BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012360
         (465 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CU2|A Chain A, Crystal Structure Of Mannose-1-Phosphate
           Geranyltransferase From Thermus Thermophilus Hb8
          Length = 337

 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 17  DIYVGNSLIHF-YGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLIL 71
           ++Y G   I   YG M      RV+  + P+ DVG+W  L  +++   D  E ++L
Sbjct: 223 EVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFS--QDPHENVVL 276


>pdb|1CEC|A Chain A, A Common Protein Fold And Similar Active Site In Two
           Distinct Families Of Beta-Glycanases
          Length = 343

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 141 LFDEMGSRRNIVSL-NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195
           LF++   ++  V +   L   YI+ E   +A E+ +E+V+ D   W  +M  C+KA
Sbjct: 105 LFEDPNQQKRFVDIWRFLAKRYIN-EREHIAFELLNEVVEPDSTRWNKLMLECIKA 159


>pdb|1CEN|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
           Complexed With Cellohexaose
 pdb|1CEO|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
          Length = 343

 Score = 28.5 bits (62), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 141 LFDEMGSRRNIVSL-NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195
           LF++   ++  V +   L   YI+ E   +A E+ +++V+ D   W  +M  C+KA
Sbjct: 105 LFEDPNQQKRFVDIWRFLAKRYIN-EREHIAFELLNQVVEPDSTRWNKLMLECIKA 159


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,955,279
Number of Sequences: 62578
Number of extensions: 515416
Number of successful extensions: 1259
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1257
Number of HSP's gapped (non-prelim): 6
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)