BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012360
(465 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 332 bits (852), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/464 (36%), Positives = 277/464 (59%), Gaps = 1/464 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH HV K L S++YV N+L+ Y L AR +FD+ DV SWN ++S YN
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNR 213
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + L ++ + +TL+++ SAC++++ K VH Y ++ E L +
Sbjct: 214 MKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRL 273
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENAL+ YA C EMD A+R+F M +R +++S ++ GY++ + LAR FD++ +D
Sbjct: 274 ENALVNAYAACGEMDIAVRIFRSMKAR-DVISWTSIVKGYVERGNLKLARTYFDQMPVRD 332
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W M+ G ++A E+LE+F++M G+ PDE MVSVL+AC+ L +L+ G +
Sbjct: 333 RISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKT 392
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +N I D V ALIDMY KCG E+A F+ D +D TWT M+ GLAN G G E
Sbjct: 393 YIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQE 452
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A++VF+QM+ I+P++ T++ VL+AC HSG++ + + F +M +R++P++ H+ C+V
Sbjct: 453 AIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMV 512
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L RAGL+ +A E ++ MP I + ALL A +++ + + A +++L +
Sbjct: 513 DMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGA 572
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
Y LL N YA W ++ E RR + ++ +K PG S+I++ +
Sbjct: 573 VYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGF 616
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 169/379 (44%), Gaps = 65/379 (17%)
Query: 40 LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR-LE 98
LF K+P DV WN ++ ++ GE + L+ ++ EG+ D T L + R
Sbjct: 90 LFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGG 149
Query: 99 KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
L GK +HC+ K GL L ++NAL+ MY+ C MD A +FD + ++ S N++I
Sbjct: 150 ALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRR-CKEDVFSWNLMI 208
Query: 159 NGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE 218
+GY M K+ EE++EL +M V+P
Sbjct: 209 SGYNRM-------------------------------KEYEESIELLVEMERNLVSPTSV 237
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
++ VLSACS + + + VH ++ + ++ AL++ Y+ CG ++ A+ F
Sbjct: 238 TLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSM 297
Query: 279 DCKDVVTWTT-------------------------------MIEGLANYGLGNEALRVFY 307
+DV++WT+ MI+G G NE+L +F
Sbjct: 298 KARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFR 357
Query: 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367
+M+ G+ P+E T VSVL AC H G + G + + +++ + L+D+ +
Sbjct: 358 EMQSAGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVVGNALIDMYFKC 416
Query: 368 GLLYQAEEFIKIMPAEDKF 386
G +A++ M DKF
Sbjct: 417 GCSEKAQKVFHDMDQRDKF 435
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 128/282 (45%), Gaps = 6/282 (2%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226
V A ++F +I + D+V+W +M+ G K E + L+ M+ EGVTPD +L+
Sbjct: 84 VSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNG 143
Query: 227 CSSLSN-LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
L G+ +H +++ + + +V+ AL+ MYS CG ++ A F + +DV +
Sbjct: 144 LKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFS 203
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
W MI G E++ + +MER + P T + VL+AC + C+
Sbjct: 204 WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVK-DKDLCKRVHEYV 262
Query: 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
+ +P++ LV+ + G + A + M A D IS+ +++ + L
Sbjct: 263 SECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARD-VISWTSIVKGYVERGNLKLA 321
Query: 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
+ + M + ++ ++ + Y G + E E R M+
Sbjct: 322 RTYFDQMPV---RDRISWTIMIDGYLRAGCFNESLEIFREMQ 360
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Query: 196 KQP-EEALELFKKM----IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250
K P L +FK + I E ++ D +S+L C + Q+ +L + I +
Sbjct: 8 KSPFNSELSIFKALLMSTITESISNDYSRFISILGVCKTTD--QFKQLHSQSITRGVAPN 65
Query: 251 DAFVKTALIDMYSKCGS-LEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQM 309
F K + S+ G + A F K DVV W MI+G + E +R++ M
Sbjct: 66 PTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNM 125
Query: 310 ERKGIKPNEATFVSVLAACRHSG 332
++G+ P+ TF +L + G
Sbjct: 126 LKEGVTPDSHTFPFLLNGLKRDG 148
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ + ++ K + +D+ VGN+LI Y + A+ +F M RD +W ++
Sbjct: 386 IGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLA 445
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSAC 94
+ E + +F Q+ I D IT + + SAC
Sbjct: 446 NNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSAC 479
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 323 bits (827), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 166/462 (35%), Positives = 273/462 (59%), Gaps = 1/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G + HV K L+ +V N+ IH + +AR +FD+ P RD+ SWN L++ Y
Sbjct: 174 LGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYK 233
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ + + ++K + EG+ D +T++ L S+C+ L L+ GK + Y + GL +
Sbjct: 234 KIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIP 293
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ M++KC ++ EA R+FD + +R IVS +I+GY L+D++R++FD++ +K
Sbjct: 294 LVNALMDMFSKCGDIHEARRIFDNL-EKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEK 352
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VLW +M+ G V+AK+ ++AL LF++M PDE M+ LSACS L L G +H
Sbjct: 353 DVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIH 412
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
R+I + +++ + + T+L+DMY+KCG++ EAL F+ ++ +T+T +I GLA +G +
Sbjct: 413 RYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDAS 472
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ F +M GI P+E TF+ +L+AC H G+I G F +M + + P ++H+ +
Sbjct: 473 TAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIM 532
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A+ ++ MP E + ALL C + +LG+K A +++L
Sbjct: 533 VDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDS 592
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL Y W + ARR M E K PG S I++
Sbjct: 593 GIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEV 634
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/403 (25%), Positives = 180/403 (44%), Gaps = 68/403 (16%)
Query: 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV---ADKITLVILFSACARLEKLHYGK 104
++ SWN + +++ + E +L+KQ++ G D T +LF CA L G
Sbjct: 117 NIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGH 176
Query: 105 TVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM 164
+ + K+ LE + ++ NA + M+A C +M+ A ++FDE R++VS N LINGY
Sbjct: 177 MILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDE-SPVRDLVSWNCLINGY--- 232
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
K + E+A+ ++K M EGV PD+ M+ ++
Sbjct: 233 ----------------------------KKIGEAEKAIYVYKLMESEGVKPDDVTMIGLV 264
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
S+CS L +L G+ + ++ +N + + AL+DM+SKCG + EA F + + +V
Sbjct: 265 SSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIV 324
Query: 285 TWTTMIEGLANYGL-------------------------------GNEALRVFYQMERKG 313
+WTTMI G A GL G +AL +F +M+
Sbjct: 325 SWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSN 384
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
KP+E T + L+AC G + G + R + Y + + LVD+ ++ G + +A
Sbjct: 385 TKPDEITMIHCLSACSQLGALDVGIWIHRYIEK-YSLSLNVALGTSLVDMYAKCGNISEA 443
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ + ++Y A++ + + N M+ G
Sbjct: 444 LSVFHGIQTRNS-LTYTAIIGGLALHGDASTAISYFNEMIDAG 485
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 140/307 (45%), Gaps = 24/307 (7%)
Query: 121 MENALLLMYAKCK----------EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLA 170
+ N LL + KCK +M + D S R I + + Y+D +
Sbjct: 52 LHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSV---- 107
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT---PDEEVMVSVLSAC 227
++ I + +I W + G +++ P+E+ L+K+M+ G PD + C
Sbjct: 108 -KILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVC 166
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+ L G ++ +L+ + + V A I M++ CG +E A F ++ +D+V+W
Sbjct: 167 ADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWN 226
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR--RMG 345
+I G G +A+ V+ ME +G+KP++ T + ++++C G + G + + +
Sbjct: 227 CLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKEN 286
Query: 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
G+ P + L+D+ S+ G +++A + + +S+ ++S D+
Sbjct: 287 GLRMTIPLVN---ALMDMFSKCGDIHEARRIFDNL-EKRTIVSWTTMISGYARCGLLDVS 342
Query: 406 KKVANNM 412
+K+ ++M
Sbjct: 343 RKLFDDM 349
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 322 bits (824), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 167/463 (36%), Positives = 273/463 (58%), Gaps = 2/463 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH K+A+ SD++V NSLIH Y A +F + +DV SWN++++ +
Sbjct: 149 LGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFV 208
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L LFK++ E + A +T+V + SACA++ L +G+ V Y + + L
Sbjct: 209 QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLT 268
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NA+L MY KC +++A RLFD M + N V+ +++GY E + AREV + + K
Sbjct: 269 LANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAISEDYEAAREVLNSMPQK 327
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
DIV W +++ + +P EAL +F ++ + + + ++ +VS LSAC+ + L+ GR +
Sbjct: 328 DIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWI 387
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I ++ I + V +ALI MYSKCG LE++ F + +DV W+ MI GLA +G G
Sbjct: 388 HSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCG 447
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
NEA+ +FY+M+ +KPN TF +V AC H+GL+ E LF +M Y + P +H+ C
Sbjct: 448 NEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYAC 507
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VD+L R+G L +A +FI+ MP + ALL AC ++ +L + +++L ++
Sbjct: 508 IVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRN 567
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A+VLLSN YA G W V+E R++M+ +K+PG S I++
Sbjct: 568 DGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEI 610
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 190/420 (45%), Gaps = 68/420 (16%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYG--RMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K H H+ +T SD Y + L A AR +FD++P + +WNTL+ Y
Sbjct: 47 KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYA 106
Query: 61 DFSDSGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
D + F ++ E +K T L A A + L G+++H A K + +
Sbjct: 107 SGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDV 166
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ N+L+ Y C ++D A ++F + +++VS N +ING+
Sbjct: 167 FVANSLIHCYFSCGDLDSACKVFTTI-KEKDVVSWNSMINGF------------------ 207
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
V+ P++ALELFKKM E V MV VLSAC+ + NL++GR V
Sbjct: 208 -------------VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQV 254
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA----- 294
+I +N + + + A++DMY+KCGS+E+A F + KD VTWTTM++G A
Sbjct: 255 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDY 314
Query: 295 --------------------------NYGLGNEALRVFYQME-RKGIKPNEATFVSVLAA 327
G NEAL VF++++ +K +K N+ T VS L+A
Sbjct: 315 EAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSA 374
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C G + G + + + ++ L+ + S+ G L ++ E + D F+
Sbjct: 375 CAQVGALELGRWIHSYIKK-HGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFV 433
Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 120/247 (48%), Gaps = 3/247 (1%)
Query: 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLS 225
++ AR+VFDEI + W +++ P ++ F M+ E P++ ++
Sbjct: 80 LEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIK 139
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
A + +S+L G+ +H +++ + D FV +LI Y CG L+ A F KDVV+
Sbjct: 140 AAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVS 199
Query: 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
W +MI G G ++AL +F +ME + +K + T V VL+AC + G Q+ +
Sbjct: 200 WNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIE 259
Query: 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLG 405
RV + ++D+ ++ G + A+ M +D +++ +L +++
Sbjct: 260 E-NRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAISEDYEAA 317
Query: 406 KKVANNM 412
++V N+M
Sbjct: 318 REVLNSM 324
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 176/465 (37%), Positives = 267/465 (57%), Gaps = 6/465 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + K L+ D YV NSL+ Y + +FD+MP RDV SWN L+S Y
Sbjct: 65 GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124
Query: 62 FSDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + +FK++ E + D+ T+V SAC+ L+ L G+ ++ + E +
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVV-TEFEMSVR 183
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ M+ KC +D+A +FD M +N+ ++ GY+ +D AR +F+ K
Sbjct: 184 IGNALVDMFCKCGCLDKARAVFDSM-RDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVK 242
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VLW +MM+G V+ + +EALELF+ M G+ PD V+VS+L+ C+ L+ G+ +H
Sbjct: 243 DVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIH 302
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I +N +T D V TAL+DMY+KCG +E AL FY+ +D +WT++I GLA G+
Sbjct: 303 GYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSG 362
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL ++Y+ME G++ + TFV+VL AC H G + EG ++F M + VQP EH CL
Sbjct: 363 RALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCL 422
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDK---FISYKALLSACITYSEFDLGKKVANNMMKLGN 417
+DLL RAGLL +AEE I M E Y +LLSA Y + ++VA + K+
Sbjct: 423 IDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEV 482
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A+ LL++ YA W +V RR MK+L RK PG S I++
Sbjct: 483 SDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEI 527
Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 168/358 (46%), Gaps = 70/358 (19%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
+N ++ D +VL LF +L +G+ D TL ++ + RL K+ G+ VH YA
Sbjct: 14 YNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAV 73
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K GLE+ + N+L+ MYA +++ ++FDEM +R++VS N LI+ Y
Sbjct: 74 KAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEM-PQRDVVSWNGLISSY---------- 122
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSL 230
V + E+A+ +FK+M E + DE +VS LSACS+L
Sbjct: 123 ---------------------VGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSAL 161
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL---------------------- 268
NL+ G ++RF++ + AL+DM+ KCG L
Sbjct: 162 KNLEIGERIYRFVV-TEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMV 220
Query: 269 ---------EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
+EA V F ++ KDVV WT M+ G + +EAL +F M+ GI+P+
Sbjct: 221 FGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNF 280
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEE 375
VS+L C +G + +G + G + + T++ V LVD+ ++ G + A E
Sbjct: 281 VLVSLLTGCAQTGALEQGKWIH---GYINENRVTVDKVVGTALVDMYAKCGCIETALE 335
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 96/200 (48%), Gaps = 3/200 (1%)
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
++++ M+ K + L LF ++ +G+ PD + VL + L + G VH
Sbjct: 11 LLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHG 70
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ ++ + D++V +L+ MY+ G +E F + +DVV+W +I G +
Sbjct: 71 YAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFED 130
Query: 302 ALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ VF +M ++ +K +E T VS L+AC + G +++R + V + ++ L
Sbjct: 131 AIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFV--VTEFEMSVRIGNAL 188
Query: 361 VDLLSRAGLLYQAEEFIKIM 380
VD+ + G L +A M
Sbjct: 189 VDMFCKCGCLDKARAVFDSM 208
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 306 bits (783), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 169/464 (36%), Positives = 249/464 (53%), Gaps = 33/464 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H H K SD +V +LI Y R +A +LF++ F D+ +WN +M+ Y
Sbjct: 435 LSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYT 493
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D + L LF + +G +D TL +F C L ++ GK VH YA K G + L
Sbjct: 494 QSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLW 553
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ + +L MY KC +M A + FD I
Sbjct: 554 VSSGILDMYVKCGDMSAA--------------------------------QFAFDSIPVP 581
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V W +M+ GC++ + E A +F +M GV PDE + ++ A S L+ L+ GR +H
Sbjct: 582 DDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIH 641
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
L+ N T D FV T+L+DMY+KCGS+++A F + + ++ W M+ GLA +G G
Sbjct: 642 ANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGK 701
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
E L++F QM+ GIKP++ TF+ VL+AC HSGL++E + R M G Y ++P IEH+ CL
Sbjct: 702 ETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCL 761
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
D L RAGL+ QAE I+ M E Y+ LL+AC + + GK+VA +++L
Sbjct: 762 ADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDS 821
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
AYVLLSN YA W E+ AR MK + +K PG S I++K+
Sbjct: 822 SAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKN 865
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/488 (24%), Positives = 210/488 (43%), Gaps = 113/488 (23%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS----- 57
+ H + K LD D +V +L++ Y + + +VLF++MP+RDV WN ++
Sbjct: 165 ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEM 224
Query: 58 ------------------------------IYNDFSDSGEV------------------- 68
I D SD+G+V
Sbjct: 225 GFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRN 284
Query: 69 ---------------LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV 113
L F ++ + D++T +++ + +++ L G+ VHC A K+
Sbjct: 285 KGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKL 344
Query: 114 GLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173
GL+ ML + N+L+ MY K LR F AR V
Sbjct: 345 GLDLMLTVSNSLINMYCK-------LRKFG-------------------------FARTV 372
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS-N 232
FD + ++D++ W S++ G + EA+ LF +++ G+ PD+ M SVL A SSL
Sbjct: 373 FDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEG 432
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
L + VH ++ N D+FV TALID YS+ ++EA + F + + D+V W M+ G
Sbjct: 433 LSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAG 491
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
G++ L++F M ++G + ++ T +V C I +G Q+ Y ++
Sbjct: 492 YTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVH-----AYAIKS 546
Query: 353 --TIEHFVC--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
++ +V ++D+ + G + A+ +P D +++ ++S CI E + V
Sbjct: 547 GYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDD-VAWTTMISGCIENGEEERAFHV 605
Query: 409 ANNMMKLG 416
+ M +G
Sbjct: 606 FSQMRLMG 613
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 119/453 (26%), Positives = 198/453 (43%), Gaps = 42/453 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H K LD + V NSLI+ Y ++ F AR +FD M RD+ SWN++++
Sbjct: 333 LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIA 392
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL-EKLHYGKTVHCYATKVGLEYML 119
E + LF QL+ G+ D+ T+ + A + L E L K VH +A K+
Sbjct: 393 QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDS 452
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ AL+ Y++ + M EA LF+ R N
Sbjct: 453 FVSTALIDAYSRNRCMKEAEILFE----RHNF---------------------------- 480
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
D+V W +MM G ++ + L+LF M +G D+ + +V C L + G+ V
Sbjct: 481 -DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQV 539
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + +++ D +V + ++DMY KCG + A F D V WTTMI G G
Sbjct: 540 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEE 599
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV- 358
A VF QM G+ P+E T ++ A + +G Q+ ++ T + FV
Sbjct: 600 ERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIH---ANALKLNCTNDPFVG 656
Query: 359 -CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
LVD+ ++ G + A K + + ++ A+L + E ++ M LG
Sbjct: 657 TSLVDMYAKCGSIDDAYCLFKRIEMMN-ITAWNAMLVGLAQHGEGKETLQLFKQMKSLGI 715
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450
+ + V + H V+EA ++M+ +
Sbjct: 716 KPDK--VTFIGVLSACSHSGLVSEAYKHMRSMH 746
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/420 (25%), Positives = 195/420 (46%), Gaps = 50/420 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK HA + + + ++ N+LI Y + T AR +FDKMP RD+ SWN++++ Y
Sbjct: 57 LGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYA 116
Query: 61 DFSDS-----GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
S+ + +LF+ L + + ++TL + C + ++ H YA K+GL
Sbjct: 117 QSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGL 176
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM----ELVDLAR 171
+ + AL+ +Y K ++ E LF+EM R++V N+++ Y++M E +DL+
Sbjct: 177 DGDEFVAGALVNIYLKFGKVKEGKVLFEEM-PYRDVVLWNLMLKAYLEMGFKEEAIDLSS 235
Query: 172 EVF------DEIV----------DKDIVLWRSMMHGC------------------VKAKQ 197
+EI D D +S +G + + Q
Sbjct: 236 AFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQ 295
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
L+ F M++ V D+ + +L+ + +L G+ VH L+ + V +
Sbjct: 296 YSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNS 355
Query: 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317
LI+MY K A F +D+++W ++I G+A GL EA+ +F Q+ R G+KP+
Sbjct: 356 LINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPD 415
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMG-GVYRVQPTIEHFV--CLVDLLSRAGLLYQAE 374
+ T SVL A + + EG L +++ ++ + FV L+D SR + +AE
Sbjct: 416 QYTMTSVLKA---ASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAE 472
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 10/200 (5%)
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
LM KC + F+E R +N LI+ Y + AR VFD++ D+D+V W
Sbjct: 55 LMLGKCTH--ARILTFEENPER---FLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWN 109
Query: 187 SMMHGCVKAKQP-----EEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
S++ ++ + ++A LF+ + + V + +L C + H
Sbjct: 110 SILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHG 169
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + D FV AL+++Y K G ++E V F + +DVV W M++ G E
Sbjct: 170 YACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEE 229
Query: 302 ALRVFYQMERKGIKPNEATF 321
A+ + G+ PNE T
Sbjct: 230 AIDLSSAFHSSGLNPNEITL 249
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
S+L G+ H IL + F+ LI MYSKCGSL A F K +D+V+W ++
Sbjct: 53 SDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSI- 111
Query: 291 EGLANYGLGNE--------ALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
LA Y +E A +F + + + + T +L C HSG +
Sbjct: 112 --LAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 304 bits (778), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 167/474 (35%), Positives = 262/474 (55%), Gaps = 10/474 (2%)
Query: 1 MGKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
M KG+ H + K+ SD+Y+G++L+ Y + DA+ +FD+M R+V SWN+L++
Sbjct: 168 MNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITC 227
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEY 117
+ + E L +F+ ++ + D++TL + SACA L + G+ VH K L
Sbjct: 228 FEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRN 287
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + NA + MYAKC + EA +FD M RN+++ +I+GY AR +F ++
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSM-PIRNVIAETSMISGYAMAASTKAARLMFTKM 346
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
++++V W +++ G + + EEAL LF + E V P ++L AC+ L+ L G
Sbjct: 347 AERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGM 406
Query: 238 ------LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L H F Q+ D FV +LIDMY KCG +EE + F K +D V+W MI
Sbjct: 407 QAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMII 466
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
G A G GNEAL +F +M G KP+ T + VL+AC H+G + EG F M + V
Sbjct: 467 GFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVA 526
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
P +H+ C+VDLL RAG L +A+ I+ MP + + + +LL+AC + LGK VA
Sbjct: 527 PLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEK 586
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
++++ + YVLLSN YA G W +V R++M++ K+PG S I ++ +
Sbjct: 587 LLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGH 640
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 106/388 (27%), Positives = 176/388 (45%), Gaps = 97/388 (25%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMS-----IY 59
+HA V K+ ++I++ N LI Y + D R +FDKMP R++ +WN++++ +
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 60 NDFSDS--------------------------GEVLILFKQLIFEGIVADKITLVILFSA 93
D +DS E L F + EG V ++ + + SA
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
C+ L ++ G VH K + + +AL+ MY+KC +++A R+FDEMG RN+VS
