Query 012360
Match_columns 465
No_of_seqs 639 out of 2303
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 01:49:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 6.8E-72 1.5E-76 559.5 50.7 460 2-464 206-735 (857)
2 PLN03081 pentatricopeptide (PP 100.0 9.4E-72 2E-76 545.8 46.5 459 2-464 106-572 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.3E-65 2.8E-70 514.3 48.5 451 2-456 105-626 (857)
4 PLN03218 maturation of RBCL 1; 100.0 4.6E-65 1E-69 501.2 47.8 452 2-456 389-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.1E-64 4.5E-69 496.6 46.8 412 2-416 456-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 7.2E-61 1.6E-65 469.1 40.7 453 2-463 142-618 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.3E-31 7.1E-36 272.0 48.3 425 15-447 462-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4E-30 8.6E-35 264.0 48.6 423 20-451 433-868 (899)
9 PRK11447 cellulose synthase su 99.9 1.7E-22 3.6E-27 208.5 48.4 416 24-452 275-744 (1157)
10 PRK11447 cellulose synthase su 99.9 1.1E-21 2.4E-26 202.5 50.1 434 4-447 49-664 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 2.9E-22 6.2E-27 177.3 32.1 378 50-438 117-508 (966)
12 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-21 2.6E-26 190.0 39.9 250 195-449 307-571 (615)
13 KOG4626 O-linked N-acetylgluco 99.9 1.1E-22 2.3E-27 180.0 27.6 417 24-449 54-485 (966)
14 PRK11788 tetratricopeptide rep 99.9 6.6E-22 1.4E-26 182.5 30.9 301 126-457 42-355 (389)
15 PRK09782 bacteriophage N4 rece 99.9 4.1E-19 9E-24 175.8 45.6 432 2-450 127-707 (987)
16 PRK10049 pgaA outer membrane p 99.9 2.6E-19 5.7E-24 176.9 43.6 400 15-421 12-462 (765)
17 PRK15174 Vi polysaccharide exp 99.9 2.3E-19 5E-24 173.6 41.6 356 29-419 16-385 (656)
18 PRK11788 tetratricopeptide rep 99.9 1.3E-20 2.9E-25 173.9 31.1 284 58-345 44-345 (389)
19 PRK10049 pgaA outer membrane p 99.9 3.6E-19 7.9E-24 175.9 42.7 391 52-449 18-456 (765)
20 PRK15174 Vi polysaccharide exp 99.9 6E-19 1.3E-23 170.7 36.6 320 125-450 48-382 (656)
21 PRK09782 bacteriophage N4 rece 99.9 5.7E-18 1.2E-22 167.8 43.0 320 124-452 381-743 (987)
22 TIGR00990 3a0801s09 mitochondr 99.9 8.4E-18 1.8E-22 163.4 39.9 389 52-450 130-538 (615)
23 PRK14574 hmsH outer membrane p 99.9 7.2E-17 1.6E-21 156.8 45.2 421 25-448 41-512 (822)
24 PRK14574 hmsH outer membrane p 99.8 2E-16 4.2E-21 153.8 42.2 412 2-421 53-519 (822)
25 KOG2002 TPR-containing nuclear 99.8 3.3E-17 7.1E-22 152.9 34.5 427 16-449 268-745 (1018)
26 KOG2002 TPR-containing nuclear 99.8 1.6E-15 3.4E-20 141.9 34.0 418 26-450 207-676 (1018)
27 KOG2003 TPR repeat-containing 99.8 9.4E-16 2E-20 131.7 29.2 410 19-436 202-710 (840)
28 KOG4422 Uncharacterized conser 99.8 4.3E-14 9.4E-19 120.7 37.2 393 4-416 136-591 (625)
29 KOG1915 Cell cycle control pro 99.8 1.4E-13 3E-18 119.2 36.9 422 20-451 75-538 (677)
30 KOG0495 HAT repeat protein [RN 99.7 5.5E-13 1.2E-17 119.9 41.8 430 25-463 413-892 (913)
31 PF13429 TPR_15: Tetratricopep 99.7 8.9E-18 1.9E-22 146.9 11.5 256 187-447 13-275 (280)
32 KOG2076 RNA polymerase III tra 99.7 1.7E-14 3.7E-19 134.2 32.6 331 126-459 146-522 (895)
33 KOG4422 Uncharacterized conser 99.7 1.3E-13 2.7E-18 117.9 34.5 355 9-381 198-588 (625)
34 KOG2076 RNA polymerase III tra 99.7 4.8E-13 1E-17 124.7 37.7 421 23-448 144-694 (895)
35 KOG1915 Cell cycle control pro 99.7 1.9E-12 4.2E-17 112.2 37.1 435 2-448 92-584 (677)
36 KOG0495 HAT repeat protein [RN 99.7 9.8E-13 2.1E-17 118.4 36.6 428 15-459 377-854 (913)
37 KOG0547 Translocase of outer m 99.7 1.4E-13 3.1E-18 119.5 30.0 385 52-447 118-564 (606)
38 KOG2003 TPR repeat-containing 99.7 1.1E-13 2.4E-18 119.2 28.3 396 51-449 200-689 (840)
39 PRK10747 putative protoheme IX 99.7 9.3E-14 2E-18 127.1 29.1 285 132-448 97-389 (398)
40 PRK10747 putative protoheme IX 99.7 5.6E-13 1.2E-17 122.0 32.3 283 97-415 97-390 (398)
41 KOG1155 Anaphase-promoting com 99.7 2.6E-12 5.6E-17 111.2 33.0 256 189-448 234-494 (559)
42 TIGR00540 hemY_coli hemY prote 99.7 7.6E-13 1.7E-17 121.8 31.7 119 130-249 95-219 (409)
43 KOG1155 Anaphase-promoting com 99.6 2.8E-12 6E-17 111.0 31.2 284 92-378 235-531 (559)
44 KOG4318 Bicoid mRNA stability 99.6 1.5E-12 3.2E-17 121.1 31.2 426 4-453 11-598 (1088)
45 TIGR00540 hemY_coli hemY prote 99.6 1E-12 2.2E-17 121.0 29.2 280 162-448 95-398 (409)
46 PF13429 TPR_15: Tetratricopep 99.6 4.1E-15 8.8E-20 130.1 12.2 253 56-345 15-275 (280)
47 KOG1126 DNA-binding cell divis 99.6 1.4E-13 3.1E-18 124.2 21.7 276 166-450 334-621 (638)
48 KOG1126 DNA-binding cell divis 99.6 1.6E-13 3.4E-18 124.0 21.8 278 134-421 334-626 (638)
49 KOG0547 Translocase of outer m 99.6 1E-11 2.2E-16 108.2 30.4 386 22-417 119-568 (606)
50 KOG1173 Anaphase-promoting com 99.6 2.3E-11 5E-16 108.0 31.6 420 19-447 17-516 (611)
51 COG2956 Predicted N-acetylgluc 99.6 1.5E-11 3.2E-16 101.8 26.7 279 132-414 48-346 (389)
52 COG2956 Predicted N-acetylgluc 99.6 2E-11 4.4E-16 100.9 26.5 262 98-366 49-327 (389)
53 COG3071 HemY Uncharacterized e 99.5 3.2E-11 7E-16 102.8 27.8 284 132-447 97-388 (400)
54 COG3071 HemY Uncharacterized e 99.5 9.2E-11 2E-15 100.1 30.4 284 97-415 97-390 (400)
55 TIGR02521 type_IV_pilW type IV 99.5 3.5E-12 7.6E-17 108.9 22.2 198 251-449 30-232 (234)
56 KOG1840 Kinesin light chain [C 99.5 9.6E-12 2.1E-16 113.5 24.8 238 184-447 201-477 (508)
57 KOG1156 N-terminal acetyltrans 99.5 4.6E-09 1E-13 95.3 37.3 425 13-446 36-508 (700)
58 KOG4318 Bicoid mRNA stability 99.5 2.6E-11 5.6E-16 113.1 23.5 91 70-169 11-101 (1088)
59 KOG4162 Predicted calmodulin-b 99.5 1.6E-09 3.5E-14 100.1 33.4 425 9-449 314-783 (799)
60 KOG2047 mRNA splicing factor [ 99.4 8.2E-09 1.8E-13 93.5 35.4 114 332-447 564-685 (835)
61 KOG3785 Uncharacterized conser 99.4 1.3E-08 2.8E-13 85.7 32.5 415 25-454 29-495 (557)
62 KOG1129 TPR repeat-containing 99.4 9E-12 2E-16 103.1 13.6 226 186-448 227-457 (478)
63 KOG2376 Signal recognition par 99.4 1.2E-08 2.6E-13 91.7 34.0 404 24-444 18-515 (652)
64 PRK12370 invasion protein regu 99.4 2E-10 4.4E-15 109.9 24.7 256 181-449 255-535 (553)
65 KOG1174 Anaphase-promoting com 99.4 1.1E-08 2.4E-13 87.9 31.7 396 19-426 98-511 (564)
66 KOG1173 Anaphase-promoting com 99.4 1.4E-09 3E-14 97.0 27.3 261 116-380 241-515 (611)
67 COG3063 PilF Tfp pilus assembl 99.4 5.9E-11 1.3E-15 93.7 16.3 162 286-451 38-204 (250)
68 TIGR02521 type_IV_pilW type IV 99.4 2.7E-10 5.8E-15 97.2 21.8 199 182-415 31-232 (234)
69 PF13041 PPR_2: PPR repeat fam 99.4 2E-12 4.2E-17 79.4 5.9 50 47-96 1-50 (50)
70 PRK12370 invasion protein regu 99.4 2.5E-10 5.3E-15 109.4 23.0 225 216-448 255-501 (553)
71 PF12569 NARP1: NMDA receptor- 99.3 4.1E-08 9E-13 91.2 36.2 415 21-445 7-516 (517)
72 PRK11189 lipoprotein NlpI; Pro 99.3 4.1E-10 8.9E-15 98.8 22.2 220 192-419 36-269 (296)
73 KOG4340 Uncharacterized conser 99.3 1.9E-08 4.2E-13 82.7 29.6 412 20-452 12-446 (459)
74 KOG1156 N-terminal acetyltrans 99.3 3.5E-08 7.5E-13 89.7 33.7 434 20-463 10-487 (700)
75 KOG1129 TPR repeat-containing 99.3 6.1E-11 1.3E-15 98.3 14.7 196 250-449 221-424 (478)
76 PF13041 PPR_2: PPR repeat fam 99.3 6.3E-12 1.4E-16 77.2 6.8 50 180-229 1-50 (50)
77 KOG1174 Anaphase-promoting com 99.3 4.4E-08 9.6E-13 84.3 30.9 297 145-449 188-500 (564)
78 PRK11189 lipoprotein NlpI; Pro 99.3 3.9E-09 8.4E-14 92.7 23.8 215 230-451 39-267 (296)
79 KOG1840 Kinesin light chain [C 99.2 7.5E-09 1.6E-13 94.9 25.1 225 121-345 201-477 (508)
80 KOG3785 Uncharacterized conser 99.2 5E-08 1.1E-12 82.3 27.6 380 56-446 29-454 (557)
81 PF12569 NARP1: NMDA receptor- 99.2 1.9E-08 4.2E-13 93.3 28.0 287 126-447 11-332 (517)
82 KOG2047 mRNA splicing factor [ 99.2 7.3E-07 1.6E-11 81.3 36.7 402 35-448 92-578 (835)
83 COG3063 PilF Tfp pilus assembl 99.2 5.2E-09 1.1E-13 82.9 19.5 193 254-448 37-235 (250)
84 PF04733 Coatomer_E: Coatomer 99.2 2.6E-09 5.7E-14 92.3 19.7 250 160-421 10-271 (290)
85 KOG0548 Molecular co-chaperone 99.2 1.2E-07 2.6E-12 84.6 28.5 392 26-432 10-472 (539)
86 KOG0624 dsRNA-activated protei 99.2 6.8E-08 1.5E-12 81.2 25.4 302 117-424 36-379 (504)
87 KOG3616 Selective LIM binding 99.2 1E-07 2.2E-12 88.1 27.2 73 228-307 743-815 (1636)
88 KOG2376 Signal recognition par 99.1 1.6E-06 3.6E-11 78.3 33.7 380 56-449 19-487 (652)
89 KOG0624 dsRNA-activated protei 99.1 4E-07 8.7E-12 76.7 26.8 290 85-382 39-369 (504)
90 cd05804 StaR_like StaR_like; a 99.1 7.3E-07 1.6E-11 81.4 31.7 259 190-450 51-337 (355)
91 PF04733 Coatomer_E: Coatomer 99.1 1.6E-09 3.4E-14 93.6 13.0 245 190-449 9-265 (290)
92 KOG3617 WD40 and TPR repeat-co 99.1 1.3E-06 2.9E-11 81.9 32.0 234 17-277 725-992 (1416)
93 KOG4340 Uncharacterized conser 99.1 1.3E-07 2.7E-12 78.1 22.1 252 17-278 43-336 (459)
94 KOG1125 TPR repeat-containing 99.1 3.1E-09 6.8E-14 95.1 13.9 215 227-447 295-525 (579)
95 KOG0548 Molecular co-chaperone 99.1 9.8E-08 2.1E-12 85.1 22.8 374 57-450 10-456 (539)
96 KOG4162 Predicted calmodulin-b 99.0 3.1E-06 6.8E-11 79.0 31.6 381 60-450 295-750 (799)
97 PRK04841 transcriptional regul 99.0 2.3E-06 5E-11 88.4 33.6 323 128-450 383-761 (903)
98 cd05804 StaR_like StaR_like; a 99.0 3.1E-06 6.8E-11 77.2 30.9 193 222-416 119-337 (355)
99 TIGR03302 OM_YfiO outer membra 99.0 9.3E-08 2E-12 81.5 18.4 180 250-449 31-232 (235)
100 PRK10370 formate-dependent nit 98.9 8.3E-08 1.8E-12 78.4 16.6 117 331-449 52-173 (198)
101 KOG3616 Selective LIM binding 98.9 2.8E-06 6.1E-11 78.9 27.7 135 291-445 740-875 (1636)
102 PRK15359 type III secretion sy 98.9 6.9E-08 1.5E-12 74.6 13.7 123 304-432 14-138 (144)
103 KOG0985 Vesicle coat protein c 98.9 4.3E-05 9.4E-10 73.8 33.6 275 133-439 1089-1373(1666)
104 PF12854 PPR_1: PPR repeat 98.9 2.1E-09 4.7E-14 59.0 3.2 34 12-45 1-34 (34)
105 PRK04841 transcriptional regul 98.9 6E-06 1.3E-10 85.4 31.0 321 97-418 387-763 (903)
106 KOG3617 WD40 and TPR repeat-co 98.9 2.2E-05 4.9E-10 74.0 30.8 308 16-345 755-1172(1416)
107 KOG0985 Vesicle coat protein c 98.9 3.9E-05 8.4E-10 74.1 32.3 343 48-434 983-1327(1666)
108 KOG1070 rRNA processing protei 98.8 3.7E-07 8E-12 90.2 19.3 199 217-416 1458-1664(1710)
109 PRK15359 type III secretion sy 98.8 6.9E-08 1.5E-12 74.6 11.3 108 338-450 13-122 (144)
110 KOG3081 Vesicle coat complex C 98.8 6.3E-06 1.4E-10 67.3 22.5 251 160-421 17-277 (299)
111 KOG1128 Uncharacterized conser 98.8 1.7E-07 3.8E-12 86.6 15.1 193 249-448 395-615 (777)
112 PLN02789 farnesyltranstransfer 98.8 4.4E-06 9.4E-11 73.4 23.4 145 300-447 125-300 (320)
113 KOG1127 TPR repeat-containing 98.8 1E-05 2.2E-10 77.9 26.7 419 19-447 493-994 (1238)
114 KOG1127 TPR repeat-containing 98.8 4E-06 8.6E-11 80.5 23.4 374 64-445 473-909 (1238)
115 COG5010 TadD Flp pilus assembl 98.8 1.8E-06 4E-11 70.3 18.1 155 287-444 70-226 (257)
116 KOG1125 TPR repeat-containing 98.8 8.2E-07 1.8E-11 80.1 17.3 247 191-442 294-564 (579)
117 PRK10370 formate-dependent nit 98.7 1.4E-06 3E-11 71.2 17.1 152 259-421 23-179 (198)
118 KOG1914 mRNA cleavage and poly 98.7 0.00017 3.7E-09 65.1 34.7 147 299-447 347-499 (656)
119 COG5010 TadD Flp pilus assembl 98.7 1.5E-06 3.3E-11 70.8 16.4 134 315-450 63-198 (257)
120 KOG1128 Uncharacterized conser 98.7 2.5E-05 5.3E-10 72.9 25.6 226 153-396 400-633 (777)
121 PRK15179 Vi polysaccharide bio 98.7 2.3E-06 5E-11 82.9 19.7 131 282-416 85-218 (694)
122 PF12854 PPR_1: PPR repeat 98.7 3.3E-08 7E-13 54.3 4.3 32 313-344 2-33 (34)
123 KOG1070 rRNA processing protei 98.7 1.2E-05 2.5E-10 80.1 23.7 200 117-317 1456-1668(1710)
124 COG4783 Putative Zn-dependent 98.7 2.8E-05 6.1E-10 69.2 23.8 138 290-449 313-454 (484)
125 TIGR03302 OM_YfiO outer membra 98.7 1.1E-06 2.5E-11 74.8 15.1 181 216-417 32-234 (235)
126 KOG3081 Vesicle coat complex C 98.7 6.7E-06 1.5E-10 67.1 17.9 244 189-448 15-270 (299)
127 PRK15179 Vi polysaccharide bio 98.6 7.6E-06 1.7E-10 79.4 21.5 129 249-381 83-215 (694)
128 TIGR02552 LcrH_SycD type III s 98.6 6.6E-07 1.4E-11 68.8 11.1 99 321-421 20-120 (135)
129 PRK14720 transcript cleavage f 98.6 1.8E-05 3.9E-10 77.8 22.8 166 119-312 31-198 (906)
130 PRK15363 pathogenicity island 98.6 7.1E-07 1.5E-11 67.7 9.7 98 353-450 34-133 (157)
131 PLN02789 farnesyltranstransfer 98.6 0.00011 2.4E-09 64.7 24.8 226 193-424 48-311 (320)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 3E-06 6.5E-11 75.9 14.2 123 320-447 171-295 (395)
133 PRK14720 transcript cleavage f 98.5 0.00013 2.7E-09 72.0 26.0 233 86-365 33-268 (906)
134 COG4783 Putative Zn-dependent 98.5 2E-05 4.3E-10 70.2 18.4 164 281-449 272-437 (484)
135 KOG1914 mRNA cleavage and poly 98.5 0.00092 2E-08 60.6 37.4 425 15-445 17-535 (656)
136 TIGR02552 LcrH_SycD type III s 98.5 4.6E-06 9.9E-11 64.1 12.6 108 340-450 5-115 (135)
137 KOG3060 Uncharacterized conser 98.4 3.7E-05 8E-10 62.4 16.6 192 232-426 27-231 (289)
138 KOG2053 Mitochondrial inherita 98.4 0.0021 4.5E-08 62.0 36.1 410 29-454 20-507 (932)
139 PF09976 TPR_21: Tetratricopep 98.4 2E-05 4.4E-10 61.2 14.0 113 296-411 24-143 (145)
140 KOG3060 Uncharacterized conser 98.4 5.4E-05 1.2E-09 61.5 16.0 183 265-451 25-222 (289)
141 KOG2053 Mitochondrial inherita 98.3 0.0037 8.1E-08 60.3 39.4 380 28-416 53-537 (932)
142 PF09976 TPR_21: Tetratricopep 98.3 1.4E-05 3E-10 62.1 11.7 126 319-446 13-144 (145)
143 TIGR00756 PPR pentatricopeptid 98.3 1.3E-06 2.7E-11 48.9 4.4 35 50-84 1-35 (35)
144 PF13414 TPR_11: TPR repeat; P 98.3 2.2E-06 4.8E-11 56.8 6.3 65 385-449 2-67 (69)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 4.7E-05 1E-09 68.4 15.5 124 254-382 171-296 (395)
146 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.8E-05 3.9E-10 59.2 11.2 102 320-421 4-111 (119)
147 COG4235 Cytochrome c biogenesi 98.3 1.4E-05 3E-10 67.1 11.2 111 351-461 153-268 (287)
148 cd00189 TPR Tetratricopeptide 98.3 8.6E-06 1.9E-10 58.0 9.0 92 357-448 3-96 (100)
149 PF13812 PPR_3: Pentatricopept 98.3 1.9E-06 4.1E-11 47.8 4.2 33 50-82 2-34 (34)
150 PF12895 Apc3: Anaphase-promot 98.2 1E-06 2.2E-11 61.1 3.1 78 367-445 2-83 (84)
151 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.3E-05 7.3E-10 57.7 11.6 96 355-450 3-106 (119)
152 PF13432 TPR_16: Tetratricopep 98.2 5.5E-06 1.2E-10 54.1 6.1 58 392-449 3-60 (65)
153 KOG0550 Molecular chaperone (D 98.2 6.4E-05 1.4E-09 65.4 13.4 163 291-459 177-360 (486)
154 PF13812 PPR_3: Pentatricopept 98.1 4.7E-06 1E-10 46.1 4.2 33 183-215 2-34 (34)
155 TIGR00756 PPR pentatricopeptid 98.1 5.9E-06 1.3E-10 46.1 4.6 33 285-317 2-34 (35)
156 PLN03088 SGT1, suppressor of 98.1 1.1E-05 2.5E-10 72.6 8.5 107 323-431 7-115 (356)
157 KOG0553 TPR repeat-containing 98.1 3E-05 6.6E-10 64.7 9.5 108 328-437 91-200 (304)
158 PRK02603 photosystem I assembl 98.1 6.8E-05 1.5E-09 60.2 11.0 82 354-435 35-121 (172)
159 PLN03088 SGT1, suppressor of 98.1 7.1E-05 1.5E-09 67.5 12.2 97 289-389 8-106 (356)
160 COG4700 Uncharacterized protei 98.0 0.0018 3.9E-08 50.3 17.3 130 315-446 86-219 (251)
161 cd00189 TPR Tetratricopeptide 98.0 6E-05 1.3E-09 53.5 9.3 93 323-417 5-99 (100)
162 PF14559 TPR_19: Tetratricopep 98.0 1.6E-05 3.4E-10 52.5 5.3 54 397-450 2-55 (68)
163 PF13432 TPR_16: Tetratricopep 98.0 1.7E-05 3.7E-10 51.7 5.3 61 360-420 3-65 (65)
164 PF13371 TPR_9: Tetratricopept 98.0 3.5E-05 7.7E-10 51.6 6.8 58 394-451 3-60 (73)
165 PRK10153 DNA-binding transcrip 98.0 0.00041 9E-09 65.5 16.0 140 280-421 334-488 (517)
166 KOG0553 TPR repeat-containing 98.0 3.1E-05 6.8E-10 64.6 7.5 88 362-449 89-178 (304)
167 CHL00033 ycf3 photosystem I as 98.0 0.00012 2.7E-09 58.4 10.7 112 335-446 16-139 (168)
168 PF05843 Suf: Suppressor of fo 97.9 0.00033 7.2E-09 60.9 14.0 135 284-421 2-142 (280)
169 PF14938 SNAP: Soluble NSF att 97.9 0.002 4.4E-08 56.3 18.9 219 33-290 30-275 (282)
170 PF01535 PPR: PPR repeat; Int 97.9 1.8E-05 3.9E-10 42.6 3.5 31 50-80 1-31 (31)
171 PF12895 Apc3: Anaphase-promot 97.9 2.1E-05 4.6E-10 54.4 4.7 80 296-378 2-82 (84)
172 PF04840 Vps16_C: Vps16, C-ter 97.9 0.015 3.3E-07 51.3 25.5 109 319-444 178-286 (319)
173 PRK02603 photosystem I assembl 97.9 0.00032 6.9E-09 56.3 11.9 130 282-434 34-165 (172)
174 KOG2280 Vacuolar assembly/sort 97.9 0.014 3.1E-07 55.4 23.5 111 253-379 685-795 (829)
175 PF10037 MRP-S27: Mitochondria 97.8 0.00017 3.6E-09 65.3 10.4 107 17-123 65-177 (429)
176 KOG2041 WD40 repeat protein [G 97.8 0.031 6.7E-07 52.8 28.2 247 33-311 678-951 (1189)
177 PF07079 DUF1347: Protein of u 97.8 0.023 4.9E-07 50.9 32.1 409 27-447 15-522 (549)
178 PF08579 RPM2: Mitochondrial r 97.8 0.00032 7E-09 49.5 9.1 80 52-131 28-116 (120)
179 PF05843 Suf: Suppressor of fo 97.8 0.00027 5.8E-09 61.5 10.4 129 319-449 2-136 (280)
180 PF13414 TPR_11: TPR repeat; P 97.7 6.9E-05 1.5E-09 49.6 4.9 65 353-417 2-69 (69)
181 PF08579 RPM2: Mitochondrial r 97.7 0.00093 2E-08 47.3 10.3 81 185-265 28-117 (120)
182 PRK15331 chaperone protein Sic 97.7 0.00033 7.1E-09 53.7 8.8 82 365-446 48-131 (165)
183 CHL00033 ycf3 photosystem I as 97.7 0.00084 1.8E-08 53.6 11.9 100 321-420 38-154 (168)
184 PRK10866 outer membrane biogen 97.7 0.0034 7.3E-08 53.3 16.0 171 257-446 37-238 (243)
185 PF01535 PPR: PPR repeat; Int 97.7 5.6E-05 1.2E-09 40.6 3.5 29 285-313 2-30 (31)
186 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.034 7.4E-07 49.8 31.4 128 320-448 399-530 (660)
187 PF03704 BTAD: Bacterial trans 97.7 0.001 2.2E-08 51.7 11.8 69 388-456 64-137 (146)
188 PF12688 TPR_5: Tetratrico pep 97.7 0.00066 1.4E-08 49.9 9.5 55 389-443 41-98 (120)
189 PRK10866 outer membrane biogen 97.7 0.023 5E-07 48.2 20.3 58 323-380 180-238 (243)
190 PRK15363 pathogenicity island 97.7 0.0046 1E-07 47.3 14.1 90 325-416 42-133 (157)
191 PRK10153 DNA-binding transcrip 97.6 0.0026 5.7E-08 60.2 15.5 135 313-451 332-484 (517)
192 PF06239 ECSIT: Evolutionarily 97.6 0.0013 2.9E-08 52.7 11.3 97 171-267 34-153 (228)
193 PF10037 MRP-S27: Mitochondria 97.6 0.0024 5.1E-08 58.0 14.4 120 212-331 61-186 (429)
194 PF14559 TPR_19: Tetratricopep 97.6 5.4E-05 1.2E-09 49.9 3.1 50 330-381 3-52 (68)
195 PF13428 TPR_14: Tetratricopep 97.6 0.00018 4E-09 42.3 4.6 42 387-428 2-43 (44)
196 PF13281 DUF4071: Domain of un 97.6 0.02 4.3E-07 51.0 18.9 165 254-421 143-340 (374)
197 PF14938 SNAP: Soluble NSF att 97.5 0.05 1.1E-06 47.7 25.8 96 286-381 158-264 (282)
198 PRK10803 tol-pal system protei 97.5 0.0011 2.4E-08 56.7 10.7 100 319-421 144-252 (263)
199 PF13431 TPR_17: Tetratricopep 97.5 8E-05 1.7E-09 40.8 2.5 33 408-440 1-33 (34)
200 PF04840 Vps16_C: Vps16, C-ter 97.5 0.056 1.2E-06 47.8 30.2 107 256-379 181-287 (319)
201 KOG0543 FKBP-type peptidyl-pro 97.5 0.0013 2.8E-08 57.8 11.0 95 354-448 257-354 (397)
202 PF06239 ECSIT: Evolutionarily 97.5 0.0014 2.9E-08 52.7 10.2 97 38-134 34-153 (228)
203 KOG2041 WD40 repeat protein [G 97.5 0.045 9.9E-07 51.7 21.1 155 32-207 748-903 (1189)
204 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.064 1.4E-06 48.1 27.1 134 284-421 398-537 (660)
205 KOG2796 Uncharacterized conser 97.5 0.011 2.3E-07 48.9 14.9 130 183-312 178-315 (366)
206 PF12688 TPR_5: Tetratrico pep 97.5 0.0048 1E-07 45.4 11.8 92 289-380 7-101 (120)
207 PF07079 DUF1347: Protein of u 97.5 0.074 1.6E-06 47.8 31.4 128 2-131 25-179 (549)
208 KOG1130 Predicted G-alpha GTPa 97.5 0.00053 1.1E-08 59.9 7.8 130 319-448 196-343 (639)
209 KOG0550 Molecular chaperone (D 97.5 0.035 7.6E-07 49.1 18.6 85 293-380 259-347 (486)
210 PF13371 TPR_9: Tetratricopept 97.5 0.00058 1.3E-08 45.7 6.5 63 361-423 2-66 (73)
211 KOG2280 Vacuolar assembly/sort 97.5 0.12 2.5E-06 49.6 31.7 351 60-443 400-793 (829)
212 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00061 1.3E-08 61.2 8.1 97 353-452 74-177 (453)
213 PRK10803 tol-pal system protei 97.4 0.0014 3.1E-08 56.0 10.1 94 286-381 146-244 (263)
214 COG4235 Cytochrome c biogenesi 97.4 0.0079 1.7E-07 51.0 13.8 110 315-427 153-267 (287)
215 COG4700 Uncharacterized protei 97.4 0.046 1E-06 42.8 16.2 124 249-377 86-216 (251)
216 KOG1538 Uncharacterized conser 97.3 0.033 7.2E-07 52.1 17.9 91 125-243 709-799 (1081)
217 KOG2796 Uncharacterized conser 97.3 0.026 5.7E-07 46.7 15.2 137 285-421 179-321 (366)
218 PF13525 YfiO: Outer membrane 97.3 0.057 1.2E-06 44.6 17.8 177 189-374 12-198 (203)
219 PF13424 TPR_12: Tetratricopep 97.3 0.00049 1.1E-08 46.7 4.7 62 387-448 6-74 (78)
220 PF13525 YfiO: Outer membrane 97.3 0.012 2.7E-07 48.5 13.8 50 392-441 147-199 (203)
221 KOG1538 Uncharacterized conser 97.2 0.037 8.1E-07 51.8 16.7 245 148-414 553-845 (1081)
222 KOG1130 Predicted G-alpha GTPa 97.2 0.0039 8.4E-08 54.8 9.8 276 57-345 25-342 (639)
223 COG3898 Uncharacterized membra 97.1 0.2 4.3E-06 44.3 29.0 244 132-382 133-391 (531)
224 PRK15331 chaperone protein Sic 97.0 0.055 1.2E-06 41.8 13.6 94 324-420 43-138 (165)
225 COG3898 Uncharacterized membra 97.0 0.23 4.9E-06 43.9 26.5 243 193-448 131-391 (531)
226 PF13512 TPR_18: Tetratricopep 97.0 0.021 4.5E-07 43.0 10.7 88 361-448 17-127 (142)
227 KOG1585 Protein required for f 97.0 0.085 1.8E-06 43.3 14.7 48 393-441 197-248 (308)
228 KOG1258 mRNA processing protei 96.9 0.37 8.1E-06 45.2 30.1 382 48-435 44-490 (577)
229 PF13424 TPR_12: Tetratricopep 96.9 0.0015 3.3E-08 44.2 3.9 60 356-415 7-75 (78)
230 KOG0543 FKBP-type peptidyl-pro 96.9 0.0051 1.1E-07 54.2 7.8 64 387-450 258-321 (397)
231 PF12921 ATP13: Mitochondrial 96.8 0.016 3.5E-07 43.2 9.2 53 313-365 47-99 (126)
232 PF13281 DUF4071: Domain of un 96.8 0.08 1.7E-06 47.3 14.7 31 181-211 304-334 (374)
233 PF10300 DUF3808: Protein of u 96.7 0.12 2.6E-06 48.7 16.6 116 331-449 246-376 (468)
234 COG1729 Uncharacterized protei 96.7 0.015 3.3E-07 48.7 9.4 101 320-421 144-250 (262)
235 KOG4555 TPR repeat-containing 96.7 0.017 3.7E-07 42.1 8.2 86 364-449 53-144 (175)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.016 3.4E-07 52.5 9.8 96 317-416 74-175 (453)
237 PF03704 BTAD: Bacterial trans 96.6 0.11 2.5E-06 40.2 13.4 71 184-255 64-139 (146)
238 COG1729 Uncharacterized protei 96.6 0.016 3.6E-07 48.5 8.6 93 356-449 144-244 (262)
239 PRK11906 transcriptional regul 96.6 0.046 9.9E-07 49.7 11.7 142 299-443 274-430 (458)
240 KOG2610 Uncharacterized conser 96.5 0.13 2.8E-06 44.4 13.2 150 295-447 115-274 (491)
241 COG3118 Thioredoxin domain-con 96.4 0.53 1.2E-05 40.2 16.4 146 292-439 143-291 (304)
242 KOG2066 Vacuolar assembly/sort 96.3 1.1 2.5E-05 43.5 25.2 153 125-283 362-536 (846)
243 COG3118 Thioredoxin domain-con 96.3 0.43 9.3E-06 40.7 15.2 121 326-449 142-265 (304)
244 KOG2114 Vacuolar assembly/sort 96.3 1.3 2.8E-05 43.5 28.7 177 20-208 336-516 (933)
245 KOG2610 Uncharacterized conser 96.3 0.06 1.3E-06 46.3 10.2 116 329-446 114-235 (491)
246 smart00299 CLH Clathrin heavy 96.2 0.37 8E-06 37.0 15.9 127 285-431 9-136 (140)
247 PRK11619 lytic murein transgly 96.2 1.4 3.1E-05 43.4 29.2 115 296-413 254-373 (644)
248 PF07719 TPR_2: Tetratricopept 96.2 0.013 2.7E-07 31.9 4.1 32 388-419 3-34 (34)
249 PF02259 FAT: FAT domain; Int 96.2 0.96 2.1E-05 41.2 21.4 149 282-433 145-305 (352)
250 COG4105 ComL DNA uptake lipopr 96.2 0.63 1.4E-05 39.0 18.7 56 391-446 172-230 (254)
251 PF13512 TPR_18: Tetratricopep 96.2 0.2 4.2E-06 37.9 11.4 114 290-421 17-134 (142)
252 PF00515 TPR_1: Tetratricopept 96.1 0.01 2.2E-07 32.3 3.5 31 388-418 3-33 (34)
253 COG0457 NrfG FOG: TPR repeat [ 96.1 0.73 1.6E-05 38.7 26.2 219 196-418 37-268 (291)
254 PF04053 Coatomer_WDAD: Coatom 96.0 0.36 7.8E-06 44.9 15.0 129 122-276 298-426 (443)
255 KOG3941 Intermediate in Toll s 96.0 0.058 1.3E-06 45.2 8.7 97 38-134 54-173 (406)
256 PF04184 ST7: ST7 protein; In 96.0 0.59 1.3E-05 43.0 15.4 103 319-421 260-381 (539)
257 PF12921 ATP13: Mitochondrial 95.9 0.16 3.4E-06 37.9 9.9 92 119-226 2-97 (126)
258 KOG4234 TPR repeat-containing 95.9 0.033 7E-07 44.1 6.4 99 325-425 102-207 (271)
259 KOG1258 mRNA processing protei 95.9 1.7 3.6E-05 41.1 27.6 338 83-440 44-420 (577)
260 KOG4555 TPR repeat-containing 95.8 0.037 8E-07 40.4 6.0 57 393-449 50-106 (175)
261 KOG3941 Intermediate in Toll s 95.7 0.16 3.5E-06 42.7 10.1 90 179-268 64-174 (406)
262 PF09205 DUF1955: Domain of un 95.7 0.56 1.2E-05 34.6 14.7 140 293-451 12-151 (161)
263 smart00299 CLH Clathrin heavy 95.6 0.76 1.6E-05 35.2 15.5 126 51-192 9-135 (140)
264 KOG1920 IkappaB kinase complex 95.5 3.5 7.6E-05 42.4 22.8 115 258-383 914-1028(1265)
265 COG3629 DnrI DNA-binding trans 95.5 0.078 1.7E-06 45.3 7.8 60 388-447 155-214 (280)
266 PRK11906 transcriptional regul 95.3 0.95 2.1E-05 41.6 14.3 142 267-413 273-434 (458)
267 PF04053 Coatomer_WDAD: Coatom 95.3 0.83 1.8E-05 42.6 14.5 158 57-242 269-427 (443)
268 KOG1941 Acetylcholine receptor 95.2 0.31 6.7E-06 42.7 10.5 123 323-445 127-271 (518)
269 COG0457 NrfG FOG: TPR repeat [ 95.2 1.6 3.5E-05 36.5 24.3 216 231-448 37-264 (291)
270 PF08631 SPO22: Meiosis protei 95.1 2.1 4.6E-05 37.4 22.2 15 131-145 5-19 (278)
271 PF13176 TPR_7: Tetratricopept 95.1 0.051 1.1E-06 30.1 3.7 25 389-413 2-26 (36)
272 PF13181 TPR_8: Tetratricopept 94.9 0.06 1.3E-06 29.2 3.9 31 388-418 3-33 (34)
273 COG2976 Uncharacterized protei 94.9 1.6 3.4E-05 35.0 13.6 116 301-419 70-192 (207)
274 COG2976 Uncharacterized protei 94.9 0.71 1.5E-05 36.8 10.8 125 319-450 55-189 (207)
275 COG4649 Uncharacterized protei 94.8 1 2.3E-05 35.1 11.2 129 284-414 60-195 (221)
276 PF08631 SPO22: Meiosis protei 94.7 2.6 5.7E-05 36.8 22.9 157 60-217 4-192 (278)
277 KOG1920 IkappaB kinase complex 94.6 6.3 0.00014 40.7 21.2 128 193-345 919-1053(1265)
278 KOG1941 Acetylcholine receptor 94.6 0.57 1.2E-05 41.1 10.4 165 285-449 45-235 (518)
279 PF09205 DUF1955: Domain of un 94.5 1.4 3.1E-05 32.6 13.2 63 185-248 89-151 (161)
280 PF13176 TPR_7: Tetratricopept 94.4 0.057 1.2E-06 29.9 2.9 26 422-447 1-26 (36)
281 COG4785 NlpI Lipoprotein NlpI, 94.4 2.3 4.9E-05 34.7 14.0 158 283-448 99-265 (297)
282 PF10300 DUF3808: Protein of u 94.4 4.8 0.0001 38.2 21.8 80 166-245 248-333 (468)
283 PF07035 Mic1: Colon cancer-as 94.3 2.1 4.5E-05 33.7 14.1 58 184-245 91-148 (167)
284 PF04184 ST7: ST7 protein; In 94.2 1.5 3.3E-05 40.5 12.6 69 354-422 259-332 (539)
285 PF09613 HrpB1_HrpK: Bacterial 93.9 2.2 4.7E-05 33.1 11.3 50 330-382 22-72 (160)
286 PF13174 TPR_6: Tetratricopept 93.9 0.14 3E-06 27.4 3.8 29 391-419 5-33 (33)
287 KOG2114 Vacuolar assembly/sort 93.6 8.3 0.00018 38.3 21.7 175 154-345 337-517 (933)
288 PF13428 TPR_14: Tetratricopep 93.6 0.18 3.9E-06 29.4 4.2 30 421-450 2-31 (44)
289 COG4105 ComL DNA uptake lipopr 93.4 4.2 9E-05 34.3 19.6 56 191-246 43-100 (254)
290 PF13374 TPR_10: Tetratricopep 93.4 0.17 3.7E-06 28.9 3.9 27 388-414 4-30 (42)
291 KOG0890 Protein kinase of the 93.3 17 0.00037 40.9 23.5 145 54-206 1388-1542(2382)
292 PF09613 HrpB1_HrpK: Bacterial 93.3 0.56 1.2E-05 36.3 7.3 82 356-437 9-95 (160)
293 TIGR02561 HrpB1_HrpK type III 93.3 0.53 1.2E-05 35.7 6.9 71 365-437 21-95 (153)
294 PF00637 Clathrin: Region in C 92.8 0.37 8.1E-06 37.1 6.1 83 90-176 13-95 (143)
295 PRK09687 putative lyase; Provi 92.6 6.6 0.00014 34.3 25.8 62 352-417 204-265 (280)
296 PF07719 TPR_2: Tetratricopept 92.6 0.3 6.4E-06 26.3 3.9 30 421-450 2-31 (34)
297 KOG1586 Protein required for f 92.6 5.3 0.00011 33.1 13.7 24 397-420 165-188 (288)
298 PF10602 RPN7: 26S proteasome 92.5 2.7 5.8E-05 33.7 10.7 95 285-381 38-140 (177)
299 COG1747 Uncharacterized N-term 92.5 9.1 0.0002 35.7 19.9 163 214-382 63-233 (711)
300 KOG4648 Uncharacterized conser 92.4 0.48 1E-05 41.2 6.5 92 327-421 106-200 (536)
301 KOG4648 Uncharacterized conser 92.4 0.48 1E-05 41.2 6.4 88 361-448 104-193 (536)
302 PF00515 TPR_1: Tetratricopept 92.3 0.35 7.5E-06 26.1 3.9 30 421-450 2-31 (34)
303 PRK11619 lytic murein transgly 92.3 13 0.00028 36.9 36.0 319 116-440 126-496 (644)
304 PF10602 RPN7: 26S proteasome 92.2 1.9 4.2E-05 34.5 9.5 94 50-145 37-139 (177)
305 PRK15180 Vi polysaccharide bio 92.1 2.5 5.4E-05 38.8 10.8 125 293-421 299-426 (831)
306 KOG4570 Uncharacterized conser 92.1 0.77 1.7E-05 39.5 7.2 102 12-114 58-165 (418)
307 COG4455 ImpE Protein of avirul 92.0 0.59 1.3E-05 37.9 6.1 65 357-421 4-70 (273)
308 PRK09687 putative lyase; Provi 91.9 8.1 0.00017 33.8 25.8 231 45-291 33-275 (280)
309 COG3629 DnrI DNA-binding trans 91.8 1.2 2.6E-05 38.3 8.2 59 119-177 153-213 (280)
310 KOG4234 TPR repeat-containing 91.7 3.3 7.1E-05 33.4 9.7 87 292-382 104-196 (271)
311 PF13170 DUF4003: Protein of u 91.5 7.8 0.00017 34.1 13.1 144 300-445 79-242 (297)
312 PF00637 Clathrin: Region in C 91.4 0.26 5.7E-06 38.0 3.8 129 54-197 12-140 (143)
313 smart00028 TPR Tetratricopepti 91.3 0.47 1E-05 24.6 3.9 29 389-417 4-32 (34)
314 PF07721 TPR_4: Tetratricopept 90.9 0.37 8.1E-06 24.2 2.8 23 422-444 3-25 (26)
315 KOG1550 Extracellular protein 90.8 15 0.00032 35.9 15.7 149 296-452 262-429 (552)
316 KOG0545 Aryl-hydrocarbon recep 90.5 3.3 7.1E-05 34.5 9.1 57 391-447 235-291 (329)
317 KOG2066 Vacuolar assembly/sort 90.5 19 0.00042 35.6 24.3 54 56-111 363-419 (846)
318 KOG0276 Vesicle coat complex C 90.2 5.8 0.00012 37.8 11.3 99 294-411 648-746 (794)
319 KOG1308 Hsp70-interacting prot 90.0 0.16 3.5E-06 44.0 1.5 85 330-416 126-212 (377)
320 PF07035 Mic1: Colon cancer-as 89.9 8.2 0.00018 30.4 13.7 133 69-210 14-148 (167)
321 PRK10941 hypothetical protein; 89.8 2.2 4.7E-05 36.8 8.1 61 389-449 184-244 (269)
322 PRK12798 chemotaxis protein; R 89.8 16 0.00034 33.4 20.8 181 265-448 125-323 (421)
323 KOG1585 Protein required for f 89.8 11 0.00024 31.6 17.0 85 51-145 33-117 (308)
324 PF13374 TPR_10: Tetratricopep 89.7 0.72 1.6E-05 26.1 3.7 28 421-448 3-30 (42)
325 KOG0890 Protein kinase of the 89.4 44 0.00095 38.0 23.8 315 124-449 1388-1731(2382)
326 PF13170 DUF4003: Protein of u 89.3 15 0.00032 32.4 14.7 134 198-361 78-224 (297)
327 TIGR02508 type_III_yscG type I 89.1 2.4 5.2E-05 29.6 6.2 50 27-78 48-97 (115)
328 cd00923 Cyt_c_Oxidase_Va Cytoc 89.0 2.8 6.1E-05 29.1 6.4 59 301-361 25-83 (103)
329 PF11207 DUF2989: Protein of u 89.0 3.3 7.2E-05 33.5 7.9 74 365-440 118-198 (203)
330 PF13174 TPR_6: Tetratricopept 88.7 0.71 1.5E-05 24.5 3.0 28 422-449 2-29 (33)
331 PF13431 TPR_17: Tetratricopep 88.7 0.64 1.4E-05 25.2 2.7 24 116-139 10-33 (34)
332 PF13181 TPR_8: Tetratricopept 88.6 1.1 2.4E-05 23.9 3.8 29 422-450 3-31 (34)
333 PF02284 COX5A: Cytochrome c o 88.5 6.3 0.00014 27.8 7.9 60 301-362 28-87 (108)
334 cd00923 Cyt_c_Oxidase_Va Cytoc 88.5 3.1 6.6E-05 28.9 6.3 47 66-112 24-70 (103)
335 KOG4570 Uncharacterized conser 88.3 4.4 9.6E-05 35.1 8.6 49 298-346 115-163 (418)
336 PF02284 COX5A: Cytochrome c o 88.1 2.3 4.9E-05 29.9 5.6 42 70-111 31-72 (108)
337 PF06552 TOM20_plant: Plant sp 88.0 4.1 8.9E-05 32.3 7.7 42 402-450 96-137 (186)
338 COG4649 Uncharacterized protei 87.4 13 0.00028 29.4 14.9 120 262-382 68-195 (221)
339 PF14853 Fis1_TPR_C: Fis1 C-te 87.3 1.3 2.8E-05 27.0 3.7 31 391-421 6-36 (53)
340 TIGR02508 type_III_yscG type I 87.3 8.2 0.00018 27.1 9.2 86 232-321 20-105 (115)
341 KOG4642 Chaperone-dependent E3 87.2 2.6 5.6E-05 35.0 6.4 84 328-414 20-106 (284)
342 KOG1550 Extracellular protein 87.2 31 0.00068 33.7 22.3 270 167-449 228-538 (552)
343 PRK15180 Vi polysaccharide bio 87.1 5.1 0.00011 36.9 8.8 133 259-394 296-433 (831)
344 COG5159 RPN6 26S proteasome re 87.1 8.9 0.00019 32.8 9.6 49 289-337 9-64 (421)
345 PF02259 FAT: FAT domain; Int 86.8 24 0.00052 32.0 19.1 188 188-381 4-211 (352)
346 PF13762 MNE1: Mitochondrial s 86.7 5.7 0.00012 30.3 7.6 81 52-132 42-128 (145)
347 COG3947 Response regulator con 86.7 20 0.00043 31.0 15.1 59 389-447 282-340 (361)
348 smart00386 HAT HAT (Half-A-TPR 86.6 2 4.3E-05 22.5 4.1 30 400-429 1-30 (33)
349 PF14561 TPR_20: Tetratricopep 86.3 3.4 7.3E-05 28.7 5.9 62 385-446 21-85 (90)
350 COG4785 NlpI Lipoprotein NlpI, 86.1 18 0.00038 29.8 16.9 176 230-416 78-267 (297)
351 PF04097 Nic96: Nup93/Nic96; 85.7 40 0.00087 33.5 21.0 21 364-384 515-535 (613)
352 PF11207 DUF2989: Protein of u 85.6 8.6 0.00019 31.2 8.5 73 198-271 122-197 (203)
353 PF10579 Rapsyn_N: Rapsyn N-te 85.5 2.3 5E-05 28.3 4.4 47 398-444 18-67 (80)
354 TIGR03504 FimV_Cterm FimV C-te 85.2 1.8 4E-05 25.1 3.5 26 424-449 3-28 (44)
355 KOG4279 Serine/threonine prote 85.1 28 0.0006 34.5 12.8 187 183-421 202-401 (1226)
356 KOG4507 Uncharacterized conser 84.9 3.5 7.6E-05 39.0 6.8 95 331-428 620-718 (886)
357 KOG2471 TPR repeat-containing 84.9 34 0.00074 32.0 16.0 104 259-365 247-380 (696)
358 KOG1464 COP9 signalosome, subu 84.5 25 0.00053 30.0 21.0 114 133-246 41-174 (440)
359 COG1747 Uncharacterized N-term 84.3 38 0.00081 32.0 21.1 175 181-364 65-249 (711)
360 COG2909 MalT ATP-dependent tra 84.2 51 0.0011 33.5 25.1 215 228-445 426-684 (894)
361 TIGR02561 HrpB1_HrpK type III 83.9 17 0.00038 27.8 11.9 17 329-345 55-71 (153)
362 TIGR03504 FimV_Cterm FimV C-te 83.3 3.1 6.8E-05 24.2 3.9 25 188-212 5-29 (44)
363 PF09477 Type_III_YscG: Bacter 82.9 15 0.00032 26.3 8.7 79 232-313 21-99 (116)
364 KOG3364 Membrane protein invol 82.4 16 0.00034 27.5 8.0 71 351-421 29-106 (149)
365 COG4455 ImpE Protein of avirul 81.5 8.2 0.00018 31.7 6.8 19 124-142 40-58 (273)
366 PF10579 Rapsyn_N: Rapsyn N-te 81.2 6.5 0.00014 26.2 5.1 46 295-340 18-65 (80)
367 PF06552 TOM20_plant: Plant sp 80.7 3.8 8.3E-05 32.4 4.7 45 402-446 51-99 (186)
368 PF08311 Mad3_BUB1_I: Mad3/BUB 79.5 19 0.00042 26.9 8.1 42 404-445 81-124 (126)
369 KOG2396 HAT (Half-A-TPR) repea 79.3 57 0.0012 30.8 33.6 96 352-447 457-557 (568)
370 PF13929 mRNA_stabil: mRNA sta 79.1 42 0.00092 29.2 12.3 123 52-177 134-264 (292)
371 PF07163 Pex26: Pex26 protein; 79.0 29 0.00062 29.9 9.5 85 189-275 90-181 (309)
372 PF09670 Cas_Cas02710: CRISPR- 78.9 40 0.00086 31.1 11.4 54 292-346 140-197 (379)
373 COG3947 Response regulator con 77.8 47 0.001 28.9 13.3 59 356-414 281-341 (361)
374 KOG0276 Vesicle coat complex C 77.5 21 0.00045 34.3 9.0 133 19-177 615-747 (794)
375 KOG4642 Chaperone-dependent E3 76.9 33 0.00072 28.8 9.0 113 293-410 20-141 (284)
376 KOG0376 Serine-threonine phosp 76.6 2.4 5.2E-05 39.0 2.9 95 324-421 10-107 (476)
377 KOG1464 COP9 signalosome, subu 76.4 48 0.001 28.4 17.2 58 187-244 150-218 (440)
378 PF12862 Apc5: Anaphase-promot 75.4 12 0.00027 26.1 5.8 52 397-448 9-69 (94)
379 PF09986 DUF2225: Uncharacteri 75.4 24 0.00051 29.4 8.2 64 389-452 121-197 (214)
380 KOG4077 Cytochrome c oxidase, 74.6 21 0.00045 26.4 6.5 58 302-361 68-125 (149)
381 KOG2396 HAT (Half-A-TPR) repea 74.1 81 0.0018 29.8 28.8 392 14-420 101-565 (568)
382 PRK13800 putative oxidoreducta 73.9 1.2E+02 0.0027 31.9 27.8 255 171-447 624-879 (897)
383 PF10345 Cohesin_load: Cohesin 73.7 1E+02 0.0022 30.8 36.5 183 264-447 373-604 (608)
384 PRK10941 hypothetical protein; 73.6 16 0.00035 31.6 7.0 64 358-421 185-250 (269)
385 COG2909 MalT ATP-dependent tra 73.4 1.1E+02 0.0025 31.2 26.0 212 129-343 425-684 (894)
386 cd08819 CARD_MDA5_2 Caspase ac 73.2 11 0.00025 25.7 4.7 36 30-66 48-83 (88)
387 PF04190 DUF410: Protein of un 73.2 61 0.0013 28.0 16.0 159 30-211 2-170 (260)
388 KOG4507 Uncharacterized conser 72.9 26 0.00057 33.5 8.4 132 315-449 568-705 (886)
389 COG0790 FOG: TPR repeat, SEL1 72.8 66 0.0014 28.3 18.5 83 229-314 53-144 (292)
390 PF09477 Type_III_YscG: Bacter 72.5 14 0.00031 26.4 5.2 52 57-114 48-99 (116)
391 PRK13800 putative oxidoreducta 72.2 1.4E+02 0.003 31.6 27.7 255 140-414 625-880 (897)
392 PF04910 Tcf25: Transcriptiona 72.0 80 0.0017 28.9 12.0 55 393-447 110-166 (360)
393 KOG0551 Hsp90 co-chaperone CNS 71.9 15 0.00032 32.4 6.3 89 356-444 83-177 (390)
394 KOG4279 Serine/threonine prote 71.4 1.2E+02 0.0025 30.5 12.5 189 235-447 181-393 (1226)
395 PF07163 Pex26: Pex26 protein; 71.0 69 0.0015 27.7 10.1 85 257-341 88-181 (309)
396 COG4976 Predicted methyltransf 70.8 7.4 0.00016 32.2 4.1 58 364-421 5-64 (287)
397 COG4259 Uncharacterized protei 70.7 20 0.00043 25.1 5.5 38 407-444 58-96 (121)
398 PF11838 ERAP1_C: ERAP1-like C 70.4 80 0.0017 28.2 17.5 59 356-414 171-229 (324)
399 PF10345 Cohesin_load: Cohesin 69.9 1.2E+02 0.0027 30.2 30.0 122 23-145 105-251 (608)
400 PF00244 14-3-3: 14-3-3 protei 69.4 70 0.0015 27.2 12.2 160 289-449 7-198 (236)
401 PF14853 Fis1_TPR_C: Fis1 C-te 69.0 13 0.00029 22.6 4.0 29 422-450 3-31 (53)
402 KOG2471 TPR repeat-containing 68.9 1.1E+02 0.0023 29.0 12.7 108 326-433 248-382 (696)
403 PF10255 Paf67: RNA polymerase 68.8 28 0.00061 32.1 7.7 56 359-414 127-192 (404)
404 PHA02875 ankyrin repeat protei 68.6 1E+02 0.0022 28.8 15.5 68 5-72 17-88 (413)
405 PF04097 Nic96: Nup93/Nic96; 68.5 1.3E+02 0.0029 30.0 20.2 86 258-346 264-355 (613)
406 PF11846 DUF3366: Domain of un 68.4 16 0.00035 29.8 5.8 30 316-345 142-171 (193)
407 PF13929 mRNA_stabil: mRNA sta 67.6 85 0.0018 27.4 14.9 66 314-379 198-263 (292)
408 KOG3364 Membrane protein invol 67.5 26 0.00056 26.4 5.8 68 383-450 29-101 (149)
409 KOG4077 Cytochrome c oxidase, 65.5 35 0.00076 25.3 6.1 44 69-112 69-112 (149)
410 PF14863 Alkyl_sulf_dimr: Alky 65.2 32 0.00069 26.3 6.3 65 371-438 58-122 (141)
411 PF11663 Toxin_YhaV: Toxin wit 65.1 11 0.00023 28.3 3.6 32 60-93 106-137 (140)
412 PF04190 DUF410: Protein of un 65.0 93 0.002 26.9 18.9 82 250-346 88-169 (260)
413 PF13762 MNE1: Mitochondrial s 64.6 63 0.0014 24.9 8.5 92 7-98 26-129 (145)
414 KOG3824 Huntingtin interacting 64.2 17 0.00037 31.6 5.1 47 398-444 128-174 (472)
415 PRK13342 recombination factor 64.1 1.3E+02 0.0028 28.3 13.5 44 184-227 229-275 (413)
416 PF14689 SPOB_a: Sensor_kinase 63.3 20 0.00043 22.8 4.2 29 317-345 22-50 (62)
417 cd00280 TRFH Telomeric Repeat 63.1 47 0.001 26.6 6.9 26 395-421 120-145 (200)
418 PF11663 Toxin_YhaV: Toxin wit 62.7 11 0.00023 28.3 3.2 34 192-227 105-138 (140)
419 PF10366 Vps39_1: Vacuolar sor 62.6 56 0.0012 23.6 8.0 27 285-311 41-67 (108)
420 PF11848 DUF3368: Domain of un 62.2 31 0.00067 20.5 4.9 33 60-92 13-45 (48)
421 cd08819 CARD_MDA5_2 Caspase ac 61.6 50 0.0011 22.7 6.8 35 265-300 49-83 (88)
422 KOG2582 COP9 signalosome, subu 61.5 1.3E+02 0.0027 27.3 13.9 57 51-108 104-164 (422)
423 COG5191 Uncharacterized conser 61.2 20 0.00044 31.2 5.0 80 349-428 102-184 (435)
424 PF14689 SPOB_a: Sensor_kinase 60.5 38 0.00081 21.5 5.1 30 181-210 22-51 (62)
425 KOG4521 Nuclear pore complex, 59.9 2.4E+02 0.0053 30.1 13.9 120 321-442 986-1124(1480)
426 KOG0991 Replication factor C, 59.8 1.1E+02 0.0023 25.9 13.8 49 383-432 236-284 (333)
427 cd00280 TRFH Telomeric Repeat 59.4 54 0.0012 26.3 6.6 48 299-346 85-139 (200)
428 PF10366 Vps39_1: Vacuolar sor 58.7 67 0.0015 23.2 7.9 27 388-414 41-67 (108)
429 PF10255 Paf67: RNA polymerase 58.3 84 0.0018 29.2 8.7 120 321-446 125-267 (404)
430 PRK10564 maltose regulon perip 57.9 21 0.00046 31.1 4.7 37 51-87 259-295 (303)
431 COG2912 Uncharacterized conser 57.7 38 0.00082 29.1 6.1 56 392-447 187-242 (269)
432 PRK10564 maltose regulon perip 57.3 24 0.00053 30.7 4.9 39 183-221 258-296 (303)
433 COG4976 Predicted methyltransf 57.2 18 0.00039 30.1 3.9 54 327-382 4-57 (287)
434 PF11848 DUF3368: Domain of un 57.1 39 0.00085 20.0 5.2 33 294-326 13-45 (48)
435 PF11846 DUF3366: Domain of un 57.0 34 0.00074 27.9 5.8 35 383-417 141-175 (193)
436 PF07720 TPR_3: Tetratricopept 55.7 34 0.00073 18.8 4.3 17 392-408 7-23 (36)
437 COG5191 Uncharacterized conser 55.4 18 0.00039 31.5 3.8 64 384-447 105-169 (435)
438 COG0790 FOG: TPR repeat, SEL1 54.8 1.5E+02 0.0032 26.0 18.9 146 193-347 52-220 (292)
439 PF12968 DUF3856: Domain of Un 54.4 86 0.0019 23.2 8.5 59 387-445 56-125 (144)
440 PF08424 NRDE-2: NRDE-2, neces 54.1 1.7E+02 0.0036 26.4 16.8 133 281-416 17-184 (321)
441 KOG0292 Vesicle coat complex C 53.9 21 0.00045 36.0 4.4 46 365-413 654-699 (1202)
442 COG5108 RPO41 Mitochondrial DN 53.9 1.6E+02 0.0035 29.1 9.9 72 123-194 32-115 (1117)
443 COG0735 Fur Fe2+/Zn2+ uptake r 53.2 75 0.0016 24.5 6.7 62 71-133 8-69 (145)
444 PF11817 Foie-gras_1: Foie gra 53.0 43 0.00093 28.7 5.9 20 325-344 185-204 (247)
445 KOG0376 Serine-threonine phosp 52.9 27 0.00059 32.5 4.8 103 290-397 11-116 (476)
446 COG5108 RPO41 Mitochondrial DN 52.8 1.9E+02 0.0042 28.6 10.2 75 89-163 33-115 (1117)
447 KOG0403 Neoplastic transformat 52.5 2E+02 0.0044 26.9 20.5 74 321-397 512-585 (645)
448 PHA02875 ankyrin repeat protei 51.3 2.1E+02 0.0046 26.7 13.7 15 29-43 10-24 (413)
449 PF09454 Vps23_core: Vps23 cor 51.0 50 0.0011 21.2 4.5 33 82-114 6-38 (65)
450 KOG0889 Histone acetyltransfer 50.8 5.7E+02 0.012 31.6 23.9 38 389-426 2815-2852(3550)
451 COG0735 Fur Fe2+/Zn2+ uptake r 50.7 78 0.0017 24.4 6.4 63 36-98 7-69 (145)
452 KOG0530 Protein farnesyltransf 50.5 1.7E+02 0.0036 25.3 12.4 135 293-432 53-193 (318)
453 PF11838 ERAP1_C: ERAP1-like C 50.5 1.9E+02 0.004 25.9 17.1 58 154-211 172-230 (324)
454 PF12926 MOZART2: Mitotic-spin 50.2 32 0.00069 23.5 3.6 29 48-76 42-70 (88)
455 PRK11639 zinc uptake transcrip 50.2 67 0.0014 25.6 6.2 37 98-134 39-75 (169)
456 smart00777 Mad3_BUB1_I Mad3/BU 50.0 1.1E+02 0.0023 23.0 7.0 42 403-444 80-123 (125)
457 KOG1463 26S proteasome regulat 49.6 2E+02 0.0043 25.9 9.1 52 293-344 14-74 (411)
458 PF07575 Nucleopor_Nup85: Nup8 48.4 2.8E+02 0.0061 27.4 14.7 27 18-45 149-175 (566)
459 PF14669 Asp_Glu_race_2: Putat 48.4 1.5E+02 0.0032 24.2 13.0 55 223-277 138-206 (233)
460 PF12862 Apc5: Anaphase-promot 48.2 85 0.0018 21.9 5.9 23 324-346 47-69 (94)
461 PF11817 Foie-gras_1: Foie gra 47.7 58 0.0013 27.9 5.9 23 358-380 182-204 (247)
462 PF09454 Vps23_core: Vps23 cor 47.0 51 0.0011 21.2 4.1 52 46-98 5-56 (65)
463 KOG4814 Uncharacterized conser 46.7 71 0.0015 31.2 6.5 59 389-447 397-455 (872)
464 PF11768 DUF3312: Protein of u 46.7 2.8E+02 0.0061 26.9 10.7 56 22-77 412-472 (545)
465 TIGR02710 CRISPR-associated pr 46.0 2.5E+02 0.0053 26.0 11.4 53 291-343 138-196 (380)
466 cd07153 Fur_like Ferric uptake 45.5 52 0.0011 24.0 4.7 47 54-100 5-51 (116)
467 COG5159 RPN6 26S proteasome re 45.4 2.1E+02 0.0046 25.0 19.0 33 55-87 9-41 (421)
468 KOG2300 Uncharacterized conser 45.2 2.8E+02 0.0061 26.4 34.4 410 26-435 15-540 (629)
469 KOG2300 Uncharacterized conser 45.2 2.8E+02 0.0061 26.4 28.1 154 190-343 331-510 (629)
470 KOG0686 COP9 signalosome, subu 44.5 2.6E+02 0.0057 25.9 13.8 17 331-347 317-333 (466)
471 PF00244 14-3-3: 14-3-3 protei 44.3 2E+02 0.0043 24.5 11.1 58 188-245 7-65 (236)
472 KOG1586 Protein required for f 43.8 2E+02 0.0044 24.4 19.3 18 27-44 23-40 (288)
473 KOG1498 26S proteasome regulat 43.8 2.6E+02 0.0057 25.7 15.4 92 359-450 136-242 (439)
474 cd08326 CARD_CASP9 Caspase act 42.9 62 0.0013 22.1 4.3 34 31-64 43-76 (84)
475 KOG1308 Hsp70-interacting prot 42.2 39 0.00084 30.1 3.9 86 366-451 126-213 (377)
476 PF13934 ELYS: Nuclear pore co 42.0 2.1E+02 0.0046 24.1 14.1 166 34-204 26-198 (226)
477 PF01475 FUR: Ferric uptake re 41.6 50 0.0011 24.3 4.1 45 54-98 12-56 (120)
478 PF11768 DUF3312: Protein of u 41.3 3.4E+02 0.0074 26.3 10.2 61 286-347 411-473 (545)
479 KOG3807 Predicted membrane pro 41.2 2.6E+02 0.0057 25.0 12.7 63 359-421 280-347 (556)
480 KOG0292 Vesicle coat complex C 41.1 1.4E+02 0.003 30.6 7.7 129 26-177 651-779 (1202)
481 PF08424 NRDE-2: NRDE-2, neces 41.1 2.7E+02 0.0058 25.0 15.1 59 102-161 49-109 (321)
482 KOG2063 Vacuolar assembly/sort 40.9 4.5E+02 0.0097 27.5 17.3 245 21-275 507-776 (877)
483 KOG1114 Tripeptidyl peptidase 40.8 4.5E+02 0.0099 27.6 14.0 54 317-370 1230-1283(1304)
484 PF09670 Cas_Cas02710: CRISPR- 40.0 3.1E+02 0.0067 25.4 11.8 55 191-246 140-198 (379)
485 KOG2422 Uncharacterized conser 39.9 3.7E+02 0.008 26.3 12.6 168 18-185 284-501 (665)
486 PF06957 COPI_C: Coatomer (COP 39.9 3.3E+02 0.007 25.6 11.9 41 210-250 291-333 (422)
487 PRK13342 recombination factor 39.7 3.3E+02 0.0071 25.6 18.2 119 199-332 154-279 (413)
488 PF10475 DUF2450: Protein of u 39.1 2.7E+02 0.0059 24.6 9.1 114 257-377 103-220 (291)
489 PF04910 Tcf25: Transcriptiona 39.0 3.1E+02 0.0068 25.2 17.9 57 189-245 110-167 (360)
490 KOG0545 Aryl-hydrocarbon recep 38.0 2.6E+02 0.0056 24.0 10.3 69 356-424 232-302 (329)
491 PF12968 DUF3856: Domain of Un 37.7 1.5E+02 0.0032 22.0 5.5 73 388-460 9-100 (144)
492 COG4941 Predicted RNA polymera 37.6 3.1E+02 0.0067 24.7 12.5 118 299-421 272-400 (415)
493 PF15469 Sec5: Exocyst complex 37.5 2.2E+02 0.0047 22.9 11.0 24 323-346 91-114 (182)
494 KOG0686 COP9 signalosome, subu 37.4 3.4E+02 0.0074 25.2 14.3 58 153-210 152-215 (466)
495 PF10475 DUF2450: Protein of u 36.9 3E+02 0.0065 24.3 9.7 50 159-210 106-155 (291)
496 PF12583 TPPII_N: Tripeptidyl 36.8 1.6E+02 0.0036 22.1 5.7 40 395-434 85-124 (139)
497 KOG0403 Neoplastic transformat 36.7 3.7E+02 0.008 25.4 25.9 62 389-450 512-573 (645)
498 PF07575 Nucleopor_Nup85: Nup8 36.4 1.4E+02 0.0029 29.6 7.2 29 195-223 508-536 (566)
499 PRK09462 fur ferric uptake reg 36.2 2E+02 0.0044 22.2 7.4 61 207-268 7-68 (148)
500 PRK14700 recombination factor 36.2 3.1E+02 0.0067 24.3 9.6 68 181-248 122-197 (300)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.8e-72 Score=559.52 Aligned_cols=460 Identities=35% Similarity=0.618 Sum_probs=418.7
Q ss_pred ccchhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 012360 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 81 (465)
|++++..|.+.|+.||+.++|.|+..|++.|++++|.++|++|+.+|..+||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 56788888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHH
Q 012360 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY 161 (465)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 161 (465)
||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li~~~ 364 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGY 364 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888888888888888887774 45555555555555
Q ss_pred HhcCC----------------------------------------------------------------------hHHHH
Q 012360 162 IDMEL----------------------------------------------------------------------VDLAR 171 (465)
Q Consensus 162 ~~~~~----------------------------------------------------------------------~~~a~ 171 (465)
++.|+ +++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 54444 44444
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCC
Q 012360 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251 (465)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 251 (465)
++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 445555555556666666666677777777777777764 5889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 331 (465)
..+++.++.+|++.|++++|.++|+.+ .+|..+|++++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 999999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHH
Q 012360 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (465)
|++++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++|..+|+..+|++|+.+|..+|+.+.++...++
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999667999999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCeeeecCC
Q 012360 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464 (465)
Q Consensus 412 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (465)
+.++.|+++..|..|.+.|...|+|++|.++.+.|++.|++++||+|||++++
T Consensus 683 l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 683 IFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred HHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 99999999999999999999999999999999999999999999999999976
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.4e-72 Score=545.77 Aligned_cols=459 Identities=24% Similarity=0.358 Sum_probs=445.3
Q ss_pred ccchhHHHHHhc-cCCcchhhhHHHHHHHccCChHHHHHHhccCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 012360 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMP----FRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76 (465)
Q Consensus 2 ~~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 76 (465)
|.++|..|...+ +.||..+|+.++.++++.++++.|.+++..|. .||..+||.++.+|++.|++++|.++|++|.
