEAVWLFTEME 344
Query: 210 DEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF-VKTA------LIDM 261
EG V P+ V +LSACS Y LV + + D + V+ ++D+
Sbjct: 345 KEGKVRPNVITFVGLLSACS------YAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDL 398
Query: 262 YSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYG 297
+ G + AL D W +++ ++G
Sbjct: 399 LGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHG 435
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 146/386 (37%), Positives = 223/386 (57%), Gaps = 4/386 (1%)
Query: 80 IVADKITLVILFSACARLEKL--HYGKTVHCYATKVGLEYM-LNMENALLLMYAKCKEMD 136
I + +T + L S CA L G +H Y K+GL+ L + AL+ MYAKC ++
Sbjct: 6 IDPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVE 65
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
+ FDE+ +N S N +I+G++ + A EVFDE+ ++ ++ W +++G VK
Sbjct: 66 LSRLCFDEL-KVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMG 124
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
EEALE F+KM V PD +V+VLSAC++L L G VHR+ L+ + + +
Sbjct: 125 LFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICN 184
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
+LID+YS+CG++E A F K + +V+W ++I GLA G EAL F M+++G KP
Sbjct: 185 SLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKP 244
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
N+ +F L AC H+GL+ EG + F M V+++ P IEH+ C+VDL SRAG L A
Sbjct: 245 NDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSV 304
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436
++ MP + + +LL+AC T + +L +++ N ++ L + YVLLSN YA G W
Sbjct: 305 VQNMPMKPNEVVVGSLLAACRTRGDVELAERLMNYLVHLDPGADSNYVLLSNIYAAVGRW 364
Query: 437 TEVAEARRNMKELQTRKKPGNSIIDL 462
+ R MK L +KKPG S I++
Sbjct: 365 DGACKQRMTMKALGIQKKPGFSSIEI 390
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 151/368 (41%), Gaps = 105/368 (28%)
Query: 1 MGKGLHAHVTKTALDS-DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS-- 57
+G LHA+ K LD+ ++ VG +L+ Y + +R+ FD++ ++ SWNT++
Sbjct: 30 LGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVELSRLCFDELKVKNSFSWNTMIDGF 89
Query: 58 -----------IYNDFSDSG------------------EVLILFKQLIFEGIVADKITLV 88
++++ + G E L F+++ + D++T+V
Sbjct: 90 VRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEALEWFRKMQVSKVEPDRVTIV 149
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ SACA L L G VH YA K GL + + N+L+ +Y++C ++ A ++F++MG R
Sbjct: 150 TVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGER 209
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+V W S++ G EEALE F M
Sbjct: 210 T--------------------------------LVSWNSIIGGLAANGFTEEALEHFDLM 237
Query: 209 IDEGVTPDEEVMVSVLSACSSLS----NLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
+G P++ L+ACS L+Y ++ R + I+ ++D+YS+
Sbjct: 238 QKQGFKPNDVSFTGALTACSHTGLVDEGLKYFDIMERV---HKISPRIEHYGCIVDLYSR 294
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
G LE+A+ ++ +KPNE S+
Sbjct: 295 AGRLEDAMSV----------------------------------VQNMPMKPNEVVVGSL 320
Query: 325 LAACRHSG 332
LAACR G
Sbjct: 321 LAACRTRG 328
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 27/195 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G +H + K L ++ + NSLI Y R AR +F+KM R + SWN+++
Sbjct: 163 LGLWVHRYALKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLA 222
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N F++ E L F + +G + ++ +AC+ H GL+Y
Sbjct: 223 ANGFTE--EALEHFDLMQKQGFKPNDVSFTGALTACS-----------HTGLVDEGLKYF 269
Query: 119 LNME------------NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMEL 166
ME ++ +Y++ +++A+ + M + N V + L+
Sbjct: 270 DIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQNMPMKPNEVVVGSLLAACRTRGD 329
Query: 167 VDLAREVFDEIVDKD 181
V+LA + + +V D
Sbjct: 330 VELAERLMNYLVHLD 344
>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial; AltName: Full=Protein DYW10;
Flags: Precursor
gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 656
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 147/451 (32%), Positives = 237/451 (52%), Gaps = 41/451 (9%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ D + N ++ Y R F A+ FD+MPF+D SWNT+++ Y + + LF
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYS 180
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
++ + V+ NA++ Y +C +
Sbjct: 181 MMEKNEVS---------------------------------------WNAMISGYIECGD 201
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF-DEIVDKDIVLWRSMMHGCV 193
+++A F ++ R +V+ +I GY+ + V+LA +F D V+K++V W +M+ G V
Sbjct: 202 LEKASHFF-KVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYV 260
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ +PE+ L+LF+ M++EG+ P+ + S L CS LS LQ GR +H+ + ++ + D
Sbjct: 261 ENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVT 320
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
T+LI MY KCG L +A F KDVV W MI G A +G ++AL +F +M
Sbjct: 321 ALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNK 380
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
I+P+ TFV+VL AC H+GL+ G F M Y+V+P +H+ C+VDLL RAG L +A
Sbjct: 381 IRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEA 440
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE 433
+ I+ MP + LL AC + +L + A +++L +Q+ YV L+N YA +
Sbjct: 441 LKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASK 500
Query: 434 GHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
W +VA R+ MKE K PG S I++++
Sbjct: 501 NRWEDVARVRKRMKESNVVKVPGYSWIEIRN 531
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 129/327 (39%), Gaps = 42/327 (12%)
Query: 109 YATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168
Y TK + + N ++ + ++D ALR+F M ++ I ++LI D +
Sbjct: 51 YLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMM 110
Query: 169 LAREVFDEIVD-------------------------------KDIVLWRSMMHGCVKAKQ 197
A ++FDEI + KD W +M+ G + +
Sbjct: 111 EAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGE 170
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
E+A ELF M+++ M+S C L + H F + + TA
Sbjct: 171 MEKARELFYSMMEKNEV-SWNAMISGYIECGDLE-----KASHFFKVAP--VRGVVAWTA 222
Query: 258 LIDMYSKCGSLEEALVTFYK-TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
+I Y K +E A F T K++VTW MI G + L++F M +GI+P
Sbjct: 223 MITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRP 282
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
N + S L C + G Q+ + + + L+ + + G L A +
Sbjct: 283 NSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCN-DVTALTSLISMYCKCGELGDAWKL 341
Query: 377 IKIMPAEDKFISYKALLSACITYSEFD 403
++M +D +++ A++S + D
Sbjct: 342 FEVMKKKD-VVAWNAMISGYAQHGNAD 367
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 4/176 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H V+K+ L +D+ SLI Y + DA LF+ M +DV +WN ++S Y
Sbjct: 302 LGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYA 361
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-VHCYATKVGLEYML 119
++ + L LF+++I I D IT V + AC ++ G +E
Sbjct: 362 QHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQP 421
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLARE 172
+ ++ + + +++EAL+L M R + L+ + ++EL + A E
Sbjct: 422 DHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAE 477
>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
Length = 742
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 149/495 (30%), Positives = 250/495 (50%), Gaps = 63/495 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
+G +H V + + +VG+ L+ Y +M L DAR +F +M + V +NTL++
Sbjct: 164 LGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLL 223
Query: 58 -------------------------IYNDFSDSG---EVLILFKQLIFEGIVADKITLVI 89
+ + +G E L +F+++ EG+ D+ T
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +AC L L GK +H Y T+ E + + +AL+ MY+KC+
Sbjct: 284 ILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRS--------------- 328
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+ LA VF + ++I+ W +M+ G + EEA+ F +M
Sbjct: 329 -----------------IRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQ 371
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+G+ PD+ + SV+S+C++L++L+ G H L + + + V AL+ +Y KCGS+E
Sbjct: 372 MDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIE 431
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+A F + D V+WT ++ G A +G E + +F +M G+KP+ TF+ VL+AC
Sbjct: 432 DAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACS 491
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
+GL+ +GC F M + + P +H+ C++DL SR+G +AEEFIK MP +
Sbjct: 492 RAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGW 551
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449
LLS+C ++GK A N+++ Q+ +YVLL + +A +G WTEVA RR M++
Sbjct: 552 ATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDR 611
Query: 450 QTRKKPGNSIIDLKH 464
Q +K+PG S I K+
Sbjct: 612 QVKKEPGCSWIKYKN 626
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 207/395 (52%), Gaps = 7/395 (1%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
D +++ N+L+ L D LF MP RD S+N L++ ++ + L++
Sbjct: 76 DPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRA 135
Query: 75 LIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133
L+ E + +ITL + + L G +VHC ++G + + L+ MYAK
Sbjct: 136 LLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMG 195
Query: 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCV 193
+ +A R+F EM ++ +V N LI G + ++++ A+ +F +VD+D + W +M+ G
Sbjct: 196 LIRDARRVFQEMEAK-TVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLT 254
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ EAL++F++M EGV D+ S+L+AC +L+ L+ G+ +H +I + + F
Sbjct: 255 QNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVF 314
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
V +AL+DMYSKC S+ A F + C+++++WT MI G EA+R F +M+ G
Sbjct: 315 VGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDG 374
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
IKP++ T SV+++C + + EG Q F + V + I LV L + G + A
Sbjct: 375 IKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDA 433
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
M D+ +S+ AL++ Y++F K+
Sbjct: 434 HRLFDEMSFHDQ-VSWTALVTG---YAQFGKAKET 464
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 147/324 (45%), Gaps = 40/324 (12%)
Query: 105 TVHCYATKVGLEYMLN-MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID 163
VHC K L+ + N LL YAK + A R+FDEM N+ + N L++
Sbjct: 33 AVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPD-PNLFTRNALLSALAH 91
Query: 164 MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI-DEGVTPDEEVMVS 222
LV +F + ++D V + +++ G P +++L++ ++ +E V P + +
Sbjct: 92 SRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSA 151
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK- 281
++ S+LS+ G VH +L+ AFV + L+DMY+K G + +A F + + K
Sbjct: 152 MIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKT 211
Query: 282 ------------------------------DVVTWTTMIEGLANYGLGNEALRVFYQMER 311
D +TWTTM+ GL GL EAL VF +M
Sbjct: 212 VVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA 271
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGL 369
+G+ ++ TF S+L AC + EG Q+ + R FV LVD+ S+
Sbjct: 272 EGVGIDQYTFGSILTACGALAALEEGKQIH---AYITRTWYEDNVFVGSALVDMYSKCRS 328
Query: 370 LYQAEEFIKIMPAEDKFISYKALL 393
+ AE + M + IS+ A++
Sbjct: 329 IRLAEAVFRRMTCRN-IISWTAMI 351
>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
Length = 1037
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 149/464 (32%), Positives = 248/464 (53%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H HV KT ++YV + LI Y + A + ++P DV SW +++ Y
Sbjct: 481 LGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYV 540
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L LF+++ + GI D I SACA + L G+ +H + G L+
Sbjct: 541 QHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLS 600
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ +YA+C + EA F+++G DK
Sbjct: 601 INNALISLYARCGRIQEAYLAFEKIG--------------------------------DK 628
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ + W S++ G ++ EEAL++F +M+ + S +SA +SL+N++ G+ +H
Sbjct: 629 NNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIH 688
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+L+ + V +LI +Y+K GS+ +A F ++V++W MI G + +G G
Sbjct: 689 SMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGM 748
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EALR+F +M+ GI PN TFV VL+AC H GL+ EG F M ++ + P EH+VC+
Sbjct: 749 EALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCV 808
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +A E+IK MP + ++ LLSAC+ + ++G++ A+++++L +
Sbjct: 809 VDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDS 868
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVL+SN YA+ W +R+ MK+ +K+PG S I++K+
Sbjct: 869 ATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKN 912
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 201/418 (48%), Gaps = 42/418 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+G+ LH V K S+ YV N L+ Y R A +F M RD S+N+L+S +
Sbjct: 279 LGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLV 338
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
FSD L LF ++ + + D IT+ L SACA + LH G +H +A K G+
Sbjct: 339 QQGFSD--RALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSAD 396
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ +E +LL +Y+KC +++ A + F L E
Sbjct: 397 IILEGSLLDLYSKCADVETAHKFF--------------------------LTTET----- 425
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++IVLW M+ + ++ E+F++M EG+ P++ S+L C+SL L G
Sbjct: 426 -ENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H +++ + +V + LIDMY+K G L AL + DVV+WT MI G + +
Sbjct: 485 IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDM 544
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF-RRMGGVYRVQPTIEHF 357
+EAL++F +ME +GI+ + F S ++AC + +G Q+ + + +I +
Sbjct: 545 FSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINN- 603
Query: 358 VCLVDLLSRAGLLYQAE-EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
L+ L +R G + +A F KI + IS+ +L+S F+ +V M++
Sbjct: 604 -ALISLYARCGRIQEAYLAFEKI--GDKNNISWNSLVSGLAQSGYFEEALQVFVRMLR 658
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 186/402 (46%), Gaps = 38/402 (9%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +H+ DS V N LI Y + A+ +F+ + +D+ +W ++S +
Sbjct: 180 KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQN 239
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
E ++LF + I L + SA +++ G+ +HC K G +
Sbjct: 240 GLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVC 299
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N L+ +Y++ +++ A R+F M SR D
Sbjct: 300 NGLVALYSRSRKLISAERIFSTMNSR--------------------------------DG 327
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V + S++ G V+ + ALELF KM + + PD + S+LSAC+S+ L G +H
Sbjct: 328 VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSH 387
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
++ ++ D ++ +L+D+YSKC +E A F T+ +++V W M+ +++
Sbjct: 388 AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDS 447
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC--L 360
+F QM+ +G+ PN+ T+ S+L C G + G Q+ V + + +VC L
Sbjct: 448 FEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTH---VIKTGFQLNVYVCSVL 504
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
+D+ ++ G L A ++ +P ED +S+ A+++ + + F
Sbjct: 505 IDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQHDMF 545
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 159/337 (47%), Gaps = 33/337 (9%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LH ++K+ D + + +SL+ Y R A +FD+ R V SWN ++ ++
Sbjct: 80 LHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKS 139
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLE-KLHYGKTVHCYATKVGLEYMLNMEN 123
+ +V LF++++ EGI + T + AC + +Y K VH G + + N
Sbjct: 140 NFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVAN 199
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
L+ +Y+K NGYI+ A++VF+ I KDIV
Sbjct: 200 LLIDLYSK---------------------------NGYIES-----AKKVFNCICMKDIV 227
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W +M+ G + EEA+ LF M + P V+ SVLSA + + + G +H +
Sbjct: 228 TWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLV 287
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++ + +V L+ +YS+ L A F + +D V++ ++I GL G + AL
Sbjct: 288 IKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRAL 347
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
+F +M+R +KP+ T S+L+AC G + +G QL
Sbjct: 348 ELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQL 384
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 105/231 (45%), Gaps = 7/231 (3%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A +VFDE ++ + W M+H V K + LF++M+ EG+TP+ VL AC
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171
Query: 230 LS-NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
Y + VH V LID+YSK G +E A F KD+VTW
Sbjct: 172 GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
MI GL+ GL EA+ +F M I P SVL+A L G QL V
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCL---VI 288
Query: 349 RVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397
+ E +VC LV L SR+ L AE M + D +SY +L+S +
Sbjct: 289 KWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDG-VSYNSLISGLV 338
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 1/194 (0%)
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
++L M + GV + + + +L C + +L +H I ++ + + +L+D
Sbjct: 43 IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y + G A+ F + + V +W MI + +F +M +GI PN TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
VL AC + + Y + L+DL S+ G + A++ +
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222
Query: 382 AEDKFISYKALLSA 395
+D +++ A++S
Sbjct: 223 MKD-IVTWVAMISG 235
>gi|302792457|ref|XP_002977994.1| hypothetical protein SELMODRAFT_108325 [Selaginella moellendorffii]
gi|300154015|gb|EFJ20651.1| hypothetical protein SELMODRAFT_108325 [Selaginella moellendorffii]
Length = 613
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 147/434 (33%), Positives = 238/434 (54%), Gaps = 7/434 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA ++ LD ++GN L++ YGR AR F+K+ +++ SWN ++ Y
Sbjct: 18 GRAIHAQISSRELDHHTHLGNGLVNMYGRCKELHRARKAFEKITAKNLVSWNVIIGAYAQ 77
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
G + LF+++ EG+ AD +T + + AC +E + +H GLE+ + +
Sbjct: 78 EGHRGHAMELFQRMDPEGVAADAVTFLHVLDACGGVEAAGDVRRIHKKLELSGLEWDVFV 137
Query: 122 ENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++L+ Y KC + EA R+FD M ++ ++V L+N Y ++ A+ +FD +
Sbjct: 138 ASSLVNAYGKCGCLAEAKRVFDAMPLKNTQPDVVLGTALLNMYGRCGVLGAAKSLFDGMA 197
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
DK+ + W ++M + +EAL L+ M + P+ ++VL+ACS++ L GR
Sbjct: 198 DKNTITWNALMGSYAQWGYGKEALNLYHSMDAQ---PNSLTFLAVLTACSTVGALLQGRA 254
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
H + ++ V AL++MY KCGSLE+AL TF K + K VVTWT + LA++G
Sbjct: 255 AHARLAPAGFEKEVEVGVALVNMYGKCGSLEDALGTFAKLERKTVVTWTVAMLALAHHGE 314
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
E LR+F +ME +G+ P+ ++ L AC HSG + EG F M Y V PT+ H+
Sbjct: 315 FRETLRLFTEMELEGVAPDSVALLAALFACSHSGKLKEGRSYFTNMIQDYGVSPTLAHYD 374
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE-FDLGKKVANNMMKLGN 417
C+VDLL R GLL +AEE I MP E +++ LL+AC T+S +D K A+ ++
Sbjct: 375 CVVDLLCRTGLLGRAEELIDSMPFEPSAVTWTTLLAACRTHSTLYDKAKVAADKALETEP 434
Query: 418 QSHEAYVLLSNFYA 431
+ Y LS Y+
Sbjct: 435 HNAGIYFALSYMYS 448
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 140/291 (48%), Gaps = 9/291 (3%)
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
L+ +AC+ E L G+ +H + L++ ++ N L+ MY +CKE+ A + F+++
Sbjct: 2 LLSAITACSSAEFLDDGRAIHAQISSRELDHHTHLGNGLVNMYGRCKELHRARKAFEKI- 60
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFD----EIVDKDIVLWRSMMHGCVKAKQPEEAL 202
+ +N+VS N++I Y A E+F E V D V + ++ C + +
Sbjct: 61 TAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLDACGGVEAAGDVR 120
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
+ KK+ G+ D V S+++A L + V + N D + TAL++MY
Sbjct: 121 RIHKKLELSGLEWDVFVASSLVNAYGKCGCLAEAKRVFDAMPLKNTQPDVVLGTALLNMY 180
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
+CG L A F K+ +TW ++ A +G G EAL +++ M+ +PN TF+
Sbjct: 181 GRCGVLGAAKSLFDGMADKNTITWNALMGSYAQWGYGKEALNLYHSMD---AQPNSLTFL 237
Query: 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
+VL AC G + +G R+ + +E V LV++ + G L A
Sbjct: 238 AVLTACSTVGALLQGRAAHARLAPA-GFEKEVEVGVALVNMYGKCGSLEDA 287
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 40/227 (17%)
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
+++S ++ACSS L GR +H I + + L++MY +C L A F K
Sbjct: 1 MLLSAITACSSAEFLDDGRAIHAQISSRELDHHTHLGNGLVNMYGRCKELHRARKAFEKI 60
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC---------- 328
K++V+W +I A G A+ +F +M+ +G+ + TF+ VL AC
Sbjct: 61 TAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLDACGGVEAAGDVR 120
Query: 329 -------------------------RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
G + E ++F M + QP + L+++
Sbjct: 121 RIHKKLELSGLEWDVFVASSLVNAYGKCGCLAEAKRVFDAM-PLKNTQPDVVLGTALLNM 179
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
R G+L A+ M A+ I++ AL+ +Y+++ GK+ N
Sbjct: 180 YGRCGVLGAAKSLFDGM-ADKNTITWNALMG---SYAQWGYGKEALN 222
>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 148/468 (31%), Positives = 250/468 (53%), Gaps = 36/468 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMAL---FTDARVLFDKMPFRDVGSWNTLMS 57
+GK LH+ V + L D+ VG SL+ Y + A D+R +F++MP +V SW +++
Sbjct: 249 LGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIIT 308
Query: 58 IYNDFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
Y + E + LF ++I I + + + AC L + G+ V+ YA K+G+
Sbjct: 309 AYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIA 368
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ + N+L+ MYA+ M++A R+ FD
Sbjct: 369 SVNCVGNSLISMYARSGRMEDA--------------------------------RKAFDI 396
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ +K++V + +++ G K + EEA LF ++ D G+ S+LS +S+ + G
Sbjct: 397 LFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKG 456
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+H +L+ + + ALI MYS+CG++E A F + + ++V++WT+MI G A +
Sbjct: 457 EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKH 516
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G AL +F++M G KPNE T+V+VL+AC H G+I+EG + F M + + P +EH
Sbjct: 517 GFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEH 576
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL R+GLL +A EFI MP + ++ LL AC + +LG+ A +++
Sbjct: 577 YACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQE 636
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
AY+LLSN +A G W +V + R++MKE K+ G S I++++
Sbjct: 637 PDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVEN 684
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 208/426 (48%), Gaps = 38/426 (8%)
Query: 1 MGKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMAL-FTDARVLFDKMPFRDVGSWNTLMSI 58
+G+ ++ V KT L++D+ VG LI + + + A +FDKMP R++ +W +++
Sbjct: 146 VGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITR 205
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ + + + LF + G V D+ T + SAC L L GK +H ++GL
Sbjct: 206 FAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALD 265
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + +L+ MYAKC GS VD +R+VF+++
Sbjct: 266 VCVGCSLVDMYAKCAAD----------GS-------------------VDDSRKVFEQMP 296
Query: 179 DKDIVLWRSMMHGCVKAKQ-PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+ +++ W +++ V++ + +EA+ELF KMI + P+ SVL AC +LS+ G
Sbjct: 297 EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGE 356
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
V+ + ++ I V +LI MY++ G +E+A F K++V++ +++G A
Sbjct: 357 QVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNL 416
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR-MGGVYRVQPTIEH 356
EA +F ++ GI + TF S+L+ G + +G Q+ R + G Y+ I +
Sbjct: 417 KSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICN 476
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDK-FISYKALLSACITYSEFDLGKKVANNMMKL 415
L+ + SR G + A + M ED+ IS+ ++++ + ++ + M++
Sbjct: 477 --ALISMYSRCGNIEAAFQVFNEM--EDRNVISWTSMITGFAKHGFATRALEMFHKMLET 532
Query: 416 GNQSHE 421
G + +E
Sbjct: 533 GTKPNE 538
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 151/330 (45%), Gaps = 46/330 (13%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D T IL +C R GK VH + GLE + N L+ +Y+KC + + A +F
Sbjct: 25 DLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIF 84
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
+ MG++R D+V W +M+ +A+
Sbjct: 85 EGMGNKR-------------------------------DLVSWSAMVSCFANNSMEWQAI 113
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN-ITQDAFVKTALIDM 261
F M++ G P+E +V+ ACS+ + G +++ F+++ + D V LIDM
Sbjct: 114 WTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDM 173
Query: 262 YSK-CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
+ K G L A F K +++VTWT MI A G +A+ +F ME G P+ T
Sbjct: 174 FVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFT 233
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRA---GLLYQA 373
+ SVL+AC GL+ G QL R V R+ ++ VC LVD+ ++ G + +
Sbjct: 234 YSSVLSACTELGLLALGKQLHSR---VIRLGLALD--VCVGCSLVDMYAKCAADGSVDDS 288
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFD 403
+ + MP E +S+ A+++A + E D
Sbjct: 289 RKVFEQMP-EHNVMSWTAIITAYVQSGECD 317
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 112/253 (44%), Gaps = 38/253 (15%)
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
A M + PD +L +C N Q G+LVHR ++Q+ + D+ V LI
Sbjct: 10 AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 69
Query: 261 MYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
+YSKCG E A + F K D+V+W+ M+ AN + +A+ F M G PNE
Sbjct: 70 LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 129
Query: 320 TFVSVLAACRHS----------GLITE----------GCQLFR-------RMGGVYRVQP 352
F +V+ AC ++ G + + GC+L +G Y+V
Sbjct: 130 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 189
Query: 353 TI--EHFVCLVDLLSRAGLLYQAEEFIKIMP-------AEDKFISYKALLSACITYSEFD 403
+ + V +++R L A + I + D+F +Y ++LSAC
Sbjct: 190 KMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRF-TYSSVLSACTELGLLA 248
Query: 404 LGKKVANNMMKLG 416
LGK++ + +++LG
Sbjct: 249 LGKQLHSRVIRLG 261
>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 160/467 (34%), Positives = 253/467 (54%), Gaps = 10/467 (2%)
Query: 2 GKGLHAHVTKTALDS---DIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLM 56
GK LHA + + L S + ++ N+L H Y + + AR LF ++P +DV W TL+
Sbjct: 34 GKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFYQIPRSHKDVTDWTTLL 93
Query: 57 -SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
S+ + E FK++ EG+V D + ++ +F C R+E L G+ K+GL
Sbjct: 94 TSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVEDLGMGRQAQGCLVKMGL 153
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ + NA++ MY KC ++E R+F EM + RN+VS + L+ G + E V+ R VFD
Sbjct: 154 GLGVKVCNAIMNMYVKCGLVEEVRRVFCEM-NERNVVSWSTLLEGVVKWEGVENGRVVFD 212
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQ 234
E+ +++ V W M+ G V E L +M+ + + + S+LSAC+ ++
Sbjct: 213 EMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVL 272
Query: 235 YGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
GR VH + L+ V TAL+DMY+KCG ++ A F ++VV W M+ GL
Sbjct: 273 MGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGL 332
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A +G G L +F +M + KP++ TF++VL+AC HSGL+ +G FR + Y P
Sbjct: 333 AMHGRGKFVLDIFPKMIEEA-KPDDLTFMAVLSACSHSGLVDQGYHYFRSLESEYGTTPK 391
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
IEH+ C+VD+L RAG L +A IK MP + +LL +C + + LG+++ ++
Sbjct: 392 IEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAHGKLQLGERILQELI 451
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
++ + E +VLLSN Y LEG + R+ +K RK PG S I
Sbjct: 452 QMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIRKVPGVSSI 498
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 149/349 (42%), Gaps = 73/349 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
MG+ + K L + V N++++ Y + L + R +F +M R+V SW+TL+
Sbjct: 140 MGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVV 199
Query: 58 ------------------------------IYNDFSDSGEVLILFKQLIFEGIVADKITL 87
+ N FS G +L+ L F + + +TL
Sbjct: 200 KWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFR-LGLNFVTL 258
Query: 88 VILFSACARLEKLHYGKTVHCYATK-VGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+ SACA+ + G+ VH YA K +G E + + AL+ MYAKC +D A ++F +
Sbjct: 259 SSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYL- 317
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
+RN+V+ N ++ G MHG + + L++F
Sbjct: 318 PKRNVVAWNAMLGGL--------------------------AMHG-----RGKFVLDIFP 346
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA-LIDMYSKC 265
KMI+E PD+ ++VLSACS + G R + T A ++D+ +
Sbjct: 347 KMIEE-AKPDDLTFMAVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRA 405
Query: 266 GSLEEALVTFYKTD-CKDVVTWTTMIEGLANYG---LGNEALRVFYQME 310
G LEEA++ K C + V +++ +G LG L+ QM+
Sbjct: 406 GHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAHGKLQLGERILQELIQMD 454
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 156/470 (33%), Positives = 257/470 (54%), Gaps = 21/470 (4%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + + + SD+++ N L+ Y R AR LFD+M RD S+N+++ Y
Sbjct: 141 GMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVK 200
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
LF + E + I+ + S AR E+ +V E M
Sbjct: 201 HGMVKSARELFDVMPMEQ--KNLISWNSMISGYARSEE----------GLRVAWELFEEM 248
Query: 122 E-------NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF 174
N+++ KC +M+ A LF++M +R++VS +++GY + +D+AR +F
Sbjct: 249 PKRDLISWNSMIDGCVKCGKMENAHHLFNQM-PKRDVVSWANMVDGYAKLGEIDIARGLF 307
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNL 233
DE+ ++D++ +MM G V+ EAL F M+ + + PD ++ LSA + L +
Sbjct: 308 DEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHF 367
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
G +H +I N + + ALIDMY+KCGS++ AL F D K + W +I GL
Sbjct: 368 DEGVALHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGL 427
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A +GLG A +F +ME+ +KP++ TF+ VL AC H+GL+ EG F M V++V+P
Sbjct: 428 AIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPK 487
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413
++H+ C+VD+L RAG + +A++F++ MP E + ++ LLSAC + F +G+ VA +++
Sbjct: 488 LQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLI 547
Query: 414 KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ + + +YVLLSN YA G W +V R MK+ +K PG S I+L+
Sbjct: 548 SVDSYNPSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELE 597
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 148/293 (50%), Gaps = 13/293 (4%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN ++ ++ D E ++F ++ G+ DK + ++ AC+RL + G +H
Sbjct: 90 WNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLG 149
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
++ + + ++N L+ +Y +C + A +LFD M +R+ VS N +I+GY+ +V AR
Sbjct: 150 RMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRM-MKRDSVSFNSMIDGYVKHGMVKSAR 208
Query: 172 EVFD--EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
E+FD + K+++ W SM+ G ++ EE L + ++ +E D S++ C
Sbjct: 209 ELFDVMPMEQKNLISWNSMISGYARS---EEGLRVAWELFEEMPKRDLISWNSMIDGC-- 263
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTA-LIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
++ G++ + L N + + V A ++D Y+K G ++ A F + +DV++
Sbjct: 264 ---VKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNA 320
Query: 289 MIEGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