Sbjct: 162 CSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGD-RNVVS 220
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE-EALELFKKMIDEG 212
N LI C + P EAL++F+ M++
Sbjct: 221 WNSLIT--------------------------------CFEQNGPAVEALDVFQMMLESR 248
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN-ITQDAFVKTALIDMYSKCGSLEE- 270
V PDE + SV+SAC+SLS ++ G+ VH +++N+ + D + A +DMY+KC ++E
Sbjct: 249 VEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEA 308
Query: 271 ------------------------------ALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
A + F K ++VV+W +I G G
Sbjct: 309 RFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENE 368
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAAC 328
EAL +F ++R+ + P +F ++L AC
Sbjct: 369 EALSLFCLLKRESVCPTHYSFANILKAC 396
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 154/299 (51%), Gaps = 6/299 (2%)
Query: 102 YGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY 161
Y + VH K G + ++N L+ Y+KC +++ ++FD+M +RNI + N ++ G
Sbjct: 38 YVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKM-PQRNIYTWNSVVTGL 96
Query: 162 IDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMV 221
+ +D A +F + ++D W SM+ G + + EEAL F M EG +E
Sbjct: 97 TKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFA 156
Query: 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK 281
SVLSACS L+++ G VH I ++ D ++ +AL+DMYSKCG++ +A F + +
Sbjct: 157 SVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDR 216
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341
+VV+W ++I G EAL VF M ++P+E T SV++AC I G ++
Sbjct: 217 NVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVH 276
Query: 342 RRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP-----AEDKFISYKALLSA 395
R+ +++ I VD+ ++ + +A MP AE IS A+ ++
Sbjct: 277 GRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAAS 335
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 156/460 (33%), Positives = 260/460 (56%), Gaps = 33/460 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
HAH+ K LDSD +V NSLI Y LF A LFD +DV +W ++ +
Sbjct: 125 FHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGS 184
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLNMEN 123
+ E ++ F ++ G+ A+++T+V + A ++E + +G++VH + G ++ + + +
Sbjct: 185 ASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGS 244
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
+L+ MY KC D+A ++VFDE+ +++V
Sbjct: 245 SLVDMYGKCSCYDDA--------------------------------QKVFDEMPSRNVV 272
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W +++ G V+++ ++ + +F++M+ V P+E+ + SVLSAC+ + L GR VH ++
Sbjct: 273 TWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYM 332
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++N+I + T LID+Y KCG LEEA++ F + K+V TWT MI G A +G +A
Sbjct: 333 IKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAF 392
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
+FY M + PNE TF++VL+AC H GL+ EG +LF M G + ++P +H+ C+VDL
Sbjct: 393 DLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDL 452
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
R GLL +A+ I+ MP E + + AL +C+ + +++LGK A+ ++KL Y
Sbjct: 453 FGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRY 512
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
LL+N Y+ +W EVA R+ MK+ Q K PG S I++K
Sbjct: 513 TLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 138/275 (50%), Gaps = 40/275 (14%)
Query: 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +H +T + D+++G+SL+ YG+ + + DA+ +FD+MP R+V +W L++ Y
Sbjct: 223 GRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYV 282
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ +++F++++ + ++ TL + SACA + LH G+ VHCY K +E
Sbjct: 283 QSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTT 342
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
L+ +Y KC ++EA+ +F+ + +N+ + +ING+
Sbjct: 343 AGTTLIDLYVKCGCLEEAILVFERL-HEKNVYTWTAMINGF------------------- 382
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
HG + +A +LF M+ V+P+E ++VLSAC+ ++ GR
Sbjct: 383 -------AAHGYAR-----DAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGR--- 427
Query: 241 RFIL----QNNITQDAFVKTALIDMYSKCGSLEEA 271
R L + N+ A ++D++ + G LEEA
Sbjct: 428 RLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEA 462
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 295 bits (755), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 162/460 (35%), Positives = 254/460 (55%), Gaps = 1/460 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH K A D +V + Y AR +FD+M RDV +WNT++ Y
Sbjct: 130 GMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCR 189
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
F E LF+++ ++ D++ L + SAC R + Y + ++ + + + ++
Sbjct: 190 FGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHL 249
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYA MD A F +M S RN+ +++GY +D A+ +FD+ KD
Sbjct: 250 LTALVTMYAGAGCMDMAREFFRKM-SVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKD 308
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ V++ P+EAL +F++M G+ PD M SV+SAC++L L + VH
Sbjct: 309 LVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHS 368
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I N + + + ALI+MY+KCG L+ F K ++VV+W++MI L+ +G ++
Sbjct: 369 CIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASD 428
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F +M+++ ++PNE TFV VL C HSGL+ EG ++F M Y + P +EH+ C+V
Sbjct: 429 ALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMV 488
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL RA LL +A E I+ MP + + +L+SAC + E +LGK A +++L
Sbjct: 489 DLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDG 548
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
A VL+SN YA E W +V RR M+E K+ G S ID
Sbjct: 549 ALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRID 588
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 14/226 (6%)
Query: 170 AREVFDEIVDK-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS 228
A VF I + +++ + ++ +P + ++++ G D+ + +L A S
Sbjct: 63 ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122
Query: 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTT 288
+S L G +H + D FV+T +DMY+ CG + A F + +DVVTW T
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
MIE +GL +EA ++F +M+ + P+E ++++AC +G + R +Y
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNM-------RYNRAIY 235
Query: 349 R------VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
V+ LV + + AG + A EF + M + F+S
Sbjct: 236 EFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVS 281
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 292 bits (747), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 162/477 (33%), Positives = 258/477 (54%), Gaps = 36/477 (7%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYG---RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
HA + KT L D + + L+ F + A + +++ + + N+++ Y +
Sbjct: 59 HAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANS 118
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
S L +F++++ + DK + + ACA G+ +H K GL + +E
Sbjct: 119 STPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVE 178
Query: 123 NALLLMYAKCKE-------------------------------MDEALRLFDEMGSRRNI 151
N L+ +Y + +DEA LFDEM RN+
Sbjct: 179 NTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEM-EERNV 237
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
S N +I+GY LV A+EVFD + +D+V W +M+ E LE+F KM+D+
Sbjct: 238 ESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDD 297
Query: 212 GV-TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
PD +VSVLSAC+SL +L G VH +I ++ I + F+ TAL+DMYSKCG +++
Sbjct: 298 STEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDK 357
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
AL F T +DV TW ++I L+ +GLG +AL +F +M +G KPN TF+ VL+AC H
Sbjct: 358 ALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNH 417
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
G++ + +LF M VYRV+PTIEH+ C+VDLL R G + +AEE + +PA++ I +
Sbjct: 418 VGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILLE 477
Query: 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
+LL AC + + + +++AN +++L + Y +SN YA +G W +V + RRNM+
Sbjct: 478 SLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDGRRNMR 534
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 93/214 (43%), Gaps = 40/214 (18%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H ++ K ++ + ++ +L+ Y + A +F RDV +WN+++S +
Sbjct: 323 GEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSV 382
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L +F ++++EG + IT + + SAC VG+
Sbjct: 383 HGLGKDALEIFSEMVYEGFKPNGITFIGVLSAC----------------NHVGM------ 420
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGS----RRNIVSLNILINGYIDMELVDLAREVFDEI 177
+D+A +LF+ M S I +++ M ++ A E+ +EI
Sbjct: 421 -------------LDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEI 467
Query: 178 -VDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
D+ +L S++ C + Q E+A + ++++
Sbjct: 468 PADEASILLESLLGACKRFGQLEQAERIANRLLE 501
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 106/252 (42%), Gaps = 23/252 (9%)
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
E KKM TP V +LS +L + H F+L+ + D F + L+
Sbjct: 27 ENLKKMSVCSSTP-----VPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFA 81
Query: 263 S---KCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
+ + ++ A + + T ++I AN AL VF +M + P++
Sbjct: 82 ATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKY 141
Query: 320 TFVSVLAACRHSGLITEGCQ---LFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAE 374
+F VL AC EG Q LF + G V V FV LV++ R+G A
Sbjct: 142 SFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDV------FVENTLVNVYGRSGYFEIAR 195
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
+ + MP D +S+ +LLSA + D + + + M + ++ E++ + + YA G
Sbjct: 196 KVLDRMPVRDA-VSWNSLLSAYLEKGLVDEARALFDEMEE---RNVESWNFMISGYAAAG 251
Query: 435 HWTEVAEARRNM 446
E E +M
Sbjct: 252 LVKEAKEVFDSM 263
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 291 bits (744), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/497 (32%), Positives = 279/497 (56%), Gaps = 34/497 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
GK +H+ + K L ++ V NSL++ Y + A+ +FD+M RD+ SWN +++++
Sbjct: 165 GKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQ 224
Query: 60 --------------------------NDFSDSG---EVLILFKQLIFEGIVA-DKITLVI 89
+ F+ G L +F +++ + +++ D+ TL
Sbjct: 225 VGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLAS 284
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA LEKL GK +H + G + + NAL+ MY++C ++ A RL ++ G++
Sbjct: 285 VLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKD 344
Query: 150 -NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
I L++GYI + ++ A+ +F + D+D+V W +M+ G + EA+ LF+ M
Sbjct: 345 LKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSM 404
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+ G P+ + ++LS SSL++L +G+ +H +++ V ALI MY+K G++
Sbjct: 405 VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNI 464
Query: 269 EEALVTFYKTDC-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
A F C +D V+WT+MI LA +G EAL +F M +G++P+ T+V V +A
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSA 524
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C H+GL+ +G Q F M V ++ PT+ H+ C+VDL RAGLL +A+EFI+ MP E +
Sbjct: 525 CTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVV 584
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
++ +LLSAC + DLGK A ++ L ++ AY L+N Y+ G W E A+ R++MK
Sbjct: 585 TWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMK 644
Query: 448 ELQTRKKPGNSIIDLKH 464
+ + +K+ G S I++KH
Sbjct: 645 DGRVKKEQGFSWIEVKH 661
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/489 (27%), Positives = 217/489 (44%), Gaps = 74/489 (15%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H V K+ L +Y+ N+L++ Y + AR LFD+MP R SWNT++S Y+ D
Sbjct: 36 VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95
Query: 65 SGEVLILFKQL-------------------------------IFEGIVADKITLVILFSA 93
F QL + EGI + TL + ++
Sbjct: 96 MDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLAS 155
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
A + GK VH + K+GL +++ N+LL MYAKC + A +FD M R+I S
Sbjct: 156 VAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRM-VVRDISS 214
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI-DEG 212
N +I ++ + +DLA F+++ ++DIV W SM+ G + AL++F KM+ D
Sbjct: 215 WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSL 274
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE--- 269
++PD + SVLSAC++L L G+ +H I+ V ALI MYS+CG +E
Sbjct: 275 LSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETAR 334
Query: 270 ------------------------------EALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
+A F +DVV WT MI G +G
Sbjct: 335 RLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSY 394
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMGGVYRVQPTIEH 356
EA+ +F M G +PN T ++L+ ++ G Q+ + G +Y V +
Sbjct: 395 GEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVS--- 451
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L+ + ++AG + A ++ E +S+ +++ A + + ++ M+ G
Sbjct: 452 -NALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEG 510
Query: 417 -NQSHEAYV 424
H YV
Sbjct: 511 LRPDHITYV 519
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 134/331 (40%), Gaps = 74/331 (22%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVL-------------------- 40
+GK +H+H+ T D V N+LI Y R AR L
Sbjct: 297 IGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDG 356
Query: 41 -------------FDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87
F + RDV +W ++ Y GE + LF+ ++ G + TL
Sbjct: 357 YIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTL 416
Query: 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS 147
+ S + L L +GK +H A K G Y +++ NAL+ MYAK + A R FD +
Sbjct: 417 AAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRC 476
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
R+ VS W SM+ + EEALELF+
Sbjct: 477 ERDTVS-------------------------------WTSMIIALAQHGHAEEALELFET 505
Query: 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT-----ALIDMY 262
M+ EG+ PD V V SAC+ + GR F + ++ D + T ++D++
Sbjct: 506 MLMEGLRPDHITYVGVFSACTHAGLVNQGR--QYFDMMKDV--DKIIPTLSHYACMVDLF 561
Query: 263 SKCGSLEEALVTFYKTDCK-DVVTWTTMIEG 292
+ G L+EA K + DVVTW +++
Sbjct: 562 GRAGLLQEAQEFIEKMPIEPDVVTWGSLLSA 592
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 288 bits (736), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 249/465 (53%), Gaps = 35/465 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSI 58
MG+ +HA V + D+D++V N LI Y + AR +F+ +P R + SW ++S
Sbjct: 137 MGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSA 196
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
Y + E L +F Q+ + D + LV + +A L+ L G+++H K+GLE
Sbjct: 197 YAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIE 256
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ +L MYAKC ++ A LFD+M S
Sbjct: 257 PDLLISLNTMYAKCGQVATAKILFDKMKS------------------------------- 285
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
+++LW +M+ G K EA+++F +MI++ V PD + S +SAC+ + +L+ R
Sbjct: 286 -PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARS 344
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
++ ++ +++ D F+ +ALIDM++KCGS+E A + F +T +DVV W+ MI G +G
Sbjct: 345 MYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGR 404
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EA+ ++ MER G+ PN+ TF+ +L AC HSG++ EG F RM +++ P +H+
Sbjct: 405 AREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYA 463
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
C++DLL RAG L QA E IK MP + + ALLSAC + +LG+ A + +
Sbjct: 464 CVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPS 523
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+ YV LSN YA W VAE R MKE K G S ++++
Sbjct: 524 NTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVR 568
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 171/367 (46%), Gaps = 33/367 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K +HA + L ++ LIH T AR +FD +P + WN ++ Y+
Sbjct: 38 KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ + L+++ + + D T L AC+ L L G+ VH ++G + + ++
Sbjct: 98 NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
N L+ +YAKC+ + A +F+ + + ++ I
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGL------------------------------PLPERTI 187
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
V W +++ + +P EALE+F +M V PD +VSVL+A + L +L+ GR +H
Sbjct: 188 VSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHAS 247
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+++ + + + +L MY+KCG + A + F K +++ W MI G A G EA
Sbjct: 248 VVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREA 307
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG-GVYRVQPTIEHFVCLV 361
+ +F++M K ++P+ + S ++AC G + + ++ +G YR I L+
Sbjct: 308 IDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISS--ALI 365
Query: 362 DLLSRAG 368
D+ ++ G
Sbjct: 366 DMFAKCG 372
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 167/464 (35%), Positives = 257/464 (55%), Gaps = 7/464 (1%)
Query: 3 KGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +H H+ + L Y+ NSL+ FY + F A +F +MP DV S+N ++ Y
Sbjct: 150 KQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAK 209
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E L L+ +++ +GI D+ T++ L C L + GK VH + + G Y N+
Sbjct: 210 QGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNL 269
Query: 122 --ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
NALL MY KCKE A R FD M ++++ S N ++ G++ + ++ A+ VFD++
Sbjct: 270 ILSNALLDMYFKCKESGLAKRAFDAM-KKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPK 328
Query: 180 KDIVLWRSMMHGCVKAKQPEEAL-ELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
+D+V W S++ G K + + ELF +M I E V PD MVS++S ++ L +GR
Sbjct: 329 RDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGR 388
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH +++ + DAF+ +ALIDMY KCG +E A + F KDV WT+MI GLA +G
Sbjct: 389 WVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHG 448
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G +AL++F +M+ +G+ PN T ++VL AC HSGL+ EG +F M + P EH+
Sbjct: 449 NGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHY 508
Query: 358 VCLVDLLSRAGLLYQAEEFI-KIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
LVDLL RAG + +A++ + K MP + ++LSAC + + + ++KL
Sbjct: 509 GSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLE 568
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
+ YVLLSN YA G W + R M+ +K G S +
Sbjct: 569 PEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSV 612
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V + L D ++ ++LI Y + + A ++F +DV W ++++
Sbjct: 387 GRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAF 446
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
+ + L LF ++ EG+ + +TL+ + +AC+
Sbjct: 447 HGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACS 480
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 161/449 (35%), Positives = 258/449 (57%), Gaps = 4/449 (0%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
++Y N+++ Y + + ARV+FD MP RDV SWNT++ Y + E L +K+
Sbjct: 112 NLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFR 171
Query: 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136
GI ++ + L +AC + +L + H G + + +++ YAKC +M+
Sbjct: 172 RSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQME 231
Query: 137 EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196
A R FDEM + ++I LI+GY + ++ A ++F E+ +K+ V W +++ G V+
Sbjct: 232 SAKRCFDEM-TVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQG 290
Query: 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256
AL+LF+KMI GV P++ S L A +S+++L++G+ +H ++++ N+ +A V +
Sbjct: 291 SGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVIS 350
Query: 257 ALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315
+LIDMYSK GSLE + F D K D V W TMI LA +GLG++ALR+ M + ++
Sbjct: 351 SLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQ 410
Query: 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375
PN T V +L AC HSGL+ EG + F M + + P EH+ CL+DLL RAG +
Sbjct: 411 PNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMR 470
Query: 376 FIKIMPAE-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434
I+ MP E DK I + A+L C + +LGKK A+ ++KL +S Y+LLS+ YA G
Sbjct: 471 KIEEMPFEPDKHI-WNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHG 529
Query: 435 HWTEVAEARRNMKELQTRKKPGNSIIDLK 463
W V + R MK+ + K+ S I+++
Sbjct: 530 KWELVEKLRGVMKKRRVNKEKAVSWIEIE 558
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/412 (24%), Positives = 183/412 (44%), Gaps = 34/412 (8%)
Query: 47 RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV 106
R + + +S + ++ + + + L +GI L L C + L GK +
Sbjct: 9 RPICVAQSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWI 68
Query: 107 HCYATKVGLEYMLNM-ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME 165
H + G + + N L+ MY KC + +A ++FD+M RN+ S N +++GY+
Sbjct: 69 HRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQM-HLRNLYSWNNMVSGYVKSG 127
Query: 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS 225
++ AR VFD + ++D+V W +M+ G + EAL +K+ G+ +E +L+
Sbjct: 128 MLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLT 187
Query: 226 ACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285
AC LQ R H +L + + ++ID Y+KCG +E A F + KD+
Sbjct: 188 ACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHI 247
Query: 286 WTTMIEG----------------------------LANY---GLGNEALRVFYQMERKGI 314
WTT+I G +A Y G GN AL +F +M G+
Sbjct: 248 WTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGV 307
Query: 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374
KP + TF S L A + G ++ M V+P L+D+ S++G L +E
Sbjct: 308 KPEQFTFSSCLCASASIASLRHGKEIHGYMIRT-NVRPNAIVISSLIDMYSKSGSLEASE 366
Query: 375 EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLL 426
+I + + + ++SA + ++ ++M+K Q + +++
Sbjct: 367 RVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVV 418
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 112/302 (37%), Gaps = 63/302 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ + H V S++ + S+I Y + A+ FD+M +D+ W TL+S Y
Sbjct: 197 LNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYA 256
Query: 61 DFSD-------------------------------SGEVLILFKQLIFEGIVADKITLVI 89
D L LF+++I G+ ++ T
Sbjct: 257 KLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSS 316
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
A A + L +GK +H Y + + + ++L+ MY+K ++ + R+F
Sbjct: 317 CLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVF------- 369
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+ D+ D V W +M+ + +AL + MI
Sbjct: 370 ----------------------RICDD--KHDCVFWNTMISALAQHGLGHKALRMLDDMI 405
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
V P+ +V +L+ACS ++ G R +Q+ I D LID+ + G
Sbjct: 406 KFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCF 465
Query: 269 EE 270
+E
Sbjct: 466 KE 467
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 285 bits (730), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 162/443 (36%), Positives = 259/443 (58%), Gaps = 18/443 (4%)
Query: 37 ARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLI---LFKQLIFEGIV-ADKITLVILFS 92
A +F++MP R+ SWNT++ +++ SD + LI LF +++ + V ++ T +
Sbjct: 78 AHKIFNQMPQRNCFSWNTIIRGFSE-SDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLK 136
Query: 93 ACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE-------- 144
ACA+ K+ GK +H A K G + + L+ MY C M +A LF +
Sbjct: 137 ACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMV 196
Query: 145 -MGSRRN----IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
M RR IV N++I+GY+ + AR +FD++ + +V W +M+ G +
Sbjct: 197 VMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFK 256
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
+A+E+F++M + P+ +VSVL A S L +L+ G +H + + I D + +ALI
Sbjct: 257 DAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALI 316
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
DMYSKCG +E+A+ F + ++V+TW+ MI G A +G +A+ F +M + G++P++
Sbjct: 317 DMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDV 376
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379
++++L AC H GL+ EG + F +M V ++P IEH+ C+VDLL R+GLL +AEEFI
Sbjct: 377 AYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILN 436
Query: 380 MPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439
MP + + +KALL AC ++GK+VAN +M + AYV LSN YA +G+W+EV
Sbjct: 437 MPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEV 496
Query: 440 AEARRNMKELQTRKKPGNSIIDL 462
+E R MKE RK PG S+ID+
Sbjct: 497 SEMRLRMKEKDIRKDPGCSLIDI 519
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 149/326 (45%), Gaps = 71/326 (21%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN---DFSDSGEVLIL 71
D +I + N +I Y R+ AR+LFDKM R V SWNT++S Y+ F D+ EV
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEV--- 261
Query: 72 FKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK 131
F+++ I + +TLV + A +RL L G+ +H YA G+ + +AL+ MY+K
Sbjct: 262 FREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSK 321
Query: 132 CKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHG 191
C +++A+ +F+ + R N+++ + +ING+ +HG
Sbjct: 322 CGIIEKAIHVFERL-PRENVITWSAMINGF--------------------------AIHG 354
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
Q +A++ F KM GV P + +++L+ACS ++ GR R+ Q ++ D
Sbjct: 355 -----QAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGR---RYFSQ-MVSVD 405