T Consensus 106 Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~ 185 (697)
T PLN03081 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185 (697)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC
Confidence 567899998765 78999999999999999999999999999886 6799999999999999999999999999996
Q ss_pred HcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh---CCCCCchh
Q 012360 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIVS 153 (465)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~ 153 (465)
.||..+|+.++.+|++.|++++|.++|++|.+.|..|+..+|+.++.++++.|+.+.+.+++..+ +..||..+
T Consensus 186 ----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~ 261 (697)
T PLN03081 186 ----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261 (697)
T ss_pred ----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcccee
Confidence 48999999999999999999999999999999999999999999999999999999999998887 88999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhh
Q 012360 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233 (465)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 233 (465)
|+.++.+|++.|++++|.++|+.|.++|..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012360 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313 (465)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 313 (465)
+.|.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|++|.++|..+|++||.+|++.|+.++|.++|++|.+.|
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHH
Q 012360 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393 (465)
Q Consensus 314 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 393 (465)
+.||..||+.++.+|++.|+.++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.++++++...|+..+|+.++
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll 501 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALL 501 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999998777999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCeeeecCC
Q 012360 394 SACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (465)
.+|...|+++.|..+++++.+.+|++...|..|+++|.+.|++++|.+++++|++.|+.+.||+||+++++
T Consensus 502 ~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~ 572 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK 572 (697)
T ss_pred HHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC
Confidence 99999999999999999999999999989999999999999999999999999999999999999999875
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-65 Score=514.26 Aligned_cols=451 Identities=28% Similarity=0.442 Sum_probs=406.8
Q ss_pred ccchhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 012360 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 81 (465)
|.+++..+.+.|..+++.++|.++..|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.
T Consensus 105 a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~ 184 (857)
T PLN03077 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184 (857)
T ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 45678888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhC---------------
Q 012360 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG--------------- 146 (465)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------- 146 (465)
||..||+.++++|+..+++..+.+++..+.+.|+.|+..+++.++.+|++.|+++.|.++|++|.
T Consensus 185 Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~ 264 (857)
T PLN03077 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF 264 (857)
T ss_pred CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 99999988888888777777777777777777777766666666666666666666666665552
Q ss_pred ------------------------------------------------------CCCCchhHHHHHHHHHhcCChHHHHH
Q 012360 147 ------------------------------------------------------SRRNIVSLNILINGYIDMELVDLARE 172 (465)
Q Consensus 147 ------------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~ 172 (465)
..||..+|+.++.+|++.|++++|.+
T Consensus 265 ~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHH
Confidence 23445555556666667788888888
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCCh
Q 012360 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252 (465)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 252 (465)
+|++|..||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+.
T Consensus 345 vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred HHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 012360 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332 (465)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 332 (465)
.+++.++.+|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999986 58999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 012360 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412 (465)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (465)
+.+.+.+++..+.+. |+.++..+++.|+++|.++|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|+++|++|
T Consensus 504 ~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 504 ALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999976 99999999999999999999999999999998 789999999999999999999999999999
Q ss_pred HHhC-CCCchhHHHHHHHHhhcCChHHHHHHHHHHH-HhcCCCCCC
Q 012360 413 MKLG-NQSHEAYVLLSNFYALEGHWTEVAEARRNMK-ELQTRKKPG 456 (465)
Q Consensus 413 ~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~ 456 (465)
.+.+ .++..+|..++.+|.+.|++++|.++|+.|. +.|+.|+..
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 9977 3445559999999999999999999999998 789988753
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.6e-65 Score=501.22 Aligned_cols=452 Identities=16% Similarity=0.212 Sum_probs=302.4
Q ss_pred ccchhHHHHHhcc-CCcchhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 012360 2 GKGLHAHVTKTAL-DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGI 80 (465)
Q Consensus 2 ~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 80 (465)
|.++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..||..+|+.++.+|++.|+++.|.++|+.|.+.|+
T Consensus 389 Al~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl 468 (1060)
T PLN03218 389 CIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL 468 (1060)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC
Confidence 5678888888884 556666666677777777777777777777666777777777777777777777777777777676
Q ss_pred CCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh---CCCCCchhHHHH
Q 012360 81 VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNIL 157 (465)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l 157 (465)
.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++| ++.||..+|+.+
T Consensus 469 ~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsL 548 (1060)
T PLN03218 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 77777777777777777777777777777776666677777777777777777777777777666 566677777777
Q ss_pred HHHHHhcCChHHHHHHHHHhh------cCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch
Q 012360 158 INGYIDMELVDLAREVFDEIV------DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231 (465)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 231 (465)
|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|
T Consensus 549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G 628 (1060)
T PLN03218 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence 777777777777777776663 35666677777777777777777777777766666666666777777776667
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhhHHHHHHHHHHcCChHHHHHHHH
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD----CKDVVTWTTMIEGLANYGLGNEALRVFY 307 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 307 (465)
++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. .||..+|+.++.+|++.|++++|.++|+
T Consensus 629 ~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 777777777776666666666666666666666666666666666654 3566666666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC---CC
Q 012360 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA---ED 384 (465)
Q Consensus 308 ~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 384 (465)
+|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... |+.||..+|+.++.+|++.|++++|.++++.|.. .|
T Consensus 709 eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 6666666666666666666666666666666666666644 6666666666666666666666666666666643 44
Q ss_pred ccchHHHHHHHHHh----c-------------------CChHHHHHHHHHHHHhC-------------------------
Q 012360 385 KFISYKALLSACIT----Y-------------------SEFDLGKKVANNMMKLG------------------------- 416 (465)
Q Consensus 385 ~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~------------------------- 416 (465)
|..+|+.++..|.+ . +..+.|..+|++|++.+
T Consensus 788 d~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~ 867 (1060)
T PLN03218 788 NLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRN 867 (1060)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHH
Confidence 56666666544321 1 11245666666666555
Q ss_pred -----------CCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCC
Q 012360 417 -----------NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPG 456 (465)
Q Consensus 417 -----------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 456 (465)
+++..+|+.++.++.+ ..++|..++++|...|+.|+..
T Consensus 868 ~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 868 RLIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcc
Confidence 2223345555555522 1246888888888888877764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-64 Score=496.62 Aligned_cols=412 Identities=16% Similarity=0.194 Sum_probs=329.2
Q ss_pred ccchhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 012360 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP----FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIF 77 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 77 (465)
|.++|..|++.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888888888876 56778888888888888888888888888888
Q ss_pred cCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHH--hCCccchhhHHHHHHHHHhCCChHHHHHHHHhh---CCCCCch
Q 012360 78 EGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYMLNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIV 152 (465)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~ 152 (465)
.|+.||..+|+.+|.+|++.|++++|.+++++|.. .|+.||..+|+.++.+|++.|++++|.++|+.| ++.|+..
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 88888888888888888888888888888888865 467788888888888888888888888888888 6677888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhh----cCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 012360 153 SLNILINGYIDMELVDLAREVFDEIV----DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS 228 (465)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 228 (465)
+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888888888888874 46778888888888888888888888888888888888888888888888
Q ss_pred cchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhhHHHHHHHHHHcCChHHHHH
Q 012360 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD----CKDVVTWTTMIEGLANYGLGNEALR 304 (465)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~ 304 (465)
+.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888888888888888888888888888888888888887664 4778888888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHhhcCCCCCCChhhHHHHH
Q 012360 305 VFYQMERKGIKPNEATFVSVLAACRH----S-------------------GLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361 (465)
Q Consensus 305 ~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 361 (465)
++.+|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+. |+.||..+|+.++
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVL 854 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHH
Confidence 88888888888888888887765432 1 1235678888888866 8888888888888
Q ss_pred HHHHhcCCHHHHHHHHHhCCC---CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 362 DLLSRAGLLYQAEEFIKIMPA---EDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.+++..+....+..+++.+.. .++..+|++++.++.+. .++|..++++|.+.|
T Consensus 855 ~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 855 GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 777777888888888887754 34677889999887432 368999999999988
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.2e-61 Score=469.11 Aligned_cols=453 Identities=21% Similarity=0.317 Sum_probs=412.1
Q ss_pred ccchhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 012360 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 81 (465)
|++++..|++.|+.||+.+|+.++..|++.|++++|.++|++|+.||..+||.++.+|++.|++++|+++|++|.+.|+.
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 221 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHH
Q 012360 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY 161 (465)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 161 (465)
||..+|..++.+|+..|..+.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|++|. ++|..+|+.++.+|
T Consensus 222 p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~~~vt~n~li~~y 300 (697)
T PLN03081 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGY 300 (697)
T ss_pred CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-CCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999996 68999999999999
Q ss_pred HhcCChHHHHHHHHHh----hcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHH
Q 012360 162 IDMELVDLAREVFDEI----VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237 (465)
Q Consensus 162 ~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (465)
++.|+.++|.++|++| ..||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|+++.|.
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 9999999999999999 468999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH-C
Q 012360 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD----CKDVVTWTTMIEGLANYGLGNEALRVFYQMER-K 312 (465)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~ 312 (465)
++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|. .||..+|+.++.+|.+.|+.++|.++|+.|.+ .
T Consensus 381 ~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 381 NVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 99999964 788999999999999999999999999876 58999999999999999999999999999986 6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHH
Q 012360 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYK 390 (465)
Q Consensus 313 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~ 390 (465)
|+.|+..+|+.++.+|++.|++++|.++++++ ++.|+..+|+.|+.+|...|+++.|..+++++.. .| +..+|.
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 99999999999999999999999999999876 4579999999999999999999999999998755 44 577999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCC--CCchhHHHHHH---HHh--------hcCChHHHHHHHHHHHHhcCCCCCCC
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGN--QSHEAYVLLSN---FYA--------LEGHWTEVAEARRNMKELQTRKKPGN 457 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~---~~~--------~~g~~~~a~~~~~~~~~~~~~~~~~~ 457 (465)
.++..|++.|++++|.+++++|.+.+- .+...|..+.. .+. ...-++...++.++|++.|..|+...
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 999999999999999999999999872 22221211100 000 01123455677888889999888766
Q ss_pred eeeecC
Q 012360 458 SIIDLK 463 (465)
Q Consensus 458 ~~~~~~ 463 (465)
...+++
T Consensus 613 ~~~~~~ 618 (697)
T PLN03081 613 LLPDVD 618 (697)
T ss_pred hhcccc
Confidence 555443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.3e-31 Score=272.00 Aligned_cols=425 Identities=11% Similarity=0.045 Sum_probs=288.2
Q ss_pred CCcchhhhHHHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 012360 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILF 91 (465)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 91 (465)
++++.++..+...+...|++++|...|+++. +.+...+..+...+...|++++|.+.|+++...+ +.+..++..+.
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456666666667777777777777766653 2244455666666666777777777777766543 33455666666
Q ss_pred HHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHH
Q 012360 92 SACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDL 169 (465)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 169 (465)
..+.+.|+.++|...++.+.+.+ +.+...+..++..+...|++++|..+++.+ ..+.+..+|..+...+...|++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 66666777777777777766654 344555666677777777777777777776 233455667777777777777777
Q ss_pred HHHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc
Q 012360 170 AREVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 170 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (465)
|...|+.+.. .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++.|..+++.+.+.
T Consensus 620 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777776633 245566667777777777777777777776642 234566666777777777777777777777665
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012360 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324 (465)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 324 (465)
. +.+...+..+...+...|++++|.+.|+.+. .|+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+
T Consensus 699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l 776 (899)
T TIGR02917 699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTAL 776 (899)
T ss_pred C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4 4455666667777777777777777777654 2444566667777777777777777777776652 3345667777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCCh
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEF 402 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 402 (465)
...|...|++++|...|+++.+. .+++...+..+...+...|+ ++|..+++++.. +.++.++..++..+...|++
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 77777777777777777777753 34566677777777777777 667777776543 23555666777777777888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 403 DLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 403 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
++|.++++++++.+|.++.++..++.++.+.|++++|.+++++|.
T Consensus 854 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 854 DRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888888888777777777778888888888888888777764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4e-30 Score=264.02 Aligned_cols=423 Identities=13% Similarity=0.060 Sum_probs=313.1
Q ss_pred hhhHHHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc
Q 012360 20 VGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96 (465)
Q Consensus 20 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 96 (465)
....++..+.+.|++++|..+++.+. +++..+|..+...+...|++++|...|+++.+.. +.+...+..+...+..
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQ 511 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHH
Confidence 34445555556666666666665554 2345566667777777777777777777766542 2234455556666667
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVF 174 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 174 (465)
.|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++ ..+.+...+..++..+...|++++|.+++
T Consensus 512 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777777776654 345566667777777777777777777776 22334556667777777778888888777
Q ss_pred HHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCC
Q 012360 175 DEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251 (465)
Q Consensus 175 ~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 251 (465)
+.+.. .+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 668 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDN 668 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC
Confidence 77743 356677777888888888888888888877653 2345566677777777888888888888877654 445
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 328 (465)
..++..+...+...|++++|..+++.+.. .+...+..+...+...|++++|...|+++... .|+..++..+..++
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHH
Confidence 66777788888888888888888877653 35567777788888888888888888888876 45556777788888
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHH
Q 012360 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 406 (465)
.+.|++++|.+.++++.+ ..+.+...+..+...|...|++++|.+.|+++.. ++++.+++.++..+...|+ ++|+
T Consensus 747 ~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~ 823 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRAL 823 (899)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHH
Confidence 888999999998888886 3456777888888899999999999999988754 3467778888999999998 8899
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 407 KVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
..++++.+..|+++..+..++.++...|++++|.++++++.+.+.
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 824 EYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999899999999999999999999999887654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.7e-22 Score=208.48 Aligned_cols=416 Identities=12% Similarity=0.015 Sum_probs=326.4
Q ss_pred HHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh---hHH---------
Q 012360 24 LIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKI---TLV--------- 88 (465)
Q Consensus 24 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~--------- 88 (465)
....+...|++++|+..|++.. +.+...+..+..++.+.|++++|+..|++..+.. |+.. .+.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHH
Confidence 3456778899999999999876 3367788999999999999999999999998753 3321 111
Q ss_pred ---HHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCC-chhHHHHHHHHHh
Q 012360 89 ---ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRN-IVSLNILINGYID 163 (465)
Q Consensus 89 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~ 163 (465)
.....+.+.|++++|...++++.+.. +.+...+..+..++...|++++|++.|++. ...|+ ..++..+...+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 22345678899999999999999875 445667778899999999999999999998 44454 455666666664
Q ss_pred cCChHHHHHHHHHhhcCC------------hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch
Q 012360 164 MELVDLAREVFDEIVDKD------------IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231 (465)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 231 (465)
.++.++|..+++.+.... ...+..+...+...|++++|++.|++.++... -+...+..+...+.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 567899999988764321 22455667788899999999999999998532 24566777888899999
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----h---------hhHHHHHHHHHHcCC
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD----V---------VTWTTMIEGLANYGL 298 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~ 298 (465)
++++|...++++.+.. +.+...+..+...+...++.++|...++.+.... . ..+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999998754 3345555556667788999999999999876421 1 112345667888999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 012360 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378 (465)
Q Consensus 299 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 378 (465)
.++|..+++. .+++...+..+...+.+.|++++|+..|+++.+. .+.+...+..++..|...|++++|.+.++
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999872 2445567778889999999999999999999963 34568888999999999999999999999
Q ss_pred hCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc------hhHHHHHHHHhhcCChHHHHHHHHHHH-Hh
Q 012360 379 IMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH------EAYVLLSNFYALEGHWTEVAEARRNMK-EL 449 (465)
Q Consensus 379 ~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~ 449 (465)
.+.. .| +...+..+..++...|++++|.++++++++..|+++ ..+..++..+...|++++|...+++.. ..
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 8765 33 556677788899999999999999999999876543 356777999999999999999999775 34
Q ss_pred cCC
Q 012360 450 QTR 452 (465)
Q Consensus 450 ~~~ 452 (465)
++.
T Consensus 742 ~~~ 744 (1157)
T PRK11447 742 GIT 744 (1157)
T ss_pred CCC
Confidence 443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.1e-21 Score=202.51 Aligned_cols=434 Identities=12% Similarity=0.032 Sum_probs=271.1
Q ss_pred chhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCC--CCc-ccH----------------HHHHHHHHhcCC
Q 012360 4 GLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDV-GSW----------------NTLMSIYNDFSD 64 (465)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~----------------~~l~~~~~~~~~ 64 (465)
+.++.+... -+.|+.++..++..+.+.|+.++|.+.++++.+ |+. ..+ ..+...+.+.|+
T Consensus 49 ~~l~kl~~~-~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~ 127 (1157)
T PRK11447 49 QSLYRLELI-DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGR 127 (1157)
T ss_pred HHHHHHHcc-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 344444433 234677788888888888888888888887762 222 211 223346777888
Q ss_pred hhHHHHHHHHHHHcCCCCchh-hHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHH
Q 012360 65 SGEVLILFKQLIFEGIVADKI-TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143 (465)
Q Consensus 65 ~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 143 (465)
+++|+..|+.+...+ +|+.. ............|+.++|.+.++.+.+.. +.+...+..+...+...|+.++|+..++
T Consensus 128 ~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~ 205 (1157)
T PRK11447 128 TEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLE 205 (1157)
T ss_pred HHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888888887643 33322 11111122234578888888888888764 4455667778888888888888888887
Q ss_pred hhCCCCC-----------------------------------chhH---------------------HHHHHHHHhcCCh
Q 012360 144 EMGSRRN-----------------------------------IVSL---------------------NILINGYIDMELV 167 (465)
Q Consensus 144 ~~~~~~~-----------------------------------~~~~---------------------~~l~~~~~~~~~~ 167 (465)
++...|. .... ......+...|++
T Consensus 206 ~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~ 285 (1157)
T PRK11447 206 QMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQG 285 (1157)
T ss_pred HHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCH
Confidence 7611110 0000 0112344567888
Q ss_pred HHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHH------------HHHHHHhccch
Q 012360 168 DLAREVFDEIVD--K-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD-EEVM------------VSVLSACSSLS 231 (465)
Q Consensus 168 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~------------~~ll~~~~~~~ 231 (465)
++|+..|++... | +...+..+...+.+.|++++|+..|++..+...... ...+ ......+.+.|
T Consensus 286 ~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g 365 (1157)
T PRK11447 286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN 365 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC
Confidence 888888887744 3 667778888888888888888888888776432211 1111 11233456778
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhhHH---------------------
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--K-DVVTWT--------------------- 287 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~--------------------- 287 (465)
++++|...++++.+.. +.+...+..+..++...|++++|++.|+++.+ | +...+.
T Consensus 366 ~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 366 NLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 8888888888887764 34556667777888888888888888876552 2 222222
Q ss_pred ---------------------HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 288 ---------------------TMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 288 ---------------------~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
.+...+...|++++|...+++..+. .|+ ...+..+...+.+.|++++|...++++.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1233445678888888888888876 454 5567778888888999999999888887
Q ss_pred cCCCCCCChhhHHHH--------------------------------------------HHHHHhcCCHHHHHHHHHhCC
Q 012360 346 GVYRVQPTIEHFVCL--------------------------------------------VDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 346 ~~~~~~~~~~~~~~l--------------------------------------------~~~~~~~g~~~~A~~~~~~~~ 381 (465)
+.. +.+...+..+ ...+...|+.++|.++++.-
T Consensus 523 ~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~- 599 (1157)
T PRK11447 523 QQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ- 599 (1157)
T ss_pred HcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-
Confidence 431 2222222222 22233344444444444411
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 382 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
++++..+..+...+.+.|++++|+..|+++++..|+++..+..++.++...|++++|++.++...
T Consensus 600 -p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 600 -PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 12334455566666666777777777777777667666666666666666666666666666554
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=2.9e-22 Score=177.32 Aligned_cols=378 Identities=13% Similarity=0.097 Sum_probs=314.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchh-hHHHHHHH
Q 012360 50 GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN-MENALLLM 128 (465)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 128 (465)
.+|+.+...+-..|++++|+.+|+.+.+.. +-....|..+..++...|+.+.|.+.|.+.++.+ |+.. ..+.+...
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnL 193 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHH
Confidence 578888999999999999999999998853 2245688889999999999999999999988764 4433 33445556
Q ss_pred HHhCCChHHHHHHHHhh-CCCC-CchhHHHHHHHHHhcCChHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChhHHHH
Q 012360 129 YAKCKEMDEALRLFDEM-GSRR-NIVSLNILINGYIDMELVDLAREVFDEIVDKD---IVLWRSMMHGCVKAKQPEEALE 203 (465)
Q Consensus 129 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~ 203 (465)
+-..|+.++|...+.+. ...| -.++|+.|...+-..|+...|+..|++.++-| ...|-.|...|...+.++.|..
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 66789999999988776 4455 45689999999999999999999999986543 3678889999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--
Q 012360 204 LFKKMIDEGVTPD-EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-- 280 (465)
Q Consensus 204 ~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 280 (465)
.|.+.... .|+ ...+..+...|..+|+.+.|+..|++.++.. +.-+..|+.+..++...|++.+|.+.|.+...
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99988774 454 4566777777889999999999999998864 33467899999999999999999999988653
Q ss_pred C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhhH
Q 012360 281 K-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHF 357 (465)
Q Consensus 281 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 357 (465)
| ...+.+.|...|...|.+++|..+|....+- .|. ....+.|...|-++|++++|+..|+++. .+.|+ ...+
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~ 425 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADAL 425 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHH
Confidence 3 4568888999999999999999999988765 665 4678899999999999999999999998 45675 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCC
Q 012360 358 VCLVDLLSRAGLLYQAEEFIKIMP-AED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435 (465)
Q Consensus 358 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 435 (465)
+.+...|...|+.+.|...+.+.. .+| -....+.|...|...|+..+|+..|+.++++.|+.+.+|-.++.++.-..+
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhc
Confidence 999999999999999999888754 355 445788899999999999999999999999999999999999888776666
Q ss_pred hHH
Q 012360 436 WTE 438 (465)
Q Consensus 436 ~~~ 438 (465)
|.+
T Consensus 506 w~D 508 (966)
T KOG4626|consen 506 WTD 508 (966)
T ss_pred ccc
Confidence 655
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.2e-21 Score=190.02 Aligned_cols=250 Identities=13% Similarity=0.037 Sum_probs=202.3
Q ss_pred cCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 012360 195 AKQPEEALELFKKMIDEG-VTP-DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272 (465)
Q Consensus 195 ~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 272 (465)
.+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++...+.. +.....|..+..++...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 468899999999998764 233 34566777777888999999999999998864 334667888899999999999999
Q ss_pred HHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 012360 273 VTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348 (465)
Q Consensus 273 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 348 (465)
..|++.. +.+...|..+...+...|++++|...|++..+. .| +...+..+..++.+.|++++|+..|++...
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 9998765 335778889999999999999999999999887 45 456777888899999999999999999985
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc-cch-------HHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 012360 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK-FIS-------YKALLSACITYSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 349 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 419 (465)
..+.+...++.+..++...|++++|.+.|++... .|+ ... ++..+..+...|++++|+++++++++.+|++
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3345678888999999999999999999988643 231 111 1222223334699999999999999999999
Q ss_pred chhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 420 HEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 420 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
...+..++.++.+.|++++|..++++..+.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888999999999999999999999987654
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-22 Score=180.03 Aligned_cols=417 Identities=13% Similarity=0.076 Sum_probs=336.1
Q ss_pred HHHHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhh
Q 012360 24 LIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKL 100 (465)
Q Consensus 24 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (465)
|.+-.-+.|++++|++.-..+-.. +....-.+-.++.+..+.+....--....+.. +.-..+|..+.+.+-..|++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchH
Confidence 344444557777776655444322 22223333345566666666555444444432 33456899999999999999
Q ss_pred hhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHH-HHHHHHHhcCChHHHHHHHHHhh
Q 012360 101 HYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLN-ILINGYIDMELVDLAREVFDEIV 178 (465)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~ 178 (465)
+.|+..++.+++.. +..+..|..+..++...|+.+.|...|.+. ...|+..... .+...+...|++++|...+-+.+
T Consensus 133 ~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi 211 (966)
T KOG4626|consen 133 QDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAI 211 (966)
T ss_pred HHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHH
Confidence 99999999999875 456778999999999999999999998776 7788766544 45556667899999999998775
Q ss_pred cC---ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhH
Q 012360 179 DK---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD-EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254 (465)
Q Consensus 179 ~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 254 (465)
+. -...|..|...+..+|+...|+..|++..+. .|+ ...|..|-..|...+.++.|...|.+..... +.....
T Consensus 212 ~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a 288 (966)
T KOG4626|consen 212 ETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVA 288 (966)
T ss_pred hhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhh
Confidence 53 2467999999999999999999999999884 454 4577788888888999999999998887753 345677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 012360 255 KTALIDMYSKCGSLEEALVTFYKTDC--KD-VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRH 330 (465)
Q Consensus 255 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~ 330 (465)
+..+...|...|.++.|+..|++..+ |+ +..|+.|..++-..|++.+|.+.+.+.... .|+ ....+.|...+..
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYRE 366 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHH
Confidence 88899999999999999999998764 43 468999999999999999999999998876 555 5688899999999
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKV 408 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~ 408 (465)
.|.+++|..+|....+. .+.-...++.|...|.+.|++++|...+++... +| -...|+.++..|...|+.+.|++.
T Consensus 367 ~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred hccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 99999999999999853 233467789999999999999999999998754 55 456899999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 409 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+.+++..+|.-..+++.|+..|..+|+..+|+.-++...+.
T Consensus 445 y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 445 YTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999977654
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=6.6e-22 Score=182.55 Aligned_cols=301 Identities=15% Similarity=0.072 Sum_probs=200.9
Q ss_pred HHHHHhCCChHHHHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHHHHHHHHHhhcCC-------hHHHHHHHHHHHHcC
Q 012360 126 LLMYAKCKEMDEALRLFDEM-GSRRN-IVSLNILINGYIDMELVDLAREVFDEIVDKD-------IVLWRSMMHGCVKAK 196 (465)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~g 196 (465)
...+...|++++|...|+++ ...|+ ..++..+...+...|++++|..+++.+.... ...+..++..|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33455667777777777777 33443 3456666666667777777777666653321 134556666666666
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 012360 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276 (465)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 276 (465)
++++|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 6666666666666542 23445566666666666666666666666655432111000
Q ss_pred cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhh
Q 012360 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356 (465)
Q Consensus 277 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (465)
....+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++... .......+
T Consensus 179 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~ 251 (389)
T PRK11788 179 -----IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEV 251 (389)
T ss_pred -----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHH
Confidence 01123445666777788888888888877652 223456677778888888888888888888753 11112456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh---
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL--- 432 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 432 (465)
+..++.+|...|++++|...++++.. .|+...+..++..+.+.|++++|..+++++++..|++.. +..+...+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~ 330 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccC
Confidence 67788888888888888888887654 566666788888888899999999999999988888775 5555555443
Q ss_pred cCChHHHHHHHHHHHHhcCCCCCCC
Q 012360 433 EGHWTEVAEARRNMKELQTRKKPGN 457 (465)
Q Consensus 433 ~g~~~~a~~~~~~~~~~~~~~~~~~ 457 (465)
.|+.+++..++++|.+.++.|+|.+
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCCE
Confidence 4588899999999998888888864
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=4.1e-19 Score=175.76 Aligned_cols=432 Identities=10% Similarity=-0.029 Sum_probs=293.8
Q ss_pred ccchhHHHHHhccCCcchhhhHHHHH--------HHccCChHHHHHHhccCCCCC--cccHHHH-HHHHHhcCChhHHHH
Q 012360 2 GKGLHAHVTKTALDSDIYVGNSLIHF--------YGRMALFTDARVLFDKMPFRD--VGSWNTL-MSIYNDFSDSGEVLI 70 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~--~~~~~~l-~~~~~~~~~~~~a~~ 70 (465)
|-.+++++.... +-+..++..+... |.+.+...+++. .....|+ ....... ...|.+.|++++|++
T Consensus 127 A~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 127 SVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 345667777654 4456666666665 777766666666 3333333 3334444 889999999999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHhcc-hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh----
Q 012360 71 LFKQLIFEGIVADKITLVILFSACAR-LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM---- 145 (465)
Q Consensus 71 ~~~~m~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 145 (465)
++.++.+.+. .+......+..++.. .++ +.+..++.. ..+.+..+...++..|.+.|+.++|.++++++
T Consensus 204 lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 9999998763 334445566666666 356 666666442 33467778889999999999999999999988
Q ss_pred CCCCCchhHHHH------------------------------HHHHH---------------------------------
Q 012360 146 GSRRNIVSLNIL------------------------------INGYI--------------------------------- 162 (465)
Q Consensus 146 ~~~~~~~~~~~l------------------------------~~~~~--------------------------------- 162 (465)
...|...+|.-+ +..+.
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 222333333222 12222
Q ss_pred ------------------------------hcCChHHHHHHHHHhhc-C-----ChHHHHHHHHHHHHcCC---hhHHHH
Q 012360 163 ------------------------------DMELVDLAREVFDEIVD-K-----DIVLWRSMMHGCVKAKQ---PEEALE 203 (465)
Q Consensus 163 ------------------------------~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~---~~~a~~ 203 (465)
+.|+.++|.++|+.... + +....+-++..|.+.+. ..++..
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 33444555555544422 1 11223344444444443 222211
Q ss_pred H----------------------HHHHHHc-CC-CC--CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHH
Q 012360 204 L----------------------FKKMIDE-GV-TP--DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257 (465)
Q Consensus 204 ~----------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (465)
+ ++..... +. ++ +...+..+..++.. ++.++|...+....... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 1 1111110 11 12 34444444444444 67777888777766653 45444444
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 012360 258 LIDMYSKCGSLEEALVTFYKTDC--KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE-ATFVSVLAACRHSGLI 334 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~ 334 (465)
+...+...|++++|...|+++.. ++...+..+..++.+.|++++|...+++..+.. |+. ..+..+.......|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCH
Confidence 55556789999999999987653 444556677788899999999999999998763 443 3344444555567999
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHH
Q 012360 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNM 412 (465)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (465)
++|...+++..+ ..|+...+..+..++.+.|++++|...+++... .| +...+..+..++...|++++|+..++++
T Consensus 593 ~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 593 ELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999984 357788899999999999999999999998755 44 6677888999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 413 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
++..|+++.++..++.++...|++++|+..+++..+..
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999886543
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=2.6e-19 Score=176.91 Aligned_cols=400 Identities=10% Similarity=-0.009 Sum_probs=239.8
Q ss_pred CCcchhhhHHHHHHHccCChHHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 012360 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPF---RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILF 91 (465)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 91 (465)
+.++....-.+......|+.++|+++|+.... .+...+..+...+...|++++|..+|++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 44555666667777788888888888887663 233357788888888888888888888877652 23445566677
Q ss_pred HHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHH
Q 012360 92 SACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRN-IVSLNILINGYIDMELVDL 169 (465)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ 169 (465)
..+...|++++|...++.+.+.. +.+.. +..+..++...|+.++|+..++++ ...|+ ...+..+...+...+..+.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 77778888888888888888763 34444 777777888888888888888887 44554 3445566667777778888
Q ss_pred HHHHHHHhhcCChH--------HHHHHHHHHHH-----cCCh---hHHHHHHHHHHHc-CCCCCHH-HHH----HHHHHh
Q 012360 170 AREVFDEIVDKDIV--------LWRSMMHGCVK-----AKQP---EEALELFKKMIDE-GVTPDEE-VMV----SVLSAC 227 (465)
Q Consensus 170 a~~~~~~~~~~~~~--------~~~~l~~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~ll~~~ 227 (465)
|++.++.... ++. ....++..... .+++ ++|++.++.+.+. ...|+.. .+. ..+..+
T Consensus 169 Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 8887776654 211 11222222211 1223 5666677666643 1222211 111 112333
Q ss_pred ccchhhHhHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------hhhHHHHHHHHHHcCCh
Q 012360 228 SSLSNLQYGRLVHRFILQNNIT-QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD-------VVTWTTMIEGLANYGLG 299 (465)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~ 299 (465)
...|++++|...|+.+.+.+.+ |+ .....+..+|...|++++|+..|+++...+ ......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4556777777777777665422 21 122224556666777777777766543211 12334445556666777
Q ss_pred HHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 300 NEALRVFYQMERKGI-----------KPNE---ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 300 ~~a~~~~~~m~~~g~-----------~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
++|..+++.+.+... .|+. ..+..+...+...|+.++|+..++++.. ..+.+...+..+...+.
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 777777666665410 1121 1233445556666666666666666654 22334555666666666
Q ss_pred hcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 366 RAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
..|++++|++.++++.. .| +...+...+..+...|++++|+.+++++++..|+++.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 66666666666665543 33 3444555555566666666666666666666666664
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=2.3e-19 Score=173.57 Aligned_cols=356 Identities=9% Similarity=-0.027 Sum_probs=180.3
Q ss_pred HccCChHHHHHHhccCCCC------CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhh
Q 012360 29 GRMALFTDARVLFDKMPFR------DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHY 102 (465)
Q Consensus 29 ~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (465)
.+..+++.---+|...++. +..-...++..+.+.|++++|..+++........ +...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 3455555555555544421 2333445556666777777777777776665322 22334444455556677777
Q ss_pred hhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHHHHHHHHHhhc-
Q 012360 103 GKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRN-IVSLNILINGYIDMELVDLAREVFDEIVD- 179 (465)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 179 (465)
|...++.+.+.. +.+...+..+...+...|++++|...+++. ...|+ ...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 777777766653 334445566666666667777777666665 33333 33455555556666666666665554421
Q ss_pred -C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHH
Q 012360 180 -K-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257 (465)
Q Consensus 180 -~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (465)
| +...+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...++.+.+.. +.+...+..
T Consensus 174 ~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 251 (656)
T PRK15174 174 VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRS 251 (656)
T ss_pred CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 2 22222222 2345556666666666555544222223333333444455555555555555555443 223334444
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 012360 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITE 336 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~ 336 (465)
+...+...|++++|. .+|...+++..+. .|+ ...+..+...+...|++++
T Consensus 252 Lg~~l~~~G~~~eA~---------------------------~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 252 LGLAYYQSGRSREAK---------------------------LQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred HHHHHHHcCCchhhH---------------------------HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 444444444444310 0245555555543 232 3445555555555555555
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccch-HHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFIS-YKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
|+..++++... .+.+...+..+..++.+.|++++|...++.+.. .|+... +..+..++...|++++|+..|+++.+
T Consensus 303 A~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 303 AIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555532 122333444555555555555555555555432 232222 22234445555566666666666555
Q ss_pred hCCCC
Q 012360 415 LGNQS 419 (465)
Q Consensus 415 ~~p~~ 419 (465)
..|++
T Consensus 381 ~~P~~ 385 (656)
T PRK15174 381 ARASH 385 (656)
T ss_pred hChhh
Confidence 55543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.3e-20 Score=173.88 Aligned_cols=284 Identities=13% Similarity=0.053 Sum_probs=143.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccc---hhhHHHHHHHHHhCCC
Q 012360 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM---LNMENALLLMYAKCKE 134 (465)
Q Consensus 58 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 134 (465)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455666777777777766643 22334555666666666666666666666665432111 2345556666666666
Q ss_pred hHHHHHHHHhh-C-CCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCC--------hHHHHHHHHHHHHcCChhHHHHH
Q 012360 135 MDEALRLFDEM-G-SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD--------IVLWRSMMHGCVKAKQPEEALEL 204 (465)
Q Consensus 135 ~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~ 204 (465)
+++|..+|+++ . .+++..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+.+.|++++|.+.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666666 1 12234455555555555666666655555553311 11233444455555566666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCC
Q 012360 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD--CKD 282 (465)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~ 282 (465)
|+++.+.. +.+...+..+...+.+.|++++|..+++++.+.+......++..++.+|...|++++|...++++. .|+
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 65555432 112334444445555555555555555555543221112334444455555555555555544433 233
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHhh
Q 012360 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH---SGLITEGCQLFRRMG 345 (465)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 345 (465)
...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++++.+++++.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 333344444455555555555555544443 3444444444444332 234445555555444
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=3.6e-19 Score=175.92 Aligned_cols=391 Identities=9% Similarity=-0.016 Sum_probs=298.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHh
Q 012360 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK 131 (465)
Q Consensus 52 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (465)
-.-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|..+++..++.. +.+...+..++.++..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445667788999999999999997632 3445568888999999999999999999998874 4456667788899999
Q ss_pred CCChHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChhHHHHHHHH
Q 012360 132 CKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD--K-DIVLWRSMMHGCVKAKQPEEALELFKK 207 (465)
Q Consensus 132 ~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 207 (465)
.|++++|+..+++. ...|+...+..+...+...|+.++|+..+++... | +...+..+...+...|..+.|++.++.
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 99999999999998 4455433388888899999999999999999854 3 556667788888899999999999987
Q ss_pred HHHcCCCCCH------HHHHHHHHHh-----ccchhh---HhHHHHHHHHHHc-CCCCChh-HH----HHHHHHHHhcCC
Q 012360 208 MIDEGVTPDE------EVMVSVLSAC-----SSLSNL---QYGRLVHRFILQN-NITQDAF-VK----TALIDMYSKCGS 267 (465)
Q Consensus 208 ~~~~~~~~~~------~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~ 267 (465)
... .|+. .....++... ...+++ ++|...++.+.+. ...|+.. .+ ...+..+...|+
T Consensus 176 ~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 176 ANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred CCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 654 2321 0112222222 222344 7788888888764 2223221 11 111334567799
Q ss_pred HHHHHHHHhcCCCCC---hh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHH
Q 012360 268 LEEALVTFYKTDCKD---VV-TWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-----EATFVSVLAACRHSGLITEGC 338 (465)
Q Consensus 268 ~~~a~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~ 338 (465)
+++|+..|+.+...+ +. .-..+...|...|++++|..+|+++.+. .|. ......+..++...|++++|.
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999987532 21 2233577899999999999999998765 332 245566777889999999999
Q ss_pred HHHHHhhcCCC----------CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChH
Q 012360 339 QLFRRMGGVYR----------VQPT---IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFD 403 (465)
Q Consensus 339 ~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 403 (465)
.+++.+..... -.|+ ...+..+...+...|++++|++.++++.. +.+...+..++..+...|+++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 99999985311 0122 23455678889999999999999998754 346778899999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 404 LGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 404 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+|++.++++++..|++...+..++..+...|++++|..+++++.+.
T Consensus 411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988764
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=6e-19 Score=170.72 Aligned_cols=320 Identities=12% Similarity=-0.011 Sum_probs=219.4
Q ss_pred HHHHHHhCCChHHHHHHHHhh-CCCC-CchhHHHHHHHHHhcCChHHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChh
Q 012360 125 LLLMYAKCKEMDEALRLFDEM-GSRR-NIVSLNILINGYIDMELVDLAREVFDEIVD--K-DIVLWRSMMHGCVKAKQPE 199 (465)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~ 199 (465)
++..+.+.|++++|..+++.. ...| +...+..++.+....|++++|...|+++.. | +...+..+...+...|+++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 344444555555555555544 2222 233344444444455555555555555522 2 3445566666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 012360 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279 (465)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 279 (465)
+|...++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.
T Consensus 128 ~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 128 TVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 6666666666531 223445555566666666777776666665554322 22222222 23566677777777776644
Q ss_pred CC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhhcCCCCC
Q 012360 280 CK----DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE----GCQLFRRMGGVYRVQ 351 (465)
Q Consensus 280 ~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~ 351 (465)
+. +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++ |...++++.+. .+
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P 281 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NS 281 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CC
Confidence 32 22334445677888999999999999988763 3345677888899999999986 89999999853 34
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 352 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
.+...+..+...+...|++++|...+++... .| +...+..+..++...|++++|+..++++.+.+|.+...+..++.+
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a 361 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA 361 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 4677889999999999999999999998754 34 556778889999999999999999999999999988767778899
Q ss_pred HhhcCChHHHHHHHHHHHHhc
Q 012360 430 YALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 430 ~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+...|++++|...+++..+..
T Consensus 362 l~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999876553
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=5.7e-18 Score=167.77 Aligned_cols=320 Identities=10% Similarity=-0.013 Sum_probs=245.0
Q ss_pred HHHHHHHhCCChHHHHHHHHhh-CCCCCc----hhHHHHHHHHHhcCC---hHHHHHH----------------------
Q 012360 124 ALLLMYAKCKEMDEALRLFDEM-GSRRNI----VSLNILINGYIDMEL---VDLAREV---------------------- 173 (465)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~---~~~a~~~---------------------- 173 (465)
.+.-...+.|+.++|.++|+.. ..+++. ..-.-++..|.+.+. ..++..+
T Consensus 381 q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (987)
T PRK09782 381 QLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADN 460 (987)
T ss_pred HHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhh
Confidence 3344456788999999999988 213322 233456667766555 2222222
Q ss_pred ---HHHhhc---C--ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHH
Q 012360 174 ---FDEIVD---K--DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245 (465)
Q Consensus 174 ---~~~~~~---~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (465)
+..... + +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++.+..
T Consensus 461 ~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 461 CPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 222221 2 55677778877776 8999999988888774 46655544445556789999999999999866
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 012360 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT---TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322 (465)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 322 (465)
. +|+...+..+..++.+.|+.++|...++.....++.... .+.......|++++|...+++..+. .|+...+.
T Consensus 538 ~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~ 613 (987)
T PRK09782 538 H--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYV 613 (987)
T ss_pred c--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 4 344455667788899999999999999877654333333 3333444559999999999999987 67888899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcC
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYS 400 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~ 400 (465)
.+..++.+.|++++|+..++++... .+.+...+..+..++...|++++|+..+++... .| ++..+..+..++...|
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999953 344677888999999999999999999998754 34 6778999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC
Q 012360 401 EFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 401 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
++++|+..++++++..|++..+....++...+..+++.|.+-+++.-...+.
T Consensus 692 d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 692 DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999999999999999999999999999999999988876554443
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=8.4e-18 Score=163.35 Aligned_cols=389 Identities=8% Similarity=-0.020 Sum_probs=269.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHh
Q 012360 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK 131 (465)
Q Consensus 52 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (465)
+......+.+.|++++|+..|++.... .|+...|..+..++...|++++|.+.++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445667788889999999999998764 5777888888888999999999999999988864 4456678888899999
Q ss_pred CCChHHHHHHHHhh-CCCC-CchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012360 132 CKEMDEALRLFDEM-GSRR-NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209 (465)
Q Consensus 132 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 209 (465)
.|++++|+..|... ...+ +......++..+........+...++.-. ++...+..+.. |...........-+....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 99999998888765 1111 11111222222222111223333332221 12222222222 222222222222222211
Q ss_pred HcCCCCCH-HHHHHHHH---HhccchhhHhHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C
Q 012360 210 DEGVTPDE-EVMVSVLS---ACSSLSNLQYGRLVHRFILQNN--ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--K 281 (465)
Q Consensus 210 ~~~~~~~~-~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 281 (465)
+ ..+.. ..+..+.. -....+++++|...|+...+.+ .+.....+..+..++...|++++|+..|++... |
T Consensus 285 ~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 285 E--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred c--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 1 11111 01111110 1134578999999999998865 233456788888999999999999999998653 3
Q ss_pred -ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH
Q 012360 282 -DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360 (465)
Q Consensus 282 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 360 (465)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..|++..+. .+.+...+..+
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~l 439 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQL 439 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHH
Confidence 35578888899999999999999999998762 234678889999999999999999999999853 34467778889
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHH-------HHHHHh
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL-------LSNFYA 431 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~ 431 (465)
..++.+.|++++|...+++... .| ++..++.+...+...|++++|++.|++++++.|.....+.. .+..+.
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 9999999999999999998654 34 67788999999999999999999999999998865432221 122334
Q ss_pred hcCChHHHHHHHHHHHHhc
Q 012360 432 LEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 432 ~~g~~~~a~~~~~~~~~~~ 450 (465)
..|++++|..++++..+..
T Consensus 520 ~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIID 538 (615)
T ss_pred HhhhHHHHHHHHHHHHhcC
Confidence 4699999999999876653
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=7.2e-17 Score=156.82 Aligned_cols=421 Identities=10% Similarity=-0.006 Sum_probs=295.9
Q ss_pred HHHHHccCChHHHHHHhccCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhh
Q 012360 25 IHFYGRMALFTDARVLFDKMPFRDVG---SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLH 101 (465)
Q Consensus 25 ~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (465)
+-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.... ..........+...+...|+++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 34457789999999999988743322 2338888888899999999999998721 1112222333355777889999
Q ss_pred hhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc-
Q 012360 102 YGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD- 179 (465)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 179 (465)
+|.++++.+.+.. +.+...+..++..+...++.++|++.++++ ...|+...+..++..+...++..+|++.++++.+
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999999886 344666678888899999999999999998 5567766664454455456666669999998844
Q ss_pred -C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH------HHHHHHHh-----ccchhh---HhHHHHHHHH
Q 012360 180 -K-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV------MVSVLSAC-----SSLSNL---QYGRLVHRFI 243 (465)
Q Consensus 180 -~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~ll~~~-----~~~~~~---~~a~~~~~~~ 243 (465)
| +...+..++.++.+.|-...|.++..+-... +.+.... ....++.- ....++ +.|..-++.+
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3 5677788888889999888888777654321 1111110 11111111 112233 3344444444
Q ss_pred HHc-CCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHhcCCCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012360 244 LQN-NITQDA-----FVKTALIDMYSKCGSLEEALVTFYKTDCK----DVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313 (465)
Q Consensus 244 ~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 313 (465)
... +..|.. .+..-.+-++...|+..++++.|+.+..+ ...+-..+..+|...+++++|..+++.+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 442 111221 12234456677788999999999988743 33456678888999999999999999986642
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC----------CCC---hhhHHHHHHHHHhcCCHHHHHH
Q 012360 314 -----IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV----------QPT---IEHFVCLVDLLSRAGLLYQAEE 375 (465)
Q Consensus 314 -----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~l~~~~~~~g~~~~A~~ 375 (465)
..++......|.-++...+++++|..+++++.+.... .|+ ...+..++..+.-.|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1223334567888899999999999999998852110 122 1233456777888999999999
Q ss_pred HHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 376 FIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 376 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.++++.. +.|......+...+...|.+.+|++.++.+..+.|++..+....+.++...|+|.+|..+.+...+
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9998754 458888888899999999999999999888889999999999999999999999999888866644
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=2e-16 Score=153.84 Aligned_cols=412 Identities=9% Similarity=0.016 Sum_probs=307.8
Q ss_pred ccchhHHHHHhccCCcc--hhhhHHHHHHHccCChHHHHHHhccCCCCCcc-cHHHH--HHHHHhcCChhHHHHHHHHHH
Q 012360 2 GKGLHAHVTKTALDSDI--YVGNSLIHFYGRMALFTDARVLFDKMPFRDVG-SWNTL--MSIYNDFSDSGEVLILFKQLI 76 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~~a~~~~~~m~ 76 (465)
|...+....+.. |+. .++ .++..+...|+.++|+..+++...|+.. .+..+ ...+...|++++|+++|+++.