M+ G G EAL F+ M RK + P+ AT + L+A G EG L
Sbjct: 321 MMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVAL 373
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 105/232 (45%), Gaps = 13/232 (5%)
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
LW +++ + P EA +F M++ GV D+ VL ACS L ++ G +H +
Sbjct: 89 LWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLL 148
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ I D F++ L+ +Y +CG L A F + +D V++ +MI+G +G+ A
Sbjct: 149 GRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSAR 208
Query: 304 RVF--YQMERKGIKPNEATFVSVLAA-CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+F ME+K N ++ S+++ R + +LF M + + + +
Sbjct: 209 ELFDVMPMEQK----NLISWNSMISGYARSEEGLRVAWELFEEMP-----KRDLISWNSM 259
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
+D + G + A MP D +S+ ++ E D+ + + + M
Sbjct: 260 IDGCVKCGKMENAHHLFNQMPKRD-VVSWANMVDGYAKLGEIDIARGLFDEM 310
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 142/466 (30%), Positives = 255/466 (54%), Gaps = 9/466 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H HV + + Y+ ++H T A +F ++ ++ N ++ Y
Sbjct: 33 VHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQ 92
Query: 65 SGEVLILFKQLI------FEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ + ++ +++ +G D+ T L AC L GK VH + + G +
Sbjct: 93 HRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDS 152
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
++N+L+ MY + ++ A ++FDEM R++VS N+LI+ + + + A +F+ +
Sbjct: 153 SAIVQNSLIEMYTRAGDLALAHKVFDEM-RERDVVSWNMLISAHARLGQMRKATALFNSM 211
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
DK IV W +M+ G A++ F+ M EG PD+ +V+VL AC+ L L+ GR
Sbjct: 212 PDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGR 271
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
++ + ++ + + AL++MY+KCG +++AL F KDV++W+T+I GLA +G
Sbjct: 272 WIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHG 331
Query: 298 LGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
+EA+ +F +ME++G ++PN TFV +L+AC ++GL+ EG F RM VY V+P +EH
Sbjct: 332 RAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEH 391
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL R+G + +A + ++ MP + +LLSAC ++ + D A +++L
Sbjct: 392 YGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVELE 451
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
V+L+N YA W++VA R+ ++ RK PG S+I++
Sbjct: 452 PDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEV 497
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 142/337 (42%), Gaps = 78/337 (23%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
+GK +H HV ++ DS V NSLI Y R A +FD+M RDV SWN L+S
Sbjct: 137 LGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHA 196
Query: 58 ----------IYNDFSD----------SGEVLI--------LFKQLIFEGIVADKITLVI 89
++N D SG + F+ + EG D +++V
Sbjct: 197 RLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVA 256
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ ACA+L L G+ ++ Y + G+ ++ NAL+ MYAKC +D+AL+LFD M
Sbjct: 257 VLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMA--- 313
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
DKD++ W +++ G + EA+ LF +M
Sbjct: 314 -----------------------------DKDVISWSTVIGGLAAHGRAHEAVWLFTEME 344
Query: 210 DEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF-VKTA------LIDM 261
EG V P+ V +LSACS Y LV + + D + V+ ++D+
Sbjct: 345 KEGKVRPNVITFVGLLSACS------YAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDL 398
Query: 262 YSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYG 297
+ G + AL D W +++ ++G
Sbjct: 399 LGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHG 435
>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 164/504 (32%), Positives = 260/504 (51%), Gaps = 45/504 (8%)
Query: 5 LHAHVTKTALDS-DIYVGNSLIHFYGRMA--------LFTDARVLFDKMPFRDVGSWNTL 55
+H V KT + V N+L+ Y + A AR LFD+MP RD +W T+
Sbjct: 170 MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTM 229
Query: 56 MSIY---NDFSDSGEV----------------------------LILFKQLIFEGIVADK 84
++ Y +D + + EV L L +++ F GI D
Sbjct: 230 ITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDD 289
Query: 85 ITLVILFSACARLEKLHYGKTVHCYATKVGL----EYMLNMENALLLMYAKCKEMDEALR 140
IT + SACA + GK VH Y K L + L++ NAL+ +Y K ++DEA +
Sbjct: 290 ITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARK 349
Query: 141 LFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
+F M RNI++ N +++GY++ ++ A+ F+E+ K+++ M+ G + +E
Sbjct: 350 IFYAM-PVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDE 408
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
L+LFK+M +G P + L+ACS L L+ GR +H ++ V A+I
Sbjct: 409 GLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMIS 468
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
MY+KCG +E A F D+V+W +MI L +G G +A+ +F QM ++G+ P+ T
Sbjct: 469 MYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRIT 528
Query: 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
F++VL AC H+GL+ +G F M Y + P +H+ +VDL RAG+ A I M
Sbjct: 529 FLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSM 588
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440
P++ ++ALL+ C + DLG + A + KL Q+ YVLLSN YA G W EVA
Sbjct: 589 PSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVA 648
Query: 441 EARRNMKELQTRKKPGNSIIDLKH 464
+ R+ M++ RK+P S I++++
Sbjct: 649 KVRKLMRDQAVRKEPACSWIEVEN 672
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 212/475 (44%), Gaps = 85/475 (17%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--------------- 45
+ + +HAH+ + + N L+ Y + + AR LF+++P
Sbjct: 31 LARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYC 90
Query: 46 ------------------FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87
RD +N +++ Y D L LF+ + + D T
Sbjct: 91 ALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTF 150
Query: 88 VILFSACARL--EKLHYGKTVHCYATKVGLEYMLN-MENALLLMYAK--------CKEMD 136
+ SA + G+ +HC K G+ + + + NALL +Y K C M
Sbjct: 151 TSVLSALVLFVGNEQQCGQ-MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMV 209
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A +LFDEM +R+ ++ +I GY+ + ++ AREVF+ +V+ W +M+ G V
Sbjct: 210 SARKLFDEM-PKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCG 268
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD-AF-- 253
+EAL L +KM G+ D+ +++SAC+++ + Q G+ VH +IL+N + + +F
Sbjct: 269 CFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCL 328
Query: 254 -VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW-------------------------- 286
V ALI +Y K ++EA FY ++++TW
Sbjct: 329 SVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVK 388
Query: 287 -----TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
T MI GLA G G+E L++F QM G +P + F L AC G + G QL
Sbjct: 389 NLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLH 448
Query: 342 RRMGGV-YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
++ + Y ++ + ++ + ++ G++ AE MP+ D +S+ ++++A
Sbjct: 449 AQLVHLGYESSLSVGN--AMISMYAKCGVVEAAESVFVTMPSVD-LVSWNSMIAA 500
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LHA + +S + VGN++I Y + + A +F MP D+ SWN++++
Sbjct: 444 GRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQ 503
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104
+ + LF Q++ EG+ D+IT + + +AC+ + G+
Sbjct: 504 HGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGR 546
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 249/470 (52%), Gaps = 9/470 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY---GRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
K +HA + L YV L+ + L + R+LF ++ + +W L+
Sbjct: 24 AKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFAWTALIRA 83
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEY 117
Y + L + + + T LFSACA + G +H +G
Sbjct: 84 YALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLLGGFSS 143
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L + NA++ MY KC + A +FDEM R+++S LI Y + + AR++FD +
Sbjct: 144 DLYVNNAVIDMYVKCGSLRCARMVFDEM-PERDVISWTGLIVAYTRIGDMRAARDLFDGL 202
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
KD+V W +M+ G + P +ALE+F+++ DEGV DE +V V+SAC+ L +Y
Sbjct: 203 PVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYAN 262
Query: 238 LVHRFILQNN---ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
+ R I +++ + + V +ALIDMYSKCG++EEA F ++V ++++MI G A
Sbjct: 263 WI-RDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFA 321
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
+G A+++FY M G+KPN TFV VL AC H+GL+ +G QLF M Y V PT
Sbjct: 322 IHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTA 381
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
E + C+ DLLSRAG L +A + ++ MP E + ALL A + D+ + + + +
Sbjct: 382 ELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFE 441
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
L + Y+LLSN YA G W +V++ R+ ++E +K PG S ++ K+
Sbjct: 442 LEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKN 491
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/466 (30%), Positives = 255/466 (54%), Gaps = 9/466 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H HV + + Y+ ++H T A +F ++ ++ N ++ Y
Sbjct: 33 VHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQ 92
Query: 65 SGEVLILFKQLI------FEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+ + ++ +++ +G D+ T L AC L GK VH + + G +
Sbjct: 93 HRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDS 152
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
++N+L+ MY + ++ A ++FDEM R++VS N+LI+ + + + A +F+ +
Sbjct: 153 SAIVQNSLIEMYTRAGDLALAHKVFDEM-RERDVVSWNMLISAHARLGQMRKATALFNSM 211
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
DK IV W +M+ G A++ F+ M EG PD+ +V+VL AC+ L L+ GR
Sbjct: 212 PDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGR 271
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
++ + ++ + + AL++MY+KCG +++AL F KDV++W+T+I GLA +G
Sbjct: 272 WIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHG 331
Query: 298 LGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
+EA+ +F +ME++G ++PN TFV +L+AC ++GL+ EG F RM VY V+P +EH
Sbjct: 332 RAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEH 391
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL R+G + +A + ++ MP + +LLSAC ++ + D A +++L
Sbjct: 392 YGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVELE 451
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
V+L+N YA W++VA R+ ++ RK PG S+I++
Sbjct: 452 PDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEV 497
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 142/337 (42%), Gaps = 78/337 (23%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
+GK +H HV ++ DS V NSLI Y R A +FD+M RDV SWN L+S
Sbjct: 137 LGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHA 196
Query: 58 ----------IYNDFSD----------SGEVLI--------LFKQLIFEGIVADKITLVI 89
++N D SG + F+ + EG D +++V
Sbjct: 197 RLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVA 256
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ ACA+L L G+ ++ Y + G+ ++ NAL+ MYAKC +D+AL+LFD M
Sbjct: 257 VLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMA--- 313
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
DKD++ W +++ G + EA+ LF +M
Sbjct: 314 -----------------------------DKDVISWSTVIGGLAAHGRAHEAVWLFTEME 344
Query: 210 DEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF-VKTA------LIDM 261
EG V P+ V +LSACS Y LV + + D + V+ ++D+
Sbjct: 345 KEGKVRPNVITFVGLLSACS------YAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDL 398
Query: 262 YSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYG 297
+ G + AL D W +++ ++G
Sbjct: 399 LGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHG 435
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 149/462 (32%), Positives = 238/462 (51%), Gaps = 33/462 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +H + + +SD++V N L+ Y + A +F ++ R + SW +++S Y
Sbjct: 191 MGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYA 250
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E L +F ++ + D I LV + A +E L +GK++H K+GLE +
Sbjct: 251 QNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFD 310
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +L +YAKC V +AR F+++ +
Sbjct: 311 LLISLTSLYAKCGH--------------------------------VMVARLFFNQVENP 338
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ W +M+ G VK EEA+ELF+ M + + PD + S ++AC+ + +L+ R +
Sbjct: 339 SLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMD 398
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I + D V T+LID Y+KCGS++ A F + KDVV W+ M+ G +G G
Sbjct: 399 EYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGR 458
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
E++ +F+ M + G+ PN+ TFV +L AC++SGL+ EG LF RM Y ++P +H+ C+
Sbjct: 459 ESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYACV 517
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +A F+ MP E + ALLSAC + LG+ A + L +
Sbjct: 518 VDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNT 577
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YV LSN YA W VA+ R M+E K G S+I++
Sbjct: 578 GHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEI 619
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 95/171 (55%)
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
L+N ++ V AR++FD+ D D+ LW +++ + A+E++ +M V+PD
Sbjct: 113 LVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPD 172
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
VL ACS+L L+ GR VH I ++ D FV+ L+ +Y+KCG + A F
Sbjct: 173 GFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFG 232
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+ + +V+WT++I G A G EALR+F +M + ++P+ VSVL A
Sbjct: 233 RLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRA 283
>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Glycine max]
Length = 723
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 152/496 (30%), Positives = 247/496 (49%), Gaps = 67/496 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + ++++ ++V N+L+ YGR AR LFD MP RD SWNT++S Y
Sbjct: 201 GLEVHRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYAS 260
Query: 62 FSDSGEVLILFKQLIFEG----------------------------------IVADKITL 87
E LF + EG I D I +
Sbjct: 261 RGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAM 320
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
V+ +AC+ + + GK +H +A + + N++NAL+ MY++C+++ A LF
Sbjct: 321 VVGLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHR--- 377
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
+K ++ W +M+ G + EE LF++
Sbjct: 378 -----------------------------TEEKGLITWNAMLSGYAHMDRYEEVTFLFRE 408
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD-AFVKTALIDMYSKCG 266
M+ EG+ P+ + SVL C+ ++NLQ+G+ H +I+++ ++ + AL+DMYS+ G
Sbjct: 409 MLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSG 468
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+ EA F +D VT+T+MI G G G L++F +M + IKP+ T V+VL
Sbjct: 469 RVLEARKVFDSLTKRDEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLT 528
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC HSGL+ +G LF+RM V+ + P +EH+ C+ DL RAGLL +A+EFI MP +
Sbjct: 529 ACSHSGLVAQGQVLFKRMIDVHGIVPRLEHYACMADLFGRAGLLNKAKEFITGMPYKPTS 588
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
+ LL AC + ++G+ A ++++ YVL++N YA G W ++AE R M
Sbjct: 589 AMWATLLGACRIHGNTEMGEWAAGKLLEMKPDHSGYYVLIANMYAAAGSWRKLAEVRTYM 648
Query: 447 KELQTRKKPGNSIIDL 462
+ L RK PG + +D+
Sbjct: 649 RNLGVRKAPGCAWVDV 664
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 115/418 (27%), Positives = 204/418 (48%), Gaps = 7/418 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LHA V LD + + + L++FY + L DA+ + + D WN L+S Y
Sbjct: 100 GKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTLDPLHWNLLISAYVR 159
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L ++K ++ + I D+ T + AC + G VH +E+ L +
Sbjct: 160 NGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFV 219
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF----DEI 177
NAL+ MY + +++ A LFD M RR+ VS N +I+ Y + A ++F +E
Sbjct: 220 HNALVSMYGRFGKLEIARHLFDNM-PRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEG 278
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
V+ ++++W ++ GC+ + AL+L +M + D MV L+ACS + ++ G+
Sbjct: 279 VEMNVIIWNTIAGGCLHSGNFRGALQLISQM-RTSIHLDAIAMVVGLNACSHIGAIKLGK 337
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H ++ VK ALI MYS+C L A + F++T+ K ++TW M+ G A+
Sbjct: 338 EIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMD 397
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
E +F +M ++G++PN T SVL C + G + + + + + +
Sbjct: 398 RYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLW 457
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
LVD+ SR+G + +A + + D+ ++Y +++ E + K+ M KL
Sbjct: 458 NALVDMYSRSGRVLEARKVFDSLTKRDE-VTYTSMILGYGMKGEGETTLKLFEEMCKL 514
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 141/334 (42%), Gaps = 68/334 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H H +T D V N+LI Y R A +LF + + + +WN ++S Y
Sbjct: 335 LGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGLITWNAMLSGYA 394
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL--EYM 118
EV LF++++ EG+ + +T+ + CAR+ L +GK HCY K EY+
Sbjct: 395 HMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYL 454
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
L + NAL+ MY++ + EA ++FD + R
Sbjct: 455 L-LWNALVDMYSRSGRVLEARKVFDSLTKR------------------------------ 483
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
D V + SM+ G + E L+LF++M + PD MV+VL+ACS + G++
Sbjct: 484 --DEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQV 541
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+ + +ID++ LE + M + GL
Sbjct: 542 LFK---------------RMIDVHGIVPRLEH---------------YACMADLFGRAGL 571
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
N+A M KP A + ++L ACR G
Sbjct: 572 LNKAKEFITGMP---YKPTSAMWATLLGACRIHG 602
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 3/230 (1%)
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDE---MGSRRNIVSLNILINGYIDMELVDLAREVF 174
+L+ +LLL K + + +L + +G +N + ++ L+N Y ++ L+ A+ V
Sbjct: 80 LLHPIGSLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVT 139
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
+ D + W ++ V+ EAL ++K M+++ + PDE SVL AC +
Sbjct: 140 ESSNTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFN 199
Query: 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
G VHR I +++ FV AL+ MY + G LE A F +D V+W T+I A
Sbjct: 200 SGLEVHRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYA 259
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
+ G+ EA ++F M+ +G++ N + ++ C HSG QL +M
Sbjct: 260 SRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQM 309
>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
Length = 673
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 153/464 (32%), Positives = 243/464 (52%), Gaps = 23/464 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK HA + K + D +GN+L Y + + F + +DV SW T++S
Sbjct: 99 LGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACG 158
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D +G L LF +++FE + + TL + S C+ ++ G VH +TK+G E L
Sbjct: 159 DNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLR 218
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ +Y KC +DEA LF+ M +N+++ N +I G+ + +DLA++ F
Sbjct: 219 ITNSLVYLYLKCGCIDEAKNLFNRM-EYKNLITWNAMIAGH--AQAMDLAKDNF------ 269
Query: 181 DIVLWRSMMHGCVKAKQP-EEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
A+Q EAL ++ K+ G PD + S+L+ CS L+ L+ G +
Sbjct: 270 -------------SAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQI 316
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +++ D V TAL+DMY KCGS+E A F + +++WT+MI A +G
Sbjct: 317 HAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQS 376
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
AL++F M G +PN+ TFV VLAAC H+G++ E + F M Y+++P ++H+ C
Sbjct: 377 QHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGC 436
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
LVD+ R G L +A + IK M E + L++ C + +LG A ++KL +S
Sbjct: 437 LVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEELGFYAAEQLLKLKPRS 496
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
E YV+L N Y W +V+ RR MKE + K S I +K
Sbjct: 497 TETYVVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWSRISIK 540
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 163/347 (46%), Gaps = 43/347 (12%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HAHV KT + +V + L++ Y + + +AR +FD +P R+V W TLM+ Y S
Sbjct: 2 VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQ 61
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
+ +F ++ G TL I +AC+ LE + GK H + K + + ++ NA
Sbjct: 62 PEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNA 121
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L +Y+K +D +++ F E G +KD++
Sbjct: 122 LCSLYSKFGSLDSSVKAFRETG--------------------------------EKDVIS 149
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +++ C + L LF +M+ E V P++ + SVLS CS++ + G VH
Sbjct: 150 WTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLST 209
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA--------NY 296
+ + + +L+ +Y KCG ++EA F + + K+++TW MI G A N+
Sbjct: 210 KLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNF 269
Query: 297 G---LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
G EAL ++ ++ R G KP+ T S+L C + +G Q+
Sbjct: 270 SAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQI 316
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 2/159 (1%)
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+VH +++ ++ FV + L+++Y+KCG + A F ++VV WTT++ G
Sbjct: 1 MVHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNS 60
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
A+ VF M G P+ T L AC IT G Q F YR+
Sbjct: 61 QPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQ-FHAFIIKYRISHDSSIG 119
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
L L S+ G L + + + E IS+ ++SAC
Sbjct: 120 NALCSLYSKFGSLDSSVKAFR-ETGEKDVISWTTIISAC 157
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 153/418 (36%), Positives = 242/418 (57%), Gaps = 9/418 (2%)
Query: 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK---LHYGKTVH 107
SW + +S + ++ + F Q++ + + ITL+ L SACA + +G +H
Sbjct: 54 SWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAALH 113
Query: 108 CYATKVGLEYMLN---MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM 164
+A K G + +N + AL+ MYAKC ++D A +FD+MG R N+VS N +I+GY+
Sbjct: 114 THAFKHG--FAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVR-NLVSWNTMIDGYMKN 170
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
VD A ++FD++ K++V W ++ G VK + EEALE F++M GV PD +++++
Sbjct: 171 GDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAII 230
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
SAC++L L G VHR +++ + V +LIDMY++CG +E A F +++V
Sbjct: 231 SACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLV 290
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344
+W ++I G A GL ++AL F M+++G++PN ++ S L AC H+GLI EG ++F +
Sbjct: 291 SWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADI 350
Query: 345 GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDL 404
+R P IEH+ CLVDL SRAG L +A + IK MP + +LL+AC T + +L
Sbjct: 351 KRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVEL 410
Query: 405 GKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+KV ++L YVL SN YA G W ++ RR MKE +K S I++
Sbjct: 411 AEKVMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSSIEI 468
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 145/364 (39%), Gaps = 99/364 (27%)
Query: 2 GKGLHAHVTKTALD-SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G LH H K +D+ VG +LI Y + AR++FD+M R++ SWNT++ Y
Sbjct: 109 GAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYM 168
Query: 61 DFSDSGEVLILFKQLIFE-------------------------------GIVADKITLVI 89
D + L LF +L + G+V D +T++
Sbjct: 169 KNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIA 228
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA L L G VH K + + N+L+ MYA+C ++ A ++FD M S+R
Sbjct: 229 IISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGM-SQR 287
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N+VS N +I G+ L D +AL F+ M
Sbjct: 288 NLVSWNSIIVGFAVNGLAD-------------------------------KALSFFRSMK 316
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA-LIDMYSKCGSL 268
EG+ P+ S L+ACS + G + I +++ L+D+YS+ G L
Sbjct: 317 KEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRL 376
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
+EA DV+ M+ PNE S+LAAC
Sbjct: 377 KEAW---------DVIKKMPMM-------------------------PNEVVLGSLLAAC 402
Query: 329 RHSG 332
R G
Sbjct: 403 RTQG 406
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 11/180 (6%)
Query: 1 MGKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
+G GL H V K ++ V NSLI Y R AR +FD M R++ SWN+++
Sbjct: 239 LGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVG 298
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHC-----YATKV 113
+ + + L F+ + EG+ + ++ +AC+ + G + +
Sbjct: 299 FAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSP 358
Query: 114 GLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
+E+ L+ +Y++ + EA + +M N V L L+ V+LA +V
Sbjct: 359 RIEHY----GCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELAEKV 414
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 156/487 (32%), Positives = 252/487 (51%), Gaps = 33/487 (6%)
Query: 7 AHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSG 66
A + KT+L+ D + N I A +M +V +N L + S
Sbjct: 49 AAMIKTSLNQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPI 108
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
L L+ +++ + + T L A + + +G+++ + K G + + ++ L+
Sbjct: 109 RSLELYVRMLRDSVSPSSYTYSSLVKASSFASR--FGESLQAHIWKFGFGFHVKIQTTLI 166
Query: 127 LMYAKCKEMDEALRLFDEMGSR------------------------------RNIVSLNI 156
Y+ + EA ++FDEM R +N + N
Sbjct: 167 DFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNC 226
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
LINGY+ + ++ A +F+++ KDI+ W +M+ G + K+ EA+ +F KM++EG+ PD
Sbjct: 227 LINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPD 286
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
E M +V+SAC+ L L+ G+ VH + LQN D ++ +AL+DMYSKCGSLE AL+ F+
Sbjct: 287 EVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFF 346
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
K++ W ++IEGLA +G EAL++F +ME + +KPN TFVSV AC H+GL+ E
Sbjct: 347 NLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDE 406
Query: 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
G +++R M Y + +EH+ +V L S+AGL+Y+A E I M E + + ALL C
Sbjct: 407 GRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGC 466
Query: 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK-P 455
+ + + N +M L + Y LL + YA + W +VAE R M+EL K P
Sbjct: 467 RIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICP 526
Query: 456 GNSIIDL 462
G S I +
Sbjct: 527 GTSSIRI 533
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 143/355 (40%), Gaps = 96/355 (27%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ L AH+ K + + +LI FY +AR +FD+MP RD +W T++S Y
Sbjct: 143 GESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRR 202
Query: 60 -----------NDFSDSGEV----LI--------------LFKQLIFEGIVA-------- 82
N S+ E LI LF Q+ + I++
Sbjct: 203 VLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGY 262
Query: 83 -----------------------DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
D++T+ + SACA L L GK VH Y + G +
Sbjct: 263 SQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDV 322
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ +AL+ MY+KC ++ AL VF +
Sbjct: 323 YIGSALVDMYSKCGSLERALL--------------------------------VFFNLPK 350
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K++ W S++ G +EAL++F KM E V P+ VSV +AC+ + GR +
Sbjct: 351 KNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRI 410
Query: 240 HRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEG 292
+R ++ + +I + ++ ++SK G + EAL + + + V W +++G
Sbjct: 411 YRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDG 465
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + + D+Y+G++L+ Y + A ++F +P +++ WN+++
Sbjct: 305 IGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLA 364
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHC-----YATKVGL 115
+ E L +F ++ E + + +T V +F+AC + G+ ++ Y+ +
Sbjct: 365 AHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNV 424
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
E+ ++ +++K + EAL L M N V L++G
Sbjct: 425 EHY----GGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDG 465
>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Glycine max]
Length = 628
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 148/467 (31%), Positives = 250/467 (53%), Gaps = 41/467 (8%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H + K L+ D++VG++L++ Y + +A +F+++P RDV WN +++ +
Sbjct: 154 IHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGR 213
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E L +F+++ G+V + T+ + S + + G+ VH + TK+G E + + NA
Sbjct: 214 FEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNA 273
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MY KCK + +AL +F E+ DEI DI
Sbjct: 274 LIDMYGKCKCVGDALSVF-----------------------------EMMDEI---DIFS 301
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W S+M + L LF +M+ V PD + +VL AC+ L+ L +GR +H ++
Sbjct: 302 WNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYM 361
Query: 244 LQNNITQ--------DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
+ N + + D + AL+DMY+KCG++ +A + F KDV +W MI G
Sbjct: 362 VVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGYGM 421
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
+G G EAL +F +M + + PNE +FV +L+AC H+G++ EG M Y V P+IE
Sbjct: 422 HGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIE 481
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
H+ C++D+L RAG L +A + + MP + + +++LL+AC +++ DL + A+ +++L
Sbjct: 482 HYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAACRLHNDTDLAEVAASKVIEL 541
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVL+SN Y + G + EV E R MK+ +K+PG S I+L
Sbjct: 542 EPDHCGNYVLMSNVYGVVGRYEEVLEWRYTMKQQNVKKRPGCSWIEL 588
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 135/302 (44%), Gaps = 47/302 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H VTK +S + V N+LI YG+ DA +F+ M D+ SWN++MS++
Sbjct: 252 GRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHER 311
Query: 62 FSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGL----- 115
D L LF +++ V D +T+ + AC L L +G+ +H Y GL
Sbjct: 312 CGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEES 371
Query: 116 -----EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLA 170
+ +LN NAL+ MYAKC M +A +F M +++ S NI+I GY
Sbjct: 372 HDVFDDVLLN--NALMDMYAKCGNMRDARMVFVNM-REKDVASWNIMITGY--------- 419
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230
MHG EAL++F +M + P+E V +LSACS
Sbjct: 420 -----------------GMHG-----YGGEALDIFSRMCQAQMVPNEISFVGLLSACSHA 457
Query: 231 SNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTT 288
++ G + + ++ T +IDM + G L EA K D V W +
Sbjct: 458 GMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRS 517
Query: 289 MI 290
++
Sbjct: 518 LL 519
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 102/245 (41%), Gaps = 32/245 (13%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D T + +CA L GK +H + K +L+ MY+KC +D +LR+F
Sbjct: 28 DLGTCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVF 87
Query: 143 D-EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