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
E + Y M++ L GL +EA M
Sbjct: 406 GL----------------EPRIEHY----------GCMVDLLGRSGLLDEAEEFILNMP- 438
Query: 312 KGIKPNEATFVSVLAACRHSGLITEG 337
IKP++ + ++L ACR G + G
Sbjct: 439 --IKPDDVIWKALLGACRMQGNVEMG 462
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH + + + D +G++LI Y + + A +F+++P +V +W+ +++ +
Sbjct: 292 LGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFA 351
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
+G+ + F ++ G+ + + L +AC+ + G+ V GLE +
Sbjct: 352 IHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRI 411
Query: 120 NMENALLLMYAKCKEMDEA 138
++ + + +DEA
Sbjct: 412 EHYGCMVDLLGRSGLLDEA 430
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 285 bits (728), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 161/462 (34%), Positives = 238/462 (51%), Gaps = 31/462 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H K+ L + G SL Y R AR +FD++ D SWN +++ +
Sbjct: 289 GSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLAN 348
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + +F Q+ G + D I+L L A + L G +H Y K G L +
Sbjct: 349 NGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTV 408
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+LL MY C ++ LF++ RN + D
Sbjct: 409 CNSLLTMYTFCSDLYCCFNLFEDF---RN----------------------------NAD 437
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +++ C++ +QP E L LFK M+ PD M ++L C +S+L+ G VH
Sbjct: 438 SVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHC 497
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ L+ + + F+K LIDMY+KCGSL +A F D +DVV+W+T+I G A G G E
Sbjct: 498 YSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEE 557
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F +M+ GI+PN TFV VL AC H GL+ EG +L+ M + + PT EH C+V
Sbjct: 558 ALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVV 617
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL+RAG L +AE FI M E + +K LLSAC T L +K A N++K+ +
Sbjct: 618 DLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNST 677
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
A+VLL + +A G+W A R +MK+ +K PG S I+++
Sbjct: 678 AHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIE 719
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 160/340 (47%), Gaps = 33/340 (9%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H H+ + D + N ++ YG+ DAR +FD MP R++ S+ ++++ Y+
Sbjct: 86 GRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQ 145
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + L+ +++ E +V D+ + ACA + GK +H K+ L
Sbjct: 146 NGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIA 205
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+NAL+ MY + +M +A R VF I KD
Sbjct: 206 QNALIAMYVRFNQMSDASR--------------------------------VFYGIPMKD 233
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLSNLQYGRLVH 240
++ W S++ G + EAL K+M+ GV P+E + S L ACSSL YG +H
Sbjct: 234 LISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIH 293
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + +A +L DMY++CG L A F + + D +W +I GLAN G +
Sbjct: 294 GLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYAD 353
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
EA+ VF QM G P+ + S+L A +++G Q+
Sbjct: 354 EAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQI 393
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 99/415 (23%), Positives = 177/415 (42%), Gaps = 49/415 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LHA V K S + N+LI Y R +DA +F +P +D+ SW+++++ ++
Sbjct: 186 LGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFS 245
Query: 61 DFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L K+++ G+ ++ AC+ L + YG +H K L
Sbjct: 246 QLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNA 305
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+L MYA+C ++ A R+FD++ R + S N++I G + D
Sbjct: 306 IAGCSLCDMYARCGFLNSARRVFDQI-ERPDTASWNVIIAGLANNGYAD----------- 353
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
EA+ +F +M G PD + S+L A + L G +
Sbjct: 354 --------------------EAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQI 393
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF--YKTDCKDVVTWTTMIEGLANYG 297
H +I++ D V +L+ MY+ C L F ++ + D V+W T++ +
Sbjct: 394 HSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNN-ADSVSWNTILTACLQHE 452
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI--E 355
E LR+F M +P+ T ++L C + G Q+ Y ++ + E
Sbjct: 453 QPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVH-----CYSLKTGLAPE 507
Query: 356 HFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
F+ L+D+ ++ G L QA M D +S+ L+ + Y++ G++
Sbjct: 508 QFIKNGLIDMYAKCGSLGQARRIFDSMDNRD-VVSWSTLI---VGYAQSGFGEEA 558
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 33/244 (13%)
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T + L AC+ L G+ +H + +Y + N +L MY KC
Sbjct: 69 TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKC------------- 115
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
GS R+ AREVFD + ++++V + S++ G + Q EA+ L+
Sbjct: 116 GSLRD-------------------AREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLY 156
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
KM+ E + PD+ S++ AC+S S++ G+ +H +++ + + ALI MY +
Sbjct: 157 LKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRF 216
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNEATFVSV 324
+ +A FY KD+++W+++I G + G EAL +M G+ PNE F S
Sbjct: 217 NQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSS 276
Query: 325 LAAC 328
L AC
Sbjct: 277 LKAC 280
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 71/120 (59%)
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC 280
+S++ ACSS +L GR +H IL +N D + ++ MY KCGSL +A F
Sbjct: 71 ISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPE 130
Query: 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
+++V++T++I G + G G EA+R++ +M ++ + P++ F S++ AC S + G QL
Sbjct: 131 RNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQL 190
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 1/182 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + KT L + ++ N LI Y + AR +FD M RDV SW+TL+ Y
Sbjct: 491 LGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYA 550
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
E LILFK++ GI + +T V + +AC+ + + G K T+ G+
Sbjct: 551 QSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTK 610
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ ++ + A+ ++EA R DEM ++V L++ V LA++ + I+
Sbjct: 611 EHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILK 670
Query: 180 KD 181
D
Sbjct: 671 ID 672
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 280 bits (717), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 267/463 (57%), Gaps = 2/463 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K ++A + L ++ ++ F ++ A LF+++ +V +N+++ Y
Sbjct: 27 KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 63 SDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S +V+ ++KQL+ + + D+ T +F +CA L + GK VH + K G + +
Sbjct: 87 SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVT 146
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENAL+ MY K ++ +A ++FDEM R+++S N L++GY + + A+ +F ++DK
Sbjct: 147 ENALIDMYMKFDDLVDAHKVFDEM-YERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKT 205
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W +M+ G EA++ F++M G+ PDE ++SVL +C+ L +L+ G+ +H
Sbjct: 206 IVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHL 265
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+ + + V ALI+MYSKCG + +A+ F + + KDV++W+TMI G A +G +
Sbjct: 266 YAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHG 325
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ F +M+R +KPN TF+ +L+AC H G+ EG + F M Y+++P IEH+ CL+
Sbjct: 326 AIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLI 385
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L+RAG L +A E K MP + + +LLS+C T D+ +++++L +
Sbjct: 386 DVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMG 445
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVLL+N YA G W +V+ R+ ++ +K PG S+I++ +
Sbjct: 446 NYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNN 488
Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 126/304 (41%), Gaps = 64/304 (21%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H H+ K + N+LI Y + DA +FD+M RDV SWN+L+S Y
Sbjct: 127 LGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYA 186
Query: 61 DFSD-----------------------SG--------EVLILFKQLIFEGIVADKITLVI 89
SG E + F+++ GI D+I+L+
Sbjct: 187 RLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLIS 246
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ +CA+L L GK +H YA + G + NAL+ MY+KC + +A++LF +M +
Sbjct: 247 VLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGK- 305
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
D++ W +M+ G A+E F +M
Sbjct: 306 -------------------------------DVISWSTMISGYAYHGNAHGAIETFNEMQ 334
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSL 268
V P+ + +LSACS + Q G + Q+ I LID+ ++ G L
Sbjct: 335 RAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKL 394
Query: 269 EEAL 272
E A+
Sbjct: 395 ERAV 398
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 280 bits (716), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 249/464 (53%), Gaps = 4/464 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF---YGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
K +HA + KT L D Y + F A+++FD D WN ++ +
Sbjct: 31 KQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGF 90
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ + L+L+++++ + T L AC+ L +H TK+G E +
Sbjct: 91 SCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDV 150
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N+L+ YA A LFD + + VS N +I GY+ +D+A +F ++ +
Sbjct: 151 YAVNSLINSYAVTGNFKLAHLLFDRIPEPDD-VSWNSVIKGYVKAGKMDIALTLFRKMAE 209
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K+ + W +M+ G V+A +EAL+LF +M + V PD + + LSAC+ L L+ G+ +
Sbjct: 210 KNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWI 269
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H ++ + I D+ + LIDMY+KCG +EEAL F K V WT +I G A +G G
Sbjct: 270 HSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHG 329
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA+ F +M++ GIKPN TF +VL AC ++GL+ EG +F M Y ++PTIEH+ C
Sbjct: 330 REAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGC 389
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VDLL RAGLL +A+ FI+ MP + + + ALL AC + +LG+++ ++ +
Sbjct: 390 IVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYH 449
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YV +N +A++ W + AE RR MKE K PG S I L+
Sbjct: 450 GGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLE 493
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 100/234 (42%), Gaps = 12/234 (5%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+++ KT + D +G LI Y + +A +F + + V +W L+S Y
Sbjct: 266 GKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAY 325
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTV-HCYATKVGLEYMLN 120
E + F ++ GI + IT + +AC+ + GK + + L+ +
Sbjct: 326 HGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIE 385
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++ + + +DEA R EM + N V L+ + ++L E+ + ++
Sbjct: 386 HYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAI 445
Query: 181 DIVLWRSMMHGC---VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
D +H K+ ++A E + M ++G V+ + CS++S
Sbjct: 446 DPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQG--------VAKVPGCSTIS 491
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 278 bits (712), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 169/463 (36%), Positives = 243/463 (52%), Gaps = 38/463 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H VTK DIYV NSL+HFYG +A +F +MP RDV SW +++ +
Sbjct: 125 GKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTR 184
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L F ++ E +A T V + + R+ L GK +H K L
Sbjct: 185 TGLYKEALDTFSKMDVEPNLA---TYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLET 241
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC+++ + A VF E+ KD
Sbjct: 242 GNALIDMYVKCEQLSD--------------------------------AMRVFGELEKKD 269
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
V W SM+ G V ++ +EA++LF M G+ PD ++ SVLSAC+SL + +GR VH
Sbjct: 270 KVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVH 329
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+IL I D + TA++DMY+KCG +E AL F K+V TW ++ GLA +G G
Sbjct: 330 EYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGL 389
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV-YRVQPTIEHFVC 359
E+LR F +M + G KPN TF++ L AC H+GL+ EG + F +M Y + P +EH+ C
Sbjct: 390 ESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKLEHYGC 449
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF-DLGKKVANNMMKLGNQ 418
++DLL RAGLL +A E +K MP + A+LSAC +L K++ ++ + + +
Sbjct: 450 MIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSACKNRGTLMELPKEILDSFLDIEFE 509
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YVLLSN +A W +VA RR MK K PG+S I+
Sbjct: 510 DSGVYVLLSNIFAANRRWDDVARIRRLMKVKGISKVPGSSYIE 552
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 122/466 (26%), Positives = 199/466 (42%), Gaps = 57/466 (12%)
Query: 9 VTKTALDSDIYVGNSLIHFYGRMALFTD--ARVLFDKMPFRDVGSWNTLMSIYNDFSDSG 66
+T+ L D+ + N ++ F G+ A F + +L S+NTL+S Y
Sbjct: 30 ITRDLLRDDLII-NKVVTFLGKSADFASYSSVILHSIRSVLSSFSYNTLLSSYAVCDKPR 88
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
+ +K + G D T +F AC + + GK +H TK+G + ++N+L+
Sbjct: 89 VTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLV 148
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
Y C E A ++F EM R D+V W
Sbjct: 149 HFYGVCGESRNACKVFGEMPVR--------------------------------DVVSWT 176
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
++ G + +EAL+ F KM V P+ V VL + + L G+ +H IL+
Sbjct: 177 GIITGFTRTGLYKEALDTFSKM---DVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKR 233
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
ALIDMY KC L +A+ F + + KD V+W +MI GL + EA+ +F
Sbjct: 234 ASLISLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLF 293
Query: 307 YQME-RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE---HF-VCLV 361
M+ GIKP+ SVL+AC G + G R Y + I+ H +V
Sbjct: 294 SLMQTSSGIKPDGHILTSVLSACASLGAVDHG-----RWVHEYILTAGIKWDTHIGTAIV 348
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+ ++ G + A E + +++ F ++ ALL + + M+KLG + +
Sbjct: 349 DMYAKCGYIETALEIFNGIRSKNVF-TWNALLGGLAIHGHGLESLRYFEEMVKLGFKPN- 406
Query: 422 AYVLLSNFYALEG--HWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
L++ AL H V E RR ++++R+ N L+HY
Sbjct: 407 ---LVTFLAALNACCHTGLVDEGRRYFHKMKSREY--NLFPKLEHY 447
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 148/337 (43%), Gaps = 65/337 (19%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GKG+H + K A + GN+LI Y + +DA +F ++ +D SWN+++S
Sbjct: 222 LGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLV 281
Query: 61 DFSDSGEVLILFKQL-IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
S E + LF + GI D L + SACA L + +G+ VH Y G+++
Sbjct: 282 HCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDT 341
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++ A++ MYAKC GYI+ L E+F+ I
Sbjct: 342 HIGTAIVDMYAKC---------------------------GYIETAL-----EIFNGIRS 369
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
K++ W +++ G E+L F++M+ G P+ ++ L+AC + GR
Sbjct: 370 KNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGR-- 427
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
R+ + +K+ +++ K LE + MI+ L GL
Sbjct: 428 -RYFHK--------MKSREYNLFPK---LEH---------------YGCMIDLLCRAGLL 460
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
+EAL + M +KP+ ++L+AC++ G + E
Sbjct: 461 DEALELVKAMP---VKPDVRICGAILSACKNRGTLME 494
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 278 bits (712), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 255/463 (55%), Gaps = 2/463 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ ++A + + ++ + + ++L+ Y + A+ LFD+ ++ N + S Y
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E L +F ++ G+ D+I+++ S+C++L + +GK+ H Y + G E N+
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI 374
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC D A R+FD M S + +V+ N ++ GY++ VD A E F+ + +K+
Sbjct: 375 CNALIDMYMKCHRQDTAFRIFDRM-SNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKN 433
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
IV W +++ G V+ EEA+E+F M EGV D M+S+ SAC L L + ++
Sbjct: 434 IVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIY 493
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I +N I D + T L+DM+S+CG E A+ F +DV WT I +A G
Sbjct: 494 YYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAE 553
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ +F M +G+KP+ FV L AC H GL+ +G ++F M ++ V P H+ C+
Sbjct: 554 RAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCM 613
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A + I+ MP E + + +LL+AC ++ A + L +
Sbjct: 614 VDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERT 673
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
+YVLLSN YA G W ++A+ R +MKE RK PG S I ++
Sbjct: 674 GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIR 716
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 123/414 (29%), Positives = 186/414 (44%), Gaps = 92/414 (22%)
Query: 2 GKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
G G+ H + K D++V NSL+HFY AR +FD+M R+V SW +++ Y
Sbjct: 151 GNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGY 210
Query: 60 --NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
DF+ V + F+ + E + + +T+V + SACA+LE L G+ V+ + G+E
Sbjct: 211 ARRDFAKDA-VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEV 269
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
M +AL+ MY KC +D A RLFDE G+ N+ N + + Y+ L
Sbjct: 270 NDLMVSALVDMYMKCNAIDVAKRLFDEYGA-SNLDLCNAMASNYVRQGLT---------- 318
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
EAL +F M+D GV PD M+S +S+CS L N+ +G+
Sbjct: 319 ---------------------REALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGK 357
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKC-------------------------------G 266
H ++L+N + ALIDMY KC G
Sbjct: 358 SCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENG 417
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME-RKGIKPNEATFVSVL 325
++ A TF K++V+W T+I GL L EA+ VF M+ ++G+ + T +S+
Sbjct: 418 EVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIA 477
Query: 326 AACRHSGLI-----------TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
+AC H G + G QL R+G LVD+ SR G
Sbjct: 478 SACGHLGALDLAKWIYYYIEKNGIQLDVRLG------------TTLVDMFSRCG 519
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 160/335 (47%), Gaps = 41/335 (12%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLM---SIY 59
K H +TK LD+D+ L+ L T + F K F + S+ T S+
Sbjct: 49 KMFHRSLTKQGLDNDVSTITKLVAR--SCELGTRESLSFAKEVFENSESYGTCFMYNSLI 106
Query: 60 NDFSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLE 116
++ SG E ++LF +++ GI DK T SACA+ G +H K+G
Sbjct: 107 RGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYA 166
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
L ++N+L+ YA+C E+D A ++FDEM S RN+VS
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEM-SERNVVS----------------------- 202
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI-DEGVTPDEEVMVSVLSACSSLSNLQY 235
W SM+ G + ++A++LF +M+ DE VTP+ MV V+SAC+ L +L+
Sbjct: 203 --------WTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G V+ FI + I + + +AL+DMY KC +++ A F + ++ M
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
GL EAL VF M G++P+ + +S +++C
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 110/207 (53%), Gaps = 10/207 (4%)
Query: 131 KCKEMDEALRLF----DEMGSRRNIVSLNILINGYIDM---ELVDLAREVFDEIVD-KDI 182
CK +DE L++F + G ++ ++ L+ ++ E + A+EVF+
Sbjct: 41 NCKTIDE-LKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTC 99
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
++ S++ G + EA+ LF +M++ G++PD+ LSAC+ G +H
Sbjct: 100 FMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGL 159
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
I++ +D FV+ +L+ Y++CG L+ A F + ++VV+WT+MI G A +A
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 219
Query: 303 LRVFYQMER-KGIKPNEATFVSVLAAC 328
+ +F++M R + + PN T V V++AC
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVISAC 246
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 72/159 (45%), Gaps = 1/159 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K ++ ++ K + D+ +G +L+ + R A +F+ + RDV +W +
Sbjct: 488 LAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMA 547
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
++ + LF +I +G+ D + V +AC+ + GK + K+ G+
Sbjct: 548 MAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPED 607
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
++ + + ++EA++L ++M N V N L+
Sbjct: 608 VHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLL 646
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 278 bits (711), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 151/467 (32%), Positives = 266/467 (56%), Gaps = 8/467 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIH-------FYGRMALFTDARVLFDKMPFRDVGSWNTL 55
K +H + +T L SD++V + L+ F L A +F ++ ++ +N L
Sbjct: 29 KIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLL 88
Query: 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL 115
+ ++ ++ + + Q++ I D IT L A + +E + G+ H + G
Sbjct: 89 IRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGF 148
Query: 116 EYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175
+ + +EN+L+ MYA C + A R+F +MG R ++VS ++ GY +V+ ARE+FD
Sbjct: 149 QNDVYVENSLVHMYANCGFIAAAGRIFGQMGFR-DVVSWTSMVAGYCKCGMVENAREMFD 207
Query: 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235
E+ +++ W M++G K E+A++LF+ M EGV +E VMVSV+S+C+ L L++
Sbjct: 208 EMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEF 267
Query: 236 GRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
G + +++++++T + + TAL+DM+ +CG +E+A+ F D ++W+++I+GLA
Sbjct: 268 GERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAV 327
Query: 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355
+G ++A+ F QM G P + TF +VL+AC H GL+ +G +++ M + ++P +E
Sbjct: 328 HGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLE 387
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415
H+ C+VD+L RAG L +AE FI M + ALL AC Y ++ ++V N ++K+
Sbjct: 388 HYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKV 447
Query: 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ YVLLSN YA G W ++ R MKE +K PG S+I++
Sbjct: 448 KPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEI 494
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 137/309 (44%), Gaps = 76/309 (24%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFY---------GRM-------------------- 31
+G+ H+ + + +D+YV NSL+H Y GR+
Sbjct: 135 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYC 194
Query: 32 --ALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89
+ +AR +FD+MP R++ +W+ +++ Y + + + LF+ + EG+VA++ +V
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ S+CA L L +G+ + Y K + L + AL+ M+ +C ++++A+
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAI---------- 304
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
VF+ + + D + W S++ G +A+ F +MI
Sbjct: 305 ----------------------HVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMI 342
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI-LQNNITQDAFVKTAL------IDMY 262
G P + +VLSACS +G LV + + + N+ +D ++ L +DM
Sbjct: 343 SLGFIPRDVTFTAVLSACS------HGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDML 396
Query: 263 SKCGSLEEA 271
+ G L EA
Sbjct: 397 GRAGKLAEA 405
Score = 35.8 bits (81), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM------YSKCGS-LEEALV 273
+++L +CSS S+L +++H F+L+ ++ D FV + L+ + ++K + L A
Sbjct: 16 LALLQSCSSFSDL---KIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYG 72
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
F + ++ + +I + ++A + QM + I P+ TF ++ A
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 126
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 158/460 (34%), Positives = 247/460 (53%), Gaps = 5/460 (1%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + +T D D +V LI + A +F + +V + ++ +
Sbjct: 48 IHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGR 107
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
S + + L+ ++I ++ D + + AC L + +H K+G ++
Sbjct: 108 SADGVSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLK 163
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
++ +Y K E+ A ++FDEM R + V+ ++IN Y + + A E+F ++ KD V
Sbjct: 164 MMEIYGKSGELVNAKKMFDEMPDRDH-VAATVMINCYSECGFIKEALELFQDVKIKDTVC 222
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
W +M+ G V+ K+ +ALELF++M E V+ +E V VLSACS L L+ GR VH F+
Sbjct: 223 WTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVE 282
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ FV ALI+MYS+CG + EA F KDV+++ TMI GLA +G EA+
Sbjct: 283 NQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAIN 342
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
F M +G +PN+ T V++L AC H GL+ G ++F M V+ V+P IEH+ C+VDLL
Sbjct: 343 EFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLL 402
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
R G L +A FI+ +P E I LLSAC + +LG+K+A + + N YV
Sbjct: 403 GRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYV 462