T Consensus 53 Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL 129 (822)
T PRK14574 53 VLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSL 129 (822)
T ss_pred HHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555665544 443 355 8888899999999999999999876444 34444 457778899999999999999
Q ss_pred HcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCC-CchhH
Q 012360 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRR-NIVSL 154 (465)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~ 154 (465)
+.. +-++..+..++..+...++.++|++.++.+.+. .|+...+..++..+...++..+|++.++++ ...| +...+
T Consensus 130 ~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~ 206 (822)
T PRK14574 130 KKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVL 206 (822)
T ss_pred hhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHH
Confidence 864 334566667788889999999999999999876 445555555555555567776799999999 4456 56677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhcC-ChHH--------HHHHHHHH-H----HcC---ChhHHHHHHHHHHHc-CCCCC
Q 012360 155 NILINGYIDMELVDLAREVFDEIVDK-DIVL--------WRSMMHGC-V----KAK---QPEEALELFKKMIDE-GVTPD 216 (465)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~l~~~~-~----~~g---~~~~a~~~~~~~~~~-~~~~~ 216 (465)
..+...+.+.|-...|.++...-+.- +... ....++.- . ... -.+.|+.-++.+... +..|.
T Consensus 207 ~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~ 286 (822)
T PRK14574 207 KNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPE 286 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCc
Confidence 88899999999999999888765431 1111 11111110 0 111 234566666666652 22233
Q ss_pred H-HHH----HHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---------C
Q 012360 217 E-EVM----VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK---------D 282 (465)
Q Consensus 217 ~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~ 282 (465)
. ..| .-.+-++...++..+++..|+.+...+.+....+...+..+|...+++++|..+|+.+..+ +
T Consensus 287 ~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~ 366 (822)
T PRK14574 287 AQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD 366 (822)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc
Confidence 2 222 2345567889999999999999999887766778899999999999999999999986432 2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CC--CHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 012360 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGI-----------KP--NEA-TFVSVLAACRHSGLITEGCQLFRRMGGVY 348 (465)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-----------~p--~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 348 (465)
......|.-++...+++++|..+++++.+.-. .| |-. .+..++..+...|+..+|++.++++..
T Consensus 367 ~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~-- 444 (822)
T PRK14574 367 LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS-- 444 (822)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 22346788999999999999999999987411 12 222 345566788899999999999999985
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 349 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.-|-|......+.+.+...|.+.+|+..++.... +.+..+....+.++...+++++|..+.+.+.+..|+++.
T Consensus 445 ~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 445 TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 4456888999999999999999999999987654 336677788888999999999999999999999999986
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3.3e-17 Score=152.94 Aligned_cols=427 Identities=13% Similarity=0.060 Sum_probs=283.6
Q ss_pred CcchhhhHHHHHHHccCChHHHHHHhccCCCCC------cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhh--H
Q 012360 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRD------VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKIT--L 87 (465)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~ 87 (465)
.||.+.+.|.+.|--.|+++.+..+.+.+...+ ..+|-.+.++|-..|++++|...|....+. .||.++ +
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 456666666676666777777776666554221 234666667777777777777777665543 344333 3
Q ss_pred HHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCC----ChHHHHHHHHhh--CCCCCchhHHHHHHHH
Q 012360 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK----EMDEALRLFDEM--GSRRNIVSLNILINGY 161 (465)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~--~~~~~~~~~~~l~~~~ 161 (465)
.-+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+. ..+.|...|-.+...+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 345566666777777777777776653 333444445555555543 344555555444 2233455555555554
Q ss_pred HhcCChHHHHHHHHHh--------hcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCCH------HHHHHHH
Q 012360 162 IDMELVDLAREVFDEI--------VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE---GVTPDE------EVMVSVL 224 (465)
Q Consensus 162 ~~~~~~~~a~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~ll 224 (465)
...+-+.. +..|... ....+...|.+...+...|++..|...|...... ...+|. .+--.+.
T Consensus 425 e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 44333322 4333332 2235566777777778888888888888776653 122232 1222344
Q ss_pred HHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHH
Q 012360 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNE 301 (465)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 301 (465)
...-..++.+.|.+.|+.+.+.. +.-...|..++......+...+|...+..+. ..++..+..+...+.....+..
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcc
Confidence 45556677888888888887753 2223444445444444577788888887655 3466777778888888888888
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcC
Q 012360 302 ALRVFYQMERKG-IKPNEATFVSVLAACRH------------SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368 (465)
Q Consensus 302 a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 368 (465)
|.+-|....+.- ..+|..+...|.+.|.. .+..++|+++|.++.+ ..+.|...-+-+.-.+...|
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhcc
Confidence 888777665532 23566666666665543 2457789999999885 34567888888899999999
Q ss_pred CHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHhhcCChHHHHHHHH
Q 012360 369 LLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLG--NQSHEAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 369 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
++.+|..+|..+.+ .....+|-.+..+|...|+|..|+++|+...+.. .+++.+...|+.++.+.|.+.+|.+.+.
T Consensus 661 ~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999876 3467889999999999999999999999998854 4677789999999999999999998887
Q ss_pred HHHHh
Q 012360 445 NMKEL 449 (465)
Q Consensus 445 ~~~~~ 449 (465)
.....
T Consensus 741 ~a~~~ 745 (1018)
T KOG2002|consen 741 KARHL 745 (1018)
T ss_pred HHHHh
Confidence 65543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.6e-15 Score=141.94 Aligned_cols=418 Identities=12% Similarity=0.081 Sum_probs=222.1
Q ss_pred HHHHccCChHHHHHHhccCCCCCcccHHHHHH---HHHhc---CChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhh
Q 012360 26 HFYGRMALFTDARVLFDKMPFRDVGSWNTLMS---IYNDF---SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99 (465)
Q Consensus 26 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 99 (465)
..+.+.|+.+.|+..|+...+-|+..-++++. .-... ..+..++.++...-..+ .-++...+.|.+-+...|+
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhccc
Confidence 44455566666665555554333322222221 11112 23344445544443322 2355566667777777788
Q ss_pred hhhhhHHHHHHHHhCCc--cchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCch--hHHHHHHHHHhcCChHHHHHHH
Q 012360 100 LHYGKTVHCYATKVGLE--YMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIV--SLNILINGYIDMELVDLAREVF 174 (465)
Q Consensus 100 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~ 174 (465)
+..+..+...+...... .-...|-.+.++|-..|++++|...|-+. +..|+.. .+.-+...+.+.|+++.+...|
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHH
Confidence 88888877777765421 12234566777888888888888887666 4455443 3445667777888888888888
Q ss_pred HHhhc--C-ChHHHHHHHHHHHHcC----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHH----
Q 012360 175 DEIVD--K-DIVLWRSMMHGCVKAK----QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI---- 243 (465)
Q Consensus 175 ~~~~~--~-~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---- 243 (465)
+.+.. | +..+..++...|...+ ..+.|..++.+..+.- +.|...|..+...+....-+.. ...|..+
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L 443 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDIL 443 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHH
Confidence 77743 2 4455666666666554 4566666666666542 3455666666555544333322 4444433
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------CCh------hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 012360 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-------KDV------VTWTTMIEGLANYGLGNEALRVFYQME 310 (465)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~ 310 (465)
...+.++.+...|.+...+...|++++|...|..... ++. .+--.+...+-..++.+.|.+.|..+.
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il 523 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL 523 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3344456677777777777777777777777754331 111 111223333444556666666666666
Q ss_pred HCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CCc
Q 012360 311 RKGIKPNEA-TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----EDK 385 (465)
Q Consensus 311 ~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~ 385 (465)
+. .|+.. .|..++-.....++..+|...+...... ...++..+..+.+.+.+...+..|.+-|..+.. .+|
T Consensus 524 ke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 524 KE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 65 45432 3333332222345566666666665542 222333334444455555555555543333221 223
Q ss_pred cchHHHHHHHHH------------hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 386 FISYKALLSACI------------TYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 386 ~~~~~~l~~~~~------------~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
..+.-.|+..|. ..+..++|+++|.++++.+|.+..+-+.++..+...|++++|+.+|.+.++..
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 333333333322 11234455555555555555555555555555555555555555555554443
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=9.4e-16 Score=131.74 Aligned_cols=410 Identities=10% Similarity=0.049 Sum_probs=275.2
Q ss_pred hhhhHHHHHHHccCChHHHHHHhccCCCC----Cccc-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch--h----hH
Q 012360 19 YVGNSLIHFYGRMALFTDARVLFDKMPFR----DVGS-WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADK--I----TL 87 (465)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~----~~ 87 (465)
.+...|.+-|..+....+|+..++-+.+. |.-. --.+...+.+.+++.+|+..|+..... .|+. . ..
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil 279 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHH
Confidence 34445556666667788999988876633 2221 123455678889999999999887764 3332 2 34
Q ss_pred HHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh---CC------------CCCch
Q 012360 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM---GS------------RRNIV 152 (465)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~------------~~~~~ 152 (465)
+.+...+.+.|+++.|...|+...+. .|+..+-..|+-++..-|+.++..+.|.+| .. .|+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44555678899999999999988875 567666555666777789999999999988 11 12222
Q ss_pred hHHHH-----HHHHHhcCC--hHHHHHHHHHhhcC----ChH-------------HHHH--------HHHHHHHcCChhH
Q 012360 153 SLNIL-----INGYIDMEL--VDLAREVFDEIVDK----DIV-------------LWRS--------MMHGCVKAKQPEE 200 (465)
Q Consensus 153 ~~~~l-----~~~~~~~~~--~~~a~~~~~~~~~~----~~~-------------~~~~--------l~~~~~~~g~~~~ 200 (465)
..+.- +.-.-+.++ .++++-.--+++.| +-. .+.. -...+.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 22221 222222211 22222222222222 110 0111 1224678888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH------------------------------------HHhccchhhHhHHHHHHHHH
Q 012360 201 ALELFKKMIDEGVTPDEEVMVSVL------------------------------------SACSSLSNLQYGRLVHRFIL 244 (465)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~ll------------------------------------~~~~~~~~~~~a~~~~~~~~ 244 (465)
|+++++-..+..-+..+..-+.+. ......|++++|...|++.+
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 888887766543221111111110 11223467888888888887
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012360 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321 (465)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 321 (465)
...-......|+ +.-.+-..|++++|++.|-++. ..+....-.+...|-...++.+|++++.+.... ++.|+...
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 765333333333 4455677889999998886644 456667777778888888999999988776554 34467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCccchHHHHHHHHH-hc
Q 012360 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM-PAEDKFISYKALLSACI-TY 399 (465)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~-~~ 399 (465)
..|...|-+.|+..+|.+.+-.--. -++-+..+...|...|....-+++|+.+|++. .-.|+..-|..++..|. +.
T Consensus 596 skl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 8899999999999999887665543 44567888888888888888999999999875 34789999998887665 68
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCh
Q 012360 400 SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436 (465)
Q Consensus 400 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 436 (465)
|++.+|..+|+......|.+...+..|.+.+...|..
T Consensus 674 gnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred ccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999888753
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=4.3e-14 Score=120.71 Aligned_cols=393 Identities=14% Similarity=0.081 Sum_probs=262.7
Q ss_pred chhHHHHHhccCCcchhhhHHHHHHHccC--ChH-------------------------HHHHHhccCCCCCcccHHHHH
Q 012360 4 GLHAHVTKTALDSDIYVGNSLIHFYGRMA--LFT-------------------------DARVLFDKMPFRDVGSWNTLM 56 (465)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~~-------------------------~A~~~~~~~~~~~~~~~~~l~ 56 (465)
.+++.|.+.|++-+..+-..|+..-+-.+ ++. -|. ++-+..+.+..+|..+|
T Consensus 136 ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L~~E~~PKT~et~s~mI 214 (625)
T KOG4422|consen 136 ILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-LLFETLPKTDETVSIMI 214 (625)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-HHHhhcCCCchhHHHHH
Confidence 47888999998888887777766543322 111 111 22223344677999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChH
Q 012360 57 SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136 (465)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 136 (465)
.++++--..+.|.++|++-.....+.+..+||.+|.+-+-. ...+++.+|......||..++|+++.+..+.|+++
T Consensus 215 ~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~ 290 (625)
T KOG4422|consen 215 AGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFE 290 (625)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchH
Confidence 99999999999999999998887889999999999765433 33789999999999999999999999999999887
Q ss_pred HHHH----HHHhh---CCCCCchhHHHHHHHHHhcCChHH-HHHHHHHhh-----------cC-ChHHHHHHHHHHHHcC
Q 012360 137 EALR----LFDEM---GSRRNIVSLNILINGYIDMELVDL-AREVFDEIV-----------DK-DIVLWRSMMHGCVKAK 196 (465)
Q Consensus 137 ~A~~----~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~-----------~~-~~~~~~~l~~~~~~~g 196 (465)
.|.. ++.+| |+.|...+|..+|..+++.++..+ +..+...+. .| |...|...|..|.+..
T Consensus 291 ~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~ 370 (625)
T KOG4422|consen 291 DARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLR 370 (625)
T ss_pred HHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhh
Confidence 6554 44444 999999999999999998887644 444444431 11 4556777788888888
Q ss_pred ChhHHHHHHHHHHHcC----CCCC---HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 012360 197 QPEEALELFKKMIDEG----VTPD---EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269 (465)
Q Consensus 197 ~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (465)
+.+.|.++-.-+.... +.|+ ..-|..+....+.....+.....|+.|+-+-+-|+..+...++++....|.++
T Consensus 371 d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e 450 (625)
T KOG4422|consen 371 DLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLE 450 (625)
T ss_pred hHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcch
Confidence 8888877765544211 2232 22345666667777888888888888887777788888888888777777777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH-HHHHHHHHHhhcC
Q 012360 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS-GLI-TEGCQLFRRMGGV 347 (465)
Q Consensus 270 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-~~~-~~a~~~~~~~~~~ 347 (465)
-.-+++..+..- ...-+-+--++++..|......|+...-..+-....+. -++ +.....-.++.+.
T Consensus 451 ~ipRiw~D~~~~------------ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 451 VIPRIWKDSKEY------------GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred hHHHHHHHHHHh------------hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 777766554321 11112222334444455444445433222222222111 122 2222233344432
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC----CccchHH---HHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE----DKFISYK---ALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 348 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
. -.....+...-.+.+.|+.++|.+++.-+..+ |-....+ .++......++...|+.+++-|...+
T Consensus 519 -~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 519 -D--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred -c--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 3 34446677777889999999999998876432 2233445 45555567788889999999887766
No 29
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.4e-13 Score=119.16 Aligned_cols=422 Identities=10% Similarity=0.061 Sum_probs=304.4
Q ss_pred hhhHHHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh-hHHHHHHHhc
Q 012360 20 VGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKI-TLVILFSACA 95 (465)
Q Consensus 20 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~ 95 (465)
.|-...+.=...+++..|+.+|+... .++...|-..+..-.++.....|..++++.... -|... .|...+-.--
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHH
Confidence 33333333344566777888888766 446677888888888889999999999988764 34433 3333343444
Q ss_pred chhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 012360 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVF 174 (465)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 174 (465)
..|++..|.++|+...+ ..|+...|++.++.=.+...++.|..++++. -+.|++.+|--....-.++|++..|..+|
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 56889999999988876 4789999999999999999999999999988 66899999998888888999999999998
Q ss_pred HHhhcC------ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhccchhhH---hHH-----H
Q 012360 175 DEIVDK------DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD--EEVMVSVLSACSSLSNLQ---YGR-----L 238 (465)
Q Consensus 175 ~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~---~a~-----~ 238 (465)
+...+. +...+.+....-.++..++.|.-+|+-.++. ++.+ ...|......--+-|+.. .++ -
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 877553 2344555555555677788888888887775 2222 233444433322334433 222 1
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh---hhHHHHHH--------HHHHcCChHHHHHH
Q 012360 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDV---VTWTTMIE--------GLANYGLGNEALRV 305 (465)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~~~l~~--------~~~~~~~~~~a~~~ 305 (465)
-++.+++.+ +.|-.+|-..+..-...|+.+...++|++... |.. ..|...|- .-....+.+.+.++
T Consensus 310 qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 234444443 56677888888888888999999999988662 211 12222221 12346788999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 306 FYQMERKGIKPNEATFVSVLAAC----RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 306 ~~~m~~~g~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
++...+. ++....||.-+--.| .++.+...|.+++..+. |.-|...+|...|..-.+.++++.+.+++++..
T Consensus 389 yq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 389 YQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9998884 333456766554444 46789999999999998 778999999999999999999999999999876
Q ss_pred C-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC-CC-CchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 382 A-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLG-NQ-SHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 382 ~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
. .| +-.+|......-...|+.+.|..+|+-+++.. -+ ....|-..++.-...|.++.|+.+++++.+..-
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 5 44 67788888888888999999999999888754 22 223577888888899999999999998877644
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=5.5e-13 Score=119.95 Aligned_cols=430 Identities=12% Similarity=0.061 Sum_probs=315.2
Q ss_pred HHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCchhhHHHHHHHhcch
Q 012360 25 IHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQL----IFEGIVADKITLVILFSACARL 97 (465)
Q Consensus 25 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~l~~~~~~~ 97 (465)
.-+|++..-++.|..+++... +.+...|.+-...--.+|+.+....++++- ...|+..+...|..=...|-..
T Consensus 413 wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 345667777888888887665 557888888777778889999888887764 4578888888888888888888
Q ss_pred hhhhhhhHHHHHHHHhCCccc--hhhHHHHHHHHHhCCChHHHHHHHHhh-CCCC-CchhHHHHHHHHHhcCChHHHHHH
Q 012360 98 EKLHYGKTVHCYATKVGLEYM--LNMENALLLMYAKCKEMDEALRLFDEM-GSRR-NIVSLNILINGYIDMELVDLAREV 173 (465)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 173 (465)
|..-.+..+....+..|+... ..+|+.-...|.+.+.++-|..+|... .+-| +...|......--..|..++-..+
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 888888888888888876533 457778888888888888888888776 3344 455666666666677888888888
Q ss_pred HHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCC
Q 012360 174 FDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250 (465)
Q Consensus 174 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 250 (465)
|++... .....|-.....+-..|+...|..++....+.... +...+...+..-.....++.|..+|.+.... .|
T Consensus 573 lqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sg 649 (913)
T KOG0495|consen 573 LQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SG 649 (913)
T ss_pred HHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CC
Confidence 877743 34566666667777778888888888887775332 5566677777777778888888888777664 46
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 012360 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDV-VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLA 326 (465)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~ 326 (465)
+..+|.--+....-.++.++|.+++++..+ |+. ..|..+.+.+-+.++.+.|.+.|..-.+. -|+ ...|..|..
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLak 727 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAK 727 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHH
Confidence 666776666666667778888888776553 332 35666667777777777777777654443 333 345556666
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC------------------------
Q 012360 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA------------------------ 382 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------ 382 (465)
.--+.|.+-+|..++++..- ..+.+...|...|+.-.+.|..+.|..+..+...
T Consensus 728 leEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence 66667777777777777764 3355677777777777777777777665543210
Q ss_pred --------CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCCC
Q 012360 383 --------EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK 454 (465)
Q Consensus 383 --------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 454 (465)
..|+...-.+...+....++++|.+.|.++++.+|++..+|..+...+.+.|.-++-.+++.+.... +|.
T Consensus 806 s~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~ 883 (913)
T KOG0495|consen 806 SIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPT 883 (913)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCC
Confidence 2255566777788888889999999999999999999999999999999999999999999987543 456
Q ss_pred CCCeeeecC
Q 012360 455 PGNSIIDLK 463 (465)
Q Consensus 455 ~~~~~~~~~ 463 (465)
-|..|.-+.
T Consensus 884 hG~~W~avS 892 (913)
T KOG0495|consen 884 HGELWQAVS 892 (913)
T ss_pred CCcHHHHHh
Confidence 666676543
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=8.9e-18 Score=146.88 Aligned_cols=256 Identities=17% Similarity=0.125 Sum_probs=114.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 012360 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV-MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265 (465)
Q Consensus 187 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (465)
.+...+.+.|++++|++++++......+|+... +..+...+...++++.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 346677888999999999866554432344444 444555566788899999999998876533 56667777777 688
Q ss_pred CCHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012360 266 GSLEEALVTFYKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFR 342 (465)
Q Consensus 266 ~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 342 (465)
+++++|.++++..- .+++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998887654 3466677788888999999999999999987643 23466778888899999999999999999
Q ss_pred HhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 012360 343 RMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 343 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 419 (465)
++.+. .| +......++..+...|+.+++.++++.... +.++..|..+..++...|++++|...++++.+..|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99953 45 577888999999999999998888877644 3477788999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 420 HEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 420 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+.....++.++...|+.++|..+.++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999988654
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=1.7e-14 Score=134.18 Aligned_cols=331 Identities=13% Similarity=0.114 Sum_probs=229.2
Q ss_pred HHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHHHHh---hcCChHHHHHHHHHHHHcCChhH
Q 012360 126 LLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDEI---VDKDIVLWRSMMHGCVKAKQPEE 200 (465)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 200 (465)
.+.....|++++|.+++.++ ..+....+|.+|...|-+.|+.+++...+-.. .+.|...|..+.....+.|++++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 33344448888888888777 33446667888888888888887777665433 33466777777777777888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChh----HHHHHHHHHHhcCCHHHHHHHHh
Q 012360 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF----VKTALIDMYSKCGSLEEALVTFY 276 (465)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~ 276 (465)
|.-.|.+.++.. +++...+---...|-+.|+...|...|.++.....+.+.. .....++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888877753 3344444445566777788888888888777764322222 22234555666676677777776
Q ss_pred cCCC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------------------------CCCHHHHHHH
Q 012360 277 KTDC-----KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI---------------------------KPNEATFVSV 324 (465)
Q Consensus 277 ~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---------------------------~p~~~~~~~l 324 (465)
.... -+...++.++..|.+...++.|......+..... .++... -.+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhH
Confidence 5442 2344677778888888888888777777665211 112222 112
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC---ccchHHHHHHHHHhc
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVYR--VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED---KFISYKALLSACITY 399 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~ 399 (465)
.-++.+....+....+....... . +.-+...|.-+.++|...|++.+|+++|..+...+ +...|..++.+|...
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 22333333333333344444332 4 33467789999999999999999999999997744 566899999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCee
Q 012360 400 SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSI 459 (465)
Q Consensus 400 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 459 (465)
|.+++|++.|++++...|++..+...|...+.+.|+.++|.+.++.+...+....++..|
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999999999876444333355554
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.3e-13 Score=117.94 Aligned_cols=355 Identities=10% Similarity=0.074 Sum_probs=253.6
Q ss_pred HHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCC----CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 012360 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF----RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADK 84 (465)
Q Consensus 9 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 84 (465)
+...-.+.+..++..+|..+|+-...+.|.+++++... -+..+||.+|.+-.-. ...+++.+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCch
Confidence 44445677899999999999999999999999998873 3667888888764433 337899999999999999
Q ss_pred hhHHHHHHHhcchhhhhh----hhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHH-HHHHHHhh----------CCCC
Q 012360 85 ITLVILFSACARLEKLHY----GKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDE-ALRLFDEM----------GSRR 149 (465)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~----------~~~~ 149 (465)
.|+|.++.+.++.|+++. |.+++.+|.+.|+.|+..+|..+|..+++.++..+ |..++.++ .+.|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999997765 56788899999999999999999999999988754 44444444 2223
Q ss_pred -CchhHHHHHHHHHhcCChHHHHHHHHHhhcC-----------ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 012360 150 -NIVSLNILINGYIDMELVDLAREVFDEIVDK-----------DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217 (465)
Q Consensus 150 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 217 (465)
|..-|..-+..|....+.+.|.++..-+... ...-|..+....+.....+.-...|+.|.-.-.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 3445667788888889988888776655321 2234667777888889999999999999988788999
Q ss_pred HHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHH--
Q 012360 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN-- 295 (465)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-- 295 (465)
.+...++++....+.++-.-+++..++..|..........++..+++.. ..|+...-..+-.+..+
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876554444444444444322 01221111111111111
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH---HHHHHHHhcCCHHH
Q 012360 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV---CLVDLLSRAGLLYQ 372 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~ 372 (465)
..-.+.....-.+|.+. .......+.++..+.+.|..++|.+++..+.+.++--|-....+ .+++.-.+.+.+..
T Consensus 502 ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 11112222333445544 33445566677777889999999999998865534344444444 55566667778888
Q ss_pred HHHHHHhCC
Q 012360 373 AEEFIKIMP 381 (465)
Q Consensus 373 A~~~~~~~~ 381 (465)
|...++-+.
T Consensus 580 A~~~lQ~a~ 588 (625)
T KOG4422|consen 580 AIEVLQLAS 588 (625)
T ss_pred HHHHHHHHH
Confidence 888887774
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=4.8e-13 Score=124.71 Aligned_cols=421 Identities=13% Similarity=0.102 Sum_probs=293.7
Q ss_pred HHHHHHHccCChHHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhh
Q 012360 23 SLIHFYGRMALFTDARVLFDKMPF---RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99 (465)
Q Consensus 23 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 99 (465)
...+.+.-.|+.++|.+++.++.+ .+...|..|...|-..|+.+++...+-..-..+ +-|...|..+.......|+
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 334444445999999999999873 367799999999999999999988775554332 4466788888888899999
Q ss_pred hhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCC--Cch----hHHHHHHHHHhcCChHHHHH
Q 012360 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRR--NIV----SLNILINGYIDMELVDLARE 172 (465)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~--~~~----~~~~l~~~~~~~~~~~~a~~ 172 (465)
++.|.-++.++++.. +++....-.-+..|-+.|+...|.+.|.++ ...| |.. .....+..+...++.+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999986 555555555678899999999999999998 3334 212 22334566667777788988
Q ss_pred HHHHhhcC-----ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---------------------------HHHH
Q 012360 173 VFDEIVDK-----DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD---------------------------EEVM 220 (465)
Q Consensus 173 ~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------------------~~~~ 220 (465)
.++..... +...++.++..|.+..+++.|......+......+| ...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 88877542 446788999999999999999988887766222222 222
Q ss_pred HHHHHHhccchhhHhHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhhHHHHHHHHH
Q 012360 221 VSVLSACSSLSNLQYGRLVHRFILQNN--ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC----KDVVTWTTMIEGLA 294 (465)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~ 294 (465)
.-++-++.+....+....+...+.+.+ +..+...|.-+..+|...|++.+|+.+|..+.. .+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122233445555555666666666665 344567888999999999999999999988764 25668999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC-------CCCCCChhhHHHHHHHHHh
Q 012360 295 NYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGV-------YRVQPTIEHFVCLVDLLSR 366 (465)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 366 (465)
..|.++.|.+.|...+.. .|+ ...-..|...+.+.|+.++|.+.+..+..- .+..|+..........+.+
T Consensus 461 ~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 999999999999999877 554 345666778888999999999999986421 1334444444555566667
Q ss_pred cCCHHHHHHHHHhCC----------------------------------------C---------CC--cc---------
Q 012360 367 AGLLYQAEEFIKIMP----------------------------------------A---------ED--KF--------- 386 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~----------------------------------------~---------~~--~~--------- 386 (465)
.|+.++=..+...|. . ++ +.
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 776655322221110 0 00 00
Q ss_pred --------chHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCc----hhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 387 --------ISYKALLSACITYSEFDLGKKVANNMMKLG--NQSH----EAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 387 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
..+..++.++++.+.+++|+.+...+.+.. -.+. ..-...+.+....+++..|..+++-|..
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 113445666777888888888888877743 1111 1233445556677888888887776653
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.9e-12 Score=112.21 Aligned_cols=435 Identities=10% Similarity=0.063 Sum_probs=323.1
Q ss_pred ccchhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 012360 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--R-DVGSWNTLMSIYNDFSDSGEVLILFKQLIFE 78 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 78 (465)
|+.||++.+... ..+...|-..+.+=.++..+..|+.+|+.... | -...|-..+..--..|+...|.++|++-.+
T Consensus 92 ARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~- 169 (677)
T KOG1915|consen 92 ARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWME- 169 (677)
T ss_pred HHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc-
Confidence 678888888765 67888899999999999999999999998762 2 233555556556678999999999999877
Q ss_pred CCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh----CC-CCCchh
Q 012360 79 GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM----GS-RRNIVS 153 (465)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~-~~~~~~ 153 (465)
..|+...|.+.|+.-.+-+.++.|..+++..+-- .|+...|-.....=-+.|....|..+|+.. +. .-+...
T Consensus 170 -w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~l 246 (677)
T KOG1915|consen 170 -WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEIL 246 (677)
T ss_pred -CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4899999999999999999999999999998753 589999988888888999999999999887 21 112334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhcC-----ChHHHHHHHHHHHHcCChhHHHHH--------HHHHHHcCCCCCHHHH
Q 012360 154 LNILINGYIDMELVDLAREVFDEIVDK-----DIVLWRSMMHGCVKAKQPEEALEL--------FKKMIDEGVTPDEEVM 220 (465)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~ 220 (465)
+.++...-.++..++.|.-+|+-.++. ....|......--+-|+.....+. |+.+++.+ +-|-.++
T Consensus 247 fvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsW 325 (677)
T KOG1915|consen 247 FVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHH
Confidence 445555555677888888888766331 234455555544455665544433 34444442 4466677
Q ss_pred HHHHHHhccchhhHhHHHHHHHHHHcCCCCChh--HHHHHHHH--------HHhcCCHHHHHHHHhcCC---CCChhhHH
Q 012360 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAF--VKTALIDM--------YSKCGSLEEALVTFYKTD---CKDVVTWT 287 (465)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~~~~~~a~~~~~~~~---~~~~~~~~ 287 (465)
--.++.-...|+.+...++|+..+..- +|-.. .|...|-. -....+.+.+.++|+... +....+|.
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFa 404 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFA 404 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHH
Confidence 777777778899999999999998763 44221 22222211 124678888888887644 33444444
Q ss_pred HH----HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHH
Q 012360 288 TM----IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363 (465)
Q Consensus 288 ~l----~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (465)
.+ ...-.++.+...|.+++...+ |.-|-..+|...|..-.+.++++....++++..+- -+-+..+|......
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAEL 480 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHH
Confidence 43 444557789999999998876 55899999999999999999999999999999952 24477888888888
Q ss_pred HHhcCCHHHHHHHHHhCCCCCcc----chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh-----hcC
Q 012360 364 LSRAGLLYQAEEFIKIMPAEDKF----ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA-----LEG 434 (465)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g 434 (465)
-...|+.+.|..+|+-...+|.. ..|.+.|..-...|.++.|..+|+++++..+... +|...+..-. +.|
T Consensus 481 E~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~ 559 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQED 559 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccc
Confidence 88999999999999998887743 3466777777789999999999999999877665 4766665544 344
Q ss_pred -----------ChHHHHHHHHHHHH
Q 012360 435 -----------HWTEVAEARRNMKE 448 (465)
Q Consensus 435 -----------~~~~a~~~~~~~~~ 448 (465)
....|+.+|++...
T Consensus 560 ~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 560 EDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cchhhhhcchhHHHHHHHHHHHHHH
Confidence 55668888887653
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=9.8e-13 Score=118.39 Aligned_cols=428 Identities=10% Similarity=0.061 Sum_probs=336.9
Q ss_pred CCcchhhhHHHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 012360 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILF 91 (465)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 91 (465)
+.++..|... ....+.++|+-++.... +.+...|. +|.+..-++.|..+++..++. ++.+...|.+..
T Consensus 377 P~sv~LWKaA----VelE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa 447 (913)
T KOG0495|consen 377 PRSVRLWKAA----VELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAA 447 (913)
T ss_pred CchHHHHHHH----HhccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH
Confidence 4455555443 34566777998888765 33444444 456677889999999999875 677888887777
Q ss_pred HHhcchhhhhhhhHHHHHHH----HhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh---CCCC--CchhHHHHHHHHH
Q 012360 92 SACARLEKLHYGKTVHCYAT----KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM---GSRR--NIVSLNILINGYI 162 (465)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~--~~~~~~~l~~~~~ 162 (465)
..--..|+.+.+.+++++.+ ..|+..+..-|..=...|-..|..-.+..+.... |+.. -..||..-...|.
T Consensus 448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~ 527 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE 527 (913)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence 77778899999988877654 4688888888888888899999999888888776 3322 3458888899999
Q ss_pred hcCChHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHH
Q 012360 163 DMELVDLAREVFDEIVDK---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239 (465)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 239 (465)
+.+.++-|..+|....+- +...|...+..--..|..++...+|++.... ++-....+......+-..|++..|..+
T Consensus 528 k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred hcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 999999999999887552 5567777777667789999999999999986 333445555556667788999999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012360 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317 (465)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 317 (465)
+.+..+.. +.+..++..-+........++.|..+|.+.. .+....|..-+...--.++.++|.+++++..+. -|+
T Consensus 607 l~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~ 683 (913)
T KOG0495|consen 607 LDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD 683 (913)
T ss_pred HHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc
Confidence 99999876 3477889899999999999999999998765 467778877777777789999999999999887 677
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHH
Q 012360 318 E-ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLS 394 (465)
Q Consensus 318 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 394 (465)
. ..|..+.+.+.+.++.+.|...|..-.+ .++..+..|..|.+.--+.|++-+|..++++... +.+...|-..++
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir 761 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR 761 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH
Confidence 5 5788888999999999999999988775 5666788999999999999999999999998643 448889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCc------------------------------hhHHHHHHHHhhcCChHHHHHHHH
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSH------------------------------EAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~------------------------------~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
.-.+.|+.+.|..+..++++.-|.+. .+...++..+....+++.|++.|.
T Consensus 762 ~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~ 841 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFE 841 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877656553 345566666777777888888888
Q ss_pred HHHHhcCCCCCCCee
Q 012360 445 NMKELQTRKKPGNSI 459 (465)
Q Consensus 445 ~~~~~~~~~~~~~~~ 459 (465)
+....+ |+-|-.|
T Consensus 842 Ravk~d--~d~GD~w 854 (913)
T KOG0495|consen 842 RAVKKD--PDNGDAW 854 (913)
T ss_pred HHHccC--CccchHH
Confidence 665443 3444444
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.4e-13 Score=119.55 Aligned_cols=385 Identities=12% Similarity=0.025 Sum_probs=251.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc-hhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccc-hhhHHHHHHHH
Q 012360 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVAD-KITLVILFSACARLEKLHYGKTVHCYATKVGLEYM-LNMENALLLMY 129 (465)
Q Consensus 52 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 129 (465)
+.....-|.++|++++|++.|.+.++. .|| +..|.....+|...|+|+.+.+--...++.+ |+ ...+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 444556678899999999999999885 678 6677777788889999999888777776653 33 34555566677
Q ss_pred HhCCChHHHHHHHHhh---CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChH--------------------
Q 012360 130 AKCKEMDEALRLFDEM---GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD---KDIV-------------------- 183 (465)
Q Consensus 130 ~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-------------------- 183 (465)
-..|++++|+.-..-. +.-.+. ....++.-..+.--...+.+-+..-.. |+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~-s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNA-SIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccc-hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 7777777765433222 100011 111111111111111112222221000 1111
Q ss_pred ---HHHHHHHHHH--HcC---ChhHHHHHHHHHHHc-CCCCCHH---------HHHHHHHH--hccchhhHhHHHHHHHH
Q 012360 184 ---LWRSMMHGCV--KAK---QPEEALELFKKMIDE-GVTPDEE---------VMVSVLSA--CSSLSNLQYGRLVHRFI 243 (465)
Q Consensus 184 ---~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~-~~~~~~~---------~~~~ll~~--~~~~~~~~~a~~~~~~~ 243 (465)
....+..++. ..+ .+..|...+.+-... -..++.. .-..++.+ +.-.|+.-.+..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 1111111111 111 223333333221110 0011111 11122222 34567888889999988
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HH
Q 012360 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EA 319 (465)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ 319 (465)
++.... +...|..+..+|...++.++-...|++.. +.|+.+|..-.+.+.-.+++++|..=|++.+.. .|+ ..
T Consensus 353 I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~ 429 (606)
T KOG0547|consen 353 IKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAY 429 (606)
T ss_pred HhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhH
Confidence 887533 33347778888999999999999998765 457778888888888889999999999998876 554 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc-------cch--H
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK-------FIS--Y 389 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-------~~~--~ 389 (465)
.|..+.-+..+.+.++++...|++..+ .++..+.+|+.....+...+++++|.+.|+.... .|. +.. -
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 666666667789999999999999997 5667788999999999999999999999987643 221 111 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
..++..-. .+++..|+++++++++++|.....|..|+....++|+.++|+++|++..
T Consensus 508 Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 508 KALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22222222 3899999999999999999999999999999999999999999998753
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=1.1e-13 Score=119.16 Aligned_cols=396 Identities=12% Similarity=0.113 Sum_probs=272.5
Q ss_pred cHHHH---HHHHHhcCChhHHHHHHHHHHHcCCCCchhhHH-HHHHHhcchhhhhhhhHHHHHHHHhCCccc----hhhH
Q 012360 51 SWNTL---MSIYNDFSDSGEVLILFKQLIFEGIVADKITLV-ILFSACARLEKLHYGKTVHCYATKVGLEYM----LNME 122 (465)
Q Consensus 51 ~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~ 122 (465)
+|+.| ..-|..+..+.+|+..|+-..+....|+.-... .+.+.+.+.+++.+|.+.+...+..-...+ +.+.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 45544 445666777889999999988877777765443 345677888999999999998887633222 3345
Q ss_pred HHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc----------------CChHHH
Q 012360 123 NALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD----------------KDIVLW 185 (465)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~ 185 (465)
+.+...+.+.|.++.|+..|+.. ...|+..+-..|+-++..-|+.++..+.|.+++. |+....
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 55666788999999999999987 6688888766677777778999999999988832 122222
Q ss_pred HHHH-----HHHHHcC--ChhHHHHHHHHHHHcCCCCCHH-------------HHH--------HHHHHhccchhhHhHH
Q 012360 186 RSMM-----HGCVKAK--QPEEALELFKKMIDEGVTPDEE-------------VMV--------SVLSACSSLSNLQYGR 237 (465)
Q Consensus 186 ~~l~-----~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~-------------~~~--------~ll~~~~~~~~~~~a~ 237 (465)
+.-+ .-.-+.. +.++++-.--++..--+.|+.. .+. .-...+.+.|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 2222 1121211 1222222222222222333311 010 0122478999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHH------------------------------------HhcCCHHHHHHHHhcCCCC
Q 012360 238 LVHRFILQNNITQDAFVKTALIDMY------------------------------------SKCGSLEEALVTFYKTDCK 281 (465)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------------~~~~~~~~a~~~~~~~~~~ 281 (465)
++++-+.+..-..-...-+.|...+ ...|++++|.+.|++....
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 9998877654322222222221111 1346788888888877766
Q ss_pred ChhhHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH
Q 012360 282 DVVTWTTMI---EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358 (465)
Q Consensus 282 ~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 358 (465)
|...-.+|. -.+-..|+.++|++.|-++..- +..+......+...|....+..+|++++.+... -++.++....
T Consensus 520 dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ils 596 (840)
T KOG2003|consen 520 DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILS 596 (840)
T ss_pred chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHH
Confidence 665444443 3456789999999999887643 234667788888999999999999999999874 5566888999
Q ss_pred HHHHHHHhcCCHHHHHHHH-HhCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCh
Q 012360 359 CLVDLLSRAGLLYQAEEFI-KIMPAED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436 (465)
Q Consensus 359 ~l~~~~~~~g~~~~A~~~~-~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 436 (465)
.|.+.|-+.|+-..|.+.. +..+--| +..+..=|..-|....-+++++.+|+++.-..|+....-..++.++.+.|++
T Consensus 597 kl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 9999999999999999864 4444433 6667666777788888899999999999999998887445566777789999
Q ss_pred HHHHHHHHHHHHh
Q 012360 437 TEVAEARRNMKEL 449 (465)
Q Consensus 437 ~~a~~~~~~~~~~ 449 (465)
..|..+++...+.
T Consensus 677 qka~d~yk~~hrk 689 (840)
T KOG2003|consen 677 QKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987643
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=9.3e-14 Score=127.12 Aligned_cols=285 Identities=11% Similarity=0.013 Sum_probs=150.3
Q ss_pred CCChHHHHHHHHhhCCCC-CchhHHHH-HHHHHhcCChHHHHHHHHHhhc--CChHHHH--HHHHHHHHcCChhHHHHHH
Q 012360 132 CKEMDEALRLFDEMGSRR-NIVSLNIL-INGYIDMELVDLAREVFDEIVD--KDIVLWR--SMMHGCVKAKQPEEALELF 205 (465)
Q Consensus 132 ~g~~~~A~~~~~~~~~~~-~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~l~~~~~~~g~~~~a~~~~ 205 (465)
.|+++.|.+.+....... +...+..+ .....+.|+++.|.+.+.++.+ |+..... .....+...|+++.|.+.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 466666665555441111 11122112 2222455555555555555432 2221111 1233445555555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhh
Q 012360 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285 (465)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 285 (465)
+++.+.. +-+......+...|.+.|+++.|..++..+.+.+..++. ....+- ...
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~-----------------------~~a 231 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE-----------------------QQA 231 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------------------HHH
Confidence 5555432 113344444445555555555555555555544322111 111000 001
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +|+.... ++.+..
T Consensus 232 ~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l 305 (398)
T PRK10747 232 WIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRL 305 (398)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhc
Confidence 222222223334445555555554332 1335566667777777778888887777777642 3443221 223333
Q ss_pred hcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 012360 366 RAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 443 (465)
..++.+++.+..+.... .| |+..+..+...+.+.+++++|.+.|+++.+..|++.. +..++.++.+.|+.++|..++
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHH
Confidence 45777777777776544 33 4555677777788888888888888888887777665 667888888888888888777
Q ss_pred HHHHH
Q 012360 444 RNMKE 448 (465)
Q Consensus 444 ~~~~~ 448 (465)
++-..
T Consensus 385 ~~~l~ 389 (398)
T PRK10747 385 RDGLM 389 (398)
T ss_pred HHHHh
Confidence 75543
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=5.6e-13 Score=122.02 Aligned_cols=283 Identities=11% Similarity=-0.010 Sum_probs=183.2
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhh-HHHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHH--HHHHHHHhcCChHHHHH
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNM-ENALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLN--ILINGYIDMELVDLARE 172 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 172 (465)
.|+++.|++.+....+.. ++... +.....+..+.|+++.|.+.+.++ ...|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 599999998877755542 12222 333345558899999999999998 5566665443 33678889999999999
Q ss_pred HHHHhhc--C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC
Q 012360 173 VFDEIVD--K-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249 (465)
Q Consensus 173 ~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 249 (465)
.+++..+ | +......+...|.+.|++++|.+++..+.+.+..++. ....+-.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------ 229 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ------------------------ 229 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH------------------------
Confidence 9999844 3 6788999999999999999999999999987655322 2211100
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012360 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326 (465)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 326 (465)
.+|..++.......+.+...++++... +.++.....+...+...|+.++|.+++++..+. .|+.... ++.
T Consensus 230 ---~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~ 302 (398)
T PRK10747 230 ---QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLI 302 (398)
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHH
Confidence 000111111111122233333333332 235556666667777777777777777776664 4444221 223
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchHHHHHHHHHhcCChHHH
Q 012360 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 405 (465)
+....++.+++++..+...+. .+-|...+..+...+.+.|++++|.+.|+.... .|+...+..+...+.+.|+.++|
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred hhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 333457777777777777753 334555666777777777777777777776654 46666667777777777777777
Q ss_pred HHHHHHHHHh
Q 012360 406 KKVANNMMKL 415 (465)
Q Consensus 406 ~~~~~~~~~~ 415 (465)
.+++++...+
T Consensus 381 ~~~~~~~l~~ 390 (398)
T PRK10747 381 AAMRRDGLML 390 (398)
T ss_pred HHHHHHHHhh
Confidence 7777777653
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.6e-12 Score=111.17 Aligned_cols=256 Identities=13% Similarity=0.068 Sum_probs=201.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcC
Q 012360 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI--TQDAFVKTALIDMYSKCG 266 (465)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 266 (465)
..++-...+.+++..-.+.....|++.+...-+....+.....|+++|+.+|+++.+... -.|..+|+.++-.--...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 345555567888888888888888776655555555566788899999999999988731 124556665553332222
Q ss_pred CHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 267 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
++.---...-.+.+-.+.|..++..-|.-.++.++|...|++..+. .|. ...|+.+.+-|....+...|++-++.+.
T Consensus 314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 2221111122233345567777788888899999999999999987 554 4678888899999999999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 012360 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423 (465)
Q Consensus 346 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 423 (465)
+ -.+.|-..|..|.++|.-.+.+.-|+-.|++... +| |+..|.+|+.+|.+.++.++|++.|++++..+..+...+
T Consensus 392 d--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 D--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred h--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 5 3355888999999999999999999999998865 44 889999999999999999999999999999998888889
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 424 VLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 424 ~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
..|+.+|.+.++.++|..++++..+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999987765
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=7.6e-13 Score=121.84 Aligned_cols=119 Identities=10% Similarity=-0.026 Sum_probs=80.4
Q ss_pred HhCCChHHHHHHHHhh-CCCCCchh-HHHHHHHHHhcCChHHHHHHHHHhhc--CCh--HHHHHHHHHHHHcCChhHHHH
Q 012360 130 AKCKEMDEALRLFDEM-GSRRNIVS-LNILINGYIDMELVDLAREVFDEIVD--KDI--VLWRSMMHGCVKAKQPEEALE 203 (465)
Q Consensus 130 ~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~a~~ 203 (465)
...|+++.|.+.+.+. ...|+... +-.......+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|.+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3468888888888776 43454333 33334666677888888888877632 332 233334677777888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC
Q 012360 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249 (465)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 249 (465)
.++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+..
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 888888764 224556677777788888888888888888877643
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.8e-12 Score=110.97 Aligned_cols=284 Identities=13% Similarity=0.091 Sum_probs=164.0
Q ss_pred HHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCC----CchhHHHHHHHHHhcCC
Q 012360 92 SACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRR----NIVSLNILINGYIDMEL 166 (465)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~ 166 (465)
.++-.....+++..-.+.....|++.+...-+....+.-...|+++|+.+|+++ ...| |..+|+.++-.--...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344455566667766777777776666666566666666677777777777777 2233 34455544433222222
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc
Q 012360 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 167 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (465)
+.---...-.+.+-.+.|..++.+.|.-.++.++|...|+..++.+.. ....|+.+-+-|...++...|..-++..++.
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 111111111222224456666666677777777777777777664321 2344555555566666777777777777665
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012360 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323 (465)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 323 (465)
+ +.|-..|-.|.++|.-.+...-|+-+|++.. +.|...|.+|..+|.+.++.++|++.|.+....| ..+...+..
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~ 471 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVR 471 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 4 4556666667777777777766766666543 3366677777777777777777777777766654 224456666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCC---C-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 012360 324 VLAACRHSGLITEGCQLFRRMGGVY---R-VQP-TIEHFVCLVDLLSRAGLLYQAEEFIK 378 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 378 (465)
|...|-+.++..+|-+.|++..+.. | ..| ......-|..-+.+.+++++|.....
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 7777777777777766666655321 1 112 12222234445555666666554433
No 44
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.64 E-value=1.5e-12 Score=121.13 Aligned_cols=426 Identities=11% Similarity=0.025 Sum_probs=241.5
Q ss_pred chhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCCC----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 012360 4 GLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR----DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG 79 (465)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 79 (465)
.++..+...|+.|+-.+|..+|.-||..|+.+.|- +|..|.-. +...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46788999999999999999999999999999998 88887732 4456777777777777766554
Q ss_pred CCCchhhHHHHHHHhcchhhhhh---hhHHHHHHH----HhCCc-cchhh-------------HHHHHHHHHhCCChHHH
Q 012360 80 IVADKITLVILFSACARLEKLHY---GKTVHCYAT----KVGLE-YMLNM-------------ENALLLMYAKCKEMDEA 138 (465)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~-~~~~~-------------~~~l~~~~~~~g~~~~A 138 (465)
.|...||..+..+|...||+.. +.+.+.... ..|+. |.... -...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5667777788888877776554 222111111 11211 11000 11223333344555555
Q ss_pred HHHHHhhCCCCCchhHHHHHHHHHh-cCChHHHHHHHHHhhc-CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 012360 139 LRLFDEMGSRRNIVSLNILINGYID-MELVDLAREVFDEIVD-KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216 (465)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 216 (465)
++++..+++..-..+...+++-+.. ...+++-..+.+.... ++..+|.+++.+-..+|+.+.|..++.+|.+.|++.+
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 5555544211111111111222111 1122333333333333 5556666666666666666666666666666666555
Q ss_pred HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-------------------------------
Q 012360 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC------------------------------- 265 (465)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------------------- 265 (465)
.+-|-.++-+ .++...+..+++-|.+.|+.|+..|+...+..+...
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLAN 315 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhH
Confidence 5544444433 455555555555555555555555554444333332
Q ss_pred ---------------------------------------CCHHHHHHHHhcCCC-------CChhhHHHHHHHHHHcCC-
Q 012360 266 ---------------------------------------GSLEEALVTFYKTDC-------KDVVTWTTMIEGLANYGL- 298 (465)
Q Consensus 266 ---------------------------------------~~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~- 298 (465)
|+-++..++...+.. .++..|..++.-|.+.-+
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 222222222222111 123334443333332211
Q ss_pred ---------------------hHHHHHHHHHHHHCCCCCCH----------------------------HHHHHHHHHHH
Q 012360 299 ---------------------GNEALRVFYQMERKGIKPNE----------------------------ATFVSVLAACR 329 (465)
Q Consensus 299 ---------------------~~~a~~~~~~m~~~g~~p~~----------------------------~~~~~l~~~~~ 329 (465)
..+..+++... .||. ..-+.++..|+
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 11111111111 1111 11234444555
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC-----ccchHHHHHHHHHhcCChHH
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED-----KFISYKALLSACITYSEFDL 404 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~ 404 (465)
..-+..+++..-++.... -+ ...|..|++.+......+.|..+.+++.... +..-+..+.+.+.+.+....
T Consensus 471 se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~d 546 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYD 546 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHH
Confidence 555555555444444321 11 2567888999999999999999988886533 44557788888889999999
Q ss_pred HHHHHHHHHHhC---CCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCC
Q 012360 405 GKKVANNMMKLG---NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRK 453 (465)
Q Consensus 405 a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 453 (465)
+..+++++.+.- |.....+..+.+.....|+.+.-.+..+-+...|+..
T Consensus 547 l~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 547 LSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 999999998732 5556677888888889999999999888888888766
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=1e-12 Score=120.99 Aligned_cols=280 Identities=11% Similarity=0.022 Sum_probs=204.2
Q ss_pred HhcCChHHHHHHHHHhhc--CC-hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhccchhhHhH
Q 012360 162 IDMELVDLAREVFDEIVD--KD-IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE--VMVSVLSACSSLSNLQYG 236 (465)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a 236 (465)
...|+++.|.+.+.+..+ |+ ...+-....+....|+.+.|.+.+.+..+.. |+.. .-......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 367999999999988754 33 3344455677888999999999999988753 4432 333456778889999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhhHHH----HHHHHHHcCChHHHHHHHHHH
Q 012360 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK---DVVTWTT----MIEGLANYGLGNEALRVFYQM 309 (465)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~----l~~~~~~~~~~~~a~~~~~~m 309 (465)
...++.+.+.. +-++.+...+...+...|++++|.+.+....+. +...+.. ........+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999986 556778899999999999999999999877632 3332321 111223333333334455555
Q ss_pred HHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhh-HHHHHHH--HHhcCCHHHHHHHHHhCCC-
Q 012360 310 ERKGI---KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH-FVCLVDL--LSRAGLLYQAEEFIKIMPA- 382 (465)
Q Consensus 310 ~~~g~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~g~~~~A~~~~~~~~~- 382 (465)
.+... +.+...+..+...+...|+.++|.+.+++..+. .|+... ...++.. ....++.+.+.+.++....
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 54411 126778888899999999999999999999964 343331 1012222 2345778888888877644
Q ss_pred CC-cc--chHHHHHHHHHhcCChHHHHHHHH--HHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 383 ED-KF--ISYKALLSACITYSEFDLGKKVAN--NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 383 ~~-~~--~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.| ++ ....++++.+.+.|++++|.+.|+ .+.+..|++.. +..++..+.+.|+.++|.+++++...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 45 567799999999999999999999 46667787766 77999999999999999999997643
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=4.1e-15 Score=130.13 Aligned_cols=253 Identities=14% Similarity=0.133 Sum_probs=69.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhh-HHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCC
Q 012360 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKIT-LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134 (465)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 134 (465)
...+.+.|++++|++++++......+|+... |..+...+...++.+.|.+.++.+...+. .+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 4444555555555555543322211222222 22233333445555555555555554432 233344444444 45555
Q ss_pred hHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhh-----cCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012360 135 MDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVFDEIV-----DKDIVLWRSMMHGCVKAKQPEEALELFKKM 208 (465)
Q Consensus 135 ~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 208 (465)
+++|.++++.. ...++...+..++..+.+.++++++.++++.+. +.+...|..+...+.+.|+.++|++.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555443 222333334444444444445544444444431 124455555556666666666666666666
Q ss_pred HHcCCCC-CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHH
Q 012360 209 IDEGVTP-DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287 (465)
Q Consensus 209 ~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 287 (465)
++. .| |......++..+...|+.+++..+++...+.. + .|+..+.
T Consensus 173 l~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~-------------------------------~~~~~~~ 218 (280)
T PF13429_consen 173 LEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-P-------------------------------DDPDLWD 218 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H-------------------------------TSCCHCH
T ss_pred HHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c-------------------------------CHHHHHH
Confidence 553 23 34445555555555666655555555554432 2 2344445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 288 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
.+..++...|++++|..+|++..+.. +.|+.....+..++...|+.++|.++.+++.
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 55555566666666666666665541 2245555666666666666666666666554
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.4e-13 Score=124.21 Aligned_cols=276 Identities=9% Similarity=-0.004 Sum_probs=218.6
Q ss_pred ChHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHhccchhhHhHHHHH
Q 012360 166 LVDLAREVFDEIVDK---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG--VTPDEEVMVSVLSACSSLSNLQYGRLVH 240 (465)
Q Consensus 166 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (465)
+..+|...|..++.. +..+...+..+|...+++++|.++|+.+.+.. ..-+...|.+.+..+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886432 44667778899999999999999999998742 122567888888765322 122222
Q ss_pred -HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 012360 241 -RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK---DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316 (465)
Q Consensus 241 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 316 (465)
+.+.+. -+..+.+|.++..+|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.. .|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 233332 3567889999999999999999999999997754 4578888999999999999999999987744 44
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHH
Q 012360 317 N-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALL 393 (465)
Q Consensus 317 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~ 393 (465)
. ...|..+...|.+.++++.|+-.|+++.+. -+.+......+...+.+.|+.++|+++++++.. ..|+..--..+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 3 346777889999999999999999999953 233666777888899999999999999998754 33666666667
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 394 SACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
..+...+++++|+..++++.+.-|++..++..++..|.+.|+.+.|+.-|--+.+.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 778889999999999999999999999999999999999999999998877554443
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.6e-13 Score=123.98 Aligned_cols=278 Identities=14% Similarity=0.086 Sum_probs=211.6
Q ss_pred ChHHHHHHHHhh-CCCCCch-hHHHHHHHHHhcCChHHHHHHHHHhhcC------ChHHHHHHHHHHHHcCChhHHHHHH
Q 012360 134 EMDEALRLFDEM-GSRRNIV-SLNILINGYIDMELVDLAREVFDEIVDK------DIVLWRSMMHGCVKAKQPEEALELF 205 (465)
Q Consensus 134 ~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 205 (465)
+..+|...|..+ ...+++. ....+..+|...+++++|+++|+.+.+. +...|.+.+..+-+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 456777777776 2334443 3445677888888888888888877442 566777777654332 122222
Q ss_pred -HHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh
Q 012360 206 -KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284 (465)
Q Consensus 206 -~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 284 (465)
+.+.+. -+-...+|.++-.+|+-+++.+.|++.|++..+.. +....+|+.+.+-+.....++.|...|+.....|+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 223332 23356788889889999999999999999888864 336788888888888899999999999998887777
Q ss_pred hHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH
Q 012360 285 TWTT---MIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360 (465)
Q Consensus 285 ~~~~---l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 360 (465)
.|++ +...|.+.++++.|+-.|++..+- .| +.+....+...+.+.|+.++|+++++++..- -+.++..-..-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHH
Confidence 6666 567799999999999999998876 55 4566777888889999999999999999842 23355555566
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+..+...+++++|...++++.. ..+...+..++..|.+.|+.+.|+.-|.-|.+++|....
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 7778899999999999999865 446777889999999999999999999999999987554
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1e-11 Score=108.24 Aligned_cols=386 Identities=12% Similarity=0.010 Sum_probs=249.2
Q ss_pred hHHHHHHHccCChHHHHHHhccCC--CCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh-hHHHHHHHhcch
Q 012360 22 NSLIHFYGRMALFTDARVLFDKMP--FRD-VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKI-TLVILFSACARL 97 (465)
Q Consensus 22 ~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~ 97 (465)
...-+-|-++|.+++|++.+.+.. .|+ ...|.....+|...|++++..+--...++. .|+-. .+..-.+++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 334456777899999999999887 566 778899999999999999988877777663 45533 333334455556
Q ss_pred hhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHh--hCCCCCchhHHHHHHHHH-------------
Q 012360 98 EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE--MGSRRNIVSLNILINGYI------------- 162 (465)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~l~~~~~------------- 162 (465)
|++++|+.=..-..-.+--.+..+- .++.-..+.--...+.+-+.. -.+-|+.....+....+.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~-~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIE-PMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhH-HHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 6666654322111111100111100 000000000001111111110 011122221122221111
Q ss_pred ------------hcC---ChHHHHHHHHHhh-----cC--C---------hHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 012360 163 ------------DME---LVDLAREVFDEIV-----DK--D---------IVLWRSMMHGCVKAKQPEEALELFKKMIDE 211 (465)
Q Consensus 163 ------------~~~---~~~~a~~~~~~~~-----~~--~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 211 (465)
..+ .+..|.+.+.+-. .+ + ..+.......+.-.|+.-.|..-|+..++.
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 011 2333333332220 01 1 112222222345578889999999999886
Q ss_pred CCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHH
Q 012360 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTT 288 (465)
Q Consensus 212 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 288 (465)
...++. .|.-+...|....+.++....|....+.+ +.++.+|..-.+.+.-.+++++|..-|++... .++..|-.