+ +N+ + N LI G++ L P+ A
Sbjct: 88 NFPTHHNKNVFAYNALIAGFLANAL-------------------------------PQRA 116
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
L L+ +M G+ PD+ V+ AC + +H + + + D FV +AL++
Sbjct: 117 LALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKIHGLMFKVGLELDVFVGSALVNT 176
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y K + EA F + +DVV W M+ G A G EAL VF +M G+ P T
Sbjct: 177 YLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTV 236
Query: 322 VSVLA 326
VL+
Sbjct: 237 TGVLS 241
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL- 272
T D ++ L +C+ +NL G+ +H +L+N T+LI+MYSKC ++ +L
Sbjct: 26 TYDLGTCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLR 85
Query: 273 -VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
F K+V + +I G L AL ++ QM GI P++ TF V+ AC
Sbjct: 86 VFNFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRAC--- 142
Query: 332 GLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAED 384
G +G + + G +++V ++ FV LV+ + + +A + +P D
Sbjct: 143 GDDDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRD 197
>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 157/461 (34%), Positives = 241/461 (52%), Gaps = 32/461 (6%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +H + K DSD Y+G +L+ Y + L DAR +F+ +P +D+ WN L+S +
Sbjct: 325 RQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHG 384
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
GE L LF ++ EG ++ TL + + A LE + VH A K+G ++
Sbjct: 385 GCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVV 444
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N L+ Y KC LR A +VF+E +I
Sbjct: 445 NGLIDSYWKCN----CLRY----------------------------ANKVFEEHSSDNI 472
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
+ + SM+ + E+A++LF +M+ +G+ PD V+ S+L+AC+SLS + G+ VH
Sbjct: 473 IAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 532
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+++ D F AL+ Y+KCGS+E+A + F K VV+W+ MI GLA +G G A
Sbjct: 533 LIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRA 592
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L VF +M + I PN T SVL AC H+GL+ E F M ++ + T EH+ C++D
Sbjct: 593 LDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMID 652
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL RAG L A E + MP E + ALL+A + + +LGK A + L +
Sbjct: 653 LLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGT 712
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLL+N YA G W EVA+ R+ MK+ + +K+P S ++LK
Sbjct: 713 HVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELK 753
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 122/401 (30%), Positives = 189/401 (47%), Gaps = 46/401 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +HAH+ K+ L N L+ FY + L AR +FD+ P SW++L++ Y+
Sbjct: 22 LGAHIHAHLLKSGLLHAFR--NHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYS 79
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + E L F+ + G+ ++ L I+ CA L G VH A GL +
Sbjct: 80 NNALPREALAAFRAMRARGVRCNEFALPIVLK-CAPDAGL--GVQVHAVAVSTGLSGDIF 136
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV-D 179
+ NAL+ MY VD AR VFDE D
Sbjct: 137 VANALVAMYG--------------------------------GFGFVDEARRVFDEAARD 164
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
++ V W MM VK + +A+ELF +M+ GV P+E V++AC+ +L+ GR V
Sbjct: 165 RNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKV 224
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +++ +D F AL+DMYSK G + A + F K DVV+W I G +G
Sbjct: 225 HAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHD 284
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH--- 356
AL + QM+ G+ PN T S+L AC +G L R++ G + ++ +
Sbjct: 285 QHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAF--ALGRQIHG-FMIKACADSDDY 341
Query: 357 -FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
V LVD+ ++ GLL A + + +P +D + + AL+S C
Sbjct: 342 IGVALVDMYAKYGLLDDARKVFEWIPRKDLLL-WNALISGC 381
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 34/341 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HA V +T D D++ N+L+ Y ++ A ++F K+P DV SWN +S
Sbjct: 221 GRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVL 280
Query: 62 FSDSGEVLILFKQLIFEGIVADKITL--VILFSACARLEKLHYGKTVHCYATKVGLEYML 119
L L Q+ G+V + TL ++ A A G+ +H +
Sbjct: 281 HGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGF---------- 330
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
M C + D+ + + L++ Y L+D AR+VF+ I
Sbjct: 331 --------MIKACADSDDYIGV--------------ALVDMYAKYGLLDDARKVFEWIPR 368
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KD++LW +++ GC E+L LF +M EG + + +VL + +SL + V
Sbjct: 369 KDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQV 428
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + D+ V LID Y KC L A F + +++ +T+MI L+ G
Sbjct: 429 HALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHG 488
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
+A+++F +M RKG++P+ S+L AC +G Q+
Sbjct: 489 EDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQV 529
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
E + +L+ ++ +L G +H +L++ + AF + L+ YSKC A F +
Sbjct: 5 ESISPLLTRYAATQSLFLGAHIHAHLLKSGLLH-AF-RNHLLSFYSKCRLPGSARRVFDE 62
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
T V+W++++ +N L EAL F M +G++ NE VL +GL
Sbjct: 63 TPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGL 118
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 243/460 (52%), Gaps = 41/460 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH + +D D+YVG SLI YG+ DAR +FD M R+V SW ++ Y
Sbjct: 147 GKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVA 206
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D E LF ++ + +
Sbjct: 207 VGDVVEARKLFDEMPHRNVAS--------------------------------------- 227
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N++L + K ++ A +FD M +N+VS +I+GY + AR +FD ++KD
Sbjct: 228 WNSMLQGFVKMGDLSGARGVFDAM-PEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKD 286
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +++ G V+ P +AL +F +M V PDE ++VS++SA + L +L+ + V
Sbjct: 287 VVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDS 346
Query: 242 FILQNNIT-QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ + I Q V AL+DM +KCG++E AL F + +DVV + +MI+GL+ +G G
Sbjct: 347 YVSKICIDLQQDHVIAALLDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGE 406
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EA+ +F +M +G+ P+E F +L AC +GL+ EG F+ M Y + P +H+ C+
Sbjct: 407 EAVNLFNRMLMEGLTPDEVAFTVILTACSRAGLVDEGRNYFQSMKQKYCISPLPDHYACM 466
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLLSR+G + A E IK++P E ++ ALL AC Y + +LG+ VAN + +L +
Sbjct: 467 VDLLSRSGHIRDAYELIKLIPWEPHAGAWGALLGACKLYGDSELGEIVANRLFELEPLNA 526
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
YVLLS+ YA W +V+ R M+E + RK PG+S I
Sbjct: 527 ANYVLLSDIYAAAERWIDVSLVRSKMRERRVRKIPGSSKI 566
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 26/234 (11%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A VF ++ VLW +++ + L F +M G PD SV+ ACS
Sbjct: 81 ASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSG 140
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
+ G+ +H + + QD +V T+LIDMY KCG + +A F ++VV+WT M
Sbjct: 141 TCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAM 200
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG---- 345
+ G G EA ++F +M + N A++ S+L Q F +MG
Sbjct: 201 LVGYVAVGDVVEARKLFDEMPHR----NVASWNSML-------------QGFVKMGDLSG 243
Query: 346 --GVYRVQP--TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
GV+ P + F ++D ++AG + A F+ E +++ AL+S
Sbjct: 244 ARGVFDAMPEKNVVSFTTMIDGYAKAGDM-AAARFLFDCSLEKDVVAWSALISG 296
>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
Length = 886
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 149/463 (32%), Positives = 256/463 (55%), Gaps = 24/463 (5%)
Query: 2 GKGLHAHVTKT-ALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
GK LHA+ K +LD + +VG++L+ Y +FD M R +G WN +++ Y
Sbjct: 317 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYA 376
Query: 61 DFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L+LF ++ G++A+ T+ + AC R + +H + K GL+
Sbjct: 377 QNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDR 436
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++NAL+ MY++ ++D A R+F +M R++V+ N +I GY VF E +
Sbjct: 437 FVQNALMDMYSRLGKIDIAKRIFGKM-EDRDLVTWNTIITGY-----------VFSERHE 484
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
+++ M ++ K E A + + P+ ++++L +C++LS L G+ +
Sbjct: 485 DALLMLHKMQ--ILERKASERASRV-------SLKPNSITLMTILPSCAALSALAKGKEI 535
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + ++NN+ D V +AL+DMY+KCG L+ + F + ++V+TW ++ +G
Sbjct: 536 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNS 595
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+A+ + M +G+KPNE TF+SV AAC HSG++ EG ++F M Y V+P+ +H+ C
Sbjct: 596 QDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYAC 655
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAE-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
+VDLL RAG + +A + I ++P DK ++ +LL AC ++ ++G+ A N+++L
Sbjct: 656 VVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPN 715
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YVLL+N Y+ G W + E RRNMK RK+PG S I+
Sbjct: 716 VASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIE 758
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 188/399 (47%), Gaps = 57/399 (14%)
Query: 1 MGKGLHAH-VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
MGK +HA+ + K L+S ++ N+L+ YG+M ++VL RD+ +WNT++S
Sbjct: 216 MGKQVHAYGLRKGELNS--FIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSL 273
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYM 118
E L ++++ EG+ D T+ + AC+ LE L GK +H YA K G L+
Sbjct: 274 CQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 333
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ +AL+ MY CK++ R+FD M
Sbjct: 334 SFVGSALVDMYCNCKQVLSGCRVFDGM--------------------------------F 361
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGR 237
D+ I LW +M+ G + + EEAL LF +M + G+ + M V+ AC
Sbjct: 362 DRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKE 421
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+H F+++ + +D FV+ AL+DMYS+ G ++ A F K + +D+VTW T+I G
Sbjct: 422 AIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSE 481
Query: 298 LGNEALRVFYQME-----------RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
+AL + ++M+ R +KPN T +++L +C + +G ++
Sbjct: 482 RHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIH----- 536
Query: 347 VYRVQPTIEHFV----CLVDLLSRAGLLYQAEEFIKIMP 381
Y ++ + V LVD+ ++ G L + + +P
Sbjct: 537 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 575
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 185/405 (45%), Gaps = 49/405 (12%)
Query: 1 MGKGLHAHVTKTALDSD-IYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+GK +HAHV K D + V N+L++ Y + F +FD++ R+ SWN+L+S
Sbjct: 111 LGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSL 170
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL---EKLHYGKTVHCYATKVGLE 116
F L F+ ++ E + TLV + AC+ E L GK VH Y + G E
Sbjct: 171 CSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-E 229
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ N L+ MY K MG + S +L+ +
Sbjct: 230 LNSFIINTLVAMYGK-------------MG---KLASSKVLLGSF--------------- 258
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+D+V W +++ + +Q EALE ++M+ EGV PD + SVL ACS L L+ G
Sbjct: 259 -EGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTG 317
Query: 237 RLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
+ +H + L+N ++ +++FV +AL+DMY C + F + + W MI G A
Sbjct: 318 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQ 377
Query: 296 YGLGNEALRVFYQMERK-GIKPNEATFVSVLAACRHSGLIT--EGCQLFRRMGGVYRVQP 352
EAL +F +ME G+ N T V+ AC SG + E F G+ R
Sbjct: 378 NEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDR--- 434
Query: 353 TIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ FV L+D+ SR G + A+ M D +++ +++
Sbjct: 435 --DRFVQNALMDMYSRLGKIDIAKRIFGKMEDRD-LVTWNTIITG 476
>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 610
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/461 (32%), Positives = 250/461 (54%), Gaps = 3/461 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS-IYND 61
+G+HA + K L +L+ Y + L DA LFD+ P RD+ +++L++ + +
Sbjct: 23 RGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHS 82
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S + IL L + + D + + S ARL G+ +H + +
Sbjct: 83 ASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVV 142
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+++L+ MY KC D+ ++FD M S +N V L++GY + A ++F + ++
Sbjct: 143 KSSLVDMYCKCGSPDDGRKVFDSM-SAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRN 201
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS-VLSACSSLSNLQYGRLVH 240
+ W +++ G V + A+ELF +M +GV D+ ++S V+ + L+ GR +H
Sbjct: 202 LFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLH 261
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ + V ALIDMYSKC + A F +DV++WTTM+ G A +G
Sbjct: 262 GSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAE 321
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL ++ +M G KPNE TFV ++ AC H+GL+ +G QLF M Y + P ++H+ C
Sbjct: 322 EALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCY 381
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLLSR+G L +AEE + MP E ++ ALLSAC Y + ++ ++++ +++L +
Sbjct: 382 LDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDS 441
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
Y+LLSN YA+ G W VA+ R+ M L+ RK+PG S I+
Sbjct: 442 STYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIE 482
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 137/340 (40%), Gaps = 68/340 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LHAH + + D V +SL+ Y + D R +FD M ++ W L+S Y
Sbjct: 123 LGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYA 182
Query: 61 DFSDSGEVLILFKQL----------IFEGIVA----------------------DKITLV 88
S E L LF+ + + G+V D L
Sbjct: 183 SNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLS 242
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
I+ A L G+ +H ++G + + NAL+ MY+KC
Sbjct: 243 IVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCS--------------- 287
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+I+S AREVF+ I +D++ W +M+ G + + EEAL L+ +M
Sbjct: 288 -DILS----------------AREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRM 330
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGS 267
+ G P+E V ++ ACS +Q GR L + IT T +D+ S+ G
Sbjct: 331 VLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGH 390
Query: 268 LEEA--LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
L EA L+T + D TW ++ Y +R+
Sbjct: 391 LLEAEELMTTMPYE-PDEATWGALLSACTKYKDAEMCIRI 429
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 4/185 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH + S++ VGN+LI Y + + AR +F+ + FRDV SW T++
Sbjct: 256 LGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEA 315
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYML 119
+ E L L+ +++ G +++T V L AC+ + G+ + + G+ L
Sbjct: 316 QHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRL 375
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAREVFDE 176
L + ++ + EA L M + + L++ Y D E+ + E
Sbjct: 376 QHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLE 435
Query: 177 IVDKD 181
+ KD
Sbjct: 436 LRPKD 440
>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 582
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 213/398 (53%), Gaps = 5/398 (1%)
Query: 68 VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLL 127
L LF L+ G D I + + CAR +H +A K G + N L+
Sbjct: 59 ALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNGLIH 118
Query: 128 MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRS 187
Y+ C + +A ++FD G ++++ N L+ GY RE F ++ +D V W +
Sbjct: 119 AYSVCGMLFDARKVFDH-GPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSWNT 177
Query: 188 MMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
++ CV + EEA+ +F++M+ PD +VSV+SA + L L G H ++ +
Sbjct: 178 VIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVCRK 237
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDVVTWTTMIEGLANYGLGNEALR 304
I D + +ALI+MYSKCG +E A+ F + C + V TW M+ G G AL
Sbjct: 238 EIEVDEKLSSALINMYSKCGFIEGAVYVF-ENSCALRSVDTWNAMLAGFTASGCSERALE 296
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
+F +ME G PN+ TF ++L AC H G + EG F RM ++P I H+ C+VDL
Sbjct: 297 LFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDLF 356
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
RAGL +AEE I++MP E +KAL+ AC TYS F+LGKK + +++ H YV
Sbjct: 357 CRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPNDHAGYV 416
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
LLSN YAL+G+W V + R+ M +K PG+S I+L
Sbjct: 417 LLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIEL 454
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 137/336 (40%), Gaps = 70/336 (20%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD---------------------- 42
LH H K S V N LIH Y + DAR +FD
Sbjct: 97 LHGHAAKRGAASHRRVRNGLIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRD 156
Query: 43 ---------KMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG-IVADKITLVILFS 92
+MP RD SWNT+++ + E + +F++++ D++TLV + S
Sbjct: 157 TGALREFFAQMPARDSVSWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVIS 216
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152
A A L L G H Y + +E + +AL+ MY+KC ++ A+ +F+ + R++
Sbjct: 217 AIAYLGALAQGLWAHAYVCRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVD 276
Query: 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
+ N ++ G+ GC E ALELF +M G
Sbjct: 277 TWNAMLAGFT--------------------------ASGC-----SERALELFTRMESSG 305
Query: 213 VTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
P++ ++L+ACS ++ G R ++I D ++D++ + G E+A
Sbjct: 306 FVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDLFCRAGLFEKA 365
Query: 272 --LVTFYKTDCKDVVTWTTMIEGL---ANYGLGNEA 302
++ + D W ++ +N+ LG +A
Sbjct: 366 EEMIQMMPME-PDAAVWKALVGACRTYSNFELGKKA 400
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 1 MGKGL--HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLF-DKMPFRDVGSWNTLMS 57
+ +GL HA+V + ++ D + ++LI+ Y + A +F + R V +WN +++
Sbjct: 224 LAQGLWAHAYVCRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLA 283
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
+ S L LF ++ G V +KIT L +AC+
Sbjct: 284 GFTASGCSERALELFTRMESSGFVPNKITFNTLLNACS 321
>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 660
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 165/498 (33%), Positives = 253/498 (50%), Gaps = 40/498 (8%)
Query: 3 KGLHAHV-TKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LH V L + VG L+ Y AR +FD++ ++V +N ++ Y +
Sbjct: 38 KKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVN 97
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L+++K + +G V D T + A +R + L G +H K+GL+ L +
Sbjct: 98 NHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYV 157
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI-------------DMELVD 168
N L+ MY KCK + EA ++ DE+ R ++VS N +++ Y +ME ++
Sbjct: 158 GNGLIAMYGKCKSLKEAQQVLDEIPCR-DVVSWNSMVSVYAQNGRFNDALELCREMEALN 216
Query: 169 L------------------------AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
L +E+F ++ K ++ W M+ V P+EA+ L
Sbjct: 217 LKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVL 276
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264
+ +M GV PD +VSVL A LS L GR VH+F + + + ++ ALIDMY+K
Sbjct: 277 YSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAK 336
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
CG L +A F + +DVV+WT++I G G +A+ VF +M G+ P+ FVSV
Sbjct: 337 CGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSV 396
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
LAAC H+GL+ +G F M + P +EHF C+VDLL RAG + +A FI+ MP E
Sbjct: 397 LAACSHAGLLDDGRYYFNLMAEC-GITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEP 455
Query: 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444
+ LLSAC YS ++G A+ ++ L + YVLLSN YA G W +VA R
Sbjct: 456 DERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRS 515
Query: 445 NMKELQTRKKPGNSIIDL 462
M+ +K PG S ++L
Sbjct: 516 IMERKGIKKLPGISNVEL 533
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 44/311 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H V K LD ++YVGN LI YG+ +A+ + D++P RDV SWN+++S+Y
Sbjct: 138 VGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYA 197
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL--EKLHYGKTVHCYATKVGLEYM 118
+ L L +++ + + T+ L A + + Y K + TK +
Sbjct: 198 QNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISW 257
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNILINGYIDME---------- 165
N ++ MY EA+ L+ +M G ++VS+ ++ Y D+
Sbjct: 258 ----NVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHK 313
Query: 166 ----------------LVDL---------AREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
L+D+ AR VF+++ +D+V W S++ K Q +
Sbjct: 314 FAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRD 373
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
A+ +F +M + G+ PD VSVL+ACS L GR + + IT ++D
Sbjct: 374 AVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAECGITPKLEHFACVVD 433
Query: 261 MYSKCGSLEEA 271
+ + G ++EA
Sbjct: 434 LLGRAGKIDEA 444
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 69/145 (47%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + L ++ + N+LI Y + DAR +F++M FRDV SW +++S Y
Sbjct: 307 LGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYG 366
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + +F ++ G+ D I V + +AC+ L G+ + G+ L
Sbjct: 367 KCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAECGITPKLE 426
Query: 121 MENALLLMYAKCKEMDEALRLFDEM 145
++ + + ++DEA +M
Sbjct: 427 HFACVVDLLGRAGKIDEAYGFIRQM 451
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 162/496 (32%), Positives = 262/496 (52%), Gaps = 43/496 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF---YGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+ +HA + KT L + + + LI F G A +F ++ + + L+ +
Sbjct: 23 RQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGF 82
Query: 60 NDFSDSGEVLILFKQLIF-----EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG 114
+D S+ E LIL+ +++ G+ + ++ + AC +L G+ VH K
Sbjct: 83 SDTSNPVESLILYARMLSCLNYSSGV---EFSIPSVLKACGKLLAFDEGRQVHGQVLKTH 139
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR-------------------------- 148
L + + N+++ MY E++ A R+FD M +R
Sbjct: 140 LWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFD 199
Query: 149 ----RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204
R++VS N +I+GY +LA +VF+ + DKD+V W SM+ V+ + P +AL+L
Sbjct: 200 EMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDL 259
Query: 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT-QDAFVKTALIDMYS 263
F++M+ G+ PD +VSVLSA + L ++ G+ +H ++ N I F+ +ALIDMYS
Sbjct: 260 FREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYS 319
Query: 264 KCGSLEEALVTFYK-TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
KCG +E A F + +++ W +MI GLA +GL EAL +F +MER I+PNE TF+
Sbjct: 320 KCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFL 379
Query: 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382
+L+ C H GL+ EG F M Y++ P I+H+ C++DL RAG L A I+ MP
Sbjct: 380 GLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPF 439
Query: 383 EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442
E +++KA+LSA + + ++GK A ++L +YVLLSN YA G W +VA+
Sbjct: 440 EADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKI 499
Query: 443 RRNMKELQTRKKPGNS 458
R M++ +K G S
Sbjct: 500 RLMMRQRGVKKIAGCS 515
>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Brachypodium distachyon]
Length = 849
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 162/539 (30%), Positives = 268/539 (49%), Gaps = 78/539 (14%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF---RDVGSWNTLMSI 58
G+ +H K+ D+ V N L+ Y + DA F + P R+V SWN ++
Sbjct: 184 GRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGG 243
Query: 59 YNDFSDSGEVLILFKQLIFE--GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
Y ++G L +++ E G+ AD+IT++ + C+ L +L + +H + + GL
Sbjct: 244 YARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLH 303
Query: 117 YMLNM-ENALLLMYAKCK-------------------------------EMDEALRLFDE 144
+M NAL+ Y +C E A+ LF E
Sbjct: 304 LTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFRE 363
Query: 145 M----GSRRNIVSLN---------------------ILING--------------YIDME 165
M G + + S+ IL NG YI
Sbjct: 364 MTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCG 423
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE--GVTPDEEVMVSV 223
LAR +FD + +KD V W +M+ G + P E+L+LF++M + G P S
Sbjct: 424 RESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSA 483
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
L ACS L ++ G+ +H F L+ ++ +D+F+ +++IDMYSKCGS+++A V F + KD
Sbjct: 484 LVACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDA 543
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
V+WT MI G A G G EA+ ++ +M R+G++P+ T++ +L AC H+G++ +G F+
Sbjct: 544 VSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQE 603
Query: 344 MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFD 403
M + +++ +EH+ C++ +LSRAG A +++MP E ++LSAC + E +
Sbjct: 604 MRNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVE 663
Query: 404 LGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
LGKKVA+ +++L E YVL SN YA W E+ + R+ +++ K+PG S ID+
Sbjct: 664 LGKKVADKLLELEPHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDI 722
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 155/336 (46%), Gaps = 42/336 (12%)
Query: 2 GKGLHAHVTKTAL-DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +HA K L D D +VGNSL+ YGR DA +F+ M R++ SWN LM+
Sbjct: 82 GRQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAA-- 139
Query: 61 DFSDSGEVLILFKQLI--FEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
+D L LF+ + G A D+ TLV + CA L G+ VH A K G +
Sbjct: 140 -VADPRRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDA 198
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ N L+ MYAKC EM +A F E G+ RN+VS N+++ GY A +
Sbjct: 199 APRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLR 258
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
E+ +M + GV DE M+SVL CS L L
Sbjct: 259 EM-----------------------------QMEERGVPADEITMLSVLPVCSGLPELAK 289
Query: 236 GRLVHRFILQN--NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
R +H F+++ ++T D V ALI Y +CG L A F K V +W +I
Sbjct: 290 LRELHAFVVRRGLHLTGD-MVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAH 348
Query: 294 ANYGLGNEALRVFYQMERK-GIKPNEATFVSVLAAC 328
A G + A+ +F +M G KP+ + S+L AC
Sbjct: 349 AQNGEASAAIELFREMTNACGQKPDWFSIGSLLLAC 384
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 133/293 (45%), Gaps = 52/293 (17%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIF--EGIVADKITLVILFSACARLEKLHYGKTVHCY 109
WN L++ + + L + +L+ +G+ D+ TL +C + G+ VH
Sbjct: 33 WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSC----RGDDGRQVHAV 88
Query: 110 ATKVGL-EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168
A K+GL + + N+L+ MY +C +D+A
Sbjct: 89 AAKLGLADGDPFVGNSLVSMYGRCGRVDDA------------------------------ 118
Query: 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE---GVTPDEEVMVSVLS 225
+VF+ + +++V W ++M P LELF+ +++ PDE +V+VL
Sbjct: 119 --EKVFEGMAGRNLVSWNALM---AAVADPRRGLELFRDCLEDLGGTAAPDEATLVTVLP 173
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC---KD 282
C++L+ + GR VH +++ V L+DMY+KCG + +A F + ++
Sbjct: 174 MCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRN 233
Query: 283 VVTWTTMIEGLANYGLGNEALRVF--YQMERKGIKPNEATFVSVLAACRHSGL 333
VV+W M+ G A G A + QME +G+ +E T +SVL C SGL
Sbjct: 234 VVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVC--SGL 284
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 20/221 (9%)
Query: 185 WRSMMHGCVKAKQPEEALELFKKMI--DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W ++ +A + +AL + +++ +GV PD + L +C GR VH
Sbjct: 33 WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRG----DDGRQVHAV 88
Query: 243 ILQNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + D FV +L+ MY +CG +++A F +++V+W ++ +A+ G E
Sbjct: 89 AAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRRGLE 148
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV-----YRVQPTIEH 356
R + P+EAT V+VL C G R + G+ + P + +
Sbjct: 149 LFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETG----RAVHGLAVKSGWDAAPRVSN 204
Query: 357 FVCLVDLLSRAGLLYQAE-EFIKIMPAEDK-FISYKALLSA 395
LVD+ ++ G + AE F++ P + +S+ +L
Sbjct: 205 V--LVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGG 243
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 102/224 (45%), Gaps = 16/224 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H K L D ++ +S+I Y + DARV FD++ +D SW +++ Y
Sbjct: 495 LGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYA 554
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV----GLE 116
E + L+ ++ EG+ D T + L AC L G C+ ++ +E
Sbjct: 555 VNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGL---CFFQEMRNLPKIE 611
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
L ++ M ++ +A+ L + M + L+ +++ V+L ++V D+
Sbjct: 612 AKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVELGKKVADK 671
Query: 177 IVD------KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
+++ + VL +M G ++Q +E ++ K + D GV
Sbjct: 672 LLELEPHKAEHYVLASNMYAG---SRQWDEMRKVRKMLRDAGVA 712
>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Brachypodium distachyon]
Length = 804
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 153/496 (30%), Positives = 256/496 (51%), Gaps = 39/496 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRM---ALFTDARVLFDKMPFRD--------VGS-- 51
LH V K + + V N+LI Y + + DAR + D+MP +D VG
Sbjct: 183 LHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVR 242
Query: 52 ---------------------WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
WN ++S Y E LF++++ + I D+ T L
Sbjct: 243 KGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSL 302
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYM----LNMENALLLMYAKCKEMDEALRLFDEMG 146
SACA +GK+VH ++ +++ L + NAL+ +Y+K ++ A ++FD M
Sbjct: 303 LSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSM- 361
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
+ +++VS N +++GYI+ +D A +F E+ K + W M+ G V E+AL+LF
Sbjct: 362 TLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFN 421
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
+M E V P + ++AC L L++G+ +H ++Q AL+ MY++CG
Sbjct: 422 QMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCG 481
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
++++A + F D V+W MI L +G G EAL +F QM +GI P+ +F+++L
Sbjct: 482 AVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILT 541
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
AC H+GL+ +G Q F M + + P +H+ L+DLL RAG + +A + IK MP E
Sbjct: 542 ACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTP 601
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446
++A+LS C + +LG A+ + K+ + Y+LLSN Y+ G W + A R+ M
Sbjct: 602 AIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLM 661
Query: 447 KELQTRKKPGNSIIDL 462
++ +K+PG S I++
Sbjct: 662 RDRGVKKEPGCSWIEV 677
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 118/429 (27%), Positives = 196/429 (45%), Gaps = 55/429 (12%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSIYNDFSDSGEVLILF 72
D SL+ Y D+ FD +P RD N ++S + S + + +F