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
LLSN YA G W E E R +M++ K+PG S I++ +
Sbjct: 463 LLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDN 502
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 119/246 (48%), Gaps = 10/246 (4%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ V ++ +VGN+LI+ Y R +AR +F M +DV S+NT++S
Sbjct: 273 LGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLA 332
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV-GLEYML 119
S E + F+ ++ G +++TLV L +AC+ L G V +V +E +
Sbjct: 333 MHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQI 392
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVD-LAREVFD 175
++ + + ++EA R + + + + L L++ + +MEL + +A+ +F+
Sbjct: 393 EHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFE 452
Query: 176 -EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
E D + S ++ + + +E+ E+ + M D G+ ++E S + + +
Sbjct: 453 SENPDSGTYVLLSNLYA--SSGKWKESTEIRESMRDSGI--EKEPGCSTIEVDNQIHEFL 508
Query: 235 YGRLVH 240
G + H
Sbjct: 509 VGDIAH 514
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 22/174 (12%)
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
+ ++SVL +C +++++ +H I++ QDAFV LI + S S++ A F
Sbjct: 30 KTLISVLRSCKNIAHVPS---IHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSY 86
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR-------H 330
+V +T MI+G + G + + ++++M + P+ SVL AC H
Sbjct: 87 VSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIH 146
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
+ ++ G R +G + ++++ ++G L A++ MP D
Sbjct: 147 AQVLKLGFGSSRSVG------------LKMMEIYGKSGELVNAKKMFDEMPDRD 188
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 157/469 (33%), Positives = 268/469 (57%), Gaps = 12/469 (2%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LHAH+ K + + N+L++ YG+ + A +FD+MP RD +W ++++ N
Sbjct: 22 AKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQ 81
Query: 62 FSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ SG+ L +F + + D L ACA L + +G+ VHC+ + EY +
Sbjct: 82 ANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHF--IVSEYAND 139
Query: 121 --MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++++L+ MYAKC ++ A +FD + +N +S +++GY + A E+F +
Sbjct: 140 EVVKSSLVDMYAKCGLLNSAKAVFDSI-RVKNTISWTAMVSGYAKSGRKEEALELFRILP 198
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP-DEEVMVSVLSACSSLSNLQYGR 237
K++ W +++ G V++ + EA +F +M E V D V+ S++ AC++L+ GR
Sbjct: 199 VKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGR 258
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
VH ++ F+ ALIDMY+KC + A F + +DVV+WT++I G+A +G
Sbjct: 259 QVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHG 318
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+AL ++ M G+KPNE TFV ++ AC H G + +G +LF+ M Y ++P+++H+
Sbjct: 319 QAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHY 378
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM---K 414
CL+DLL R+GLL +AE I MP ++ ALLSAC +G ++A++++ K
Sbjct: 379 TCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFK 438
Query: 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
L + S Y+LLSN YA W +V+EARR + E++ RK PG+S ++++
Sbjct: 439 LKDPS--TYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVR 485
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 110/252 (43%), Gaps = 37/252 (14%)
Query: 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVS 153
CAR L K +H + K+G+ + N L+ +Y KC AL++FDEM R
Sbjct: 13 CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHR----- 67
Query: 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL-ELFKKMIDEG 212
D + W S++ +A + L G
Sbjct: 68 ---------------------------DHIAWASVLTALNQANLSGKTLSVFSSVGSSSG 100
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ PD+ V +++ AC++L ++ +GR VH + + D VK++L+DMY+KCG L A
Sbjct: 101 LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAK 160
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F K+ ++WT M+ G A G EAL +F + K N ++ ++++ SG
Sbjct: 161 AVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVK----NLYSWTALISGFVQSG 216
Query: 333 LITEGCQLFRRM 344
E +F M
Sbjct: 217 KGLEAFSVFTEM 228
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 34/204 (16%)
Query: 224 LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283
L C+ L + +H I++ I Q + L+++Y KCG+ AL F + +D
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69
Query: 284 VTWTTMIEGLANYGLGNEAL-RVFYQMERKGIKPNEATFVSVLAACRHSGLITEG----- 337
+ W +++ L L + L G++P++ F +++ AC + G I G
Sbjct: 70 IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129
Query: 338 -----------------------CQLFRRMGGVY---RVQPTIEHFVCLVDLLSRAGLLY 371
C L V+ RV+ TI + +V +++G
Sbjct: 130 HFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTIS-WTAMVSGYAKSGRKE 188
Query: 372 QAEEFIKIMPAEDKFISYKALLSA 395
+A E +I+P ++ + S+ AL+S
Sbjct: 189 EALELFRILPVKNLY-SWTALISG 211
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 146/464 (31%), Positives = 246/464 (53%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ + KT + YV + LI Y ++ A + + +DV SW T+++ Y
Sbjct: 508 LGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT 567
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ + L F+Q++ GI +D++ L SACA L+ L G+ +H A G L
Sbjct: 568 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 627
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+NAL+ +Y++C +++E+ F++ + NI
Sbjct: 628 FQNALVTLYSRCGKIEESYLAFEQTEAGDNIA---------------------------- 659
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
W +++ G ++ EEAL +F +M EG+ + S + A S +N++ G+ VH
Sbjct: 660 ----WNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVH 715
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I + + V ALI MY+KCGS+ +A F + K+ V+W +I + +G G+
Sbjct: 716 AVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGS 775
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL F QM ++PN T V VL+AC H GL+ +G F M Y + P EH+VC+
Sbjct: 776 EALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCV 835
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+L+RAGLL +A+EFI+ MP + + ++ LLSAC+ + ++G+ A+++++L +
Sbjct: 836 VDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDS 895
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YVLLSN YA+ W R+ MKE +K+PG S I++K+
Sbjct: 896 ATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKN 939
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 187/395 (47%), Gaps = 34/395 (8%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH V K SD YV N+L+ Y + A +F M RD ++NTL++ +
Sbjct: 306 IGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLS 365
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + LFK++ +G+ D TL L AC+ L G+ +H Y TK+G
Sbjct: 366 QCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNK 425
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+E ALL +YAKC +++ AL F E N+V N+++ Y L+D R F
Sbjct: 426 IEGALLNLYAKCADIETALDYFLET-EVENVVLWNVMLVAY---GLLDDLRNSF------ 475
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+F++M E + P++ S+L C L +L+ G +H
Sbjct: 476 ----------------------RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIH 513
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
I++ N +A+V + LIDMY+K G L+ A + KDVV+WTTMI G Y +
Sbjct: 514 SQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDD 573
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
+AL F QM +GI+ +E + ++AC + EG Q+ + V + L
Sbjct: 574 KALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQ-ACVSGFSSDLPFQNAL 632
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
V L SR G + ++ + A D I++ AL+S
Sbjct: 633 VTLYSRCGKIEESYLAFEQTEAGDN-IAWNALVSG 666
Score = 145 bits (367), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 122/471 (25%), Positives = 207/471 (43%), Gaps = 73/471 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH+ + K LDS+ + L FY A +FD+MP R + +WN ++
Sbjct: 104 GRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELAS 163
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ GEV LF +++ E + ++ T + AC V + + +
Sbjct: 164 RNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACR--------------GGSVAFDVVEQI 209
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L G R + V N LI+ Y VDLAR VFD + KD
Sbjct: 210 HARILYQ-----------------GLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKD 252
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
W +M+ G K + EA+ LF M G+ P SVLSAC + +L+ G +H
Sbjct: 253 HSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHG 312
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+L+ + D +V AL+ +Y G+L A F +D VT+ T+I GL+ G G +
Sbjct: 313 LVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEK 372
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF-----------RRMGGV--- 347
A+ +F +M G++P+ T S++ AC G + G QL ++ G
Sbjct: 373 AMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLN 432
Query: 348 -------------YRVQPTIEHFVC---------LVDLLSRAGLLYQAEEFIKIMPAEDK 385
Y ++ +E+ V L+D L + +++ + +I+P +
Sbjct: 433 LYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ-- 490
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV--LLSNFYALEG 434
+Y ++L CI + +LG+++ + ++K Q + AYV +L + YA G
Sbjct: 491 -YTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLN-AYVCSVLIDMYAKLG 539
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 107/422 (25%), Positives = 195/422 (46%), Gaps = 44/422 (10%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+HA + L V N LI Y R AR +FD + +D SW ++S +
Sbjct: 209 IHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 268
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENA 124
E + LF + GI+ + SAC ++E L G+ +H K+G + NA
Sbjct: 269 EAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNA 328
Query: 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVL 184
L+ +Y +G N++S A +F + +D V
Sbjct: 329 LVSLYF-------------HLG---NLIS----------------AEHIFSNMSQRDAVT 356
Query: 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL 244
+ ++++G + E+A+ELFK+M +G+ PD + S++ ACS+ L G+ +H +
Sbjct: 357 YNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTT 416
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE--- 301
+ + ++ AL+++Y+KC +E AL F +T+ ++VV W M L YGL ++
Sbjct: 417 KLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVM---LVAYGLLDDLRN 473
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC-- 359
+ R+F QM+ + I PN+ T+ S+L C G + G Q+ + + + + +VC
Sbjct: 474 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ---IIKTNFQLNAYVCSV 530
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
L+D+ ++ G L A + + +D +S+ +++ Y+ D M+ G +S
Sbjct: 531 LIDMYAKLGKLDTAWDILIRFAGKD-VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 589
Query: 420 HE 421
E
Sbjct: 590 DE 591
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 119/273 (43%), Gaps = 22/273 (8%)
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL---------AREVFDEIVDKDIVLW 185
+DE +L + I+ L + NG + +L D A +VFDE+ ++ I W
Sbjct: 101 LDEGRKLHSQ------ILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTW 154
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS-NLQYGRLVHRFIL 244
M+ E LF +M+ E VTP+E VL AC S +H IL
Sbjct: 155 NKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIL 214
Query: 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
+ V LID+YS+ G ++ A F KD +W MI GL+ EA+R
Sbjct: 215 YQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIR 274
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC--LVD 362
+F M GI P F SVL+AC+ + G QL G V ++ + + +VC LV
Sbjct: 275 LFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLH---GLVLKLGFSSDTYVCNALVS 331
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
L G L AE M D ++Y L++
Sbjct: 332 LYFHLGNLISAEHIFSNMSQRDA-VTYNTLING 363
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 109/253 (43%), Gaps = 42/253 (16%)
Query: 210 DEGVTPDEEVMVSVLSAC-SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+ G+ P+ + + +L C + +L GR +H IL+ + + + L D Y G L
Sbjct: 77 NRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDL 136
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
A F + + + TW MI+ LA+ L E +F +M + + PNE TF VL AC
Sbjct: 137 YGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC 196
Query: 329 R------------HSGLITEGCQ-----------LFRRMGGVYRVQPTIE--------HF 357
R H+ ++ +G + L+ R G V + + +
Sbjct: 197 RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSW 256
Query: 358 VCLVDLLSR------AGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
V ++ LS+ A L+ + IMP F S +LSAC ++G+++
Sbjct: 257 VAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSS---VLSACKKIESLEIGEQLHGL 313
Query: 412 MMKLGNQSHEAYV 424
++KLG S + YV
Sbjct: 314 VLKLGFSS-DTYV 325
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 275 bits (703), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 158/465 (33%), Positives = 249/465 (53%), Gaps = 44/465 (9%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALF--TDARVLFDKMPFRDVGSWNTLMSIYN 60
K +H H+ K L SDIYV N+LI Y R DA LF+KM RD SWN+++
Sbjct: 137 KMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLV 196
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + LF ++ +++
Sbjct: 197 KAGELRDARRLFDEMPQRDLIS-------------------------------------- 218
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE--IV 178
N +L YA+C+EM +A LF++M RN VS + ++ GY +++AR +FD+ +
Sbjct: 219 -WNTMLDGYARCREMSKAFELFEKM-PERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLP 276
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K++V W ++ G + +EA L +M+ G+ D ++S+L+AC+ L G
Sbjct: 277 AKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMR 336
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H + ++N+ +A+V AL+DMY+KCG+L++A F KD+V+W TM+ GL +G
Sbjct: 337 IHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGH 396
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
G EA+ +F +M R+GI+P++ TF++VL +C H+GLI EG F M VY + P +EH+
Sbjct: 397 GKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYG 456
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
CLVDLL R G L +A + ++ MP E + + ALL AC ++E D+ K+V +N++KL
Sbjct: 457 CLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPC 516
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y LLSN YA W VA+ R MK + K G S ++L+
Sbjct: 517 DPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELE 561
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 186/397 (46%), Gaps = 50/397 (12%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K LHA + + L D+++ LI A +F+++ +V N+L+ +
Sbjct: 36 KQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQN 95
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
S + +F ++ G+ AD T L AC+ L K +H + K+GL + +
Sbjct: 96 SQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVP 155
Query: 123 NALLLMYAKCKEMD--EALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
NAL+ Y++C + +A++LF++M S R+ VS N ++ G + + AR +FDE+ +
Sbjct: 156 NALIDCYSRCGGLGVRDAMKLFEKM-SERDTVSWNSMLGGLVKAGELRDARRLFDEMPQR 214
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D++ W +M+ G + ++ +A ELF+KM + S S + G
Sbjct: 215 DLISWNTMLDGYARCREMSKAFELFEKMPERNTV--------------SWSTMVMG---- 256
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT--DCKDVVTWTTMIEGLANYGL 298
YSK G +E A V F K K+VVTWT +I G A GL
Sbjct: 257 ---------------------YSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGL 295
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EA R+ QM G+K + A +S+LAAC SGL++ G ++ + R +V
Sbjct: 296 LKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSIL---KRSNLGSNAYV 352
Query: 359 --CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
L+D+ ++ G L +A + +P +D +S+ +L
Sbjct: 353 LNALLDMYAKCGNLKKAFDVFNDIPKKD-LVSWNTML 388
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 155/344 (45%), Gaps = 43/344 (12%)
Query: 130 AKCKEMDEALRLFDEMGSRRNIVSLNI---LINGYIDMELVDLAREVFDEIVDKDIVLWR 186
KC +++ +L ++ R L+I LI+ +LA VF+++ + ++ L
Sbjct: 27 PKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCN 86
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
S++ + QP +A +F +M G+ D +L ACS S L +++H I +
Sbjct: 87 SLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKL 146
Query: 247 NITQDAFVKTALIDMYSKCGSL--EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALR 304
++ D +V ALID YS+CG L +A+ F K +D V+W +M+ GL G +A R
Sbjct: 147 GLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARR 206
Query: 305 VFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ------------- 351
+F +M ++ + + T + A CR +++ +LF +M V
Sbjct: 207 LFDEMPQRDLI-SWNTMLDGYARCRE---MSKAFELFEKMPERNTVSWSTMVMGYSKAGD 262
Query: 352 ---------------PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED-KF--ISYKALL 393
+ + ++ + GLL +A+ + M A KF + ++L
Sbjct: 263 MEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISIL 322
Query: 394 SACITYSEFDLGKKVANNMMKLGNQSHEAYVL--LSNFYALEGH 435
+AC LG ++ ++++K N AYVL L + YA G+
Sbjct: 323 AACTESGLLSLGMRI-HSILKRSNLGSNAYVLNALLDMYAKCGN 365
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 23/193 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H+ + ++ L S+ YV N+L+ Y + A +F+ +P +D+ SWNT++
Sbjct: 333 LGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLG 392
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E + LF ++ EGI DK+T + + +C H G++Y +
Sbjct: 393 VHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCN-----------HAGLIDEGIDYFYS 441
Query: 121 ME------------NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168
ME L+ + + + EA+++ M N+V L+ VD
Sbjct: 442 MEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVD 501
Query: 169 LAREVFDEIVDKD 181
+A+EV D +V D
Sbjct: 502 IAKEVLDNLVKLD 514
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 275 bits (702), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 177/532 (33%), Positives = 262/532 (49%), Gaps = 75/532 (14%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H K D+YV SLIH Y R +AR+LFD+MP RD+GSWN ++S Y
Sbjct: 169 GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQ 228
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
++ E L L L D +T+V L SAC + G T+H Y+ K GLE L +
Sbjct: 229 SGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFV 284
Query: 122 ENALLLMYA---------------------------KCKEMDE----ALRLFDEMGSRR- 149
N L+ +YA K E++E A+ LF EM R
Sbjct: 285 SNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRI 344
Query: 150 -----NIVSL---------------------------------NILINGYIDMELVDLAR 171
++SL N ++ Y + LVD AR
Sbjct: 345 QPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSAR 404
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSL 230
VF+ + + D++ W +++ G + EA+E++ M +EG + ++ VSVL ACS
Sbjct: 405 AVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQA 464
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
L+ G +H +L+N + D FV T+L DMY KCG LE+AL FY+ + V W T+I
Sbjct: 465 GALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLI 524
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV 350
+G G +A+ +F +M +G+KP+ TFV++L+AC HSGL+ EG F M Y +
Sbjct: 525 ACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGI 584
Query: 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVAN 410
P+++H+ C+VD+ RAG L A +FIK M + + ALLSAC + DLGK +
Sbjct: 585 TPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASE 644
Query: 411 NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ ++ + +VLLSN YA G W V E R RK PG S +++
Sbjct: 645 HLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEV 696
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 174/400 (43%), Gaps = 51/400 (12%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K LHA + + ++ + L++ Y + AR FD + RDV +WN ++S Y
Sbjct: 70 AKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGR 129
Query: 62 FSDSGEVLILFKQLIF-EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+S EV+ F + G+ D T + AC + G +HC A K G + +
Sbjct: 130 AGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVY 186
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ +L+ +Y++ K + A LFDEM R
Sbjct: 187 VAASLIHLYSRYKAVGNARILFDEMPVR-------------------------------- 214
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+ W +M+ G ++ +EAL L + D +VS+LSAC+ + G +H
Sbjct: 215 DMGSWNAMISGYCQSGNAKEALTLSNGL----RAMDSVTVVSLLSACTEAGDFNRGVTIH 270
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ +++ + + FV LID+Y++ G L + F + +D+++W ++I+ Y L
Sbjct: 271 SYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKA---YELNE 327
Query: 301 EALR---VFYQMERKGIKPNEATFVSVLAACRHSGLI--TEGCQLFRRMGGVYRVQPTIE 355
+ LR +F +M I+P+ T +S+ + G I Q F G + TI
Sbjct: 328 QPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIG 387
Query: 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ V V + ++ GL+ A +P D IS+ ++S
Sbjct: 388 NAV--VVMYAKLGLVDSARAVFNWLPNTD-VISWNTIISG 424
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
+NLQ + +H ++ + Q+ + L+++Y G++ A TF +DV W MI
Sbjct: 65 TNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMI 124
Query: 291 EGLANYGLGNEALRVFYQ-MERKGIKPNEATFVSVLAACRHSGLITEGCQL------FRR 343
G G +E +R F M G+ P+ TF SVL ACR + +G ++ F
Sbjct: 125 SGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---TVIDGNKIHCLALKFGF 181
Query: 344 MGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
M VY L+ L SR + A MP D S+ A++S
Sbjct: 182 MWDVYVAAS-------LIHLYSRYKAVGNARILFDEMPVRD-MGSWNAMISG 225
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 274 bits (701), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 234/400 (58%), Gaps = 7/400 (1%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126
+ +L+ QL+ I ++ T L +C+ GK +H + K GL + L+
Sbjct: 113 QAFLLYVQLLSSEINPNEFTFSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLV 168
Query: 127 LMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWR 186
+YAK ++ A ++FD M R++VS +I Y V+ AR +FD + ++DIV W
Sbjct: 169 DVYAKGGDVVSAQKVFDRM-PERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWN 227
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
M+ G + P +AL LF+K++ EG PDE +V+ LSACS + L+ GR +H F+
Sbjct: 228 VMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKS 287
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
+ I + V T LIDMYSKCGSLEEA++ F T KD+V W MI G A +G +ALR+
Sbjct: 288 SRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRL 347
Query: 306 FYQMER-KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364
F +M+ G++P + TF+ L AC H+GL+ EG ++F MG Y ++P IEH+ CLV LL
Sbjct: 348 FNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLL 407
Query: 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424
RAG L +A E IK M + + + ++L +C + +F LGK++A ++ L ++ YV
Sbjct: 408 GRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYV 467
Query: 425 LLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
LLSN YA G + VA+ R MKE K+PG S I++++
Sbjct: 468 LLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIEN 507
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 121/270 (44%), Gaps = 42/270 (15%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGR----------------------MALFT---- 35
GK +H HV K L D YV L+ Y + A+ T
Sbjct: 145 GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAK 204
Query: 36 -----DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG-IVADKITLVI 89
AR LFD M RD+ SWN ++ Y + L+LF++L+ EG D+IT+V
Sbjct: 205 QGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVA 264
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
SAC+++ L G+ +H + + + + L+ MY+KC ++EA+ +F++ R+
Sbjct: 265 ALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDT-PRK 323
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEI-----VDKDIVLWRSMMHGCVKAKQPEEALEL 204
+IV+ N +I GY A +F+E+ + + + + C A E + +
Sbjct: 324 DIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRI 383
Query: 205 FKKMIDE-GVTPDEE---VMVSVLSACSSL 230
F+ M E G+ P E +VS+L L
Sbjct: 384 FESMGQEYGIKPKIEHYGCLVSLLGRAGQL 413
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 154/327 (47%), Gaps = 50/327 (15%)
Query: 110 ATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV------SLNI-LINGYI 162
+T + L L ++ K + +DE L++ + R N++ LN+ L Y
Sbjct: 17 STTATARFRLPPPEKLAVLIDKSQSVDEVLQIHAAI-LRHNLLLHPRYPVLNLKLHRAYA 75
Query: 163 DMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS 222
+ + +F + +D D+ L+ + ++ ++A L+ +++ + P+E S
Sbjct: 76 SHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSS 135
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL-----------EEA 271
+L +CS+ S G+L+H +L+ + D +V T L+D+Y+K G + E +
Sbjct: 136 LLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERS 191
Query: 272 LVT-------------------FYKTDC-KDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
LV+ + + C +D+V+W MI+G A +G N+AL +F ++
Sbjct: 192 LVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLA 251
Query: 312 KG-IKPNEATFVSVLAACRHSGLITEG--CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368
+G KP+E T V+ L+AC G + G +F + R++ ++ L+D+ S+ G
Sbjct: 252 EGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSS---RIRLNVKVCTGLIDMYSKCG 308
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSA 395
L +A P +D +++ A+++
Sbjct: 309 SLEEAVLVFNDTPRKD-IVAWNAMIAG 334
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 77/197 (39%), Gaps = 41/197 (20%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H V + + ++ V LI Y + +A ++F+ P +D+ +WN +++ Y
Sbjct: 278 GRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAM 337
Query: 62 FSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S + L LF ++ G+ IT + ACA GL
Sbjct: 338 HGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAH----------------AGL----- 376
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGS----RRNIVSLNILINGYIDMELVDLAREVFDE 176
++E +R+F+ MG + I L++ + A E
Sbjct: 377 --------------VNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKN 422