T Consensus 356 ~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 356 DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 544333 27777778999999999999999999876 45677888888888889999999999998764 35667777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---------hhhHHH
Q 012360 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT---------IEHFVC 359 (465)
Q Consensus 289 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~ 359 (465)
+..+..+.+++++++..|++.+++ ++-.+..|+.....+...++++.|.+.|+.+..- .|+ +.+...
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---ccccccccccchhhhhhh
Confidence 777888899999999999999887 3334689999999999999999999999998742 333 222333
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 360 LVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
++-.- -.+++..|..++++..+ .| ....|.+|.....+.|+.++|+++|++...+-.
T Consensus 510 ~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 510 LLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred Hhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33322 34899999999998865 33 667899999999999999999999999887653
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.3e-11 Score=108.00 Aligned_cols=420 Identities=11% Similarity=0.033 Sum_probs=288.3
Q ss_pred hhhhHHHHHHHccCChHHHHHHhccCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc
Q 012360 19 YVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96 (465)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 96 (465)
.-+..+++-+..+.++..|.-+-+++- ..|+..--.+.+++.-.|+++.|..++..-.-. ..|..+.......+.+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVK 94 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHH
Confidence 334444554555566666666666554 334445556777777778888877777654332 3466677777777788
Q ss_pred hhhhhhhhHHHHHH----HHhC---------Cccchhh-----------HHHHHHHHHhCCChHHHHHHHHhhCCCCCch
Q 012360 97 LEKLHYGKTVHCYA----TKVG---------LEYMLNM-----------ENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152 (465)
Q Consensus 97 ~~~~~~a~~~~~~~----~~~~---------~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 152 (465)
..++++|..++... .... +.+|..- +-.-...|.....+++|...|.+.- ..|..
T Consensus 95 lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al-~~D~~ 173 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL-LADAK 173 (611)
T ss_pred HHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH-hcchh
Confidence 88888888777622 1100 0111111 0001123444456677777766651 22322
Q ss_pred hHHH---HHHHHHh-----------------cC-ChHHHHHHHHHh--------------------hcCChHHHHHHHHH
Q 012360 153 SLNI---LINGYID-----------------ME-LVDLAREVFDEI--------------------VDKDIVLWRSMMHG 191 (465)
Q Consensus 153 ~~~~---l~~~~~~-----------------~~-~~~~a~~~~~~~--------------------~~~~~~~~~~l~~~ 191 (465)
.+.. ++....- .+ +.+.-..+|+-. ...+.........-
T Consensus 174 c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~ 253 (611)
T KOG1173|consen 174 CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADR 253 (611)
T ss_pred hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHH
Confidence 2222 2211110 01 111112222211 01134445555666
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012360 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271 (465)
Q Consensus 192 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 271 (465)
+...+++.+..++.+...+. .++....+..-|..+...|+..+-..+-..+++.- |..+.+|-++...|...|++++|
T Consensus 254 ~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHH
Confidence 77889999999999999876 35566666666778888888888888888888763 56678999999999999999999
Q ss_pred HHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 012360 272 LVTFYKTDCKD---VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGV 347 (465)
Q Consensus 272 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (465)
.++|.+...-| ...|-.....|.-.+..++|+..+...-+. .| ....+..+..-|.+.++.+.|.++|.++..
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a- 408 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA- 408 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh-
Confidence 99998865433 458999999999999999999999887664 22 222334455668889999999999999984
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--------ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 348 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
-.|.|+...+.+.-.....+.+.+|..+|+.... .+ -..+++.|+.+|.+.+.+++|+..+++++.+.|.
T Consensus 409 -i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 409 -IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred -cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 2344677778888778888999999999987542 11 2356889999999999999999999999999999
Q ss_pred CchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 419 SHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 419 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
++.++..++-.|...|+++.|.+.|.+..
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999998653
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.5e-11 Score=101.76 Aligned_cols=279 Identities=14% Similarity=0.119 Sum_probs=183.4
Q ss_pred CCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc-CCh------HHHHHHHHHHHHcCChhHHH
Q 012360 132 CKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD-KDI------VLWRSMMHGCVKAKQPEEAL 202 (465)
Q Consensus 132 ~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~------~~~~~l~~~~~~~g~~~~a~ 202 (465)
..+.++|.++|-+| ..+.+..+.-+|.+.|.+.|..+.|+.+-..+.+ ||. .....|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 35666666666666 2222334455666666677777777777666633 322 23445666778888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 012360 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD----AFVKTALIDMYSKCGSLEEALVTFYKT 278 (465)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 278 (465)
.+|..+.+.+ ..-......++..|-...+|++|+++-+++.+.+..+. ...|..+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 8888877653 22345667777888888888888888887777654332 234556666666677888888888776
Q ss_pred CCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChh
Q 012360 279 DCK---DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355 (465)
Q Consensus 279 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 355 (465)
.+. .+..--.+...+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++....+.++.+. .+...
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCcc
Confidence 543 334445566778888888888888888888733333456777888888888888888888888754 34444
Q ss_pred hHHHHHHHHHhcCCHHHHHH-HHHhCCCCCccchHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 012360 356 HFVCLVDLLSRAGLLYQAEE-FIKIMPAEDKFISYKALLSACIT---YSEFDLGKKVANNMMK 414 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 414 (465)
.-..+.+.-....-.+.|.. +.+.+..+|+...+..++..... .|...+....++.|+.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44555555555555555555 44556678888888877776543 3345566666666665
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=2e-11 Score=100.91 Aligned_cols=262 Identities=14% Similarity=0.153 Sum_probs=147.9
Q ss_pred hhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCch------hHHHHHHHHHhcCChHHHH
Q 012360 98 EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV------SLNILINGYIDMELVDLAR 171 (465)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~ 171 (465)
++.++|.+.|-+|.+.. +.+..+.-+|.+.|.+.|..|.|+++.+.+-..||.. +...|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44455555555555422 2233334455555555666666666655553344432 2234445556666666666
Q ss_pred HHHHHhhcC---ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhccchhhHhHHHHHHHHH
Q 012360 172 EVFDEIVDK---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE----EVMVSVLSACSSLSNLQYGRLVHRFIL 244 (465)
Q Consensus 172 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~ 244 (465)
.+|..+.+. -......|+..|-...+|++|++.-+++.+.+.++.. ..|.-+...+....+++.|...++...
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 666666542 2234555666677777777777777766665444332 234445555555666677777777666
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh----hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 012360 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV----TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320 (465)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 320 (465)
+.+ +..+..-..+.+.+...|+++.|.+.++.+.+.|+. +...|..+|.+.|+.++....+.++.+. .+....
T Consensus 208 qa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~ 284 (389)
T COG2956 208 QAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADA 284 (389)
T ss_pred hhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccH
Confidence 654 223334445566666777777777777776655443 4555667777777777777777777766 333333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (465)
-..+...-....-.+.|...+.+-..+ +|+...+..|++....
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhc
Confidence 333444334444455555544444422 5777777777766544
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=3.2e-11 Score=102.77 Aligned_cols=284 Identities=12% Similarity=0.082 Sum_probs=139.2
Q ss_pred CCChHHHHHHHHhhCCCCC--chhHHHHHHHHHhcCChHHHHHHHHHhhcC----ChHHHHHHHHHHHHcCChhHHHHHH
Q 012360 132 CKEMDEALRLFDEMGSRRN--IVSLNILINGYIDMELVDLAREVFDEIVDK----DIVLWRSMMHGCVKAKQPEEALELF 205 (465)
Q Consensus 132 ~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~ 205 (465)
.|++.+|++...+-....+ ...|..-..+.-+.|+.+.+-.++.+.-++ +....-+........|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5777777777766521222 223333345555666777777776666332 3344555555666667777777766
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhh
Q 012360 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285 (465)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 285 (465)
+++.+.+.. +.........+|.+.|++.....++..+.+.+.-.+...-.. -..+
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l------------------------e~~a 231 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL------------------------EQQA 231 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH------------------------HHHH
Confidence 666665433 345556666667777777777777777666654433321100 0113
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
|..++.-....+..+.-...|+....+ .+.++..-..++.-+.+.|+.++|.++.++..+. +..|+ ...++ .+.
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l 305 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRL 305 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhc
Confidence 333333333333333333344433222 1223333344444455555555555555555433 33333 11111 122
Q ss_pred hcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 012360 366 RAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 443 (465)
+-++...-.+..+.... +.++..+.+|+..|.+.+.+.+|.+.|+.+++..|+..+ |..++.++.+.|+..+|....
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCChHHHHHHH
Confidence 33333333332222211 113344555555555555555555555555555554444 555555555555555555555
Q ss_pred HHHH
Q 012360 444 RNMK 447 (465)
Q Consensus 444 ~~~~ 447 (465)
++..
T Consensus 385 ~e~L 388 (400)
T COG3071 385 REAL 388 (400)
T ss_pred HHHH
Confidence 5444
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=9.2e-11 Score=100.08 Aligned_cols=284 Identities=13% Similarity=0.046 Sum_probs=203.2
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CC--CCCchhHHHHHHHHHhcCChHHHHHH
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GS--RRNIVSLNILINGYIDMELVDLAREV 173 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 173 (465)
.|++..|++......+.+-.| ...|..-..+.-..||.+.+-.++.+. .. .++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 599999999999988877333 344556677778899999999999999 33 34445567777889999999999988
Q ss_pred HHHhh---cCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCC
Q 012360 174 FDEIV---DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250 (465)
Q Consensus 174 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 250 (465)
++.+. ..+.........+|.+.|++.....++.++.+.|.-.+...-..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 87763 35788899999999999999999999999999987655432110
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012360 251 DAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327 (465)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 327 (465)
...++..+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++..+..+++..|+ -...-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 01122223333333333333333444433 23455666667777788888888888888877766655 122234
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchHHHHHHHHHhcCChHHHH
Q 012360 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 406 (465)
+.+.++...-++..++-.+.++. ++..+..|...|.+.+.+.+|...|+.... .|+..+|+-+..++.+.|+..+|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 55677777777777777764433 346777888888888888888888886544 678888888888888888888888
Q ss_pred HHHHHHHHh
Q 012360 407 KVANNMMKL 415 (465)
Q Consensus 407 ~~~~~~~~~ 415 (465)
++.++....
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 888887753
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.53 E-value=3.5e-12 Score=108.91 Aligned_cols=198 Identities=14% Similarity=0.041 Sum_probs=162.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012360 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327 (465)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 327 (465)
....+..+...+...|++++|.+.+++... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355677788888889999999988886542 345677888889999999999999999988763 3345677788889
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHH
Q 012360 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a 405 (465)
+...|++++|...++++......+.....+..+...+...|++++|...+++... .| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999986422233455677788899999999999999988654 33 566788889999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888889999999999999999998877543
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.52 E-value=9.6e-12 Score=113.47 Aligned_cols=238 Identities=17% Similarity=0.170 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc-----CC-CCCHHHH-HHHHHHhccchhhHhHHHHHHHHHHc-----C--CC
Q 012360 184 LWRSMMHGCVKAKQPEEALELFKKMIDE-----GV-TPDEEVM-VSVLSACSSLSNLQYGRLVHRFILQN-----N--IT 249 (465)
Q Consensus 184 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 249 (465)
+...+...|...|+++.|..+++..++. |. .|...+. +.+...|...+++.+|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444666777777777777777666543 10 1222111 22334455555555555555554431 1 01
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH-HHHHHHHHH
Q 012360 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNE-ATFVSVLAA 327 (465)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~-~~~~~l~~~ 327 (465)
.-..+++.|..+|.+.|++++|..++ +.|.+++++ ..|. .|.. ..++.+...
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~------------------------e~Al~I~~~--~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYC------------------------ERALEIYEK--LLGASHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHH------------------------HHHHHHHHH--hhccChHHHHHHHHHHHHH
Confidence 11223334444444444444444332 223333333 1122 2222 345667778
Q ss_pred HHhcCCHHHHHHHHHHhhcCCC--CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-------CC---ccchHHH
Q 012360 328 CRHSGLITEGCQLFRRMGGVYR--VQP----TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-------ED---KFISYKA 391 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~---~~~~~~~ 391 (465)
|+..+++++|..++++..+... +.+ ...+++.|...|...|++++|.++++++.. .. ....++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 8888999999888887654322 112 246788999999999999999999987643 11 2345788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----hCCCC---chhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 392 LLSACITYSEFDLGKKVANNMMK----LGNQS---HEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~----~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+...|.+.+++.+|.++|.+... .+|++ ..+|..|+.+|.+.|++++|.++.+...
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88899999999999999988765 45554 4478999999999999999999988765
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=4.6e-09 Score=95.26 Aligned_cols=425 Identities=11% Similarity=0.015 Sum_probs=251.0
Q ss_pred ccCCcchhhhHHHHHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHH
Q 012360 13 ALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89 (465)
Q Consensus 13 g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 89 (465)
+.+--..+....--.+...|+-++|.......... +.++|+++.-.+....++++|+..|.....-+ +-|...+..
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrD 114 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRD 114 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 34444455555555566678888888887766543 45678888888888889999999999887753 334456666
Q ss_pred HHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh----CCCCCchhHHHHH------H
Q 012360 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM----GSRRNIVSLNILI------N 159 (465)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~------~ 159 (465)
+--.-++.|+++..........+.. +.....|..++.++.-.|+...|..+++.. ...|+...+.... .
T Consensus 115 lslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~ 193 (700)
T KOG1156|consen 115 LSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ 193 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 6555567788888777777776653 233445677777777888999999888887 2235555554332 3
Q ss_pred HHHhcCChHHHHHHHHHhhcC--C-hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-cchhhHh
Q 012360 160 GYIDMELVDLAREVFDEIVDK--D-IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS-SLSNLQY 235 (465)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~ 235 (465)
...+.|..++|.+.+...... | ...-..-...+.+.++.++|..++..++.. .||...|...+..+. +..+..+
T Consensus 194 i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 194 ILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHH
Confidence 345677888888777665432 2 223344556678888999999999988885 567766665554443 2333333
Q ss_pred HH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH-HHHHhcCCCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-
Q 012360 236 GR-LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA-LVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQMER- 311 (465)
Q Consensus 236 a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~- 311 (465)
+. .+|....+.- |.......+--......++... -.++....+. -+..+..+...|-.....+-..++...+..
T Consensus 272 ~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~ 349 (700)
T KOG1156|consen 272 ALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHS 349 (700)
T ss_pred HHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhh
Confidence 33 5555544431 1111111111111111222222 2222222222 223444444444332222211111111111
Q ss_pred ---CC----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcCCHHHHHH
Q 012360 312 ---KG----------IKPNE--ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAGLLYQAEE 375 (465)
Q Consensus 312 ---~g----------~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 375 (465)
.| -+|.. .++..++..+-+.|+++.|..+++.+.. ..|+ +..|..-.+.+...|++++|..
T Consensus 350 L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~ 426 (700)
T KOG1156|consen 350 LSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAA 426 (700)
T ss_pred cccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHH
Confidence 11 03443 3455666778888889999888888884 2454 4556566678888888999888
Q ss_pred HHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-------hhHHHH--HHHHhhcCChHHHHHHHH
Q 012360 376 FIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH-------EAYVLL--SNFYALEGHWTEVAEARR 444 (465)
Q Consensus 376 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l--~~~~~~~g~~~~a~~~~~ 444 (465)
++++... .+|...-..-+.-..++++.++|.++.....+.+-.-. -.|..+ +.+|.++|++..|++=+.
T Consensus 427 ~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 427 WLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 8888765 33443333555566678888888888887766543111 123333 567888888877776555
Q ss_pred HH
Q 012360 445 NM 446 (465)
Q Consensus 445 ~~ 446 (465)
.+
T Consensus 507 ~i 508 (700)
T KOG1156|consen 507 EI 508 (700)
T ss_pred hH
Confidence 44
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=2.6e-11 Score=113.10 Aligned_cols=91 Identities=10% Similarity=0.084 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCC
Q 012360 70 ILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149 (465)
Q Consensus 70 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 149 (465)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-...+.+...++.++......++.+.+. .|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------CC
Confidence 45667788889999999999999999999998888 8888888777888888888888888888877765 67
Q ss_pred CchhHHHHHHHHHhcCChHH
Q 012360 150 NIVSLNILINGYIDMELVDL 169 (465)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~ 169 (465)
...+|..|..+|...|++..
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred chhHHHHHHHHHHhccchHH
Confidence 78889999999998888655
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.45 E-value=1.6e-09 Score=100.07 Aligned_cols=425 Identities=14% Similarity=0.097 Sum_probs=245.3
Q ss_pred HHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch-
Q 012360 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADK- 84 (465)
Q Consensus 9 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~- 84 (465)
+....+..++.+|..|.-++...|+++.+-+.|++...- ....|+.+...+...|.-..|+.+++.-....-.|+.
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 344446678888888888888889999888888876633 4457888888888888888888888876544322433
Q ss_pred hhHHHHHHHhc-chhhhhhhhHHHHHHHHhC--C--ccchhhHHHHHHHHHhC-----------CChHHHHHHHHhh-CC
Q 012360 85 ITLVILFSACA-RLEKLHYGKTVHCYATKVG--L--EYMLNMENALLLMYAKC-----------KEMDEALRLFDEM-GS 147 (465)
Q Consensus 85 ~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~ 147 (465)
..+-..-..|. +.+..+++..+-.++.... . ......+..+.-+|... ....++++.+++. ..
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 33333334443 4466666666666655521 1 11222333333333321 1123444445444 11
Q ss_pred CC-CchhHHHHHHHHHhcCChHHHHHHHHHhhc----CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 012360 148 RR-NIVSLNILINGYIDMELVDLAREVFDEIVD----KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS 222 (465)
Q Consensus 148 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (465)
.| |..+...+.--|+..++++.|.+..++... -+...|..+.-.+...+++.+|+.+.+...+. ..-|......
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~ 552 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDG 552 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchh
Confidence 11 222222233344555566666655555422 24555666666666666666666666555432 1111111112
Q ss_pred HHHHhccchhhHhHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CC-C-hhhHHHHHHHHHH
Q 012360 223 VLSACSSLSNLQYGRLVHRFILQNN-ITQDAFVKTALIDMYSKCGSLEEALVTFYKTD----CK-D-VVTWTTMIEGLAN 295 (465)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~-~-~~~~~~l~~~~~~ 295 (465)
-+..-..-++.+++......+...= -.+.. ...++-...++....+. ++ + +.++..+......
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~----------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGV----------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhH----------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 2222233444555544444433210 00000 00111122222222221 11 1 2233322222211
Q ss_pred cCChHHHHHHHHHHHHCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc
Q 012360 296 YGLGNEALRVFYQMERKGIKP--N------EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~p--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (465)
. ...+..-.. +....+.| + ...+......+.+.++.++|...+.++.. ..+.....|......+...
T Consensus 623 ~--~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 623 Q--LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVK 697 (799)
T ss_pred h--hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHH
Confidence 1 111110000 22222222 2 12344556778888999999988888875 4455677788888889999
Q ss_pred CCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHH--HHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 012360 368 GLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKK--VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 368 g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 443 (465)
|+.++|.+.|..... +| ++.+..++...+.+.|+...|.. ++..+++.+|.++..|..++..+.+.|+.++|-+.|
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 999999998877644 44 78889999999999999888888 999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 012360 444 RNMKEL 449 (465)
Q Consensus 444 ~~~~~~ 449 (465)
+...+.
T Consensus 778 ~aa~qL 783 (799)
T KOG4162|consen 778 QAALQL 783 (799)
T ss_pred HHHHhh
Confidence 977654
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=8.2e-09 Score=93.53 Aligned_cols=114 Identities=9% Similarity=0.085 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHhhcCCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHhCCCCC----ccchHHHHHHHHHhcCChHHH
Q 012360 332 GLITEGCQLFRRMGGVYRVQPTIE--HFVCLVDLLSRAGLLYQAEEFIKIMPAED----KFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a 405 (465)
..++.|..+|+++.+ +.+|... .|......=-+-|-...|+.++++....- ....|+..|.-....=-....
T Consensus 564 ~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~T 641 (835)
T KOG2047|consen 564 TKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRT 641 (835)
T ss_pred CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 357778888888875 5655322 11122222234566777777777764321 223455555443333233445
Q ss_pred HHHHHHHHHhCCCCch--hHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 406 KKVANNMMKLGNQSHE--AYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
..+|+++++.-|++.. .....+..-.+.|..+.|+.++.-..
T Consensus 642 R~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 642 REIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 5666666666555433 22334455556677777777666443
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=1.3e-08 Score=85.73 Aligned_cols=415 Identities=13% Similarity=0.042 Sum_probs=227.1
Q ss_pred HHHHHccCChHHHHHHhccCCCC---C-cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhh
Q 012360 25 IHFYGRMALFTDARVLFDKMPFR---D-VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKL 100 (465)
Q Consensus 25 ~~~~~~~~~~~~A~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (465)
+.-+....++..|+.+++--... . ..+--.+..++.+.|++++|+..|.-+.... .|+...+..+.-+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44555678889999888765421 1 1233446667788999999999999887754 56666665665555567888
Q ss_pred hhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcC
Q 012360 101 HYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180 (465)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (465)
.+|..+..... .+.-.-..++....+.++-++-..+-+.++ ....--.++.+.....-.+++|++++.++...
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~Lq--D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQ--DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHh--hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88877755432 222223344555566777777666666662 22233444555555566788889988888553
Q ss_pred --ChHHHHH-HHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcc--chhhHhH------------HHHHHH
Q 012360 181 --DIVLWRS-MMHGCVKAKQPEEALELFKKMIDEGVTPDE-EVMVSVLSACSS--LSNLQYG------------RLVHRF 242 (465)
Q Consensus 181 --~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~--~~~~~~a------------~~~~~~ 242 (465)
+....|. +.-+|.+..-++-+.++++..++. -||+ ...+.......+ .|+..+. ....+.
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~ 258 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY 258 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence 3334443 344567777777777777776664 2332 223322222221 1111110 001111
Q ss_pred HHHcCC-----------------CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC-------
Q 012360 243 ILQNNI-----------------TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL------- 298 (465)
Q Consensus 243 ~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 298 (465)
+.+++. ..-+..-..++-.|.+.+++++|..+.++..+.++.-|-.-.-.++..|+
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 111110 00122334456667888999999999988876655544333333333332
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 012360 299 GNEALRVFYQMERKGIKPNE-ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI 377 (465)
Q Consensus 299 ~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 377 (465)
..-|...|+-.-+.+..-|. .--.++..++.-..++++++.++..+..- +..|...-..+..+++..|.+.+|+++|
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY--F~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY--FTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 33445555444334333332 12233444555555666776666666531 2222222235666777777777777777
Q ss_pred HhCCCC--CccchHH-HHHHHHHhcCChHHHHHHHHHHHHhC-CCCch-hHHHHHHHHhhcCChHHHHHHHHHHHHhcCC
Q 012360 378 KIMPAE--DKFISYK-ALLSACITYSEFDLGKKVANNMMKLG-NQSHE-AYVLLSNFYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 378 ~~~~~~--~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
-.+... .|..+|. .|.++|.+.++++.|..++ ++.+ |.+.. ....++.-|.+.+.+=-|-+.|+.+...+..
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 666542 2344443 3445666677766654443 3333 32222 2334456666666666666666666554443
Q ss_pred CC
Q 012360 453 KK 454 (465)
Q Consensus 453 ~~ 454 (465)
|.
T Consensus 494 pE 495 (557)
T KOG3785|consen 494 PE 495 (557)
T ss_pred cc
Confidence 33
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=9e-12 Score=103.09 Aligned_cols=226 Identities=13% Similarity=0.057 Sum_probs=127.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 012360 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265 (465)
Q Consensus 186 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (465)
+.+..+|.+.|.+.+|.+.++..++. .|-..||..+-.+|.+..+++.|..++.+-++. ++.++....-+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777766664 444556666666677777777777666666554 233333333444444444
Q ss_pred CCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
++.++|.+++ +...+.. ..+......+...|.-.++++-|+.+|+++.
T Consensus 304 ~~~~~a~~lY-------------------------------k~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 304 EQQEDALQLY-------------------------------KLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred HhHHHHHHHH-------------------------------HHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 5555555544 4444331 1122333334444444444444444444444
Q ss_pred cCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC---CC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 012360 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA---ED--KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 346 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
+- |+ .++..|+.+.-+|.-.+++|-++.-|++... +| -..+|..+.......||+..|.+.|+-++..+|++.
T Consensus 352 qm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 352 QM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred Hh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 32 22 2334444444444444445444444443322 12 234566666666667777777777777777777777
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 421 EAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 421 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
..++.|+..-.+.|++++|+.+++...+
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 7777777777777777777777776544
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.2e-08 Score=91.69 Aligned_cols=404 Identities=11% Similarity=0.053 Sum_probs=214.4
Q ss_pred HHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHh--cchh
Q 012360 24 LIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSAC--ARLE 98 (465)
Q Consensus 24 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~--~~~~ 98 (465)
=++.+...|++++|.+....+. +.+...+.+-+-++.+.+++++|+.+.+.-... ..+..-+ +=.+| .+.+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrln 93 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRLN 93 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHcc
Confidence 3566667778888887777665 335566777777777788888877554432110 0011110 12333 3566
Q ss_pred hhhhhhHHHHHHHHhCCcc-chhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCC-------------------------
Q 012360 99 KLHYGKTVHCYATKVGLEY-MLNMENALLLMYAKCKEMDEALRLFDEM--GSRRN------------------------- 150 (465)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~------------------------- 150 (465)
..++|...++ |..+ +..+...-...+.+.|++++|..+|+.+ ...++
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 6777766665 2222 2224444455666777777777777766 10111
Q ss_pred ---chhHHHHH---HHHHhcCChHHHHHHHHHhhc--------CCh----------HHHHHHHHHHHHcCChhHHHHHHH
Q 012360 151 ---IVSLNILI---NGYIDMELVDLAREVFDEIVD--------KDI----------VLWRSMMHGCVKAKQPEEALELFK 206 (465)
Q Consensus 151 ---~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~--------~~~----------~~~~~l~~~~~~~g~~~~a~~~~~ 206 (465)
..+|..+- ..++..|++.+|+++++...+ .|. ..--.+...+...|+.++|..+|.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 11233222 223345666666666655411 000 011223334455566666666666
Q ss_pred HHHHcCCCCCHHHH----HHHHHHhccchh-hH-hHHHHHHHHHHcC-------C--CCChhHHHHHHHHHHhcCCHHHH
Q 012360 207 KMIDEGVTPDEEVM----VSVLSACSSLSN-LQ-YGRLVHRFILQNN-------I--TQDAFVKTALIDMYSKCGSLEEA 271 (465)
Q Consensus 207 ~~~~~~~~~~~~~~----~~ll~~~~~~~~-~~-~a~~~~~~~~~~~-------~--~~~~~~~~~l~~~~~~~~~~~~a 271 (465)
..++.. .+|.... |.++. .....+ ++ .+...++...... + .--..++....-.....+.-+.+
T Consensus 249 ~~i~~~-~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~ 326 (652)
T KOG2376|consen 249 DIIKRN-PADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV 326 (652)
T ss_pred HHHHhc-CCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 655543 2232221 11111 111111 11 0011111100000 0 00001111111111122334444
Q ss_pred HHHHhcCCCCC-hhhHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH----
Q 012360 272 LVTFYKTDCKD-VVTWTTMIEGLA--NYGLGNEALRVFYQMERKGIKPNE--ATFVSVLAACRHSGLITEGCQLFR---- 342 (465)
Q Consensus 272 ~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~---- 342 (465)
.++........ ...+.+++.... +...+..+.+++...-+. .|.. ......+......|+++.|++++.
T Consensus 327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 44444444322 234444444332 233577788888877665 4443 344555677788999999999999
Q ss_pred ----HhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-ccchHHHHHHHHHhcCChHHHHHHH
Q 012360 343 ----RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--------ED-KFISYKALLSACITYSEFDLGKKVA 409 (465)
Q Consensus 343 ----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 409 (465)
.+.+ +...+.+...++..+.+.++.+.|..++.+... .+ -..++..+...-.+.|+-++|..++
T Consensus 405 ~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 405 SWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 4442 233455667788888888887777777765432 11 1223444455556789999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 012360 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 410 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
+++++.+|++..+...++.+|.+. +.+.|..+-+
T Consensus 482 eel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 482 EELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 999999999999999999999876 4566666544
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=2e-10 Score=109.95 Aligned_cols=256 Identities=13% Similarity=0.026 Sum_probs=180.3
Q ss_pred ChHHHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhc---------cchhhHhHHHHHHHHHH
Q 012360 181 DIVLWRSMMHGCVK-----AKQPEEALELFKKMIDEGVTPDE-EVMVSVLSACS---------SLSNLQYGRLVHRFILQ 245 (465)
Q Consensus 181 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 245 (465)
+...|...+.+-.. .+.+++|...|++..+. .|+. ..+..+..++. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555554322 23467899999998874 4543 34444433322 34568899999999988
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHH
Q 012360 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--K-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE-ATF 321 (465)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~ 321 (465)
.. +.+...+..+...+...|++++|...|++..+ | +...+..+...+...|++++|...+++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 75 45677888888889999999999999988653 3 4567888889999999999999999999887 4543 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc-cchHHHHHHHHHh
Q 012360 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK-FISYKALLSACIT 398 (465)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~ 398 (465)
..++..+...|++++|+..++++... .+| +...+..+..++...|++++|...++++.. .|+ ....+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34455566789999999999998753 234 455567788889999999999999988754 333 3345556666666
Q ss_pred cCChHHHHHHHHHHHHh---CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 399 YSEFDLGKKVANNMMKL---GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.| +.|...++++.+. +|.++. .+...+.-.|+.+.+..+ +++.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 66 4777777777663 355544 266666667777777666 766544
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.1e-08 Score=87.88 Aligned_cols=396 Identities=8% Similarity=-0.047 Sum_probs=241.8
Q ss_pred hhhhHHHHHHHccCChHHHHHHhccCCCCCc-ccHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc
Q 012360 19 YVGNSLIHFYGRMALFTDARVLFDKMPFRDV-GSWNTLMSIYNDFS-DSGEVLILFKQLIFEGIVADKITLVILFSACAR 96 (465)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 96 (465)
..--..+..|...++-+.|......+++.-. ..-|.++.-+.+.| +..++.--+......- +.- ...|.+..+
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p~a----L~~i~~ll~ 172 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-PMA----LQVIEALLE 172 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc-chH----HHHHHHHHH
Confidence 3444556677777787888887777765433 33344444333333 2222222222222210 000 001111111
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHH--hCCChHHHHHHHHhh----CCCCCchhHHHHHHHHHhcCChHHH
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA--KCKEMDEALRLFDEM----GSRRNIVSLNILINGYIDMELVDLA 170 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a 170 (465)
.+ +..+...-..|.....+|........+.+++ -.++...|...+-.+ ..+-++.....+.+.+...|+.++|
T Consensus 173 l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a 251 (564)
T KOG1174|consen 173 LG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQA 251 (564)
T ss_pred Hh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHH
Confidence 00 0111111112222223333333333344333 334444444443322 4445667778888888899999999
Q ss_pred HHHHHHhhcCChHHHH---HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcC
Q 012360 171 REVFDEIVDKDIVLWR---SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247 (465)
Q Consensus 171 ~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 247 (465)
+..|++...-|+.+.. ...-.+.+.|+.+...++...+.... .-+...|..-.......+++..|..+-+..++.+
T Consensus 252 ~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~ 330 (564)
T KOG1174|consen 252 EDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE 330 (564)
T ss_pred HHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC
Confidence 9888877554443322 22334567788888888887776532 1222333333344456778888888888877764
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012360 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTD--C-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324 (465)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 324 (465)
+.+...+..-...+...++.++|.-.|+... . .+...|.-|+..|...|++.+|...-+...+. +..+..+.+.+
T Consensus 331 -~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~ 408 (564)
T KOG1174|consen 331 -PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLF 408 (564)
T ss_pred -cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhh
Confidence 3345556556677778889999988887654 2 47788999999999999999998877776554 23355666555
Q ss_pred H-HHHH-hcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchHHHHHHHHHhcC
Q 012360 325 L-AACR-HSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYS 400 (465)
Q Consensus 325 ~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 400 (465)
. ..|. ....-++|.+++++... ..|+ ....+.+.+.+...|..+++..+++.... .+|....+.|...+...+
T Consensus 409 g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~N 485 (564)
T KOG1174|consen 409 GTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQN 485 (564)
T ss_pred cceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 3 3333 33456788888888874 3453 55667788889999999999999987554 678888889999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHH
Q 012360 401 EFDLGKKVANNMMKLGNQSHEAYVLL 426 (465)
Q Consensus 401 ~~~~a~~~~~~~~~~~p~~~~~~~~l 426 (465)
.+++|+..|..++.++|.+..+...+
T Consensus 486 e~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 486 EPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHH
Confidence 99999999999999999887654443
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.4e-09 Score=97.02 Aligned_cols=261 Identities=13% Similarity=0.015 Sum_probs=139.4
Q ss_pred ccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc--C-ChHHHHHHHH
Q 012360 116 EYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD--K-DIVLWRSMMH 190 (465)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~ 190 (465)
..+..+.....+-+...+++.+..++++.+ ..++....+..-|.++...|+..+-..+=.++++ | ...+|-++..
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 344445555566666777777777777776 3345556666666677777776666655555544 2 4567777777
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 012360 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270 (465)
Q Consensus 191 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (465)
.|...|+.++|.+.|.+....... -...|.....+++-.+..++|...+...-+.= +.....+-.+..-|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 777777777777777776543211 12355666666666777777776666554421 1111112223334455555555
Q ss_pred HHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 012360 271 ALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERK--GI---KP-NEATFVSVLAACRHSGLITEGCQLF 341 (465)
Q Consensus 271 a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 341 (465)
|.++|.... +.|+...+-+.......+.+.+|..+|+..... .+ .+ -..+++.|.++|.+.+.+++|+..+
T Consensus 399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 555554422 234445555554444555555555555554311 00 00 1223444445555555555555555
Q ss_pred HHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 012360 342 RRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380 (465)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (465)
++... -.+.+..++..+.-.|...|+++.|.+.|.+.
T Consensus 479 q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 479 QKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 55443 22334444455554555555555555555443
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=5.9e-11 Score=93.71 Aligned_cols=162 Identities=11% Similarity=0.043 Sum_probs=111.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (465)
...|.-.|...|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+++... -+.+..+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 344556677777777777777777766 444 356666667777777777777777777632 233566667777777
Q ss_pred HhcCCHHHHHHHHHhCCCCC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHH
Q 012360 365 SRAGLLYQAEEFIKIMPAED----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 440 (465)
|..|++++|...|++....| ...+|..++.+..+.|+.+.|.+.|++.++++|+.+.....++......|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777777766555 34567777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcC
Q 012360 441 EARRNMKELQT 451 (465)
Q Consensus 441 ~~~~~~~~~~~ 451 (465)
.++++....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 77776655544
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=2.7e-10 Score=97.22 Aligned_cols=199 Identities=14% Similarity=0.111 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHH
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (465)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~------ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVL------ 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH------
Confidence 3455566666666666666666666665532 2233444455555555666666666666555543 2223333
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 012360 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQL 340 (465)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 340 (465)
..+...+...|++++|...+++..+....| ....+..+..++...|++++|...
T Consensus 103 -------------------------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 103 -------------------------NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -------------------------HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444455555555555555554432111 223444455556666666666666
Q ss_pred HHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 341 FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
+++.... .+.+...+..+...+...|++++|...+++... +.+...+..++..+...|+.++|..+.+.+...
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666532 122344555666666666666666666655432 223344445555566666666666666655544
No 69
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=2e-12 Score=79.44 Aligned_cols=50 Identities=36% Similarity=0.444 Sum_probs=46.3
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc
Q 012360 47 RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96 (465)
Q Consensus 47 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 96 (465)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=2.5e-10 Score=109.40 Aligned_cols=225 Identities=12% Similarity=-0.050 Sum_probs=171.3
Q ss_pred CHHHHHHHHHHh-----ccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh---------cCCHHHHHHHHhcCCC-
Q 012360 216 DEEVMVSVLSAC-----SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK---------CGSLEEALVTFYKTDC- 280 (465)
Q Consensus 216 ~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~- 280 (465)
+...|...+.+- ...++.++|...+++..+.. +.+...+..+..++.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 344454555442 13456789999999998864 3345566666655542 2457899999987653
Q ss_pred --CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhh
Q 012360 281 --KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEH 356 (465)
Q Consensus 281 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 356 (465)
.+...+..+...+...|++++|...+++..+. .|+ ...+..+..++...|++++|+..++++.+. .|+ ...
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~ 408 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAA 408 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhh
Confidence 36678888888999999999999999999987 454 567888889999999999999999999853 444 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhc
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA--ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE 433 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 433 (465)
+..++..+...|++++|...++++.. .| ++..+..+..++...|++++|...++++....|.+......++..|...
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 34445557778999999999988753 24 4455777888888999999999999998888888888888888888888
Q ss_pred CChHHHHHHHHHHHH
Q 012360 434 GHWTEVAEARRNMKE 448 (465)
Q Consensus 434 g~~~~a~~~~~~~~~ 448 (465)
| ++|...++.+.+
T Consensus 489 g--~~a~~~l~~ll~ 501 (553)
T PRK12370 489 S--ERALPTIREFLE 501 (553)
T ss_pred H--HHHHHHHHHHHH
Confidence 8 478877777654
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=4.1e-08 Score=91.19 Aligned_cols=415 Identities=14% Similarity=0.075 Sum_probs=250.2
Q ss_pred hhHHHHHHHccCChHHHHHHhccCCCC--C-cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhc-c
Q 012360 21 GNSLIHFYGRMALFTDARVLFDKMPFR--D-VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA-R 96 (465)
Q Consensus 21 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~ 96 (465)
.-.....+...|++++|++.++.-... | ..........+.+.|+.++|..+|..+.+.+ |+...|...+..+. .
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhh
Confidence 334456778899999999999876532 3 3456677889999999999999999999975 66666655554443 1
Q ss_pred -----hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHH-HHHHHhhCCCCCchhHHHHHHHHHhcCChHHH
Q 012360 97 -----LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEA-LRLFDEMGSRRNIVSLNILINGYIDMELVDLA 170 (465)
Q Consensus 97 -----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 170 (465)
..+.+...++++.+...- |.......+.-.+.....+... ...+..+-.+.-+.+++.+-..|....+..-.
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 124566778888776653 3222222222222222223222 22223331122234555565666655555555
Q ss_pred HHHHHHhh------------------cCCh--HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcc
Q 012360 171 REVFDEIV------------------DKDI--VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD-EEVMVSVLSACSS 229 (465)
Q Consensus 171 ~~~~~~~~------------------~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~ 229 (465)
.+++.... .|+. .++..+...|...|++++|++++++.++. .|+ ...|..-.+.+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 55555441 1222 34566778888999999999999999885 455 5677788888999
Q ss_pred chhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh----------hH--HHHHHHHHHcC
Q 012360 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV----------TW--TTMIEGLANYG 297 (465)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~--~~l~~~~~~~~ 297 (465)
.|++.+|...++...... ..|..+-+..+..+.+.|++++|.+++....+++.. .| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998875 446677777888899999999999988766544311 22 33467788999
Q ss_pred ChHHHHHHHHHHHHC--CC---CCCHH----------HHHHHHHHHHhcC-------CHHHHHHHHHHhhcCCCCCCCh-
Q 012360 298 LGNEALRVFYQMERK--GI---KPNEA----------TFVSVLAACRHSG-------LITEGCQLFRRMGGVYRVQPTI- 354 (465)
Q Consensus 298 ~~~~a~~~~~~m~~~--g~---~p~~~----------~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~- 354 (465)
++..|++-|..+.+. .+ +-|-+ +|..+++..-+.. -...|++++-.+..........
T Consensus 320 ~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~ 399 (517)
T PF12569_consen 320 DYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEE 399 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 988888766665432 00 22322 3333333222111 1234555555554321110000
Q ss_pred ----------hhHHHHHHHH---HhcCCHHHHHHHHHh-----------C----CCCCccchHHHHHHHHHhcC-ChHHH
Q 012360 355 ----------EHFVCLVDLL---SRAGLLYQAEEFIKI-----------M----PAEDKFISYKALLSACITYS-EFDLG 405 (465)
Q Consensus 355 ----------~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~----~~~~~~~~~~~l~~~~~~~~-~~~~a 405 (465)
.--..+..-. .+....+++...-.. . ..+.|... ++.-+.+.. =.++|
T Consensus 400 ~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~GekL~~t~dPLe~A 476 (517)
T PF12569_consen 400 QEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---LGEKLLKTEDPLEEA 476 (517)
T ss_pred cccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc---cHHHHhcCCcHHHHH
Confidence 0000011000 011111111111100 0 00112211 222333333 47889
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
.++++-+.+..|++..+|..-...|.+.|++--|++.+.+
T Consensus 477 ~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 477 MKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 9999999999999999999999999999999998887764
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=4.1e-10 Score=98.76 Aligned_cols=220 Identities=12% Similarity=-0.015 Sum_probs=133.7
Q ss_pred HHHcCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 012360 192 CVKAKQPEEALELFKKMIDEG-VTPD--EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 192 ~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
....++.+.++.-+.+++... ..|+ ...|..+...+...|+.+.|...|++..+.. +.+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 334456677777777777532 2222 2345555666777788888888888877764 34567777788888888888
Q ss_pred HHHHHHHhcCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 269 EEALVTFYKTDC--K-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 269 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
++|...|++..+ | +..+|..+...+...|++++|.+.+++..+. .|+..........+...++.++|...+++..
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 888888877542 3 4556777777777788888888888887765 4443221122222344567788888886655
Q ss_pred cCCCCCCChhhHHHHHHHHHhcCCHHHH--HHHHHh-CCCC-----CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQA--EEFIKI-MPAE-----DKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 346 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~-~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
. ...|+... ..+. ....|+...+ .+.+.. .... .....|..++..+...|++++|+..|+++++.+|
T Consensus 193 ~--~~~~~~~~-~~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 E--KLDKEQWG-WNIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred h--hCCccccH-HHHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3 22333222 1222 2334444333 222221 1111 1234677777788888888888888888888775
Q ss_pred CC
Q 012360 418 QS 419 (465)
Q Consensus 418 ~~ 419 (465)
.+
T Consensus 268 ~~ 269 (296)
T PRK11189 268 YN 269 (296)
T ss_pred ch
Confidence 43
No 73
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=1.9e-08 Score=82.71 Aligned_cols=412 Identities=10% Similarity=-0.015 Sum_probs=204.0
Q ss_pred hhhHHHHHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHH-HHHhc
Q 012360 20 VGNSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL-FSACA 95 (465)
Q Consensus 20 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~~~~~ 95 (465)
-+++.+..+.+..++++|++++..-.++ +....+.|..+|....++..|-+.|+.+... .|...-|... ...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4555566666666677776666544322 4445566666666666666676666666553 4444444322 23334
Q ss_pred chhhhhhhhHHHHHHHHhCCccchhh--HHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHH
Q 012360 96 RLEKLHYGKTVHCYATKVGLEYMLNM--ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173 (465)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 173 (465)
+.+.+..|+++...|... ++... ...=.......+|+..+..+.++...+.+..+.+.......+.|+++.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 455555566655555432 11110 0000111223455666666665553233444444444444455566666555
Q ss_pred HHHhhcC----ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-hccchhhHhHHHHHHHHHHcCC
Q 012360 174 FDEIVDK----DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA-CSSLSNLQYGRLVHRFILQNNI 248 (465)
Q Consensus 174 ~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~ 248 (465)
|+...+- ....||..+. ..+.|+.+.|++...++.++|++-.+. +++=+.. -.....+..... |..+
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvrsvgNt~~----lh~S-- 238 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVRSVGNTLV----LHQS-- 238 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchhcccchHH----HHHH--
Confidence 5555332 2334443332 234455555665555555555442111 0000000 000000000000 0000
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012360 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-----DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323 (465)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 323 (465)
.-...+|.-...+.+.++++.|.+.+..|++. |+++...+.-.= ..+++-+..+-+.-+...+ +....||..
T Consensus 239 -al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFAN 315 (459)
T KOG4340|consen 239 -ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFAN 315 (459)
T ss_pred -HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHH
Confidence 01223444455667889999999999998853 666655543322 2345555555556566552 234579999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCC-CCChhhHHHHHHHHH-hcCCHHHHHHHHHhCCCCCccchHHHHHHHH-HhcC
Q 012360 324 VLAACRHSGLITEGCQLFRRMGGVYRV-QPTIEHFVCLVDLLS-RAGLLYQAEEFIKIMPAEDKFISYKALLSAC-ITYS 400 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 400 (465)
++-.||+..-++.|-.++-+-... .. -.+...|+ |++++. ..-..++|.+-++.+...-....-...+..- .+..
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~ 393 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHN 393 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998888888887654421 11 12333333 334443 3445666666555443110000011111111 1111
Q ss_pred C----hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC
Q 012360 401 E----FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 401 ~----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
+ ..++++-|++.++..- .+....++.|++..++..+.+.|+.-.+.--.
T Consensus 394 ~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~e 446 (459)
T KOG4340|consen 394 RDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEFCND 446 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhhhcc
Confidence 1 2234444455444431 12556678888999999999999876655433
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.34 E-value=3.5e-08 Score=89.74 Aligned_cols=434 Identities=13% Similarity=0.054 Sum_probs=279.2
Q ss_pred hhhHHHHHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc
Q 012360 20 VGNSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96 (465)
Q Consensus 20 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 96 (465)
.|..++..|- .+++...+++.+.+.+. ...+.....-.+...|+.++|.+....-.+.+ .-+.++|..+.-.+-.
T Consensus 10 lF~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 10 LFRRALKCYE-TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 4455555554 34555555555554422 22333333344567799999999988877654 3466788888888888
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHHHHHHH
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRN-IVSLNILINGYIDMELVDLAREVF 174 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 174 (465)
..++++|.+.+..+...+ +.|..++..+.-.-++.|+++........+ ...|+ ...|..+..++.-.|+...|..++
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999886 667778887777777888888888777666 44554 456888888899999999999998
Q ss_pred HHhhc-----CChHHHHHH------HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHhccchhhHhHHHHHHH
Q 012360 175 DEIVD-----KDIVLWRSM------MHGCVKAKQPEEALELFKKMIDEGVTPDEEVM-VSVLSACSSLSNLQYGRLVHRF 242 (465)
Q Consensus 175 ~~~~~-----~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~ 242 (465)
+...+ ++...+... .....+.|..++|.+.+..-... ..|...+ ..-...+.+.+++++|..++..
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 87632 344443322 23456788888888887665442 2233333 3344557789999999999999
Q ss_pred HHHcCCCCChhHHH-HHHHHHHhcCCHHHHH-HHHhcCCCC--ChhhHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012360 243 ILQNNITQDAFVKT-ALIDMYSKCGSLEEAL-VTFYKTDCK--DVVTWTTM-IEGLANYGLGNEALRVFYQMERKGIKPN 317 (465)
Q Consensus 243 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~~--~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 317 (465)
++..+ ||..-|. .+..++.+-.+..++. .+|....+. -...-..+ +.......-.+....++..+.+.|+++-
T Consensus 245 Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 245 LLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred HHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence 99875 5555554 4444554333333333 555544321 00000000 1111112233445567777888887663
Q ss_pred HHHHHHHHHHHHhcCCHH---H-HHHHHHHhhcCC---------CCCCChhhH--HHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 318 EATFVSVLAACRHSGLIT---E-GCQLFRRMGGVY---------RVQPTIEHF--VCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~---~-a~~~~~~~~~~~---------~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
-..+.++ |-.....+ + +..+...+.... .-+|+...| ..++..+-..|+++.|..+++....
T Consensus 323 f~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 323 FKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred hhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 3333332 22211111 1 111111111110 014555544 4678889999999999999998875
Q ss_pred C-C-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC-----CCC
Q 012360 383 E-D-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR-----KKP 455 (465)
Q Consensus 383 ~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~ 455 (465)
+ | -+..|..-.+.+...|+.++|...++++.+++..|..+-...+.-..++++.++|.++...+.+.|.. .+-
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~m 479 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEM 479 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHh
Confidence 3 3 23345566688899999999999999999999777776668999999999999999999999877651 223
Q ss_pred CCeeeecC
Q 012360 456 GNSIIDLK 463 (465)
Q Consensus 456 ~~~~~~~~ 463 (465)
.+.|.+++
T Consensus 480 qcmWf~~E 487 (700)
T KOG1156|consen 480 QCMWFQLE 487 (700)
T ss_pred hhHHHhHh
Confidence 55666554
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=6.1e-11 Score=98.29 Aligned_cols=196 Identities=12% Similarity=0.046 Sum_probs=164.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 012360 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF-VSVLA 326 (465)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~l~~ 326 (465)
.|-.--+.+..+|.+.|.+.+|.+.|+... .|-+.+|..|-..|.+.++++.|+.++.+-.+. .|-.+|| .-..+
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 344444678899999999999999998755 467789999999999999999999999998877 7777666 45568
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHH
Q 012360 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDL 404 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 404 (465)
.+...++.++|.++|+...+. .+.+++...++...|.-.++++-|+.+++++.. -.++..|+.+.-+|.-.+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhh
Confidence 888999999999999999863 345677777888888999999999999999865 3378889999999999999999
Q ss_pred HHHHHHHHHHhC--C-CCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 405 GKKVANNMMKLG--N-QSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 405 a~~~~~~~~~~~--p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
++..|+++...- | ....+|+.++....-.|++.-|.+.|+-....
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 999999999854 3 23457999999999999999999988866543
No 76
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=6.3e-12 Score=77.17 Aligned_cols=50 Identities=32% Similarity=0.547 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012360 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229 (465)
Q Consensus 180 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (465)
||+.+||.+|++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.4e-08 Score=84.28 Aligned_cols=297 Identities=10% Similarity=-0.039 Sum_probs=212.4
Q ss_pred hCCCCCchhHHHHHHHHHh--cCChHHHHHHHHHh-----hcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 012360 145 MGSRRNIVSLNILINGYID--MELVDLAREVFDEI-----VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217 (465)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 217 (465)
....|...+....+.+++. .++...|...+-.+ .+.|++....+...+...|+.++|...|++.... .|+.
T Consensus 188 ~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~ 265 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDN 265 (564)
T ss_pred eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhh
Confidence 3445555555556665554 34444444444333 3348899999999999999999999999998763 4443
Q ss_pred HH-HHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhhHHHHHHHH
Q 012360 218 EV-MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD---VVTWTTMIEGL 293 (465)
Q Consensus 218 ~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~ 293 (465)
.+ .....-.+...|+.+....+...+.... ..+...|..-........+++.|+.+-++.++.+ +..+-.-..++
T Consensus 266 i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL 344 (564)
T KOG1174|consen 266 VEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL 344 (564)
T ss_pred hhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH
Confidence 22 1222223456778877777777665542 2233344444555666789999999998877544 44555555778
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHH-HHHH-hcCCH
Q 012360 294 ANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV-DLLS-RAGLL 370 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~ 370 (465)
...+++++|.-.|+..... .| +...|..|+.+|...|...+|.-.-..... -++.+..+...+. ..+. .-..-
T Consensus 345 ~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhH
Confidence 8999999999999998765 65 458999999999999999999988887775 3445566655442 2222 22346
Q ss_pred HHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 371 YQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 371 ~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
++|.+++++-.. +| -....+.+...+...|.+++++.++++.+...|+..- ...|++.+...+.+.+|...|....+
T Consensus 421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~L-H~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNL-HNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHH-HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 789999988654 45 3455677778888999999999999999998888765 99999999999999999999987654
Q ss_pred h
Q 012360 449 L 449 (465)
Q Consensus 449 ~ 449 (465)
.
T Consensus 500 ~ 500 (564)
T KOG1174|consen 500 Q 500 (564)
T ss_pred c
Confidence 3
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=3.9e-09 Score=92.66 Aligned_cols=215 Identities=13% Similarity=-0.002 Sum_probs=140.0
Q ss_pred chhhHhHHHHHHHHHHcC-CCC--ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHH
Q 012360 230 LSNLQYGRLVHRFILQNN-ITQ--DAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEAL 303 (465)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 303 (465)
.+..+.++.-+.+++... ..| ....|..+...|...|+.++|...|++.. +.+...|+.+...+...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345666666676666532 122 23456777778888888888888887654 235678888888888888888888
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 304 RVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 304 ~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
..|++..+. .|+ ..++..+..++...|++++|++.+++..+. .|+..........+...+++++|...+.+...
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 888888876 554 467777777888888888888888888753 34332222222234456778888888865432
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHH-------HhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 383 EDKFISYKALLSACITYSEFDLGKKVANNMM-------KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 383 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
..+...|.. .......|+...+ +.++.+. +..|..+..|..++..+.+.|++++|...|++..+.++
T Consensus 194 ~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 194 KLDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hCCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 212222321 2222335555443 2444443 44566667788888888888888888888888776554
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=7.5e-09 Score=94.88 Aligned_cols=225 Identities=19% Similarity=0.191 Sum_probs=145.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHhh--------C-CCCCchhH-HHHHHHHHhcCChHHHHHHHHHhhc-------C---
Q 012360 121 MENALLLMYAKCKEMDEALRLFDEM--------G-SRRNIVSL-NILINGYIDMELVDLAREVFDEIVD-------K--- 180 (465)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~-------~--- 180 (465)
+...+...|...|+++.|..+++.. | ..|...+. +.+...|...+++++|..+|+++.. +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444666666666666666666554 1 12333322 2355566666777777766666522 1
Q ss_pred -ChHHHHHHHHHHHHcCChhHHHHHHHHHHH-----cCCC-CCH-HHHHHHHHHhccchhhHhHHHHHHHHHHc---CCC
Q 012360 181 -DIVLWRSMMHGCVKAKQPEEALELFKKMID-----EGVT-PDE-EVMVSVLSACSSLSNLQYGRLVHRFILQN---NIT 249 (465)
Q Consensus 181 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~ 249 (465)
-..+++.|..+|.+.|++++|...++...+ .|.. |.. ..++.+...|...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 234566667777888887777777666543 1222 222 23455556677788888888877765542 111
Q ss_pred ----CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------ChhhHHHHHHHHHHcCChHHHHHHHHHHH----
Q 012360 250 ----QDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-----------DVVTWTTMIEGLANYGLGNEALRVFYQME---- 310 (465)
Q Consensus 250 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~---- 310 (465)
....+++.+...|...|++++|.++++++... ....++.|...|.+.+++.+|.++|.+..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22457888999999999999999888765521 12367778888888899988888887743
Q ss_pred HCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 311 RKGI-KPN-EATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 311 ~~g~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
..|. .|+ ..+|..|...|...|+++.|+++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2332 233 3578888899999999999998888775
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=5e-08 Score=82.29 Aligned_cols=380 Identities=10% Similarity=0.021 Sum_probs=224.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh
Q 012360 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135 (465)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 135 (465)
+.-+...++++.|+.+++--...+-.-...+-.-+.-++.+.|++++|...+..+.... .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 55567788999999998876543322111222223445568899999999999888754 66677777788888888999
Q ss_pred HHHHHHHHhhCCCCCchhH-HHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 012360 136 DEALRLFDEMGSRRNIVSL-NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214 (465)
Q Consensus 136 ~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 214 (465)
.+|..+-.+. |+.... ..+.....+.++-++-..+-+.+.... .---++....-..-++++|+++|...+.. .
T Consensus 108 ~eA~~~~~ka---~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n 181 (557)
T KOG3785|consen 108 IEAKSIAEKA---PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD--N 181 (557)
T ss_pred HHHHHHHhhC---CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 9999988774 444444 445555667777766666655554332 22223344444445789999999998874 4
Q ss_pred CCHHHHHHHHHH-hccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh--cCCHHHH--HHHHhcCCC---------
Q 012360 215 PDEEVMVSVLSA-CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK--CGSLEEA--LVTFYKTDC--------- 280 (465)
Q Consensus 215 ~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a--~~~~~~~~~--------- 280 (465)
|.-...+.-+.. |.+..-++-+.++++-..+. ++.++...+.......+ .|+..++ .++-+.+.+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 555555555544 56777788888888776664 23344444444433333 2332222 122221111
Q ss_pred -C---------------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-H----hcCC
Q 012360 281 -K---------------------DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC-R----HSGL 333 (465)
Q Consensus 281 -~---------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~----~~~~ 333 (465)
. -+..--.|+--|.+.+++.+|..+.+++.-. .|-......++.+- . ....
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHH
Confidence 0 1112223344566778888888776654321 23222222222221 1 1122
Q ss_pred HHHHHHHHHHhhcCCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHH
Q 012360 334 ITEGCQLFRRMGGVYRVQ-PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVAN 410 (465)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 410 (465)
..-|.+.|+-.-.. +.. .++..-.++...+.-..++++.+-.++.+.. ..|....-.+..+.+..|++.+|+++|-
T Consensus 339 lKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 44566666655433 222 2333344556666666778888887777765 2223333346778888889999988887
Q ss_pred HHHHhCCCCchh-HHHHHHHHhhcCChHHHHHHHHHH
Q 012360 411 NMMKLGNQSHEA-YVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 411 ~~~~~~p~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
+.....-.+..+ ...|+.+|.+.|+.+-|+.++-++
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 776655333333 456788888888888887766543
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.24 E-value=1.9e-08 Score=93.35 Aligned_cols=287 Identities=12% Similarity=0.094 Sum_probs=139.9
Q ss_pred HHHHHhCCChHHHHHHHHhh-CCCCCch-hHHHHHHHHHhcCChHHHHHHHHHhhcC--Ch-HHHHHHHHHHHHc-----
Q 012360 126 LLMYAKCKEMDEALRLFDEM-GSRRNIV-SLNILINGYIDMELVDLAREVFDEIVDK--DI-VLWRSMMHGCVKA----- 195 (465)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~----- 195 (465)
...+...|++++|++.++.- ..-+|.. ........+.+.|+.++|..++..++.. +- .-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 34556677777777777665 3333433 3445556666777777777777777443 22 2333444443222
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhH-hHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 012360 196 KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ-YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274 (465)
Q Consensus 196 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 274 (465)
.+.+...++|+++... -|.......+.-.+.....+. .+..++..+...|+|+ +|+.+-..|....+..-..++
T Consensus 91 ~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 2355556666666553 233333332222222222332 3445555555666433 344444444433222222222
Q ss_pred HhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----------CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH
Q 012360 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK----------GIKPNE--ATFVSVLAACRHSGLITEGCQLFR 342 (465)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----------g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~ 342 (465)
+... ...+... .-.|+. .++..+.+.|...|++++|+++++
T Consensus 166 ~~~~---------------------------~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 166 VEEY---------------------------VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred HHHH---------------------------HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 2110 0000000 012222 233444455556666666666666
Q ss_pred HhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC--C
Q 012360 343 RMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLG--N 417 (465)
Q Consensus 343 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p 417 (465)
+.++. .| .+..|..-.+.+.+.|++.+|.+.++..+. ..|...-+-.+..+.++|+.++|.+++......+ |
T Consensus 219 ~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 219 KAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 66632 23 255555566666666666666666665543 1244444445555556666666666666554433 1
Q ss_pred CC-------chhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 418 QS-------HEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 418 ~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
.. .......+.+|.+.|++..|++.+..+.