Sbjct: 86 DPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVF 145
Query: 73 KQLIF--EGIVADKITLVILFSACARLEKL--HYGKTVHCYATKVGLEYMLNMENALLLM 128
+ L+ + + D + L SA ++ L + +HC K+G +L++ NAL+ +
Sbjct: 146 RSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIAL 205
Query: 129 YAKCKE---MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
Y KC +A ++ DEM + + I++ G++ V AR F+EI + V+W
Sbjct: 206 YMKCDAPGVTRDARKVLDEMPEKDELTWTTIVV-GHVRKGDVHAARSAFEEIDGEFDVVW 264
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH-RFI- 243
+M+ G V++ EA ELF++M+ + + PDE S+LSAC++ +G+ VH +FI
Sbjct: 265 NAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIR 324
Query: 244 LQNNITQDAF--VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT------------- 288
LQ + +A V AL+ +YSK G + A F KDVV+W T
Sbjct: 325 LQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDN 384
Query: 289 ------------------MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
M+ G + GL +AL++F QM + +KP + T+ +AAC
Sbjct: 385 AARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGE 444
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHF----VCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386
G + G QL + VQ E L+ + +R G + A +MP D
Sbjct: 445 LGALKHGKQLHAHL-----VQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDS- 498
Query: 387 ISYKALLSA 395
+S+ A++SA
Sbjct: 499 VSWNAMISA 507
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 123/310 (39%), Gaps = 76/310 (24%)
Query: 2 GKGLHAHVTKTALD----SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS 57
GK +H + D + + V N+L+ Y + A +FD M +DV SWNT++S
Sbjct: 315 GKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILS 374
Query: 58 IY----------------------------NDFSDSG---EVLILFKQLIFEGIVADKIT 86
Y + + G + L LF Q+ E + T
Sbjct: 375 GYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYT 434
Query: 87 LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146
+AC L L +GK +H + + G E + NALL MYA+C + +
Sbjct: 435 YAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKD--------- 485
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
AR VF + + D V W +M+ + EALELF
Sbjct: 486 -----------------------ARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFD 522
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLS----NLQYGRLVHR-FILQNNITQDAFVKTALIDM 261
+M+ +G+ PD +++L+AC+ QY + R F + +D + + LID+
Sbjct: 523 QMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPG--EDHYAR--LIDL 578
Query: 262 YSKCGSLEEA 271
+ G + EA
Sbjct: 579 LGRAGRIGEA 588
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 15/158 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LHAH+ + ++ GN+L+ Y R DAR++F MP D SWN ++S
Sbjct: 451 GKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQ 510
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF Q++ +GI D+I+ + + +AC H G +Y +M
Sbjct: 511 HGHGREALELFDQMVAQGIYPDRISFLTILTACN-----------HAGLVDDGFQYFESM 559
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
E + + D RL D +G I LI
Sbjct: 560 ERDFGISPGE----DHYARLIDLLGRAGRIGEARDLIK 593
>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 651
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 152/449 (33%), Positives = 227/449 (50%), Gaps = 34/449 (7%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKM--PFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
D+ V N+LI Y + A LFD++ R V SWN++++ Y +F + + +K
Sbjct: 188 DVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKG 247
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
++ G D T++ L S+C + + L +G VH + K+G + + + N L+ MY+KC +
Sbjct: 248 MLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGD 307
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
V AR +F+ + DK V W M+ +
Sbjct: 308 --------------------------------VHSARFLFNGMSDKTCVSWTVMISAYAE 335
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
EA+ LF M G PD +++++S C L+ G+ + + + N + + V
Sbjct: 336 KGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNGLKDNVVV 395
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
ALIDMY+KCG +A FY + VV+WTTMI A G +AL +F+ M G+
Sbjct: 396 CNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFFMMLEMGM 455
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
KPN TF++VL AC H GL+ G + F M Y + P I+H+ C+VDLL R G L +A
Sbjct: 456 KPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREAL 515
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
E IK MP E + ALLSAC + + ++GK V+ + +L Q YV ++N YA
Sbjct: 516 EIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVSEQLFELEPQVAVPYVEMANIYASAE 575
Query: 435 HWTEVAEARRNMKELQTRKKPGNSIIDLK 463
W VA RRNMK LQ RK PG SII +
Sbjct: 576 MWEGVAAIRRNMKYLQVRKSPGQSIIQVN 604
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 190/400 (47%), Gaps = 48/400 (12%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HAHV K+ S+I+V + + Y + DA +F +MP RD+ SWN ++ F+
Sbjct: 75 IHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLL---GFAQ 131
Query: 65 SG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
SG + L + + GI D +T+++L + R++ L V+ + ++G+ +++
Sbjct: 132 SGFLDRLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSV 191
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSR-RNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
N L+ Y+KC + A LFDE+ S R++VS N +I Y + E
Sbjct: 192 ANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFE--------------- 236
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ +A+ +K M+D G +PD ++++LS+C L +G LVH
Sbjct: 237 ----------------KHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVH 280
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ D V LI MYSKCG + A F K V+WT MI A G +
Sbjct: 281 SHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMS 340
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH--FV 358
EA+ +F ME G KP+ T +++++ C +G + G + Y + ++ V
Sbjct: 341 EAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELG-----KWIDNYSINNGLKDNVVV 395
Query: 359 C--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
C L+D+ ++ G A+E M A +S+ +++AC
Sbjct: 396 CNALIDMYAKCGGFNDAKELFYTM-ANRTVVSWTTMITAC 434
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 140/333 (42%), Gaps = 65/333 (19%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H+H K DSD+ V N+LI Y + AR LF+ M + SW ++S Y +
Sbjct: 279 VHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGY 338
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E + LF + G D +T++ L S C + L GK + Y+ GL+ + + NA
Sbjct: 339 MSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNGLKDNVVVCNA 398
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MYAKC ++A +E+F + ++ +V
Sbjct: 399 LIDMYAKCGGFNDA--------------------------------KELFYTMANRTVVS 426
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ C ++ALELF M++ G+ P+ ++VL AC+ +G LV R +
Sbjct: 427 WTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACA------HGGLVERGLE 480
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
N+ + ID YS M++ L G EAL
Sbjct: 481 CFNMMTQKYGINPGIDHYS------------------------CMVDLLGRKGHLREALE 516
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
+ M +P+ + ++L+AC+ G + G
Sbjct: 517 IIKSMP---FEPDSGIWSALLSACKLHGKMEMG 546
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 160/400 (40%), Gaps = 67/400 (16%)
Query: 46 FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT 105
F + +WN+ + + LILF+Q+ GI + T + ACA+L L +
Sbjct: 15 FSTLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQI 74
Query: 106 VHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME 165
+H + K + + ++ A + MY KC +++A +F EM R
Sbjct: 75 IHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVR----------------- 117
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS 225
DI W +M+ G ++ + L + M G+ PD ++ ++
Sbjct: 118 ---------------DIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAVTVLLLID 162
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF--YKTDCKDV 283
+ + +L V+ F ++ + D V LI YSKCG+L A F + + V
Sbjct: 163 SILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSV 222
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR-----------HSG 332
V+W +MI AN+ +A+ + M G P+ +T +++L++C HS
Sbjct: 223 VSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSH 282
Query: 333 LITEGCQ-----------LFRRMGGVYRVQ--------PTIEHFVCLVDLLSRAGLLYQA 373
+ GC ++ + G V+ + T + ++ + G + +A
Sbjct: 283 GVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEA 342
Query: 374 EEFIKIMPA---EDKFISYKALLSACITYSEFDLGKKVAN 410
M A + ++ AL+S C +LGK + N
Sbjct: 343 MTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDN 382
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK + + L ++ V N+LI Y + F DA+ LF M R V SW T+++
Sbjct: 376 LGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACA 435
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCY---ATKVGLEY 117
D + L LF ++ G+ + IT + + ACA + G + C+ K G+
Sbjct: 436 LNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERG--LECFNMMTQKYGINP 493
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEM 145
++ + ++ + + + EAL + M
Sbjct: 494 GIDHYSCMVDLLGRKGHLREALEIIKSM 521
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/434 (33%), Positives = 233/434 (53%), Gaps = 33/434 (7%)
Query: 32 ALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL-IFEGIVADKITLVIL 90
A + A +F+++ ++ +WNT++ + + + + LF Q+ I+ D T L
Sbjct: 83 APMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFL 142
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
F A A+L + G+ +H + G + + ++N+L+ MY+ + A ++F+ M R
Sbjct: 143 FKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYR-- 200
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
D V W S+++G P EAL L+++M
Sbjct: 201 ------------------------------DRVAWNSVINGFALNGMPNEALTLYREMGS 230
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
EGV PD MVS+LSAC L L G VH ++++ + Q+ AL+D+YSKCG+ +
Sbjct: 231 EGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRD 290
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
A F + + + VV+WT++I GLA GLGNEAL++F ++ER+G+KP+E TFV VL AC H
Sbjct: 291 AQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSH 350
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
G++ EG FRRM Y + P IEH C+VDLL RAG + A ++I+ MP + ++
Sbjct: 351 CGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWR 410
Query: 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450
LL AC + +LG+ + +L + +VLLSN YA E W +V R+ M
Sbjct: 411 TLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKG 470
Query: 451 TRKKPGNSIIDLKH 464
+K PG S+++LK+
Sbjct: 471 VKKTPGYSLVELKN 484
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 142/320 (44%), Gaps = 43/320 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+G+H+ V + DS +V NSL+H Y + A +F+ M +RD +WN S+ N
Sbjct: 154 LGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWN---SVIN 210
Query: 61 DFSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
F+ +G E L L++++ EG+ D T+V L SAC L L G+ VH Y KVGL
Sbjct: 211 GFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQ 270
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ NALL +Y+KC +A ++FDEM R
Sbjct: 271 NQHASNALLDLYSKCGNFRDAQKVFDEMEER----------------------------- 301
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG- 236
+V W S++ G EAL+LF ++ +G+ P E V VL ACS L G
Sbjct: 302 ---SVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGF 358
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-KDVVTWTTMIEGLAN 295
R + I ++D+ + G + +A + V W T++
Sbjct: 359 NYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTI 418
Query: 296 YG---LGNEALRVFYQMERK 312
+G LG A ++E++
Sbjct: 419 HGHLELGEVARAEIQRLEQR 438
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 129/270 (47%), Gaps = 11/270 (4%)
Query: 132 CKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL------AREVFDEIVDKDIVLW 185
C L+ R + N N ++ LV L A ++F++I +I W
Sbjct: 44 CGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTW 103
Query: 186 RSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
+M+ G +++ P A+ELF +M + PD + A + L ++ G +H ++
Sbjct: 104 NTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVV 163
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+N FV+ +L+ MYS GSL A F +D V W ++I G A G+ NEAL
Sbjct: 164 RNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALT 223
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV-CLVDL 363
++ +M +G++P+ T VS+L+AC G + G ++ M V VQ +H L+DL
Sbjct: 224 LYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQN--QHASNALLDL 281
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
S+ G A++ M E +S+ +L+
Sbjct: 282 YSKCGNFRDAQKVFDEM-EERSVVSWTSLI 310
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/457 (33%), Positives = 246/457 (53%), Gaps = 32/457 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H HV K LDSD++V N+LI+ Y + DA+++FD+M RD+ SWN++++ Y +D
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND 303
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYMLNMEN 123
L FK + GI D +T+V L S ++L +++ + + L+ + + N
Sbjct: 304 PSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGN 363
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ MYAK M+ A +FD++ R++ +S N L+ GY L A + ++
Sbjct: 364 ALVNMYAKLGYMNCAHTVFDQL-PRKDTISWNTLVTGYTQNGLASEAIDAYN-------- 414
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
MM C P++ VS++ A S + LQ G +H +
Sbjct: 415 ----MMEEC------------------RDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKL 452
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++N++ D FV T LID+Y KCG LE+A+ FY+ V W +I L +G G EAL
Sbjct: 453 IKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEAL 512
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
++F M + +K + TFVS+L+AC HSGL+ EG + F M Y ++P+++H+ C+VDL
Sbjct: 513 QLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDL 572
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L RAG L +A E ++ MP + + ALLSAC Y +LG ++ ++++ +++ Y
Sbjct: 573 LGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYY 632
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
VLLSN YA W V + R ++ RK PG S +
Sbjct: 633 VLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSV 669
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 193/398 (48%), Gaps = 40/398 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H V K + D++V SL+H Y R + A +F MP +DVGSWN ++S +
Sbjct: 140 GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQ 199
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
++ L + ++ EG+ D IT+ + CA+ + + G +H + K GL+ + +
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFV 259
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY+K + +A +FD+M R D
Sbjct: 260 SNALINMYSKFGRLQDAQMVFDQMEVR--------------------------------D 287
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W S++ + P AL FK M G+ PD +VS+ S S LS+ + R +
Sbjct: 288 LVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILG 347
Query: 242 FILQNN-ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
F+++ + +D + AL++MY+K G + A F + KD ++W T++ G GL +
Sbjct: 348 FVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLAS 407
Query: 301 EALRVFYQMER-KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV- 358
EA+ + ME + PN+ T+VS++ A H G + +G ++ ++ + ++ FV
Sbjct: 408 EAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKL---IKNSLYLDVFVA 464
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
CL+DL + G L A +P D + + A++++
Sbjct: 465 TCLIDLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIAS 501
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 115/472 (24%), Positives = 202/472 (42%), Gaps = 83/472 (17%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K LHA + +I + LI+ Y + +R FD + +++ SWN+++S Y F
Sbjct: 39 KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98
Query: 63 SDSGEVLILFKQLIF----EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
E + QL + D T + AC L GK VHC K+G E
Sbjct: 99 GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDD 155
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + +L+ +Y++ ++D+A +VF ++
Sbjct: 156 VFVAASLVHLYSR--------------------------------YGVLDVAHKVFVDMP 183
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
KD+ W +M+ G + AL + +M EGV D + S+L C+ ++ G L
Sbjct: 184 VKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVL 243
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H +L++ + D FV ALI+MYSK G L++A + F + + +D+V+W ++I
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND 303
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
+ ALR F M+ GI+P+ T VS+ + +F ++ R+ +I FV
Sbjct: 304 PSTALRFFKGMQLGGIRPDLLTVVSLTS-------------IFSQLSD-QRISRSILGFV 349
Query: 359 --------------CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDL 404
LV++ ++ G + A +P +D IS+ L++ Y++ L
Sbjct: 350 IRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDT-ISWNTLVTG---YTQNGL 405
Query: 405 GKKV--ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK 454
+ A NMM+ E + N +G W + A ++ LQ K
Sbjct: 406 ASEAIDAYNMME------ECRDTIPN----QGTWVSIIPAYSHVGALQQGMK 447
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HA + K +L D++V LI YG+ DA LF ++P WN +++
Sbjct: 445 GMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGI 504
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
E L LFK ++ E + AD IT V L SAC+
Sbjct: 505 HGRGEEALQLFKDMLAERVKADHITFVSLLSACS 538
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+S N+ + +H +L +Q+ + T LI++Y G + + TF K++ +W
Sbjct: 30 NSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWN 89
Query: 288 TMIEGLANYGLGNEAL----RVFYQMERKGIKPNEATFVSVLAACRHSGLITEG----CQ 339
++I +G +EA+ ++F ++P+ TF +L AC + +G C
Sbjct: 90 SIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS---LVDGKKVHCC 146
Query: 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+F +MG + + LV L SR G+L A + MP +D S+ A++S
Sbjct: 147 VF-KMG----FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKD-VGSWNAMISG 196
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 162/495 (32%), Positives = 250/495 (50%), Gaps = 36/495 (7%)
Query: 3 KGLHAHVTKTALDSDIYV-GNSLIHFYGRM--ALFTDARVLFDKMPFRDVGSWNTLMSIY 59
K +HA + KT L +D V G L+H + AL R LF P D NTL+
Sbjct: 19 KQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALR-LFHHFPNPDTFMHNTLIRSL 77
Query: 60 NDFSDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ L F QL + ++ D T A A L G +H A + G +
Sbjct: 78 SLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAH 137
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSR------------------------------ 148
+ + L+ MYA+C + A R+FDEM
Sbjct: 138 IFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPV 197
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
RN+ S N ++ GY + LAR VF E+ +D V W +M+ G +EA F+++
Sbjct: 198 RNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFREL 257
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+ E + +E + VLSAC+ ++G+++H F+ + V ALID YSKCG++
Sbjct: 258 LREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNV 317
Query: 269 EEALVTFYKTD-CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
A + F + +V+WT++I GLA +G G EA+++F++ME G++P+ TF+S+L A
Sbjct: 318 AMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYA 377
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C HSGL+ EGC LF +M +Y ++P IEH+ C+VDL RA L +A EFI MP I
Sbjct: 378 CSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAI 437
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
++ LL AC + ++ + V + ++ + +VLLSN YA+ G W +V+ RR M
Sbjct: 438 IWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMT 497
Query: 448 ELQTRKKPGNSIIDL 462
E +K PG S+I++
Sbjct: 498 EHSMKKTPGWSMIEI 512
>gi|413938252|gb|AFW72803.1| hypothetical protein ZEAMMB73_565260 [Zea mays]
Length = 709
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 156/508 (30%), Positives = 265/508 (52%), Gaps = 48/508 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--I 58
+ + +H ++ D +V SL++ Y ++ AR L +P RDV SW ++S +
Sbjct: 156 LARMVHGYLVAGGFCDDPFVLGSLVNMYAKVGDVASARRLLLGLPCRDVVSWTAIVSGCV 215
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
N + E L +F ++ +G++ + +T++ + ACA + VH + LE+
Sbjct: 216 LNAMLE--EALGVFLMMLEDGVLPNNVTMLSVIQACALMGASELFGPVHALVVLLELEHD 273
Query: 119 LNMENALLLMYAKCKEMDEALRLFD----------------------------------- 143
++ N+L++MYAK ++EA+RLF
Sbjct: 274 ASVVNSLIMMYAKNGFVEEAIRLFKGFYLKTGSVCSNEDVLAAVLYGCTISGSVKNGEGL 333
Query: 144 -----EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP 198
+MG+ +I N L+ Y E +D A VF+ + KDIV W +++ K +
Sbjct: 334 HAHTIKMGAFPSISVENSLMGMYARFEQIDAALLVFEGMEVKDIVSWNTIISCLAKTDRV 393
Query: 199 EEALELFKKM---IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK 255
EA+++F + G+ PD ++S+L ACS+ L G+++H +++++ D +
Sbjct: 394 NEAMDIFSVLHAAAGGGLAPDFVTVLSMLQACSNAGLLHQGQMLHGYVMKSGFVYDVSIC 453
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
ALI MY+K G ++ A + F + D KD+V+W +MI +G G+ ALRVF+Q++ G
Sbjct: 454 NALISMYAKLGRIDFAEMIFERMDIKDLVSWNSMINAYGMHGDGHSALRVFHQLKDAGTP 513
Query: 316 -PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
PN TFVSV++AC HSGL++EG + F MG + ++P+++H+ C+VDLL R+G +AE
Sbjct: 514 APNAITFVSVISACSHSGLVSEGHKCFESMGRDHGIEPSMDHYACVVDLLGRSGRFAEAE 573
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
+FI+ MP + LL+AC + DL +K A + L +S V LSN YA G
Sbjct: 574 QFIRDMPVRPDSTIWGPLLAACQLHGNVDLAEKAAKELSALEPESDIWRVSLSNTYASVG 633
Query: 435 HWTEVAEARRNMKELQTRKKPGNSIIDL 462
W + A+ R M+ + RK+ G S +D+
Sbjct: 634 RWRDAAKIRSEMRRVGLRKETGWSFVDV 661
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 113/491 (23%), Positives = 214/491 (43%), Gaps = 77/491 (15%)
Query: 3 KGLHAHVTKTAL----DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
LHA + K+ + + NSL+H Y + L + A L D+MP RD ++ L+S
Sbjct: 43 SALHAALLKSGALRSRQAPLAAANSLLHAYLQCGLLSRALRLLDEMPRRDAATYAPLISA 102
Query: 59 YNDFSDSGEVLILFKQLIFEG----------IVADKITLVILFSAC--ARLEKLHYGKTV 106
+ + L F ++ G + ++ T + AC AR E+L + V
Sbjct: 103 HCRLGAPLDALRAFLDMLAWGCSDEEGVDDVVRPNEFTAAAVVQACGLARDERL--ARMV 160
Query: 107 HCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMEL 166
H Y G + +L+ MYAK ++ A RL + R ++VS +++G + +
Sbjct: 161 HGYLVAGGFCDDPFVLGSLVNMYAKVGDVASARRLLLGLPCR-DVVSWTAIVSGCVLNAM 219
Query: 167 VDLAREVF-----DEIVDKDIVLWRSMMHGCV---------------------------- 193
++ A VF D ++ ++ + S++ C
Sbjct: 220 LEEALGVFLMMLEDGVLPNNVTML-SVIQACALMGASELFGPVHALVVLLELEHDASVVN 278
Query: 194 -------KAKQPEEALELFKK--MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
K EEA+ LFK + V +E+V+ +VL C+ +++ G +H +
Sbjct: 279 SLIMMYAKNGFVEEAIRLFKGFYLKTGSVCSNEDVLAAVLYGCTISGSVKNGEGLHAHTI 338
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ V+ +L+ MY++ ++ AL+ F + KD+V+W T+I LA NEA+
Sbjct: 339 KMGAFPSISVENSLMGMYARFEQIDAALLVFEGMEVKDIVSWNTIISCLAKTDRVNEAMD 398
Query: 305 VF---YQMERKGIKPNEATFVSVLAACRHSGLITEGCQL---FRRMGGVYRVQPTIEHFV 358
+F + G+ P+ T +S+L AC ++GL+ +G L + G VY V +
Sbjct: 399 IFSVLHAAAGGGLAPDFVTVLSMLQACSNAGLLHQGQMLHGYVMKSGFVYDVS------I 452
Query: 359 C--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
C L+ + ++ G + AE + M +D +S+ ++++A + + +V + + G
Sbjct: 453 CNALISMYAKLGRIDFAEMIFERMDIKD-LVSWNSMINAYGMHGDGHSALRVFHQLKDAG 511
Query: 417 NQSHEAYVLLS 427
+ A +S
Sbjct: 512 TPAPNAITFVS 522
>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 767
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/474 (32%), Positives = 248/474 (52%), Gaps = 41/474 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSIY 59
G +H V K ++GNS++H Y A +F+ +P RDV SWN+L+S +
Sbjct: 184 GSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGF 243
Query: 60 NDFSDSGEVLILFKQLIFEGIVA---DKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
++ L F+ ++ EG A +++T++ L +CA L + VH E
Sbjct: 244 TLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVH--------E 295
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
Y+ + ++LL+ +++V L L++ + + LARE+FD
Sbjct: 296 YISSRHSSLLVA--------------------KDVVVLTALLDMHARCGNLALAREIFDG 335
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG------VTPDEEVMVSVLSACSSL 230
+ K++V W +M+ G + PEEAL LF++M+ EG V P+ +VSV++ACS L
Sbjct: 336 VEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRL 395
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD--CKDVVTWTT 288
+ ++H++ + + QDA + +ALIDM +KCG +E F + D + VV+W++
Sbjct: 396 GASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSS 455
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
MI +G G AL +F +M G +PNE T++SVL+AC H+GL+ +G F M Y
Sbjct: 456 MIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDY 515
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
+ PT +H+ CLVDLL RAG L +A I MP + + +LL+AC + LG+ V
Sbjct: 516 GMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIV 575
Query: 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ L + S +VLL+N Y G W +V R ++ RK PG S I++
Sbjct: 576 EKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEI 629
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 113/422 (26%), Positives = 195/422 (46%), Gaps = 67/422 (15%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIYNDF 62
+HA++T+ L +D + +L+ YG+ A +FD+MP DV SW L+S Y+
Sbjct: 74 VHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSN 133
Query: 63 SDSGEVLILFKQLIF-------EGIVADKITLVILFSACA---RLEKLHYGKTVHCYATK 112
E F ++ + E D ++L L SACA L G VH K
Sbjct: 134 GCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVK 193
Query: 113 VGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG-SRRNIVSLNILINGYIDMELVDLAR 171
G ++ N+++ MY+ CK++ A R+F+ + +R++VS N LI+G+
Sbjct: 194 YGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFT--------- 244
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG---VTPDEEVMVSVLSACS 228
++G + E AL F+ M+ EG V P+ ++++L +C+
Sbjct: 245 -----------------LNG-----EAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCA 282
Query: 229 SLSNLQYGRLVHRFILQNN----ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
L ++ VH +I + + +D V TAL+DM+++CG+L A F + K+VV
Sbjct: 283 ELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVV 342
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKG------IKPNEATFVSVLAACRHSGLITEGC 338
W+ MI G EALR+F QM +G +KPN T VSV+AAC G
Sbjct: 343 CWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSAS 402
Query: 339 QLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEE-FIKIMPAEDKFISYKALL 393
+ + Y V ++ L+D+ ++ G + + F ++ + +S+ +++
Sbjct: 403 MIHK-----YAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMI 457
Query: 394 SA 395
A
Sbjct: 458 GA 459
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 149/365 (40%), Gaps = 38/365 (10%)
Query: 43 KMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHY 102
+ +D WN+L++ N + L F ++ + ++ T L ACA L +L
Sbjct: 12 SISHKDTFHWNSLIA-KNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70
Query: 103 GKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR-NIVSLNILINGY 161
VH Y T++GL AL+ Y KC A ++FDEM ++VS LI+ Y
Sbjct: 71 TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130
Query: 162 IDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMV 221
VD A + F + W G E D +
Sbjct: 131 SSNGCVDEAFKAFGRM------RWMRGWDG------------------SECCGVDVVSLG 166
Query: 222 SVLSACS---SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF--Y 276
+++SAC+ + L+ G VH +++ + +++ MYS C + A F
Sbjct: 167 ALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGI 226
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG---IKPNEATFVSVLAACRHSGL 333
+ +DVV+W ++I G G ALR F M +G ++PN T +++L +C G
Sbjct: 227 PIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGC 286
Query: 334 ITEGCQLFRRMGGVYR---VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+ + + + V + L+D+ +R G L A E + ++ + +
Sbjct: 287 VETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKN-VVCWS 345
Query: 391 ALLSA 395
A+++
Sbjct: 346 AMIAG 350
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/449 (33%), Positives = 241/449 (53%), Gaps = 40/449 (8%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ DI+ N ++ Y A AR+ FD+MP +D SWNT++S FS +G ++ ++
Sbjct: 65 EPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMIS---GFSQNG-MMDQARE 120
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
L V + ++ NA++ Y + +
Sbjct: 121 LFLVMPVRNSVSW-----------------------------------NAMISGYVESGD 145
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+D A +LF E+ R++V+ +I G++ ++LA + F+E+ K++V W +M+ G ++
Sbjct: 146 LDLAKQLF-EVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIE 204
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
Q E L+LFK+M++ G P+ + SVL CS+LS L+ G+ VH+ I ++ ++ +
Sbjct: 205 NCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITA 264
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
T+L+ MY KCG LE+A F KDVVTW MI G A +G G +AL +F +M +G+
Sbjct: 265 GTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGM 324
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
KP+ TFV+VL+AC H+G + G + F M Y V+ +H+ C+VDLL R G L +A
Sbjct: 325 KPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAV 384
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
+ IK MP + + LL AC + +L + A N++ L +S YV L+N YA
Sbjct: 385 DLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMN 444
Query: 435 HWTEVAEARRNMKELQTRKKPGNSIIDLK 463
W VA RR+MK+ + K PG S I++K
Sbjct: 445 RWDHVAMVRRSMKDNKVIKTPGYSWIEVK 473
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K+ + +I G SL+ Y + DA LF MP +DV +WN ++S Y
Sbjct: 245 LGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYA 304
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L LF ++ EG+ D IT V + SAC H +G+EY +
Sbjct: 305 QHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACN-----------HAGFVDLGIEYFNS 353
Query: 121 M 121
M
Sbjct: 354 M 354
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/315 (22%), Positives = 123/315 (39%), Gaps = 64/315 (20%)
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK-------AKQ----- 197
N++S N +I +I ++ A VF+ + K V W SM+ G A+Q
Sbjct: 4 NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63
Query: 198 PE-------------------EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
PE E+ LF + T M+S S + + L
Sbjct: 64 PEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFL 123
Query: 239 VHRFILQNNITQDAFVK--------------------------TALIDMYSKCGSLEEAL 272
V ++N+++ +A + TA+I + K G +E A
Sbjct: 124 V--MPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAE 181
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F + K++VTW MI G L++F +M G +PN ++ SVL C +
Sbjct: 182 KYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLS 241
Query: 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392
+ G Q+ + + V I L+ + + G L A + +MP +D +++ A+
Sbjct: 242 ALKLGKQVHQLICKS-PVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKD-VVTWNAM 299
Query: 393 LSACITYSEFDLGKK 407
+S Y++ G+K
Sbjct: 300 ISG---YAQHGAGEK 311
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/463 (32%), Positives = 249/463 (53%), Gaps = 32/463 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H ++ + + D ++ ++L+ Y + AR L+D DV +T++S Y
Sbjct: 362 GKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVL 421
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S + L +F+ L+ + I + +T+ + ACA + L G+ +H Y + E +
Sbjct: 422 NGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYV 481
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
E+AL+ MYAKC +D L+ +F ++ KD
Sbjct: 482 ESALMDMYAKCGRLD--------------------------------LSHYIFSKMSLKD 509
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W SM+ + +P+EAL+LF++M EG+ + + S LSAC+SL + YG+ +H
Sbjct: 510 EVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHG 569
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I++ I D F ++ALIDMY+KCG++E AL F K+ V+W ++I +GL E
Sbjct: 570 VIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKE 629
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