Query: 177 I-VDKDIVLWRSMMHGC 192
+ +D D VLW S++ C
Sbjct: 423 MNMDADSVLWSSVLGSC 439
>sp|Q9FNN9|PP370_ARATH Putative pentatricopeptide repeat-containing protein At5g08490
OS=Arabidopsis thaliana GN=PCMP-E32 PE=3 SV=1
Length = 849
Score = 273 bits (699), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 155/465 (33%), Positives = 257/465 (55%), Gaps = 5/465 (1%)
Query: 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
GK +H+++ + + L D VGN+LI FY R + A F M +D+ SWN ++ +
Sbjct: 349 GKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFA 408
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL---EY 117
D + L L L+ E I D +T++ L C ++ + K VH Y+ K GL E
Sbjct: 409 DSPKQFQFLNLLHHLLNEAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLHDEE 468
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ NALL YAKC ++ A ++F + RR +VS N L++GY++ D A+ +F E+
Sbjct: 469 EPKLGNALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLLSGYVNSGSHDDAQMLFTEM 528
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
D+ W M+ ++ P EA+ +F+++ G+ P+ ++++L C+ L++L R
Sbjct: 529 STTDLTTWSLMVRIYAESCCPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVR 588
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
H +I++ + D +K L+D+Y+KCGSL+ A F +D+V +T M+ G A +G
Sbjct: 589 QCHGYIIRGGLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHG 647
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
G EAL ++ M IKP+ ++L AC H+GLI +G Q++ + V+ ++PT+E +
Sbjct: 648 RGKEALMIYSHMTESNIKPDHVFITTMLTACCHAGLIQDGLQIYDSIRTVHGMKPTMEQY 707
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C VDL++R G L A F+ MP E + LL AC TY+ DLG VAN++++ +
Sbjct: 708 ACAVDLIARGGRLDDAYSFVTQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAES 767
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+VL+SN YA + W V E R MK+ + +K G S +++
Sbjct: 768 DDTGNHVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEV 812
Score = 125 bits (313), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 100/388 (25%), Positives = 194/388 (50%), Gaps = 28/388 (7%)
Query: 2 GKGLHAHVT-KTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +H++V ++ L + ++V NSL+ FY R+ +A LF +M +D+ SWN +++ Y
Sbjct: 246 GRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYA 305
Query: 61 DFSDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ + LF L+ +G V+ D +T++ + CA+L L GK +H Y + Y+L
Sbjct: 306 SNCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILR--HSYLL 363
Query: 120 ---NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYID----MELVDLARE 172
++ NAL+ YA+ + A F M S ++I+S N +++ + D + ++L
Sbjct: 364 EDTSVGNALISFYARFGDTSAAYWAFSLM-STKDIISWNAILDAFADSPKQFQFLNLLHH 422
Query: 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE---VMVSVLSACSS 229
+ +E + D V S++ C+ + + E+ + G+ DEE + ++L A +
Sbjct: 423 LLNEAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLHDEEEPKLGNALLDAYAK 482
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
N++Y H+ L + + +L+ Y GS ++A + F + D+ TW+ M
Sbjct: 483 CGNVEYA---HKIFLGLSERRTLVSYNSLLSGYVNSGSHDDAQMLFTEMSTTDLTTWSLM 539
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH--SGLITEGCQLFRRMGGV 347
+ A NEA+ VF +++ +G++PN T +++L C S + C + GG+
Sbjct: 540 VRIYAESCCPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGGL 599
Query: 348 --YRVQPTIEHFVCLVDLLSRAGLLYQA 373
R++ T L+D+ ++ G L A
Sbjct: 600 GDIRLKGT------LLDVYAKCGSLKHA 621
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 151/333 (45%), Gaps = 38/333 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH V K + V S+++ Y + D + +F +M D WN +++ +
Sbjct: 40 GRALHGCVFKLGHIACSEVSKSVLNMYAKCRRMDDCQKMFRQMDSLDPVVWNIVLTGLS- 98
Query: 62 FSDSGEVLILFKQLIF-EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
S E + FK + F + +T I+ C RL + GK++H Y K GLE
Sbjct: 99 VSCGRETMRFFKAMHFADEPKPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTL 158
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAK G+I + A FD I DK
Sbjct: 159 VGNALVSMYAKF---------------------------GFIFPD----AYTAFDGIADK 187
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN---LQYGR 237
D+V W +++ G + +A F M+ E P+ + +VL C+S+ + GR
Sbjct: 188 DVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKNIACRSGR 247
Query: 238 LVHRFILQNNITQD-AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
+H +++Q + Q FV +L+ Y + G +EEA F + KD+V+W +I G A+
Sbjct: 248 QIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASN 307
Query: 297 GLGNEALRVFYQMERKG-IKPNEATFVSVLAAC 328
+A ++F+ + KG + P+ T +S+L C
Sbjct: 308 CEWFKAFQLFHNLVHKGDVSPDSVTIISILPVC 340
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 153/359 (42%), Gaps = 43/359 (11%)
Query: 76 IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135
+ G D + + ACA + L G+ +H K+G + ++L MYAKC+ M
Sbjct: 13 LLSGFGTDHRVFLDVVKACASVSDLTSGRALHGCVFKLGHIACSEVSKSVLNMYAKCRRM 72
Query: 136 DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195
D+ ++F +M S D V+W ++ G +
Sbjct: 73 DDCQKMFRQMDSL--------------------------------DPVVWNIVLTG-LSV 99
Query: 196 KQPEEALELFKKM--IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
E + FK M DE P VL C L + G+ +H +I++ + +D
Sbjct: 100 SCGRETMRFFKAMHFADEP-KPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTL 158
Query: 254 VKTALIDMYSKCGSL-EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312
V AL+ MY+K G + +A F KDVV+W +I G + + +A R F M ++
Sbjct: 159 VGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKE 218
Query: 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG--VYRVQPTIEHFVC--LVDLLSRAG 368
+PN AT +VL C S C+ R++ V R FVC LV R G
Sbjct: 219 PTEPNYATIANVLPVCA-SMDKNIACRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVG 277
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427
+ +A M ++D +S+ +++ + E+ ++ +N++ G+ S ++ ++S
Sbjct: 278 RIEEAASLFTRMGSKD-LVSWNVVIAGYASNCEWFKAFQLFHNLVHKGDVSPDSVTIIS 335
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 273 bits (699), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 243/459 (52%), Gaps = 33/459 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
+H K LD D YV SL+ Y ++ A+ +FD++P R+ W LM Y +S
Sbjct: 131 IHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSK 190
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLNMEN 123
EV LF + G+ D +TL+ L AC + GK VH + + ++ ++
Sbjct: 191 DPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQA 250
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
+++ MY KC+ +D A +LF E RN+V
Sbjct: 251 SIIDMYVKCRLLDNARKLF-ETSVDRNVV------------------------------- 278
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
+W +++ G K ++ EA +LF++M+ E + P++ + ++L +CSSL +L++G+ VH ++
Sbjct: 279 MWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYM 338
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++N I DA T+ IDMY++CG+++ A F ++V++W++MI GL EAL
Sbjct: 339 IRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEAL 398
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
F++M+ + + PN TFVS+L+AC HSG + EG + F M Y V P EH+ C+VDL
Sbjct: 399 DCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDL 458
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
L RAG + +A+ FI MP + ++ ALLSAC + E DL ++A ++ + + Y
Sbjct: 459 LGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSMEPEKSSVY 518
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
VLLSN YA G W V RR M RK G S ++
Sbjct: 519 VLLSNIYADAGMWEMVNCVRRKMGIKGYRKHVGQSATEV 557
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 7/224 (3%)
Query: 1 MGKGLHA-HVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+GK +H + ++ +D Y+ S+I Y + L +AR LF+ R+V W TL+S +
Sbjct: 228 VGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGF 287
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
+ E LF+Q++ E I+ ++ TL + +C+ L L +GK+VH Y + G+E
Sbjct: 288 AKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDA 347
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ + MYA+C + A +FD M RN++S + +IN + L + A + F ++
Sbjct: 348 VNFTSFIDMYARCGNIQMARTVFDMM-PERNVISWSSMINAFGINGLFEEALDCFHKMKS 406
Query: 180 KDI----VLWRSMMHGCVKAKQPEEALELFKKMI-DEGVTPDEE 218
+++ V + S++ C + +E + F+ M D GV P+EE
Sbjct: 407 QNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEE 450
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 104/217 (47%), Gaps = 7/217 (3%)
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNILINGYIDMELVDLAREVFD 175
+N ALL + ++ K ++ ++ ++ G +V + L N YI +D A F+
Sbjct: 4 VNRARALLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFN 63
Query: 176 EIV--DKDIVLWRSMMHGCVKAKQP--EEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
I ++ W +++ G K+K + L L+ +M D +V + AC L
Sbjct: 64 RIPCWKRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLG 123
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L+ G L+H ++N + +D +V +L++MY++ G++E A F + ++ V W +++
Sbjct: 124 LLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMK 183
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
G Y E R+F M G+ + T + ++ AC
Sbjct: 184 GYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKAC 220
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 272 bits (695), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 246/464 (53%), Gaps = 33/464 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ K + N+L+ Y + A+ +F +M R V S+ ++++ Y
Sbjct: 314 LGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYA 373
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+GE + LF+++ EGI D T+ + + CAR L GK VH + + L + +
Sbjct: 374 REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIF 433
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC M EA +F EM ++I+S N +I GY
Sbjct: 434 VSNALMDMYAKCGSMQEAELVFSEM-RVKDIISWNTIIGGY------------------- 473
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLV 239
K EAL LF +++E +PDE + VL AC+SLS GR +
Sbjct: 474 ------------SKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREI 521
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I++N D V +L+DMY+KCG+L A + F KD+V+WT MI G +G G
Sbjct: 522 HGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFG 581
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA+ +F QM + GI+ +E +FVS+L AC HSGL+ EG + F M +++PT+EH+ C
Sbjct: 582 KEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYAC 641
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VD+L+R G L +A FI+ MP + ALL C + + L +KVA + +L ++
Sbjct: 642 IVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPEN 701
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVL++N YA W +V R+ + + RK PG S I++K
Sbjct: 702 TGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIK 745
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/428 (31%), Positives = 212/428 (49%), Gaps = 49/428 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
G+ LH + K+ VGNSL+ FY + AR +FD+M RDV SWN++++ Y
Sbjct: 214 GEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 273
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
N ++ G L +F Q++ GI D T+V +F+ CA + G+ VH K
Sbjct: 274 NGLAEKG--LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 331
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N LL MY+KC ++D A +F EM S R++VS +I GY ARE
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKAVFREM-SDRSVVSYTSMIAGY--------AREGL----- 377
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
EA++LF++M +EG++PD + +VL+ C+ L G+ V
Sbjct: 378 ------------------AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 419
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I +N++ D FV AL+DMY+KCGS++EA + F + KD+++W T+I G +
Sbjct: 420 HEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYA 479
Query: 300 NEALRVF-YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
NEAL +F +E K P+E T VL AC +G ++ G + R + V
Sbjct: 480 NEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIH---GYIMRNGYFSDRHV 536
Query: 359 C--LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA---NNMM 413
LVD+ ++ G L A + ++D +S+ +++ Y GK+ N M
Sbjct: 537 ANSLVDMYAKCGALLLAHMLFDDIASKD-LVSWTVMIAG---YGMHGFGKEAIALFNQMR 592
Query: 414 KLGNQSHE 421
+ G ++ E
Sbjct: 593 QAGIEADE 600
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 185/399 (46%), Gaps = 44/399 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK + + D +G+ L Y +A +FD++ WN LM N+
Sbjct: 113 GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILM---NE 169
Query: 62 FSDSGEV---LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
+ SG+ + LFK+++ G+ D T + + + L +H G+ +H + K G
Sbjct: 170 LAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGF--- 226
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
RN V N L+ Y+ + VD AR+VFDE+
Sbjct: 227 ----------------------------GERNSVG-NSLVAFYLKNQRVDSARKVFDEMT 257
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
++D++ W S+++G V E+ L +F +M+ G+ D +VSV + C+ + GR
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA 317
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
VH ++ +++ L+DMYSKCG L+ A F + + VV++T+MI G A GL
Sbjct: 318 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGL 377
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
EA+++F +ME +GI P+ T +VL C L+ EG ++ + + FV
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE---WIKENDLGFDIFV 434
Query: 359 --CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
L+D+ ++ G + +AE M +D IS+ ++
Sbjct: 435 SNALMDMYAKCGSMQEAELVFSEMRVKD-IISWNTIIGG 472
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 157/362 (43%), Gaps = 44/362 (12%)
Query: 36 DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV-ADKITLVILFSAC 94
D+ FD R V NT + F +SG + K L G D TL + C
Sbjct: 52 DSITTFD----RSVTDANTQL---RRFCESGNLENAVKLLCVSGKWDIDPRTLCSVLQLC 104
Query: 95 ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSL 154
A + L GK V + G N+ + L LMY C ++ EA R+FDE
Sbjct: 105 ADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDE---------- 154
Query: 155 NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214
V + + +F W +M+ K+ ++ LFKKM+ GV
Sbjct: 155 ------------VKIEKALF----------WNILMNELAKSGDFSGSIGLFKKMMSSGVE 192
Query: 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274
D V + SSL ++ G +H FIL++ + V +L+ Y K ++ A
Sbjct: 193 MDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKV 252
Query: 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334
F + +DV++W ++I G + GL + L VF QM GI+ + AT VSV A C S LI
Sbjct: 253 FDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLI 312
Query: 335 TEGCQLFRRMGGVYRVQPTIEHFV-CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
+ G + GV + F L+D+ S+ G L A+ + M ++ +SY +++
Sbjct: 313 SLGRAVHSI--GVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREM-SDRSVVSYTSMI 369
Query: 394 SA 395
+
Sbjct: 370 AG 371
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 271 bits (694), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 146/414 (35%), Positives = 239/414 (57%), Gaps = 5/414 (1%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN ++ +++ + + + ++ Q++ G++ D +T L + +RL G ++HC
Sbjct: 76 WNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVV 135
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K GLE+ L + N L+ MY ++ A +LFDEM +N+V+ N +++ Y V AR
Sbjct: 136 KSGLEWDLFICNTLIHMYGSFRDQASARKLFDEM-PHKNLVTWNSILDAYAKSGDVVSAR 194
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV-MVSVLSACSSL 230
VFDE+ ++D+V W SM+ G VK + +ALE+F +M+ G + EV MVSV+ AC+ L
Sbjct: 195 LVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHL 254
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK--DVVTWTT 288
L G+ VHR+IL ++ ++T+LIDMY+KCGS+ +A FY+ K D + W
Sbjct: 255 GALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNA 314
Query: 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348
+I GLA++G E+L++F++M I P+E TF+ +LAAC H GL+ E F+ +
Sbjct: 315 IIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKES- 373
Query: 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408
+P EH+ C+VD+LSRAGL+ A +FI MP + ALL+ CI + +L + V
Sbjct: 374 GAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAETV 433
Query: 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+++L + YV L+N YA+ + R M++ +K G+SI+DL
Sbjct: 434 GKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDL 487
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 165/378 (43%), Gaps = 59/378 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G LH V K+ L+ D+++ N+LIH YG AR LFD+MP +++ +WN+++ Y
Sbjct: 126 LGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYA 185
Query: 61 DFSDSGEVLILFKQL--------------------------IFEGIV------ADKITLV 88
D ++F ++ IF+ ++ A+++T+V
Sbjct: 186 KSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMV 245
Query: 89 ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSR 148
+ ACA L L+ GKTVH Y V L + ++ +L+ MYAKC + +A +F +
Sbjct: 246 SVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVK 305
Query: 149 R-NIVSLNILINGYIDMELVDLAREVFDEI----VDKDIVLWRSMMHGCVKAKQPEEALE 203
+ + N +I G + + ++F ++ +D D + + ++ C +EA
Sbjct: 306 ETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWH 365
Query: 204 LFKKMIDEGVTPDEE---VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
FK + + G P E MV VLS + + H FI + I + AL++
Sbjct: 366 FFKSLKESGAEPKSEHYACMVDVLSRAGLVKD------AHDFISEMPIKPTGSMLGALLN 419
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIE----GLANYGLGNEALRVFYQ----MERK 312
G+LE A +T K ++ + GLAN N+ R ME+K
Sbjct: 420 GCINHGNLELA-----ETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKK 474
Query: 313 GIKPNEATFVSVLAACRH 330
G+K + L RH
Sbjct: 475 GVKKIAGHSILDLDGTRH 492
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 127/296 (42%), Gaps = 41/296 (13%)
Query: 118 MLNMENALL---LMYAKCKEMDEALRLFD-----EMGSRRNIVSLNILINGYIDMELVDL 169
ML ++L+ ++ +CK M E ++ + VS + + VD
Sbjct: 1 MLKSSSSLVAKSILRHQCKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDY 60
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A + ++ D W ++ G ++ PE+++ ++ +M+ G+ PD ++ + S
Sbjct: 61 AYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSR 120
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTW--- 286
LSN + G +H ++++ + D F+ LI MY A F + K++VTW
Sbjct: 121 LSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSI 180
Query: 287 ----------------------------TTMIEGLANYGLGNEALRVFYQMERKG-IKPN 317
++MI+G G N+AL +F QM R G K N
Sbjct: 181 LDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKAN 240
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
E T VSV+ AC H G + G + R + V+ + T+ L+D+ ++ G + A
Sbjct: 241 EVTMVSVICACAHLGALNRGKTVHRYILDVH-LPLTVILQTSLIDMYAKCGSIGDA 295
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 271 bits (694), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 158/467 (33%), Positives = 242/467 (51%), Gaps = 36/467 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +H V + L I V N+L++ Y + +AR +FD+M RDV +W +++ Y
Sbjct: 236 MGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYT 295
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ D L L + + FEG+ + +T+ L S C K++ GK +H +A + + +
Sbjct: 296 EDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDII 355
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+E +L+ MYAKCK VDL VF
Sbjct: 356 IETSLISMYAKCKR--------------------------------VDLCFRVFSGASKY 383
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
W +++ GCV+ + +AL LFK+M E V P+ + S+L A ++L++L+ +H
Sbjct: 384 HTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIH 443
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY----KTDCKDVVTWTTMIEGLANY 296
++ + T L+ +YSKCG+LE A F K KDVV W +I G +
Sbjct: 444 CYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMH 503
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G G+ AL+VF +M R G+ PNE TF S L AC HSGL+ EG LFR M Y+ H
Sbjct: 504 GDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNH 563
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+VDLL RAG L +A I +P E + ALL+AC+T+ LG+ AN + +L
Sbjct: 564 YTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELE 623
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++ YVLL+N YA G W ++ + R M+ + RKKPG+S I+++
Sbjct: 624 PENTGNYVLLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTIEIR 670
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 158/327 (48%), Gaps = 32/327 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +H + ++ D YV N+L+ Y AR +FD M RDV SWNT++S Y
Sbjct: 135 LGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYY 194
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L++F ++ E + D T+V + C L+ L G+ VH + L +
Sbjct: 195 RNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIE 254
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++NAL+ MY KC MDEA +FD M RR++++ +INGY + D
Sbjct: 255 VKNALVNMYLKCGRMDEARFVFDRM-ERRDVITWTCMINGYTE---------------DG 298
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+ E ALEL + M EGV P+ + S++S C + G+ +H
Sbjct: 299 DV----------------ENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLH 342
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ ++ + D ++T+LI MY+KC ++ F W+ +I G L +
Sbjct: 343 GWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVS 402
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAA 327
+AL +F +M R+ ++PN AT S+L A
Sbjct: 403 DALGLFKRMRREDVEPNIATLNSLLPA 429
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 161/337 (47%), Gaps = 35/337 (10%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K LH HV S ++ ++L Y T AR LF++MP + S+N ++ +Y
Sbjct: 35 KALHCHVITGGRVSG-HILSTLSVTYALCGHITYARKLFEEMPQSSLLSYNIVIRMYVRE 93
Query: 63 SDSGEVLILFKQLIFEGI--VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + +F +++ EG+ V D T + A L+ + G VH +
Sbjct: 94 GLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKY 153
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++NALL MY ++ V++AR+VFD + ++
Sbjct: 154 VQNALLAMY--------------------------------MNFGKVEMARDVFDVMKNR 181
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D++ W +M+ G + +AL +F M++E V D +VS+L C L +L+ GR VH
Sbjct: 182 DVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVH 241
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + + + VK AL++MY KCG ++EA F + + +DV+TWT MI G G
Sbjct: 242 KLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVE 301
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
AL + M+ +G++PN T S+++ C + + +G
Sbjct: 302 NALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDG 338
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 271 bits (693), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 164/497 (32%), Positives = 249/497 (50%), Gaps = 38/497 (7%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
+ +H+ + L + +G L+ Y + AR +FD++P R+V N ++ Y +
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
GE + +F + + D T + AC+ + G+ +H ATKVGL L +
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV--------- 173
N L+ MY KC + EA + DEM SRR++VS N L+ GY + D A EV
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEM-SRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKI 237
Query: 174 ----------------------------FDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205
F ++ K +V W M+ +K P EA+EL+
Sbjct: 238 SHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELY 297
Query: 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265
+M +G PD + SVL AC S L G+ +H +I + + + ++ ALIDMY+KC
Sbjct: 298 SRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKC 357
Query: 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325
G LE+A F +DVV+WT MI G G +A+ +F +++ G+ P+ FV+ L
Sbjct: 358 GCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTL 417
Query: 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK 385
AAC H+GL+ EG F+ M Y++ P +EH C+VDLL RAG + +A FI+ M E
Sbjct: 418 AACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPN 477
Query: 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445
+ ALL AC +S+ D+G A+ + +L + YVLLSN YA G W EV R
Sbjct: 478 ERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNI 537
Query: 446 MKELQTRKKPGNSIIDL 462
MK +K PG S +++
Sbjct: 538 MKSKGLKKNPGASNVEV 554
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 161/372 (43%), Gaps = 78/372 (20%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H TK L S ++VGN L+ YG+ ++AR++ D+M RDV SWN+L+ Y
Sbjct: 158 IGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYA 217
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR--LEKLHYGKTVHCYATKVGLEYM 118
+ L + +++ I D T+ L A + E + Y K + K+G + +
Sbjct: 218 QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMF---FKMGKKSL 274
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNIL---------------ING 160
++ N ++ +Y K EA+ L+ M G + VS+ + I+G
Sbjct: 275 VSW-NVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 333
Query: 161 YIDME-----------LVDL---------AREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200
YI+ + L+D+ AR+VF+ + +D+V W +M+ + + +
Sbjct: 334 YIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCD 393
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
A+ LF K+ D G+ PD V+ L+ACS L+ GR + + D
Sbjct: 394 AVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKL---------------MTD 438
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320
Y LE M++ L G EA R M ++PNE
Sbjct: 439 HYKITPRLEH---------------LACMVDLLGRAGKVKEAYRFIQDM---SMEPNERV 480
Query: 321 FVSVLAACR-HS 331
+ ++L ACR HS
Sbjct: 481 WGALLGACRVHS 492
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 110/253 (43%), Gaps = 25/253 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H ++ + L ++ + N+LI Y + AR +F+ M RDV SW ++S Y
Sbjct: 327 LGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYG 386
Query: 61 DFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-----VHCYATKVG 114
FS G + + LF +L G+V D I V +AC+ L G++ Y
Sbjct: 387 -FSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPR 445