T Consensus 296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 0112344666666777666666555443
No 82
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=7.3e-07 Score=81.34 Aligned_cols=402 Identities=10% Similarity=0.040 Sum_probs=252.6
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHh
Q 012360 35 TDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKV 113 (465)
Q Consensus 35 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 113 (465)
+.++.++.+| ...|-..+..+.++|+...-...|++.... .+......|...+......+-++.+..++++.++.
T Consensus 92 er~lv~mHkm----pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 92 ERCLVFMHKM----PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHhcC----CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 4444444444 356777788888999999999999887653 23334456777888777788888899999888864
Q ss_pred CCccchhhHHHHHHHHHhCCChHHHHHHHHhh---------CCCCCchhHHHHHHHHHhcCC---hHHHHHHHHHhhcC-
Q 012360 114 GLEYMLNMENALLLMYAKCKEMDEALRLFDEM---------GSRRNIVSLNILINGYIDMEL---VDLAREVFDEIVDK- 180 (465)
Q Consensus 114 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~- 180 (465)
. | ..-+-.+..+++.+++++|-+.+... .-+.+...|..+.+...+..+ --....+++.+..+
T Consensus 168 ~--P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 168 A--P--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred C--H--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 3 2 33567788888999999999988887 112344456666666555433 23344556665443
Q ss_pred ---ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch----------------------hhHh
Q 012360 181 ---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS----------------------NLQY 235 (465)
Q Consensus 181 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------------~~~~ 235 (465)
-...|+.|...|.+.|++++|..+|++....-. +..-|+.+..+|+.-. +++.
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~ 321 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL 321 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence 346799999999999999999999998876422 2222333333332111 1222
Q ss_pred HHHHHHHHHHcCC-----------CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---C------ChhhHHHHHHHHHH
Q 012360 236 GRLVHRFILQNNI-----------TQDAFVKTALIDMYSKCGSLEEALVTFYKTDC---K------DVVTWTTMIEGLAN 295 (465)
Q Consensus 236 a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~------~~~~~~~l~~~~~~ 295 (465)
...-|+.+..... +.+...|..-+. ...|+..+....|.+... | -...|..+...|-.
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh
Confidence 3333444333211 111222222222 224555555555554331 1 12367888888999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC----------------CChhh
Q 012360 296 YGLGNEALRVFYQMERKGIKPN---EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ----------------PTIEH 356 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------~~~~~ 356 (465)
.|+.+.|..+|++..+-..+-- ..+|..-...-.+..+++.|+++.+.+......+ .+...
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 9999999999998876533221 2344444455556778888999888887431110 01234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC--CccchHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHhh
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPAE--DKFISYKALLSACITYSEFDLGKKVANNMMKLG--NQSHEAYVLLSNFYAL 432 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~ 432 (465)
|..+++..-..|-++....+++++..- -.+.........+-.+.-++++.++|++-+.+. |.-..+|+..+.-+.+
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 556667777788888888888887641 133333333444556777899999999999877 4445566666555543
Q ss_pred ---cCChHHHHHHHHHHHH
Q 012360 433 ---EGHWTEVAEARRNMKE 448 (465)
Q Consensus 433 ---~g~~~~a~~~~~~~~~ 448 (465)
..+.+.|+.+|++..+
T Consensus 560 rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALD 578 (835)
T ss_pred HhcCCCHHHHHHHHHHHHh
Confidence 2467889999998877
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=5.2e-09 Score=82.94 Aligned_cols=193 Identities=15% Similarity=0.051 Sum_probs=150.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 012360 254 VKTALIDMYSKCGSLEEALVTFYKTDCK---DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACR 329 (465)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 329 (465)
+...+.-.|...|+...|..-+++..+. +..+|..+...|.+.|..+.|.+-|++.... .|+ ....|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence 4455677788888888888888877643 3447788888888889999999988888876 554 467777777888
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHH
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKK 407 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~ 407 (465)
..|.+++|.+.|+++........-..+|..+.-+..+.|+++.|.+.|++... .| .+.+...+.....+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 88899999999998887644445567888888888889999999998887654 33 56677788888888899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 408 VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 408 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.++.....++.........+..-.+.|+-+.+-++=..+.+
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99888888877777777777888888888888776665543
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.22 E-value=2.6e-09 Score=92.26 Aligned_cols=250 Identities=10% Similarity=0.067 Sum_probs=166.7
Q ss_pred HHHhcCChHHHHHHHHHhhcC----ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHh
Q 012360 160 GYIDMELVDLAREVFDEIVDK----DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235 (465)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (465)
-+.-.|++..++.-.+ .... +......+.+++...|+.+.++. ++... -.|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHH
Confidence 3445566666664444 2111 23345566788888888775543 33333 36666666666655555455555
Q ss_pred HHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 012360 236 GRLVHRFILQNNIT-QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314 (465)
Q Consensus 236 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 314 (465)
+..-++........ .+..........+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 55555544433323 23333334445666789999999998876 46667777889999999999999999999865
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-Cccch
Q 012360 315 KPNEATFVSVLAACRH----SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-E-DKFIS 388 (465)
Q Consensus 315 ~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~ 388 (465)
..| .+...+..++.. .+.+.+|..+|+++.+ ..++++.+.+.+..++...|++++|.+++.+... . .++.+
T Consensus 161 ~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 161 DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 333 444555555443 3469999999999986 4567888899999999999999999999987654 3 36777
Q ss_pred HHHHHHHHHhcCCh-HHHHHHHHHHHHhCCCCch
Q 012360 389 YKALLSACITYSEF-DLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 389 ~~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~~ 421 (465)
+..++.+....|+. +.+.+.+.++.+..|+++.
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 77888887888887 7788899999999998775
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.2e-07 Score=84.58 Aligned_cols=392 Identities=10% Similarity=-0.029 Sum_probs=240.8
Q ss_pred HHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch-hhHHHHHHHhcchhhhh
Q 012360 26 HFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADK-ITLVILFSACARLEKLH 101 (465)
Q Consensus 26 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~ 101 (465)
++....|+++.|+.+|-+.. ++|-..|+.=..+|...|++++|++=-.+-++. .|+= -.|+....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 45567899999999998755 557778888888999999999998877666653 4553 36888888888899999
Q ss_pred hhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh---HHHHHHHHhhCCCC------CchhHHHHHHHHHh---------
Q 012360 102 YGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM---DEALRLFDEMGSRR------NIVSLNILINGYID--------- 163 (465)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~------~~~~~~~l~~~~~~--------- 163 (465)
+|...|..-++.. +.+...++.+..++...... -.--.++..+...| ....|..++..+-+
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999888764 44555666677666211000 00001111110011 11122222222221
Q ss_pred -cCChHHHHHHHHHh----------------hcC----------------------ChHHHHHHHHHHHHcCChhHHHHH
Q 012360 164 -MELVDLAREVFDEI----------------VDK----------------------DIVLWRSMMHGCVKAKQPEEALEL 204 (465)
Q Consensus 164 -~~~~~~a~~~~~~~----------------~~~----------------------~~~~~~~l~~~~~~~g~~~~a~~~ 204 (465)
-.++..+.-.+... ..| -..-...+.++..+..+++.|.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 11111121111111 000 011244566777778888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHH-------HHHHHHHhcCCHHHHHHHHhc
Q 012360 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT-------ALIDMYSKCGSLEEALVTFYK 277 (465)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~~~ 277 (465)
+....+.. -+..-++....++...|.+..+........+.|... ..-|+ .+..+|.+.++++.+...|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 88887753 344455666677888888888777777666655321 12222 233456666778888888776
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhh
Q 012360 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE-ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356 (465)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (465)
...+... -....+....+++........-. .|.. .....-...+.+.|++..|+..|.+++.. .+-|...
T Consensus 324 aLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~l 394 (539)
T KOG0548|consen 324 ALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARL 394 (539)
T ss_pred HhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHH
Confidence 4422111 11122233445555544443322 3332 12223356778889999999999998864 3557888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 432 (465)
|..-.-+|.+.|.+..|++-.+.... +| ....|..-+.++....+++.|.+.|++.++.+|.+..+...+..+...
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 88888899999999988887665543 33 334455555566667789999999999999999888866666666654
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.19 E-value=6.8e-08 Score=81.15 Aligned_cols=302 Identities=13% Similarity=0.078 Sum_probs=178.8
Q ss_pred cchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHH---HHHH
Q 012360 117 YMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRN-IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRS---MMHG 191 (465)
Q Consensus 117 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~ 191 (465)
.++.-..-+.+.+...|++..|+.-|... ...|+ -.++-.-...|...|+...|+.-+.+..+..+..+.+ -...
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 44555566777788888888888888776 22332 2233334456777788888887777775433333333 2345
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCH--H------------HHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHH
Q 012360 192 CVKAKQPEEALELFKKMIDEGVTPDE--E------------VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257 (465)
Q Consensus 192 ~~~~g~~~~a~~~~~~~~~~~~~~~~--~------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (465)
+.++|.+++|..-|+..++....... . .....+..+...|+...|+.....+++.. +-+...+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 77888888888888888775332110 1 11223334556677777777777776643 445566666
Q ss_pred HHHHHHhcCCHHHHHHHHhc---CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH----HHHH---HH-
Q 012360 258 LIDMYSKCGSLEEALVTFYK---TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT----FVSV---LA- 326 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~l---~~- 326 (465)
-..+|...|++..|+.-++. +...+...+-.+-..+...|+.+.++...++-.+. .||... |..| ..
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHH
Confidence 67777777777777655543 33445566666666677777777777777766655 555432 2111 11
Q ss_pred -----HHHhcCCHHHHHHHHHHhhcCCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHH
Q 012360 327 -----ACRHSGLITEGCQLFRRMGGVYRVQPT-----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLS 394 (465)
Q Consensus 327 -----~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~ 394 (465)
.....++|.+++...+...+. .|. ...+..+-.++...|++.+|+....++.. .| |+.++..-..
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 122345666666666665532 232 22233444555566667777766666543 23 4566666666
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYV 424 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 424 (465)
+|.-...++.|+.-|+++.+.+|++..+-.
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 666666777777777777777766655333
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.15 E-value=1e-07 Score=88.10 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=31.4
Q ss_pred ccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 012360 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307 (465)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 307 (465)
.....+.+|+.+++.+...+. -..-|..+...|...|+++.|.++|-+.. .++-.|..|.+.|++++|.++-.
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHH
Confidence 334444444444444443321 12233344444555555555555543322 23333444455555555544433
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.6e-06 Score=78.35 Aligned_cols=380 Identities=12% Similarity=0.056 Sum_probs=207.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh
Q 012360 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135 (465)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 135 (465)
+..+...|++++|.....++...+ +-|...+..-+-+....+.+++|+.+.+.-... ..+...+---.-+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 455677889999999999998865 445556777777888999999998554432110 11111111223344578999
Q ss_pred HHHHHHHHhhCCCCCc-hhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHH-------------------------
Q 012360 136 DEALRLFDEMGSRRNI-VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMM------------------------- 189 (465)
Q Consensus 136 ~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~------------------------- 189 (465)
|+|+..++-. .++. .+...-...+.+.|++++|.++|+.+.+.+...+..-+
T Consensus 96 Dealk~~~~~--~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 96 DEALKTLKGL--DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED 173 (652)
T ss_pred HHHHHHHhcc--cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence 9999999944 4443 36666678889999999999999998554333332222
Q ss_pred ---------HHHHHcCChhHHHHHHHHHHHcC-------CCCCHH-------HHHHHHHHhccchhhHhHHHHHHHHHHc
Q 012360 190 ---------HGCVKAKQPEEALELFKKMIDEG-------VTPDEE-------VMVSVLSACSSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 190 ---------~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (465)
..++..|++.+|+++++...+.+ -.-+.. .-.-+.-++-..|+.++|..++....+.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 22334445555555544442110 000000 0011122233444444555544444444
Q ss_pred CCCCChhH----HHHHHHHHHhcCCHH--HHHHHHhcCCCC---------------ChhhHHHHHHHHHHcCChHHHHHH
Q 012360 247 NITQDAFV----KTALIDMYSKCGSLE--EALVTFYKTDCK---------------DVVTWTTMIEGLANYGLGNEALRV 305 (465)
Q Consensus 247 ~~~~~~~~----~~~l~~~~~~~~~~~--~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~ 305 (465)
+. +|... .|.|+.. ....++- .++..++..... .+..-+.++..| .+..+.+.++
T Consensus 254 ~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~ 329 (652)
T KOG2376|consen 254 NP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVREL 329 (652)
T ss_pred cC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHH
Confidence 31 11111 1111111 1100100 111111111100 000011111111 1222333332
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH----
Q 012360 306 FYQMERKGIKPNEATFVSVLAACR--HSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIK---- 378 (465)
Q Consensus 306 ~~~m~~~g~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~---- 378 (465)
..... +..|. ..+..++..+. +...+..+..++....+. .+- ...+....+......|+++.|.+++.
T Consensus 330 ~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 330 SASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 22211 11333 33444444433 223577888888888753 222 24556677788899999999999998
Q ss_pred ----hCCC-CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC----CC---CchhHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 379 ----IMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMKLG----NQ---SHEAYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 379 ----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
.+.. ...+.+...+...+.+.++.+.|..++.+++..- +. -..++..++..-.+.|+-++|...++++
T Consensus 405 ~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 405 SWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 4433 2345566677777888888888999998887721 22 2224556666667889999999999998
Q ss_pred HHh
Q 012360 447 KEL 449 (465)
Q Consensus 447 ~~~ 449 (465)
.+.
T Consensus 485 ~k~ 487 (652)
T KOG2376|consen 485 VKF 487 (652)
T ss_pred HHh
Confidence 764
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.11 E-value=4e-07 Score=76.66 Aligned_cols=290 Identities=9% Similarity=0.014 Sum_probs=173.0
Q ss_pred hhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCchh-HHHHHHHHH
Q 012360 85 ITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIVS-LNILINGYI 162 (465)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~ 162 (465)
.-..-+...+...|++..|+.-|...++.+ +.+-.++-.-...|...|+-.-|+.-+.+. ..+||-.. -..-...+.
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 334456666666777777777777666542 112222233345666677766666666665 55666443 223345666
Q ss_pred hcCChHHHHHHHHHhhcCCh------H------------HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012360 163 DMELVDLAREVFDEIVDKDI------V------------LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224 (465)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~~~------~------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 224 (465)
+.|.+++|..-|+.+.+.++ . .....+..+...|+...|+.....+++- .+.|...+..-.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHH
Confidence 77788888777777744311 1 1112233455667777777777777764 244666666667
Q ss_pred HHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChh----hHHHH---------
Q 012360 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDVV----TWTTM--------- 289 (465)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~l--------- 289 (465)
.+|...|++..|+.-++...+.. ..+...+..+...+...|+.+.++...++..+ ||.. .|..+
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH
Confidence 77777777777777666665543 33455555666777777777777777766553 3221 22222
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC--HHH---HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHH
Q 012360 290 IEGLANYGLGNEALRVFYQMERKGIKPN--EAT---FVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDL 363 (465)
Q Consensus 290 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 363 (465)
+......+++.++.+..+...+. .|. ... +..+-.++...|++.+|++...++.. +.| |+.++..-..+
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHHHHHHHHH
Confidence 11233455666666666666665 343 222 23333555566777777777777773 344 36677777777
Q ss_pred HHhcCCHHHHHHHHHhCCC
Q 012360 364 LSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~ 382 (465)
|.-...++.|+.-|+...+
T Consensus 351 ~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HhhhHHHHHHHHHHHHHHh
Confidence 7777777777777776654
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=7.3e-07 Score=81.39 Aligned_cols=259 Identities=10% Similarity=-0.023 Sum_probs=142.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH---HHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 012360 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS---VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266 (465)
Q Consensus 190 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (465)
..+...|++++|.+.+++..+.. +.+...+.. ........+..+.+.+.+.. .....+........+...+...|
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcC
Confidence 34556677777777777766642 222223221 11111123334444444433 11111222334445566777778
Q ss_pred CHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 012360 267 SLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNE--ATFVSVLAACRHSGLITEGCQL 340 (465)
Q Consensus 267 ~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~~~~~~a~~~ 340 (465)
++++|...+++.. +.+...+..+...+...|++++|..++++...... .|+. ..|..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888877777654 23455667777778888888888888887766421 1222 2345667777888888888888
Q ss_pred HHHhhcCCCCCCChhhH-H--HHHHHHHhcCCHHHHHHH---HHhCCCC-C-ccchH--HHHHHHHHhcCChHHHHHHHH
Q 012360 341 FRRMGGVYRVQPTIEHF-V--CLVDLLSRAGLLYQAEEF---IKIMPAE-D-KFISY--KALLSACITYSEFDLGKKVAN 410 (465)
Q Consensus 341 ~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~-~-~~~~~--~~l~~~~~~~~~~~~a~~~~~ 410 (465)
++++.......+..... + .++..+...|....+.++ ....... + ....+ .....++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 88875321111111111 1 222333334433333322 1111111 1 11112 245566678888999999988
Q ss_pred HHHHhC-C--------CCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 411 NMMKLG-N--------QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 411 ~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.+.... . .........+.++...|++++|.+.+.......
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 887633 1 123345566777889999999999888776543
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=1.6e-09 Score=93.62 Aligned_cols=245 Identities=8% Similarity=-0.020 Sum_probs=166.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 012360 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269 (465)
Q Consensus 190 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (465)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788888887665 322222223344556677788888766543 4443433 666666666655555445666
Q ss_pred HHHHHHhcCC-CC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 012360 270 EALVTFYKTD-CK----DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344 (465)
Q Consensus 270 ~a~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 344 (465)
.+..-+++.. .+ +..........+...|++++|++++..- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6766665433 22 2222222234466679999999888642 35667777889999999999999999999
Q ss_pred hcCCCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHhCCCC--CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 345 GGVYRVQPTIEHFVCLVDLLS----RAGLLYQAEEFIKIMPAE--DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 345 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
.+. ..| .+...+..++. ..+.+.+|..+|+++..+ +++.+.+.+..++...|++++|.++++++.+.+|.
T Consensus 158 ~~~---~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI---DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC---SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc---CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 853 334 33344444443 344799999999998664 46777888999999999999999999999999999
Q ss_pred CchhHHHHHHHHhhcCCh-HHHHHHHHHHHHh
Q 012360 419 SHEAYVLLSNFYALEGHW-TEVAEARRNMKEL 449 (465)
Q Consensus 419 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 449 (465)
++.+...++.+....|+. +.+.+++.+++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999988 6678888887764
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=1.3e-06 Score=81.90 Aligned_cols=234 Identities=12% Similarity=0.074 Sum_probs=140.7
Q ss_pred cchhhhHHHH--HHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc-C--------CCCchh
Q 012360 17 DIYVGNSLIH--FYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-G--------IVADKI 85 (465)
Q Consensus 17 ~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~--------~~~~~~ 85 (465)
|..|-..+++ .|..-|+.+.|.+-.+.+. +...|..+.+.|.+.++.+-|.-.+-.|... | ..|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4444455544 4666788888877766654 3467889999999988888887776665431 1 1222 2
Q ss_pred hHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcC
Q 012360 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME 165 (465)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (465)
+=..+.......|-+++|+.++.+-.+. ..|=+.|...|.+++|.++-+.-..--=..||......+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 2223333445678888999988887764 3344567778999999888765421112346666677777788
Q ss_pred ChHHHHHHHHHhhcC-----------------------ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 012360 166 LVDLAREVFDEIVDK-----------------------DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS 222 (465)
Q Consensus 166 ~~~~a~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (465)
+.+.|++.|++...+ |...|......+-..|+.+.|+.+|....+ |-.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 888888888765322 333344444444445555555555554432 334
Q ss_pred HHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 012360 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277 (465)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 277 (465)
+++..|-.|+.++|.++-++- .|....-.+.+.|-..|++.+|..+|.+
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445555556666665554432 2333344455566666666666655543
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=1.3e-07 Score=78.06 Aligned_cols=252 Identities=13% Similarity=0.061 Sum_probs=158.4
Q ss_pred cchhhhHHHHHHHccCChHHHHHHhccCC--CCCcccHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 012360 17 DIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNT-LMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSA 93 (465)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 93 (465)
+..-.+.|..+|-...++..|-..++.+. .|...-|.. -...+.+.+.+..|+++...|... |+...-..-+.+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqa 119 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQA 119 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 56677788888889999999999999886 344444432 246778899999999999988652 333222222232
Q ss_pred h--cchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh----CCCCCchhHHHHHHHHHhcCCh
Q 012360 94 C--ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM----GSRRNIVSLNILINGYIDMELV 167 (465)
Q Consensus 94 ~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~ 167 (465)
. ...+++..+..+.++.-.. .+..+.+.......+.|+++.|.+-|+.. |.. ...+|+.-+ +..+.|+.
T Consensus 120 AIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qy 194 (459)
T KOG4340|consen 120 AIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQY 194 (459)
T ss_pred HHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhH
Confidence 2 3567888888888776432 34455555666677899999999999987 433 344566544 44577899
Q ss_pred HHHHHHHHHhhcC-----------------Ch---------------HHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCC
Q 012360 168 DLAREVFDEIVDK-----------------DI---------------VLWRSMMHGCVKAKQPEEALELFKKMIDE-GVT 214 (465)
Q Consensus 168 ~~a~~~~~~~~~~-----------------~~---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~ 214 (465)
+.|++...+++++ |+ ..+|.-...+.+.|+++.|.+.+..|.-+ .-.
T Consensus 195 asALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~e 274 (459)
T KOG4340|consen 195 ASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEE 274 (459)
T ss_pred HHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccccc
Confidence 9999998888443 11 11233333345667777777777666422 123
Q ss_pred CCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 012360 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278 (465)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 278 (465)
.|+.|...+.-. ...+++.....-+..+.+.+ +....+|..++-.||+..-++.|-.++.+-
T Consensus 275 lDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 275 LDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred CCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 345555433211 22344444444455555543 234567777777777777777777766543
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=3.1e-09 Score=95.15 Aligned_cols=215 Identities=13% Similarity=0.069 Sum_probs=165.9
Q ss_pred hccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHH
Q 012360 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEAL 303 (465)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 303 (465)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+ .|......|...|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356777888888888887765 55677888888888888888888888876553 35667777778888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH
Q 012360 304 RVFYQMERKGIKPNEATFVSVL-----------AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372 (465)
Q Consensus 304 ~~~~~m~~~g~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 372 (465)
+.++.-+... |.. ..+. ..+.....+....++|-++....+..+|+.+...|.-.|.-.|++++
T Consensus 374 ~~L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 8887765442 110 0000 12222233445566666665554555788888999999999999999
Q ss_pred HHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 373 AEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 373 A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
|.+.|+.+.. +| |...||.|+..++...+.++|+..|++++++.|.-..+.+.|+..|...|.|++|.+.|=...
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999998654 55 788899999999999999999999999999999999999999999999999999988776543
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=9.8e-08 Score=85.09 Aligned_cols=374 Identities=11% Similarity=0.035 Sum_probs=232.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccc-hhhHHHHHHHHHhCCCh
Q 012360 57 SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM-LNMENALLLMYAKCKEM 135 (465)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 135 (465)
.+.+..|+++.|+.+|.+..... +++...|+.=..+++..|++++|++=-..-++. .|+ ...|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45677899999999999988765 457778888899999999999988766666654 444 45688888999999999
Q ss_pred HHHHHHHHhh-CCCCCc-hhHHHHHHHHHhcCChHHHHHHH------HHhh-cC------ChHHHHHHHHHHHHc-----
Q 012360 136 DEALRLFDEM-GSRRNI-VSLNILINGYIDMELVDLAREVF------DEIV-DK------DIVLWRSMMHGCVKA----- 195 (465)
Q Consensus 136 ~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~------~~~~-~~------~~~~~~~l~~~~~~~----- 195 (465)
++|+..|.+- ...|+. ..++-+..++.... .+.+.| ..+. .| ....|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999886 555543 45666666651110 011111 1110 00 111222222222110
Q ss_pred --CChhHHHHHHHHHHH--------cC-------CCC------------C----------HHHHHHHHHHhccchhhHhH
Q 012360 196 --KQPEEALELFKKMID--------EG-------VTP------------D----------EEVMVSVLSACSSLSNLQYG 236 (465)
Q Consensus 196 --g~~~~a~~~~~~~~~--------~~-------~~~------------~----------~~~~~~ll~~~~~~~~~~~a 236 (465)
.+.+........+.. .| ..| | ..-...+.++..+..+++.+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 011111111111100 00 111 0 11233455555566677777
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---h-------hHHHHHHHHHHcCChHHHHHHH
Q 012360 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV---V-------TWTTMIEGLANYGLGNEALRVF 306 (465)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~-------~~~~l~~~~~~~~~~~~a~~~~ 306 (465)
.+.+....+.. .+..-++....+|...|.+..+...-....+..- . .+..+..+|.+.++++.+...|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 77777776654 4455556666677777776666555544332111 1 1222334555666777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC
Q 012360 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI-EHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED 384 (465)
Q Consensus 307 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 384 (465)
.+.......|+.. .+....+++....+... -+.|.. .-...-...+.+.|++..|.+.|.++.. +|
T Consensus 322 ~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred HHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 7755543333321 12233344444433333 122322 1222336678899999999999998754 34
Q ss_pred -ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 385 -KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 385 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
|...|..-.-+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|+.|.+.|++..+.+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 788899999999999999999999999999999999999999999999999999999999776654
No 96
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.03 E-value=3.1e-06 Score=79.01 Aligned_cols=381 Identities=13% Similarity=0.013 Sum_probs=237.0
Q ss_pred HhcCChhHHHHH----HHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh
Q 012360 60 NDFSDSGEVLIL----FKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135 (465)
Q Consensus 60 ~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 135 (465)
.-..+.+++.-. +.++....+.-|...|..+.-++...|++..+-+.|++....- .-....|+.+...|...|.-
T Consensus 295 i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~ 373 (799)
T KOG4162|consen 295 IPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSD 373 (799)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccc
Confidence 334455555433 2333334455677788888888888999999999998887643 33455678888888889998
Q ss_pred HHHHHHHHhh-CCC--CCchhHHHHH-HHHH-hcCChHHHHHHHHHhhc--------CChHHHHHHHHHHHHc-------
Q 012360 136 DEALRLFDEM-GSR--RNIVSLNILI-NGYI-DMELVDLAREVFDEIVD--------KDIVLWRSMMHGCVKA------- 195 (465)
Q Consensus 136 ~~A~~~~~~~-~~~--~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~------- 195 (465)
..|..+++.. +.. |+..+--.++ ..|. +.+.++++++.-.+... .....|-.+.-+|...
T Consensus 374 s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~ 453 (799)
T KOG4162|consen 374 SKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK 453 (799)
T ss_pred hHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh
Confidence 8999998776 444 4444433333 3333 45677777766665533 1333444444444321
Q ss_pred ----CChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 012360 196 ----KQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270 (465)
Q Consensus 196 ----g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (465)
....++++.+++..+.+ -.|+...|..+ -|+-.++.+.|.+..++..+.+-..+...|..+.-.+...+++.+
T Consensus 454 seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 454 SERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 23456777788777653 33443333333 356778899999999999988667788888888888888999999
Q ss_pred HHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---------------------CC-----CC--CHH
Q 012360 271 ALVTFYKTDCK---DVVTWTTMIEGLANYGLGNEALRVFYQMERK---------------------GI-----KP--NEA 319 (465)
Q Consensus 271 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------------g~-----~p--~~~ 319 (465)
|+.+.+..... |......-+..-...++.+++......+... |. .| ...
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 99888754421 1111111122222345555554443333211 10 11 112
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHhhcCCCCCCC--------hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-cc
Q 012360 320 TFVSVLAACRHSG---LITEGCQLFRRMGGVYRVQPT--------IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KF 386 (465)
Q Consensus 320 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~ 386 (465)
++..+..-....+ ..+.. +. ...+.|. ...|......+.+.+..++|...+.+... .| .+
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~------Lp-~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~ 684 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELK------LP-SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSA 684 (799)
T ss_pred hhHHHHHHHHhhhhhcccccc------cC-cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH
Confidence 2222222111111 11111 11 1122222 22445666778888999999877766643 22 55
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHH--HHHHHHHhc
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE--ARRNMKELQ 450 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~ 450 (465)
..|...+..+...|..++|.+.|..+..++|+++.+...++.++.+.|+..-|.. ++..+.+.+
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 6677777788889999999999999999999999999999999999998777777 777776543
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=2.3e-06 Score=88.41 Aligned_cols=323 Identities=11% Similarity=0.019 Sum_probs=207.1
Q ss_pred HHHhCCChHHHHHHHHhhC---CCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---C-----C----hHHHHHHHHHH
Q 012360 128 MYAKCKEMDEALRLFDEMG---SRRNIVSLNILINGYIDMELVDLAREVFDEIVD---K-----D----IVLWRSMMHGC 192 (465)
Q Consensus 128 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-----~----~~~~~~l~~~~ 192 (465)
.....|+++.+...++.+. ...+..........+...|+++++...+..... . + ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776651 111222233444555678899999888876522 1 1 11222233456
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhccchhhHhHHHHHHHHHHcCC---CC--ChhHHHHHHHHHH
Q 012360 193 VKAKQPEEALELFKKMIDEGVTPDE----EVMVSVLSACSSLSNLQYGRLVHRFILQNNI---TQ--DAFVKTALIDMYS 263 (465)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 263 (465)
...|++++|...+++....-...+. .....+...+...|+++.|...+.+...... .+ ...+...+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6889999999999988763111121 2334455566789999999999888765311 11 1234556677888
Q ss_pred hcCCHHHHHHHHhcCCC-------CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 012360 264 KCGSLEEALVTFYKTDC-------KD----VVTWTTMIEGLANYGLGNEALRVFYQMERK--GIKPN--EATFVSVLAAC 328 (465)
Q Consensus 264 ~~~~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~l~~~~ 328 (465)
..|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...+. ...+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999988765431 11 123445556677789999999998887543 11122 23445566777
Q ss_pred HhcCCHHHHHHHHHHhhcCCC-CCCChh--h-H-HHHHHHHHhcCCHHHHHHHHHhCCCCC--ccc----hHHHHHHHHH
Q 012360 329 RHSGLITEGCQLFRRMGGVYR-VQPTIE--H-F-VCLVDLLSRAGLLYQAEEFIKIMPAED--KFI----SYKALLSACI 397 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~--~-~-~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~l~~~~~ 397 (465)
...|+++.|...++.+..... ...... . . ...+..+...|+.+.|..++....... ... .+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 889999999999988753211 111110 0 0 112244556899999999987765421 111 1345677788
Q ss_pred hcCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 398 TYSEFDLGKKVANNMMKLG------NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
..|++++|...++++.+.. +....++..++.++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999998753 1223357788899999999999999999887654
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.00 E-value=3.1e-06 Score=77.21 Aligned_cols=193 Identities=10% Similarity=-0.008 Sum_probs=103.6
Q ss_pred HHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----Ch--hhHHHHHHHHH
Q 012360 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-----DV--VTWTTMIEGLA 294 (465)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~l~~~~~ 294 (465)
.+...+...|+++.|...+++..+.. +.+...+..+..++...|++++|...+++..+. +. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445566666777777777666654 334555666667777777777777777654421 11 23445666777
Q ss_pred HcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHhhcC-CCCCCChhhHHHHHHHHHh
Q 012360 295 NYGLGNEALRVFYQMERKGI-KPNEATF-V--SVLAACRHSGLITEGCQL---FRRMGGV-YRVQPTIEHFVCLVDLLSR 366 (465)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~-~p~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~~~~-~~~~~~~~~~~~l~~~~~~ 366 (465)
..|++++|..++++...... .+..... + .++..+...|....+.++ ....... .+ ............++..
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAG 276 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhc
Confidence 77888888888877654321 1111111 1 222333334433333222 1111110 01 1111112245666777
Q ss_pred cCCHHHHHHHHHhCCC---C----C----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 367 AGLLYQAEEFIKIMPA---E----D----KFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~---~----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.|+.++|..+++.+.. . + .....-....++...|++++|.+.+..++...
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888888876643 1 1 11112222334557899999999998887743
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.97 E-value=9.3e-08 Score=81.52 Aligned_cols=180 Identities=12% Similarity=-0.042 Sum_probs=117.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Ch---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----
Q 012360 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDC--K-DV---VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA---- 319 (465)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---- 319 (465)
.....+..+...+...|++++|...|+++.. | +. ..+..+..++...|++++|...++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 3455666677777778888888877776542 2 22 35566677777778888888888887765 33221
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHH
Q 012360 320 TFVSVLAACRHS--------GLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390 (465)
Q Consensus 320 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 390 (465)
++..+..++... |++++|.+.++++... .|+ ...+..+..... ..... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHH
Confidence 344445555543 6677777777777743 233 222222211100 00000 00112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSH---EAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.+...+.+.|++++|+..++++++..|+++ ..+..++.++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678899999999999999999877654 67899999999999999999999887654
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.95 E-value=8.3e-08 Score=78.36 Aligned_cols=117 Identities=11% Similarity=0.051 Sum_probs=61.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHH-HhcCC--hHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSAC-ITYSE--FDLG 405 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~-~~~~~--~~~a 405 (465)
.++.++++..++...+ .-+.+...|..+...|...|++++|...|++... ..+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3444455555555443 2234455555555555555555555555555432 22444455555442 34444 3556
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.++++++++.+|+++.++..++..+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666666555555555566666666666666655555444
No 101
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=2.8e-06 Score=78.87 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=75.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCH
Q 012360 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 370 (465)
.+....+.+.+|+.+++.+.+. +....-|..+.+.|...|+++.|.++|-+.- .++--|..|.+.|++
T Consensus 740 eaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccH
Confidence 3344555666666666666554 2223345555666667777777776665543 233445667777777
Q ss_pred HHHHHHHHhCCCC-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 371 YQAEEFIKIMPAE-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 371 ~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
+.|.++-.+...+ .....|-+-..-+-++|++.+|+++|- ..+.++ ..+.+|-+.|..++.+++.++
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyi---ti~~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYI---TIGEPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeE---EccCch-----HHHHHHHhhCcchHHHHHHHH
Confidence 7777766655432 233345444555556666666666553 223111 235566677777776666654
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.90 E-value=6.9e-08 Score=74.57 Aligned_cols=123 Identities=10% Similarity=-0.039 Sum_probs=93.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 012360 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA- 382 (465)
Q Consensus 304 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 382 (465)
.++++..+. .|+. +..+...+...|++++|...|+.+.. --+.+...+..+..++.+.|++++|...|+....
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 455555554 4443 44567777888888888888888874 2344677888888888888888888888887654
Q ss_pred -CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 012360 383 -EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 383 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 432 (465)
+.+...+..++.++...|++++|+..|+++++..|+++..+...+.++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34777888888888888999999999999999888888877777666543
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=4.3e-05 Score=73.79 Aligned_cols=275 Identities=11% Similarity=0.078 Sum_probs=134.6
Q ss_pred CChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 012360 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212 (465)
Q Consensus 133 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 212 (465)
+..+.|.++-++.. ....|+.+..+-.+.|.+.+|++-|-+.. |+..|..++....+.|.|++-.+.+....+..
T Consensus 1089 ~~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred hhHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 34444444444332 23345555555555555555554443322 33445555555555555555555554444443
Q ss_pred CCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHH
Q 012360 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292 (465)
Q Consensus 213 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 292 (465)
-.|... ..++-+|++.++..+-..++ .-|+..-...+..-|...+.++.|.-+|. ++..|..|...
T Consensus 1164 ~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~T 1229 (1666)
T KOG0985|consen 1164 REPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLAST 1229 (1666)
T ss_pred cCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHH
Confidence 333322 23444555555444333222 12444444444455555555555544443 44556667777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH
Q 012360 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 372 (465)
+...|++..|.+.-++. .+..||..+-.+|...+.+.-|. +-.- ++-....-...|++.|...|-+++
T Consensus 1230 LV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL-~iivhadeLeeli~~Yq~rGyFeE 1297 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGL-NIIVHADELEELIEYYQDRGYFEE 1297 (1666)
T ss_pred HHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCc-eEEEehHhHHHHHHHHHhcCcHHH
Confidence 77777777766654432 24456666666666655443331 1100 112234445567777777777777
Q ss_pred HHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHH-hC-C------CCchhHHHHHHHHhhcCChHHH
Q 012360 373 AEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMK-LG-N------QSHEAYVLLSNFYALEGHWTEV 439 (465)
Q Consensus 373 A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~a 439 (465)
-+.+++.... ......|..|.-.|.+- ++++..+.++-... .+ | +....|..+...|.+-..|+.|
T Consensus 1298 lIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1298 LISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 7777776543 22344455555555443 34444444333322 11 1 1223455555555555555554
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.87 E-value=2.1e-09 Score=59.02 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=31.2
Q ss_pred hccCCcchhhhHHHHHHHccCChHHHHHHhccCC
Q 012360 12 TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP 45 (465)
Q Consensus 12 ~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 45 (465)
+|++||..+||+||+.|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999884
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=6e-06 Score=85.39 Aligned_cols=321 Identities=10% Similarity=-0.058 Sum_probs=201.6
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh----CC-C----CCch--hHHHHHHHHHhcC
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM----GS-R----RNIV--SLNILINGYIDME 165 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~-~----~~~~--~~~~l~~~~~~~~ 165 (465)
.|+...+..++..+.......+..........+...|++++|...+... .. . +... ....+...+...|
T Consensus 387 ~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 466 (903)
T PRK04841 387 QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG 466 (903)
T ss_pred cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC
Confidence 4555555555444311111112223344455667789999999988876 11 1 1111 1222334556789
Q ss_pred ChHHHHHHHHHhhc--C--Ch----HHHHHHHHHHHHcCChhHHHHHHHHHHHcCC---CCC--HHHHHHHHHHhccchh
Q 012360 166 LVDLAREVFDEIVD--K--DI----VLWRSMMHGCVKAKQPEEALELFKKMIDEGV---TPD--EEVMVSVLSACSSLSN 232 (465)
Q Consensus 166 ~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~~~ 232 (465)
++++|...++.... + +. ...+.+...+...|++++|...+++...... .+. ..++..+...+...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 99999999987643 2 21 2445566677889999999999988775311 111 2344455666788999
Q ss_pred hHhHHHHHHHHHHc----CCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC------C--ChhhHHHHHHHHHHcC
Q 012360 233 LQYGRLVHRFILQN----NIT--Q-DAFVKTALIDMYSKCGSLEEALVTFYKTDC------K--DVVTWTTMIEGLANYG 297 (465)
Q Consensus 233 ~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~--~~~~~~~l~~~~~~~~ 297 (465)
++.|...+++.... +.. + ....+..+...+...|++++|...+++... + ....+..+...+...|
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 99999998876653 211 1 223345566677788999999988876532 1 1234445666788899
Q ss_pred ChHHHHHHHHHHHHCC--CCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---hhhHHHHHHHHHhcC
Q 012360 298 LGNEALRVFYQMERKG--IKPNEA--T-F-VSVLAACRHSGLITEGCQLFRRMGGVYRVQPT---IEHFVCLVDLLSRAG 368 (465)
Q Consensus 298 ~~~~a~~~~~~m~~~g--~~p~~~--~-~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 368 (465)
+++.|...+.+..... ...... . . ...+..+...|+.+.|..++...... ..... ...+..+..++...|
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcC
Confidence 9999999988875421 111110 1 1 11223445578999999998876642 11111 111346777888999
Q ss_pred CHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 369 LLYQAEEFIKIMPA----ED----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 369 ~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
++++|...+++... .+ ...+...+..++...|+.++|...+.++++....
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 99999999887643 11 1235566777888999999999999999997743
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=2.2e-05 Score=74.04 Aligned_cols=308 Identities=14% Similarity=0.101 Sum_probs=171.9
Q ss_pred CcchhhhHHHHHHHccCChHHHHHHhccCCC-----------CCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 012360 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPF-----------RDV-GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVAD 83 (465)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 83 (465)
.+..+|..+...+.+..+.+-|.-.+-.|.. .|. ..--.........|..++|..+|++.++.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 4566889999999998888888877776651 111 22222333345779999999999988763
Q ss_pred hhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCC----------------
Q 012360 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS---------------- 147 (465)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------- 147 (465)
..+=..|-..|.+++|.++-+.-.+..+ ..+|.....-+-..+|.+.|++.|++.+.
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 3344556677888888887654333221 23455556666677888888888887621
Q ss_pred ------CCCchhHHHHHHHHHhcCChHHHHHHHHHhhc------------------------CChHHHHHHHHHHHHcCC
Q 012360 148 ------RRNIVSLNILINGYIDMELVDLAREVFDEIVD------------------------KDIVLWRSMMHGCVKAKQ 197 (465)
Q Consensus 148 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~~l~~~~~~~g~ 197 (465)
..|...|.-....+-..|+.+.|+.+|..... .|......+.+.|-..|+
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD 982 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH
Confidence 12333444444555567888888887766522 144445556666666777
Q ss_pred hhHHHHHHHHHHHcC--C------CCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 012360 198 PEEALELFKKMIDEG--V------TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269 (465)
Q Consensus 198 ~~~a~~~~~~~~~~~--~------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (465)
+.+|..+|.+..... + ..+...++.. ..+...+.-.|..+|++.- . -+..-+..|-+.|.+.
T Consensus 983 v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nla--l~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~ 1052 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLA--LMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIG 1052 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--hhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchH
Confidence 777777666543210 0 0001111110 1122223333444444321 0 1122345566777777
Q ss_pred HHHHHHhcCCC--------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----------C------------
Q 012360 270 EALVTFYKTDC--------------KDVVTWTTMIEGLANYGLGNEALRVFYQMERK----------G------------ 313 (465)
Q Consensus 270 ~a~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----------g------------ 313 (465)
+|+++--+-.+ .|+...+.-...++.+.++++|..++-..++. |
T Consensus 1053 kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mT 1132 (1416)
T KOG3617|consen 1053 KALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMT 1132 (1416)
T ss_pred HHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcC
Confidence 77655422211 24555555555666666666666554433211 1
Q ss_pred ----CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 314 ----IKPNEA----TFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 314 ----~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
-.|+.. ....+...|.++|.+..|-+-|.++-
T Consensus 1133 p~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1133 PTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred cCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 122222 34555566777777777766665553
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=3.9e-05 Score=74.10 Aligned_cols=343 Identities=11% Similarity=0.081 Sum_probs=239.9
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--chhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHH
Q 012360 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVA--DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125 (465)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (465)
|+..-+..+.++...+-+.+-++++++..-.+-.. +...-+.++-...+ -+...+.+..+++...+ .| .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------hH
Confidence 55556667777778888888888888776422111 11122333332222 23344445554444322 11 23
Q ss_pred HHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHH
Q 012360 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205 (465)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 205 (465)
.......+-+++|..+|++. ..+..+.+.|+. .-++++.|.+.-++..+| ..|..+..+-.+.|...+|++-|
T Consensus 1055 a~iai~~~LyEEAF~ifkkf--~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF--DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh--cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHH
Confidence 44455667788888888887 334444444443 346777787777776654 57889999999999999999877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhh
Q 012360 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285 (465)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 285 (465)
-+. -|...|..++..+.+.|.+++-..++....+....|.. -+.++-+|++.+++.+..+++. .||...
T Consensus 1128 ika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~ 1196 (1666)
T KOG0985|consen 1128 IKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVAN 1196 (1666)
T ss_pred Hhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchh
Confidence 443 25668999999999999999999999988887656544 4578999999999988877754 477777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
...+..-|...+.++.|.-+|.. ..-|..|...+...|++..|...-+++ .+..+|..+-.+|.
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACV 1260 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHh
Confidence 88888889999999988877763 345777888888889998887765554 34678888888888
Q ss_pred hcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
..+.+.-|.-.=-.+. -...-...++..|...|-+++-+.+++..+.+...+...|..|+..|++-.
T Consensus 1261 d~~EFrlAQiCGL~ii--vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1261 DKEEFRLAQICGLNII--VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred chhhhhHHHhcCceEE--EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 8776655432100000 123346778889999999999999999988888777788888888887653
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.84 E-value=3.7e-07 Score=90.17 Aligned_cols=199 Identities=11% Similarity=0.103 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhccchhhHhHHHHHHHHHHc-CCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-C-hhhHHHHH
Q 012360 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQD---AFVKTALIDMYSKCGSLEEALVTFYKTDCK-D-VVTWTTMI 290 (465)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~l~ 290 (465)
...|...|......++.++|.++.++++.. ++.-. ..+|.+++..-..-|.-+...++|+++.+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 344555555555666666666666665542 11111 224444555444455555555666555432 2 23455556
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCH
Q 012360 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 370 (465)
..|.+.+.+++|.++++.|.++ +......|...+..+.+..+-+.|..++.++.+...-..........+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6666666666666666666554 223445555556666666666666666666553210011233334444455556666
Q ss_pred HHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 371 YQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 371 ~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
+++..+|+.... .| ....|+.++..-.++|+.+.+..+|++++.++
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 666666655433 22 44556666666666666666666666666654
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=6.9e-08 Score=74.56 Aligned_cols=108 Identities=11% Similarity=0.026 Sum_probs=92.5
Q ss_pred HHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
..++++..+ ..|+. +..+...+...|++++|...|+.... +.+...|..+..++...|++++|+..|+++++.
T Consensus 13 ~~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 355666663 34543 55678889999999999999998754 347788999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 416 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+|.++..+..++.++.+.|++++|...+++..+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999886654
No 110
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=6.3e-06 Score=67.26 Aligned_cols=251 Identities=11% Similarity=0.054 Sum_probs=158.5
Q ss_pred HHHhcCChHHHHHHHHHh-hc-CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhH-
Q 012360 160 GYIDMELVDLAREVFDEI-VD-KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG- 236 (465)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a- 236 (465)
-+.-.|++..++..-... .. .+...-..+.++|...|++.....-. .. |-.|....+..+.......++.+.-
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchhHHHH
Confidence 334445555554433332 11 23333344556677676655443322 11 1233444444444444444444333
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 012360 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316 (465)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 316 (465)
..+.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+-|...+++|.+- .
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---d 167 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---D 167 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---c
Confidence 3444555555444444444555667888899999998888733 3333333345566777889999999999864 3
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC--CccchHH
Q 012360 317 NEATFVSVLAACRH----SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE--DKFISYK 390 (465)
Q Consensus 317 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 390 (465)
+..|.+.|..++.+ .+....|.-+|+++.+ ..+|+..+.+-...++...|++++|..++++...+ .++.+..
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 56788878877764 4568899999999986 56888889998899999999999999999887653 3677777
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHHhCCCCch
Q 012360 391 ALLSACITYSEF-DLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 391 ~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~~ 421 (465)
.++.+-...|.. +-..+.+.+.....|..+.
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 777666666655 4455677777777787764
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=1.7e-07 Score=86.57 Aligned_cols=193 Identities=13% Similarity=0.083 Sum_probs=111.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012360 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328 (465)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 328 (465)
+|-...-..+...+.+.|-...|..+|++. ..|.-.+.+|...|+..+|..+..+..++ +|++..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 444445566777777778888888777653 35666777777777777777777776664 66777777666665
Q ss_pred HhcCCHHHHHHHHHHhhcCC--------------------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 329 RHSGLITEGCQLFRRMGGVY--------------------------RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
....-+++|.++.+....+- -.+....+|..+..+..+.++++.|.+.|..-..
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 55444555555554433210 1112334444455555555555555555544322
Q ss_pred -C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 383 -E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 383 -~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
. .+...||++-.+|.+.++-.+|...++++.+.+-.+..+|.+........|.+++|.+.++++.+
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 2 24445555555555555555555555555555555555555555555555555555555555543
No 112
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=4.4e-06 Score=73.45 Aligned_cols=145 Identities=10% Similarity=-0.051 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc---CCH----HH
Q 012360 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA---GLL----YQ 372 (465)
Q Consensus 300 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~ 372 (465)
+++..+++++.+.. +-|..+|.....++...|+++++++.++++.+. -+.+...|+.....+.+. |.. ++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHH
Confidence 45666666666552 224566666666666777777777777777753 233445555554444443 222 34
Q ss_pred HHHHHHh-CCCCC-ccchHHHHHHHHHhc----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC------------
Q 012360 373 AEEFIKI-MPAED-KFISYKALLSACITY----SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG------------ 434 (465)
Q Consensus 373 A~~~~~~-~~~~~-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------ 434 (465)
+.+...+ +...| +...|+.+...+... +...+|.+.+.+..+.+|.++.++..|++.|....
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 5555533 33344 677788877777663 44567888888888888888888899999888642
Q ss_pred ------ChHHHHHHHHHHH
Q 012360 435 ------HWTEVAEARRNMK 447 (465)
Q Consensus 435 ------~~~~a~~~~~~~~ 447 (465)
..++|.++++.+.
T Consensus 282 ~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cccccccHHHHHHHHHHHH
Confidence 2366888888773
No 113
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.80 E-value=1e-05 Score=77.85 Aligned_cols=419 Identities=13% Similarity=0.044 Sum_probs=250.6
Q ss_pred hhhhHHHHHHHccCChHHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCchhhHHHHHHHh
Q 012360 19 YVGNSLIHFYGRMALFTDARVLFDKMPF---RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG-IVADKITLVILFSAC 94 (465)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~ 94 (465)
..|..|-+.|+...+...|.+.|+..-+ .+..++..+.+.|++..+++.|..+.-..-+.. ...-...|....-.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4788888888888888899999987663 466788889999999999999998843332221 011112233344456
Q ss_pred cchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHHHH--HHHHHhcCChHHHH
Q 012360 95 ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNIL--INGYIDMELVDLAR 171 (465)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l--~~~~~~~~~~~~a~ 171 (465)
...++...+..-|+...+.. +.|...|..++.+|.+.|++..|.++|.+. ..+|+. +|... ....+..|.+.+|.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s-~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS-KYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-HHHHHHHHHHHHHhhhHHHHH
Confidence 67888888888888888765 567788999999999999999999999888 344433 33332 34456788999999
Q ss_pred HHHHHhhcC----------ChHHHHHHHHHHHHcCChhHHHHHHHHHH-------HcCCCCCHHHHHHHHHHh-------
Q 012360 172 EVFDEIVDK----------DIVLWRSMMHGCVKAKQPEEALELFKKMI-------DEGVTPDEEVMVSVLSAC------- 227 (465)
Q Consensus 172 ~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~~ll~~~------- 227 (465)
..+..+... -..++-.+...+...|-...|..++++-+ ......+...+..+-.+|
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 888877332 11122222222333333333333333322 111111111121111111
Q ss_pred ----------------ccchhh---H---hHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cC----CHHHHHHHHhc
Q 012360 228 ----------------SSLSNL---Q---YGRLVHRFILQNNITQDAFVKTALIDMYSK----CG----SLEEALVTFYK 277 (465)
Q Consensus 228 ----------------~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~a~~~~~~ 277 (465)
.+.+.. + .+.+.+-.-. ....+..+|..++..|.+ .+ +...|+..+.+
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 111111 1 0000000000 111123334344433333 11 22355666655
Q ss_pred CC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-
Q 012360 278 TD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP- 352 (465)
Q Consensus 278 ~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 352 (465)
.. ..+...|+.|.-. ...|++.-|...|-+-... .| +..+|..+.-.+.+..+++.|...|...+. +.|
T Consensus 809 aV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS---LdP~ 882 (1238)
T KOG1127|consen 809 AVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS---LDPL 882 (1238)
T ss_pred HHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccHHHhhHHHHhhhh---cCch
Confidence 43 2456677777665 5567777777777665554 34 456777777778888999999999998873 344
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHh---C--CC--CCccchHHHHHHHHHhcCChHHHHH----------HHHHHHHh
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKI---M--PA--EDKFISYKALLSACITYSEFDLGKK----------VANNMMKL 415 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~---~--~~--~~~~~~~~~l~~~~~~~~~~~~a~~----------~~~~~~~~ 415 (465)
+...|..........|+.-++..+|.. . .. -++...|..........|++++-+. .+++....
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~ 962 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLG 962 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc
Confidence 555565555555667888888887764 1 11 1233344443334445665554443 44445556
Q ss_pred CCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 416 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
.|+...+|...+....+.+.+.+|.+...+..
T Consensus 963 ~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 963 HPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999888777653
No 114
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.78 E-value=4e-06 Score=80.49 Aligned_cols=374 Identities=12% Similarity=0.017 Sum_probs=219.0
Q ss_pred ChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHH
Q 012360 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143 (465)
Q Consensus 64 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 143 (465)
+...|+..|-+..+... -=...|..+...|....+...|.+.|....+.+ ..+........+.|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 36666666666555321 122468888888888888889999998887764 4566677888999999999999999854
Q ss_pred hhCCC-C---CchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 012360 144 EMGSR-R---NIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216 (465)
Q Consensus 144 ~~~~~-~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 216 (465)
..+.. | -...|....-.|.+.++...|...|+...+ .|...|..++.+|...|++..|.++|.+... ++|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence 44211 1 112344445566788899999999988754 3667888899999999999999999998877 4555
Q ss_pred HHHHHHHH--HHhccchhhHhHHHHHHHHHHc------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------
Q 012360 217 EEVMVSVL--SACSSLSNLQYGRLVHRFILQN------NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-------- 280 (465)
Q Consensus 217 ~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------- 280 (465)
.. |...- ..-+..|.+.++...+..+... +...-..++..+...+...|-..+|..++++..+
T Consensus 629 s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 SK-YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred hH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33 32222 2246788888888888876543 1111223333333334444444444444443221
Q ss_pred ---CChhhHHHHHHHHHH---cC--ChH-HHHHHH-HHHHHCCCCC--------------------CHHHHHHHHHHHHh
Q 012360 281 ---KDVVTWTTMIEGLAN---YG--LGN-EALRVF-YQMERKGIKP--------------------NEATFVSVLAACRH 330 (465)
Q Consensus 281 ---~~~~~~~~l~~~~~~---~~--~~~-~a~~~~-~~m~~~g~~p--------------------~~~~~~~l~~~~~~ 330 (465)
.+...|-.+..+|.- .. -+. ....++ .+....+.-| +..+|..++..|.+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 122233332222211 00 000 001111 1122222221 22233333333322
Q ss_pred ----c----CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCccchHHHHHHHHHhcC
Q 012360 331 ----S----GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP--AEDKFISYKALLSACITYS 400 (465)
Q Consensus 331 ----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 400 (465)
. .+...|+..+.+..+ -...+..+|+.|.-+ ...|.+.-|..-|-+-. .+....+|..+...+.+..
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 1 122345566665553 123344455555433 44456655555443322 2335666777777777778
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 401 EFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 401 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
+++-|...+.+.+.+.|.+...|...+......|+.-++..+|..
T Consensus 865 d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 888888888888888888877777777777777777777776664
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.77 E-value=1.8e-06 Score=70.33 Aligned_cols=155 Identities=11% Similarity=0.065 Sum_probs=106.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh
Q 012360 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366 (465)
Q Consensus 287 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (465)
..+-..+...|+-+....+....... ..-|......++....+.|++..|...+.++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44445566666666666666554332 122334445566777777777777777777774 456677777777777777
Q ss_pred cCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 012360 367 AGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
.|+++.|..-|.+..+ ..++...+.+...+.-.|+.+.|..++.......+.+..+-..|..+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888777777766543 23566677777777777888888888877777777777777777777777888777776554
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=8.2e-07 Score=80.11 Aligned_cols=247 Identities=13% Similarity=0.031 Sum_probs=172.6
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 012360 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270 (465)
Q Consensus 191 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (465)
-+.+.|++.+|.-.|+..++... -+...|..|-......++-..|+..+++..+.. +.+......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 35677778888777877776532 256677777767777777777777777777764 4456677777777887777777
Q ss_pred HHHHHhcCCCCC-hhhHHHHH---------HHHHHcCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012360 271 ALVTFYKTDCKD-VVTWTTMI---------EGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQ 339 (465)
Q Consensus 271 a~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 339 (465)
|+..|++-.... ...|.... ..+..........++|-++ ...+..+|+.....|.-.|.-.|++++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 877776532100 00000000 1111122233444555444 445545788888888888999999999999
Q ss_pred HHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 340 LFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 340 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.|+.+.. +.| |..+||.|.-.+....+..+|+..|++... +| -+.++..|.-+|+..|.+++|.+.|-.++.+.
T Consensus 452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999995 345 688999999999999999999999998765 45 56777888999999999999999999998854
Q ss_pred CC-----C-----chhHHHHHHHHhhcCChHHHHHH
Q 012360 417 NQ-----S-----HEAYVLLSNFYALEGHWTEVAEA 442 (465)
Q Consensus 417 p~-----~-----~~~~~~l~~~~~~~g~~~~a~~~ 442 (465)
+. . ..+|..|=.++.-.++.+-+..+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 33 1 24677777777777777754443
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.74 E-value=1.4e-06 Score=71.20 Aligned_cols=152 Identities=12% Similarity=0.112 Sum_probs=114.3
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012360 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338 (465)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 338 (465)
+-.|...|+++.+....+....+. ..+...++.+++...+++..+.. +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445667777766654443322221 01122566778888888877662 446788999999999999999999
Q ss_pred HHHHHhhcCCCCCCChhhHHHHHHHH-HhcCC--HHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHH
Q 012360 339 QLFRRMGGVYRVQPTIEHFVCLVDLL-SRAGL--LYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMM 413 (465)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (465)
..|+++.+. .+.+...+..+..++ ...|+ .++|.+++++... .| +...+..+...+...|++++|+..|++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999853 244677888888864 67777 5999999998765 34 77889999999999999999999999999
Q ss_pred HhCCCCch
Q 012360 414 KLGNQSHE 421 (465)
Q Consensus 414 ~~~p~~~~ 421 (465)
+..|++..