++ ++M+ +G KP+ TF+++++AC H+GL+ EG QLF+ M Y + P +EHF C+V
Sbjct: 630 SVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMV 689
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL SR+G L +A +FI MP + + ALL AC + +L + + KL +
Sbjct: 690 DLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPGNSG 749
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVL+SN A+ G W V++ RR MK+ + K PG S +D+ +
Sbjct: 750 YYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNN 792
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 141/467 (30%), Positives = 220/467 (47%), Gaps = 77/467 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H T L SD+YVG++LI Y L DAR FD MP+RD WN +M Y
Sbjct: 159 LGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYI 218
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D G + LF+ + G + TL S CA L G +H A K GLE +
Sbjct: 219 KAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVA 278
Query: 121 MENALLLMYAKCK-------------------------------EMDEALRLFDEM---G 146
+ N LL MYAKC+ +DEAL LF +M G
Sbjct: 279 VANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSG 338
Query: 147 SRRNIVSLNILINGYIDME--------------------------LVDL---------AR 171
+R + V+L L+ D+ LVD+ AR
Sbjct: 339 ARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTAR 398
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
++D D+V+ +++ G V E+AL++F+ ++++ + P+ + SVL AC+S+S
Sbjct: 399 NLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASIS 458
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L G+ +H ++L+N +V++AL+DMY+KCG L+ + F K KD VTW +MI
Sbjct: 459 ALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMIS 518
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY--- 348
+ G EAL +F QM +GIK N T S L+AC I G + + GV
Sbjct: 519 SFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYG----KEIHGVIIKG 574
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
++ I L+D+ ++ G + A + MP +++ +S+ +++SA
Sbjct: 575 PIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNE-VSWNSIISA 620
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 137/273 (50%), Gaps = 33/273 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H +V + A + YV ++L+ Y + + +F KM +D +WN+++S ++
Sbjct: 462 LGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFS 521
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L LF+Q+ EGI + +T+ SACA L ++YGK +H K ++ +
Sbjct: 522 QNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIF 581
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
E+AL+ MYAKC M+ ALR+F+ M +N VS N +I+ Y
Sbjct: 582 AESALIDMYAKCGNMELALRVFEFM-PDKNEVSWNSIISAY------------------- 621
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
HG VK E++ +M +EG PD ++++SAC+ ++ G +
Sbjct: 622 -------GAHGLVK-----ESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLF 669
Query: 241 RFILQNNITQDAFVKTA-LIDMYSKCGSLEEAL 272
+ + + + A ++D+YS+ G L++A+
Sbjct: 670 QCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAI 702
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 133/302 (44%), Gaps = 43/302 (14%)
Query: 34 FTDARVLFDKMPFRDVGS---WNTLMSIYNDFSDSG--EVLILFKQLIFEGIVA---DKI 85
F DA +F +P GS WN L+ F+ +G + +LF ++ A D
Sbjct: 86 FRDAVAVFSALPRAAAGSSLPWNWLI---RGFTAAGHHSLAVLFYVKMWTHPAAPSPDAH 142
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
TL + +CA L + G+ VH A GL + + +AL+ MY+ + +A FD M
Sbjct: 143 TLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGM 202
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
R D VLW MM G +KA A+ LF
Sbjct: 203 PWR--------------------------------DCVLWNVMMDGYIKAGDVGGAVRLF 230
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+ M G P+ + LS C++ ++L G +H ++ + Q+ V L+ MY+KC
Sbjct: 231 RNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKC 290
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
L++A F D+VTW MI G GL +EAL +F M R G +P+ T VS+L
Sbjct: 291 RCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLL 350
Query: 326 AA 327
A
Sbjct: 351 PA 352
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 113/254 (44%), Gaps = 13/254 (5%)
Query: 185 WRSMMHGCVKAKQPEEALELFKKMI--DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
W ++ G A A+ + KM +PD + V+ +C++L + GRLVHR
Sbjct: 107 WNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRT 166
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+ D +V +ALI MYS G L +A F +D V W M++G G A
Sbjct: 167 ARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGA 226
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
+R+F M G +PN AT L+ C + G QL V+ +E V + +
Sbjct: 227 VRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHS-----LAVKCGLEQEVAVAN 281
Query: 363 LL----SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
L ++ L A +++P +D +++ ++S C+ D + +M++ G +
Sbjct: 282 TLLSMYAKCRCLDDAWRLFELLPRDD-LVTWNGMISGCVQNGLLDEALGLFCDMLRSGAR 340
Query: 419 SHEAYVLLSNFYAL 432
++ L+S AL
Sbjct: 341 P-DSVTLVSLLPAL 353
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/457 (33%), Positives = 246/457 (53%), Gaps = 32/457 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H HV K LDSD++V N+LI+ Y + DA+++FD+M RD+ SWN++++ Y +D
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND 303
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYMLNMEN 123
L FK + GI D +T+V L S ++L +++ + + L+ + + N
Sbjct: 304 PSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGN 363
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ MYAK M+ A +FD++ R++ +S N L+ GY L A + ++
Sbjct: 364 ALVNMYAKLGYMNCAHTVFDQL-PRKDTISWNTLVTGYTQNGLASEAIDAYN-------- 414
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
MM C P++ VS++ A S + LQ G +H +
Sbjct: 415 ----MMEEC------------------RDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKL 452
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++N++ D FV T LID+Y KCG LE+A+ FY+ V W +I L +G G EAL
Sbjct: 453 IKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEAL 512
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
++F M + +K + TFVS+L+AC HSGL+ EG + F M Y ++P+++H+ C+VDL
Sbjct: 513 QLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDL 572
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L RAG L +A E ++ MP + + ALLSAC Y +LG ++ ++++ +++ Y
Sbjct: 573 LGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYY 632
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
VLLSN YA W V + R ++ RK PG S +
Sbjct: 633 VLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSV 669
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 194/400 (48%), Gaps = 44/400 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H V K + D++V SL+H Y R + A +F MP +DVGSWN ++S +
Sbjct: 140 GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQ 199
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
++ L + ++ EG+ D IT+ + CA+ + + G +H + K GL+ + +
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFV 259
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY+K + +A +FD+M R D
Sbjct: 260 SNALINMYSKFGRLQDAQMVFDQMEVR--------------------------------D 287
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W S++ + P AL FK M G+ PD +VS+ S S LS+ + R +
Sbjct: 288 LVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILG 347
Query: 242 FILQNN-ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
F+++ + +D + AL++MY+K G + A F + KD ++W T++ G GL +
Sbjct: 348 FVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLAS 407
Query: 301 EALRVFYQMER-KGIKPNEATFVSVLAACRHSGLITEGCQLFRRM--GGVYRVQPTIEHF 357
EA+ + ME + PN+ T+VS++ A H G + +G ++ ++ +Y ++ F
Sbjct: 408 EAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLY-----LDVF 462
Query: 358 V--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
V CL+DL + G L A +P D + + A++++
Sbjct: 463 VATCLIDLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIAS 501
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 115/472 (24%), Positives = 202/472 (42%), Gaps = 83/472 (17%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K LHA + +I + LI+ Y + +R FD + +++ SWN+++S Y F
Sbjct: 39 KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98
Query: 63 SDSGEVLILFKQLIF----EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
E + QL + D T + AC L GK VHC K+G E
Sbjct: 99 GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDD 155
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ + +L+ +Y++ ++D+A +VF ++
Sbjct: 156 VFVAASLVHLYSR--------------------------------YGVLDVAHKVFVDMP 183
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
KD+ W +M+ G + AL + +M EGV D + S+L C+ ++ G L
Sbjct: 184 VKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVL 243
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H +L++ + D FV ALI+MYSK G L++A + F + + +D+V+W ++I
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND 303
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
+ ALR F M+ GI+P+ T VS+ + +F ++ R+ +I FV
Sbjct: 304 PSTALRFFKGMQLGGIRPDLLTVVSLTS-------------IFSQLSD-QRISRSILGFV 349
Query: 359 --------------CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDL 404
LV++ ++ G + A +P +D IS+ L++ Y++ L
Sbjct: 350 IRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDT-ISWNTLVTG---YTQNGL 405
Query: 405 GKKV--ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK 454
+ A NMM+ E + N +G W + A ++ LQ K
Sbjct: 406 ASEAIDAYNMME------ECRDTIPN----QGTWVSIIPAYSHVGALQQGMK 447
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +HA + K +L D++V LI YG+ DA LF ++P WN +++
Sbjct: 445 GMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGI 504
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
E L LFK ++ E + AD IT V L SAC+
Sbjct: 505 HGRGEEALQLFKDMLAERVKADHITFVSLLSACS 538
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+S N+ + +H +L +Q+ + T LI++Y G + + TF K++ +W
Sbjct: 30 NSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWN 89
Query: 288 TMIEGLANYGLGNEAL----RVFYQMERKGIKPNEATFVSVLAACRHSGLITEG----CQ 339
++I +G +EA+ ++F ++P+ TF +L AC + +G C
Sbjct: 90 SIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS---LVDGKKVHCC 146
Query: 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+F +MG + + LV L SR G+L A + MP +D S+ A++S
Sbjct: 147 VF-KMG----FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKD-VGSWNAMISG 196
>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Brachypodium distachyon]
Length = 618
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 149/475 (31%), Positives = 249/475 (52%), Gaps = 32/475 (6%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
++ +L+ Y R +A LF +MP R+V SWNT++ Y G+ LF +
Sbjct: 97 NVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMP 156
Query: 77 FEGIVADKITLVILFSACARLEKLHYGK---------TVHCYATKVG------------- 114
V D + IL +A R + + V + T V
Sbjct: 157 ----VRDAGSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARA 212
Query: 115 -----LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169
E + NA++ YA+ +DEA LF +M +R +I S NI+I G+I + ++
Sbjct: 213 LFDGMPERNVVSWNAMISGYARNHMIDEAHDLFMKMPTR-DIASWNIMITGFIQNKNLER 271
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A+E+FD++ +++V W +MM+G +++ Q E AL+LF M+ +G+ P++ + + ACS+
Sbjct: 272 AQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSN 331
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
L+ L G+ VH+ I + D F+++ L+++Y+KCG + A F + KDV++W M
Sbjct: 332 LAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGM 391
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I A++G+G EA+ ++ +M+ G KPN+ T+V +L+AC HSGL+ EG ++F M
Sbjct: 392 IAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRS 451
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
+ EH+ CL+DL SRAG L A+ I + E + ALL C ++ +G A
Sbjct: 452 IAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAA 511
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
N+++ + Y LL N YA G W E A+ R M + +K+PG S I++ +
Sbjct: 512 RNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVAN 566
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 141/328 (42%), Gaps = 60/328 (18%)
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ YA + +A LFD +RRN+V+ L++GY VD A +F + ++++V
Sbjct: 71 ALVAAYACQGMLHDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFGRMPERNVV 130
Query: 184 LWRSMMHGCVKAKQPEEALELFKKM--------------------IDEGVT-----PDEE 218
W +M+ + + +A LF M ID+ P+
Sbjct: 131 SWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWNILLAALVRSGNIDKARKLFDRMPERN 190
Query: 219 VM--VSVLSACSSLSNLQYGRLVHRFILQNNI------------------TQDAFVKTAL 258
VM ++++ + ++ R + + + N+ D F+K
Sbjct: 191 VMAWTTMVAGIARSGSVNEARALFDGMPERNVVSWNAMISGYARNHMIDEAHDLFMKMPT 250
Query: 259 IDMYS---------KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
D+ S + +LE A F K ++VVTWTTM+ G AL++F M
Sbjct: 251 RDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGM 310
Query: 310 ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRA 367
GI+PN+ TF+ + AC + ++EG Q+ + + + + F+ L++L ++
Sbjct: 311 LIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQM---ICKTPFQFDTFIESTLMNLYAKC 367
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSA 395
G + A + + +D IS+ +++A
Sbjct: 368 GEIILARKVFNLSKEKD-VISWNGMIAA 394
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 103/270 (38%), Gaps = 66/270 (24%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + KT D ++ ++L++ Y + AR +F+ +DV SWN +++ Y
Sbjct: 338 GQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYAH 397
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + L++++ G + +T V L SAC+ H G
Sbjct: 398 HGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACS-----HSGL----------------- 435
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+DE LR+F+ M R+I + ID+
Sbjct: 436 -------------VDEGLRIFEYMVKDRSIAVRDEHYTCLIDL----------------- 465
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
C +A + +A L + V P V ++L C+S N G L R
Sbjct: 466 ----------CSRAGRLGDAKRLIHFL---KVEPSSTVWNALLGGCNSHGNESIGDLAAR 512
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEA 271
+L+ +A T L ++Y+ G +EA
Sbjct: 513 NLLEAE-PNNAGTYTLLCNIYASAGKWKEA 541
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 12/167 (7%)
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
+N QD + A + + G + +A F +T +DVV+WT ++ A G+ ++A +
Sbjct: 32 SNHVQDPNRRVAEL---AAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARAL 88
Query: 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
F +R + N T+ ++L+ +G + E LF RM + + + +++ +
Sbjct: 89 F---DRPDARRNVVTWTALLSGYARAGRVDEAEALFGRM-----PERNVVSWNTMLEAYT 140
Query: 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
+G + A MP D S+ LL+A + D +K+ + M
Sbjct: 141 SSGRVGDACTLFNGMPVRDAG-SWNILLAALVRSGNIDKARKLFDRM 186
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/428 (33%), Positives = 239/428 (55%), Gaps = 32/428 (7%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR LF+ M D+ +N++ Y+ F++ EV LF +++ +GI+ D T L ACA
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
+ L G+ +HC + K+GL+ N+
Sbjct: 142 AKALEEGRQLHCLSMKLGLD--------------------------------DNVYVCPT 169
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
LIN Y + E VD AR VFD IV+ +V + +M+ G + +P EAL LF++M + + P+
Sbjct: 170 LINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPN 229
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
E ++SVLS+C+ L +L G+ +H++ +++ + V TALIDM++KCGSL++A+ F
Sbjct: 230 EITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFE 289
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
K KD W+ MI AN+G +++ +F +M + ++P+E TF+ +L AC H+G + E
Sbjct: 290 KMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEE 349
Query: 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
G + F +M + + P+I+H+ +VDLLSRAG L A EFI +P + ++ LL+AC
Sbjct: 350 GRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAAC 409
Query: 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPG 456
+++ DL +KV+ + +L + YV+LSN YA W V R+ MK+ + K PG
Sbjct: 410 SSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPG 469
Query: 457 NSIIDLKH 464
S I++ +
Sbjct: 470 CSSIEVNN 477
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 136/271 (50%), Gaps = 7/271 (2%)
Query: 119 LNMENALLLMYAKCKEMDEALRL--FDEMGSRRNIVSLNILINGYIDMEL---VDLAREV 173
+N +N +LL+ +KC + E +++ + ++ + LIN + + AR +
Sbjct: 27 VNTQNPILLI-SKCNSLRELMQIQAYAIKSHIEDVSFVAKLINFCTESPTESSMSYARHL 85
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233
F+ + + DIV++ SM G + P E LF +++++G+ PD S+L AC+ L
Sbjct: 86 FEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKAL 145
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
+ GR +H ++ + + +V LI+MY++C ++ A F + VV + MI G
Sbjct: 146 EEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGY 205
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353
A NEAL +F +M+ K +KPNE T +SVL++C G + G + + +
Sbjct: 206 ARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKYAKKHSFCKY 264
Query: 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
++ L+D+ ++ G L A + M +D
Sbjct: 265 VKVNTALIDMFAKCGSLDDAVSIFEKMRYKD 295
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 132/275 (48%), Gaps = 41/275 (14%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH K LD ++YV +LI+ Y AR +FD++ V +N +++ Y
Sbjct: 148 GRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYAR 207
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L LF+++ + + ++ITL+ + S+CA L L GK +H YA K + +
Sbjct: 208 RNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKV 267
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ M+AKC +D+A+ +F++M KD
Sbjct: 268 NTALIDMFAKCGSLDDAVSIFEKMRY--------------------------------KD 295
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR---- 237
W +M+ + E+++ +F++M E V PDE + +L+ACS ++ GR
Sbjct: 296 TQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFS 355
Query: 238 -LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
+V +F + +I +++D+ S+ G+LE+A
Sbjct: 356 QMVSKFGIVPSIKHYG----SMVDLLSRAGNLEDA 386
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 89/182 (48%), Gaps = 1/182 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K + + V +LI + + DA +F+KM ++D +W+ ++ Y
Sbjct: 248 LGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYA 307
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
+ + + +++F+++ E + D+IT + L +AC+ ++ G K +K G+ +
Sbjct: 308 NHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSI 367
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+++ + ++ +++A D++ + IL+ +DLA +V + I +
Sbjct: 368 KHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFE 427
Query: 180 KD 181
D
Sbjct: 428 LD 429
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 238/462 (51%), Gaps = 33/462 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH K ++ N+L+ Y + A +F KM + SW ++++ Y
Sbjct: 314 LGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYV 373
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + LF ++ +G+ D T+ + ACA L G+ VH Y K G+ L
Sbjct: 374 REGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLP 433
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC ++EA +F ++ ++IVS N +I GY L
Sbjct: 434 VTNALINMYAKCGSVEEARLVFSKI-PVKDIVSWNTMIGGYSQNLL-------------- 478
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
P EALELF M + PD+ M VL AC+ L+ L GR +H
Sbjct: 479 -----------------PNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIH 520
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
IL+ D V AL+DMY+KCG L A + F KD+++WT MI G +G GN
Sbjct: 521 GHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGN 580
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EA+ F +M GI+P+E++F ++L AC HSGL+ EG + F M V+P +EH+ C+
Sbjct: 581 EAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACV 640
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL+R G L +A +FI+ MP + + LLS C + + L +KVA ++ +L +
Sbjct: 641 VDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNT 700
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YV+L+N YA W EV + R+ M++ ++ PG S I++
Sbjct: 701 RYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEV 742
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 133/465 (28%), Positives = 211/465 (45%), Gaps = 76/465 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+ + + D +G L+ Y R +FDK+ V WN LMS Y
Sbjct: 113 GKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAK 172
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + LFK++ G+V + T + A L K+ K VH Y K+G +
Sbjct: 173 IGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAV 232
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI---- 177
N+L+ Y K ++ A LFDE+ S ++VS N +ING + E+F ++
Sbjct: 233 VNSLIAAYFKFGGVESAHNLFDEL-SEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILG 291
Query: 178 VDKDIVLWRSMMHGC----------------VKAKQPEE-------------------AL 202
V+ D+ S++ C VKA EE A
Sbjct: 292 VEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGAT 351
Query: 203 ELFKKMID-------------------------------EGVTPDEEVMVSVLSACSSLS 231
E+F KM D +GV PD + S++ AC+ S
Sbjct: 352 EVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSS 411
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
+L GR VH ++++N + + V ALI+MY+KCGS+EEA + F K KD+V+W TMI
Sbjct: 412 SLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIG 471
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
G + L NEAL +F M+++ KP++ T VL AC + +G ++ + + R
Sbjct: 472 GYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHI--LRRGY 528
Query: 352 PTIEHFVC-LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ H C LVD+ ++ GLL A+ ++P +D IS+ +++
Sbjct: 529 FSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKD-LISWTVMIAG 572
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 134/307 (43%), Gaps = 44/307 (14%)
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
CA + L GK VH G+ + L+ MY C +
Sbjct: 104 CAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGD------------------- 144
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
L+ G R++FD+I++ + LW +M K E++ LFKKM GV
Sbjct: 145 ---LVQG----------RKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGV 191
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
+ VL ++L ++ + VH ++L+ + V +LI Y K G +E A
Sbjct: 192 VGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHN 251
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F + DVV+W +MI G G L +F QM G++ + T VSVL AC + G
Sbjct: 252 LFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGN 311
Query: 334 ITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEE-FIKIMPAEDKFIS 388
++ G R + G + V+ V L+D+ S+ G L A E F+K+ + +S
Sbjct: 312 LSLG----RALHG-FGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKM--GDTTIVS 364
Query: 389 YKALLSA 395
+ ++++A
Sbjct: 365 WTSIIAA 371
>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/461 (32%), Positives = 250/461 (54%), Gaps = 3/461 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS-IYND 61
+G+HA + K L +L+ Y + L DA LFD+ P RD+ +++L++ + +
Sbjct: 105 RGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHS 164
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S + IL L + + D + + S ARL G+ +H + +
Sbjct: 165 ASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVV 224
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+++L+ MY KC D+ ++FD M S +N V L++GY + A ++F + ++
Sbjct: 225 KSSLVDMYCKCGSPDDGRKVFDSM-SAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRN 283
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS-VLSACSSLSNLQYGRLVH 240
+ W +++ G V + A+ELF +M +GV D+ ++S V+ + L+ GR +H
Sbjct: 284 LFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLH 343
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ + V ALIDMYSKC + A F +DV++WTTM+ G A +G
Sbjct: 344 GSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAE 403
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL ++ +M G KPNE TFV ++ AC H+GL+ +G QLF M Y + P ++H+ C
Sbjct: 404 EALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCY 463
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLLSR+G L +AEE + MP E ++ ALLSAC Y + ++ ++++ +++L +
Sbjct: 464 LDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDS 523
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
Y+LLSN YA+ G W VA+ R+ M L+ RK+PG S I+
Sbjct: 524 STYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIE 564
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 137/340 (40%), Gaps = 68/340 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LHAH + + D V +SL+ Y + D R +FD M ++ W L+S Y
Sbjct: 205 LGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYA 264
Query: 61 DFSDSGEVLILFKQL----------IFEGIVA----------------------DKITLV 88
S E L LF+ + + G+V D L
Sbjct: 265 SNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLS 324
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
I+ A L G+ +H ++G + + NAL+ MY+KC
Sbjct: 325 IVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCS--------------- 369
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+I+S AREVF+ I +D++ W +M+ G + + EEAL L+ +M
Sbjct: 370 -DILS----------------AREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRM 412
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGS 267
+ G P+E V ++ ACS +Q GR L + IT T +D+ S+ G
Sbjct: 413 VLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGH 472
Query: 268 LEEA--LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
L EA L+T + D TW ++ Y +R+
Sbjct: 473 LLEAEELMTTMPYE-PDEATWGALLSACTKYKDAEMCIRI 511
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 4/185 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH + S++ VGN+LI Y + + AR +F+ + FRDV SW T++
Sbjct: 338 LGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEA 397
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYML 119
+ E L L+ +++ G +++T V L AC+ + G+ + + G+ L
Sbjct: 398 QHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRL 457
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAREVFDE 176
L + ++ + EA L M + + L++ Y D E+ + E
Sbjct: 458 QHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLE 517
Query: 177 IVDKD 181
+ KD
Sbjct: 518 LRPKD 522
>gi|357116106|ref|XP_003559825.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
mitochondrial-like [Brachypodium distachyon]
Length = 739
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 166/531 (31%), Positives = 265/531 (49%), Gaps = 72/531 (13%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM-SIYND 61
+ LHA +++ L +D++VGN+L+ Y R AL AR +FD+MP RD+ SWN ++ + D
Sbjct: 160 RQLHALASRSGLVADVFVGNALVTAYSRGALLGAARRVFDEMPARDLVSWNAMICGLAQD 219
Query: 62 FSDSGEVLILFKQLIFEGIVA---DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
EV+++F +L+ +G A D+I++ + AC K+ G+ VH + K+G+E
Sbjct: 220 GDCPTEVILVFLRLLKDGGAAVRPDRISVCSVIPACGSEGKIELGRQVHSFTVKLGVEGK 279
Query: 119 LNMENALLLMY-----AKC-----KEMDE-----------------ALRLFDEM------ 145
+++ N L+ MY A C K MDE A+ LF+ M
Sbjct: 280 VSIGNVLVAMYYKSGAAGCARKLLKSMDERDVISWTTAISMDGEEDAIELFNGMRQDGVP 339
Query: 146 --------------------------------GSRRNIVSLNILINGYIDMELVDLAREV 173
G + N LI Y + +D AR V
Sbjct: 340 PNEVTFVALMSALAAGCPARYGQMIHTVCLKTGVSDEAAAANSLITMYAKLRRMDDARTV 399
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS-- 231
FD + +I+ W +++ G + + EAL++F M+ + P+E SVLSA +++
Sbjct: 400 FDRMPRPEIIAWNALISGYAQNELCNEALQVFSCMV-RCLRPNETTFASVLSAVTAVETV 458
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
++ YG + H L+ + +V ALIDMY+K GSLEE+ F T + ++ WT +I
Sbjct: 459 SMAYGEMYHCQSLKLGLKVSEYVSGALIDMYAKRGSLEESRKAFDVTVHRSLIAWTAIIS 518
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
A +G + + +F M G+ P+ +SVL ACRHSG + G ++F M + V+
Sbjct: 519 AHAKHGNYDTVMNLFDDMVCSGVAPDGVVLLSVLTACRHSGAVNTGREIFDSMPAEHHVE 578
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
P EH+ C++D+L RAG L +AEE + MP + ++LL AC + + ++VA
Sbjct: 579 PWPEHYACVIDMLGRAGRLEEAEELMLQMPTGPSVSALQSLLGACRIHGNTSIAERVAGI 638
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ + AYVLLSN YA +G W VA+ RR M+E RK+ G S +D
Sbjct: 639 LTETEPTESGAYVLLSNIYAEKGDWGGVAKVRREMREKGVRKEIGFSWVDF 689
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 152/334 (45%), Gaps = 48/334 (14%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL-FTDARVLFDKMPFRDVGSWNTLMSIYND 61
LH + LD+ +V NSL Y + A F A +F RDV S+NT++S
Sbjct: 57 PALHGLAIASGLDAFSFVTNSLAARYAKSASSFPSAAKVFHTARARDVSSYNTILSA--- 113
Query: 62 FSDSGEVLILFKQLIFEGIV-ADKITLVILFS-ACARLEK--LHYGKTVHCYATKVGLEY 117
D GE L ++ G V D +TL + S A +R E + + +H A++ GL
Sbjct: 114 LPDRGEALAFAAWMLRSGDVRPDAVTLTVALSLAASRGEADGVWIVRQLHALASRSGLVA 173
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + NAL+ Y++ L+ AR VFDE+
Sbjct: 174 DVFVGNALVTAYSRGA--------------------------------LLGAARRVFDEM 201
Query: 178 VDKDIVLWRSMMHGCVK-AKQPEEALELFKKMIDEG---VTPDEEVMVSVLSACSSLSNL 233
+D+V W +M+ G + P E + +F +++ +G V PD + SV+ AC S +
Sbjct: 202 PARDLVSWNAMICGLAQDGDCPTEVILVFLRLLKDGGAAVRPDRISVCSVIPACGSEGKI 261
Query: 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293
+ GR VH F ++ + + L+ MY K G+ A D +DV++WTT I
Sbjct: 262 ELGRQVHSFTVKLGVEGKVSIGNVLVAMYYKSGAAGCARKLLKSMDERDVISWTTAISMD 321
Query: 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
+A+ +F M + G+ PNE TFV++++A
Sbjct: 322 GE----EDAIELFNGMRQDGVPPNEVTFVALMSA 351
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 36/273 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H KT + + NSLI Y ++ DAR +FD+MP ++ +WN L+S Y
Sbjct: 361 GQMIHTVCLKTGVSDEAAAANSLITMYAKLRRMDDARTVFDRMPRPEIIAWNALISGYAQ 420
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE--KLHYGKTVHCYATKVGLEYML 119
E L +F ++ + ++ T + SA +E + YG+ HC + K+GL+
Sbjct: 421 NELCNEALQVFSCMV-RCLRPNETTFASVLSAVTAVETVSMAYGEMYHCQSLKLGLKVSE 479
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ AL+ MYAK ++E +R+ FD V
Sbjct: 480 YVSGALIDMYAKRGSLEE--------------------------------SRKAFDVTVH 507
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-L 238
+ ++ W +++ K + + LF M+ GV PD V++SVL+AC + GR +
Sbjct: 508 RSLIAWTAIISAHAKHGNYDTVMNLFDDMVCSGVAPDGVVLLSVLTACRHSGAVNTGREI 567
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
++++ +IDM + G LEEA
Sbjct: 568 FDSMPAEHHVEPWPEHYACVIDMLGRAGRLEEA 600
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 18/207 (8%)
Query: 200 EALELFKKMIDEG-VTPDEEVMVSVLSACSS---LSNLQYGRLVHRFILQNNITQDAFVK 255
EAL M+ G V PD + LS +S + R +H ++ + D FV
Sbjct: 119 EALAFAAWMLRSGDVRPDAVTLTVALSLAASRGEADGVWIVRQLHALASRSGLVADVFVG 178
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG-LGNEALRVFYQMERKG- 313
AL+ YS+ L A F + +D+V+W MI GLA G E + VF ++ + G
Sbjct: 179 NALVTAYSRGALLGAARRVFDEMPARDLVSWNAMICGLAQDGDCPTEVILVFLRLLKDGG 238
Query: 314 --IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC----LVDLLSRA 367
++P+ + SV+ AC G I G Q+ + V+ +E V LV + ++
Sbjct: 239 AAVRPDRISVCSVIPACGSEGKIELGRQVHS-----FTVKLGVEGKVSIGNVLVAMYYKS 293
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLS 394
G A + +K M D IS+ +S
Sbjct: 294 GAAGCARKLLKSMDERD-VISWTTAIS 319
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 156/487 (32%), Positives = 252/487 (51%), Gaps = 33/487 (6%)
Query: 7 AHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSG 66
A + KT+L+ D + N I A +M +V +N L + S
Sbjct: 49 AAMIKTSLNQDCRLMNQFITACTSFKCLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPI 108
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
L L+ +++ + + T L A + + +G+++ + K G + + ++ L+
Sbjct: 109 RSLELYVRMLRDSVSPSSYTYSSLVKASSFASR--FGESLQAHIWKFGFGFHVKIQTTLI 166
Query: 127 LMYAKCKEMDEALRLFDEMGSR------------------------------RNIVSLNI 156
Y+ + EA ++FDEM R +N + N
Sbjct: 167 DFYSATGGIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNC 226
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
LINGY+ + ++ A +F+++ KDI+ W +M+ G + K+ EA+ +F KM++EG+ PD
Sbjct: 227 LINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPD 286
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
E M +V+SAC+ L L+ G+ VH + LQN D ++ +AL+DMYSKCGSLE AL+ F+