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLAR 171
LE++ M + L + ++ EA R +M N L+ + D ++ LA
Sbjct: 446 LEHLACMVDLL----GRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAA 501
Query: 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231
+ ++ + + + + KA + EE + M +G+ + S
Sbjct: 502 DKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKN-----------PGAS 550
Query: 232 NLQYGRLVHRFIL 244
N++ R++H F++
Sbjct: 551 NVEVNRIIHTFLV 563
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 159/463 (34%), Positives = 257/463 (55%), Gaps = 4/463 (0%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFY-GRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
K +HA + KT L SD + ++ F + A ++F ++ ++ WNT++ ++
Sbjct: 42 KQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSR 101
Query: 62 FSDSGEVLILFKQLIFEG--IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
S + +F ++ + ++T +F A RL + G+ +H K GLE
Sbjct: 102 SSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDS 161
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
+ N +L MY C + EA R+F M ++V+ N +I G+ L+D A+ +FDE+
Sbjct: 162 FIRNTMLHMYVTCGCLIEAWRIFLGMIGF-DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQ 220
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
++ V W SM+ G V+ + ++AL++F++M ++ V PD MVS+L+AC+ L + GR +
Sbjct: 221 RNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWI 280
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I++N ++ V TALIDMY KCG +EE L F K + W +MI GLAN G
Sbjct: 281 HEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFE 340
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
A+ +F ++ER G++P+ +F+ VL AC HSG + + FR M Y ++P+I+H+
Sbjct: 341 ERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTL 400
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+V++L AGLL +AE IK MP E+ + + +LLSAC ++ K+ A + KL
Sbjct: 401 MVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDE 460
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLLSN YA G + E E R MKE Q K+ G S I++
Sbjct: 461 TCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEV 503
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 99/424 (23%), Positives = 178/424 (41%), Gaps = 59/424 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY-------------------------------GR 30
G+ LH V K L+ D ++ N+++H Y +
Sbjct: 145 GRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAK 204
Query: 31 MALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
L A+ LFD+MP R+ SWN+++S + + L +F+++ + + D T+V L
Sbjct: 205 CGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSL 264
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
+ACA L G+ +H Y + E + AL+ MY KC ++E L +F E ++
Sbjct: 265 LNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVF-ECAPKKQ 323
Query: 151 IVSLNILINGYIDMELVDLAREVFDEI----VDKDIVLWRSMMHGCVKAKQPEEALELFK 206
+ N +I G + + A ++F E+ ++ D V + ++ C + + A E F+
Sbjct: 324 LSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFR 383
Query: 207 KMID----EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
M + E +MV+VL L + I + +D + ++L+
Sbjct: 384 LMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAE------ALIKNMPVEEDTVIWSSLLSAC 437
Query: 263 SKCGSLE---EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL--RVFY---QMERK-G 313
K G++E A K D + + + A+YGL EA+ R+ QME++ G
Sbjct: 438 RKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVG 497
Query: 314 IKPNEATF-VSVLAACRHSGLITEGCQLFRRMGGV-YRVQPTIEHFVCLVDLLSRAGLLY 371
E F V +C G + +++ + + + V F L D +R G Y
Sbjct: 498 CSSIEVDFEVHEFISC--GGTHPKSAEIYSLLDILNWDVSTIKSGFAELFDATTRIGFTY 555
Query: 372 QAEE 375
AE+
Sbjct: 556 LAEK 559
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/497 (32%), Positives = 260/497 (52%), Gaps = 40/497 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHF--YGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
K +HA + L S++ V LI+ A LFD++P DV N ++
Sbjct: 29 KQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSA 88
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + L+ ++ G+ D+ T + AC++LE G H + G
Sbjct: 89 QSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEY 148
Query: 121 MENALLLMYAKCKEM-------------------------------DEALRLFDEMGSRR 149
++NAL+L +A C ++ DEA+RLFDEM +
Sbjct: 149 VKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEM-PYK 207
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
+ V+ N++I G + + +D ARE+FD +KD+V W +M+ G V P+EAL +FK+M
Sbjct: 208 DQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMR 267
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKT----ALIDMYSK 264
D G PD ++S+LSAC+ L +L+ G+ +H +IL+ +++ +V T ALIDMY+K
Sbjct: 268 DAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAK 327
Query: 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324
CGS++ A+ F +D+ TW T+I GLA + ++ +F +M+R + PNE TF+ V
Sbjct: 328 CGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHH-AEGSIEMFEEMQRLKVWPNEVTFIGV 386
Query: 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED 384
+ AC HSG + EG + F M +Y ++P I+H+ C+VD+L RAG L +A F++ M E
Sbjct: 387 ILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEP 446
Query: 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444
I ++ LL AC Y +LGK ++ + YVLLSN YA G W V + R+
Sbjct: 447 NAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRK 506
Query: 445 NMKELQTRKKPGNSIID 461
+ + +K G S+I+
Sbjct: 507 MFDDTRVKKPTGVSLIE 523
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 159/422 (37%), Gaps = 105/422 (24%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHF-------------------------------YGR 30
G H V + + YV N+LI F Y +
Sbjct: 131 GFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAK 190
Query: 31 MALFTDARVLFDKMPF-------------------------------RDVGSWNTLMSIY 59
+A LFD+MP+ +DV +WN ++S Y
Sbjct: 191 RGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGY 250
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCY-----ATKVG 114
+ E L +FK++ G D +T++ L SACA L L GK +H Y +
Sbjct: 251 VNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSS 310
Query: 115 LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF 174
+ + NAL+ MYAKC +D A+ EVF
Sbjct: 311 IYVGTPIWNALIDMYAKCGSIDRAI--------------------------------EVF 338
Query: 175 DEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234
+ D+D+ W +++ G + E ++E+F++M V P+E + V+ ACS +
Sbjct: 339 RGVKDRDLSTWNTLIVG-LALHHAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVD 397
Query: 235 YGRLVHRFILQ-NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMIEG 292
GR + NI + ++DM + G LEEA + + + + W T++
Sbjct: 398 EGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGA 457
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV-Q 351
Y GN L + + ++ +E+ +L+ S +G Q R+M RV +
Sbjct: 458 CKIY--GNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKK 515
Query: 352 PT 353
PT
Sbjct: 516 PT 517
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 232 NLQYGRLVHRFILQNNITQDAFVKTALI--DMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
N++ + +H ++ N + + V LI S G+L+ A F + DV +
Sbjct: 24 NIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHV 83
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
+ G A + + ++ +ME++G+ P+ TF VL AC
Sbjct: 84 LRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKAC 122
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 270 bits (691), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 167/535 (31%), Positives = 266/535 (49%), Gaps = 71/535 (13%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG H+ + K L +++VGN+L+ Y + DAR +F++M RD +WNT++ Y
Sbjct: 446 MGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYV 505
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E LFK++ GIV+D L AC + L+ GK VHC + K GL+ L+
Sbjct: 506 QDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLH 565
Query: 121 MENALLLMYAKC------------------------------KEMDEALRLFDEMGSR-- 148
++L+ MY+KC ++EA+ LF EM +R
Sbjct: 566 TGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNLEEAVVLFQEMLTRGV 625
Query: 149 ----------------RNIVSLNILING------------YIDMELVDL---------AR 171
++L +G Y+ + L+ + A
Sbjct: 626 NPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEAC 685
Query: 172 EVFDEIVD-KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230
+F E+ K IVLW MM G + EEAL+ +K+M +GV PD+ V+VL CS L
Sbjct: 686 ALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVL 745
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTM 289
S+L+ GR +H I D LIDMY+KCG ++ + F + + +VV+W ++
Sbjct: 746 SSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSL 805
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
I G A G +AL++F M + I P+E TF+ VL AC H+G +++G ++F M G Y
Sbjct: 806 INGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYG 865
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
++ ++H C+VDLL R G L +A++FI+ + + +LL AC + + G+ A
Sbjct: 866 IEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISA 925
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+++L Q+ AYVLLSN YA +G W + R+ M++ +K PG S ID++
Sbjct: 926 EKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQ 980
Score = 171 bits (434), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 123/448 (27%), Positives = 211/448 (47%), Gaps = 45/448 (10%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H+ +DS+ +GN+++ Y + A + A FD + +DV +WN+++S+Y+
Sbjct: 78 IGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYS 136
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
G+VL F L I +K T I+ S CAR + +G+ +HC K+GLE
Sbjct: 137 SIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSY 196
Query: 121 MENALLLMYAKCKEMDEALRLFD----------------------------------EMG 146
AL+ MYAKC + +A R+F+ + G
Sbjct: 197 CGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEG 256
Query: 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFK 206
R + ++ +IN YI + + AR +F E+ D+V W M+ G K A+E F
Sbjct: 257 HRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFF 316
Query: 207 KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266
M V + SVLSA ++NL G +VH ++ + + +V ++L+ MYSKC
Sbjct: 317 NMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCE 376
Query: 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+E A F + K+ V W MI G A+ G ++ + +F M+ G ++ TF S+L+
Sbjct: 377 KMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLS 436
Query: 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAED 384
C S + G Q F + + + + FV LVD+ ++ G L A + + M D
Sbjct: 437 TCAASHDLEMGSQ-FHSI--IIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRD 493
Query: 385 KFISYKALLSACIT----YSEFDLGKKV 408
+++ ++ + + FDL K++
Sbjct: 494 N-VTWNTIIGSYVQDENESEAFDLFKRM 520
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 157/340 (46%), Gaps = 33/340 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G +HA K L S+IYVG+SL+ Y + A +F+ + ++ WN ++ Y
Sbjct: 345 LGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYA 404
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+S +V+ LF + G D T L S CA L G H K L L
Sbjct: 405 HNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLF 464
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MYAKC +++A ++F+ M R N
Sbjct: 465 VGNALVDMYAKCGALEDARQIFERMCDRDN------------------------------ 494
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
V W +++ V+ + EA +LFK+M G+ D + S L AC+ + L G+ VH
Sbjct: 495 --VTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVH 552
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ + +D ++LIDMYSKCG +++A F VV+ +I G + L
Sbjct: 553 CLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNL-E 611
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
EA+ +F +M +G+ P+E TF +++ AC +T G Q
Sbjct: 612 EAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQF 651
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 105/388 (27%), Positives = 182/388 (46%), Gaps = 41/388 (10%)
Query: 23 SLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVA 82
++I+ Y R+ DAR+LF +M DV +WN ++S + + F + + +
Sbjct: 266 TVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKS 325
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
+ TL + SA + L G VH A K+GL + + ++L+ MY+KC++M+ A +
Sbjct: 326 TRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAK-- 383
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
VF+ + +K+ V W +M+ G + + +
Sbjct: 384 ------------------------------VFEALEEKNDVFWNAMIRGYAHNGESHKVM 413
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
ELF M G D+ S+LS C++ +L+ G H I++ + ++ FV AL+DMY
Sbjct: 414 ELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMY 473
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
+KCG+LE+A F + +D VTW T+I +EA +F +M GI + A
Sbjct: 474 AKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLA 533
Query: 323 SVLAACRHSGLITEGCQL--FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380
S L AC H + +G Q+ G+ R + L+D+ S+ G++ A + +
Sbjct: 534 STLKACTHVHGLYQGKQVHCLSVKCGLDR---DLHTGSSLIDMYSKCGIIKDARKVFSSL 590
Query: 381 PAEDKFISYKALLSACITYSEFDLGKKV 408
P E +S AL++ YS+ +L + V
Sbjct: 591 P-EWSVVSMNALIAG---YSQNNLEEAV 614
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 49/334 (14%)
Query: 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159
L GK VH + +G++ + NA++ +YAKC ++ A + FD
Sbjct: 76 LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFD---------------- 119
Query: 160 GYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219
++KD+ W SM+ +P + L F + + + P++
Sbjct: 120 -----------------FLEKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFT 162
Query: 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279
VLS C+ +N+++GR +H +++ + ++++ AL+DMY+KC + +A F
Sbjct: 163 FSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIV 222
Query: 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339
+ V WT + G GL EA+ VF +M +G +P+ FV+V+ G + +
Sbjct: 223 DPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARL 282
Query: 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF---IKIMPAEDKFISYKALLSAC 396
LF M P + + ++ + G A E+ ++ + + ++LSA
Sbjct: 283 LFGEMS-----SPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAI 337
Query: 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430
+ DLG V +KLG L SN Y
Sbjct: 338 GIVANLDLGLVVHAEAIKLG--------LASNIY 363
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/463 (32%), Positives = 257/463 (55%), Gaps = 24/463 (5%)
Query: 2 GKGLHAHVTKT-ALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
GK LHA+ K +LD + +VG++L+ Y R +FD M R +G WN +++ Y+
Sbjct: 321 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 380
Query: 61 DFSDSGEVLILFKQLI-FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L+LF + G++A+ T+ + AC R + +H + K GL+
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 440
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
++N L+ MY++ ++D A+R+F +M R++V+ N +I GY VF E +
Sbjct: 441 FVQNTLMDMYSRLGKIDIAMRIFGKM-EDRDLVTWNTMITGY-----------VFSEHHE 488
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
++L M + K + + L P+ ++++L +C++LS L G+ +
Sbjct: 489 DALLLLHKMQNLERKVSKGASRVSL---------KPNSITLMTILPSCAALSALAKGKEI 539
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + ++NN+ D V +AL+DMY+KCG L+ + F + K+V+TW +I +G G
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 599
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
EA+ + M +G+KPNE TF+SV AAC HSG++ EG ++F M Y V+P+ +H+ C
Sbjct: 600 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 659
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAE-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
+VDLL RAG + +A + + +MP + +K ++ +LL A ++ ++G+ A N+++L
Sbjct: 660 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN 719
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
YVLL+N Y+ G W + E RRNMKE RK+PG S I+
Sbjct: 720 VASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762
Score = 142 bits (358), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 173/378 (45%), Gaps = 48/378 (12%)
Query: 1 MGKGLHAHVTKTALDSD-IYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
+GK +HAHV K D + V N+L++ Y + F +FD++ R+ SWN+L+S
Sbjct: 115 LGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSL 174
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL---EKLHYGKTVHCYATKVGLE 116
F L F+ ++ E + TLV + +AC+ L E L GK VH Y + G E
Sbjct: 175 CSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-E 233
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
+ N L+ MY K ++ + L G R
Sbjct: 234 LNSFIINTLVAMYGKLGKLASSKVLLGSFGGR---------------------------- 265
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
D+V W +++ + +Q EALE ++M+ EGV PDE + SVL ACS L L+ G
Sbjct: 266 ----DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321
Query: 237 RLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN 295
+ +H + L+N ++ +++FV +AL+DMY C + F + + W MI G +
Sbjct: 322 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQ 381
Query: 296 YGLGNEALRVFYQMERK-GIKPNEATFVSVLAACRHSGLIT--EGCQLFRRMGGVYRVQP 352
EAL +F ME G+ N T V+ AC SG + E F G+ R
Sbjct: 382 NEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR--- 438
Query: 353 TIEHFV--CLVDLLSRAG 368
+ FV L+D+ SR G
Sbjct: 439 --DRFVQNTLMDMYSRLG 454
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 125/278 (44%), Gaps = 37/278 (13%)
Query: 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY-MLNMENAL 125
E ++ + +I GI D L A A L+ + GK +H + K G + + N L
Sbjct: 80 EAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTL 139
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLW 185
+ +Y KC + + VFD I +++ V W
Sbjct: 140 VNLYRKCGDFGAVYK--------------------------------VFDRISERNQVSW 167
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS---NLQYGRLVHRF 242
S++ ++ E ALE F+ M+DE V P +VSV++ACS+L L G+ VH +
Sbjct: 168 NSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY 227
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
L+ ++F+ L+ MY K G L + V +D+VTW T++ L EA
Sbjct: 228 GLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEA 286
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
L +M +G++P+E T SVL AC H ++ G +L
Sbjct: 287 LEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/416 (35%), Positives = 234/416 (56%), Gaps = 5/416 (1%)
Query: 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLH--YGKTVHC 108
SW + +++ E F + G+ + IT + L S C G +H
Sbjct: 38 SWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHG 97
Query: 109 YATKVGLEYMLNM-ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELV 167
YA K+GL+ M A++ MY+K +A +FD M +N V+ N +I+GY+ V
Sbjct: 98 YACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYM-EDKNSVTWNTMIDGYMRSGQV 156
Query: 168 DLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227
D A ++FD++ ++D++ W +M++G VK EEAL F++M GV PD +++ L+AC
Sbjct: 157 DNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNAC 216
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
++L L +G VHR++L + + V +LID+Y +CG +E A FY + + VV+W
Sbjct: 217 TNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWN 276
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
++I G A G +E+L F +M+ KG KP+ TF L AC H GL+ EG + F+ M
Sbjct: 277 SVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCD 336
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY-SEFDLGK 406
YR+ P IEH+ CLVDL SRAG L A + ++ MP + + +LL+AC + + L +
Sbjct: 337 YRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAE 396
Query: 407 KVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ ++ L +SH YV+LSN YA +G W ++ RR MK L +K+PG S I++
Sbjct: 397 RLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEI 452
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 131/322 (40%), Gaps = 73/322 (22%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSG---EVLIL 71
D + N++I Y R +A +FDKMP RD+ SW ++ N F G E L+
Sbjct: 137 DKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMI---NGFVKKGYQEEALLW 193
Query: 72 FKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK 131
F+++ G+ D + ++ +AC L L +G VH Y + + + N+L+ +Y +
Sbjct: 194 FREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCR 253
Query: 132 CKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHG 191
C ++ A ++F M +R +VS W S++ G
Sbjct: 254 CGCVEFARQVFYNM-EKRTVVS-------------------------------WNSVIVG 281
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG-RLVHRFILQNNITQ 250
E+L F+KM ++G PD L+ACS + ++ G R I+
Sbjct: 282 FAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISP 341
Query: 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQME 310
L+D+YS+ G LE+AL +++ +
Sbjct: 342 RIEHYGCLVDLYSRAGRLEDAL---------------KLVQSMP---------------- 370
Query: 311 RKGIKPNEATFVSVLAACRHSG 332
+KPNE S+LAAC + G
Sbjct: 371 ---MKPNEVVIGSLLAACSNHG 389
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 9/162 (5%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H +V +++ V NSLI Y R AR +F M R V SWN+++ +
Sbjct: 225 GLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAA 284
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARL----EKLHYGKTVHC-YATKVGLE 116
++ E L+ F+++ +G D +T +AC+ + E L Y + + C Y +E
Sbjct: 285 NGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIE 344
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILI 158
+ L+ +Y++ +++AL+L M + N V + L+
Sbjct: 345 HY----GCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLL 382
Score = 39.3 bits (90), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
++ + V+WT+ I L G EA + F M G++PN TF+++L+ C G T
Sbjct: 30 QSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGC---GDFTS 86
Query: 337 GCQ 339
G +
Sbjct: 87 GSE 89
>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610
OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
Length = 654
Score = 269 bits (687), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 153/466 (32%), Positives = 243/466 (52%), Gaps = 40/466 (8%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H + T+ +D+ V ++ Y + AR +FD ++ +W+ ++ Y +
Sbjct: 224 GKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVE 283
Query: 62 ---FSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
++GEV F+ L+ + + + + + ++ CAR L G+ VHCYA K G
Sbjct: 284 NEMIKEAGEVF--FQMLVNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFIL 341
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L ++N ++ YAK + +A R F E+G
Sbjct: 342 DLTVQNTIISFYAKYGSLCDAFRQFSEIGL------------------------------ 371
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
KD++ + S++ GCV +PEE+ LF +M G+ PD ++ VL+ACS L+ L +G
Sbjct: 372 --KDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGS 429
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG 297
H + + + + + AL+DMY+KCG L+ A F +D+V+W TM+ G +G
Sbjct: 430 SCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHG 489
Query: 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG-GVYRVQPTIEH 356
LG EAL +F M+ G+ P+E T +++L+AC HSGL+ EG QLF M G + V P I+H
Sbjct: 490 LGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDH 549
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
+ C+ DLL+RAG L +A +F+ MP E LLSAC TY +LG +V+ M LG
Sbjct: 550 YNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKMQSLG 609
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ E+ VLLSN Y+ W + A R K+ K PG S +D+
Sbjct: 610 -ETTESLVLLSNTYSAAERWEDAARIRMIQKKRGLLKTPGYSWVDV 654
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/431 (27%), Positives = 209/431 (48%), Gaps = 45/431 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H+HV + +D+YV +L+ FY + A +FD+MP RD+ +WN ++S ++
Sbjct: 122 GKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSL 181
Query: 62 FSDSGEVLILFKQL-IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+V+ LF + +G+ + T+V +F A R L GK VH Y T++G L
Sbjct: 182 HCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLV 241
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++ +L +YAK K + A R+FD + ++N V+ + +I GY++ E++ A EVF
Sbjct: 242 VKTGILDVYAKSKCIIYARRVFD-LDFKKNEVTWSAMIGGYVENEMIKEAGEVF------ 294
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS-VLSACSSLSNLQYGRLV 239
F+ ++++ V V + +L C+ +L GR V
Sbjct: 295 ------------------------FQMLVNDNVAMVTPVAIGLILMGCARFGDLSGGRCV 330
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H + ++ D V+ +I Y+K GSL +A F + KDV+++ ++I G
Sbjct: 331 HCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRP 390
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG--CQLFRRMGGVYRVQPTIEHF 357
E+ R+F++M GI+P+ T + VL AC H + G C + + G Y V +I +
Sbjct: 391 EESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHG-YAVNTSICN- 448
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKK---VANNMMK 414
L+D+ ++ G L A+ M D +S+ +L + LGK+ + N+M +
Sbjct: 449 -ALMDMYTKCGKLDVAKRVFDTMHKRD-IVSWNTML---FGFGIHGLGKEALSLFNSMQE 503
Query: 415 LGNQSHEAYVL 425
G E +L
Sbjct: 504 TGVNPDEVTLL 514
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 3/180 (1%)
Query: 161 YIDMELVDLAREVFDEIVDKDI--VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE 218
Y V+LAR VFDEI I + W M+ E+AL+L+ KM++ GV P +
Sbjct: 45 YASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKY 104
Query: 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278
VL AC+ L + G+L+H + ++ D +V TAL+D Y+KCG LE A+ F +
Sbjct: 105 TYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEM 164
Query: 279 DCKDVVTWTTMIEGLANYGLGNEALRVFYQMER-KGIKPNEATFVSVLAACRHSGLITEG 337
+D+V W MI G + + + + +F M R G+ PN +T V + A +G + EG
Sbjct: 165 PKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREG 224
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 268 bits (686), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 166/532 (31%), Positives = 268/532 (50%), Gaps = 69/532 (12%)
Query: 2 GKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY 59
G+GL H V K LD I V NSLI+ Y + AR+LFDK + V +WN+++S Y
Sbjct: 211 GRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGY 270