T Consensus 172 ~l~~~~~~ 179 (198)
T PRK10370 172 DLNSPRVN 179 (198)
T ss_pred hhCCCCcc
Confidence 99977666
No 118
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.73 E-value=0.00017 Score=65.11 Aligned_cols=147 Identities=5% Similarity=0.039 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 012360 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFI 377 (465)
Q Consensus 299 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 377 (465)
.+.....++++...-..--..+|..+++.-.+..-.+.|..+|.++.+. +..+ .+.+.+++++-|+ .++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 3444444544443321112234555555555666666666666666654 3333 4555555555443 35566666666
Q ss_pred Hh-CCCCCccch-HHHHHHHHHhcCChHHHHHHHHHHHHhC--C-CCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 378 KI-MPAEDKFIS-YKALLSACITYSEFDLGKKVANNMMKLG--N-QSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 378 ~~-~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+- +..-+|... -...+..+...++-..+..+|++.+... | ....+|..++.--+.-|+.+.+.++-+++.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 54 222233332 2444555556666666666666666652 1 122356666666666666666666655443
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=1.5e-06 Score=70.82 Aligned_cols=134 Identities=11% Similarity=0.073 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHH
Q 012360 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKAL 392 (465)
Q Consensus 315 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 392 (465)
.|+......+-..+...|+-+....+...... ..+.+......++....+.|++..|...+++... ++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55433335666778888998888888888764 3345666777799999999999999999998754 5689999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.-+|.+.|++++|..-|.++.++.|.++.+++.++..+.-.|+++.|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999998776543
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=2.5e-05 Score=72.86 Aligned_cols=226 Identities=10% Similarity=0.079 Sum_probs=173.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchh
Q 012360 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232 (465)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 232 (465)
.-..+...+...|-...|..+|+++. .|..++.+|...|+..+|..+..+..+ -+||...|..+........-
T Consensus 400 ~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 34567778888999999999998764 577788899999999999999888877 47888889888888888888
Q ss_pred hHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 012360 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQM 309 (465)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 309 (465)
+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ -...+|-.+..+..+.+++..|.+.|..-
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 88888888765432 222233334457899999999986443 34568888888888999999999999988
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC
Q 012360 310 ERKGIKPNE-ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED 384 (465)
Q Consensus 310 ~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 384 (465)
... .|+. ..|+.+-.+|.+.++..+|...++++.+. + ..+...|...+-.....|.+++|.+.+.++.. ..
T Consensus 546 vtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 546 VTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred hhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 866 6764 68999999999999999999999999864 4 44556777777788899999999999887644 12
Q ss_pred ccchHHHHHHHH
Q 012360 385 KFISYKALLSAC 396 (465)
Q Consensus 385 ~~~~~~~l~~~~ 396 (465)
|..+...++...
T Consensus 622 d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 622 DDEVLLIIVRTV 633 (777)
T ss_pred cchhhHHHHHHH
Confidence 444444444443
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=2.3e-06 Score=82.93 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=76.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH
Q 012360 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE-ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360 (465)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 360 (465)
++..+..|.....+.|++++|..+++...+. .|+. .....+..++.+.+++++|...+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3455555666666666666666666666655 4543 3445555666666666666666666664 223344445555
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
..++.+.|++++|..+|+++.. .| +..++..+..++.+.|+.++|...|+++++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5666666666666666666543 22 34556666666666666666666666666654
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.70 E-value=3.3e-08 Score=54.31 Aligned_cols=32 Identities=25% Similarity=0.556 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 012360 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344 (465)
Q Consensus 313 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 344 (465)
|+.||..||+.+|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=1.2e-05 Score=80.11 Aligned_cols=200 Identities=12% Similarity=0.072 Sum_probs=113.6
Q ss_pred cchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCC-----CchhHHHHHHHHHhcCChHHHHHHHHHhhcC-C-hHHHHH
Q 012360 117 YMLNMENALLLMYAKCKEMDEALRLFDEM--GSRR-----NIVSLNILINGYIDMELVDLAREVFDEIVDK-D-IVLWRS 187 (465)
Q Consensus 117 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~ 187 (465)
.+...|-..|......++.++|.++.++. .+.+ -...|.++++.-...|.-+...++|++..+- | ...|..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLK 1535 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHH
Confidence 33445666666666677777777776666 2211 1224555555555556566666666666442 2 245666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcC
Q 012360 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT-QDAFVKTALIDMYSKCG 266 (465)
Q Consensus 188 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 266 (465)
|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.+.++.-.. -......-.+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 666666666666666666666654 2234455666666666666666666666666553211 12333444445555666
Q ss_pred CHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012360 267 SLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317 (465)
Q Consensus 267 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 317 (465)
+.+.+..+|+.... .-...|+..+..-.++|+.+.+..+|++....++.|-
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 66666666665442 2344566666666666666666666666666655553
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=2.8e-05 Score=69.22 Aligned_cols=138 Identities=12% Similarity=0.050 Sum_probs=95.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhc
Q 012360 290 IEGLANYGLGNEALRVFYQMERKGIKPNEA-TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRA 367 (465)
Q Consensus 290 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 367 (465)
...+...|++++|+..++.+.+. .|+.. ........+.+.++.++|.+.++++... .|+ ....-.+.++|.+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhc
Confidence 33455667888888888888776 56544 4444557788888888888888888743 454 55556777888888
Q ss_pred CCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 368 GLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 368 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
|++.+|..+++.... +.|+..|..|..+|...|+..++..... ..|...|++++|...+..
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMR 450 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHH
Confidence 888888888876543 3377788888888888888777765444 345555666666666655
Q ss_pred HHHh
Q 012360 446 MKEL 449 (465)
Q Consensus 446 ~~~~ 449 (465)
.++.
T Consensus 451 A~~~ 454 (484)
T COG4783 451 ASQQ 454 (484)
T ss_pred HHHh
Confidence 5443
No 125
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.66 E-value=1.1e-06 Score=74.81 Aligned_cols=181 Identities=12% Similarity=-0.008 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC-C-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Chh---hHH
Q 012360 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT-Q-DAFVKTALIDMYSKCGSLEEALVTFYKTDC--K-DVV---TWT 287 (465)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~---~~~ 287 (465)
....+..+...+...|+++.|...++++...... | ....+..+..++...|++++|...++++.+ | +.. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556777778889999999999999999876421 1 124667888999999999999999998763 3 222 455
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH
Q 012360 288 TMIEGLANY--------GLGNEALRVFYQMERKGIKPNEA-TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358 (465)
Q Consensus 288 ~l~~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 358 (465)
.+..++... |++++|.+.++++.+. .|+.. ....+..... ... .. .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~-------~~--------~~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN-------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH-------HH--------HHHHH
Confidence 555666554 7789999999999877 56542 2222211110 000 00 01112
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 359 CLVDLLSRAGLLYQAEEFIKIMPA-ED----KFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 359 ~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
.+...+.+.|++++|...++.... .| ....+..++.++...|++++|..+++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456678888999999888887643 22 235678888888899999999988888776655
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=6.7e-06 Score=67.11 Aligned_cols=244 Identities=10% Similarity=0.026 Sum_probs=158.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 012360 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
++-+.-.|.+..++..-....... -+...-.-+-++|...|.+.... .++.... .|....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 344555677777777665544321 23334444555666666554332 2222222 33344444444444444444
Q ss_pred HHHHHHH-hcCCCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012360 269 EEALVTF-YKTDCK----DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343 (465)
Q Consensus 269 ~~a~~~~-~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 343 (465)
+.-..-+ +.+..+ +......-...|+..+++++|++...... +......=+..+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333322 233322 22222333456889999999999887621 333333445667788899999999999
Q ss_pred hhcCCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 344 MGGVYRVQPTIEHFVCLVDLLSR----AGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
|.+- .+..+.+.|..++.+ .+...+|.-+|+++.. .|.+.+.+....++...|++++|..+++.++...+
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9852 445566666666654 5678999999999976 56888888899999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCChHHHH-HHHHHHHH
Q 012360 418 QSHEAYVLLSNFYALEGHWTEVA-EARRNMKE 448 (465)
Q Consensus 418 ~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 448 (465)
.++.+...++.+-...|+-.++. +.+.+++.
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999998888899876643 45555543
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=7.6e-06 Score=79.40 Aligned_cols=129 Identities=10% Similarity=0.090 Sum_probs=80.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 012360 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--K-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE-ATFVSV 324 (465)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l 324 (465)
+.+...+..|.......|.+++|..+++...+ | +......+...+.+.+++++|....++.... .|+. .....+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 44466666666666677777777777666542 3 3445555666666677777777777666665 4443 445555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
..++.+.|++++|..+|+++... .+-+...+..+..++...|+.++|...|++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56666667777777777776642 22335566666666667777777777666654
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.61 E-value=6.6e-07 Score=68.81 Aligned_cols=99 Identities=12% Similarity=0.075 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHh
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACIT 398 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 398 (465)
...+...+...|++++|...++.+... .+.+...+..+...+...|++++|...++.... +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 334444455555555555555555431 123444445555555555555555555544322 1233444445555555
Q ss_pred cCChHHHHHHHHHHHHhCCCCch
Q 012360 399 YSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.|++++|...++++++..|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccch
Confidence 55555555555555555554443
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.60 E-value=1.8e-05 Score=77.78 Aligned_cols=166 Identities=11% Similarity=0.078 Sum_probs=75.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCchh-HHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 012360 119 LNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIVS-LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196 (465)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 196 (465)
...+..|+..+...+++++|.++.+.. ...|+... |..+...+.+.++.+.+.-+ .++..+....
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 445556666666666666666666544 33333322 22222233344443322211 2233333333
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 012360 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276 (465)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 276 (465)
++.-+..+...+.+. .-+...+..+..+|-+.|+.+++..+++++++.. +-++.+.|.+...|... ++++|.+++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 343333333333332 1223344455555555555555555555555554 34455555555555555 5555555443
Q ss_pred cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012360 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312 (465)
Q Consensus 277 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 312 (465)
+. +..+...+++..+.++|.++...
T Consensus 174 KA-----------V~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 174 KA-----------IYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HH-----------HHHHHhhhcchHHHHHHHHHHhc
Confidence 31 12244444555555555555443
No 130
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.57 E-value=7.1e-07 Score=67.65 Aligned_cols=98 Identities=8% Similarity=0.056 Sum_probs=83.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
+......+...+...|++++|.++|+-+.. .| +...|..|..++...|++++|+..|..+..++|+++.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 344555667778889999999999987644 33 6778899999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHHhc
Q 012360 431 ALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 431 ~~~g~~~~a~~~~~~~~~~~ 450 (465)
...|+.+.|++.|+......
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999776543
No 131
>PLN02789 farnesyltranstransferase
Probab=98.56 E-value=0.00011 Score=64.72 Aligned_cols=226 Identities=12% Similarity=0.045 Sum_probs=111.4
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhccch-hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH--
Q 012360 193 VKAKQPEEALELFKKMIDEGVTPDE-EVMVSVLSACSSLS-NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL-- 268 (465)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 268 (465)
...++.++|+.++.++++. .|+. .+++..-.++...| +++++...++.+.+.+ +.+..+|+....++.+.|+.
T Consensus 48 ~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 48 ASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 3344555555555555542 2222 22222222222333 3455555555555443 22233344333333333332
Q ss_pred HHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HHHHH
Q 012360 269 EEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS---GL----ITEGC 338 (465)
Q Consensus 269 ~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---~~----~~~a~ 338 (465)
++++.+++++. ..|..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |. .++.+
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 44455554443 234556666666666667777777777777665422 334444444333332 22 23455
Q ss_pred HHHHHhhcCCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcC------------
Q 012360 339 QLFRRMGGVYRVQPTIEHFVCLVDLLSRA----GLLYQAEEFIKIMPA-ED-KFISYKALLSACITYS------------ 400 (465)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~------------ 400 (465)
....++.. ..+-+...|+.+...+... ++..+|.+++.+... ++ +......|+..|+...
T Consensus 204 ~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 204 KYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 55555553 2234566666666666552 334556666655433 22 4445556666665421
Q ss_pred ------ChHHHHHHHHHHHHhCCCCchhHH
Q 012360 401 ------EFDLGKKVANNMMKLGNQSHEAYV 424 (465)
Q Consensus 401 ------~~~~a~~~~~~~~~~~p~~~~~~~ 424 (465)
..++|.++++.+.+.+|-....|.
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred cccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 336677777777555565555333
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.52 E-value=3e-06 Score=75.94 Aligned_cols=123 Identities=12% Similarity=0.121 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHH
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACI 397 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~ 397 (465)
....|+..+...++++.|+.+++++.+. .|+ ....+++.+...++..+|.+++++... .| +...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455666677788999999999999864 355 445688888888999999999887654 33 5556666777888
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 398 TYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
..++++.|+++.+++++..|.+..+|..|+.+|.+.|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998775
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.52 E-value=0.00013 Score=72.04 Aligned_cols=233 Identities=8% Similarity=0.024 Sum_probs=110.1
Q ss_pred hHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcC
Q 012360 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME 165 (465)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (465)
.+..|+..+...+++++|.++.+...+.. +.....|-.+...+.+.++.+.+..+ .+ +.......
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~------------l~~~~~~~ 97 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NL------------IDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hh------------hhhccccc
Confidence 45556666666666666666666554432 22222233333345555554444433 11 12222222
Q ss_pred ChHHHHHHHHHhhc--CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHH
Q 012360 166 LVDLAREVFDEIVD--KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243 (465)
Q Consensus 166 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (465)
++.....+...+.. .+...+..+..+|-+.|+.++|.+.++++++.. +-|..+.+.+...++.. ++++|..++.+.
T Consensus 98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 98 KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 22222222222211 133355556666666666666666666666654 33455556666666555 666666666655
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHH
Q 012360 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK-GIKPNEATFV 322 (465)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~ 322 (465)
+.. +...+++..+.+++.++..-++.- .+.-..+.+++... |..--..++.
T Consensus 176 V~~---------------~i~~kq~~~~~e~W~k~~~~~~~d-------------~d~f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 176 IYR---------------FIKKKQYVGIEEIWSKLVHYNSDD-------------FDFFLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred HHH---------------HHhhhcchHHHHHHHHHHhcCccc-------------chHHHHHHHHHHhhhccchhHHHHH
Confidence 443 344445555666555544332221 12222222222222 1122233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
.+...|...+++++++.+++.+.+. -+.|......++.+|.
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 4555566666666666666666632 1223444444444443
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=2e-05 Score=70.17 Aligned_cols=164 Identities=16% Similarity=0.058 Sum_probs=121.3
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH
Q 012360 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360 (465)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 360 (465)
++...+...+.+......-..+..++.+-.+. .-...-|.. ...+...|.+++|+..++.+.. ..+-|+......
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~ 346 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELA 346 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHH
Confidence 34455555555444333333333333322221 112233433 3345577999999999999986 444566667788
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CCc-cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHH
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA-EDK-FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 438 (465)
.+.+.+.++.++|.+.++++.. .|+ ...+-.+..++.+.|++.+|+.+++......|+++..|..|+.+|...|+..+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 8999999999999999998865 454 66778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 012360 439 VAEARRNMKEL 449 (465)
Q Consensus 439 a~~~~~~~~~~ 449 (465)
+.....+....
T Consensus 427 a~~A~AE~~~~ 437 (484)
T COG4783 427 ALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHHHh
Confidence 99888766543
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.48 E-value=0.00092 Score=60.62 Aligned_cols=425 Identities=11% Similarity=0.067 Sum_probs=247.4
Q ss_pred CCcchhhhHHHHHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 012360 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILF 91 (465)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 91 (465)
+-|+..|+.||.-+... ..++++.+++++..+ ....|..-|..-.+.++++....+|.+....-+ +...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 56888999999988877 899999999998733 667899999999999999999999999877633 444554444
Q ss_pred HHhcc-hhhhhh----hhHHHHHHH-HhCCcc-chhhHHHHHHH---------HHhCCChHHHHHHHHhhCCCCC-----
Q 012360 92 SACAR-LEKLHY----GKTVHCYAT-KVGLEY-MLNMENALLLM---------YAKCKEMDEALRLFDEMGSRRN----- 150 (465)
Q Consensus 92 ~~~~~-~~~~~~----a~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~----- 150 (465)
.---+ .++... ..+.|+-.. +.|..+ +..+|+..+.. |....+++...+++.++-..|=
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 32221 122222 223333333 334332 23345555443 2334456677788888733431
Q ss_pred ----chhHHHHHHHHH-------hcCChHHHHHHHHHhhc------C--------C-------hHHHHHHHHHHHHcCC-
Q 012360 151 ----IVSLNILINGYI-------DMELVDLAREVFDEIVD------K--------D-------IVLWRSMMHGCVKAKQ- 197 (465)
Q Consensus 151 ----~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~------~--------~-------~~~~~~l~~~~~~~g~- 197 (465)
-.+|..=|+... +...+..|.++++++.. . . +..|-.+|.--..++-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 112211111111 23345555555555411 0 0 0112222221111110
Q ss_pred -------hhHHHHHHHHH-HHcCCCCCHHHHH-HHH----HHhccchh-------hHhHHHHHHHHHHcCCCCChhHHHH
Q 012360 198 -------PEEALELFKKM-IDEGVTPDEEVMV-SVL----SACSSLSN-------LQYGRLVHRFILQNNITQDAFVKTA 257 (465)
Q Consensus 198 -------~~~a~~~~~~~-~~~~~~~~~~~~~-~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (465)
.....-.+++. .-.+..|+..... ..+ +.+...|+ .+++..+++...+.-...+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111122221 1123333322111 011 11222232 3455556665554332333334433
Q ss_pred HHHHHHhcC---CHHHHHHHHhcCCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 012360 258 LIDMYSKCG---SLEEALVTFYKTDC----KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACR 329 (465)
Q Consensus 258 l~~~~~~~~---~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 329 (465)
+...--..- ..+.....+++... .-..+|..++..-.+..-...|..+|.+..+.+..+ +...+.+++.-+|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 333221111 24444455544332 233477788888888889999999999999998877 5567777777666
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC-----ccchHHHHHHHHHhcCChHH
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED-----KFISYKALLSACITYSEFDL 404 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~ 404 (465)
. ++.+-|.++|+--.+.++ .++......++-+...++-..|..+|++..... ....|..++.--..-|+...
T Consensus 414 s-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 414 S-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred c-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 5 889999999998886543 344455677888899999999999999886541 44789999999999999999
Q ss_pred HHHHHHHHHHhCCCCc----hhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 405 GKKVANNMMKLGNQSH----EAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 405 a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
+.++-++....-|.+. ..-..+++-|.-.+.+..-..-++.
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 9999998888666221 1244556666666665554444433
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.48 E-value=4.6e-06 Score=64.11 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=86.3
Q ss_pred HHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 340 LFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 340 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.++++.. .+| +......+...+...|++++|.+.++.+.. +.+...|..+...+...|++++|...++++++.+
T Consensus 5 ~~~~~l~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG---LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc---CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455553 234 445566777888889999999999888644 3366778888888888999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 417 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
|+++..+..++..+...|++++|...+++..+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9998889999999999999999999998776654
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=3.7e-05 Score=62.44 Aligned_cols=192 Identities=12% Similarity=0.066 Sum_probs=108.0
Q ss_pred hhHhHHHHHHHHHH---cC-CCCChh-HHHHHHHHHHhcCCHHHHHHHHhcCCC--CChh-hHHHHHHHHHHcCChHHHH
Q 012360 232 NLQYGRLVHRFILQ---NN-ITQDAF-VKTALIDMYSKCGSLEEALVTFYKTDC--KDVV-TWTTMIEGLANYGLGNEAL 303 (465)
Q Consensus 232 ~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~ 303 (465)
+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|..+++.+.. |+.. .-..-...+-..|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 44555555555443 12 333333 344555555666777777666665442 2221 1111122233456777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 012360 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA- 382 (465)
Q Consensus 304 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 382 (465)
++++.+.+.. +.|..++..=+...-..|+..+|++-+.+..+ .+..|...|..+.+.|...|++++|.-.++++.-
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 7777777663 22445555555555556666677776666665 4556777777777777777777777777776532
Q ss_pred CC-ccchHHHHHHHHHhcC---ChHHHHHHHHHHHHhCCCCchhHHHH
Q 012360 383 ED-KFISYKALLSACITYS---EFDLGKKVANNMMKLGNQSHEAYVLL 426 (465)
Q Consensus 383 ~~-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~l 426 (465)
.| ++..+..+...+...| +.+.|.++|.+++++.|.+...+..+
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 44 4444555555544333 56667777777777777554434333
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.42 E-value=0.0021 Score=61.96 Aligned_cols=410 Identities=15% Similarity=0.106 Sum_probs=232.4
Q ss_pred HccCChHHHHHHhccCCC--CCcccHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhh
Q 012360 29 GRMALFTDARVLFDKMPF--RDVGSWNTLMSI--YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104 (465)
Q Consensus 29 ~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 104 (465)
...+++.+|....+.+.+ ||. .|...+.+ +.+.|+.++|..+++.....+.. |..|...+-..|...+..++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 346788888888877653 332 33444444 45788999999888888766544 7778888888888899999999
Q ss_pred HHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcC----------ChHHHHH
Q 012360 105 TVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDME----------LVDLARE 172 (465)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~----------~~~~a~~ 172 (465)
.++++..+. .|+......+..+|.+.+.+.+-.+.=-++ ..+.+...+-.+++.+.+.- -..-|.+
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 999988876 455666777788888888776544333333 22334444445555554321 1233555
Q ss_pred HHHHhhcCCh--HH---HHHHHHHHHHcCChhHHHHHHH-HHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc
Q 012360 173 VFDEIVDKDI--VL---WRSMMHGCVKAKQPEEALELFK-KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 173 ~~~~~~~~~~--~~---~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (465)
.++.+.+.+. .+ ...-...+...|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 6666644431 11 1111233456788888888883 3433323333344445666677788888888888888887
Q ss_pred CCCCChhHHHHHHHHHHh----------------cCCHHHHHHHHhcCCCC-ChhhHHHHHHHHH---HcCChHHHHHHH
Q 012360 247 NITQDAFVKTALIDMYSK----------------CGSLEEALVTFYKTDCK-DVVTWTTMIEGLA---NYGLGNEALRVF 306 (465)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~a~~~~ 306 (465)
|. |. |...++.+.+ .+..+...+..++.... .-..|-+-+.++. ..|+.+++...|
T Consensus 256 ~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y 331 (932)
T KOG2053|consen 256 GN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYY 331 (932)
T ss_pred CC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHH
Confidence 62 21 2222222111 11222222222222211 1122333333332 346666655444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChh-------hHHHHHHHHHhcCC-----HHHHH
Q 012360 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE-------HFVCLVDLLSRAGL-----LYQAE 374 (465)
Q Consensus 307 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~-----~~~A~ 374 (465)
-+ +-|..| .|..=+..|...=..+.-..++...... .++.. -+...+..-.-.|. .+.-.
T Consensus 332 ~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~ 403 (932)
T KOG2053|consen 332 FK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSIL 403 (932)
T ss_pred HH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHH
Confidence 33 223344 2233334444444555556666666532 22221 12222222233342 22222
Q ss_pred HHHHhC----CC--------CCcc---------chHHHHHHHHHhcCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 375 EFIKIM----PA--------EDKF---------ISYKALLSACITYSEF---DLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 375 ~~~~~~----~~--------~~~~---------~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
.++.+. .. -|.. .+-+.|+..+.+.++. -+|+-+++......|.+..+-..++..|
T Consensus 404 a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY 483 (932)
T KOG2053|consen 404 AYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIY 483 (932)
T ss_pred HHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 333221 10 0111 1346677888887764 4788888888889999999888999999
Q ss_pred hhcCChHHHHHHHHHHHHhcCCCC
Q 012360 431 ALEGHWTEVAEARRNMKELQTRKK 454 (465)
Q Consensus 431 ~~~g~~~~a~~~~~~~~~~~~~~~ 454 (465)
.-.|-+..|.+.++.+.-..|..+
T Consensus 484 ~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 484 SYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHhcCChhHHHHHHhcchHHhhhc
Confidence 999999999999998765555443
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.38 E-value=2e-05 Score=61.16 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=50.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC--hhhHHHHHHHHHhcCC
Q 012360 296 YGLGNEALRVFYQMERKGIKPNE----ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT--IEHFVCLVDLLSRAGL 369 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 369 (465)
.++...+...++.+.+. .|+. .....+...+...|++++|...|+.+... ...|+ ......|...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 45555555555555554 2221 12223334455555666666666555543 11111 1122234444555555
Q ss_pred HHHHHHHHHhCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHH
Q 012360 370 LYQAEEFIKIMPAED-KFISYKALLSACITYSEFDLGKKVANN 411 (465)
Q Consensus 370 ~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (465)
+++|...++.....+ .+..+...+..+...|++++|...|++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555554433221 223334444445555555555555544
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=5.4e-05 Score=61.53 Aligned_cols=183 Identities=9% Similarity=0.039 Sum_probs=143.4
Q ss_pred cCCHHHHHHHHhcCCC--------CChh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCH
Q 012360 265 CGSLEEALVTFYKTDC--------KDVV-TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV-SVLAACRHSGLI 334 (465)
Q Consensus 265 ~~~~~~a~~~~~~~~~--------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~~~~ 334 (465)
..+.++..+++..+.. ++.. .|..++-+....|+.+.|...++.+.+. -|.+.-.. .-..-+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 4678888888876542 2332 5666677778889999999999999887 36543322 222334567999
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 012360 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNM 412 (465)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (465)
++|+++++.+.++ -+.|..++..-+-.....|+.-+|++-+....+ ..|...|..+...|...|+++.|.-+++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999975 355677777777778888988888887776654 358899999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHhhcCC---hHHHHHHHHHHHHhcC
Q 012360 413 MKLGNQSHEAYVLLSNFYALEGH---WTEVAEARRNMKELQT 451 (465)
Q Consensus 413 ~~~~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~ 451 (465)
+-..|.++..+..++..+.-.|- .+-|++++.+..+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999888774 4558889888776544
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.32 E-value=0.0037 Score=60.32 Aligned_cols=380 Identities=14% Similarity=0.104 Sum_probs=216.9
Q ss_pred HHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhh
Q 012360 28 YGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104 (465)
Q Consensus 28 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 104 (465)
+.+.|+.++|..+++... ..|..+...+-..|...++.++|..+|++.... -|+......+..+|++.+++..-.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 367799999999998765 337789999999999999999999999999876 477777888889999998887766
Q ss_pred HHHHHHHHhCCccchhhHHHHHHHHHhCC-C---------hHHHHHHHHhhCCCC-Cchh---HHHHHHHHHhcCChHHH
Q 012360 105 TVHCYATKVGLEYMLNMENALLLMYAKCK-E---------MDEALRLFDEMGSRR-NIVS---LNILINGYIDMELVDLA 170 (465)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A~~~~~~~~~~~-~~~~---~~~l~~~~~~~~~~~~a 170 (465)
++--++-+. .+.+...+=++++.....- . ..-|.+.++.+-..+ ...+ .......+...|++++|
T Consensus 131 kaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 665555553 2333443334444444321 1 223555555551122 1111 22233455678889999
Q ss_pred HHHHHH-h----hcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH-----HHHHHHH--------hccchh
Q 012360 171 REVFDE-I----VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV-----MVSVLSA--------CSSLSN 232 (465)
Q Consensus 171 ~~~~~~-~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~ll~~--------~~~~~~ 232 (465)
.+++.. . ...+...-+.-+..+...++|.+..++-.++...|.. |-.+ +..+-.. +...+.
T Consensus 210 l~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-dy~~~~~sv~klLe~~~~~~a~~~~s~~~~ 288 (932)
T KOG2053|consen 210 LEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-DYKIYTDSVFKLLELLNKEPAEAAHSLSKS 288 (932)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-chHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 999833 2 2235555667778888899999999999998887543 2111 1111111 111122
Q ss_pred hHhHHHHHHHHHHcCCCCChhHHHHHHHHHH---hcCCHHHHHHHH-hcCCC----------------------------
Q 012360 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYS---KCGSLEEALVTF-YKTDC---------------------------- 280 (465)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~-~~~~~---------------------------- 280 (465)
.+...+......... ....|-+-+.++. .-|+.+++...| ++...
T Consensus 289 l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~ 365 (932)
T KOG2053|consen 289 LDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLV 365 (932)
T ss_pred HHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhh
Confidence 233333333322221 1122222233332 346777654433 22110
Q ss_pred ---CChh-------hHHHHHHHHHHcC-----ChHHHHHHHHHHH---HCC------CCCCHH---------HHHHHHHH
Q 012360 281 ---KDVV-------TWTTMIEGLANYG-----LGNEALRVFYQME---RKG------IKPNEA---------TFVSVLAA 327 (465)
Q Consensus 281 ---~~~~-------~~~~l~~~~~~~~-----~~~~a~~~~~~m~---~~g------~~p~~~---------~~~~l~~~ 327 (465)
++.. .+...+......| ..+....++.+.. ++| +-|+.. +.+.+++.
T Consensus 366 ~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~ 445 (932)
T KOG2053|consen 366 LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDL 445 (932)
T ss_pred ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHH
Confidence 0100 0111111111122 1223333333321 222 334432 23566778
Q ss_pred HHhcCCHH---HHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC-ccchHHH-HHHHHHhcCCh
Q 012360 328 CRHSGLIT---EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED-KFISYKA-LLSACITYSEF 402 (465)
Q Consensus 328 ~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~-l~~~~~~~~~~ 402 (465)
|.+.++.. +|+.+++.... .-+.+..+-..+++.|.-.|-+..|.++|..+..+. ...|... +..-+...|++
T Consensus 446 ~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~ 523 (932)
T KOG2053|consen 446 WRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRS 523 (932)
T ss_pred HHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccc
Confidence 88877755 56666666664 234456666789999999999999999999886432 1222222 22344556777
Q ss_pred HHHHHHHHHHHHhC
Q 012360 403 DLGKKVANNMMKLG 416 (465)
Q Consensus 403 ~~a~~~~~~~~~~~ 416 (465)
..+...++...+..
T Consensus 524 ~~~s~~~~~~lkfy 537 (932)
T KOG2053|consen 524 SFASNTFNEHLKFY 537 (932)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777777776643
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=1.4e-05 Score=62.06 Aligned_cols=126 Identities=15% Similarity=0.132 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC-Ccc----chHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE-DKF----ISYKAL 392 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l 392 (465)
..|..++..+ ..++...+...++.+...++-.+ .......+...+...|++++|...|+.+... |+. .....+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 47899999999999987532221 1334445778899999999999999988653 332 245567
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
...+...|++++|+..++.. ...+..+..+...+++|.+.|++++|+..|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 78889999999999999763 333455667889999999999999999999864
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.31 E-value=1.3e-06 Score=48.89 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=31.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 012360 50 GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADK 84 (465)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 84 (465)
.+||+++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999998873
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.31 E-value=2.2e-06 Score=56.82 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=59.6
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC-ChHHHHHHHHHHHHh
Q 012360 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG-HWTEVAEARRNMKEL 449 (465)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 449 (465)
+..+|..++..+...|++++|+..|+++++.+|+++.+|..++.++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 35678889999999999999999999999999999999999999999999 799999999987664
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=4.7e-05 Score=68.42 Aligned_cols=124 Identities=13% Similarity=0.095 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 012360 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSG 332 (465)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~ 332 (465)
....++..+...++++.|..+|+++.+.++.....++..+...++..+|.+++.+..+. .| +...+......+.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456666667788888888888888777777777888888888888999999888866 34 4556666667788899
Q ss_pred CHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 333 LITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
+++.|+.+.+++.. ..| +-.+|..|..+|.+.|+++.|+..++.++.
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999984 345 566899999999999999999999988764
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.27 E-value=1.8e-05 Score=59.18 Aligned_cols=102 Identities=12% Similarity=0.016 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc----cchHHHHH
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK----FISYKALL 393 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~ 393 (465)
++..+...+...|++++|...|+.+...+.-.+ ....+..+..++.+.|++++|...++.+.. .|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555555666666666666666654211101 123444455556666666666666655432 221 23455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 394 SACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.++...|++++|...++++++..|++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 5555566666666666666666655544
No 147
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.4e-05 Score=67.07 Aligned_cols=111 Identities=17% Similarity=0.079 Sum_probs=90.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhc---CChHHHHHHHHHHHHhCCCCchhHHH
Q 012360 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITY---SEFDLGKKVANNMMKLGNQSHEAYVL 425 (465)
Q Consensus 351 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 425 (465)
+-|...|-.|...|...|+++.|..-|..... .+++..+..+..++... ....++..++++++..+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 55788888999999999999999988887643 44666777777666542 34678899999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCeeee
Q 012360 426 LSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461 (465)
Q Consensus 426 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 461 (465)
|+..+...|++.+|...|+.|.+.....+|+.+.|+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 999999999999999999999988777777666543
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.26 E-value=8.6e-06 Score=58.05 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
+..+...+...|++++|...++.+.. .| +...+..+...+...+++++|.+.+++..+..|.+...+..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44566667777777777777776543 22 33566677777778888888888888888888888777888888888888
Q ss_pred ChHHHHHHHHHHHH
Q 012360 435 HWTEVAEARRNMKE 448 (465)
Q Consensus 435 ~~~~a~~~~~~~~~ 448 (465)
++++|...+++..+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888876654
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.26 E-value=1.9e-06 Score=47.77 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 012360 50 GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVA 82 (465)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 82 (465)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578889999999999999999999998888877
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.22 E-value=1e-06 Score=61.05 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=44.9
Q ss_pred cCCHHHHHHHHHhCCC-CC---ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHH
Q 012360 367 AGLLYQAEEFIKIMPA-ED---KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 442 (465)
.|+++.|+.+++++.. .| +...+..+..++.+.|++++|+.++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3555566665555533 11 233444466666666777777776666 555555555555666777777777777766
Q ss_pred HHH
Q 012360 443 RRN 445 (465)
Q Consensus 443 ~~~ 445 (465)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.21 E-value=3.3e-05 Score=57.71 Aligned_cols=96 Identities=15% Similarity=-0.008 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc----cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC---chhHHHH
Q 012360 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK----FISYKALLSACITYSEFDLGKKVANNMMKLGNQS---HEAYVLL 426 (465)
Q Consensus 355 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 426 (465)
.++..++..+.+.|++++|.+.|+.+.. .|+ ...+..++.++.+.|+++.|+..++++....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3556677778888888888888887754 232 2356667888888888888888888888877764 4567888
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhc
Q 012360 427 SNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 427 ~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+.++...|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 888888888888888888887664
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.20 E-value=5.5e-06 Score=54.11 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=47.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 392 LLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+...+...|++++|++.|+++++..|.++..+..++.++.+.|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566778888888888888888888888888888888888888888888888887654
No 153
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=6.4e-05 Score=65.44 Aligned_cols=163 Identities=13% Similarity=0.050 Sum_probs=111.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH----------
Q 012360 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL--AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV---------- 358 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 358 (465)
.++...+++++|...-....+. .++ ..+..++ .++...++.+.+...|++.. ...|+...-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DAT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 4456678888888777776655 221 2333334 33445678888888888887 3345533221
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHhCCC-CC-----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 359 ---CLVDLLSRAGLLYQAEEFIKIMPA-ED-----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 359 ---~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
.=.+-..+.|++.+|.+.+.+... .| +...|.....+..+.|+.++|+.-.+++.+++|.-...|..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 112334578888999988887654 33 444566666777788999999999999999998888888888999
Q ss_pred HhhcCChHHHHHHHHHHHHhcCCCCCCCee
Q 012360 430 YALEGHWTEVAEARRNMKELQTRKKPGNSI 459 (465)
Q Consensus 430 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 459 (465)
+...++|++|.+.+++..+..-.+.+...|
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s~e~r~~l 360 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKDCEIRRTL 360 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 999999999999888776554444444433
No 154
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=4.7e-06 Score=46.14 Aligned_cols=33 Identities=36% Similarity=0.821 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 012360 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215 (465)
Q Consensus 183 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 215 (465)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 155
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=5.9e-06 Score=46.07 Aligned_cols=33 Identities=42% Similarity=0.766 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 317 (465)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888876
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.12 E-value=1.1e-05 Score=72.62 Aligned_cols=107 Identities=10% Similarity=0.031 Sum_probs=88.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcC
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYS 400 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~ 400 (465)
.-...+...|++++|+..|+++.+. .+.+...|..+..+|...|++++|...++++.. .| +...|..++.+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 3456677889999999999999863 344677888889999999999999999988754 33 6678888999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 401 EFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 401 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
++++|+..|+++++++|.++.+...+..+..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999886666554433
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=3e-05 Score=64.73 Aligned_cols=108 Identities=8% Similarity=-0.051 Sum_probs=67.3
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHH
Q 012360 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a 405 (465)
+.+.+++.+|+..|.++++ -.+.|...|..=..+|.+.|.++.|.+-.+.... +| ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4455677777777777763 2223455555666667777777777766665543 33 445677777777777777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhcCChH
Q 012360 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWT 437 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 437 (465)
++.|+++++++|++......|-.+--+.+...
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 77777777777777765555555544444433
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.05 E-value=6.8e-05 Score=60.19 Aligned_cols=82 Identities=12% Similarity=-0.010 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc----cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK----FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 428 (465)
...+..+...+...|++++|...|++... .|+ ...+..++..+.+.|++++|+..++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34455566666666666666666665532 111 2456777777888888888888888888888888887888888
Q ss_pred HHhhcCC
Q 012360 429 FYALEGH 435 (465)
Q Consensus 429 ~~~~~g~ 435 (465)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8877766
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.05 E-value=7.1e-05 Score=67.53 Aligned_cols=97 Identities=9% Similarity=-0.062 Sum_probs=78.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc
Q 012360 289 MIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367 (465)
Q Consensus 289 l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (465)
....+...|++++|+..|++.++. .| +...|..+..+|...|++++|+..++++... .+.+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 355677889999999999999887 44 4677888889999999999999999999853 234677888899999999
Q ss_pred CCHHHHHHHHHhCCC-CCccchH
Q 012360 368 GLLYQAEEFIKIMPA-EDKFISY 389 (465)
Q Consensus 368 g~~~~A~~~~~~~~~-~~~~~~~ 389 (465)
|++++|...|++... .|+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999988654 4443333
No 160
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.03 E-value=0.0018 Score=50.27 Aligned_cols=130 Identities=7% Similarity=-0.003 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---ccchHH
Q 012360 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED---KFISYK 390 (465)
Q Consensus 315 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~~~~~ 390 (465)
.|+...-..|..+....|+..+|...|++...- -+..|......+.++....+++..|...++.+-+ +| .+..-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 677766677888889999999999999998852 3455777888888888899999999988887644 33 445566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
.+.+.+...|.+.+|+..|+.++...|.... ....+..+.++|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~a-r~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQA-RIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHH-HHHHHHHHHHhcchhHHHHHHHHH
Confidence 6778888899999999999999988876655 666777888888887766544444
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.02 E-value=6e-05 Score=53.51 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcC
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYS 400 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 400 (465)
.+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++.... ..+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3444455555666666666655532 122234455555555556666666666555432 123345556666666666
Q ss_pred ChHHHHHHHHHHHHhCC
Q 012360 401 EFDLGKKVANNMMKLGN 417 (465)
Q Consensus 401 ~~~~a~~~~~~~~~~~p 417 (465)
+++.|...+++..+..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666665554
No 162
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.00 E-value=1.6e-05 Score=52.49 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=44.2
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
...|++++|+++|+++.+..|++..++..++.+|.+.|++++|..+++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467888888888888888888888888888888888888888888888776543
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.99 E-value=1.7e-05 Score=51.75 Aligned_cols=61 Identities=11% Similarity=0.033 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 012360 360 LVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
+...+.+.|++++|.+.|+.+.. .| +...+..+..++...|++++|...|+++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45677888888888888888754 33 677788888889999999999999999999988874
No 164
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.97 E-value=3.5e-05 Score=51.65 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=47.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 394 SACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
..|.+.+++++|.++++++++.+|+++..+...+.++.+.|++++|.+.++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4567788888888888888888888888888888888888888888888887775543
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.97 E-value=0.00041 Score=65.47 Aligned_cols=140 Identities=11% Similarity=-0.000 Sum_probs=91.6
Q ss_pred CCChhhHHHHHHHHHHc--C---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc--------CCHHHHHHHHHHhh
Q 012360 280 CKDVVTWTTMIEGLANY--G---LGNEALRVFYQMERKGIKPNE-ATFVSVLAACRHS--------GLITEGCQLFRRMG 345 (465)
Q Consensus 280 ~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 345 (465)
..|...|...+.+.... + ..+.|..+|++..+. .|+. ..+..+..++... .+...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45677787777764432 2 366888889988887 6764 4444444333221 12334444444433
Q ss_pred cCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 346 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.....+.+...|..+.-.....|++++|...++++.. +|+...|..++..+...|+.++|.+.++++..++|.+++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2211233456677776666677888888888887654 566777888888888888888888888888888888876
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=3.1e-05 Score=64.65 Aligned_cols=88 Identities=18% Similarity=0.170 Sum_probs=78.4
Q ss_pred HHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHH
Q 012360 362 DLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439 (465)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 439 (465)
+-+.+.+++.+|+..|.+... .| |...|..-..+|.+.|.++.|++-.+.++.++|.....|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 345678999999999988755 44 7788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 012360 440 AEARRNMKEL 449 (465)
Q Consensus 440 ~~~~~~~~~~ 449 (465)
.+.|++..+.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999876543
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.95 E-value=0.00012 Score=58.45 Aligned_cols=112 Identities=7% Similarity=-0.161 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----ccchHHHHHHHHHhcCChHHHHHHH
Q 012360 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED----KFISYKALLSACITYSEFDLGKKVA 409 (465)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 409 (465)
..+...+..+.+..+.......+..++..+...|++++|...|++... .+ ...+|..+...+...|++++|+..+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 333444444432212233355667777777788888888888877632 12 2346888888999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHh-------hcCChHHHHHHHHHH
Q 012360 410 NNMMKLGNQSHEAYVLLSNFYA-------LEGHWTEVAEARRNM 446 (465)
Q Consensus 410 ~~~~~~~p~~~~~~~~l~~~~~-------~~g~~~~a~~~~~~~ 446 (465)
+++.+..|.....+..++..+. ..|++++|...+++.
T Consensus 96 ~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 96 FQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9999999988888888888888 888888776666644
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.95 E-value=0.00033 Score=60.94 Aligned_cols=135 Identities=11% Similarity=0.134 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHH
Q 012360 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA-CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362 (465)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (465)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+ .++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 357778888888888999999999988542 2344555555544 3335677779999999986 45677888889999
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-C----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 363 LLSRAGLLYQAEEFIKIMPAE-D----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.+...|+.+.|..+|++.... + ....|...+..-.+.|+.+.+.++.+++.+.-|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999987652 2 2347899999989999999999999999998887655
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.94 E-value=0.002 Score=56.31 Aligned_cols=219 Identities=9% Similarity=0.078 Sum_probs=121.3
Q ss_pred ChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCch--hhHHHHHHHhcchhhhhhhhHHH
Q 012360 33 LFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGI---VADK--ITLVILFSACARLEKLHYGKTVH 107 (465)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~~~~--~~~~~l~~~~~~~~~~~~a~~~~ 107 (465)
++++|..+|+. ....|-..|++++|.+.|.+...... .+.. ..|......+ +..+++.|...
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~- 96 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIEC- 96 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHH-
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHH-
Confidence 66666655554 56777788888888888877643211 1111 0122222222 12244444333
Q ss_pred HHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhc-CChHHHHHHHHHhhcC------
Q 012360 108 CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM-ELVDLAREVFDEIVDK------ 180 (465)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~------ 180 (465)
+...+..|...|++..|-+.+..+ ...|... |++++|.+.|++...-
T Consensus 97 --------------~~~A~~~y~~~G~~~~aA~~~~~l------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~ 150 (282)
T PF14938_consen 97 --------------YEKAIEIYREAGRFSQAAKCLKEL------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGS 150 (282)
T ss_dssp --------------HHHHHHHHHHCT-HHHHHHHHHHH------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-
T ss_pred --------------HHHHHHHHHhcCcHHHHHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 444556677777777777776665 3455555 6777777777766221
Q ss_pred ---ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-----CHH-HHHHHHHHhccchhhHhHHHHHHHHHHc--CCC
Q 012360 181 ---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP-----DEE-VMVSVLSACSSLSNLQYGRLVHRFILQN--NIT 249 (465)
Q Consensus 181 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~ 249 (465)
-..++..+...+.+.|++++|.++|++........ +.. .|...+-++...||...|...++..... ++.
T Consensus 151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 12456677788899999999999999887643221 121 2222333455678888888888887654 222
Q ss_pred CC--hhHHHHHHHHHHh--cCCHHHHHHHHhcCCCCChhhHHHHH
Q 012360 250 QD--AFVKTALIDMYSK--CGSLEEALVTFYKTDCKDVVTWTTMI 290 (465)
Q Consensus 250 ~~--~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~l~ 290 (465)
.+ ......|+.++-. ...++.+..-|+.+.+-|...-..|+
T Consensus 231 ~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 231 SSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp TSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 22 3345566666654 34567777777777766655444443
No 170
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.90 E-value=1.8e-05 Score=42.62 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 012360 50 GSWNTLMSIYNDFSDSGEVLILFKQLIFEGI 80 (465)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 80 (465)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677788888888888888888888777653
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.89 E-value=2.1e-05 Score=54.39 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=36.9
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 012360 296 YGLGNEALRVFYQMERKGIK-PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 374 (465)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|+.++++ .+. + +.+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~-~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-D-PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-H-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-C-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35555666666665554211 1223333355555566666666666555 211 1 112233334455555555555555
Q ss_pred HHHH
Q 012360 375 EFIK 378 (465)
Q Consensus 375 ~~~~ 378 (465)
++++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 172
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.89 E-value=0.015 Score=51.29 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHh
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT 398 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (465)
.+.+.-+.-+...|+...|.++-.+.. -|+...|...+.+++..+++++-.++... +..+.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 355556677778898888887766654 38888999999999999999998887654 4567889999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 012360 399 YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
.|+..+|..+..++ . +..-+..|.+.|++.+|.+.--
T Consensus 250 ~~~~~eA~~yI~k~--------~-~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNKKEASKYIPKI--------P-DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCHHHHHHHHHhC--------C-hHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999888871 1 3567888899999999876543
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.88 E-value=0.00032 Score=56.31 Aligned_cols=130 Identities=11% Similarity=0.078 Sum_probs=84.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHH
Q 012360 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN--EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359 (465)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 359 (465)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...++++... .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344566777777778888888888888776532222 346677777788888888888888887742 2234555666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
+..++...|+...+..-++.. ...+++|.++++++.+.+|++ +..++.-+...|
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 666777766665544332221 123677888899888888887 444444444444
No 174
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.014 Score=55.38 Aligned_cols=111 Identities=16% Similarity=0.145 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 012360 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332 (465)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 332 (465)
-+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+. .+.-|..++.+|.+.|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 3444455556666777777777777777777777777777777777776655544322 2455666677777777
Q ss_pred CHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 012360 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379 (465)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (465)
+.++|.+++-+.. +.+ ..+.+|.+.|++.+|.++--+
T Consensus 759 n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 759 NKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 7777777666554 111 456667777777776665433
No 175
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.83 E-value=0.00017 Score=65.29 Aligned_cols=107 Identities=10% Similarity=0.044 Sum_probs=55.7
Q ss_pred cchhhhHHHHHHHccCChHHHHHHhccCCC-C-----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHH
Q 012360 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPF-R-----DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90 (465)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 90 (465)
+......+++......+++.+..++-+... | -..+.+++++.|.+.|..+.++.+++.=...|+-||.++++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 444444455555555555555555444331 1 1234445555555555555555555555555555555555555
Q ss_pred HHHhcchhhhhhhhHHHHHHHHhCCccchhhHH
Q 012360 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123 (465)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 123 (465)
+..+.+.|++..|.++...|...+...+..++.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~ 177 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQA 177 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHH
Confidence 555555555555555555555544333333333
No 176
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.031 Score=52.80 Aligned_cols=247 Identities=14% Similarity=0.036 Sum_probs=133.2
Q ss_pred ChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC--------chhhHHHHHHHhcchhhhhhh
Q 012360 33 LFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-GIVA--------DKITLVILFSACARLEKLHYG 103 (465)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~a 103 (465)
.+++|.++.+. .|....|..+.....+.-.++.|...|-+.... |++. +...-..=+. +--|++++|
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHh
Confidence 35666666654 345567777777666666666666666554321 2110 0000011111 224677777
Q ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCC----chhHHHHHHHHHhcCChHHHHHHHHHhhc
Q 012360 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN----IVSLNILINGYIDMELVDLAREVFDEIVD 179 (465)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 179 (465)
++++-.+.+.. ..+..+.+.||+-...++++.=+...| ..+|+.+...++....+++|.+.|.....
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77776665542 345566677777777777665422222 23567777777777777777777655422
Q ss_pred CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHH
Q 012360 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259 (465)
Q Consensus 180 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 259 (465)
. ...+.++.+..++++-..+...+ +.+....-.+...+.+.|.-++|.+.+-+. +. | ...+
T Consensus 825 ~-----e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv 885 (1189)
T KOG2041|consen 825 T-----ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAV 885 (1189)
T ss_pred h-----HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHH
Confidence 1 12344455554454444433333 334455556666677777777766555332 11 1 1245
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhhHHH--------------HHHHHHHcCChHHHHHHHHHHHH
Q 012360 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTT--------------MIEGLANYGLGNEALRVFYQMER 311 (465)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------l~~~~~~~~~~~~a~~~~~~m~~ 311 (465)
..|...+++.+|.++-++..-|.+.+.-+ -|..+.+.|+.-+|.+++.+|-+
T Consensus 886 ~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 56667777777777777665554433211 13334455555566666666543
No 177
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.81 E-value=0.023 Score=50.88 Aligned_cols=409 Identities=12% Similarity=0.064 Sum_probs=213.4
Q ss_pred HHHccCChHHHHHHhccCCCC---C------cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHh--c
Q 012360 27 FYGRMALFTDARVLFDKMPFR---D------VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSAC--A 95 (465)
Q Consensus 27 ~~~~~~~~~~A~~~~~~~~~~---~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~--~ 95 (465)
.+.+.+++.+|..+|.++-.. + ...-+.++++|.. ++.+.....+....+. .| ...|..+..++ .
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 345678888999888877622 2 1233455666554 4555555555555553 23 34455555544 4
Q ss_pred chhhhhhhhHHHHHHHHh--CCcc------------chhhHHHHHHHHHhCCChHHHHHHHHhh-------CCCCCchhH
Q 012360 96 RLEKLHYGKTVHCYATKV--GLEY------------MLNMENALLLMYAKCKEMDEALRLFDEM-------GSRRNIVSL 154 (465)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~ 154 (465)
+.+.++.|.+.+...... +..+ |...-+..+.++...|.+.+++.+++++ ...-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678888888888776655 2221 2222355677788888888888888888 223466677
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHh-------hcCCh----------HHHHHHHHHHHHc--CChhHHHHHHHH
Q 012360 155 NILINGYIDM--------ELVDLAREVFDEI-------VDKDI----------VLWRSMMHGCVKA--KQPEEALELFKK 207 (465)
Q Consensus 155 ~~l~~~~~~~--------~~~~~a~~~~~~~-------~~~~~----------~~~~~l~~~~~~~--g~~~~a~~~~~~ 207 (465)
+.++-.+.+. ...+-+.+.++.+ ...+. .....++....-. .+..--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 7644333321 2222222222222 11111 1122222222111 122222333333
Q ss_pred HHHcCCCCCHHH-HHHHHHHhccchhhHhHHHHHHHHHHcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHhcCC--C
Q 012360 208 MIDEGVTPDEEV-MVSVLSACSSLSNLQYGRLVHRFILQNNITQ----DAFVKTALIDMYSKCGSLEEALVTFYKTD--C 280 (465)
Q Consensus 208 ~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~ 280 (465)
-...-+.|+... ...+...+.+ +.+++..+.+.+....+.+ -..++..++...++.++...|.+.+.-+. +
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 333334454222 2233333333 4555555555554432211 23456667777777777777776665433 3
Q ss_pred CChhhH-------HHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHH-HHHHHH---HHHHhcCC-HHHHHHHHHHh
Q 012360 281 KDVVTW-------TTMIEGLAN----YGLGNEALRVFYQMERKGIKPNEA-TFVSVL---AACRHSGL-ITEGCQLFRRM 344 (465)
Q Consensus 281 ~~~~~~-------~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~---~~~~~~~~-~~~a~~~~~~~ 344 (465)
|+...- ..+-...+. .-+...=+.+|.......+ |.. ....|+ .-+.+.|. -++|+.+++.+
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 432211 111222221 1123333455555554422 221 222222 33455565 78889999988
Q ss_pred hcCCCCCC-ChhhHHHHH----HHHHhc---CCHHHHHH---HHHhCCCCC----ccchHHHHHHH--HHhcCChHHHHH
Q 012360 345 GGVYRVQP-TIEHFVCLV----DLLSRA---GLLYQAEE---FIKIMPAED----KFISYKALLSA--CITYSEFDLGKK 407 (465)
Q Consensus 345 ~~~~~~~~-~~~~~~~l~----~~~~~~---g~~~~A~~---~~~~~~~~~----~~~~~~~l~~~--~~~~~~~~~a~~ 407 (465)
.+ +.+ |..+-+.+. ..|..+ ..+.+-.+ ..++..-.| +...-|.|..+ +...|++.++.-
T Consensus 407 l~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 407 LQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 84 233 333333221 122211 11222222 222222222 23344555544 457899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 408 VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 408 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
.-....+..| ++.+|..++.++....++++|..++..+.
T Consensus 484 ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 484 YSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 8888889999 77789999999999999999999998763
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.80 E-value=0.00032 Score=49.51 Aligned_cols=80 Identities=18% Similarity=-0.000 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCchhhHHHHHHHhcch--------hhhhhhhHHHHHHHHhCCccchhhH
Q 012360 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGI-VADKITLVILFSACARL--------EKLHYGKTVHCYATKVGLEYMLNME 122 (465)
Q Consensus 52 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (465)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++. +++-..+.+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 89999999999887653 2455677888888888888999999
Q ss_pred HHHHHHHHh
Q 012360 123 NALLLMYAK 131 (465)
Q Consensus 123 ~~l~~~~~~ 131 (465)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888887764
No 179
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.76 E-value=0.00027 Score=61.49 Aligned_cols=129 Identities=11% Similarity=0.087 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHhCCC--CCccchHHHHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR-AGLLYQAEEFIKIMPA--EDKFISYKALLSA 395 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 395 (465)
.+|..+++..-+.+..+.|..+|.++.+.. ..+..+|......-.. .++.+.|.++|+.... ..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467788888888999999999999999642 2344555555544334 5677779999998765 4477889999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 396 CITYSEFDLGKKVANNMMKLGNQSH---EAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+...++.+.|..+|++++..-|... .+|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765544 47999999999999999999999988764
No 180
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.73 E-value=6.9e-05 Score=49.56 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=49.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcC-ChHHHHHHHHHHHHhCC
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYS-EFDLGKKVANNMMKLGN 417 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 417 (465)
++..|..+...+...|++++|+..|++... +.++..|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345677777778888888888887776543 336667888888888888 68888888888888877
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.72 E-value=0.00093 Score=47.26 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhccch--------hhHhHHHHHHHHHHcCCCCChhHH
Q 012360 185 WRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLS--------NLQYGRLVHRFILQNNITQDAFVK 255 (465)
Q Consensus 185 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 255 (465)
-...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-....+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 899999999998866432 345677889999999999999999
Q ss_pred HHHHHHHHhc
Q 012360 256 TALIDMYSKC 265 (465)
Q Consensus 256 ~~l~~~~~~~ 265 (465)
+.++..+.+.
T Consensus 108 nivl~~Llkg 117 (120)
T PF08579_consen 108 NIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHh
Confidence 9998887653
No 182
>PRK15331 chaperone protein SicA; Provisional
Probab=97.72 E-value=0.00033 Score=53.70 Aligned_cols=82 Identities=12% Similarity=0.053 Sum_probs=38.8
Q ss_pred HhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHH
Q 012360 365 SRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 442 (465)
...|++++|..+|+-+.. .-+...|..|..++...+++++|+..|..+..+++++|.++...+.++...|+.+.|+..
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 344445555544443322 123334444444444455555555555555555555555555555555555555555554
Q ss_pred HHHH
Q 012360 443 RRNM 446 (465)
Q Consensus 443 ~~~~ 446 (465)
|+..
T Consensus 128 f~~a 131 (165)
T PRK15331 128 FELV 131 (165)
T ss_pred HHHH
Confidence 4433
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.71 E-value=0.00084 Score=53.64 Aligned_cols=100 Identities=8% Similarity=-0.038 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHH
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACI 397 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~ 397 (465)
+..+...+...|++++|+..|++......-++ ...++..+..++...|++++|.+.++.... .| ...++..+...+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 33444444444555555555555542211001 122444455555555555555555544322 11 2223333333333
Q ss_pred -------hcCChH-------HHHHHHHHHHHhCCCCc
Q 012360 398 -------TYSEFD-------LGKKVANNMMKLGNQSH 420 (465)
Q Consensus 398 -------~~~~~~-------~a~~~~~~~~~~~p~~~ 420 (465)
..|+++ +|..++++.....|++.