Sbjct: 287 EVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFF 346
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
K++ W ++IEGLA +G EAL++F +ME + +KPN TFVSV AC H+GL+ E
Sbjct: 347 NLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDE 406
Query: 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
G +++R M Y + +EH+ +V L S+AGL+Y+A E I M E + + ALL C
Sbjct: 407 GRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGC 466
Query: 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK-P 455
+ + + N +M L + Y LL + YA + W +VAE R M+EL K P
Sbjct: 467 RIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICP 526
Query: 456 GNSIIDL 462
G S I +
Sbjct: 527 GTSSIRI 533
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 143/355 (40%), Gaps = 96/355 (27%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ L AH+ K + + +LI FY +AR +FD+MP RD +W T++S Y
Sbjct: 143 GESLQAHIWKFGFGFHVKIQTTLIDFYSATGGIREARKVFDEMPERDDIAWTTMVSAYRR 202
Query: 60 -----------NDFSDSGEV----LI--------------LFKQLIFEGIVA-------- 82
N S+ E LI LF Q+ + I++
Sbjct: 203 VLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGY 262
Query: 83 -----------------------DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
D++T+ + SACA L L GK VH Y + G +
Sbjct: 263 SQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDV 322
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ +AL+ MY+KC ++ AL VF +
Sbjct: 323 YIGSALVDMYSKCGSLERALL--------------------------------VFFNLPK 350
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K++ W S++ G +EAL++F KM E V P+ VSV +AC+ + GR +
Sbjct: 351 KNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRI 410
Query: 240 HRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEG 292
+R ++ + +I + ++ ++SK G + EAL + + + V W +++G
Sbjct: 411 YRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDG 465
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + + D+Y+G++L+ Y + A ++F +P +++ WN+++
Sbjct: 305 IGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLA 364
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHC-----YATKVGL 115
+ E L +F ++ E + + +T V +F+AC + G+ ++ Y+ +
Sbjct: 365 AHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNV 424
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
E+ ++ +++K + EAL L M N V L++G
Sbjct: 425 EHY----GGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDG 465
>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/465 (31%), Positives = 235/465 (50%), Gaps = 33/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H + + +++V +L+ Y + AR LF+ M R+V +WN ++S Y+
Sbjct: 140 IAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYS 199
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D S E + LF + +G++ D T++ L A + L G +H + + G E +
Sbjct: 200 DHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKH 259
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++ AL+ +Y + VD A VF E+ K
Sbjct: 260 IKTALMDIY--------------------------------VSHNCVDDAHRVFSEMSVK 287
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+ W M+ G + + A++ F KM+ + + D ++ +LS+CS LQ GR V
Sbjct: 288 DVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRV 347
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ + FV +A+IDMY+ CG+LE+A FY KDVV W MI G G G
Sbjct: 348 HALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYG 407
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+A+ +F QM+ G+ P+E+TFVSVL AC H+G++ EG Q+F M V P ++H+ C
Sbjct: 408 TDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYAC 467
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
++D+L RAG L A FI MP + F Y LL AC + LG +++ + ++
Sbjct: 468 VIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPND 527
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVLLSN YAL G+W V R +++ + +K PG S I++
Sbjct: 528 AGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQ 572
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 193/396 (48%), Gaps = 43/396 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + + L + ++ NSL++ Y L DA+ +F P+++V SW L+S
Sbjct: 43 IHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDC 102
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E + +F+++I + +T+ + A A L + K+VHC+ + G E + +E A
Sbjct: 103 FVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETA 162
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MY+K M A +LF+ M S RN+V+ N +++GY D
Sbjct: 163 LVDMYSKFGCMGVARQLFESM-SERNVVTWNAIVSGYSD--------------------- 200
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
HG EEA++LF M +G+ D ++S++ A S+ LQ G +H FI+
Sbjct: 201 -----HGF-----SEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFII 250
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ D +KTAL+D+Y +++A F + KDV WT M+ G ++ + A++
Sbjct: 251 RTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIK 310
Query: 305 VFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----C 359
F +M + +K + + +L++C HSG + +G RR+ + ++ + +
Sbjct: 311 HFNKMLGIQNLKLDSIALMGILSSCSHSGALQQG----RRVHAL-AIKTCFANNIFVGSA 365
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
++D+ + G L A+ F M E + + A+++
Sbjct: 366 VIDMYANCGNLEDAKRFFYGM-GEKDVVCWNAMIAG 400
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 9/185 (4%)
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
++P + S+L L LQ +H I+ + +T + F+ +L++ Y CG L +A
Sbjct: 20 LSPLAQPHASILRKLKDLKPLQQ---IHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAK 76
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F+ T K+VV+WT +I GLA EA+ VF +M KPN T SVL A + G
Sbjct: 77 QIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLG 136
Query: 333 L--ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
L I + F GG + +E LVD+ S+ G + A + + M +E +++
Sbjct: 137 LIRIAKSVHCFWVRGG-FEGNVFVE--TALVDMYSKFGCMGVARQLFESM-SERNVVTWN 192
Query: 391 ALLSA 395
A++S
Sbjct: 193 AIVSG 197
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 246/462 (53%), Gaps = 43/462 (9%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +H+HV K D YVGN+LI Y + F+DA +F++MP RDV SWN+ M+
Sbjct: 139 RAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAA---M 195
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
GEV +++ E + D ++
Sbjct: 196 VRQGEVEGA-RRMFDEMLEKDTVSW----------------------------------- 219
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N LL Y K +++EA +LF M RN+VS + +++GY +++AR +FD++ K++
Sbjct: 220 NTLLDGYTKAGDVEEAFKLFQCM-PERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNL 278
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W M+ C + EEA +LF +M + V D +VS+L+AC+ +L G+ +HR+
Sbjct: 279 VTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAACAESGSLALGKRIHRY 338
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDVVTWTTMIEGLANYGLGN 300
+ + + V ALIDM+ KCG + A F T+ KD V+W T+I G A +G G+
Sbjct: 339 VRTRQLGRSTHVCNALIDMFCKCGCINRADYVF-DTEIVEKDSVSWNTIIGGFAMHGHGD 397
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL F QM+ +G P+ T ++VL+AC H G + EG + F M Y V P IEH+ C+
Sbjct: 398 KALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCM 457
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
+DLL R GL+ +A + IK MP + + + +LLSAC + + + N + KL +
Sbjct: 458 IDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNA 517
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
Y +LS+ YA G W+++A+AR MK ++K G+S I+L
Sbjct: 518 GNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQKSSGSSWIEL 559
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 31/202 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFD-KMPFRDVGSWNTLMSIY 59
+GK +H +V L +V N+LI + + A +FD ++ +D SWNT++ +
Sbjct: 331 LGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGF 390
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ L F Q+ +G D +T++ + SAC + + G+ Y
Sbjct: 391 AMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGR-----------RYFA 439
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
NME Y +++ + D +G G + E VDL + + D
Sbjct: 440 NMERD----YGVVPQIEHYGCMIDLLG------------RGGLIKEAVDLIKSM---PWD 480
Query: 180 KDIVLWRSMMHGCVKAKQPEEA 201
+ V+W S++ C K E A
Sbjct: 481 PNEVIWGSLLSACRLHKNVEYA 502
>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g15340, mitochondrial; Flags: Precursor
gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 152/472 (32%), Positives = 267/472 (56%), Gaps = 17/472 (3%)
Query: 2 GKGLHAHVTKTALD--SDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMS 57
GK LHA +T + L Y+ N+L FY A+ LFD++P +D W TL+S
Sbjct: 25 GKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLS 84
Query: 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
++ + + LF ++ + + D +++V LF CA+LE L + + H A K+G+
Sbjct: 85 SFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLT 144
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + NAL+ MY KC + E R+F+E+ +++VS ++++ + E ++ REVF E+
Sbjct: 145 SVKVCNALMDMYGKCGLVSEVKRIFEEL-EEKSVVSWTVVLDTVVKWEGLERGREVFHEM 203
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYG 236
+++ V W M+ G + A E LEL +M+ G + + S+LSAC+ NL G
Sbjct: 204 PERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVG 263
Query: 237 RLVHRFILQNNIT-------QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
R VH + L+ + D V TAL+DMY+KCG+++ ++ F ++VVTW +
Sbjct: 264 RWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNAL 323
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
GLA +G G + +F QM R+ +KP++ TF +VL+AC HSG++ EG + F + Y
Sbjct: 324 FSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEGWRCFHSLR-FYG 381
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
++P ++H+ C+VDLL RAGL+ +AE ++ MP + +LL +C + + ++ +++
Sbjct: 382 LEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIK 441
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA-RRNMKELQTRKKPGNSII 460
++++ + E +L+SN Y EG +++A+ R ++++ RK PG S I
Sbjct: 442 RELIQMSPGNTEYQILMSNMYVAEGR-SDIADGLRGSLRKRGIRKIPGLSSI 492
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 117/279 (41%), Gaps = 39/279 (13%)
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLN--MENALLLMYAKCKEMDEALRLFDEMG 146
+L CA L GK +H T GL+ + NAL YA EM A +LFDE+
Sbjct: 11 LLLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEI- 69
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
+ +KD V W +++ + +++LF
Sbjct: 70 -----------------------------PLSEKDNVDWTTLLSSFSRYGLLVNSMKLFV 100
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
+M + V D+ +V + C+ L +L + + H ++ + V AL+DMY KCG
Sbjct: 101 EMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCG 160
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+ E F + + K VV+WT +++ + + VF++M + N + ++A
Sbjct: 161 LVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPER----NAVAWTVMVA 216
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365
+G E +L M V+R + +FV L +LS
Sbjct: 217 GYLGAGFTREVLELLAEM--VFRCGHGL-NFVTLCSMLS 252
>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
Length = 586
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/459 (32%), Positives = 249/459 (54%), Gaps = 3/459 (0%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS-IYNDFS 63
+HA + K L +L+ Y + L DA LFD+ P RD+ +++L++ I + S
Sbjct: 1 MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSAS 60
Query: 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
+ IL L + + D + + S ARL G+ +H + +++
Sbjct: 61 PELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKS 120
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
+L+ MY KC D+ ++FD M S +N V L++GY + A ++F + +++
Sbjct: 121 SLVDMYCKCGSPDDGRKVFDSM-SAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLF 179
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS-VLSACSSLSNLQYGRLVHRF 242
W +++ G V + A+ELF +M +GV D+ ++S V+ A + L+ GR +H
Sbjct: 180 AWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGASADLAAFVLGRQLHGS 239
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
++ + V ALIDMYSKC + A F +DV++WTTM+ G A +G EA
Sbjct: 240 AMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEA 299
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
L ++ +M G KPNE TFV ++ AC H+GL+ +G QLF M Y + P ++H+ C +D
Sbjct: 300 LALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLD 359
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LLSR+G L +AEE + MP E ++ ALLSAC Y + ++ ++++ +++L +
Sbjct: 360 LLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSST 419
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
Y+LLSN YA+ G W VA+ R+ M L+ RK+PG S I+
Sbjct: 420 YILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIE 458
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 139/340 (40%), Gaps = 68/340 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LHAH + + D V +SL+ Y + D R +FD M ++ W L+S Y
Sbjct: 99 LGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYA 158
Query: 61 DFSDSGEVLILFKQL----------IFEGIVA----------------------DKITLV 88
S E L LF+ + + G+V D L
Sbjct: 159 SNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLS 218
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
I+ A A L G+ +H A ++G + + NAL+ MY+KC
Sbjct: 219 IVIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDMYSKCS--------------- 263
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+I+S AREVF+ I +D++ W +M+ G + + EEAL L+ +M
Sbjct: 264 -DILS----------------AREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRM 306
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQNNITQDAFVKTALIDMYSKCGS 267
+ G P+E V ++ ACS +Q GR L + IT T +D+ S+ G
Sbjct: 307 VLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGH 366
Query: 268 LEEA--LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
L EA L+T + D TW ++ Y +R+
Sbjct: 367 LLEAEELMTTMPYE-PDEATWGALLSACTKYKDAEMCIRI 405
>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
Length = 697
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 148/465 (31%), Positives = 235/465 (50%), Gaps = 33/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H + + +++V +L+ Y + AR LF+ M R+V SWN ++S Y+
Sbjct: 140 IAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYS 199
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D S E + LF + +G++ D T++ L A + L G +H + + G E +
Sbjct: 200 DHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKH 259
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++ AL+ +Y + VD A VF E+ K
Sbjct: 260 IKTALMDIY--------------------------------VSHNCVDDAHRVFSEMFVK 287
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+ W M+ G + + A++ F KM+ + + D V++ +LS+CS LQ GR V
Sbjct: 288 DVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRV 347
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ + FV +A+IDMY+ CG+LE+A FY KDVV W MI G G G
Sbjct: 348 HALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYG 407
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+A+ +F QM+ G+ P+E+TFVSVL AC H+G++ EG Q+F M P ++H+ C
Sbjct: 408 TDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYAC 467
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
++D+L RAG L A FI MP + F Y LL AC + LG +++ + ++
Sbjct: 468 VIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPND 527
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVLLSN YAL G+W V R +++ + +K PG S I++
Sbjct: 528 AGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQ 572
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 191/396 (48%), Gaps = 43/396 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + + L + ++ NSL++ Y L DA+ +F P ++V SW L+S
Sbjct: 43 IHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDC 102
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E + +F+++ + +T+ + A A L + K+VHC+ + G E + +E A
Sbjct: 103 FVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETA 162
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ MY+K M A +LF+ M S RN+VS N +++GY D
Sbjct: 163 LVDMYSKFGCMGVARQLFESM-SERNVVSWNAIVSGYSD--------------------- 200
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
HG EEA++LF M +G+ D ++S++ A S+ LQ G +H FI+
Sbjct: 201 -----HGF-----SEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFII 250
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ D +KTAL+D+Y +++A F + KDV WT M+ G ++ + A++
Sbjct: 251 RTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIK 310
Query: 305 VFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----C 359
F +M + +K + + +L++C HSG + +G RR+ + ++ + +
Sbjct: 311 HFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQG----RRVHAL-AIKTCFANNIFVGSA 365
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
++D+ + G L A+ F M E + + A+++
Sbjct: 366 VIDMYANCGNLEDAKRFFYGM-GEKDVVCWNAMIAG 400
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
P + S+L L LQ +H I+ + +T + F+ +L++ Y CG L +A
Sbjct: 22 PLAQSHASILRKLKDLKPLQQ---IHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQI 78
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL- 333
F+ T CK+VV+WT +I GLA EA+ VF +M KPN T SVL A + GL
Sbjct: 79 FHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLI 138
Query: 334 -ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392
I + F GG + +E LVD+ S+ G + A + + M +E +S+ A+
Sbjct: 139 RIAKSVHCFWVRGG-FEGNVFVE--TALVDMYSKFGCMGVARQLFESM-SERNVVSWNAI 194
Query: 393 LSA 395
+S
Sbjct: 195 VSG 197
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 141/406 (34%), Positives = 226/406 (55%), Gaps = 5/406 (1%)
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
S+ + LF + G+ D + + A L +H GK +HC A GL+ ++
Sbjct: 106 SNPTRAISLFNAIRLLGMPPDSYSFPFVLKAVVCLSAVHVGKQIHCQAIVSGLDSHPSVV 165
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV--DK 180
+L+ MY+ C + A +LFD + ++ N ++ GY + + AR +F+ + D+
Sbjct: 166 TSLVQMYSSCAHLSSARKLFDG-ATFKHAPLWNAMLAGYAKVGNMSNARNLFECMPEKDR 224
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +++ G + P EA+ LF+ M+ + V PDE +++VLSAC+ L LQ G +H
Sbjct: 225 DVVSWTTLISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEWIH 284
Query: 241 RFILQNN--ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+I ++N + + + +LIDMY+K G + +A F K ++TWTT+I GLA +G
Sbjct: 285 NYIEKHNNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHGF 344
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G EAL VF ME+ +KPNE T ++VL+AC H GL+ G +F M Y ++P IEH+
Sbjct: 345 GKEALDVFSCMEKARVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIEPKIEHYG 404
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C++DLL RAG L +A E +++MP+E + +LLSA Y + L + ++ L
Sbjct: 405 CMIDLLGRAGYLQEAMELVRVMPSEANAAVWGSLLSASNRYGDAALAAEALRHLSVLEPH 464
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ Y LLSN YA G W E A R+ M++ K PG S ++L +
Sbjct: 465 NCGNYSLLSNTYAALGWWKEAAMVRKVMRDTCAEKVPGVSFVELNN 510
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 146/355 (41%), Gaps = 82/355 (23%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-------------- 46
+GK +H + LDS V SL+ Y A + AR LFD F
Sbjct: 145 VGKQIHCQAIVSGLDSHPSVVTSLVQMYSSCAHLSSARKLFDGATFKHAPLWNAMLAGYA 204
Query: 47 -------------------RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87
RDV SW TL+S Y E + LF+ ++ + + D+I +
Sbjct: 205 KVGNMSNARNLFECMPEKDRDVVSWTTLISGYTQTHSPNEAITLFRIMLLQNVQPDEIAI 264
Query: 88 VILFSACARLEKLHYGKTVHCYATKVG--LEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
+ + SACA L L G+ +H Y K L + + N+L+ MYAK ++ +A +LF M
Sbjct: 265 LAVLSACADLGALQLGEWIHNYIEKHNNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNM 324
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
K I+ W +++ G +EAL++F
Sbjct: 325 K--------------------------------HKTIITWTTVISGLALHGFGKEALDVF 352
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV-----HRFILQNNITQDAFVKTALID 260
M V P+E +++VLSACS + ++ GR + ++ ++ I +ID
Sbjct: 353 SCMEKARVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIEPKIEHYG----CMID 408
Query: 261 MYSKCGSLEEA--LVTFYKTDCKDVVTWTTMIEGLANYG---LGNEALRVFYQME 310
+ + G L+EA LV ++ V W +++ YG L EALR +E
Sbjct: 409 LLGRAGYLQEAMELVRVMPSEANAAV-WGSLLSASNRYGDAALAAEALRHLSVLE 462
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 35/237 (14%)
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252
+ + P A+ LF + G+ PD VL A LS + G+ +H + + +
Sbjct: 103 LSSSNPTRAISLFNAIRLLGMPPDSYSFPFVLKAVVCLSAVHVGKQIHCQAIVSGLDSHP 162
Query: 253 FVKTALIDMYSKCGSLEEA------------------LVTFYKT----------DC---- 280
V T+L+ MYS C L A L + K +C
Sbjct: 163 SVVTSLVQMYSSCAHLSSARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECMPEK 222
Query: 281 -KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339
+DVV+WTT+I G NEA+ +F M + ++P+E ++VL+AC G + G
Sbjct: 223 DRDVVSWTTLISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEW 282
Query: 340 LFRRM-GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ + +++ T+ L+D+ +++G + +A + + M I++ ++S
Sbjct: 283 IHNYIEKHNNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNM-KHKTIITWTTVISG 338
>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 737
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 159/469 (33%), Positives = 244/469 (52%), Gaps = 15/469 (3%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ +H H+ KTAL D ++ N LI Y + A F +P + SWNTL+S Y+
Sbjct: 28 LANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLISFYS 87
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E LF ++ +V + L S L + + VH A VG+E+ +
Sbjct: 88 KTGFFDEAHNLFDKMPQRNVV----SYNSLISG-----NLQWLRQVHGVAVIVGMEWNVI 138
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ Y KC E + + +F M RN+VS ++ Y +D A VF ++ K
Sbjct: 139 LNNALIDAYGKCGEPNLSFSVFCYM-PERNVVSWTSMVVAYTRACRLDEACRVFKDMPVK 197
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+ V W +++ G V+ +EA ++FK+M++EGV P VSV+ AC+ + + G+ VH
Sbjct: 198 NTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVH 257
Query: 241 RFILQNNITQDAF---VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
I++ + + + F V ALIDMY+KCG ++ A F +DVVTW T+I G A G
Sbjct: 258 GQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLITGFAQNG 317
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G E+L VF +M ++PN TF+ VL+ C H+GL EG QL M Y V+P EH+
Sbjct: 318 HGEESLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQYGVKPKAEHY 377
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMP--AEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
L+DLL R L +A I+ +P ++ + A+L AC + DL +K A + +L
Sbjct: 378 ALLIDLLGRRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHGNLDLARKAAEKLFEL 437
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
++ YV+L+N YA G W R MKE K+P S I+L++
Sbjct: 438 EPENTGRYVMLANIYAASGKWGGAKRIRNVMKERCLEKEPACSRIELRN 486
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267
M+ V E ++S C + ++ VH +++ + DAF+ LID YSKCG
Sbjct: 1 MLPNDVISSVEKYSFLISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGC 60
Query: 268 LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
E A TF K +W T+I + G +EA +F +M ++ +
Sbjct: 61 EESAHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNV------------- 107
Query: 328 CRHSGLITEGCQLFRRMGGV 347
++ LI+ Q R++ GV
Sbjct: 108 VSYNSLISGNLQWLRQVHGV 127
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 160/449 (35%), Positives = 234/449 (52%), Gaps = 11/449 (2%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
D N+L+ Y + + +A+ +F+KMP RDV SWNT++S Y D E LF
Sbjct: 261 DAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDV-- 318
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLNMENALLLMYAKCKEM 135
+ D T + S A+ L K V K + + NA++ Y + + M
Sbjct: 319 --APIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSW-----NAMMAAYVQRRMM 371
Query: 136 DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195
+EA LFD M R N+ S N ++ GY ++D AR +F + KD V W +M+ +
Sbjct: 372 EEAKELFDAMPCR-NVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQI 430
Query: 196 KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK 255
EE L+LFK+M G + VLS C+ ++ L+ G +H +++ FV
Sbjct: 431 GFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVG 490
Query: 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
AL+ MY KCGS+EEA F + + +DVV+W TMI G A +G G EAL VF M + K
Sbjct: 491 NALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTK 550
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
P++ T V VLAAC HSGL+ +G F M + V EH+ C++DLL RAG L +A
Sbjct: 551 PDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVN 610
Query: 376 FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435
+K MP E + ALL A + +LG+ A + +L ++ YVLLSN YA G
Sbjct: 611 LMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGK 670
Query: 436 WTEVAEARRNMKELQTRKKPGNSIIDLKH 464
W +V + R M E +K PG S I++++
Sbjct: 671 WRDVDKMRHIMHERGVKKVPGFSWIEVQN 699
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 169/404 (41%), Gaps = 65/404 (16%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
D ++ N I + R DA LF MP R ++NT+++ Y + L F+
Sbjct: 104 DMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRS 163
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
+ R + Y +H L + ++L + A
Sbjct: 164 I-------------------PRPDSFSYNTLLHA----------LGVSSSLADVRA---- 190
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
LFDEM ++ VS N++I+ + + LV LAR FD +KD V W M+ V+
Sbjct: 191 ------LFDEM-PVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVR 243
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ--YGRLVHRFILQNNITQDA 252
+ +EA ELF + +M + S + Q + ++ R ++ N
Sbjct: 244 NGRIQEARELFDSRTEWDAISWNALMAGYVQR-SQIEEAQKMFNKMPQRDVVSWNT---- 298
Query: 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
++ Y++ G + EA F +DV TWT ++ G A G+ EA RVF M K
Sbjct: 299 -----MVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDK 353
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
N ++ +++AA ++ E +LF M + + ++ ++AG+L +
Sbjct: 354 ----NAVSWNAMMAAYVQRRMMEEAKELFDAMPCR-----NVASWNTMLTGYAQAGMLDE 404
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
A +MP +D +S+ A+L+A YS+ ++ ++G
Sbjct: 405 ARAIFGMMPQKDA-VSWAAMLAA---YSQIGFSEETLQLFKEMG 444
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH+ + K +VGN+L+ Y + +A F++M RDV SWNT+++ Y
Sbjct: 471 GMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYAR 530
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACAR---LEK-LHYGKTVHCYATKVGLEY 117
E L +F + D ITLV + +AC+ +EK + Y ++H G+
Sbjct: 531 HGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMH---RDFGVAT 587
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEM 145
++ + + +DEA+ L +M
Sbjct: 588 KPEHYTCMIDLLGRAGRLDEAVNLMKDM 615
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/464 (33%), Positives = 245/464 (52%), Gaps = 5/464 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMAL--FTDARVLFDKMPFRDVGSWNTLMSIYN 60
K LHAH +T L V L F L A +FD+MP +NTL+ +
Sbjct: 24 KLLHAHAFRTRLHDHTVVLGKLFRFAAVSPLGDLRYAHRMFDQMPHPTTFFYNTLIRAHA 83
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + F + + D+ + L + +R L + VH K G L+
Sbjct: 84 HSTTPSLSSLSFNLMRQNNVAPDQFSFNFLLKSRSRTTPLTHHNDVHGAVLKFGFCRHLH 143
Query: 121 MENALLLMYAKCKEMDEALRLFD---EMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
++N L+ YA A R+F+ ++G ++VS + L+ ++ +++AR VFDE+
Sbjct: 144 VQNGLIHFYANRGMTLLARRVFEDVLQLGLEVDVVSWSGLLVAHVKAGELEVARRVFDEM 203
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+D+V W +M+ G +AK+P EALELF +M GV PDE MVS++SAC+SL +++ G
Sbjct: 204 PQRDVVSWTAMLTGYSQAKRPREALELFGEMRRSGVWPDEVTMVSLVSACASLGDMETGM 263
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+VHRF+ +N + ALIDMY KCG LEEA F+ K ++TW TM+ ANYG
Sbjct: 264 MVHRFVEENGFGWMVALCNALIDMYGKCGCLEEAWRVFHGMTRKSLITWNTMVTVCANYG 323
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+EA R+F M G+ P+ T +++L A H GL+ EG +LF M Y V+P IEH+
Sbjct: 324 NADEAFRLFEWMVCSGVVPDSVTLLALLVAYAHKGLVDEGIRLFESMDRDYGVEPRIEHY 383
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
++D+L RAG L +A + + +P + ALL AC + + ++G+K+ +++L
Sbjct: 384 GAVIDMLGRAGRLQEAYDLLTNIPIPCNDAVWGALLGACRIHGDVEMGEKLIKKLLELKP 443
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
Y+LL + Y G E E R+ M + RK PG S ++
Sbjct: 444 DEGGYYILLRDIYVAAGQTVEANETRQAMLASRARKNPGCSWVE 487
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H V + + + N+LI YG+ +A +F M + + +WNT++++ +
Sbjct: 262 GMMVHRFVEENGFGWMVALCNALIDMYGKCGCLEEAWRVFHGMTRKSLITWNTMVTVCAN 321
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYMLN 120
+ ++ E LF+ ++ G+V D +TL+ L A A + G + G+E +
Sbjct: 322 YGNADEAFRLFEWMVCSGVVPDSVTLLALLVAYAHKGLVDEGIRLFESMDRDYGVEPRIE 381
Query: 121 MENALLLMYAKCKEMDEALRLF 142
A++ M + + EA L
Sbjct: 382 HYGAVIDMLGRAGRLQEAYDLL 403
>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 637
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/462 (31%), Positives = 242/462 (52%), Gaps = 32/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K H + L D+ + N LI+ Y + AR +FD M R + SWNT++ +Y
Sbjct: 82 AKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTR 141
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L +F ++ EG + T+ + SAC K +HC + K L+ L +
Sbjct: 142 NRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYV 201
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ALL +YAKC +++A+ +VF+ + DK
Sbjct: 202 GTALLDLYAKCGMINDAV--------------------------------QVFESMQDKS 229
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W SM+ G V++K EEAL L+++ + ++ + SV+ ACS+L+ L G+ +H
Sbjct: 230 SVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHA 289
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I ++ + FV ++ +DMY+KCGSL E+ + F + K++ W T+I G A + E
Sbjct: 290 VIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKE 349
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
+ +F +M++ G+ PNE TF S+L+ C H+GL+ EG + F+ M Y + P + H+ C+V
Sbjct: 350 VMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMV 409
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L RAGLL +A E IK +P E + +LL++C +L + A + +L ++
Sbjct: 410 DILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAG 469
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+VLLSN YA W E+A++R+ +++ +K G S ID+K
Sbjct: 470 NHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIK 511
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%)
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC 280
+ +L C+ + + H ++ + D + LI+ YSKCG +E A F
Sbjct: 67 IEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLE 126
Query: 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
+ +V+W TMI + +EAL +F++M +G K +E T SVL+AC
Sbjct: 127 RSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSAC 174
>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 558
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 148/428 (34%), Positives = 233/428 (54%), Gaps = 39/428 (9%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR +F ++P D ++NT++ ++ F S L F + GI D T + AC+R
Sbjct: 41 ARYVFSRIPSPDTIAYNTIIRSHSRFFPS-HSLSYFFSMRSNGIPLDNFTFPFVLKACSR 99
Query: 97 LE-KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLN 155
L+ LH +H K GL + ++NAL+ +Y C ++ A+++FDEM R
Sbjct: 100 LQINLH----LHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSER------- 148
Query: 156 ILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVT 214
D V W +++ + EAL+LF+KM +++ V
Sbjct: 149 -------------------------DSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVV 183
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
PDE M+SV+SA S L +L+ GR V FI + + TALIDM+S+CGS++E++V
Sbjct: 184 PDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVV 243
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F K ++V+TWT +I GL +G EAL +F+ M + G++P+ TF VL AC H GL+
Sbjct: 244 FEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLV 303
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394
EG +F + VY + P ++H+ C+VD+L RAGLL +A +F++ MP + I ++ LL
Sbjct: 304 KEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLG 363
Query: 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK 454
AC+ ++ L +KV + K+ + + VLLSN Y G W E A R M+E + K+
Sbjct: 364 ACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKE 423
Query: 455 PGNSIIDL 462