Query: 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYML 119
E L +F + + + + + CA L++L + + +HC K G +
Sbjct: 271 AANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQ 330
Query: 120 NMENALLLMYAKCKEMDEALR--------------------------------LFDEM-- 145
N+ AL++ Y+KC M +ALR LF EM
Sbjct: 331 NIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKR 390
Query: 146 -GSRRN----------------------IVSLN---------ILINGYIDMELVDLAREV 173
G R N +V N L++ Y+ + V+ A +V
Sbjct: 391 KGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKV 450
Query: 174 FDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL-SN 232
F I DKDIV W +M+ G + + E A+++F ++ G+ P+E S+L+ C++ ++
Sbjct: 451 FSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNAS 510
Query: 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292
+ G+ H F +++ + V +AL+ MY+K G++E A F + KD+V+W +MI G
Sbjct: 511 MGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISG 570
Query: 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352
A +G +AL VF +M+++ +K + TF+ V AAC H+GL+ EG + F M ++ P
Sbjct: 571 YAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAP 630
Query: 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412
T EH C+VDL SRAG L +A + I+ MP ++ +L+AC + + +LG+ A +
Sbjct: 631 TKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKI 690
Query: 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+ + + AYVLLSN YA G W E A+ R+ M E +K+PG S I++K+
Sbjct: 691 IAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKN 742
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 153/327 (46%), Gaps = 33/327 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH K D+ VG SL+ Y + + F D R +FD+M R+V +W TL+S Y
Sbjct: 112 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR 171
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S + EVL LF ++ EG + T A G VH K GL+ + +
Sbjct: 172 NSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 231
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+L+ +Y KC + +A LFD+ EV K
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKT--------------------------EV------KS 259
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W SM+ G EAL +F M V E SV+ C++L L++ +H
Sbjct: 260 VVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHC 319
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-KDVVTWTTMIEGLANYGLGN 300
+++ D ++TAL+ YSKC ++ +AL F + C +VV+WT MI G
Sbjct: 320 SVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKE 379
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAA 327
EA+ +F +M+RKG++PNE T+ +L A
Sbjct: 380 EAVDLFSEMKRKGVRPNEFTYSVILTA 406
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 135/293 (46%), Gaps = 32/293 (10%)
Query: 36 DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95
+A LFDK P RD S+ +L+ ++ + E LF + G+ D + A
Sbjct: 45 NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSA 104
Query: 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLN 155
L +G+ +HC K G +++ +L+ Y K +
Sbjct: 105 TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDG----------------- 147
Query: 156 ILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215
R+VFDE+ ++++V W +++ G + +E L LF +M +EG P
Sbjct: 148 ---------------RKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQP 192
Query: 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275
+ + L + G VH +++N + + V +LI++Y KCG++ +A + F
Sbjct: 193 NSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILF 252
Query: 276 YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
KT+ K VVTW +MI G A GL EAL +FY M ++ +E++F SV+ C
Sbjct: 253 DKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLC 305
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 87/171 (50%)
Query: 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
A +FD+ +D + S++ G + + +EA LF + G+ D + SVL ++
Sbjct: 46 AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105
Query: 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM 289
L + +GR +H ++ D V T+L+D Y K + ++ F + ++VVTWTT+
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165
Query: 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQL 340
I G A + +E L +F +M+ +G +PN TF + L G+ G Q+
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQV 216
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 268 bits (686), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 150/463 (32%), Positives = 256/463 (55%), Gaps = 14/463 (3%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G ++ K++L D+ V N+ I YG+ +A +FD+M RD SWN +++ +
Sbjct: 401 GLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQ 460
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L LF ++ I D+ T + AC L YG +H K G+ ++
Sbjct: 461 NGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSV 519
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MY+KC ++EA ++ R N+ +G ++ EL + + E+
Sbjct: 520 GCSLIDMYSKCGMIEEAEKIHSRFFQRANV-------SGTME-ELEKMHNKRLQEMC--- 568
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W S++ G V +Q E+A LF +M++ G+TPD+ +VL C++L++ G+ +H
Sbjct: 569 -VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHA 627
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+++ + D ++ + L+DMYSKCG L ++ + F K+ +D VTW MI G A++G G E
Sbjct: 628 QVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEE 687
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+++F +M + IKPN TF+S+L AC H GLI +G + F M Y + P + H+ +V
Sbjct: 688 AIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMV 747
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC-ITYSEFDLGKKVANNMMKLGNQSH 420
D+L ++G + +A E I+ MP E + ++ LL C I + ++ ++ +++L Q
Sbjct: 748 DILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDS 807
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
AY LLSN YA G W +V++ RRNM+ + +K+PG S ++LK
Sbjct: 808 SAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELK 850
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 112/430 (26%), Positives = 193/430 (44%), Gaps = 73/430 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK HAH+ + +V N L+ Y F A ++FDKMP RDV SWN +++ Y+
Sbjct: 66 LGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYS 125
Query: 61 DFSD----------------------------SGEVLI---LFKQLIFEGIVADKITLVI 89
+D +GE L +F + EGI D T I
Sbjct: 126 KSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAI 185
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ C+ LE G +H +VG + + +ALL MYAK K E+LR
Sbjct: 186 ILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLR--------- 236
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
VF I +K+ V W +++ GCV+ AL+ FK+M
Sbjct: 237 -----------------------VFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 273
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
+ + SVL +C++LS L+ G +H L+++ D V+TA +DMY+KC +++
Sbjct: 274 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 333
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+A + F ++ + ++ MI G + G +AL +F+++ G+ +E + V AC
Sbjct: 334 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 393
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCL----VDLLSRAGLLYQAEEFIKIMPAEDK 385
++EG Q++ ++ ++ VC+ +D+ + L +A M D
Sbjct: 394 LVKGLSEGLQIYG-----LAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDA 448
Query: 386 FISYKALLSA 395
+S+ A+++A
Sbjct: 449 -VSWNAIIAA 457
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +HA V K L SD+Y+ ++L+ Y + D+R++F+K RD +WN ++ Y
Sbjct: 621 LGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYA 680
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYML 119
E + LF+++I E I + +T + + ACA + + G + + GL+ L
Sbjct: 681 HHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQL 740
Query: 120 NMENALLLMYAKCKEMDEALRLFDEM 145
+ ++ + K ++ AL L EM
Sbjct: 741 PHYSNMVDILGKSGKVKRALELIREM 766
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 95/241 (39%), Gaps = 40/241 (16%)
Query: 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD 282
V C+ L+ G+ H ++ + FV L+ +Y+ A + F K +D
Sbjct: 54 VFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRD 113
Query: 283 VVTWTTMIEG----------------------------LANYGLGNEALR---VFYQMER 311
VV+W MI G L+ Y E+L+ VF M R
Sbjct: 114 VVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGR 173
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV--QPTIEHFVCLVDLLSRAGL 369
+GI+ + TF +L C + G Q+ G V RV + L+D+ ++
Sbjct: 174 EGIEFDGRTFAIILKVCSFLEDTSLGMQIH---GIVVRVGCDTDVVAASALLDMYAKGKR 230
Query: 370 LYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG---NQSHEAYVLL 426
++ + +P E +S+ A+++ C+ + L K M K+ +QS A VL
Sbjct: 231 FVESLRVFQGIP-EKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 289
Query: 427 S 427
S
Sbjct: 290 S 290
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 166/510 (32%), Positives = 251/510 (49%), Gaps = 83/510 (16%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK LH + + +++VGN L+ Y + + +A +F M +DV SWN +++ Y+
Sbjct: 247 LGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYS 306
Query: 61 D---FSD------------------------SG--------EVLILFKQLIFEGIVADKI 85
F D SG E L + +Q++ GI +++
Sbjct: 307 QIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEV 366
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME-------NALLLMYAKCKEMDEA 138
TL+ + S CA + L +GK +HCYA K ++ N N L+ MYAKCK+
Sbjct: 367 TLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKK---- 422
Query: 139 LRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK--DIVLWRSMMHGCVKAK 196
VD AR +FD + K D+V W M+ G +
Sbjct: 423 ----------------------------VDTARAMFDSLSPKERDVVTWTVMIGGYSQHG 454
Query: 197 QPEEALELFKKMIDEGVT--PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA-- 252
+ALEL +M +E P+ + L AC+SL+ L+ G+ +H + L+N Q+A
Sbjct: 455 DANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQ--QNAVP 512
Query: 253 -FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
FV LIDMY+KCGS+ +A + F K+ VTWT+++ G +G G EAL +F +M R
Sbjct: 513 LFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRR 572
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY 371
G K + T + VL AC HSG+I +G + F RM V+ V P EH+ CLVDLL RAG L
Sbjct: 573 IGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLN 632
Query: 372 QAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431
A I+ MP E + + A LS C + + +LG+ A + +L + +Y LLSN YA
Sbjct: 633 AALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYA 692
Query: 432 LEGHWTEVAEARRNMKELQTRKKPGNSIID 461
G W +V R M+ +K+PG S ++
Sbjct: 693 NAGRWKDVTRIRSLMRHKGVKKRPGCSWVE 722
Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 210/412 (50%), Gaps = 22/412 (5%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ HA T S+++VGN+L+ Y R +DAR +FD+M DV SWN+++ Y
Sbjct: 146 GESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAK 205
Query: 62 FSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
L +F ++ E G D ITLV + CA L GK +HC+A + +
Sbjct: 206 LGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMF 265
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM----ELVDLAREVFDE 176
+ N L+ MYAKC MDEA +F M S +++VS N ++ GY + + V L ++ +E
Sbjct: 266 VGNCLVDMYAKCGMMDEANTVFSNM-SVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEE 324
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
+ D+V W + + G + EAL + ++M+ G+ P+E ++SVLS C+S+ L +G
Sbjct: 325 KIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384
Query: 237 RLVHRFIL-------QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK--DVVTWT 287
+ +H + + +N + V LIDMY+KC ++ A F K DVVTWT
Sbjct: 385 KEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWT 444
Query: 288 TMIEGLANYGLGNEALRVFYQM--ERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345
MI G + +G N+AL + +M E +PN T L AC + G Q+
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAY-- 502
Query: 346 GVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ Q + FV CL+D+ ++ G + A M A+++ +++ +L++
Sbjct: 503 ALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNE-VTWTSLMTG 553
Score = 162 bits (409), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 104/352 (29%), Positives = 153/352 (43%), Gaps = 70/352 (19%)
Query: 24 LIHFYGRMALFTDARVLFDKMPFRDVG--SWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81
LI Y + + A L + P D G WN+L+ Y D + + L LF +
Sbjct: 65 LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124
Query: 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRL 141
D T +F AC + + G++ H + G + + NAL+ MY++C+ + +A
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDA--- 181
Query: 142 FDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201
R+VFDE+ D+V W S++ K +P+ A
Sbjct: 182 -----------------------------RKVFDEMSVWDVVSWNSIIESYAKLGKPKVA 212
Query: 202 LELFKKMIDE-GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
LE+F +M +E G PD +V+VL C+SL G+ +H F + + + Q+ FV L+D
Sbjct: 213 LEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVD 272
Query: 261 MYSKCGSLEEALVTFYKTDCKDVVTWTTM------------------------------- 289
MY+KCG ++EA F KDVV+W M
Sbjct: 273 MYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVT 332
Query: 290 ----IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
I G A GLG EAL V QM GIKPNE T +SVL+ C G + G
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 125/273 (45%), Gaps = 13/273 (4%)
Query: 131 KCKEMDEALRLFDEMGSRRNIVSLNI---LINGYIDMELVDLAREVFDEIVDKD--IVLW 185
KCK + + ++L + I++LN+ LI+ YI + + A + D + W
Sbjct: 37 KCKTISQ-VKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHW 95
Query: 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245
S++ + L LF M TPD V AC +S+++ G H L
Sbjct: 96 NSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLV 155
Query: 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305
+ FV AL+ MYS+C SL +A F + DVV+W ++IE A G AL +
Sbjct: 156 TGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEM 215
Query: 306 FYQMERK-GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVD 362
F +M + G +P+ T V+VL C G + G QL +Q FV CLVD
Sbjct: 216 FSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQ---NMFVGNCLVD 272
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+ ++ G++ +A M +D +S+ A+++
Sbjct: 273 MYAKCGMMDEANTVFSNMSVKD-VVSWNAMVAG 304
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/464 (32%), Positives = 248/464 (53%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H K L + + N+L+ Y + +A +FD R+ +W+ +++ Y+
Sbjct: 239 LGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYS 298
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+S E + LF ++ GI + T+V + +AC+ + L GK +H + K+G E L
Sbjct: 299 QNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLF 358
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
AL+ MYAK + +A R+ FD + ++
Sbjct: 359 ATTALVDMYAKAGCLADA--------------------------------RKGFDCLQER 386
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+ LW S++ G V+ EEAL L+++M G+ P++ M SVL ACSSL+ L+ G+ VH
Sbjct: 387 DVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVH 446
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+++ + + +AL MYSKCGSLE+ + F +T KDVV+W MI GL++ G G+
Sbjct: 447 GHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGD 506
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EAL +F +M +G++P++ TFV++++AC H G + G F M + P ++H+ C+
Sbjct: 507 EALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACM 566
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLLSRAG L +A+EFI+ + ++ LLSAC + + +LG +M LG++
Sbjct: 567 VDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRES 626
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
YV LS Y G +V ++M+ K+ G S I+LK+
Sbjct: 627 STYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKN 670
Score = 171 bits (434), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 121/409 (29%), Positives = 192/409 (46%), Gaps = 60/409 (14%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G+ HA V K + DIYV SL+ Y + L D +F MP R+ +W+T++S Y
Sbjct: 136 VGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYA 195
Query: 60 --NDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
++ +V LF + EG +D + +L S A + + G+ +HC K GL
Sbjct: 196 TRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATI-YVGLGRQIHCITIKNGLLG 254
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + NAL+ MY+KC+ ++EA ++FD G R +I
Sbjct: 255 FVALSNALVTMYSKCESLNEACKMFDSSGDRNSIT------------------------- 289
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
W +M+ G + + EA++LF +M G+ P E +V VL+ACS + L+ G+
Sbjct: 290 -------WSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGK 342
Query: 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMIEGLA 294
+H F+L+ + F TAL+DMY+K G L +A F DC +DV WT++I G
Sbjct: 343 QLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGF---DCLQERDVALWTSLISGYV 399
Query: 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI 354
EAL ++ +M+ GI PN+ T SVL AC + G Q+ TI
Sbjct: 400 QNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGH---------TI 450
Query: 355 EHFV--------CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
+H L + S+ G L + P +D +S+ A++S
Sbjct: 451 KHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKD-VVSWNAMISG 498
Score = 145 bits (365), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 116/455 (25%), Positives = 208/455 (45%), Gaps = 74/455 (16%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + +T + I N L++FY + A +F+ + +DV SWN+L++ Y+
Sbjct: 33 GRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQ 92
Query: 62 ---FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118
S S V+ LF+++ + I+ + TL +F A + L+ G+ H K+
Sbjct: 93 NGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGD 152
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
+ ++ +L+ MY K +++ L++F M RN + + +++GY V+ A +VF+
Sbjct: 153 IYVDTSLVGMYCKAGLVEDGLKVFAYM-PERNTYTWSTMVSGYATRGRVEEAIKVFN--- 208
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
LF + +EG D V +VLS+ ++ + GR
Sbjct: 209 -------------------------LFLREKEEGSDSDY-VFTAVLSSLAATIYVGLGRQ 242
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++N + + AL+ MYSKC SL EA F + ++ +TW+ M+ G + G
Sbjct: 243 IHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGE 302
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMGGVYRVQPTIE 355
EA+++F +M GIKP+E T V VL AC + EG QL ++G + T
Sbjct: 303 SLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFAT-- 360
Query: 356 HFVCLVDLLSRAGLLYQAEE-------------------FIKIMPAEDKFISYK------ 390
LVD+ ++AG L A + +++ E+ I Y+
Sbjct: 361 --TALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAG 418
Query: 391 ---------ALLSACITYSEFDLGKKVANNMMKLG 416
++L AC + + +LGK+V + +K G
Sbjct: 419 IIPNDPTMASVLKACSSLATLELGKQVHGHTIKHG 453
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 9/203 (4%)
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ P ++ L+ S NL GR VH I++ + L++ Y+KCG L +A
Sbjct: 10 LNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAH 69
Query: 273 VTFYKTDCKDVVTWTTMIEGLA-NYGLGNE--ALRVFYQMERKGIKPNEATFVSVLAACR 329
F CKDVV+W ++I G + N G+ + +++F +M + I PN T + A
Sbjct: 70 SIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAES 129
Query: 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
T G Q V ++ + +V LV + +AGL+ + MP + +
Sbjct: 130 SLQSSTVGRQAHAL---VVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTY- 185
Query: 388 SYKALLSACITYSEFDLGKKVAN 410
++ ++S T + KV N
Sbjct: 186 TWSTMVSGYATRGRVEEAIKVFN 208
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 265 bits (678), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 159/462 (34%), Positives = 253/462 (54%), Gaps = 7/462 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G +H + KT L SD+++ N LI Y + +R +FD+MP RD S+N+++ Y
Sbjct: 140 GMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVK 199
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
LI+ + +F+ + + L+ S + + G + E L
Sbjct: 200 CG-----LIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLIS 254
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
N+++ Y K +++A LFD M RR++V+ +I+GY + V A+ +FD++ +D
Sbjct: 255 WNSMIDGYVKHGRIEDAKGLFDVM-PRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRD 313
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V + SMM G V+ K EALE+F M E + PD+ +V VL A + L L +H
Sbjct: 314 VVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMH 373
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I++ + ALIDMYSKCGS++ A++ F + K + W MI GLA +GLG
Sbjct: 374 LYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGE 433
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A + Q+ER +KP++ TFV VL AC HSGL+ EG F M ++++P ++H+ C+
Sbjct: 434 SAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 493
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VD+LSR+G + A+ I+ MP E + ++ L+AC + EF+ G+ VA +++ +
Sbjct: 494 VDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNP 553
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+YVLLSN YA G W +V R MKE + K PG S I+L
Sbjct: 554 SSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIEL 595
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 166/331 (50%), Gaps = 24/331 (7%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111
WN ++ ++ D + L+L ++ G+ DK +L ++ AC+RL + G +H +
Sbjct: 89 WNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLK 148
Query: 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAR 171
K GL L ++N L+ +Y KC + + ++FD M +R+ VS N +I+GY+ L+ AR
Sbjct: 149 KTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRM-PKRDSVSYNSMIDGYVKCGLIVSAR 207
Query: 172 EVFD--EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229
E+FD + K+++ W SM+ G Q + +++ K+ + P+++ ++S S
Sbjct: 208 ELFDLMPMEMKNLISWNSMISG---YAQTSDGVDIASKLFAD--MPEKD----LISWNSM 258
Query: 230 LSN-LQYGRLVH-RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+ +++GR+ + + +D +ID Y+K G + A F + +DVV +
Sbjct: 259 IDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYN 318
Query: 288 TMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346
+M+ G EAL +F ME++ + P++ T V VL A G +++ +
Sbjct: 319 SMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMH----- 373
Query: 347 VYRVQPTI----EHFVCLVDLLSRAGLLYQA 373
+Y V+ + V L+D+ S+ G + A
Sbjct: 374 LYIVEKQFYLGGKLGVALIDMYSKCGSIQHA 404
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 42/267 (15%)
Query: 166 LVDLAREVFDEI--------VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217
L D AR VF E +D LW +++ K P +AL L M++ GV+ D+
Sbjct: 62 LADFARCVFHEYHVCSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDK 121
Query: 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277
+ VL ACS L ++ G +H F+ + + D F++ LI +Y KCG L + F +
Sbjct: 122 FSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDR 181
Query: 278 TDCKDVVTWTTMIEGLANYGLGNEALRVF--YQMERKGIKPNEATFVSVLAA-CRHSGLI 334
+D V++ +MI+G GL A +F ME K N ++ S+++ + S +
Sbjct: 182 MPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMK----NLISWNSMISGYAQTSDGV 237
Query: 335 TEGCQLFRRMG------------------------GVYRVQP--TIEHFVCLVDLLSRAG 368
+LF M G++ V P + + ++D ++ G
Sbjct: 238 DIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLG 297
Query: 369 LLYQAEEFIKIMPAEDKFISYKALLSA 395
++ A+ MP D ++Y ++++
Sbjct: 298 FVHHAKTLFDQMPHRD-VVAYNSMMAG 323
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 85/187 (45%), Gaps = 18/187 (9%)
Query: 221 VSVLSACSSLSNLQ--YGRLVHRFILQN-NITQD-----AFVKTALIDMYSKCGSLEEAL 272
+ VL +C + ++ +GRL+ I++N N+T A + + +++C E +
Sbjct: 16 IHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHV 75
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
+F + +D W +I+ ++ +AL + M G+ ++ + VL AC G
Sbjct: 76 CSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLG 135
Query: 333 LITEGCQL--FRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
+ G Q+ F + G++ + F+ CL+ L + G L + + MP D +S
Sbjct: 136 FVKGGMQIHGFLKKTGLWS-----DLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDS-VS 189
Query: 389 YKALLSA 395
Y +++
Sbjct: 190 YNSMIDG 196
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 265 bits (677), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/463 (32%), Positives = 244/463 (52%), Gaps = 33/463 (7%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +HAH+ ++ DI +GN+L++ Y + +AR +F+KMP RD +W TL+S Y+
Sbjct: 79 GRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQ 138
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ L+ F Q++ G ++ TL + A A + G +H + K G + +++
Sbjct: 139 HDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHV 198
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+ALL +Y + MD+A + VFD + ++
Sbjct: 199 GSALLDLYTRYGLMDDA--------------------------------QLVFDALESRN 226
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +++ G + E+ALELF+ M+ +G P S+ ACSS L+ G+ VH
Sbjct: 227 DVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHA 286
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+++++ AF L+DMY+K GS+ +A F + +DVV+W +++ A +G G E
Sbjct: 287 YMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKE 346
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A+ F +M R GI+PNE +F+SVL AC HSGL+ EG + M + P H+V +V
Sbjct: 347 AVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVV 405
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +A FI+ MP E +KALL+AC + +LG A ++ +L
Sbjct: 406 DLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPG 465
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+V+L N YA G W + A R+ MKE +K+P S +++++
Sbjct: 466 PHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIEN 508
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 161/347 (46%), Gaps = 44/347 (12%)
Query: 80 IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEAL 139
I AD+ L C + L G+ VH + + + + M N LL MYAKC ++EA
Sbjct: 56 IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115
Query: 140 RLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPE 199