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 556655 45555555666666543
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.71 E-value=0.0034 Score=53.26 Aligned_cols=171 Identities=10% Similarity=0.009 Sum_probs=97.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--CCh-hh---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 012360 257 ALIDMYSKCGSLEEALVTFYKTDC--KDV-VT---WTTMIEGLANYGLGNEALRVFYQMERKGIKPN--EATFVSVLAAC 328 (465)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~ 328 (465)
.....+...|++++|.+.|+.+.. |+. .. .-.++.++.+.+++++|...+++..+. .|+ ...+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHH
Confidence 344555667777777777776653 221 11 233455667777777777777777665 332 12222223222
Q ss_pred Hh--cC---------------C---HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccch
Q 012360 329 RH--SG---------------L---ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388 (465)
Q Consensus 329 ~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 388 (465)
+. .+ + ...|+..|+.+++. -|+.. -..+|...+..+...- ...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~S~-------------ya~~A~~rl~~l~~~l-a~~ 177 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPNSQ-------------YTTDATKRLVFLKDRL-AKY 177 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcCCh-------------hHHHHHHHHHHHHHHH-HHH
Confidence 21 11 1 12344444444432 12221 1223333222221100 001
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch---hHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHE---AYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
-..+.+.|.+.|.+..|+.-++.+++.-|+.+. ....++.+|...|..++|..+.+.+
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 124566788999999999999999998876655 5678889999999999999887755
No 185
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=5.6e-05 Score=40.60 Aligned_cols=29 Identities=38% Similarity=0.668 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKG 313 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 313 (465)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 186
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.70 E-value=0.034 Score=49.76 Aligned_cols=128 Identities=11% Similarity=0.132 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh-CCCCCccchH-HHHHHHHH
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI-MPAEDKFISY-KALLSACI 397 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~-~~l~~~~~ 397 (465)
.|...++.-.+....+.|..+|-++.+..-+.+++..+++++..+ ..|+..-|.++|+- |..-||...| ...+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 455566666677778888888888886632567788888888754 45778888888875 4444555554 44556667
Q ss_pred hcCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 398 TYSEFDLGKKVANNMMKLGNQS--HEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
..++-+.|..+|+..++.-..+ ..+|..++.--..-|+...+..+-++|.+
T Consensus 478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7888888888888766633222 44577888888888888777666665543
No 187
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.69 E-value=0.001 Score=51.71 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH-----HhcCCCCCC
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK-----ELQTRKKPG 456 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ 456 (465)
....++..+...|++++|+..+++++..+|-+...|..++.+|...|+..+|.++|+++. +.|+.|+|.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 456677788899999999999999999999999999999999999999999999998874 468877764
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.66 E-value=0.00066 Score=49.92 Aligned_cols=55 Identities=15% Similarity=0.004 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCC---CchhHHHHHHHHhhcCChHHHHHHH
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGNQ---SHEAYVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~ 443 (465)
+-.+...+...|++++|..++++.....|+ +......++.++...|+.++|.+.+
T Consensus 41 ~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 41 LIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 334445555555555555555555554444 3333444445555555555555444
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.66 E-value=0.023 Score=48.23 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIM 380 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (465)
.+..-|.+.|.+..|..-++.+.+.+.-.| .......++.+|...|..++|.++...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 345557777888888877777776432222 3444556677777777777777766544
No 190
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.65 E-value=0.0046 Score=47.31 Aligned_cols=90 Identities=8% Similarity=-0.074 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCccchHHHHHHHHHhcCCh
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP--AEDKFISYKALLSACITYSEF 402 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 402 (465)
..-+...|++++|.++|+-+..- -+-+...|..|.-++-..|++++|+..|.... ...++..+-.+..++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 33344455555555555555421 12233444455555555555555555555432 133445555555555555555
Q ss_pred HHHHHHHHHHHHhC
Q 012360 403 DLGKKVANNMMKLG 416 (465)
Q Consensus 403 ~~a~~~~~~~~~~~ 416 (465)
+.|.+.|+.++...
T Consensus 120 ~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 120 CYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555533
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.63 E-value=0.0026 Score=60.19 Aligned_cols=135 Identities=17% Similarity=0.114 Sum_probs=96.3
Q ss_pred CCCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhc--------CCHHHHHHHHH
Q 012360 313 GIKPNEATFVSVLAACRH--S---GLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRA--------GLLYQAEEFIK 378 (465)
Q Consensus 313 g~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 378 (465)
+.+.+...|...+++... . ++...|..+|+++.+. .|+ ...+..+..++... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345677888888877543 2 3477899999999953 564 45555544444332 12334444444
Q ss_pred hCCC----CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 379 IMPA----EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 379 ~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
.... ..++..|..+.-.....|++++|...++++++++|. ...|..++.++...|+.++|.+.+++....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4322 224566777777777789999999999999999994 67799999999999999999999998765543
No 192
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.62 E-value=0.0013 Score=52.74 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=74.8
Q ss_pred HHHHHHh--hcCChHHHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch------------
Q 012360 171 REVFDEI--VDKDIVLWRSMMHGCVK-----AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS------------ 231 (465)
Q Consensus 171 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------ 231 (465)
...|+.. ..++..+|..++..|.+ .|+.+=....+..|.+-|+.-|..+|+.|+..+-+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445544 45677777777777764 4677777888888888888889999999888876532
Q ss_pred ----hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 012360 232 ----NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267 (465)
Q Consensus 232 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (465)
+.+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 356788999999999999999999999988876554
No 193
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.62 E-value=0.0024 Score=58.04 Aligned_cols=120 Identities=14% Similarity=0.032 Sum_probs=81.0
Q ss_pred CCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhh
Q 012360 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN--NITQDAFVKTALIDMYSKCGSLEEALVTFYKTD----CKDVVT 285 (465)
Q Consensus 212 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~ 285 (465)
+.+.+...+..++..+....+++.+..++...... ....-..+..++++.|...|..+.++.++..=. -||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666777777777777777777777776654 222233445577777777777777777776533 367777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 331 (465)
++.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777788888888877777777666666666666666555554
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.61 E-value=5.4e-05 Score=49.89 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=23.0
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
..|++++|++.|+++... .+.+...+..++.+|.+.|++++|.++++.+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555555555431 12244444445555555555555555554443
No 195
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.58 E-value=0.00018 Score=42.29 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=37.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 428 (465)
.+|..+...|...|++++|+++|+++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999998887764
No 196
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.56 E-value=0.02 Score=51.05 Aligned_cols=165 Identities=13% Similarity=0.141 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC-------ChhhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012360 254 VKTALIDMYSKCGSLEEALVTFYKTDCK-------DVVTWTTMIEGLAN---YGLGNEALRVFYQMERKGIKPNEATFVS 323 (465)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 323 (465)
+...++-+|....+++...++++.+... ....-.....++.+ .|+.++|..++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3445555677777777777777766643 11222234455556 7888999999888666656778888888
Q ss_pred HHHHHHh---------cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH----HHHHH---Hh-CCC----
Q 012360 324 VLAACRH---------SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ----AEEFI---KI-MPA---- 382 (465)
Q Consensus 324 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~---~~-~~~---- 382 (465)
+.+.|-. ....++|+..|.+.-+. .|+...--.++..+...|...+ ..++- .. +..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~---~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI---EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC---CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7776632 22477888888887743 4554443344444555554222 22222 11 111
Q ss_pred --CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 383 --EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 383 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
..+-..+.+++.+..-.|++++|.+.+++|.+..|+...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 123344577888889999999999999999999876643
No 197
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.05 Score=47.65 Aligned_cols=96 Identities=10% Similarity=0.111 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCC-CCCCC--hhh
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIK-----PNEA-TFVSVLAACRHSGLITEGCQLFRRMGGVY-RVQPT--IEH 356 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~ 356 (465)
+..+...+.+.|++++|.++|++....-.. .+.. .|...+-++...||+..|...+++..... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 444666777888888888888887664322 1221 23344456667788888888888876431 22222 334
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHhCC
Q 012360 357 FVCLVDLLSR--AGLLYQAEEFIKIMP 381 (465)
Q Consensus 357 ~~~l~~~~~~--~g~~~~A~~~~~~~~ 381 (465)
...|+.++-. ...+..|..-|+.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 4556666644 234666666666665
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.55 E-value=0.0011 Score=56.65 Aligned_cols=100 Identities=11% Similarity=0.020 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----ccchH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED----KFISY 389 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~ 389 (465)
..|...+....+.|++++|+..|+.+.+.+ |+ ...+..+..+|...|++++|...|+.+.. .| ....+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345555554556688888888888887542 33 24566777777888888888887777643 12 23445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
..++..+...|++++|..+|+++++..|++..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 55566666778888888888888877777654
No 199
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.53 E-value=8e-05 Score=40.76 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhcCChHHHH
Q 012360 408 VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440 (465)
Q Consensus 408 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 440 (465)
+|+++++++|+++.+|..|+.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378899999999999999999999999999986
No 200
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.53 E-value=0.056 Score=47.79 Aligned_cols=107 Identities=16% Similarity=0.093 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 012360 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335 (465)
Q Consensus 256 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 335 (465)
+..+.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++-..+... +-++..|..++.+|.+.|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33444455556666666666666556666666666666666666655544321 112355666666666666666
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 012360 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379 (465)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (465)
+|..++.++. +..-+..|.++|++.+|.+.--+
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666555521 12334555666666666554433
No 201
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0013 Score=57.77 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
..++..|..++.+.+++..|++..+.... ++|....-.-..++...|+++.|+..|++++++.|.|-.+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34677888999999999999999988755 5578888888899999999999999999999999999998888888888
Q ss_pred hcCChHHH-HHHHHHHHH
Q 012360 432 LEGHWTEV-AEARRNMKE 448 (465)
Q Consensus 432 ~~g~~~~a-~~~~~~~~~ 448 (465)
+...+.+. .++|..|-.
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 77776664 778888854
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.53 E-value=0.0014 Score=52.67 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=72.5
Q ss_pred HHHhccC--CCCCcccHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc--------------
Q 012360 38 RVLFDKM--PFRDVGSWNTLMSIYND-----FSDSGEVLILFKQLIFEGIVADKITLVILFSACAR-------------- 96 (465)
Q Consensus 38 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------------- 96 (465)
...|+.. ...+..+|..+++.+.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 45677788888888765 46777778888999999999999999999988754
Q ss_pred --hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCC
Q 012360 97 --LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134 (465)
Q Consensus 97 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 134 (465)
-.+.+-|.+++++|...|+-||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 13455677777888877877888877777777755543
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.045 Score=51.74 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=75.6
Q ss_pred CChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCchhhHHHHHHHhcchhhhhhhhHHHHHH
Q 012360 32 ALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYA 110 (465)
Q Consensus 32 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 110 (465)
|++++|.+++-.+.++|. .|..+.+.|++-...++++.--.. +-..-...|+.+...++....++.|.+.+..-
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555544444432 234444455555444444321000 00001124555555555555555555555432
Q ss_pred HHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHH
Q 012360 111 TKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190 (465)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 190 (465)
... ...+.++.+..++++-+.+-..+ +.+....-.+..++...|.-++|.+.|-+...|. ..+.
T Consensus 823 ~~~---------e~~~ecly~le~f~~LE~la~~L--pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~ 886 (1189)
T KOG2041|consen 823 GDT---------ENQIECLYRLELFGELEVLARTL--PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVH 886 (1189)
T ss_pred cch---------HhHHHHHHHHHhhhhHHHHHHhc--CcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHH
Confidence 211 23455555555555544444443 3455555666677777777777776665554432 2344
Q ss_pred HHHHcCChhHHHHHHHH
Q 012360 191 GCVKAKQPEEALELFKK 207 (465)
Q Consensus 191 ~~~~~g~~~~a~~~~~~ 207 (465)
.|...++|.+|.++-+.
T Consensus 887 tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55666666666665543
No 204
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.52 E-value=0.064 Score=48.12 Aligned_cols=134 Identities=9% Similarity=0.047 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhH-HHHH
Q 012360 284 VTWTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF-VCLV 361 (465)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~ 361 (465)
..|...+..-.+..-.+.|..+|.+..+.| +.++...+++++.-++ .|+..-|..+|+--... .||...| ...+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 456677777777888899999999999988 5677788888887665 48889999999987753 2444333 4566
Q ss_pred HHHHhcCCHHHHHHHHHhCCC----CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 362 DLLSRAGLLYQAEEFIKIMPA----EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.-+.+.++-..|..+|+.... ..-...|..++.--..-|+...+..+=+++.+.-|....
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 677889999999999985432 223567889998888899999999988888888876543
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.011 Score=48.87 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChh-----HHHH
Q 012360 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF-----VKTA 257 (465)
Q Consensus 183 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ 257 (465)
.+.+.++..+.-.|.+.-....+++..+...+.+......+.+...+.||.+.|..+++...+..-..+.. +...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34556666677777777778888888776666667777777777778888888888888776543233322 2233
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012360 258 LIDMYSKCGSLEEALVTFYKTDCK---DVVTWTTMIEGLANYGLGNEALRVFYQMERK 312 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 312 (465)
....|.-.+++..|...+.++... |+...|.-.-+..-.|+..+|.+.++.|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334455566777777777666533 3444444444445567777777777777766
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.47 E-value=0.0048 Score=45.42 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=62.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHH
Q 012360 289 MIEGLANYGLGNEALRVFYQMERKGIKPN--EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLS 365 (465)
Q Consensus 289 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 365 (465)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566778888888888888888876654 23566677888888888888888888875421101 2222233445677
Q ss_pred hcCCHHHHHHHHHhC
Q 012360 366 RAGLLYQAEEFIKIM 380 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~ 380 (465)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 788888888776543
No 207
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.47 E-value=0.074 Score=47.78 Aligned_cols=128 Identities=9% Similarity=0.075 Sum_probs=70.3
Q ss_pred ccchhHHHHHhccCCcc------hhhhHHHHHHHccCChHHHHHHhccCCCC-CcccHHHHHHHH--HhcCChhHHHHHH
Q 012360 2 GKGLHAHVTKTALDSDI------YVGNSLIHFYGRMALFTDARVLFDKMPFR-DVGSWNTLMSIY--NDFSDSGEVLILF 72 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~--~~~~~~~~a~~~~ 72 (465)
|.++|..+.+.. ..++ ..-+.++++|-.. +.+.....+....+. ....|-.+..++ .+.+.+.+|++.+
T Consensus 25 sEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~l 102 (549)
T PF07079_consen 25 SEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQAL 102 (549)
T ss_pred HHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455666665543 2222 2334666666643 344444333333211 234455555443 4678888888887
Q ss_pred HHHHHc--CCCC------------chhhHHHHHHHhcchhhhhhhhHHHHHHHHhC----CccchhhHHHHHHHHHh
Q 012360 73 KQLIFE--GIVA------------DKITLVILFSACARLEKLHYGKTVHCYATKVG----LEYMLNMENALLLMYAK 131 (465)
Q Consensus 73 ~~m~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 131 (465)
..-... +-.| |-..=+..+..+...|++.+++.+++++...= ...+..+|+.++-.+++
T Consensus 103 s~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 103 SVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 766543 2111 11112334556677888888888888777643 33777788876655544
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.47 E-value=0.00053 Score=59.94 Aligned_cols=130 Identities=11% Similarity=-0.022 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHh---hcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC------CC--cc
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRM---GGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA------ED--KF 386 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~--~~ 386 (465)
..|..|.+.|.-.|+++.|+...+.- .+.+|-.. ....+..|.+++.-.|+++.|.+.|+.... +. ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666666667778888887765532 22223222 345677788888889999999888875321 11 34
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHH----hC--CCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMK----LG--NQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.+..+|...|.-..++++|+.++.+-+. ++ .-....++.|+.++...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566778888888888999888777554 22 22344688899999999999999888876554
No 209
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.035 Score=49.12 Aligned_cols=85 Identities=11% Similarity=-0.024 Sum_probs=42.0
Q ss_pred HHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcC
Q 012360 293 LANYGLGNEALRVFYQMERK---GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAG 368 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 368 (465)
..+.|++..|.+.+.+.+.. +..|+...|.....+..+.|+..+|+.-.+.... +.+. ...+..-..++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665543 1223334444444555556666666666655552 1221 222222333444455
Q ss_pred CHHHHHHHHHhC
Q 012360 369 LLYQAEEFIKIM 380 (465)
Q Consensus 369 ~~~~A~~~~~~~ 380 (465)
++++|.+-++..
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 566666555543
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.45 E-value=0.00058 Score=45.66 Aligned_cols=63 Identities=6% Similarity=0.015 Sum_probs=52.0
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 423 (465)
...|.+.+++++|.++++.+.. .| ++..|.....++...|++++|.+.++++++..|+++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 3567888999999999888755 33 677788888899999999999999999999999887643
No 211
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.12 Score=49.56 Aligned_cols=351 Identities=12% Similarity=0.075 Sum_probs=189.8
Q ss_pred HhcCChhHHHHHHHHH--------HHcCCCCchhhHHH-----HHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHH
Q 012360 60 NDFSDSGEVLILFKQL--------IFEGIVADKITLVI-----LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126 (465)
Q Consensus 60 ~~~~~~~~a~~~~~~m--------~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (465)
.+..++++-..+-+.+ .+-|++.+..-|.. ++.-+...+.+..|.++-..+...-... ..++....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa 478 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWA 478 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHH
Confidence 3444555544444333 23455555544443 4455555666777777665553221111 45566666
Q ss_pred HHHHhCCC---hHHHHHHHHhhCC-CCCchhHHHHHHHHHhcCChHHHHHHHHHhhcC--------ChHHHHHHHHHHHH
Q 012360 127 LMYAKCKE---MDEALRLFDEMGS-RRNIVSLNILINGYIDMELVDLAREVFDEIVDK--------DIVLWRSMMHGCVK 194 (465)
Q Consensus 127 ~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~ 194 (465)
.-+.+..+ -+-+..+=++++. ..+..+|..+.+-....|+.+-|..+++.-+.. +..-+...+.-..+
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaie 558 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIE 558 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHh
Confidence 66665532 2223333344432 234556777777777888888888777644322 22233444455566
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 012360 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274 (465)
Q Consensus 195 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 274 (465)
.|+.+....++-.+.+. .+...|...+ .+...|..+|.+..+..-.. .+-..|-. ++...+...
T Consensus 559 s~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~~------~l~d~y~q-~dn~~~~a~ 622 (829)
T KOG2280|consen 559 SGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYRQFMRHQDRA------TLYDFYNQ-DDNHQALAS 622 (829)
T ss_pred cCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHHHHHHhhchh------hhhhhhhc-ccchhhhhh
Confidence 66666666666555442 1111121111 22334445555443321110 11112222 222222222
Q ss_pred Hh-cC------CCCChhhHHHHHHHHHHcCCh----------HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 012360 275 FY-KT------DCKDVVTWTTMIEGLANYGLG----------NEALRVFYQMER-KGIKPNEATFVSVLAACRHSGLITE 336 (465)
Q Consensus 275 ~~-~~------~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~~~~~~ 336 (465)
|. +. .++-..........+.+.... .+-+.+.+.+.. .|......+.+--+.-+...|+..+
T Consensus 623 ~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~ 702 (829)
T KOG2280|consen 623 FHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKR 702 (829)
T ss_pred hhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHH
Confidence 11 00 011112222233334333321 111222222222 2333344455666666777899999
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
|.++-.+.+ -|+...|-.-+.++...+++++-+++-+... .+.-|...+.+|.+.|+.++|.+++.+.-.
T Consensus 703 a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-- 772 (829)
T KOG2280|consen 703 AEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-- 772 (829)
T ss_pred HHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--
Confidence 998888776 3888888888899999999998887776665 367788999999999999999988876422
Q ss_pred CCCchhHHHHHHHHhhcCChHHHHHHH
Q 012360 417 NQSHEAYVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 417 p~~~~~~~~l~~~~~~~g~~~~a~~~~ 443 (465)
+.-...+|.+.|++.+|.+.-
T Consensus 773 ------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 773 ------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ------hHHHHHHHHHhccHHHHHHHH
Confidence 226788899999999887654
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.44 E-value=0.00061 Score=61.19 Aligned_cols=97 Identities=14% Similarity=-0.027 Sum_probs=57.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCcc----chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKF----ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 427 (465)
+...++.+..+|...|++++|...|++... +|+. .+|..+..+|...|+.++|+..++++++..+.. |..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~---f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLK---FSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchh---HHHHH
Confidence 456677777777777777777777776433 4543 247777777777777777777777777763221 22111
Q ss_pred H--HHhhcCChHHHHHHHHHHHHhcCC
Q 012360 428 N--FYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 428 ~--~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
. .+....+.++..++++.+.+.|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 111223344556666666665553
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.44 E-value=0.0014 Score=55.98 Aligned_cols=94 Identities=12% Similarity=0.141 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHH
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNE----ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCL 360 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 360 (465)
|...+..+.+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+.+.+...| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334445555555555555554 3332 2444555555555555555555555553211111 12333334
Q ss_pred HHHHHhcCCHHHHHHHHHhCC
Q 012360 361 VDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~ 381 (465)
...+...|+.++|.++|+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555555443
No 214
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0079 Score=50.99 Aligned_cols=110 Identities=11% Similarity=0.055 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHhCCC--CCccchH
Q 012360 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG---LLYQAEEFIKIMPA--EDKFISY 389 (465)
Q Consensus 315 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~ 389 (465)
+-|...|..|..+|...|+.+.|...|.+..+- .++++..+..+..++.... ...++..+|+++.. +.|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 446789999999999999999999999999853 3456667777777665543 35678889998765 3377778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 012360 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427 (465)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 427 (465)
..|...+...|++.+|...|+.|++..|.+.. +..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~-rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP-RRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc-hHHHH
Confidence 88888999999999999999999999977665 44444
No 215
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.35 E-value=0.046 Score=42.78 Aligned_cols=124 Identities=11% Similarity=0.103 Sum_probs=72.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHH
Q 012360 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDC----KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN---EATF 321 (465)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~ 321 (465)
.|+..--..|..+....|+..+|...|++... .|....-.+..+....+++..|...++++.+.. |. +.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 34555555566666666666666666655432 355555556666666677777777777666542 21 2334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 012360 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI 377 (465)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 377 (465)
..+.+.+...|.+.+|+..|+.... .-|+...-......+.+.|+.++|..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4455666677777777777777763 2455444444455566666666555443
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.35 E-value=0.033 Score=52.11 Aligned_cols=91 Identities=15% Similarity=0.072 Sum_probs=48.4
Q ss_pred HHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHH
Q 012360 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204 (465)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 204 (465)
....+...|+.++|..+.-+ .|-.+-+.++-+++...+..+...+...+.+...+..|-++
T Consensus 709 AAEmLiSaGe~~KAi~i~~d-------------------~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeI 769 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGD-------------------HGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEI 769 (1081)
T ss_pred HHHHhhcccchhhhhhhhhc-------------------ccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHH
Confidence 34555666777766665332 33334444444444444444555555555555566666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHH
Q 012360 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243 (465)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (465)
|.+|-+ ...++......+++++|..+-+..
T Consensus 770 F~k~gD---------~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 770 FLKMGD---------LKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHHhcc---------HHHHhhheeecccchHhHhhhhhC
Confidence 665533 223445556666666666655543
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.026 Score=46.71 Aligned_cols=137 Identities=9% Similarity=0.004 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC----CCCChhhHHHH
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR----VQPTIEHFVCL 360 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l 360 (465)
..+.++..+.-.+.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|++..+..+ ..-...+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34456666667788888889999998875555677788888888999999999999997764422 22222233334
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC--CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPAE--DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
...|.-++++..|...+.++... .++...|.-.-+..-.|+..+|++.++.+++..|....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 44566678888888899887653 25555565555556688999999999999998887655
No 218
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.30 E-value=0.057 Score=44.58 Aligned_cols=177 Identities=14% Similarity=0.113 Sum_probs=76.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 012360 189 MHGCVKAKQPEEALELFKKMIDEGVT--PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266 (465)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (465)
...+...|++++|.+.|+.+...-.. --....-.+..++.+.|+++.|...++...+.-.......+...+.+.+.-.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 34455666666666666666653111 1122333444555666666666666666555421111111111111111100
Q ss_pred CHHHHHHHHhcCCCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012360 267 SLEEALVTFYKTDCKD-------VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339 (465)
Q Consensus 267 ~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 339 (465)
...... ....| ...+..++.-|-...-..+|...+..+... -...-..+..-|.+.|.+..|..
T Consensus 92 ~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 92 QIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHH
T ss_pred hCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHH
Confidence 000000 00011 112334444444444555555544444322 01111234566777888888888
Q ss_pred HHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 012360 340 LFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAE 374 (465)
Q Consensus 340 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 374 (465)
-++.+.+.+.-.+ .......++.+|.+.|..+.|.
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888776421111 1233456667777777766443
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.30 E-value=0.00049 Score=46.74 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=45.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHh----CCC---CchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMKL----GNQ---SHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.+++.+...|...|++++|+..++++++. +++ ...++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677778888888888888888888763 222 234678888888888888888888887653
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.29 E-value=0.012 Score=48.51 Aligned_cols=50 Identities=8% Similarity=-0.012 Sum_probs=40.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCch---hHHHHHHHHhhcCChHHHHH
Q 012360 392 LLSACITYSEFDLGKKVANNMMKLGNQSHE---AYVLLSNFYALEGHWTEVAE 441 (465)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~ 441 (465)
++..|.+.|.+..|..-++.+++.-|+++. ....++.+|.+.|..+.+..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 567788999999999999999999988766 46778889999998885543
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.21 E-value=0.037 Score=51.81 Aligned_cols=245 Identities=12% Similarity=0.110 Sum_probs=140.1
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHhh-----------cCChHHHHHHHHHHHHcCCh--hHHHHHHHHHHHcCCC
Q 012360 148 RRNIVSLNILINGYIDMELVDLAREVFDEIV-----------DKDIVLWRSMMHGCVKAKQP--EEALELFKKMIDEGVT 214 (465)
Q Consensus 148 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~ 214 (465)
.|....+.+-+-.|...|.+++|.++----+ .-+...++..-.+|.+..+. -+...-++++.++|-.
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 3444455555566677777777765421111 11233445555566665543 3445556777788888
Q ss_pred CCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------------
Q 012360 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-------------- 280 (465)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------- 280 (465)
|+... +...|+-.|++.+|.++|.+- |.. +..++.|.....++.|.+++.....
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA 700 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA 700 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Confidence 88654 344566788888888888653 221 2234444444445555554433221
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHH------HHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 012360 281 KDVVTWTTMIEGLANYGLGNEALRVFYQ------MERKGIKP---NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351 (465)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~------m~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 351 (465)
.|+.--.+....+...|+.++|..+.-+ +.+-+-+. +..+...+..-+-+...+..|-++|.++-..
T Consensus 701 r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---- 776 (1081)
T KOG1538|consen 701 RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---- 776 (1081)
T ss_pred hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----
Confidence 1221222334555666777766654221 22222122 3345555555556677788888888887632
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccc-----------hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFI-----------SYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 352 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
..+++.....+++++|..+-++.++ .|++. -|...-++|.++|+..+|.++++++..
T Consensus 777 ------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 ------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 3567888889999999999888775 33321 233444667777777778777777654
No 222
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.18 E-value=0.0039 Score=54.78 Aligned_cols=276 Identities=13% Similarity=0.007 Sum_probs=138.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchh----hHHHHHHHhcchhhhhhhhHHHHHHHH----hCCc-cchhhHHHHHH
Q 012360 57 SIYNDFSDSGEVLILFKQLIFEGIVADKI----TLVILFSACARLEKLHYGKTVHCYATK----VGLE-YMLNMENALLL 127 (465)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~ 127 (465)
.-+++.|+....+.+|+...+.|- -|-. .|+.+.++|.-.+++++|++....=+. .|-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 347788888888888888887762 2333 455566666677777777776543211 1100 01111122333
Q ss_pred HHHhCCChHHHHHHHHhh-------CCC-CCchhHHHHHHHHHhcCChHHHHHHHHHhhcC-ChHHHHHHHHHHHHcCCh
Q 012360 128 MYAKCKEMDEALRLFDEM-------GSR-RNIVSLNILINGYIDMELVDLAREVFDEIVDK-DIVLWRSMMHGCVKAKQP 198 (465)
Q Consensus 128 ~~~~~g~~~~A~~~~~~~-------~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 198 (465)
.+--.|.+++|.-...+- +.+ ....++..+...|...|+.-.. ..| +...++.=+ ...+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~-------~~pee~g~f~~ev-----~~al 171 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL-------EAPEEKGAFNAEV-----TSAL 171 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC-------CChhhcccccHHH-----HHHH
Confidence 444455666655443221 100 1112222233333322211000 000 000000000 0012
Q ss_pred hHHHHHHHHHHH----cCCC-CCHHHHHHHHHHhccchhhHhHHHHHHHHHH----cCCC-CChhHHHHHHHHHHhcCCH
Q 012360 199 EEALELFKKMID----EGVT-PDEEVMVSVLSACSSLSNLQYGRLVHRFILQ----NNIT-QDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 199 ~~a~~~~~~~~~----~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~ 268 (465)
+.|.++|.+=++ .|-. .-...|..+-..|.-.|+++.|+...+.-+. .|-. .....+..+..+++-.|++
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc
Confidence 233334332111 1100 0123455555566667788888766554322 2321 1234566778888888888
Q ss_pred HHHHHHHhcCC-------CC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCH
Q 012360 269 EEALVTFYKTD-------CK--DVVTWTTMIEGLANYGLGNEALRVFYQMER----KG-IKPNEATFVSVLAACRHSGLI 334 (465)
Q Consensus 269 ~~a~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~l~~~~~~~~~~ 334 (465)
+.|.+.|+... .. ...+.-.|...|.-..++++|+.++.+-.. .+ ..-....+.+|..+|...|..
T Consensus 252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence 88888776422 22 233555677777777778888877665321 11 112345777888888888888
Q ss_pred HHHHHHHHHhh
Q 012360 335 TEGCQLFRRMG 345 (465)
Q Consensus 335 ~~a~~~~~~~~ 345 (465)
++|+.+.+...
T Consensus 332 ~kAl~fae~hl 342 (639)
T KOG1130|consen 332 RKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHH
Confidence 88887777654
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.06 E-value=0.2 Score=44.29 Aligned_cols=244 Identities=14% Similarity=0.057 Sum_probs=104.2
Q ss_pred CCChHHHHHHHHhhCCCCCchhH--HHHHHHHHhcCChHHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChhHHHHHHH
Q 012360 132 CKEMDEALRLFDEMGSRRNIVSL--NILINGYIDMELVDLAREVFDEIVD--K-DIVLWRSMMHGCVKAKQPEEALELFK 206 (465)
Q Consensus 132 ~g~~~~A~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 206 (465)
.|+++.|.+-|+.|-..|..... ..|.-...+.|..+.|...-+..-. | -...+...+...+..|+|+.|+++++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 45566666666655223322211 1111222244555555555444422 1 22445555555666666666666665
Q ss_pred HHHHcC-CCCCHH--HHHHHHHHh---ccchhhHhHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHhcCC
Q 012360 207 KMIDEG-VTPDEE--VMVSVLSAC---SSLSNLQYGRLVHRFILQNNITQDAF-VKTALIDMYSKCGSLEEALVTFYKTD 279 (465)
Q Consensus 207 ~~~~~~-~~~~~~--~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 279 (465)
.-.... +.++.. .-..|+.+- .-..+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.+++.+=
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 444321 222221 111122111 1112233344333333332 22221 11223345555666666665555543
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhH
Q 012360 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERK-GIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357 (465)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (465)
+..++.- +...|.+..--+.+..-+++..+. .++|| ..+...+..+-...|++..|..--+... ...|....|
T Consensus 291 K~ePHP~--ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~ 365 (531)
T COG3898 291 KAEPHPD--IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAY 365 (531)
T ss_pred hcCCChH--HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHH
Confidence 2211111 112222222222233333322211 12443 3444555566666666666666555554 335666666
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHhCCC
Q 012360 358 VCLVDLLSRA-GLLYQAEEFIKIMPA 382 (465)
Q Consensus 358 ~~l~~~~~~~-g~~~~A~~~~~~~~~ 382 (465)
..|.+.-... |+-.++..++.+...
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHhc
Confidence 5555544433 666666666655443
No 224
>PRK15331 chaperone protein SicA; Provisional
Probab=97.02 E-value=0.055 Score=41.82 Aligned_cols=94 Identities=6% Similarity=-0.030 Sum_probs=71.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCccchHHHHHHHHHhcCC
Q 012360 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM--PAEDKFISYKALLSACITYSE 401 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 401 (465)
..--+...|++++|..+|+-+..- -+-+...+..|..++-..+++++|...|... ....|+...-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 344456789999999999988742 1335667788888888999999999988753 334566666678889999999
Q ss_pred hHHHHHHHHHHHHhCCCCc
Q 012360 402 FDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 402 ~~~a~~~~~~~~~~~p~~~ 420 (465)
.+.|+..|+.+++ .|.+.
T Consensus 121 ~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 121 AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHHHHHHh-CcchH
Confidence 9999999998888 34443
No 225
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.99 E-value=0.23 Score=43.94 Aligned_cols=243 Identities=16% Similarity=0.172 Sum_probs=142.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 012360 193 VKAKQPEEALELFKKMIDEGVTPDEEV--MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270 (465)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (465)
.-.|+++.|.+-|+.|.. .|.... ...|.-..-+.|+.+.|..+-+..-..- +.-.......+...+..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 345777777777777765 122111 1122222345666666666666655443 2224556667777777777777
Q ss_pred HHHHHhcCC-----CCChh--hHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 012360 271 ALVTFYKTD-----CKDVV--TWTTMIEGLA---NYGLGNEALRVFYQMERKGIKPNEA-TFVSVLAACRHSGLITEGCQ 339 (465)
Q Consensus 271 a~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~ 339 (465)
|+++++.-. ++++. .-..|+.+-. -.-+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 777775432 33332 1122222211 123455555555554443 66643 33344578888899999999
Q ss_pred HHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHH----HHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE----EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
+++.+-+. .|.+..+...+ +.+.|+..... +-+..|+ +.+..+...+..+....|++..|..--+.+...
T Consensus 285 ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 99988743 45554443332 34555532221 1233343 345666777778888889998888888887777
Q ss_pred CCCCchhHHHHHHHHhhc-CChHHHHHHHHHHHH
Q 012360 416 GNQSHEAYVLLSNFYALE-GHWTEVAEARRNMKE 448 (465)
Q Consensus 416 ~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 448 (465)
.|.... |..|.+.-... |+-.+++..+-+..+
T Consensus 359 ~pres~-~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 359 APRESA-YLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred CchhhH-HHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 777654 77777776655 888888887775543
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.96 E-value=0.021 Score=43.00 Aligned_cols=88 Identities=9% Similarity=0.051 Sum_probs=55.1
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-C----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch---hHHHHHHHHhh
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPAE-D----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE---AYVLLSNFYAL 432 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 432 (465)
.....+.|++++|.+.|+.+... | ....-..++.+|.+.+++++|...+++.+++.|.++. ++...+.++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455667777777777766541 1 2334556777888888888888888888888877665 33344444444
Q ss_pred cCC---------------hHHHHHHHHHHHH
Q 012360 433 EGH---------------WTEVAEARRNMKE 448 (465)
Q Consensus 433 ~g~---------------~~~a~~~~~~~~~ 448 (465)
+.. ...|..-|+++.+
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 433 4456666665544
No 227
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.085 Score=43.31 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=22.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhC----CCCchhHHHHHHHHhhcCChHHHHH
Q 012360 393 LSACITYSEFDLGKKVANNMMKLG----NQSHEAYVLLSNFYALEGHWTEVAE 441 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~a~~ 441 (465)
|-.+....|+..|..+++...+.+ |.+..+...|+.+| ..|+.+++..
T Consensus 197 ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 197 ILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 333444445555555555544422 44444455555554 3444444443
No 228
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.91 E-value=0.37 Score=45.17 Aligned_cols=382 Identities=10% Similarity=0.086 Sum_probs=223.1
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhH-HHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHH
Q 012360 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL-VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126 (465)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (465)
+...|..++.---.....+.+..++..+... -|-.+-| ......=.+.|..+.+.++|++.+.. ++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4556777776544555556677777777654 4555533 33333335678888888888887764 566666666555
Q ss_pred HHHH-hCCChHHHHHHHHhh----CCC-CCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHH---c--
Q 012360 127 LMYA-KCKEMDEALRLFDEM----GSR-RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK---A-- 195 (465)
Q Consensus 127 ~~~~-~~g~~~~A~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~-- 195 (465)
..+. ..|+.+.....|+.. |.. .....|...|..-...+++.....+++++.+-....++..-..|.+ .
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 4443 457777777777776 322 2455677777777788888888888888866544444433333322 1
Q ss_pred ----CChhHHHHHHHHHHH-------------------cCCCCC-HH--HHHHHHHHh-------ccchhhHhHHHHHHH
Q 012360 196 ----KQPEEALELFKKMID-------------------EGVTPD-EE--VMVSVLSAC-------SSLSNLQYGRLVHRF 242 (465)
Q Consensus 196 ----g~~~~a~~~~~~~~~-------------------~~~~~~-~~--~~~~ll~~~-------~~~~~~~~a~~~~~~ 242 (465)
...+++.++-..... .-..|. .. ..+.+-..+ -...........++.
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~ 280 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEE 280 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhh
Confidence 122222222221111 000111 00 011111111 111111222222222
Q ss_pred HHHc---CC----CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012360 243 ILQN---NI----TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD---VVTWTTMIEGLANYGLGNEALRVFYQMERK 312 (465)
Q Consensus 243 ~~~~---~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 312 (465)
-... .+ +++...|...+..-...|+.+.+.-+|+...-|- ...|-..+......|+.+-|..++....+-
T Consensus 281 ~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 281 GIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred hccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 2221 11 2334577888888889999999999998876542 234555555555558888888887776554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcCCHHHHH---HHHHhCCC-CCccc
Q 012360 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAGLLYQAE---EFIKIMPA-EDKFI 387 (465)
Q Consensus 313 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~-~~~~~ 387 (465)
-++-.+.+-..-...+-..|+++.|..+++.+.++ . |+ ...-..-+....+.|..+.+. +++..... ..+..
T Consensus 361 ~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~ 437 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG 437 (577)
T ss_pred cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc
Confidence 33323322222222334578999999999999975 3 44 333334455667888888888 55544432 22333
Q ss_pred hHHHHHH-----HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCC
Q 012360 388 SYKALLS-----ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435 (465)
Q Consensus 388 ~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 435 (465)
....+.- .+.-.++.+.|..++.++.+..|++...|..++......+.
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 3332222 23346789999999999999999999999999988877763
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.87 E-value=0.0015 Score=44.25 Aligned_cols=60 Identities=7% Similarity=0.102 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCc-cchHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPA--------EDK-FISYKALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
+++.+...|...|++++|++.|++... .++ ..++..+..++...|++++|++.++++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444555555555555554443321 111 345666777777777777777777776653
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0051 Score=54.19 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=59.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.++..+..++.+.+++..|++..++.++.+|+|....+.-+.+|...|+++.|+..|+++.+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 4678888999999999999999999999999999999999999999999999999999987653
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.83 E-value=0.016 Score=43.15 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 313 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
...|+..+..+++.+|+..|++..|+++++...+.++++.+..+|..|++=..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45688888899999999999999999999999888888778888888776443
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.78 E-value=0.08 Score=47.34 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 012360 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211 (465)
Q Consensus 181 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 211 (465)
+-..+..++.+.+-.|+.++|.+.+++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 5567788889999999999999999999875
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.75 E-value=0.12 Score=48.71 Aligned_cols=116 Identities=18% Similarity=0.145 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHhCCCCC------ccchHHHHHHHHHhcCChH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFV-CLVDLLSRAGLLYQAEEFIKIMPAED------KFISYKALLSACITYSEFD 403 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~ 403 (465)
..+.+.|.++++.+.++ -|+...|. .-.+.+...|++++|.+.|+...... ....+-.++..+.-..+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34667788888888753 35544443 34455667788888888887654311 2344556677777888888
Q ss_pred HHHHHHHHHHHhCCCCchhHH-HHHHHHhhcCCh-------HHHHHHHHHHHHh
Q 012360 404 LGKKVANNMMKLGNQSHEAYV-LLSNFYALEGHW-------TEVAEARRNMKEL 449 (465)
Q Consensus 404 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~~~~~ 449 (465)
+|.+.+.++.+.+.-+...|. ..+.++...|+. ++|.+++++....
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 888888888887766555444 345556667777 7788888776543
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.74 E-value=0.015 Score=48.69 Aligned_cols=101 Identities=15% Similarity=0.013 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC-ccchHHHHH
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ-PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED-KFISYKALL 393 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~l~ 393 (465)
.|+.-+.. .+.|++..|...|....+.+.-. .....+..|.+++...|++++|..+|..+.. .| -+..+.-|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45444443 45566777777777777532111 1233445577777777777777777665432 12 345566677
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 394 SACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.+..+.|+.++|...|+++.+..|..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 7777778888888888888887777665
No 235
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.71 E-value=0.017 Score=42.11 Aligned_cols=86 Identities=20% Similarity=0.175 Sum_probs=39.1
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCch---hHHHHHHHHhhcCChH
Q 012360 364 LSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLG-NQSHE---AYVLLSNFYALEGHWT 437 (465)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~---~~~~l~~~~~~~g~~~ 437 (465)
+...|+.+.|++.|..... +.....||.-..++.-.|+.++|+.-+++++++. |...+ .|..-+..|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 3344455555554443321 2234445555555555555555555555555533 22211 2334444455555555
Q ss_pred HHHHHHHHHHHh
Q 012360 438 EVAEARRNMKEL 449 (465)
Q Consensus 438 ~a~~~~~~~~~~ 449 (465)
.|+.-|+...+.
T Consensus 133 ~AR~DFe~AA~L 144 (175)
T KOG4555|consen 133 AARADFEAAAQL 144 (175)
T ss_pred HHHHhHHHHHHh
Confidence 555555444433
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.70 E-value=0.016 Score=52.50 Aligned_cols=96 Identities=9% Similarity=0.055 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHH
Q 012360 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI----EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392 (465)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 392 (465)
+...++.+..+|.+.|++++|+..|++..+ +.|+. ..|..+..+|...|+.++|.+.+++..... ...|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~~f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NLKFSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-chhHHHH
Confidence 457888899999999999999999999884 35653 358889999999999999999998876431 1122211
Q ss_pred HH--HHHhcCChHHHHHHHHHHHHhC
Q 012360 393 LS--ACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 393 ~~--~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.. .+....+.++..++++.+.+.+
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhC
Confidence 11 0112233446666777777666
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.63 E-value=0.11 Score=40.16 Aligned_cols=71 Identities=17% Similarity=0.120 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHH-----cCCCCChhHH
Q 012360 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-----NNITQDAFVK 255 (465)
Q Consensus 184 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 255 (465)
+...++..+...|+++.|..+.+.+.... +.+...+..+|.++...|+...|...|+.+.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44455566666777777777777776652 33566677777777777777777777666543 3666665543
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.016 Score=48.48 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=74.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC---CchhHHHHH
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAE-D----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQ---SHEAYVLLS 427 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~ 427 (465)
.|+.-+. +.+.|++..|...|.....+ | .+..+-=|+.++...|++++|..+|..+.+..|. .+..+..|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4665554 55678899999999876542 2 2223344889999999999999999999996655 456799999
Q ss_pred HHHhhcCChHHHHHHHHHHHHh
Q 012360 428 NFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 428 ~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
....+.|+.++|...|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=96.55 E-value=0.046 Score=49.70 Aligned_cols=142 Identities=6% Similarity=0.026 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhc---------CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc
Q 012360 299 GNEALRVFYQMER-KGIKPNE-ATFVSVLAACRHS---------GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367 (465)
Q Consensus 299 ~~~a~~~~~~m~~-~g~~p~~-~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (465)
.+.|..+|.+... ....|+. ..|..+..++... .+..+|.+.-++..+. -+-|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 4567778887772 2235553 5666666554332 2345566666666642 234666666677767777
Q ss_pred CCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHhhcCChHHHHHHH
Q 012360 368 GLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA--YVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 368 g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~a~~~~ 443 (465)
++++.|..+|++... +| ...+|......+.-.|+.++|.+.++++++++|....+ ....++.|...+ .++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 778888888887654 44 44556666666667888888888888888888765442 223333555554 45555544
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.13 Score=44.35 Aligned_cols=150 Identities=10% Similarity=-0.026 Sum_probs=90.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH----HHHHHHHhcCCH
Q 012360 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLL 370 (465)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 370 (465)
..|+..+|-..++++.+. .+.|...+...=.+|...|+...-...++++.. ...++...|. .+..++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 346667777777777765 233445555566777777777777777777765 3344443333 344555677778
Q ss_pred HHHHHHHHhCCCCC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC----CCchhHHHHHHHHhhcCChHHHHHHHH
Q 012360 371 YQAEEFIKIMPAED--KFISYKALLSACITYSEFDLGKKVANNMMKLGN----QSHEAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 371 ~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
++|++.-++...-. |...-.++...+--.|+..++.++..+-...-. --..-|...+-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 88887777765422 333444555555567777777776665433111 111235566666777777888877777
Q ss_pred HHH
Q 012360 445 NMK 447 (465)
Q Consensus 445 ~~~ 447 (465)
+=.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 443
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.53 Score=40.20 Aligned_cols=146 Identities=11% Similarity=0.048 Sum_probs=89.2
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHH
Q 012360 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY 371 (465)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 371 (465)
.....|++.+|..+|+...... .-+...-..++.+|...|+.+.|..++..+..+ --.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 3456677777777777766652 112345556677777778888887777776542 11111111223345555555555
Q ss_pred HHHHHHHhCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHhhcCChHHH
Q 012360 372 QAEEFIKIMPAED-KFISYKALLSACITYSEFDLGKKVANNMMKLG--NQSHEAYVLLSNFYALEGHWTEV 439 (465)
Q Consensus 372 ~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a 439 (465)
+...+-.+.-..| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..++..+.--|.-+.+
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 5555555555555 55666667777777888888877777776644 45556677777777777755543
No 242
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=1.1 Score=43.47 Aligned_cols=153 Identities=17% Similarity=0.116 Sum_probs=95.9
Q ss_pred HHHHHHhCCChHHHHHHHHhh-CCCC---CchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhH
Q 012360 125 LLLMYAKCKEMDEALRLFDEM-GSRR---NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200 (465)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 200 (465)
-++.+.+.+.+++|+..-+.. +..| -...+..+|..+.-.|++++|-...-.|...+..-|...+..+...++...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 356667778888888888777 4444 234567788888888888888888888888888888888887777777665
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHH------------------HHHHcCCCCChhHHHHHHHHH
Q 012360 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR------------------FILQNNITQDAFVKTALIDMY 262 (465)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------------------~~~~~~~~~~~~~~~~l~~~~ 262 (465)
...++= ......+...|..++..+.. .+...-.++.+ +..+. .-+......|+..|
T Consensus 442 Ia~~lP---t~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 442 IAPYLP---TGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLY 515 (846)
T ss_pred hhccCC---CCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHH
Confidence 444321 11111234455555555444 22211111111 11111 11223445588999
Q ss_pred HhcCCHHHHHHHHhcCCCCCh
Q 012360 263 SKCGSLEEALVTFYKTDCKDV 283 (465)
Q Consensus 263 ~~~~~~~~a~~~~~~~~~~~~ 283 (465)
...++++.|+..+-....+++
T Consensus 516 l~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHccChHHHHHHHHhccChHH
Confidence 999999999999988876544
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.43 Score=40.73 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=89.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHH---HHHHHHhcCCh
Q 012360 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKA---LLSACITYSEF 402 (465)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~ 402 (465)
......|+..+|...|+..... .+-+...-..++++|...|+.+.|..++..++.+....-+.. -+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 4456789999999999999863 334566777899999999999999999999987543333333 33444454444
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 403 DLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 403 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.+... +++-...+|++...-..++..+...|+.++|.+.+=.+.+.
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44333 34445678999999999999999999999998866655443
No 244
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=1.3 Score=43.53 Aligned_cols=177 Identities=11% Similarity=0.049 Sum_probs=117.1
Q ss_pred hhhHHHHHHHccCChHHHHHHhccCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc
Q 012360 20 VGNSLIHFYGRMALFTDARVLFDKMPFRDV---GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96 (465)
Q Consensus 20 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 96 (465)
....-++.+.+...++-|+.+.+.-.-+.. ........-+.+.|++++|..-|-+-... +.| ..++.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 444556777777778888887766443211 12333445567889999999988876643 233 246677788
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCC-chhHHHHHHHHHhcCChHHHHHHHH
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN-IVSLNILINGYIDMELVDLAREVFD 175 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 175 (465)
..+...--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. ... ..-....+..+.+.+-.++|.-+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 88888888899999998854 44445789999999999999888887753 111 1124455666666777777766554
Q ss_pred HhhcCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012360 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208 (465)
Q Consensus 176 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 208 (465)
+... +......+ +-..+++++|++.+..+
T Consensus 488 k~~~-he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 4433 33333333 34567788888888766
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.06 Score=46.32 Aligned_cols=116 Identities=11% Similarity=0.028 Sum_probs=94.8
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHH----HHHHHHhcCCh
Q 012360 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKA----LLSACITYSEF 402 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~----l~~~~~~~~~~ 402 (465)
...|+..+|-..++++.+ ..|.|...+..-=+++.-.|+.+.-...++++.. +++.+.|.- +.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 346888888888999986 5566777777777889999999999988888764 456554433 33345689999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 403 DLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 403 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
++|++.-+++.+++|.+......+...+...|++.++.++..+-
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999999999999999999999999999988754
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.24 E-value=0.37 Score=36.95 Aligned_cols=127 Identities=11% Similarity=0.057 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (465)
....++..+...+.+.....+++.+...+ ..+....+.++..|++.+ ..+....++. . .+.......+..|
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHH
Confidence 34456666666777778888888777765 345667777777777653 3444444442 1 1223334466677
Q ss_pred HhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhc-CChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY-SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
.+.+.++++..++.++.. +...+..+... ++++.|++++.+ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 777777777777777652 33344444444 677777777665 345556666666554
No 247
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.21 E-value=1.4 Score=43.40 Aligned_cols=115 Identities=8% Similarity=-0.028 Sum_probs=67.7
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH
Q 012360 296 YGLGNEALRVFYQMERKG-IKPNE--ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 372 (465)
..+.+.|...+....... ..+.. .....+.......+..+++...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 456688888888764442 22222 23344443333433366777777765532 2344445555556668888888
Q ss_pred HHHHHHhCCCCC-ccchH-HHHHHHHHhcCChHHHHHHHHHHH
Q 012360 373 AEEFIKIMPAED-KFISY-KALLSACITYSEFDLGKKVANNMM 413 (465)
Q Consensus 373 A~~~~~~~~~~~-~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~ 413 (465)
+...+..|.... +..-| -=+.+++...|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888875421 11111 114555566788888988888873
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.19 E-value=0.013 Score=31.94 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 419 (465)
.|..+...+...|++++|++.+++++++.|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 46667777788888888888888888887764
No 249
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.18 E-value=0.96 Score=41.15 Aligned_cols=149 Identities=15% Similarity=-0.004 Sum_probs=82.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC--hhh
Q 012360 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP---NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT--IEH 356 (465)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 356 (465)
...+|..++..+.+.|.++.|...+.++...+..+ .+.....-+......|+..+|+..++..... .+... ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44577778888888888888888888877643221 2334444556667778888888888877752 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCccchHHHHHHHHHhc------CChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 357 FVCLVDLLSRAGLLYQAEEF-IKIMPAEDKFISYKALLSACITY------SEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
...+...+.. ..+..... ........-...+..+..-.... +..+++.+.|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000112233333333334 788999999999999999888888888877
Q ss_pred Hhhc
Q 012360 430 YALE 433 (465)
Q Consensus 430 ~~~~ 433 (465)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7654
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.18 E-value=0.63 Score=38.97 Aligned_cols=56 Identities=11% Similarity=0.085 Sum_probs=44.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCch---hHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHE---AYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
.+.+.|.+.|.+..|..-++++++.-|+... .+..+..+|.+.|..++|.+.-+-+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 3566788999999999999999997766554 4566778899999999988866544
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.17 E-value=0.2 Score=37.89 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=58.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 290 IEGLANYGLGNEALRVFYQMERKGIKP----NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 290 ~~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
.....+.|++++|.+.|+.+... -| .......++.+|.+.+++++|...+++.++.+.-.|++ -|...+.+++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r--yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR--YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc--CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHH
Confidence 34445566667776666666654 22 22344556666666667777666666666543333332 2333333333
Q ss_pred hcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.-...+... ..+.. .=...+....|..-|+++++.-|++.-
T Consensus 94 ~~~~~~~~~---~~~~~------------~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 94 YYEQDEGSL---QSFFR------------SDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHhhhHH---hhhcc------------cccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 222211111 11110 000112355788888899988888763
No 252
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.10 E-value=0.01 Score=32.35 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
+|..++.++...|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 5677777888888888888888888888775
No 253
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.07 E-value=0.73 Score=38.72 Aligned_cols=219 Identities=16% Similarity=0.108 Sum_probs=96.8
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhccchhhHhHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHH
Q 012360 196 KQPEEALELFKKMIDEGVTP-DEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALV 273 (465)
Q Consensus 196 g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 273 (465)
+....+...+.......... ....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444444444444432211 2344444455555555555555555555432 122333444445555555555555555
Q ss_pred HHhcCCC--CCh-hhHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 274 TFYKTDC--KDV-VTWTTMIE-GLANYGLGNEALRVFYQMERKGIKP----NEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 274 ~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
.+..... ++. ........ .+...++++.|...+.+.... .| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 5554432 111 11222222 455555555555555555332 22 12222233333444555555555555555
Q ss_pred cCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc-cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 346 GVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK-FISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 346 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
.. .+. ....+..+...+...++++.|...+..... .|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 31 112 234444455555555555555555544432 111 222333333333444455555555555555444
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.02 E-value=0.36 Score=44.95 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=62.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHH
Q 012360 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201 (465)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 201 (465)
.+.++..+-+.|-.+.|+++-. |. ..-.....+.|+++.|.++.++.. +...|..|.....+.|+++-|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~------D~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT------DP---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC------Ch---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 4455555555555555555522 11 122333445555555555443333 444666666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 012360 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276 (465)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 276 (465)
.+.|.+..+ +..++-.|...|+.+.-.++.+.....|. ++....++...|+.++..+++.
T Consensus 367 e~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 367 EECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 666655432 34444445555555555555555554441 2333344444455555555543
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.01 E-value=0.058 Score=45.24 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=70.7
Q ss_pred HHHhccCC--CCCcccHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcch-------------
Q 012360 38 RVLFDKMP--FRDVGSWNTLMSIYNDF-----SDSGEVLILFKQLIFEGIVADKITLVILFSACARL------------- 97 (465)
Q Consensus 38 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~------------- 97 (465)
...|+... ++|-.+|-..+..+... +..+-....++.|.+.|+..|..+|+.|++.+-+.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 56777888888777643 56677777889999999999999999999887542
Q ss_pred ---hhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCC
Q 012360 98 ---EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134 (465)
Q Consensus 98 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 134 (465)
.+-+-+..++++|...|+.||..+-..|++++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2334466777777777777777777777777776665
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.97 E-value=0.59 Score=43.02 Aligned_cols=103 Identities=12% Similarity=0.098 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCc--cchHHHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDK--FISYKALLS 394 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~~l~~ 394 (465)
..=..+..++.+.|+.++|++.++++.+.+...........|+.++...+.+.++..++.+-.+ -|. ..+|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 3335577777889999999999999986432222345677899999999999999999988753 122 234554433
Q ss_pred HHHhcCC---------------hHHHHHHHHHHHHhCCCCch
Q 012360 395 ACITYSE---------------FDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 395 ~~~~~~~---------------~~~a~~~~~~~~~~~p~~~~ 421 (465)
-+...++ -..|.+.+.++++.+|..+.
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 2222222 13466889999998877664
No 257
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.90 E-value=0.16 Score=37.93 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCChHHHHHHHH--HhhcCChHHHHHHHHHHHHc
Q 012360 119 LNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVFD--EIVDKDIVLWRSMMHGCVKA 195 (465)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~l~~~~~~~ 195 (465)
..++..+|.++++.|+.+....+++.. |+..+...-. +. +. .-..|+..+..+++.+|+.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~---------~~-------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKE---------GD-------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcccc---------Cc-------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 345566666667777776666666655 3332211000 00 00 01235666666666666666
Q ss_pred CChhHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Q 012360 196 KQPEEALELFKKMID-EGVTPDEEVMVSVLSA 226 (465)
Q Consensus 196 g~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~ 226 (465)
|++..|+++++...+ -+++.+..++..|+.-
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 666666666666554 2455555555555543
No 258
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.88 E-value=0.033 Score=44.13 Aligned_cols=99 Identities=9% Similarity=-0.073 Sum_probs=51.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHH
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTI-----EHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACI 397 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~ 397 (465)
..-+++.|++++|..-|..+.. -+++.. ..|..-.-++.+.+.++.|++-..+... .| ....+..-..+|-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 3446667777777777777764 223221 2233333455566666666655544432 22 1111222233455
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhHHH
Q 012360 398 TYSEFDLGKKVANNMMKLGNQSHEAYVL 425 (465)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 425 (465)
+...+++|++-|+++.+..|....+...
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 5566666666666666666655543333
No 259
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.86 E-value=1.7 Score=41.11 Aligned_cols=338 Identities=11% Similarity=0.026 Sum_probs=185.8
Q ss_pred chhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHH
Q 012360 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILING 160 (465)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 160 (465)
+-..+..++.---...+.+.+..++..++.. .|.--.-|......=.+.|..+.+.++|++- +++.+...|...+..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3345566665555556667777777777754 2333345666667777889999999999987 666677777777665
Q ss_pred HH-hcCChHHHHHHHHHhhcC------ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc---cc
Q 012360 161 YI-DMELVDLAREVFDEIVDK------DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS---SL 230 (465)
Q Consensus 161 ~~-~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~ 230 (465)
+. ..|+.+...+.|+....- +...|...|.--..++++.....++++.++. | ...|+.....|. +.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhc
Confidence 55 456777777888777442 5567778888778888999999999998873 2 112222222111 11
Q ss_pred ------hhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhcCCCCChh---hHHHH-------HHHH
Q 012360 231 ------SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG-SLEEALVTFYKTDCKDVV---TWTTM-------IEGL 293 (465)
Q Consensus 231 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~---~~~~l-------~~~~ 293 (465)
...+++.++-....... .....+ ..+.-....+....|... ..+.+ -..+
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~ 265 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVY 265 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHH
Confidence 11222222222211100 000000 111111111111111100 01111 1112
Q ss_pred HHcCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh
Q 012360 294 ANYGLGNEALRVFYQMERK---GIKP----NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~---g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (465)
............++.-.+. .++| +..+|...+.-....|+.+.+.-+|++..- .+..-...|-..+.-...