PG S I++
Sbjct: 424 PGCSSINV 431
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 145/325 (44%), Gaps = 66/325 (20%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LH+ + K L SDI+V N+LI YG A +FD+M RD SW+T+++ + +
Sbjct: 106 LHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGY 165
Query: 65 SGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123
+ E L LF+++ E +V D++T++ + SA + L L G+ V + ++G + +
Sbjct: 166 ASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGT 225
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ M+++C +DE++ +F++M RN+++ LING
Sbjct: 226 ALIDMFSRCGSIDESIVVFEKMAV-RNVLTWTALINGL---------------------- 262
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
+HG + EAL +F M GV PD VL ACS +G LV
Sbjct: 263 ----GIHG-----RSMEALAMFHSMRKSGVQPDYVTFSGVLVACS------HGGLVKEGW 307
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
+ + L+D Y M++ L GL NEA
Sbjct: 308 DIFESIRKVYGMDPLLDHYG------------------------CMVDILGRAGLLNEA- 342
Query: 304 RVFYQMERKGIKPNEATFVSVLAAC 328
+ +ER +KPN + ++L AC
Sbjct: 343 --YDFVERMPMKPNSIIWRTLLGAC 365
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 6/205 (2%)
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
E + AR VF I D + + +++ + P +L F M G+ D VL
Sbjct: 36 ESLSYARYVFSRIPSPDTIAYNTIIRSHSRF-FPSHSLSYFFSMRSNGIPLDNFTFPFVL 94
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
ACS LQ +H I++ + D FV+ ALI +Y CGSLE A+ F + +D V
Sbjct: 95 KACS---RLQINLHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSV 151
Query: 285 TWTTMIEGLANYGLGNEALRVFYQME-RKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343
+W+T+I N G +EAL +F +M+ + P+E T +SV++A H G + G + R
Sbjct: 152 SWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELG-RWVRA 210
Query: 344 MGGVYRVQPTIEHFVCLVDLLSRAG 368
G ++ L+D+ SR G
Sbjct: 211 FIGRLGFGVSVALGTALIDMFSRCG 235
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 79/174 (45%), Gaps = 1/174 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + A + + + +G +LI + R ++ V+F+KM R+V +W L++
Sbjct: 204 LGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLG 263
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
S E L +F + G+ D +T + AC+ + G + KV G++ +L
Sbjct: 264 IHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLL 323
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
+ ++ + + ++EA + M + N + L+ ++ + LA +V
Sbjct: 324 DHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKV 377
>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
Length = 1133
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/469 (32%), Positives = 249/469 (53%), Gaps = 6/469 (1%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + K D D+Y+ +L++FYGR A +F +MP + WN + +
Sbjct: 541 LGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNL 600
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLV-ILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ + LF+++ F + A+ T+V +L ++ + L L+ GK H Y + G + +
Sbjct: 601 QSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDV 660
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI-- 177
+ +L+ MY K + A +FD M +R NI + N L++GY + + A + +++
Sbjct: 661 YVGTSLIDMYVKNHSLTSAQAVFDNMKNR-NIFAWNSLVSGYSFKGMFEDALRLLNQMEK 719
Query: 178 --VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
+ D+V W M+ G +EAL F +M EGV P+ + +L AC+SLS LQ
Sbjct: 720 EGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQK 779
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G+ +H ++N +D FV TALIDMYSK SL+ A F + K + +W MI G A
Sbjct: 780 GKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAI 839
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
+GLG EA+ VF +M++ G+ P+ TF ++L+AC++SGLI EG + F M YR+ P +E
Sbjct: 840 FGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLE 899
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
H+ C+VDLL RAG L +A + I MP + + ALL +C + + A N+ KL
Sbjct: 900 HYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKL 959
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ Y+L+ N Y++ W ++ R M R + S I +
Sbjct: 960 EPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQ 1008
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/377 (23%), Positives = 169/377 (44%), Gaps = 38/377 (10%)
Query: 3 KGLHAHVTK--TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K +HA + K + D N + + G ++ A V + +P R+ WN+ + +
Sbjct: 440 KMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLP-RNYLKWNSFVEEFK 498
Query: 61 DFSDSGEVLI-LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ S +++ +FK+L +G+V D + C R+ + G +H K G + +
Sbjct: 499 SSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDV 558
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ AL+ Y +C +++ A +VF E+ +
Sbjct: 559 YLRCALMNFYGRCWGLEK--------------------------------ANQVFHEMPN 586
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC-SSLSNLQYGRL 238
+ +LW + +++++ ++ +ELF+KM + + +V VL A S L L G+
Sbjct: 587 PEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKE 646
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
H ++L+N D +V T+LIDMY K SL A F +++ W +++ G + G+
Sbjct: 647 THGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGM 706
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
+ALR+ QME++GIKP+ T+ +++ G E F +M V P
Sbjct: 707 FEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQ-EGVMPNSASIT 765
Query: 359 CLVDLLSRAGLLYQAEE 375
CL+ + LL + +E
Sbjct: 766 CLLRACASLSLLQKGKE 782
>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 631
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 154/465 (33%), Positives = 257/465 (55%), Gaps = 17/465 (3%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGR-----MALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+H + + SD++V N+L+ Y R AR +FD+M RDV SWN+++ +Y
Sbjct: 133 VHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGGGVGAARQVFDEMVDRDVVSWNSIVGVY 192
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYM 118
D+ + F+ + +V+ T+V F AR+ + + V ++ + +
Sbjct: 193 MSSGDATGAMGFFEAMPERNVVSWN-TVVAGF---ARMGDMVTARAVFDRMPSRNAVSW- 247
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
N ++ YA +++ A +FD M ++++VS +++ Y + +D E+FD +
Sbjct: 248 ----NLMISGYAMSGDVEAARSVFDRM-DQKDVVSWTAMVSAYAKIGDLDTVNELFDHMP 302
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGR 237
K++V W +M+ G + +EAL F+ M+ EG PDE +VSV+SAC+ L +++Y
Sbjct: 303 VKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCN 362
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
+ FI ++NI + ALIDM++KCG + A FYK + + ++TWTTMI G A G
Sbjct: 363 WISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNG 422
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
L +AL V+ M R+G++ ++ F++ LAAC H GL+ EG +F M Y +QP +EH+
Sbjct: 423 LCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVERYNIQPRMEHY 482
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL RAG L +A FI+ MP E + + LL +C+ + +L + V+ + +L
Sbjct: 483 GCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLCSCVAHGNAELIEYVSKKITELEP 542
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ VL+SN ALEG W V +AR +M+ K PG+S I +
Sbjct: 543 FNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSSIQV 587
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 46/253 (18%)
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC----- 265
+GV P+ +L AC+ L + VH I++ D FV+ AL+D+Y +C
Sbjct: 105 QGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGG 164
Query: 266 -------------------------------GSLEEALVTFYKTDCKDVVTWTTMIEGLA 294
G A+ F ++VV+W T++ G A
Sbjct: 165 GGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFA 224
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
G A VF +M + N ++ +++ SG + +F RM Q +
Sbjct: 225 RMGDMVTARAVFDRMPSR----NAVSWNLMISGYAMSGDVEAARSVFDRMD-----QKDV 275
Query: 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414
+ +V ++ G L E MP ++ +S+ A+++ S +D + MM
Sbjct: 276 VSWTAMVSAYAKIGDLDTVNELFDHMPVKN-LVSWNAMITGYNHNSRYDEALRTFQLMML 334
Query: 415 LGNQSHEAYVLLS 427
G + L+S
Sbjct: 335 EGRFRPDEATLVS 347
>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/466 (31%), Positives = 246/466 (52%), Gaps = 48/466 (10%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIYN 60
K +HAH+ KT HF+ + ++ + P WN +++ Y
Sbjct: 95 KQIHAHIIKT-------------HFHHAL------QIPLNDFPSGLSPSAQWNFVITSYT 135
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L ++ QL D + AC ++ GK +H + K GL+ +
Sbjct: 136 KRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVF 195
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMEL----VDLAREVFDE 176
+ NAL+LMY +C ++ A +FD+M R++VS +DM + LAR++F+
Sbjct: 196 VGNALMLMYGECACVEYARLVFDKM-MERDVVSWIPTTTALLDMYAKCGHLGLARQLFNG 254
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ K +V W +M+ GC+++ + EE +LF +M +E + P+E M++
Sbjct: 255 LTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLN-------------- 300
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+ + D + TAL+DMY+KCG + A F + +D+ W +I G A +
Sbjct: 301 --------KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMH 352
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G G EAL +F +MER+G+KPN+ TF+ +L AC H+GL+TEG +LF +M + + P IEH
Sbjct: 353 GYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEH 412
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL RAGLL +A E IK MP + I + AL++AC + LG+ A ++++
Sbjct: 413 YGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIE 472
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ VL+SN YA W++ A R+ MK + +K+PG+S+I++
Sbjct: 473 PENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEV 518
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 133/294 (45%), Gaps = 64/294 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSW-NTLMSIY 59
+GK +H V K LD D++VGN+L+ YG A AR++FDKM RDV SW T ++
Sbjct: 177 LGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALL 236
Query: 60 NDFSDSGEVLILFKQLIFEGIVADK-ITLVILFSACARLEKLHYGKTV-------HCYAT 111
+ ++ G L L +QL F G+ ++ + + C R +L G + + +
Sbjct: 237 DMYAKCGH-LGLARQL-FNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPN 294
Query: 112 KVGLEYMLNME---------NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI 162
++ MLN E AL+ MYAKC +++ A RLF E SR
Sbjct: 295 EI---TMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISR-------------- 337
Query: 163 DMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS 222
DI +W +++ G EEAL++F +M +GV P++ +
Sbjct: 338 ------------------DICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIG 379
Query: 223 VLSACSSLSNLQYG-----RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
+L ACS + G ++VH F L I ++D+ + G L+EA
Sbjct: 380 LLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYG----CMVDLLGRAGLLDEA 429
>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
Length = 767
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 153/474 (32%), Positives = 248/474 (52%), Gaps = 41/474 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSIY 59
G +H V K ++GNS++H Y A +F+ +P RDV SWN+L+S +
Sbjct: 184 GSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGF 243
Query: 60 NDFSDSGEVLILFKQLIFEGIVA---DKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
++ L F+ ++ EG A +++T++ L +CA L + VH E
Sbjct: 244 XLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVH--------E 295
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
Y+ + ++LL+ +++V L L++ + + LARE+FD
Sbjct: 296 YISSRHSSLLVA--------------------KDVVVLTALLDMHARCGNLALAREIFDG 335
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG------VTPDEEVMVSVLSACSSL 230
+ K++V W +M+ G + PEEAL LF++M+ EG V P+ +VSV++ACS L
Sbjct: 336 VEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRL 395
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD--CKDVVTWTT 288
+ ++H++ + + QDA + +ALIDM +KCG +E F + D + VV+W++
Sbjct: 396 GASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSS 455
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
MI +G G AL +F +M G +PNE T++SVL+AC H+GL+ +G F M Y
Sbjct: 456 MIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDY 515
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
+ PT +H+ CLVDLL RAG L +A I MP + + +LL+AC + LG+ V
Sbjct: 516 GMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIV 575
Query: 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ L + S +VLL+N Y G W +V R ++ RK PG S I++
Sbjct: 576 EKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEI 629
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 113/422 (26%), Positives = 195/422 (46%), Gaps = 67/422 (15%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIYNDF 62
+HA++T+ L +D + +L+ YG+ A +FD+MP DV SW L+S Y+
Sbjct: 74 VHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSN 133
Query: 63 SDSGEVLILFKQLIF-------EGIVADKITLVILFSACA---RLEKLHYGKTVHCYATK 112
E F ++ + E D ++L L SACA L G VH K
Sbjct: 134 GCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVK 193
Query: 113 VGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG-SRRNIVSLNILINGYIDMELVDLAR 171
G ++ N+++ MY+ CK++ A R+F+ + +R++VS N LI+G+
Sbjct: 194 YGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGF---------- 243
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG---VTPDEEVMVSVLSACS 228
++G + E AL F+ M+ EG V P+ ++++L +C+
Sbjct: 244 ----------------XLNG-----EAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCA 282
Query: 229 SLSNLQYGRLVHRFILQNN----ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
L ++ VH +I + + +D V TAL+DM+++CG+L A F + K+VV
Sbjct: 283 ELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVV 342
Query: 285 TWTTMIEGLANYGLGNEALRVFYQMERKG------IKPNEATFVSVLAACRHSGLITEGC 338
W+ MI G EALR+F QM +G +KPN T VSV+AAC G
Sbjct: 343 CWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSAS 402
Query: 339 QLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLLYQAEE-FIKIMPAEDKFISYKALL 393
+ + Y V ++ L+D+ ++ G + + F ++ + +S+ +++
Sbjct: 403 MIHK-----YAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMI 457
Query: 394 SA 395
A
Sbjct: 458 GA 459
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 148/365 (40%), Gaps = 38/365 (10%)
Query: 43 KMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHY 102
+ +D WN+L++ N + L F ++ + ++ T L ACA L +L
Sbjct: 12 SISHKDTFHWNSLIA-KNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70
Query: 103 GKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR-NIVSLNILINGY 161
VH Y T++GL AL+ Y KC A ++FDEM ++VS LI+ Y
Sbjct: 71 TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130
Query: 162 IDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMV 221
VD A F + W G E D +
Sbjct: 131 SSNGCVDEAFXAFGRM------RWMRGWDG------------------SECCGVDVVSLG 166
Query: 222 SVLSACS---SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF--Y 276
+++SAC+ + L+ G VH +++ + +++ MYS C + A F
Sbjct: 167 ALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGI 226
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG---IKPNEATFVSVLAACRHSGL 333
+ +DVV+W ++I G G ALR F M +G ++PN T +++L +C G
Sbjct: 227 PIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGC 286
Query: 334 ITEGCQLFRRMGGVYR---VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
+ + + + V + L+D+ +R G L A E + ++ + +
Sbjct: 287 VETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKN-VVCWS 345
Query: 391 ALLSA 395
A+++
Sbjct: 346 AMIAG 350
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 166/502 (33%), Positives = 257/502 (51%), Gaps = 56/502 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIY 59
G G HAHV K SD +V N++I Y R+ AR +FD++P R V WN ++S Y
Sbjct: 114 GIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGY 173
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-VHCYATKVGLEYM 118
+ G+ LF + + IT + + A+++ L + C + + +
Sbjct: 174 WKWESEGQAQWLFDVMPERNV----ITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSW- 228
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEM-------------------GSR----------R 149
NA+L YA+ +EALRLFDEM SR R
Sbjct: 229 ----NAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVR 284
Query: 150 NIVSLNILINGYIDMELVDL---------AREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
+ I +N ++ L+D+ AR++F+ + +++V W SM+ G + Q
Sbjct: 285 TLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAM 344
Query: 201 ALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
A+ELFK+MI + +TPDE MVSV+SAC L L+ G V RF+ +N I A+I
Sbjct: 345 AIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMI 404
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
MYS+CGS+E+A F + +DVV++ T+I G A +G G EA+ + M+ GI+P+
Sbjct: 405 FMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRV 464
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
TF+ VL AC H+GL+ EG ++F + P I+H+ C+VDLL R G L A+ ++
Sbjct: 465 TFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMER 519
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
MP E Y +LL+A + + +LG+ AN + +L + ++LLSN YA G W +V
Sbjct: 520 MPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDV 579
Query: 440 AEARRNMKELQTRKKPGNSIID 461
R MK+ +K G S ++
Sbjct: 580 ERIREAMKKGGVKKTTGWSWVE 601
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/427 (26%), Positives = 202/427 (47%), Gaps = 41/427 (9%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRM-ALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
+ LHA + +L Y LI+ R+ A +LF+ +V + +++ Y+
Sbjct: 18 RQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFYSH 77
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
D +V+++++Q+ G+ D IL + G H + K+G +
Sbjct: 78 LQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGT-----GGIGFHAHVLKLGHGSDAFV 132
Query: 122 ENALLLMYAKCKEMDEALRLFDEMG--------------------------------SRR 149
NA++ MYA+ + A ++FDE+ R
Sbjct: 133 RNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPER 192
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N+++ ++ GY ++ ++ AR FD + ++ +V W +M+ G + EEAL LF +M+
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMV 252
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+ G+ PDE V+V+SACSS + + R + Q I + FV+TAL+DMY+K G L+
Sbjct: 253 NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLD 312
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAAC 328
A F ++VVTW +MI G A G A+ +F +M K + P+E T VSV++AC
Sbjct: 313 SARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISAC 372
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
H G + G + R + +++ +I ++ + SR G + A+ + M D +S
Sbjct: 373 GHLGALELGNWVVRFLTE-NQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRD-VVS 430
Query: 389 YKALLSA 395
Y L+S
Sbjct: 431 YNTLISG 437
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 105/244 (43%), Gaps = 24/244 (9%)
Query: 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEV 68
+T+ + I N++I Y R DA+ +F +M RDV S+NTL+S + E
Sbjct: 388 LTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEA 447
Query: 69 LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
+ L + GI D++T + + +AC+ L G+ V +++ M + L
Sbjct: 448 INLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMVDLL--- 504
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDL-AREVFDEIVDK--DI 182
+ E+++A R + M + L+N + +EL +L A ++F+ D +
Sbjct: 505 -GRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNF 563
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
+L ++ + K E E KK + + S ++YG +H+F
Sbjct: 564 ILLSNIYASAGRWKDVERIREAMKK--------------GGVKKTTGWSWVEYGGKLHKF 609
Query: 243 ILQN 246
I+ +
Sbjct: 610 IVAD 613
>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1134
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 148/466 (31%), Positives = 245/466 (52%), Gaps = 34/466 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H K LD D+ V N+L+ Y + + +F +MP D SWN+ +
Sbjct: 575 LGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALA 634
Query: 61 DFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ S + L F +++ G +++T + + +A + L G +H K +
Sbjct: 635 KYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDN 694
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ENALL Y KC++M++ +F M RR+ VS
Sbjct: 695 AIENALLAFYGKCEQMEDCEIIFSRMSERRDEVS-------------------------- 728
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
W SM+ G + + +A++L M+ G D +VLSAC+S++ L+ G V
Sbjct: 729 -----WNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEV 783
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ + D V +AL+DMY+KCG ++ A F +++ +W +MI G A +G G
Sbjct: 784 HACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHG 843
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
+AL++F +M++ G P+ TFV VL+AC H GL+ EG + F+ MG VY + P IEHF C
Sbjct: 844 QKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSC 903
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYS--EFDLGKKVANNMMKLGN 417
+VDLL RAG + + E+FIK MP + + ++ +L AC + +LG++ A +++L
Sbjct: 904 MVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEP 963
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Q+ YVLLSN +A G+W +V EAR M++ +K G S +++K
Sbjct: 964 QNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMK 1009
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/412 (25%), Positives = 189/412 (45%), Gaps = 49/412 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMA-LFTDARVLFDKMPFRDVGSWNTLMSIY 59
+G +HA + K SD+ + N L+ Y + DA +FD++ FR+ +WN+++S+Y
Sbjct: 261 LGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVY 320
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
D+ LF + EG V L
Sbjct: 321 CRRGDAVSAFKLFSVMQMEG---------------------------------VELNLRP 347
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSR-------RNIVSLNILINGYIDMELVDLARE 172
N L+ A C D L L ++M +R R++ + L+NG+ L+D A+
Sbjct: 348 NEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKM 407
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232
+F ++ D++ V +M G + Q EEA ++FK+M D V + E +V +LS + SN
Sbjct: 408 IFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL-VEINSESLVVLLSTFTEFSN 466
Query: 233 LQYGRL----VHRFILQNNITQDAF-VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
L+ G+ VH ++ ++ + + AL++MY KC +++ A F KD V+W
Sbjct: 467 LKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWN 526
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
+MI GL + EA+ F+ M+R G+ P+ + +S L++C G +T G Q+ G
Sbjct: 527 SMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGE-GFK 585
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399
+ + + L+ L + + + ++ MP D+ +S+ + + A Y
Sbjct: 586 WGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQ-VSWNSFIGALAKY 636
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 156/338 (46%), Gaps = 39/338 (11%)
Query: 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEV 68
+ K+ D+YVG++L++ + R L A+++F +M R+ + N LM E
Sbjct: 377 IEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEA 436
Query: 69 LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT----VHCYATKVGL-EYMLNMEN 123
+FK++ + + + +LV+L S L GK VH Y + GL + +++ N
Sbjct: 437 AKVFKEMK-DLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGN 495
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
AL+ MY KC +D A VF + KD V
Sbjct: 496 ALVNMYGKCTAIDNAC--------------------------------SVFQLMPSKDTV 523
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W SM+ G ++ EEA+ F M G+ P ++S LS+CSSL L GR +H
Sbjct: 524 SWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEG 583
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN-EA 302
+ + D V AL+ +Y++ S+ E F++ D V+W + I LA Y +A
Sbjct: 584 FKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQA 643
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
L+ F +M + G +PN TF+++LAA ++ G Q+
Sbjct: 644 LKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQI 681
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 97/182 (53%), Gaps = 8/182 (4%)
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
N LIN Y+ + + AR++FDE+ K++V W ++ G + + P+EA LFK +I G+
Sbjct: 179 NTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLL 238
Query: 215 PDEEVMVSVLSACSSL--SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC-GSLEEA 271
P+ + S L AC + ++ G +H FI + D + L+ MYS C GS+++A
Sbjct: 239 PNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDA 298
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI----KPNEATFVS-VLA 326
F + ++ VTW ++I G A ++F M+ +G+ +PNE T S V A
Sbjct: 299 HRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTA 358
Query: 327 AC 328
AC
Sbjct: 359 AC 360
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
S+L +H + + T D F LI++Y + G+L A F + K++V+W+ +I
Sbjct: 154 SSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLI 213
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
G + +EA +F + G+ PN S L AC+ G
Sbjct: 214 SGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCG 255
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 139/413 (33%), Positives = 232/413 (56%), Gaps = 34/413 (8%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYA 110
WNTL+ Y + +S L++++ G+V D T L A + + G+T+H
Sbjct: 88 WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147
Query: 111 TKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLA 170
+ G ++ ++N+LL +YA C ++ A +
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYK------------------------------ 177
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230
VFD++ +KD+V W S+++G + +PEEAL L+ +M +G+ PD +VS+LSAC+ +
Sbjct: 178 --VFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKI 235
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
L G+ VH ++++ +T++ L+D+Y++CG +EEA F + K+ V+WT++I
Sbjct: 236 GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 295
Query: 291 EGLANYGLGNEALRVFYQMER-KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
GLA G G EA+ +F ME +G+ P E TFV +L AC H G++ EG + FRRM Y+
Sbjct: 296 VGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYK 355
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
++P IEHF C+VDLL+RAG + +A E+IK MP + + ++ LL AC + + DL +
Sbjct: 356 IEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFAR 415
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+++L YVLLSN YA E W++V + R+ M +K PG+S++++
Sbjct: 416 IQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 468
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 160/329 (48%), Gaps = 51/329 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ V ++ S IYV NSL+H Y A +FDKMP +D+ +WN S+ N
Sbjct: 139 LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN---SVIN 195
Query: 61 DFSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
F+++G E L L+ ++ +GI D T+V L SACA++ L GK VH Y KVGL
Sbjct: 196 GFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTR 255
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L+ N LL +YA+C ++EA LFDEM
Sbjct: 256 NLHSSNVLLDLYARCGRVEEAKTLFDEM-------------------------------- 283
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYG 236
VDK+ V W S++ G +EA+ELFK M EG+ P E V +L ACS ++ G
Sbjct: 284 VDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG 343
Query: 237 -----RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMI 290
R+ + ++ I ++D+ ++ G +++A + +VV W T++
Sbjct: 344 FEYFRRMREEYKIEPRIEHFG----CMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 399
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEA 319
+ G+ L F +++ ++PN +
Sbjct: 400 GACTVH--GDSDLAEFARIQILQLEPNHS 426
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 118/226 (52%), Gaps = 4/226 (1%)
Query: 170 AREVFDEIVDK-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSAC 227
A +VF +I ++ +W +++ G + A L+++M G V PD ++ A
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+++++++ G +H ++++ +V+ +L+ +Y+ CG + A F K KD+V W
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
++I G A G EAL ++ +M KGIKP+ T VS+L+AC G +T G ++ M V
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV 251
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
+ + L+DL +R G + +A+ M + +S+ +L+
Sbjct: 252 GLTR-NLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 295
>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 700
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/465 (31%), Positives = 240/465 (51%), Gaps = 33/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H V + D+ + + NS+++ YG+ A LF +MP++D+ SW+++++ Y
Sbjct: 225 LGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYA 284
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D L LF ++I + I +++T++ ACA L GK +H A G E +
Sbjct: 285 DNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDIT 344
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MY KC A+ LF+ M K
Sbjct: 345 VSTALMDMYMKCFSPKNAIDLFNRMPK--------------------------------K 372
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W + G + ++L +F M+ G PD +V +L+A S L +Q +H
Sbjct: 373 DVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLH 432
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
F+ ++ + F+ +LI++Y+KC S++ A F KDVVTW+++I +G G
Sbjct: 433 AFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGE 492
Query: 301 EALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EAL++FYQM +KPN+ TFVS+L+AC H+GLI EG ++F M Y++ P EH+
Sbjct: 493 EALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNTEHYGI 552
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL R G L +A + I MP + + ALL AC + +G+ A N+ L
Sbjct: 553 MVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNH 612
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
Y LLSN Y ++ +W + A+ R +KE + +K G S++++K+
Sbjct: 613 AGYYTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIVGQSMVEIKN 657
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 119/421 (28%), Positives = 194/421 (46%), Gaps = 44/421 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
LH+ K L D +V L Y R A A LF++ P + V WN L+ Y
Sbjct: 23 LHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGK 82
Query: 65 SGEVLILFKQLIFEGIV---ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF Q+ + I D T+ I +C+ L+KL GK +H + K ++ + +
Sbjct: 83 WVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFV 142
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+AL+ +Y+KC +M++A++ VF E +D
Sbjct: 143 GSALIELYSKCGQMNDAVK--------------------------------VFTEYPKQD 170
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMID-EGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+VLW S++ G + PE AL F +M+ E V+PD +VS SAC+ LS+ GR VH
Sbjct: 171 VVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVH 230
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
F+ + + +++++Y K GS+ A F + KD+++W++M+ A+ G
Sbjct: 231 GFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAET 290
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F +M K I+ N T +S L AC S + EG + ++ Y + I L
Sbjct: 291 NALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHI-HKLAVNYGFELDITVSTAL 349
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK---VANNMMKLGN 417
+D+ + A + MP +D +S+ L S Y+E + K V NM+ G
Sbjct: 350 MDMYMKCFSPKNAIDLFNRMPKKD-VVSWAVLFSG---YAEIGMAHKSLGVFCNMLSYGT 405
Query: 418 Q 418
+
Sbjct: 406 R 406
>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
Length = 526
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 135/427 (31%), Positives = 229/427 (53%), Gaps = 32/427 (7%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR +FDK+ V +WNTL+S Y + + LF+++ + + D+ TL ++ S+C++
Sbjct: 93 ARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSK 152
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
L L +G+ VH + + L + + + L+ MY+KC +
Sbjct: 153 LGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQ---------------------- 190
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
+ +AR +F+++ ++D+V W S++ G +EA + FK+M + G+ P
Sbjct: 191 ----------IGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPT 240
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