++F++M R D V W +++ G + +P
Sbjct: 116 KVFEKMPQR--------------------------------DFVTWTTLISGYSQHDRPC 143
Query: 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259
+AL F +M+ G +P+E + SV+ A ++ G +H F ++ + V +AL+
Sbjct: 144 DALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALL 203
Query: 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA 319
D+Y++ G +++A + F + ++ V+W +I G A +AL +F M R G +P+
Sbjct: 204 DLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHF 263
Query: 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV--CLVDLLSRAGLLYQAEEFI 377
++ S+ AC +G + +G + M + + F L+D+ +++G ++ A +
Sbjct: 264 SYASLFGACSSTGFLEQGKWVHAYM---IKSGEKLVAFAGNTLLDMYAKSGSIHDARKIF 320
Query: 378 KIMPAEDKFISYKALLSACITYSEFDLGKKVA---NNMMKLGNQSHE 421
+ D +S+ +LL+A Y++ GK+ M ++G + +E
Sbjct: 321 DRLAKRD-VVSWNSLLTA---YAQHGFGKEAVWWFEEMRRVGIRPNE 363
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 119/258 (46%), Gaps = 15/258 (5%)
Query: 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272
+ D ++L C+ L GR+VH ILQ+ D + L++MY+KCGSLEEA
Sbjct: 56 IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115
Query: 273 VTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332
F K +D VTWTT+I G + + +AL F QM R G PNE T SV+ A +
Sbjct: 116 KVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA---AA 172
Query: 333 LITEGCQLFRRMGGVYRV--QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
GC + G + + L+DL +R GL+ A+ + + + +S+
Sbjct: 173 AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRND-VSWN 231
Query: 391 ALLSACITYSEFDLGKKVANNMMKLG-NQSHEAYVLL-----SNFYALEGHWTEVAEARR 444
AL++ S + ++ M++ G SH +Y L S + +G W +
Sbjct: 232 ALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKS 291
Query: 445 NMKELQTRKKPGNSIIDL 462
K + GN+++D+
Sbjct: 292 GEKLVAF---AGNTLLDM 306
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 265 bits (677), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 159/494 (32%), Positives = 258/494 (52%), Gaps = 65/494 (13%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFY---GRM--------------------------- 31
G+ +H HV K D D+YV SLI Y GR+
Sbjct: 153 GQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYAS 212
Query: 32 -ALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90
+A+ LFD++P +DV SWN ++S Y + + E L LFK ++ + D+ T+V +
Sbjct: 213 RGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTV 272
Query: 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN 150
SACA+ + G+ VH + G L + NAL+ +Y+KC E++ A LF+ +
Sbjct: 273 VSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY--- 329
Query: 151 IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210
KD++ W +++ G +EAL LF++M+
Sbjct: 330 -----------------------------KDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360
Query: 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ--NNITQDAFVKTALIDMYSKCGSL 268
G TP++ M+S+L AC+ L + GR +H +I + +T + ++T+LIDMY+KCG +
Sbjct: 361 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDI 420
Query: 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
E A F K + +W MI G A +G + + +F +M + GI+P++ TFV +L+AC
Sbjct: 421 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSAC 480
Query: 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388
HSG++ G +FR M Y++ P +EH+ C++DLL +GL +AEE I +M E +
Sbjct: 481 SHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVI 540
Query: 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448
+ +LL AC + +LG+ A N++K+ ++ +YVLLSN YA G W EVA+ R + +
Sbjct: 541 WCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLND 600
Query: 449 LQTRKKPGNSIIDL 462
+K PG S I++
Sbjct: 601 KGMKKVPGCSSIEI 614
Score = 199 bits (505), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 215/423 (50%), Gaps = 14/423 (3%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTD---ARVLFDKMPFRDVGSWNTLMSIYND 61
+HA + K L + Y + LI F F A +F + ++ WNT+ +
Sbjct: 52 IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHAL 111
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
SD L L+ +I G++ + T + +CA+ + G+ +H + K+G + L +
Sbjct: 112 SSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYV 171
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
+L+ MY + +++A ++FD+ R++VS LI GY ++ A+++FDEI KD
Sbjct: 172 HTSLISMYVQNGRLEDAHKVFDK-SPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKD 230
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ G + +EALELFK M+ V PDE MV+V+SAC+ +++ GR VH
Sbjct: 231 VVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHL 290
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I + + + ALID+YSKCG LE A F + KDV++W T+I G + L E
Sbjct: 291 WIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKE 350
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF----RRMGGVYRVQPTIEHF 357
AL +F +M R G PN+ T +S+L AC H G I G + +R+ GV
Sbjct: 351 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL---R 407
Query: 358 VCLVDLLSRAGLLYQAEE-FIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
L+D+ ++ G + A + F I+ S+ A++ + D + + M K+G
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSIL--HKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG 465
Query: 417 NQS 419
Q
Sbjct: 466 IQP 468
Score = 112 bits (279), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 137/301 (45%), Gaps = 36/301 (11%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H + S++ + N+LI Y + A LF+++P++DV SWNTL+ Y
Sbjct: 284 LGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYT 343
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYM 118
+ E L+LF++++ G + +T++ + ACA L + G+ +H Y K G+
Sbjct: 344 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNA 403
Query: 119 LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
++ +L+ MYAKC +++ A +VF+ I+
Sbjct: 404 SSLRTSLIDMYAKCGDIEA--------------------------------AHQVFNSIL 431
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K + W +M+ G + + + +LF +M G+ PD+ V +LSACS L GR
Sbjct: 432 HKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRH 491
Query: 239 VHRFILQN-NITQDAFVKTALIDMYSKCGSLE-EALVTFYKTDCKDVVTWTTMIEGLANY 296
+ R + Q+ +T +ID+ G + + D V W ++++ +
Sbjct: 492 IFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMH 551
Query: 297 G 297
G
Sbjct: 552 G 552
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 158/338 (46%), Gaps = 46/338 (13%)
Query: 165 ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224
E + A VF I + ++++W +M G + P AL+L+ MI G+ P+ VL
Sbjct: 82 EGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVL 141
Query: 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284
+C+ + G+ +H +L+ D +V T+LI MY + G LE+A F K+ +DVV
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVV 201
Query: 285 TWTTMIEGLANYG-----------------------------LGN--EALRVFYQMERKG 313
++T +I+G A+ G GN EAL +F M +
Sbjct: 202 SYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN 261
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
++P+E+T V+V++AC SG I G Q+ + + ++ L+DL S+ G L A
Sbjct: 262 VRPDESTMVTVVSACAQSGSIELGRQVHLWIDD-HGFGSNLKIVNALIDLYSKCGELETA 320
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKK---VANNMMKLGNQSHEAYVL----- 425
+ +P +D IS+ L+ Y+ +L K+ + M++ G ++ +L
Sbjct: 321 CGLFERLPYKD-VISWNTLIGG---YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 376
Query: 426 LSNFYALE-GHWTEVAEARRNMKELQTRKKPGNSIIDL 462
++ A++ G W V +R +K + S+ID+
Sbjct: 377 CAHLGAIDIGRWIHVYIDKR-LKGVTNASSLRTSLIDM 413
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 265 bits (676), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 141/464 (30%), Positives = 245/464 (52%), Gaps = 32/464 (6%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + ++ DS + + +L+ Y + AR LFD M R+V SWN+++ Y
Sbjct: 254 VGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYV 313
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E +++F++++ EG+ ++++ ACA L L G+ +H + ++GL+
Sbjct: 314 QNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLD---- 369
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
RN+ +N LI+ Y + VD A +F ++ +
Sbjct: 370 ----------------------------RNVSVVNSLISMYCKCKEVDTAASMFGKLQSR 401
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
+V W +M+ G + +P +AL F +M V PD VSV++A + LS + + +H
Sbjct: 402 TLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIH 461
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++++ + ++ FV TAL+DMY+KCG++ A + F + V TW MI+G +G G
Sbjct: 462 GVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGK 521
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL +F +M++ IKPN TF+SV++AC HSGL+ G + F M Y ++ +++H+ +
Sbjct: 522 AALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAM 581
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +A +FI MP + Y A+L AC + + +K A + +L
Sbjct: 582 VDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDG 641
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
+VLL+N Y W +V + R +M RK PG S++++K+
Sbjct: 642 GYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKN 685
Score = 185 bits (469), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 171/327 (52%), Gaps = 32/327 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+GK +H + K+ D++ L + Y + +AR +FD+MP RD+ SWNT+++ Y+
Sbjct: 153 VGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYS 212
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L + K + E + IT+V + A + L + GK +H YA + G + ++N
Sbjct: 213 QNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN 272
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ AL+ MYAKC ++ A +LFD M RN+VS N +I+ Y+ E
Sbjct: 273 ISTALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDAYVQNE--------------- 316
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
P+EA+ +F+KM+DEGV P + ++ L AC+ L +L+ GR +H
Sbjct: 317 ----------------NPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH 360
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ ++ + ++ V +LI MY KC ++ A F K + +V+W MI G A G
Sbjct: 361 KLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPI 420
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAA 327
+AL F QM + +KP+ T+VSV+ A
Sbjct: 421 DALNYFSQMRSRTVKPDTFTYVSVITA 447
Score = 125 bits (314), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 148/329 (44%), Gaps = 32/329 (9%)
Query: 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEV 68
V K L + + L+ + R +A +F+ + + ++T++ + SD +
Sbjct: 60 VFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKA 119
Query: 69 LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128
L F ++ ++ + L C +L GK +H K G L L M
Sbjct: 120 LQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENM 179
Query: 129 YAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188
YAKC++++EA R+VFD + ++D+V W ++
Sbjct: 180 YAKCRQVNEA--------------------------------RKVFDRMPERDLVSWNTI 207
Query: 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248
+ G + ALE+ K M +E + P +VSVL A S+L + G+ +H + +++
Sbjct: 208 VAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGF 267
Query: 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308
+ TAL+DMY+KCGSLE A F ++VV+W +MI+ EA+ +F +
Sbjct: 268 DSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQK 327
Query: 309 MERKGIKPNEATFVSVLAACRHSGLITEG 337
M +G+KP + + + L AC G + G
Sbjct: 328 MLDEGVKPTDVSVMGALHACADLGDLERG 356
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 134/281 (47%), Gaps = 13/281 (4%)
Query: 122 ENALLLMYAKC---KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIV 178
E+ L+ +C KE+ + L L + G + L++ + VD A VF+ I
Sbjct: 37 EHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPID 96
Query: 179 DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRL 238
K VL+ +M+ G K ++AL+ F +M + V P +L C + L+ G+
Sbjct: 97 SKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKE 156
Query: 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+H ++++ + D F T L +MY+KC + EA F + +D+V+W T++ G + G+
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGM 216
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
AL + M + +KP+ T VSVL A LI+ G ++ Y ++ + V
Sbjct: 217 ARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHG-----YAMRSGFDSLV 271
Query: 359 ----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA 395
LVD+ ++ G L A + M E +S+ +++ A
Sbjct: 272 NISTALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDA 311
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 264 bits (675), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 139/413 (33%), Positives = 232/413 (56%), Gaps = 34/413 (8%)
Query: 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIV-ADKITLVILFSACARLEKLHYGKTVHCYA 110
WNTL+ Y + +S L++++ G+V D T L A + + G+T+H
Sbjct: 88 WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147
Query: 111 TKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLA 170
+ G ++ ++N+LL +YA C ++ A +
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYK------------------------------ 177
Query: 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230
VFD++ +KD+V W S+++G + +PEEAL L+ +M +G+ PD +VS+LSAC+ +
Sbjct: 178 --VFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKI 235
Query: 231 SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290
L G+ VH ++++ +T++ L+D+Y++CG +EEA F + K+ V+WT++I
Sbjct: 236 GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 295
Query: 291 EGLANYGLGNEALRVFYQMER-KGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR 349
GLA G G EA+ +F ME +G+ P E TFV +L AC H G++ EG + FRRM Y+
Sbjct: 296 VGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYK 355
Query: 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409
++P IEHF C+VDLL+RAG + +A E+IK MP + + ++ LL AC + + DL +
Sbjct: 356 IEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFAR 415
Query: 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+++L YVLLSN YA E W++V + R+ M +K PG+S++++
Sbjct: 416 IQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 468
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 160/329 (48%), Gaps = 51/329 (15%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H+ V ++ S IYV NSL+H Y A +FDKMP +D+ +WN S+ N
Sbjct: 139 LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN---SVIN 195
Query: 61 DFSDSG---EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY 117
F+++G E L L+ ++ +GI D T+V L SACA++ L GK VH Y KVGL
Sbjct: 196 GFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTR 255
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
L+ N LL +YA+C ++EA LFDEM
Sbjct: 256 NLHSSNVLLDLYARCGRVEEAKTLFDEM-------------------------------- 283
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYG 236
VDK+ V W S++ G +EA+ELFK M EG+ P E V +L ACS ++ G
Sbjct: 284 VDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG 343
Query: 237 -----RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-DVVTWTTMI 290
R+ + ++ I ++D+ ++ G +++A + +VV W T++
Sbjct: 344 FEYFRRMREEYKIEPRIEHFG----CMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 399
Query: 291 EGLANYGLGNEALRVFYQMERKGIKPNEA 319
+ G+ L F +++ ++PN +
Sbjct: 400 GACTVH--GDSDLAEFARIQILQLEPNHS 426
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 118/226 (52%), Gaps = 4/226 (1%)
Query: 170 AREVFDEIVDK-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG-VTPDEEVMVSVLSAC 227
A +VF +I ++ +W +++ G + A L+++M G V PD ++ A
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131
Query: 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287
+++++++ G +H ++++ +V+ +L+ +Y+ CG + A F K KD+V W
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGV 347
++I G A G EAL ++ +M KGIKP+ T VS+L+AC G +T G ++ M V
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV 251
Query: 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393
+ + L+DL +R G + +A+ M + +S+ +L+
Sbjct: 252 GLTR-NLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 295
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 264 bits (675), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 245/463 (52%), Gaps = 6/463 (1%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTD--ARVLFDKMPFRDVGSWNTLMSIYN 60
K +H HV + LD Y+ LI ++ + D AR + + + FR+ W ++ Y
Sbjct: 66 KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYA 125
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
E + ++ + E I T L AC ++ L+ G+ H ++ +
Sbjct: 126 IEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVY 185
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N ++ MY KC+ +D A ++FDEM R+++S LI Y + ++ A E+F+ + K
Sbjct: 186 VGNTMIDMYVKCESIDCARKVFDEM-PERDVISWTELIAAYARVGNMECAAELFESLPTK 244
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ G + +P+EALE F +M G+ DE + +SAC+ L +Y
Sbjct: 245 DMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAV 304
Query: 241 RFILQNNITQD--AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
+ ++ + + +ALIDMYSKCG++EEA+ F + K+V T+++MI GLA +G
Sbjct: 305 QIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGR 364
Query: 299 GNEALRVF-YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357
EAL +F Y + + IKPN TFV L AC HSGL+ +G Q+F M + VQPT +H+
Sbjct: 365 AQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHY 424
Query: 358 VCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417
C+VDLL R G L +A E IK M E + ALL AC ++ ++ + A ++ +L
Sbjct: 425 TCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEP 484
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
Y+LLSN YA G W V R+ +KE +K P S +
Sbjct: 485 DIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWV 527
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 130/309 (42%), Gaps = 71/309 (22%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY- 59
+G+ HA + +YVGN++I Y + AR +FD+MP RDV SW L++ Y
Sbjct: 167 LGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYA 226
Query: 60 ---------------------------NDFSDSG---EVLILFKQLIFEGIVADKITLVI 89
F+ + E L F ++ GI AD++T+
Sbjct: 227 RVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAG 286
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYM--LNMENALLLMYAKCKEMDEALRLFDEMGS 147
SACA+L Y A K G + + +AL+ MY+KC ++EA+ +F
Sbjct: 287 YISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVF----- 341
Query: 148 RRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKK 207
+S+N +K++ + SM+ G + +EAL LF
Sbjct: 342 ----MSMN-----------------------NKNVFTYSSMILGLATHGRAQEALHLFHY 374
Query: 208 MIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN---NITQDAFVKTALIDMYS 263
M+ + + P+ V L ACS + GR V + Q T+D + T ++D+
Sbjct: 375 MVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHY--TCMVDLLG 432
Query: 264 KCGSLEEAL 272
+ G L+EAL
Sbjct: 433 RTGRLQEAL 441
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/503 (31%), Positives = 258/503 (51%), Gaps = 40/503 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVG---------- 50
+GK +H + LD D +V S+ H Y R DAR +FD+M +DV
Sbjct: 134 VGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYA 193
Query: 51 -------------------------SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKI 85
SWN ++S +N E +++F+++ G D++
Sbjct: 194 RKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQV 253
Query: 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145
T+ + + E L+ G+ +H Y K GL + +A++ MY K + + LF++
Sbjct: 254 TVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQF 313
Query: 146 GSRRNIVSLNILINGYIDMELVDLAREVFD----EIVDKDIVLWRSMMHGCVKAKQPEEA 201
V N I G LVD A E+F+ + ++ ++V W S++ GC + + EA
Sbjct: 314 EMMEAGVC-NAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEA 372
Query: 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261
LELF++M GV P+ + S+L AC +++ L +GR H F ++ ++ + V +ALIDM
Sbjct: 373 LELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDM 432
Query: 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321
Y+KCG + + + F K++V W +++ G + +G E + +F + R +KP+ +F
Sbjct: 433 YAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISF 492
Query: 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381
S+L+AC GL EG + F+ M Y ++P +EH+ C+V+LL RAG L +A + IK MP
Sbjct: 493 TSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMP 552
Query: 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441
E + ALL++C + DL + A + L ++ YVLLSN YA +G WTEV
Sbjct: 553 FEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDS 612
Query: 442 ARRNMKELQTRKKPGNSIIDLKH 464
R M+ L +K PG S I +K+
Sbjct: 613 IRNKMESLGLKKNPGCSWIQVKN 635
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 212/475 (44%), Gaps = 75/475 (15%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDS 65
HA + K+ +D Y+ LI Y F DA ++ +P + S+++L+
Sbjct: 38 HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97
Query: 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125
+ + +F ++ G++ D L LF CA L GK +HC + GL+ ++ ++
Sbjct: 98 TQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSM 157
Query: 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM----ELVDLAREVFDEIVDKD 181
MY +C M +A ++FD M S +++V+ + L+ Y E+V + E+ ++ +
Sbjct: 158 FHMYMRCGRMGDARKVFDRM-SDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
IV W ++ G ++ +EA+ +F+K+ G PD+ + SVL + L GRL+H
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHG 276
Query: 242 FILQNNITQDAFVKTALIDMYSKCGS-------------LEEALVTFYKTDCK------- 281
++++ + +D V +A+IDMY K G +E + Y T
Sbjct: 277 YVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDK 336
Query: 282 ---------------DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326
+VV+WT++I G A G EAL +F +M+ G+KPN T S+L
Sbjct: 337 ALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLP 396
Query: 327 ACRHSGLITEG----------------------CQLFRRMGG------VYRVQPTIEHFV 358
AC + + G ++ + G V+ + PT ++ V
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPT-KNLV 455
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPA------EDKFISYKALLSACITYSEFDLGKK 407
C L++ + +A+E + I + + FIS+ +LLSAC D G K
Sbjct: 456 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWK 510
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/451 (32%), Positives = 237/451 (52%), Gaps = 41/451 (9%)
Query: 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQ 74
+ D + N ++ Y R F A+ FD+MPF+D SWNT+++ Y + + LF
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYS 180
Query: 75 LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134
++ + V+ NA++ Y +C +
Sbjct: 181 MMEKNEVS---------------------------------------WNAMISGYIECGD 201
Query: 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVF-DEIVDKDIVLWRSMMHGCV 193
+++A F ++ R +V+ +I GY+ + V+LA +F D V+K++V W +M+ G V
Sbjct: 202 LEKASHFF-KVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYV 260
Query: 194 KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF 253
+ +PE+ L+LF+ M++EG+ P+ + S L CS LS LQ GR +H+ + ++ + D
Sbjct: 261 ENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVT 320
Query: 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
T+LI MY KCG L +A F KDVV W MI G A +G ++AL +F +M
Sbjct: 321 ALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNK 380
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
I+P+ TFV+VL AC H+GL+ G F M Y+V+P +H+ C+VDLL RAG L +A
Sbjct: 381 IRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEA 440
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE 433
+ I+ MP + LL AC + +L + A +++L +Q+ YV L+N YA +
Sbjct: 441 LKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASK 500
Query: 434 GHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
W +VA R+ MKE K PG S I++++
Sbjct: 501 NRWEDVARVRKRMKESNVVKVPGYSWIEIRN 531
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 129/327 (39%), Gaps = 42/327 (12%)
Query: 109 YATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168
Y TK + + N ++ + ++D ALR+F M ++ I ++LI D +
Sbjct: 51 YLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMM 110
Query: 169 LAREVFDEIVD-------------------------------KDIVLWRSMMHGCVKAKQ 197
A ++FDEI + KD W +M+ G + +
Sbjct: 111 EAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGE 170
Query: 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257
E+A ELF M+++ M+S C L + H F + + TA
Sbjct: 171 MEKARELFYSMMEKNEV-SWNAMISGYIECGDLE-----KASHFFKVAP--VRGVVAWTA 222
Query: 258 LIDMYSKCGSLEEALVTFYK-TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
+I Y K +E A F T K++VTW MI G + L++F M +GI+P
Sbjct: 223 MITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRP 282
Query: 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376
N + S L C + G Q+ + + + L+ + + G L A +
Sbjct: 283 NSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCN-DVTALTSLISMYCKCGELGDAWKL 341
Query: 377 IKIMPAEDKFISYKALLSACITYSEFD 403
++M +D +++ A++S + D
Sbjct: 342 FEVMKKKD-VVAWNAMISGYAQHGNAD 367
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 4/176 (2%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H V+K+ L +D+ SLI Y + DA LF+ M +DV +WN ++S Y
Sbjct: 302 LGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYA 361
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT-VHCYATKVGLEYML 119
++ + L LF+++I I D IT V + AC ++ G +E
Sbjct: 362 QHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQP 421
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING---YIDMELVDLARE 172
+ ++ + + +++EAL+L M R + L+ + ++EL + A E
Sbjct: 422 DHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAE 477
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,985,077
Number of Sequences: 539616
Number of extensions: 6480873
Number of successful extensions: 22832
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 15861
Number of HSP's gapped (non-prelim): 2247
length of query: 465
length of database: 191,569,459
effective HSP length: 121
effective length of query: 344
effective length of database: 126,275,923
effective search space: 43438917512
effective search space used: 43438917512
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)