E S++++CS LS++ +GR +H ++++ Q+ +V +ALIDMY+KCG++++A + F
Sbjct: 241 ESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFD 300
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
K++V W MI G A GLG++A+ +F M KP+ TF++VL C HSGL+ +
Sbjct: 301 TMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDK 360
Query: 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
F M Y + P EH+ CL+D L RAG + E I MP +D I ++ LL+AC
Sbjct: 361 AMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAAC 420
Query: 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPG 456
+ + +LGK A ++ ++ ++ YVLLSN YA G + + R M K G
Sbjct: 421 VVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRG 480
Query: 457 NSIIDLK 463
S ID K
Sbjct: 481 YSWIDQK 487
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 157/326 (48%), Gaps = 51/326 (15%)
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY--------------------- 161
N+L+ MY KC EMDEA+++F+ + S IVS NILI G+
Sbjct: 12 NSLIDMYTKCVEMDEAVKVFESLPSV-TIVSWNILITGFGQEGSCAKAVEVLSLMQEAGF 70
Query: 162 --------------IDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
I V AR +FD+I + W +++ G + +Q ++ +ELF++
Sbjct: 71 EPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRR 130
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH----RFILQNNITQDAFVKTALIDMYS 263
M + V PD + +LS+CS L L +GR VH RF+L N D FV + L+DMYS
Sbjct: 131 MQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHN----DMFVASGLVDMYS 186
Query: 264 KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323
KCG + A F K +DVV W ++I GL + L EA F QM GI P E+++ S
Sbjct: 187 KCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYAS 246
Query: 324 VLAACRHSGLITEGCQLFRR-MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382
++ +C I G Q+ + M Y + L+D+ ++ G + A F M
Sbjct: 247 MINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGS--ALIDMYAKCGNMDDARLFFDTMMM 304
Query: 383 EDKFISYKALLSACITYSEFDLGKKV 408
++ +++ ++ Y++ LG K
Sbjct: 305 KN-IVAWNEMIHG---YAQNGLGDKA 326
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 145/321 (45%), Gaps = 39/321 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+ + L +D++V + L+ Y + AR +F+KM RDV WN+++S
Sbjct: 159 GRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTI 218
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S + E FKQ+ GI+ + + + ++C+RL + +G+ +H K G + + +
Sbjct: 219 HSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYV 278
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+AL+ MYAKC MD+A FD M +NIV+ N +I+GY L D
Sbjct: 279 GSALIDMYAKCGNMDDARLFFDTM-MMKNIVAWNEMIHGYAQNGLGD------------- 324
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+A+ELF+ M+ PD ++VL+ CS S L +
Sbjct: 325 ------------------KAVELFEYMLTTEQKPDAVTFIAVLTGCSH-SGLVDKAMAFF 365
Query: 242 FILQNN--ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLA---N 295
++N+ I A T LID + G E +K CK D + W ++ N
Sbjct: 366 NSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHN 425
Query: 296 YGLGNEALRVFYQMERKGIKP 316
LG A ++++ K P
Sbjct: 426 AELGKCAAEHLFRIDPKNPSP 446
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
D V +LIDMY+KC ++EA+ F +V+W +I G G +A+ V M+
Sbjct: 7 DQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQ 66
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370
G +PNE T+ ++LA+C + + +F ++ +P++ + L+ +
Sbjct: 67 EAGFEPNEVTYSNLLASCIKARDVHSARAMFDKIS-----RPSVTTWNTLLSGYCQEEQH 121
Query: 371 YQAEEFIKIMPAED---KFISYKALLSACITYSEFDLGKKV 408
E + M ++ + +LS+C D G++V
Sbjct: 122 QDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQV 162
>gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 681
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 147/454 (32%), Positives = 239/454 (52%), Gaps = 1/454 (0%)
Query: 8 HVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGE 67
+V K + D + ++LI Y +DA +F WN+L+S Y + + +
Sbjct: 229 YVLKMMDEVDDFSLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMK 288
Query: 68 VLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLL 127
L ++ + D T+ ++ SAC+ Y K +H Y KVGL + + +A +
Sbjct: 289 AFALVNEMKNNRVQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFID 348
Query: 128 MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRS 187
Y+KC+ ++A +LF E+ + ++ LN +I Y + + A+ +F+ + K ++ W S
Sbjct: 349 AYSKCRNPNDACKLFSELKAYDTVL-LNSMITAYCNCGRIRDAKNIFETMPSKSLISWNS 407
Query: 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247
++ G + P EAL++F KM + D + SV+SAC+ +S+L+ G V +
Sbjct: 408 IIVGLAQNAYPLEALDVFGKMNKLDLRMDRFSLASVISACACISSLELGEQVFARAIITG 467
Query: 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307
+ D V T+L+D Y KCG +E F D V+W +M+ G A G G E L +F
Sbjct: 468 LESDQAVSTSLVDFYCKCGFIENGRKLFDSMIKTDEVSWNSMLMGYATNGYGLETLTLFN 527
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367
+M++ G++P + TF VL+AC H GL+ EG + F M Y + P IEH+ C+VDL +RA
Sbjct: 528 EMKQAGLRPTDITFTGVLSACDHCGLVEEGRKWFNIMKYDYHIDPGIEHYSCMVDLFARA 587
Query: 368 GLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427
G L +A ++ MP E + ++L C+ + + DLGKKVA +++L +S AYV LS
Sbjct: 588 GCLKEALNLVEHMPFEADCSMWSSVLRGCVAHGDKDLGKKVAQQIIQLNPESSSAYVQLS 647
Query: 428 NFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
+A G W A R+ M E Q +K PG S D
Sbjct: 648 GIFATSGDWESSALVRKIMTEKQVKKHPGFSWAD 681
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/414 (26%), Positives = 184/414 (44%), Gaps = 47/414 (11%)
Query: 19 YVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL--- 75
Y N +I + + A+ LF++MP R+ +WN+++ Y + E + LFK+L
Sbjct: 105 YSWNVVISGFAKAGELDVAKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSN 164
Query: 76 IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135
E D L + ACA L + YGK VH +E + ++L+ +YAKC +
Sbjct: 165 PLEKSCGDTFVLASVIGACADLGAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHL 224
Query: 136 DEA---LRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGC 192
D A L++ DE+ + SL+ LI GY + + A +F + V+W S++ G
Sbjct: 225 DTANYVLKMMDEV----DDFSLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGY 280
Query: 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252
V + +A L +M + V D + +LSACSS N QY + +H ++ + +
Sbjct: 281 VNNHEEMKAFALVNEMKNNRVQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSV 340
Query: 253 FVKTALIDMYSK-------------------------------CGSLEEALVTFYKTDCK 281
V +A ID YSK CG + +A F K
Sbjct: 341 IVASAFIDAYSKCRNPNDACKLFSELKAYDTVLLNSMITAYCNCGRIRDAKNIFETMPSK 400
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
+++W ++I GLA EAL VF +M + ++ + + SV++AC + G Q+F
Sbjct: 401 SLISWNSIIVGLAQNAYPLEALDVFGKMNKLDLRMDRFSLASVISACACISSLELGEQVF 460
Query: 342 RR--MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
R + G+ Q LVD + G + + M D+ +S+ ++L
Sbjct: 461 ARAIITGLESDQAV---STSLVDFYCKCGFIENGRKLFDSMIKTDE-VSWNSML 510
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 35/244 (14%)
Query: 98 EKLHYGKTVHCYATKVGL-EYMLNMENALLLMYAKCK-EMDEALRLFDEMGSR------- 148
+H GK +H K GL +++ N LL MYA+C M +A LFDEM R
Sbjct: 19 SSIHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTDAHNLFDEMPERNCFSWNT 78
Query: 149 -----------------------RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+N S N++I+G+ +D+A+++F+E+ ++ V W
Sbjct: 79 MIEGYMRVGDKERSLKLFDLMPQKNDYSWNVVISGFAKAGELDVAKKLFNEMPRRNGVAW 138
Query: 186 RSMMHGCVKAKQPEEALELFKKMID---EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
SM+HG + EA+ LFK++ E D V+ SV+ AC+ L ++YG+ VH
Sbjct: 139 NSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACADLGAIEYGKQVHAR 198
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
IL +++ D+ + ++LI++Y+KCG L+ A D D + + +I G AN G ++A
Sbjct: 199 ILMDDVELDSVLISSLINLYAKCGHLDTANYVLKMMDEVDDFSLSALIMGYANCGRMSDA 258
Query: 303 LRVF 306
+R+F
Sbjct: 259 VRIF 262
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 9/183 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + A T L+SD V SL+ FY + + R LFD M D SWN+++ Y
Sbjct: 455 LGEQVFARAIITGLESDQAVSTSLVDFYCKCGFIENGRKLFDSMIKTDEVSWNSMLMGYA 514
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-----HCYATKVGL 115
E L LF ++ G+ IT + SAC + G+ + Y G+
Sbjct: 515 TNGYGLETLTLFNEMKQAGLRPTDITFTGVLSACDHCGLVEEGRKWFNIMKYDYHIDPGI 574
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
E+ + ++ ++A+ + EAL L + M + + ++ G + DL ++V
Sbjct: 575 EHY----SCMVDLFARAGCLKEALNLVEHMPFEADCSMWSSVLRGCVAHGDKDLGKKVAQ 630
Query: 176 EIV 178
+I+
Sbjct: 631 QII 633
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 24/228 (10%)
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNN-ITQDAFVKTALIDMYSKCG-SLEEALVTFYK 277
+ +L + ++ S++ G+ +H L+ I + L+ MY++CG ++ +A F +
Sbjct: 8 LARLLQSLNTHSSIHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTDAHNLFDE 67
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
++ +W TMIEG G +L++F M +K N+ ++ V++ +G +
Sbjct: 68 MPERNCFSWNTMIEGYMRVGDKERSLKLFDLMPQK----NDYSWNVVISGFAKAGELDVA 123
Query: 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM---PAE----DKFISYK 390
+LF M V + ++ +R G +A K + P E D F+
Sbjct: 124 KKLFNEMPRRNGVA-----WNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFV-LA 177
Query: 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS---NFYALEGH 435
+++ AC + GK+V + L + VL+S N YA GH
Sbjct: 178 SVIGACADLGAIEYGKQVHARI--LMDDVELDSVLISSLINLYAKCGH 223
>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
Length = 518
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 135/427 (31%), Positives = 229/427 (53%), Gaps = 32/427 (7%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96
AR +FDK+ V +WNTL+S Y + + LF+++ + + D+ TL ++ S+C++
Sbjct: 77 ARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSK 136
Query: 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNI 156
L L +G+ VH + + L + + + L+ MY+KC +
Sbjct: 137 LGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQ---------------------- 174
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
+ +AR +F+++ ++D+V W S++ G +EA + FK+M + G+ P
Sbjct: 175 ----------IGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPT 224
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
E S++++CS LS++ +GR +H ++++ Q+ +V +ALIDMY+KCG++++A + F
Sbjct: 225 ESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFD 284
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
K++V W MI G A GLG++A+ +F M KP+ TF++VL C HSGL+ +
Sbjct: 285 TMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDK 344
Query: 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
F M Y + P EH+ CL+D L RAG + E I MP +D I ++ LL+AC
Sbjct: 345 AMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAAC 404
Query: 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPG 456
+ + +LGK A ++ ++ ++ YVLLSN YA G + + R M K G
Sbjct: 405 VVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRG 464
Query: 457 NSIIDLK 463
S ID K
Sbjct: 465 YSWIDQK 471
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 153/320 (47%), Gaps = 51/320 (15%)
Query: 128 MYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY-------------------------- 161
MY KC EMDEA+++F+ + S IVS NILI G+
Sbjct: 1 MYTKCVEMDEAVKVFESLPSV-TIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEV 59
Query: 162 ---------IDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212
I V AR +FD+I + W +++ G + +Q ++ +ELF++M +
Sbjct: 60 TYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQN 119
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVH----RFILQNNITQDAFVKTALIDMYSKCGSL 268
V PD + +LS+CS L L +GR VH RF+L N D FV + L+DMYSKCG +
Sbjct: 120 VQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHN----DMFVASGLVDMYSKCGQI 175
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
A F K +DVV W ++I GL + L EA F QM GI P E+++ S++ +C
Sbjct: 176 GIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSC 235
Query: 329 RHSGLITEGCQLFRR-MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
I G Q+ + M Y + L+D+ ++ G + A F M ++ +
Sbjct: 236 SRLSSIPHGRQIHAQVMKDGYDQNVYVGS--ALIDMYAKCGNMDDARLFFDTMMMKN-IV 292
Query: 388 SYKALLSACITYSEFDLGKK 407
++ ++ Y++ LG K
Sbjct: 293 AWNEMIHG---YAQNGLGDK 309
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 145/321 (45%), Gaps = 39/321 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H+ + L +D++V + L+ Y + AR +F+KM RDV WN+++S
Sbjct: 143 GRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTI 202
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S + E FKQ+ GI+ + + + ++C+RL + +G+ +H K G + + +
Sbjct: 203 HSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYV 262
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+AL+ MYAKC MD+A FD M +NIV+ N +I+GY L D
Sbjct: 263 GSALIDMYAKCGNMDDARLFFDTM-MMKNIVAWNEMIHGYAQNGLGD------------- 308
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+A+ELF+ M+ PD ++VL+ CS S L +
Sbjct: 309 ------------------KAVELFEYMLTTEQKPDAVTFIAVLTGCSH-SGLVDKAMAFF 349
Query: 242 FILQNN--ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLA---N 295
++N+ I A T LID + G E +K CK D + W ++ N
Sbjct: 350 NSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHN 409
Query: 296 YGLGNEALRVFYQMERKGIKP 316
LG A ++++ K P
Sbjct: 410 AELGKCAAEHLFRIDPKNPSP 430
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 156/485 (32%), Positives = 251/485 (51%), Gaps = 33/485 (6%)
Query: 7 AHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSG 66
A + KT+L+ D + N I A +M +V +N L + S
Sbjct: 794 AAMIKTSLNQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPI 853
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
L L+ +++ + + T L A + + +G+++ + K G + + ++ L+
Sbjct: 854 RSLELYVRMLRDSVSPSSYTYSSLVKASSFASR--FGESLQAHIWKFGFGFHVKIQTTLI 911
Query: 127 LMYAKCKEMDEALRLFDEMGSR------------------------------RNIVSLNI 156
Y+ + EA ++FDEM R +N + N
Sbjct: 912 DFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNC 971
Query: 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216
LINGY+ + ++ A +F+++ KDI+ W +M+ G + K+ EA+ +F KM++EG+ PD
Sbjct: 972 LINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPD 1031
Query: 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276
E M +V+SAC+ L L+ G+ VH + LQN D ++ +AL+DMYSKCGSLE AL+ F+
Sbjct: 1032 EVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFF 1091
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
K++ W ++IEGLA +G EAL++F +ME + +KPN TFVSV AC H+GL+ E
Sbjct: 1092 NLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDE 1151
Query: 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396
G +++R M Y + +EH+ +V L S+AGL+Y+A E I M E + + ALL C
Sbjct: 1152 GRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGC 1211
Query: 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK-P 455
+ + + N +M L + Y LL + YA + W +VAE R M+EL K P
Sbjct: 1212 RIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICP 1271
Query: 456 GNSII 460
G S I
Sbjct: 1272 GTSSI 1276
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 143/355 (40%), Gaps = 96/355 (27%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ L AH+ K + + +LI FY +AR +FD+MP RD +W T++S Y
Sbjct: 888 GESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRR 947
Query: 60 -----------NDFSDSGEV----LI--------------LFKQLIFEGIVA-------- 82
N S+ E LI LF Q+ + I++
Sbjct: 948 VLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGY 1007
Query: 83 -----------------------DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
D++T+ + SACA L L GK VH Y + G +
Sbjct: 1008 SQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDV 1067
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ +AL+ MY+KC ++ AL VF +
Sbjct: 1068 YIGSALVDMYSKCGSLERALL--------------------------------VFFNLPK 1095
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K++ W S++ G +EAL++F KM E V P+ VSV +AC+ + GR +
Sbjct: 1096 KNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRI 1155
Query: 240 HRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEG 292
+R ++ + +I + ++ ++SK G + EAL + + + V W +++G
Sbjct: 1156 YRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDG 1210
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 82/164 (50%), Gaps = 7/164 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + + D+Y+G++L+ Y + A ++F +P +++ WN+++
Sbjct: 1050 IGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLA 1109
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML- 119
+ E L +F ++ E + + +T V +F+AC + G+ + Y + + +Y +
Sbjct: 1110 AHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRI--YRSMID-DYSIV 1166
Query: 120 -NMEN--ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160
N+E+ ++ +++K + EAL L M N V L++G
Sbjct: 1167 SNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDG 1210
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 160/458 (34%), Positives = 252/458 (55%), Gaps = 13/458 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP-FRDVGSWNTLMSIYN 60
G +HA + +D++V N+L+ YG + R +F DV SWNT++ Y
Sbjct: 114 GAQVHAQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYV 173
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ +F ++ V+ T+V ++A L+ + + +G +
Sbjct: 174 KCGEMESAKRVFDEMPRRNGVSWS-TMVGGYAAAGELD---VAREMFDRMPAIGRNVV-- 227
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
N+++ +A+ + A ++FDEM RN+VS N ++ GY +D ARE+FD + +K
Sbjct: 228 TWNSMVTGFARHGLLPLARKMFDEM-PVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEK 286
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W M+ G +A + ++ LELF+ M E V P+E MVSVLSAC++L+ L+ GR V
Sbjct: 287 DVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWV 346
Query: 240 HRFILQNN--ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
H FI ++ + + + ALIDMY+KCG + A+ F D K+V W +I LA G
Sbjct: 347 HAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNG 406
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+++ F QM+R G KPN+ TFV VL AC H GL+ EG + F+ M VQP ++H+
Sbjct: 407 NARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHY 466
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM--MKL 415
C+VD+L RAGLL +AEE I+ MP + + ALL AC + FD+ ++V + + + L
Sbjct: 467 GCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNL 526
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRK 453
Q +VL+S+ YA G W +V EAR+ ++ RK
Sbjct: 527 NAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 564
>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 154/452 (34%), Positives = 242/452 (53%), Gaps = 17/452 (3%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ D NS+I YG AR LFD+M R+V SW +++ Y D E +LF++
Sbjct: 165 ERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLEARVLFER 224
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM----LNMENALLLMYA 130
+ + + + K+ + S G V A + E M + N ++
Sbjct: 225 MPEKDLASWKVMVSAYMSV---------GNLV---AARNLFELMPIHDVGTWNLMISGCC 272
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190
K EMD A FD M RN+ S ++I+GYI + VD AR VFD++ +K++V W +M+
Sbjct: 273 KAGEMDAAKEFFDRM-QERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIG 331
Query: 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
G K P +L+L+K ++G+ PDE + ++SACS L V + ++
Sbjct: 332 GYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAESVICDFVGPSLFP 391
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
+ V T+LIDMY+KCG++E A+ F D KD+ ++T+I AN+GL +A+ +F +M+
Sbjct: 392 NLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQ 451
Query: 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370
+ IKP+ F+ VL AC H GL+ EG +LFR+M Y +QP+ +H+ C+VD+L RAG L
Sbjct: 452 KANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCL 511
Query: 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430
+A I MP + ALLSAC + L + A + ++ + YVLL N Y
Sbjct: 512 EEAHSLICSMPVAPNATVWGALLSACRVHLNVQLAEAAATELFQIEPNNSGNYVLLFNIY 571
Query: 431 ALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A G W + ++ R ++E + RK G+S I+L
Sbjct: 572 ADAGQWDDFSKVRAMIRENRVRKNRGSSWIEL 603
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 102/410 (24%), Positives = 196/410 (47%), Gaps = 38/410 (9%)
Query: 5 LHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+HAH ++ + SD+ + N L+ Y + + A LFD+ P + W L+ + +
Sbjct: 22 IHAHLLISGSIASSDLTL-NKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTEN 80
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ F ++ E IV T+ + A +RL ++ G V+ A + G E+ L ++
Sbjct: 81 NQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVK 140
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N ++ ++ +C EM A ++FDEM R+ VS N +I GY + VD+AR++FD + ++++
Sbjct: 141 NVMIELFMRCGEMGSARQMFDEM-EERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNV 199
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS-------------------- 222
+ W SM+ G VKA EA LF++M ++ + +VMVS
Sbjct: 200 ISWTSMIQGYVKAGDLLEARVLFERMPEKDLA-SWKVMVSAYMSVGNLVAARNLFELMPI 258
Query: 223 --------VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
++S C + + + + N+ + ID Y K G ++ A
Sbjct: 259 HDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMI----IDGYIKVGDVDAARSV 314
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F + K++V W+TMI G A G +L+++ + +GIKP+E + +++AC G+
Sbjct: 315 FDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVP 374
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
+ G + P ++ L+D+ ++ G + +A + +++ +D
Sbjct: 375 DTAESVICDFVGP-SLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKD 423
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 10/263 (3%)
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
++LN L+ Y V A ++FDE + + LW +++HG + Q E A F KM E
Sbjct: 37 LTLNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRE 96
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
+ P + SVL A S L ++ G LV+ ++ D VK +I+++ +CG + A
Sbjct: 97 NIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSA 156
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
F + + +D V+W +MI G N G + A ++F +ME + N ++ S++ +
Sbjct: 157 RQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEER----NVISWTSMIQGYVKA 212
Query: 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKA 391
G + E LF RM + + + +V G L A ++MP D ++
Sbjct: 213 GDLLEARVLFERMP-----EKDLASWKVMVSAYMSVGNLVAARNLFELMPIHD-VGTWNL 266
Query: 392 LLSACITYSEFDLGKKVANNMMK 414
++S C E D K+ + M +
Sbjct: 267 MISGCCKAGEMDAAKEFFDRMQE 289
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 12/201 (5%)
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
+ ++ +L C SL L +H ++ +I L+ +YSK G++ A
Sbjct: 2 NHSLISKLLKQCRSLKTLT---TIHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKL 58
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F +T + WT +I G A F +M R+ I P T SVL A G I
Sbjct: 59 FDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRI 118
Query: 335 TEGCQLFR---RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKA 391
+G ++ R G Y +++ +++L R G + A + M D +S+ +
Sbjct: 119 KDGDLVYGLAVRCG--YEFDLVVKN--VMIELFMRCGEMGSARQMFDEMEERDA-VSWNS 173
Query: 392 LLSACITYSEFDLGKKVANNM 412
+++ D+ +K+ + M
Sbjct: 174 MITGYGNNGRVDIARKLFDRM 194
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 147/494 (29%), Positives = 252/494 (51%), Gaps = 63/494 (12%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS--- 57
+G+ ++ + K SD++VG+ L+ Y ++ L DA+ FD+MP R+V NT+++
Sbjct: 156 LGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLM 215
Query: 58 -------------------------IYNDFSDSG---EVLILFKQLIFEGIVADKITLVI 89
+ +G E L +F+++ G D+ T
Sbjct: 216 RCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGS 275
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +AC L L GK +H Y + + + + +AL+ MY+KC+ + A
Sbjct: 276 VLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSA----------- 324
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
VF + K+++ W +M+ G + EEA+++F +M
Sbjct: 325 ---------------------ETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQ 363
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
GV PD+ + SV+S+C++L++L+ G H L + + V ALI +Y KCGS E
Sbjct: 364 RNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTE 423
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+ F + + +D V+WT ++ G A +G NE + +F +M G+KP+ TF+ VL+AC
Sbjct: 424 NSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACS 483
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISY 389
+GL+ +G Q F M + + P ++H C++DLL RAG L +A FI MP + +
Sbjct: 484 RAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGW 543
Query: 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449
LLS+C + + ++GK A++++ L Q+ +YVLLS+ YA +G W +VA+ RR M++
Sbjct: 544 ATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDK 603
Query: 450 QTRKKPGNSIIDLK 463
+ RK+PG S I K
Sbjct: 604 RVRKEPGYSWIKYK 617
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 211/396 (53%), Gaps = 7/396 (1%)
Query: 8 HVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGE 67
HV +++ N+++ Y ++ L + + +F+ MPFRD SWN +S Y ++ +
Sbjct: 61 HVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSD 120
Query: 68 VLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
+ ++K ++ + + ++IT + C++ + G+ ++ K G + + + L+
Sbjct: 121 AVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLV 180
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
MY K + +A R FDEM RN+V N +I G + +++ ++ +F + ++D + W
Sbjct: 181 DMYTKLGLIYDAKRYFDEM-PERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWT 239
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
M+ G ++ EAL++F++M G D+ SVL+AC SL L G+ +H ++++
Sbjct: 240 IMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRT 299
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ + FV +AL+DMYSKC S++ A F + K+V++WT M+ G G EA+++F
Sbjct: 300 DHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIF 359
Query: 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366
++M+R G++P++ T SV+++C + + EG Q R V + I L+ L +
Sbjct: 360 FEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCR-ALVSGLISFITVSNALITLYGK 418
Query: 367 AGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402
G + M D+ +S+ ALL+ Y++F
Sbjct: 419 CGSTENSHRLFTEMNIRDE-VSWTALLAG---YAQF 450
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 145/338 (42%), Gaps = 39/338 (11%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L C + K +HC K + + N L+ Y K + A +FD + +
Sbjct: 11 LLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHI-PQP 69
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N+ S N +++ Y + L+ +++F+ + +D V W + G +A+ ++K M+
Sbjct: 70 NLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLML 129
Query: 210 -DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK---- 264
D + + ++L CS + GR ++ IL+ D FV + L+DMY+K
Sbjct: 130 KDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLI 189
Query: 265 ---------------------------CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
CG +EE+ F +D ++WT MI GL G
Sbjct: 190 YDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNG 249
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
L EAL +F +M G ++ TF SVL AC + EG Q+ V R F
Sbjct: 250 LEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAY---VIRTDHKDNVF 306
Query: 358 V--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
V LVD+ S+ + AE K MP ++ IS+ A+L
Sbjct: 307 VGSALVDMYSKCRSIKSAETVFKRMPQKN-VISWTAML 343
>gi|326530063|dbj|BAK08311.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 147/385 (38%), Positives = 224/385 (58%), Gaps = 9/385 (2%)
Query: 85 ITLVILFSACARLEKLHYGKTVHCYATKVGL-EYMLNMENALLLMYAKCKEMDEALRLFD 143
+T L A ARL ++H + ++GL + L + N+L+ MYA C D A RLFD
Sbjct: 61 LTFPFLGRAAARLASPRLALSLHAHPLRLGLLPWDLYVANSLVHMYAACALPDLARRLFD 120
Query: 144 EMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203
E+ R N+VS N L++GY + AR VF+ + +D+V W +M+ GCVK + EAL
Sbjct: 121 EI-PRPNLVSWNALLDGYAKCRDLLSARCVFNRMPQRDVVSWSAMIDGCVKCGEHREALA 179
Query: 204 LFKKM----IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
LF+ M GV ++ MVSVL AC+ L +L GR +HR++ ++ + + T+L+
Sbjct: 180 LFEMMEAAGAGNGVRANDVTMVSVLGACAHLGDLGRGRQMHRYLQEHGFLLNLRLATSLV 239
Query: 260 DMYSKCGSLEEALVTF--YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
DMY+KCG++ EAL F DV+ W +I GLA +GL E++ +F +M+ G+ P+
Sbjct: 240 DMYAKCGAISEALEVFRAVPVTTTDVLIWNAVIGGLAVHGLSMESVEIFQEMQNSGVVPD 299
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI 377
E T++ +L+AC H GL+ E +LFR + V ++P +EH+ CLVD+L RAG L +A +
Sbjct: 300 EITYLVLLSACVHGGLVGEAWRLFRSLE-VQGLRPHVEHYACLVDVLGRAGHLEEAYGVV 358
Query: 378 KIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWT 437
K MP E ALL+AC + +LG+ V +++L Y+ LSN YA+ W
Sbjct: 359 KSMPMEPNVSVLGALLNACHLHGWVELGEVVGRQLVQLQPDHDGRYIGLSNIYAIARRWQ 418
Query: 438 EVAEARRNMKELQTRKKPGNSIIDL 462
E +AR+ M+E +K PG S ID+
Sbjct: 419 EAKKARKVMEERGVKKIPGFSEIDV 443
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 125/303 (41%), Gaps = 66/303 (21%)
Query: 5 LHAHVTKTAL-DSDIYVGNSLIHFYGRMAL------------------------------ 33
LHAH + L D+YV NSL+H Y AL
Sbjct: 82 LHAHPLRLGLLPWDLYVANSLVHMYAACALPDLARRLFDEIPRPNLVSWNALLDGYAKCR 141
Query: 34 -FTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL----IFEGIVADKITLV 88
AR +F++MP RDV SW+ ++ + E L LF+ + G+ A+ +T+V
Sbjct: 142 DLLSARCVFNRMPQRDVVSWSAMIDGCVKCGEHREALALFEMMEAAGAGNGVRANDVTMV 201
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ ACA L L G+ +H Y + G L + +L+ MYAKC + EAL +F +
Sbjct: 202 SVLGACAHLGDLGRGRQMHRYLQEHGFLLNLRLATSLVDMYAKCGAISEALEVFRAV--- 258
Query: 149 RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
+ D+++W +++ G E++E+F++M
Sbjct: 259 ---------------------------PVTTTDVLIWNAVIGGLAVHGLSMESVEIFQEM 291
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+ GV PDE + +LSAC + + R + + L+D+ + G L
Sbjct: 292 QNSGVVPDEITYLVLLSACVHGGLVGEAWRLFRSLEVQGLRPHVEHYACLVDVLGRAGHL 351
Query: 269 EEA 271
EEA
Sbjct: 352 EEA 354
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 160/458 (34%), Positives = 252/458 (55%), Gaps = 13/458 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP-FRDVGSWNTLMSIYN 60
G +HA + +D++V N+L+ YG + R +F DV SWNT++ Y
Sbjct: 114 GAQVHAQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYV 173
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ +F ++ V+ T+V ++A L+ + + +G +
Sbjct: 174 KCGEMESAKRVFDEMPRRNGVSWS-TMVGGYAAAGELD---VAREMFDRMPAIGRNVV-- 227
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
N+++ +A+ + A ++FDEM RN+VS N ++ GY +D ARE+FD + +K
Sbjct: 228 TWNSMVTGFARHGLLPLARKMFDEM-PVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEK 286
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W M+ G +A + ++ LELF+ M E V P+E MVSVLSAC++L+ L+ GR V
Sbjct: 287 DVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWV 346
Query: 240 HRFILQNN--ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
H FI ++ + + + ALIDMY+KCG + A+ F D K+V W +I LA G
Sbjct: 347 HAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNG 406
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+++ F QM+R G KPN+ TFV VL AC H GL+ EG + F+ M VQP ++H+
Sbjct: 407 NAQDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHY 466
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM--MKL 415
C+VD+L RAGLL +AEE I+ MP + + ALL AC + FD+ ++V + + + L
Sbjct: 467 GCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNL 526
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRK 453
Q +VL+S+ YA G W +V EAR+ ++ RK
Sbjct: 527 NAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 564
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,729,491,929
Number of Sequences: 23463169
Number of extensions: 265755759
Number of successful extensions: 788521
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8583
Number of HSP's successfully gapped in prelim test: 2708
Number of HSP's that attempted gapping in prelim test: 627154
Number of HSP's gapped (non-prelim): 59166
length of query: 465
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 319
effective length of database: 8,933,572,693
effective search space: 2849809689067
effective search space used: 2849809689067
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 79 (35.0 bits)