T Consensus 266 ~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~ 343 (577)
T KOG1258|consen 266 QKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMES 343 (577)
T ss_pred HhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHH
Confidence 2222222233333332221 1222 345667777777777888888888887764 333445556566666666
Q ss_pred cCCHHHHHHHHHhCCC--CCccchHHHHHHHHH-hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHH
Q 012360 367 AGLLYQAEEFIKIMPA--EDKFISYKALLSACI-TYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 440 (465)
.|+.+-|..++.+... .+.......+-..+. ..|+++.|..+++...+.-|....+-..-+....+.|+.+.+.
T Consensus 344 ~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 344 SGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 6887777777665433 233333333333333 3568888888888887766766665566666677777777766
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.82 E-value=0.037 Score=40.43 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=52.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.-++...|+.+.|++.|.+++.+-|..++.|+.-+.++.-+|+.++|+.-+++..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 446778999999999999999999999999999999999999999999999887664
No 261
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.72 E-value=0.16 Score=42.71 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=63.9
Q ss_pred cCChHHHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch----------------hhHhHH
Q 012360 179 DKDIVLWRSMMHGCVK-----AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS----------------NLQYGR 237 (465)
Q Consensus 179 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~ 237 (465)
++|..+|-..+..|.. .++++=....++.|.+.|+.-|..+|+.|+..+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3455566665555543 3556666666777777777777778877777765432 235678
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 012360 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
+++++|...|+-||..+-..++.++.+.+-.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 8899999999999999888899888877653
No 262
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.72 E-value=0.56 Score=34.64 Aligned_cols=140 Identities=12% Similarity=0.069 Sum_probs=82.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH
Q 012360 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 372 (465)
+.-.|..++..++..+.... .+..-++.+|--....-+-+-..+.++.+-+-+.+.+-. -...++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc---
Confidence 34467788888888877654 245566666655555566666677777766543333211 11234444444432
Q ss_pred HHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 373 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
+....+..+..+...|+-|.-.++++.+.+.+..+|.....++.+|.+.|+..++.+++++.=+.|+
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2334555667777888888888888888876677777788889999999999999888888777765
No 263
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.59 E-value=0.76 Score=35.23 Aligned_cols=126 Identities=13% Similarity=0.115 Sum_probs=67.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHH
Q 012360 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130 (465)
Q Consensus 51 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (465)
.-..++..+...+.+.....+++.+...+ ..+...++.++..+++.+. ......+.. ..+......+++.|.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHH
Confidence 34566677777777777777777777665 3555667777777765432 222233221 122233344666666
Q ss_pred hCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhc-CChHHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM-ELVDLAREVFDEIVDKDIVLWRSMMHGC 192 (465)
Q Consensus 131 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 192 (465)
+.+-++++.-++.+++. +...+..+... ++.+.|.+.+.+. .+...|..++..+
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~ 135 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKAL 135 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 66667777766666531 22222223322 5555555555442 2334454444443
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.51 E-value=3.5 Score=42.42 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=56.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012360 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 337 (465)
.+..-.+.|-+.+|+.++..-.+.-...|.+....+.....+++|.-.|+..-+. .-.+.+|..+|+|.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHH
Confidence 3344445556666665554333222334444444445555566655555432111 1234555666666666
Q ss_pred HHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 012360 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383 (465)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (465)
+.+..++.. +-..-..+-..|+..+...+++-+|-++..+...+
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 666665542 11111122245555666666666666666655543
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.49 E-value=0.078 Score=45.28 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
++..++..+...|+++.+.+.+++.+...|-+...|..++.+|.+.|+...|+..++.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344455555556666666666666666666666666666666666666666666665553
No 266
>PRK11906 transcriptional regulator; Provisional
Probab=95.31 E-value=0.95 Score=41.56 Aligned_cols=142 Identities=11% Similarity=0.025 Sum_probs=95.8
Q ss_pred CHHHHHHHHhcCC---CCC---hhhHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012360 267 SLEEALVTFYKTD---CKD---VVTWTTMIEGLANY---------GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331 (465)
Q Consensus 267 ~~~~a~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 331 (465)
..+.|+.+|.+.. +-| ...|..+..++... ....+|.++.++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4567888888766 333 44555555444322 23456677777777774 44777888888888888
Q ss_pred CCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHh-CCCCCcc---chHHHHHHHHHhcCChHHHH
Q 012360 332 GLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAGLLYQAEEFIKI-MPAEDKF---ISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~---~~~~~l~~~~~~~~~~~~a~ 406 (465)
++++.|..+|++... +.|+ ...|......+.-.|+.++|.+.+++ +.-+|.. ......+..|+.. ..++|+
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 889999999999984 4454 56666666677789999999999998 5546632 2333344455554 467777
Q ss_pred HHHHHHH
Q 012360 407 KVANNMM 413 (465)
Q Consensus 407 ~~~~~~~ 413 (465)
.+|-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 7776533
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.31 E-value=0.83 Score=42.62 Aligned_cols=158 Identities=13% Similarity=0.046 Sum_probs=93.0
Q ss_pred HHHHhcCChhHHHHHHHH-HHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh
Q 012360 57 SIYNDFSDSGEVLILFKQ-LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135 (465)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 135 (465)
....-.++++++.++.+. -.-..+ +......++..+-+.|-.+.|+.+-..- ..-.....+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCH
Confidence 344556777776666641 111111 2334666777777777777777664332 1234455677888
Q ss_pred HHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 012360 136 DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215 (465)
Q Consensus 136 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 215 (465)
+.|.++.++. ++...|..|.+...+.|+++-|++.|.+... +..|.-.|.-.|+.+.-.++.+.....|-
T Consensus 335 ~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 335 DIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp HHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 8888776664 3666888888888888888888888877753 55666677788888777777776666542
Q ss_pred CHHHHHHHHHHhccchhhHhHHHHHHH
Q 012360 216 DEEVMVSVLSACSSLSNLQYGRLVHRF 242 (465)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (465)
++....++.-.|+.++..+++..
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444455556777776666544
No 268
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.24 E-value=0.31 Score=42.68 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=69.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCC----CCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-----cc
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYR----VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM-------PAED-----KF 386 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-----~~ 386 (465)
++..++...+.++++++.|+.+.+--. -.....++..|...|.+..++++|.-+..+. .-++ ..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 345666666677777777776642100 0112345666777777777777665544332 1111 11
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMKLG------NQSHEAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
.+...|.-++...|..-+|.+..+++.++. |........+++.|...|+.+.|+.-|+.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 122334456666777777777777776632 23333456677777777777777666654
No 269
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.18 E-value=1.6 Score=36.55 Aligned_cols=216 Identities=18% Similarity=0.076 Sum_probs=119.7
Q ss_pred hhhHhHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChhhHHHHHHHHHHcCChHHHHH
Q 012360 231 SNLQYGRLVHRFILQNNIT-QDAFVKTALIDMYSKCGSLEEALVTFYKTD-----CKDVVTWTTMIEGLANYGLGNEALR 304 (465)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~ 304 (465)
+....+...+......... ............+...+++..+...+.... ......+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443221 124455566666666677776666665543 2233455555556666666777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHhhcCCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 305 VFYQMERKGIKPNEATFVSVLA-ACRHSGLITEGCQLFRRMGGVYRV--QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 305 ~~~~m~~~g~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
.+.........+. ........ .+...|+++.+...+.+.... .. ......+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7776665432221 11222222 566677777777777776431 11 1223333344444556677777777766654
Q ss_pred C-CC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 382 A-ED--KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 382 ~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
. .+ ....+..+...+...++++.|...+.......|.....+..+...+...|.++++...+++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 22 2445666666666666777777777777777766444455555555555666777666665543
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.07 E-value=2.1 Score=37.36 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=9.0
Q ss_pred hCCChHHHHHHHHhh
Q 012360 131 KCKEMDEALRLFDEM 145 (465)
Q Consensus 131 ~~g~~~~A~~~~~~~ 145 (465)
+.|+++.|..++.+.
T Consensus 5 ~~~~~~~A~~~~~K~ 19 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKA 19 (278)
T ss_pred hhCCHHHHHHHHHHh
Confidence 456666666666655
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.05 E-value=0.051 Score=30.08 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 012360 389 YKALLSACITYSEFDLGKKVANNMM 413 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (465)
|..|...|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555533
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.94 E-value=0.06 Score=29.18 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
+|..+...+...|++++|.+.|+++++..|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666777777888888888888888887774
No 273
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.91 E-value=1.6 Score=34.96 Aligned_cols=116 Identities=6% Similarity=-0.046 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh----hhHHHHHHHHHhcCCHHHHH
Q 012360 301 EALRVFYQMERKGIKPNEATFV--SVLAACRHSGLITEGCQLFRRMGGVYRVQPTI----EHFVCLVDLLSRAGLLYQAE 374 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 374 (465)
+......++....-.....++. .+...+...+++++|...++..... +.|. ..-..|.+.....|.+|+|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4444555555442111222222 3346677888888888888877742 2221 12234566777888888888
Q ss_pred HHHHhCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 012360 375 EFIKIMPAED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 375 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 419 (465)
..++....+. .......-+..+...|+-++|..-|+++++.++++
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 8888877543 22233445567788888888888888888876443
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.88 E-value=0.71 Score=36.81 Aligned_cols=125 Identities=15% Similarity=0.056 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH-----HHHHHHHhcCCHHHHHHHHHhCCCCCccchHH---
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV-----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK--- 390 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--- 390 (465)
..|..++.+.. .+.. +.....+++... +...+|. .+...+..+|++++|...++.....+....+.
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~----n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~ 128 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQA----NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhh----ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHH
Confidence 34444554443 2333 455555666543 2122232 45567889999999999999776555333333
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 391 --ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 391 --~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.|.+.....|.+|+|+..++...+.+=. +.....-++++...|+.++|+.-|++....+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3556677899999999998865543211 1225567899999999999999999888776
No 275
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.85 E-value=1 Score=35.10 Aligned_cols=129 Identities=16% Similarity=0.175 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChh-hHHHH-
Q 012360 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA-TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE-HFVCL- 360 (465)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l- 360 (465)
..|..-+. +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.... .|-+. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHH
Confidence 34444443 466788899999999999887654332 222334556778999999999999986522 23221 11122
Q ss_pred -HHHHHhcCCHHHHHHHHHhCCCCCcc---chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 361 -VDLLSRAGLLYQAEEFIKIMPAEDKF---ISYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 361 -~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
.-++...|.++....-.+.+..+.++ ..-..|.-+-.+.|++.+|.+.|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23456788899888888877654432 3345666777789999999999998877
No 276
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.75 E-value=2.6 Score=36.80 Aligned_cols=157 Identities=14% Similarity=0.040 Sum_probs=83.8
Q ss_pred HhcCChhHHHHHHHHHHHcC--CCCchh------hHHHHHHHhcchh-hhhhhhHHHHHHHHh----C----Cccc----
Q 012360 60 NDFSDSGEVLILFKQLIFEG--IVADKI------TLVILFSACARLE-KLHYGKTVHCYATKV----G----LEYM---- 118 (465)
Q Consensus 60 ~~~~~~~~a~~~~~~m~~~~--~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~---- 118 (465)
.+.|+.+.|..++.+..... ..|+.. .|+.-.. ....+ +++.|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46777788888777775432 223222 1222222 22334 677776666665443 1 1122
Q ss_pred -hhhHHHHHHHHHhCCChHH---HHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHHHHHHHHHhhcC---ChHHHHHHH
Q 012360 119 -LNMENALLLMYAKCKEMDE---ALRLFDEM-GSRRN-IVSLNILINGYIDMELVDLAREVFDEIVDK---DIVLWRSMM 189 (465)
Q Consensus 119 -~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~ 189 (465)
..++..++.+|...+..+. |..+++.+ +.-|+ ...+..-+..+.+.++.+.+.+.+.+|+.. ....+...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 2455677788887776554 44444445 22333 444555566666678888888888887543 234444444
Q ss_pred HHHHH--cCChhHHHHHHHHHHHcCCCCCH
Q 012360 190 HGCVK--AKQPEEALELFKKMIDEGVTPDE 217 (465)
Q Consensus 190 ~~~~~--~g~~~~a~~~~~~~~~~~~~~~~ 217 (465)
..+.. ......|...+..+....+.|..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 44421 22334555666665544444444
No 277
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.64 E-value=6.3 Score=40.72 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=77.0
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH----HHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 012360 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVL----SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
-+.|.+++|+.++ .|+...+.... ..+.....++.|.-.|+..-+. .--+.+|..+|+|
T Consensus 919 ~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 919 KKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDW 981 (1265)
T ss_pred Hhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccH
Confidence 3444444444443 45655554444 3445566677777666654332 2356778888888
Q ss_pred HHHHHHHhcCCCCChhh---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 269 EEALVTFYKTDCKDVVT---WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 269 ~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
.+|+.+...+..+-... -..|+.-+...+++-+|-++..+-... | ...+..+++...+++|+.+.....
T Consensus 982 r~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 982 REALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 88888888776542222 256777788888888888877665432 1 123344556666777766665544
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.58 E-value=0.57 Score=41.11 Aligned_cols=165 Identities=8% Similarity=0.019 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHH----HHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---hhh
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQ----MERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT---IEH 356 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~----m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 356 (465)
++..+..+.++.|.+++++..--. ..+.. -..--..|..+.+++.+..++.+++.+-..-....|..|. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 444455556666666655432211 11110 0011235566667776766777777766655543344341 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC----CCCch---
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFISYKALLSACITYSEFDLGKKVANNMMKLG----NQSHE--- 421 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~--- 421 (465)
...+..++...+.++++++.|+.... .. ...++..|...|....|+++|.-+..++.++- ..+..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 44577788888899999999987532 22 33578899999999999999999998887743 23322
Q ss_pred ---hHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 422 ---AYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 422 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
....++.++...|+..+|.+.-++..+.
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4567788899999999999888776543
No 279
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.50 E-value=1.4 Score=32.63 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCC
Q 012360 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248 (465)
Q Consensus 185 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 248 (465)
....+......|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344556667777777777777776642 355666666777777777777777777777776664
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.45 E-value=0.057 Score=29.88 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 422 AYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 422 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+|..|+.+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 37889999999999999999999854
No 281
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.44 E-value=2.3 Score=34.71 Aligned_cols=158 Identities=11% Similarity=0.010 Sum_probs=76.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHH
Q 012360 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361 (465)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 361 (465)
+..||-+.--+...|+++.|.+.|+...+. .|. ..+...-.-++.-.|++.-|.+-+...-+...-.|-...|..+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 446666666677777777777777777665 332 11221112223345777777666655554322223333333222
Q ss_pred HHHHhcCCHHHHHHH-HHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-------chhHHHHHHHHhhc
Q 012360 362 DLLSRAGLLYQAEEF-IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS-------HEAYVLLSNFYALE 433 (465)
Q Consensus 362 ~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 433 (465)
+ +.-++.+|..- .++... -+..-|...+-.+.- |+.. ...+++++.+-..++ ..+|..|+.-+...
T Consensus 177 E---~k~dP~~A~tnL~qR~~~-~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAEK-SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---hhCCHHHHHHHHHHHHHh-ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 1 23345555543 333332 222233222222211 1111 122333333322222 22577777778888
Q ss_pred CChHHHHHHHHHHHH
Q 012360 434 GHWTEVAEARRNMKE 448 (465)
Q Consensus 434 g~~~~a~~~~~~~~~ 448 (465)
|+.++|..+|+....
T Consensus 251 G~~~~A~~LfKLaia 265 (297)
T COG4785 251 GDLDEATALFKLAVA 265 (297)
T ss_pred ccHHHHHHHHHHHHH
Confidence 888888887776544
No 282
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.39 E-value=4.8 Score=38.24 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHhhc--CChHHHHHH-HHHHHHcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHhccchhhHhHHHH
Q 012360 166 LVDLAREVFDEIVD--KDIVLWRSM-MHGCVKAKQPEEALELFKKMIDEG---VTPDEEVMVSVLSACSSLSNLQYGRLV 239 (465)
Q Consensus 166 ~~~~a~~~~~~~~~--~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~ 239 (465)
..+.|.++++.+.. |+...|... .+.+...|++++|++.|++..... .+.....+--+...+.-..++++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34445555555433 333333222 233344455555555555433210 011112222333344445555555555
Q ss_pred HHHHHH
Q 012360 240 HRFILQ 245 (465)
Q Consensus 240 ~~~~~~ 245 (465)
+..+.+
T Consensus 328 f~~L~~ 333 (468)
T PF10300_consen 328 FLRLLK 333 (468)
T ss_pred HHHHHh
Confidence 555544
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.29 E-value=2.1 Score=33.68 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHH
Q 012360 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245 (465)
Q Consensus 184 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (465)
.+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666777777777766654221 111123345555555555544444444443
No 284
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.16 E-value=1.5 Score=40.48 Aligned_cols=69 Identities=10% Similarity=0.038 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCchh
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED---KFISYKALLSACITYSEFDLGKKVANNMMKLG-NQSHEA 422 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~ 422 (465)
...-..|..++.+.|+.++|.+.++++.. .| +......|+.++...+.+.++..++.+.-+.. |.+.+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti 332 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATI 332 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHH
Confidence 33445677777788888888888887753 33 23356678888888888888888888876554 666553
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.88 E-value=2.2 Score=33.12 Aligned_cols=50 Identities=12% Similarity=0.029 Sum_probs=23.2
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEH-FVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
..++.+++..+++.+. -+.|.... -..-...+...|++.+|..+|+++..
T Consensus 22 ~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4455555555555554 22332111 11222334555666666666665544
No 286
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.87 E-value=0.14 Score=27.37 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=18.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 419 (465)
.++.++.+.|++++|.+.|+++++..|++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 44555666667777777777776666653
No 287
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.63 E-value=8.3 Score=38.29 Aligned_cols=175 Identities=15% Similarity=0.081 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhcCChHH----HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012360 154 LNILINGYIDMELVDLAREVFDEIVDKDIVL----WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229 (465)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (465)
...-+..+++...++-|..+-+.-.. +..+ .....+.+.+.|++++|...|-+-... +.|. .++.-|..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 34445555566666666665544422 2222 222334455678888887777665543 3332 24445566
Q ss_pred chhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh--hHHHHHHHHHHcCChHHHHHHHH
Q 012360 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV--TWTTMIEGLANYGLGNEALRVFY 307 (465)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 307 (465)
......-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .... -....+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 66666677777777777754 34455667888888888888777777665 2222 23445555666666666665544
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 308 ~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
+... +......++ -..+++++|+++++.+.
T Consensus 488 k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 488 KFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred Hhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 4321 233333333 34578888888877664
No 288
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.62 E-value=0.18 Score=29.37 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=26.7
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 421 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
..+..++.+|.+.|++++|.+++++..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999987753
No 289
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.45 E-value=4.2 Score=34.28 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=32.2
Q ss_pred HHHHcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc
Q 012360 191 GCVKAKQPEEALELFKKMIDEGV--TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 191 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (465)
.-.+.|++++|.+.|+.+..+.+ +-...+...++.++.+.++++.|....++....
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34566677777777776665411 112334444555566666677776666666554
No 290
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.43 E-value=0.17 Score=28.88 Aligned_cols=27 Identities=7% Similarity=0.185 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
+++.+...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455566666666666666666666655
No 291
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.28 E-value=17 Score=40.88 Aligned_cols=145 Identities=6% Similarity=0.005 Sum_probs=92.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHH----HHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHH
Q 012360 54 TLMSIYNDFSDSGEVLILFKQL----IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMY 129 (465)
Q Consensus 54 ~l~~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (465)
.+..+-.+.+.+.+|+..++.- .+.. .....|..+...|+..++++...-+..... .+... ..-+-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl-~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSL-YQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccH-HHHHHHH
Confidence 4445666788888999888883 2221 122334444458888888888777665411 11222 2334456
Q ss_pred HhCCChHHHHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHHHHHHHHHhhcC---ChHHH-HHHHHHHHHcCChhHHHH
Q 012360 130 AKCKEMDEALRLFDEM-GSRRN-IVSLNILINGYIDMELVDLAREVFDEIVDK---DIVLW-RSMMHGCVKAKQPEEALE 203 (465)
Q Consensus 130 ~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~l~~~~~~~g~~~~a~~ 203 (465)
...|++..|...|+.+ +..|+ ...++-++......|.++...-..+..... ....+ +.=+.+--+.++++....
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 6789999999999998 55665 667888888888888888888777666332 22222 223344467777777766
Q ss_pred HHH
Q 012360 204 LFK 206 (465)
Q Consensus 204 ~~~ 206 (465)
...
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 654
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.26 E-value=0.56 Score=36.25 Aligned_cols=82 Identities=15% Similarity=0.030 Sum_probs=55.1
Q ss_pred hHHHHHHH---HHhcCCHHHHHHHHHhCCC-CCccch-HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 356 HFVCLVDL---LSRAGLLYQAEEFIKIMPA-EDKFIS-YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 356 ~~~~l~~~---~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
+.+.|++. -.+.++.+++..+++.+.. .|.... -..-...+...|++.+|+.+++.+.+..|..+..-..++.++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34444443 3467889999999887754 443222 222334466899999999999998888788776566666666
Q ss_pred hhcCChH
Q 012360 431 ALEGHWT 437 (465)
Q Consensus 431 ~~~g~~~ 437 (465)
...|+.+
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 6666644
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.25 E-value=0.53 Score=35.70 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=47.1
Q ss_pred HhcCCHHHHHHHHHhCCC-CC---ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChH
Q 012360 365 SRAGLLYQAEEFIKIMPA-ED---KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWT 437 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 437 (465)
...++++++..+++.+.. .| ...++.. ..+...|++++|+.++++..+..|..+..-..++.++.-.|+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 347788888888877643 23 3344443 34567888888888888888877776654555566666666544
No 294
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.83 E-value=0.37 Score=37.09 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=42.9
Q ss_pred HHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHH
Q 012360 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169 (465)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 169 (465)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~----~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN----NYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS----SS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc----ccCHHHHHHHHHhcchHHH
Confidence 445555556666666666666655544555566666666666666566666555321 1222334444455555555
Q ss_pred HHHHHHH
Q 012360 170 AREVFDE 176 (465)
Q Consensus 170 a~~~~~~ 176 (465)
+.-++.+
T Consensus 89 a~~Ly~~ 95 (143)
T PF00637_consen 89 AVYLYSK 95 (143)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 5444433
No 295
>PRK09687 putative lyase; Provisional
Probab=92.61 E-value=6.6 Score=34.31 Aligned_cols=62 Identities=6% Similarity=-0.149 Sum_probs=27.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 352 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
++..+-...+.++.+.|+. .|...+-.....++ .....+.++...|+. +|...+.++.+..|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 3444444455555555553 23332222222222 223444555555553 45555665555544
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.59 E-value=0.3 Score=26.28 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=25.3
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 421 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
..+..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 458899999999999999999999887653
No 297
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.56 E-value=5.3 Score=33.11 Aligned_cols=24 Identities=0% Similarity=0.112 Sum_probs=14.4
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCc
Q 012360 397 ITYSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
...+++.+|+.+|++.....-+++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 345667777777777666554433
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.55 E-value=2.7 Score=33.71 Aligned_cols=95 Identities=11% Similarity=0.055 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh------hh
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE--ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI------EH 356 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~ 356 (465)
.+..+...|.+.|+.+.|.+.|.++.+....|.. ..+..+++.....+++..+...+.++........+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4566677777778888888888877776544443 345666777777788888777777765321111111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
|..| .+...+++.+|.+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2345677777777766554
No 299
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.52 E-value=9.1 Score=35.75 Aligned_cols=163 Identities=12% Similarity=0.029 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHH
Q 012360 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMI 290 (465)
Q Consensus 214 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~ 290 (465)
..|.....+++..+....+..-+..+..+|..-| .+...+..++++|... ..+.-..+++++.+ .|+..-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3455666777777777777777777888777755 3455666777777766 34444455553332 2333333444
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 291 EGLANYGLGNEALRVFYQMERKGIKP--N---EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
..|-+ .+.+.+..+|.+....-++- + ...|..+... -..+.+..+.+..++....|...-...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44433 55566666666655432110 0 0122222221 134555566666666554444444444445555555
Q ss_pred hcCCHHHHHHHHHhCCC
Q 012360 366 RAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~ 382 (465)
...++++|++++..+.+
T Consensus 217 ~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 217 ENENWTEAIRILKHILE 233 (711)
T ss_pred cccCHHHHHHHHHHHhh
Confidence 66666666666665544
No 300
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.43 E-value=0.48 Score=41.16 Aligned_cols=92 Identities=17% Similarity=0.069 Sum_probs=48.0
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC--ccchHHHHHHHHHhcCChH
Q 012360 327 ACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED--KFISYKALLSACITYSEFD 403 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 403 (465)
-|.++|.+++|+..|..... +.| +..++..-..+|.+...+..|+.-......-. -...|..-+.+-...|...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 34555666666666655552 223 45555555555555555555555444433211 1223333334444456666
Q ss_pred HHHHHHHHHHHhCCCCch
Q 012360 404 LGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 404 ~a~~~~~~~~~~~p~~~~ 421 (465)
+|.+-++.++++.|.+..
T Consensus 183 EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHhHHHHHhhCcccHH
Confidence 666667777777776554
No 301
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.37 E-value=0.48 Score=41.16 Aligned_cols=88 Identities=11% Similarity=-0.006 Sum_probs=73.5
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHH
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 438 (465)
.+.|.++|.+++|++.|..... .| ++.++..-..+|.+...+..|+.-...++.++.....+|...+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 4568899999999999987543 56 888888888899999999999999999999887777788888888888888888
Q ss_pred HHHHHHHHHH
Q 012360 439 VAEARRNMKE 448 (465)
Q Consensus 439 a~~~~~~~~~ 448 (465)
|.+-.+...+
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 8776665543
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.29 E-value=0.35 Score=26.10 Aligned_cols=30 Identities=37% Similarity=0.416 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 421 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.+|..++.+|...|++++|...+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 368899999999999999999999887653
No 303
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.27 E-value=13 Score=36.93 Aligned_cols=319 Identities=9% Similarity=-0.050 Sum_probs=158.3
Q ss_pred ccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHH--HHHHHh-hcCChHHHHHHHH
Q 012360 116 EYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAR--EVFDEI-VDKDIVLWRSMMH 190 (465)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~--~~~~~~-~~~~~~~~~~l~~ 190 (465)
+.+.........+....|+.++|......+ .-......+..+++.+.+.|.+.... +-++.. ...+...-..+..
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~ 205 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAK 205 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444556677777888887777777766 22445667777777777666543322 111111 1122222222222
Q ss_pred HH-----------HH-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh--ccchhhHhHHHHHHHHHHcC-CCCCh--h
Q 012360 191 GC-----------VK-AKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC--SSLSNLQYGRLVHRFILQNN-ITQDA--F 253 (465)
Q Consensus 191 ~~-----------~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~-~~~~~--~ 253 (465)
.+ .. ..+...+...+. .+.|+...-..++-++ ....+.+.|...+....... ..+.. .
T Consensus 206 ~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~ 280 (644)
T PRK11619 206 QLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQE 280 (644)
T ss_pred hcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 11 00 011111111111 1122221111111111 13445577888887764432 22221 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012360 254 VKTALIDMYSKCGSLEEALVTFYKTDCK--DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331 (465)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 331 (465)
+...+.......+...++...++....+ +......-+......++++.+...+..|.... .-...-..-+.+++...
T Consensus 281 ~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~ 359 (644)
T PRK11619 281 LRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQ 359 (644)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHc
Confidence 2333433333333356677777765432 44444455555557888888888888875432 22344455677777778
Q ss_pred CCHHHHHHHHHHhhcCC-----------CCCCC------hhh--------HHHHHHHHHhcCCHHHHHHHHHhCCCCCcc
Q 012360 332 GLITEGCQLFRRMGGVY-----------RVQPT------IEH--------FVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~-----------~~~~~------~~~--------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (465)
|+.++|..+|+.+.... |.++. ... -..-+..+...|+...|...+..+....+.
T Consensus 360 g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~ 439 (644)
T PRK11619 360 GRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSK 439 (644)
T ss_pred CCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCH
Confidence 99999988888874321 11100 000 011233455667777777766655444444
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHhC---CCCchhHHHHHHHHhhcCChHHHH
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMKLG---NQSHEAYVLLSNFYALEGHWTEVA 440 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~ 440 (465)
.....+.....+.|.++.++.........+ -.-+..|...+..+.+.-..+.++
T Consensus 440 ~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 440 TEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHH
Confidence 445555555556777777776665443311 011223445555555544555444
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.24 E-value=1.9 Score=34.53 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch--hhHHHHHHHhcchhhhhhhhHHHHHHHHhCC---ccch----h
Q 012360 50 GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADK--ITLVILFSACARLEKLHYGKTVHCYATKVGL---EYML----N 120 (465)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~----~ 120 (465)
..+..+...|++.|+.+.|++.|.++.+....+.. ..+-.+|+.....+++..+...+.+....-- .++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46777888888888888888888888776544433 2456677777778888888777776654321 1221 1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHhh
Q 012360 121 MENALLLMYAKCKEMDEALRLFDEM 145 (465)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~ 145 (465)
+|..+ .+...+++..|-+.|-+.
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 22222 233467888888777666
No 305
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.12 E-value=2.5 Score=38.80 Aligned_cols=125 Identities=11% Similarity=0.034 Sum_probs=76.9
Q ss_pred HHHcCChHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHH
Q 012360 293 LANYGLGNEALRVF-YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY 371 (465)
Q Consensus 293 ~~~~~~~~~a~~~~-~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 371 (465)
-...|+.-.|.+-+ ..+....-.|+... .....+...|+++.+.+.+..... -+.....+..++++...+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHH
Confidence 34456666665444 43443322333333 233445667888888888877764 33455667777888888888888
Q ss_pred HHHHHHHhCCCCC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 372 QAEEFIKIMPAED--KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 372 ~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+|...-..|..+. ++.............|-++++...|++...++|+...
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 8888877775422 3333333333444567788888888888888754433
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.05 E-value=0.77 Score=39.49 Aligned_cols=102 Identities=15% Similarity=0.132 Sum_probs=63.6
Q ss_pred hccCCcchhhhHHHHHHHccCChHHHHHHhccCCC-CCc-----ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh
Q 012360 12 TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDV-----GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKI 85 (465)
Q Consensus 12 ~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 85 (465)
.|.+.++.+-..++..-....+++++...+=+++. |+. .+-.+.++. +-.-++++++.++..-+..|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 34555666666666666666677777766655542 211 111222222 23345667777777777777778888
Q ss_pred hHHHHHHHhcchhhhhhhhHHHHHHHHhC
Q 012360 86 TLVILFSACARLEKLHYGKTVHCYATKVG 114 (465)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (465)
+++.+++.+.+.+++..|.++...|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888877777777777776666543
No 307
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.99 E-value=0.59 Score=37.93 Aligned_cols=65 Identities=12% Similarity=-0.001 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh-CCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKI-MPAED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.+.-+..+.+.+...+|+...+. ++.+| +...-..++..++-.|++++|..-++-+-++.|+...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34445667778888888887654 55566 5666677888888889999888888888888776543
No 308
>PRK09687 putative lyase; Provisional
Probab=91.92 E-value=8.1 Score=33.77 Aligned_cols=231 Identities=10% Similarity=-0.046 Sum_probs=102.7
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhh----hhhhHHHHHHHHhCCccchh
Q 012360 45 PFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKL----HYGKTVHCYATKVGLEYMLN 120 (465)
Q Consensus 45 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~ 120 (465)
..+|.......+.++...|. ..+...+..+.. .+|...-...+.+++..|+. ..+...+..+... .++..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 44455555555555555553 233333333333 22333333444445555442 2344444444222 33444
Q ss_pred hHHHHHHHHHhCCC-----hHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 012360 121 MENALLLMYAKCKE-----MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195 (465)
Q Consensus 121 ~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (465)
+-...+.++...+. ...+...+...-..++..+-...+.++.+.++.+....+...+..++..+-...+.++...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 44444444444321 1223333333322344455555555555555533333333333445555555555555544
Q ss_pred C-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 012360 196 K-QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274 (465)
Q Consensus 196 g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 274 (465)
+ +...+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+. .....+.++...|+. +|...
T Consensus 187 ~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~ 256 (280)
T PRK09687 187 KYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPV 256 (280)
T ss_pred CCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHH
Confidence 2 23345555555553 33445555555666666653 33333333333321 233455666666664 45555
Q ss_pred HhcCC--CCChhhHHHHHH
Q 012360 275 FYKTD--CKDVVTWTTMIE 291 (465)
Q Consensus 275 ~~~~~--~~~~~~~~~l~~ 291 (465)
+..+. .+|...-...+.
T Consensus 257 L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 257 LDTLLYKFDDNEIITKAID 275 (280)
T ss_pred HHHHHhhCCChhHHHHHHH
Confidence 55433 234443333333
No 309
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.77 E-value=1.2 Score=38.30 Aligned_cols=59 Identities=10% Similarity=0.161 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHhh-CC-CCCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 012360 119 LNMENALLLMYAKCKEMDEALRLFDEM-GS-RRNIVSLNILINGYIDMELVDLAREVFDEI 177 (465)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (465)
..++..++..+...|+++.+.+.++++ .. +-+...|..++.+|.+.|+...|+..|+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 445677888888888888888888888 33 447778888999999999988888888877
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.65 E-value=3.3 Score=33.35 Aligned_cols=87 Identities=13% Similarity=-0.018 Sum_probs=46.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHH
Q 012360 292 GLANYGLGNEALRVFYQMERKGIKPNE-----ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLS 365 (465)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 365 (465)
-+...|++++|..-|...++. +++.. ..|..-..++.+.+.++.|+.-..+.++- .|+ ......-..+|.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHHH
Confidence 356666777777766666655 22221 12333334455666666666666666532 232 222223344566
Q ss_pred hcCCHHHHHHHHHhCCC
Q 012360 366 RAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~ 382 (465)
+...+++|++-|..+..
T Consensus 180 k~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILE 196 (271)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 66666666666666543
No 311
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.50 E-value=7.8 Score=34.12 Aligned_cols=144 Identities=15% Similarity=0.187 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhhcCCCCC--CChhhHHHHHHHHHhcCCH-
Q 012360 300 NEALRVFYQMERKGIKPNEATFVSVLAACRH--SG----LITEGCQLFRRMGGVYRVQ--PTIEHFVCLVDLLSRAGLL- 370 (465)
Q Consensus 300 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~- 370 (465)
++...+++.|.+.|++-+..+|.+....... .. ...+|..+|+.|++.+.+- ++..++..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4456777888888887777666543322222 22 3556788888888765442 333344444322 33333
Q ss_pred ---HHHHHHHHhCCC----CCcc-chHHHHHHHHHhcCC--hHHHHHHHHHHHHhC-CCCchhHHHHHHHHhhcCChHHH
Q 012360 371 ---YQAEEFIKIMPA----EDKF-ISYKALLSACITYSE--FDLGKKVANNMMKLG-NQSHEAYVLLSNFYALEGHWTEV 439 (465)
Q Consensus 371 ---~~A~~~~~~~~~----~~~~-~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a 439 (465)
+.++.+|+.+.. ++|. .....++..+-...+ ..++.++++.+.+.+ +.....|..++-...-.+..++.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 334455555433 2222 333333333222111 346777777777766 33333355555444444444244
Q ss_pred HHHHHH
Q 012360 440 AEARRN 445 (465)
Q Consensus 440 ~~~~~~ 445 (465)
..-+.+
T Consensus 237 ~~~i~e 242 (297)
T PF13170_consen 237 VEEIKE 242 (297)
T ss_pred HHHHHH
Confidence 443333
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.45 E-value=0.26 Score=37.95 Aligned_cols=129 Identities=14% Similarity=0.191 Sum_probs=74.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCC
Q 012360 54 TLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133 (465)
Q Consensus 54 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (465)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++. .+..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 34666667788888888888888766555677778888888888777777766651 11122245666667777
Q ss_pred ChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 012360 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ 197 (465)
Q Consensus 134 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 197 (465)
.+++|.-++.++|....... .+...++++.|.+.+.+. .+...|..++..+...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~al~------i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALE------ILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSS------TSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHHHHH------HHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 77777777666632111111 122233334443222222 246677777777766554
No 313
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.34 E-value=0.47 Score=24.56 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44455555555666666666655555544
No 314
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.91 E-value=0.37 Score=24.18 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=16.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHH
Q 012360 422 AYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 422 ~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
....++.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 35667777777777777777665
No 315
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.81 E-value=15 Score=35.89 Aligned_cols=149 Identities=12% Similarity=0.061 Sum_probs=75.5
Q ss_pred cCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhhcCCCCCCChhhHHHHHHH
Q 012360 296 YGLGNEALRVFYQMER-------KGIKPNEATFVSVLAACRHSG-----LITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (465)
..+.+.|+.+|+.+.+ .| +......+..+|.+.. +.+.|..++.+..+. + .|+.... +...
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~--lg~~ 334 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYL--LGVL 334 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHH--HHHH
Confidence 3455555555555544 33 2223444455554422 456677777766643 3 2333322 2222
Q ss_pred HHhc---CCHHHHHHHHHhCCCCCccchHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCh
Q 012360 364 LSRA---GLLYQAEEFIKIMPAEDKFISYKALLSACIT----YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436 (465)
Q Consensus 364 ~~~~---g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 436 (465)
+... .+...|.++|...-..+....+-.+..+|.. ..+...|..+++++.+.++............+.. +++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccc
Confidence 2222 2456777777766655555554444444432 2366777777777777773332222333333333 666
Q ss_pred HHHHHHHHHHHHhcCC
Q 012360 437 TEVAEARRNMKELQTR 452 (465)
Q Consensus 437 ~~a~~~~~~~~~~~~~ 452 (465)
+.+.-.+..+.+.|.+
T Consensus 414 ~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 414 DTALALYLYLAELGYE 429 (552)
T ss_pred cHHHHHHHHHHHhhhh
Confidence 6666666555554443
No 316
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.54 E-value=3.3 Score=34.50 Aligned_cols=57 Identities=9% Similarity=-0.002 Sum_probs=32.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
.+..++...|++-++++...+.+...|.+..+|..-+.+....=+..+|..-|.+..
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 334444555666666666666666666666666666666555555555555554443
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.53 E-value=19 Score=35.60 Aligned_cols=54 Identities=11% Similarity=-0.191 Sum_probs=29.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC---chhhHHHHHHHhcchhhhhhhhHHHHHHH
Q 012360 56 MSIYNDFSDSGEVLILFKQLIFEGIVA---DKITLVILFSACARLEKLHYGKTVHCYAT 111 (465)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (465)
++.+.+.+.+++|++.-+.... ..| -.......|..+...|+++.|-...-.|.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 4455666777777776655432 223 12234555666666666666655555444
No 318
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.17 E-value=5.8 Score=37.76 Aligned_cols=99 Identities=11% Similarity=0.093 Sum_probs=51.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHH
Q 012360 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 373 (465)
.+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+... |..|+-++...|+.+..
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHH
Confidence 3455666665554432 2445666666666666666666666665542 23444455555555544
Q ss_pred HHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHH
Q 012360 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411 (465)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (465)
..+-......+ ..|...-++...|++++..+++.+
T Consensus 712 ~~la~~~~~~g---~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQG---KNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhc---ccchHHHHHHHcCCHHHHHHHHHh
Confidence 44333332211 122233345566777766666544
No 319
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.96 E-value=0.16 Score=43.98 Aligned_cols=85 Identities=12% Similarity=-0.004 Sum_probs=36.7
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc-cchHHHHHHHHHhcCChHHHHH
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK-FISYKALLSACITYSEFDLGKK 407 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~ 407 (465)
..|.++.|++.|...+.. .++....|..-...+.+.++...|++=++.... ++| ..-|-.-..+....|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 345555555555555531 223333333334444455555555544443322 221 1112222222333455555555
Q ss_pred HHHHHHHhC
Q 012360 408 VANNMMKLG 416 (465)
Q Consensus 408 ~~~~~~~~~ 416 (465)
.+..+.+++
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 555555544
No 320
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.93 E-value=8.2 Score=30.42 Aligned_cols=133 Identities=12% Similarity=0.057 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCC--ChHHHHHHHHhhC
Q 012360 69 LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK--EMDEALRLFDEMG 146 (465)
Q Consensus 69 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 146 (465)
.+.++.+.+.+++|+...+..+++.+.+.|++.. +.+++..++-+|.......+-.+.... -..-|.+++.+++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4455556667777777777777777777776543 344444554455444333332222111 1333444444442
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 012360 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210 (465)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 210 (465)
..+..++..+...|++-+|.++.+....-+......++.+-.+.++...=..+++-..+
T Consensus 90 -----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 -----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred -----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13455666777777777777777665333333334445555555554444444443333
No 321
>PRK10941 hypothetical protein; Provisional
Probab=89.80 E-value=2.2 Score=36.81 Aligned_cols=61 Identities=10% Similarity=0.051 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.+.+-.+|.+.++++.|+++.+.++...|+++.-+.-.+..|.+.|.+..|..-++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4556677788888888888888888888888887888888888888888888877766544
No 322
>PRK12798 chemotaxis protein; Reviewed
Probab=89.79 E-value=16 Score=33.45 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=105.9
Q ss_pred cCCHHHHHHHHhcCCC----CChhhHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHH
Q 012360 265 CGSLEEALVTFYKTDC----KDVVTWTTMIEG-LANYGLGNEALRVFYQMERKGIKPNE----ATFVSVLAACRHSGLIT 335 (465)
Q Consensus 265 ~~~~~~a~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~ 335 (465)
.|+..++.+.+..+.. +....+-.|+.+ .....++..|+++|+...-. .|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5777777777776653 234455566554 34456788888888876544 4432 23444455567788888
Q ss_pred HHHHHHHHhhcCCCCCCChhhH-HHHHHHHHhcC---CHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHH
Q 012360 336 EGCQLFRRMGGVYRVQPTIEHF-VCLVDLLSRAG---LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411 (465)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (465)
++..+-.....++...|-..-| ..+..++.+.+ ..+.-..++..|........|..+.+.-...|+.+-|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8777766666554444543333 23333444433 3444555566665444556788888888888888888888888
Q ss_pred HHHhCCCCchhHHHHHHHH-----hhcCChHHHHHHHHHHHH
Q 012360 412 MMKLGNQSHEAYVLLSNFY-----ALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 412 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~ 448 (465)
+..+...+.. -...+..| .-..+.+++.+.+..+..
T Consensus 283 A~~L~~~~~~-~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKLADPDSA-DAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHhccCCCc-chHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 8886522211 22222222 233456666666555443
No 323
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.75 E-value=11 Score=31.60 Aligned_cols=85 Identities=6% Similarity=0.051 Sum_probs=39.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHH
Q 012360 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130 (465)
Q Consensus 51 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (465)
.|..-..+|...+++++|...+.+..+- ..-+...|.. ...++.|.-+.+++.+. +.-...++.....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455666667777777766665431 1222222211 12233333333333332 122233445555566
Q ss_pred hCCChHHHHHHHHhh
Q 012360 131 KCKEMDEALRLFDEM 145 (465)
Q Consensus 131 ~~g~~~~A~~~~~~~ 145 (465)
..|.++.|-..+++.
T Consensus 103 E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKA 117 (308)
T ss_pred HhCCcchHHHHHHHH
Confidence 666666555555554
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.67 E-value=0.72 Score=26.15 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=24.1
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 421 EAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 421 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.+++.|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4588999999999999999999998764
No 325
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.35 E-value=44 Score=37.99 Aligned_cols=315 Identities=10% Similarity=0.029 Sum_probs=166.3
Q ss_pred HHHHHHHhCCChHHHHHHHHhh-CCCC----CchhHHHHHHHHHhcCChHHHHHHHHH-hhcCChHHHHHHHHHHHHcCC
Q 012360 124 ALLLMYAKCKEMDEALRLFDEM-GSRR----NIVSLNILINGYIDMELVDLAREVFDE-IVDKDIVLWRSMMHGCVKAKQ 197 (465)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 197 (465)
.+..+-.+++.+.+|...++.- +.+. ...-|-.+...|..-++.|....+... ...++ .+ .-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s--l~-~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS--LY-QQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc--HH-HHHHHHHhhcc
Confidence 4455667788888999888883 1111 112233344477778887777766653 33332 22 23444567899
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHh
Q 012360 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF-VKTALIDMYSKCGSLEEALVTFY 276 (465)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 276 (465)
++.|..-|+.+.+.+ ++...+++-++..-...+.+.......+-..... .+... .++.=+.+-.+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998753 2235567777766666777776666554443332 22222 23333555577788877777665
Q ss_pred cCCCCChhhHHHH--HHHHHHcCChHH--HHHHHHHHHHCCCCC--------C-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012360 277 KTDCKDVVTWTTM--IEGLANYGLGNE--ALRVFYQMERKGIKP--------N-EATFVSVLAACRHSGLITEGCQLFRR 343 (465)
Q Consensus 277 ~~~~~~~~~~~~l--~~~~~~~~~~~~--a~~~~~~m~~~g~~p--------~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 343 (465)
..+...|... +....+..+-+. -.+..+.+.+.-+.| + ...|..++..+.-. +.+.-.+.+..
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~~ 1618 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELKK 1618 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhhc
Confidence 3444445443 233333222111 112333333221111 1 12333333332211 11111111111
Q ss_pred hhcCCCCCCChhhHHHH---HHHHHhcCCHHHHHH-HHHhCCCC-----CccchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 344 MGGVYRVQPTIEHFVCL---VDLLSRAGLLYQAEE-FIKIMPAE-----DKFISYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 344 ~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~-~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
.........+..-|..- ...+.+...+=-|.+ .+.....+ .-..+|....+.....|+++.|...+-++.+
T Consensus 1619 ~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e 1698 (2382)
T KOG0890|consen 1619 VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE 1698 (2382)
T ss_pred cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Confidence 11110111111112111 111222111111111 11111112 2345688888888889999999998888888
Q ss_pred hCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 415 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.. -+.++...+..+...|+-..|+.++++..+.
T Consensus 1699 ~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1699 SR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred cc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 77 3445888899999999999999999987654
No 326
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.29 E-value=15 Score=32.43 Aligned_cols=134 Identities=16% Similarity=0.257 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc--c----hhhHhHHHHHHHHHHcCCC---CChhHHHHHHHHHHhcCCH
Q 012360 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSS--L----SNLQYGRLVHRFILQNNIT---QDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 268 (465)
+++.+.+++.|.+.|+.-+..+|.+....... . .....+..+|+.|++...- ++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788889999998888777654433322 2 2355778888888876421 222222222211 11111
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHh
Q 012360 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA--TFVSVLAACRHSGL--ITEGCQLFRRM 344 (465)
Q Consensus 269 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~ 344 (465)
+. -.+.+..+|+.+.+.|+..+.. ....++..+..... ..++..+++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 11 1355667777777777666432 23333332222222 44677788888
Q ss_pred hcCCCCCCChhhHHHHH
Q 012360 345 GGVYRVQPTIEHFVCLV 361 (465)
Q Consensus 345 ~~~~~~~~~~~~~~~l~ 361 (465)
.+. ++++....|..+.
T Consensus 209 ~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHc-CCccccccccHHH
Confidence 766 7777666665544
No 327
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.11 E-value=2.4 Score=29.63 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=20.8
Q ss_pred HHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 012360 27 FYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE 78 (465)
Q Consensus 27 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 78 (465)
.+...|++++|..+.+.+..||...|-+|-. .+.|-.+++..-+.+|..+
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3344444444444444444444444443332 2333333333333344333
No 328
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.99 E-value=2.8 Score=29.10 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHH
Q 012360 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 361 (465)
++.+-++.+....+-|++....+.+++|.+.+++..|.++++-++.+.+ .+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 4555666666667788888888888888888888888888887774322 2344555554
No 329
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.98 E-value=3.3 Score=33.50 Aligned_cols=74 Identities=15% Similarity=0.047 Sum_probs=50.2
Q ss_pred HhcCCHHHHHHHHHhCCCCC---ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC-C---CCchhHHHHHHHHhhcCChH
Q 012360 365 SRAGLLYQAEEFIKIMPAED---KFISYKALLSACITYSEFDLGKKVANNMMKLG-N---QSHEAYVLLSNFYALEGHWT 437 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p---~~~~~~~~l~~~~~~~g~~~ 437 (465)
.+.|+ +.|.+.|-.+...| ++.....|.. |....|.++++.++.+++++. | .++.++..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33344 45666666665554 3333444444 444678899999999998865 2 35778899999999999988
Q ss_pred HHH
Q 012360 438 EVA 440 (465)
Q Consensus 438 ~a~ 440 (465)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.68 E-value=0.71 Score=24.47 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=24.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 422 AYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 422 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
++..++.++.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998765
No 331
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.68 E-value=0.64 Score=25.22 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=13.6
Q ss_pred ccchhhHHHHHHHHHhCCChHHHH
Q 012360 116 EYMLNMENALLLMYAKCKEMDEAL 139 (465)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~A~ 139 (465)
+-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555566666666666666554
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.61 E-value=1.1 Score=23.94 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=25.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 422 AYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 422 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+|..++..|...|++++|...+++..+..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 58899999999999999999999887653
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.50 E-value=6.3 Score=27.79 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHH
Q 012360 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (465)
+..+-+..+....+-|++......+++|.+.+++..|.++++-++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455566666667788888888888888888888888888888876433 33336665553
No 334
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.48 E-value=3.1 Score=28.95 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHH
Q 012360 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK 112 (465)
Q Consensus 66 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (465)
-++.+-++.+...++.|++....+.+++|-+.+++..|.++++-...
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555666666667777777777777888777888878777776653
No 335
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.32 E-value=4.4 Score=35.12 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012360 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346 (465)
Q Consensus 298 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (465)
++++++.++..=+.-|+-||.+++..+++.+.+.+++.+|.++.-.|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4456666666656666666666666666666666666666666555543
No 336
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.07 E-value=2.3 Score=29.91 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=17.9
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHH
Q 012360 70 ILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111 (465)
Q Consensus 70 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (465)
+-++.+...++.|++....+.+++|.+.+++..|.++++-+.
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333344444555555555555555555555555554443
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.97 E-value=4.1 Score=32.25 Aligned_cols=42 Identities=7% Similarity=0.085 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 402 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+++|...|+++.+.+|.+.. |..-+... ++|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~~~P~ne~-Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNEL-YRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH-HHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCCCcHH-HHHHHHHH------HhhHHHHHHHHHHH
Confidence 67788888888888898877 55555444 34566666655443
No 338
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.35 E-value=13 Score=29.39 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=74.0
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhhHHHHH-----HHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH--HHHHhcCC
Q 012360 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMI-----EGLANYGLGNEALRVFYQMERKGIKPNEA-TFVSVL--AACRHSGL 333 (465)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~--~~~~~~~~ 333 (465)
+...+..++|+.-|..+.+.+...|-.|. ....+.|+...|...|+++-.....|... -...|- -.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 34567777888888777766555554443 33556778888888888776654344332 222222 22346777
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 334 ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
++......+-+... +.+.....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77777777766643 3333344445666677778888888888877654
No 339
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.29 E-value=1.3 Score=27.03 Aligned_cols=31 Identities=6% Similarity=0.284 Sum_probs=25.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.+.-++.+.|++++|.+..+.+++..|++..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4566788999999999999999999999876
No 340
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.27 E-value=8.2 Score=27.12 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=56.4
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 311 (465)
..++|..|-+.+...+-. ...+-..-+..+...|+|++|..+.+...-||...|.+|... +.|-.+.+...+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 356666666666654421 222222334567778999999999988888888888777553 55667777777777777
Q ss_pred CCCCCCHHHH
Q 012360 312 KGIKPNEATF 321 (465)
Q Consensus 312 ~g~~p~~~~~ 321 (465)
+| .|....|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 76 4544444
No 341
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.20 E-value=2.6 Score=34.95 Aligned_cols=84 Identities=12% Similarity=0.038 Sum_probs=39.7
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcc-chHHHHHHHHHhcCChHH
Q 012360 328 CRHSGLITEGCQLFRRMGGVYRVQPTI-EHFVCLVDLLSRAGLLYQAEEFIKIMP-AEDKF-ISYKALLSACITYSEFDL 404 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~ 404 (465)
|.....++.|+..|.+... +.|+. ..|..=+.++.+..+++.+..-..+.. -.|+. .....+..++.....+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 4444556666665555552 34444 233344444555555555554333322 13322 222333444445555666
Q ss_pred HHHHHHHHHH
Q 012360 405 GKKVANNMMK 414 (465)
Q Consensus 405 a~~~~~~~~~ 414 (465)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.16 E-value=31 Score=33.72 Aligned_cols=270 Identities=11% Similarity=-0.007 Sum_probs=154.7
Q ss_pred hHHHHHHHHHhhcC-ChHHHHHHHHH-----HHHcCChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHhccc---
Q 012360 167 VDLAREVFDEIVDK-DIVLWRSMMHG-----CVKAKQPEEALELFKKMID-------EGVTPDEEVMVSVLSACSSL--- 230 (465)
Q Consensus 167 ~~~a~~~~~~~~~~-~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~--- 230 (465)
...|.++++..... +...-..+... +....+.+.|+.+|+.+.+ .|.++ ....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP---AQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc---cccHHHHHHhcCCCC
Confidence 46778888777544 33333333322 3456689999999998876 55322 344455555443
Q ss_pred -h-hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHhcCCCC-ChhhHHHHHHHHHH----cCChH
Q 012360 231 -S-NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC---GSLEEALVTFYKTDCK-DVVTWTTMIEGLAN----YGLGN 300 (465)
Q Consensus 231 -~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~ 300 (465)
. +...|..++....+.|. |+.... +..++... .+...|.++|...... .+..+-.+..+|.. ..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 2 66779999998888874 333332 33333332 4677899988876543 33333333333322 34788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH-HHH---HHh----cCCHHH
Q 012360 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL-VDL---LSR----AGLLYQ 372 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~---~~~----~g~~~~ 372 (465)
.|..++.+.-+.| .|....-...+..+.. +.++.+.-.+..+.+. +..- ..+-... ... ... ..+...
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEV-AQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhH-HhhHHHHHHHhccccccccccccchhH
Confidence 8999999988887 4432222233333444 6666665555555432 2211 1111111 111 111 124556
Q ss_pred HHHHHHhCCCCCccchHHHHHHHHHhc----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC---ChHHHHHHHHH
Q 012360 373 AEEFIKIMPAEDKFISYKALLSACITY----SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG---HWTEVAEARRN 445 (465)
Q Consensus 373 A~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~ 445 (465)
+...+.......+......+...|... .+++.|...|..+...+ ......++..+...- .+..|.+++++
T Consensus 458 ~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~ 534 (552)
T KOG1550|consen 458 AFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQ 534 (552)
T ss_pred HHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHH
Confidence 666677666666666666666665432 46888888888888777 445667777765431 15677777776
Q ss_pred HHHh
Q 012360 446 MKEL 449 (465)
Q Consensus 446 ~~~~ 449 (465)
..+.
T Consensus 535 ~~~~ 538 (552)
T KOG1550|consen 535 ASEE 538 (552)
T ss_pred HHhc
Confidence 6553
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.12 E-value=5.1 Score=36.92 Aligned_cols=133 Identities=14% Similarity=0.048 Sum_probs=80.4
Q ss_pred HHHHHhcCCHHHHHHHH-hcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 012360 259 IDMYSKCGSLEEALVTF-YKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335 (465)
Q Consensus 259 ~~~~~~~~~~~~a~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 335 (465)
|.-....|++-.|-+-+ ..+. +.++.........+...|.++.+...+...... +.....+...+++...+.|+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 33344567776664433 3222 123333333334456779999999888766543 3445678888999999999999
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHH
Q 012360 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLS 394 (465)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 394 (465)
.|...-.-|... .+ -+......-.-.--..|-++++...++++.. .|...-|...+.
T Consensus 375 ~a~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~ 433 (831)
T PRK15180 375 EALSTAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLS 433 (831)
T ss_pred HHHHHHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeec
Confidence 999998888853 22 2333333333334456778889888887643 333334444443
No 344
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.12 E-value=8.9 Score=32.83 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=28.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCCHHHH
Q 012360 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFV-------SVLAACRHSGLITEG 337 (465)
Q Consensus 289 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-------~l~~~~~~~~~~~~a 337 (465)
+..-..+.+++++|+..+.++...|+..+..+.+ .+...|...|++..-
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 3444556677777777777777777766665432 333445555544433
No 345
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.83 E-value=24 Score=32.01 Aligned_cols=188 Identities=9% Similarity=-0.018 Sum_probs=86.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCC----CCChhHHHHHHHHHH
Q 012360 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI----TQDAFVKTALIDMYS 263 (465)
Q Consensus 188 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~ 263 (465)
.+.+.-+.|+|+...+........ .++...+..+... +.++++++..+++.....-. ......|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356778899999955555544432 3355555555544 78888888888777655311 111223333333333
Q ss_pred hcCCH---HHHHHHHhcCCCCChhhHHHHHHHHHH-----cCChHHHHHHH---HHHHHC--CCCCCHHHHHHHHHHHHh
Q 012360 264 KCGSL---EEALVTFYKTDCKDVVTWTTMIEGLAN-----YGLGNEALRVF---YQMERK--GIKPNEATFVSVLAACRH 330 (465)
Q Consensus 264 ~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~---~~m~~~--g~~p~~~~~~~l~~~~~~ 330 (465)
+...+ +++.++....... ......++..... .++++.-..++ ..+... .......++..++..+.+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk 158 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARK 158 (352)
T ss_pred HHhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 33333 3333333222111 2222222222111 11221111111 111110 011223455666666666
Q ss_pred cCCHHHHHHHHHHhhcCCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 331 SGLITEGCQLFRRMGGVYRVQ---PTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
.|.++.|...+.++... +.. ..+.....-+..+...|+..+|...++...
T Consensus 159 ~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 159 AGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred CCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67776666666666532 100 123333444555666666666666665543
No 346
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.73 E-value=5.7 Score=30.34 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCchhhHHHHHHHhcchhh-hhhhhHHHHHHHHhCCccchhhHHHH
Q 012360 52 WNTLMSIYNDFSDSGEVLILFKQLIFEG-----IVADKITLVILFSACARLEK-LHYGKTVHCYATKVGLEYMLNMENAL 125 (465)
Q Consensus 52 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (465)
.|+++.-....+++...+.+++.+.... -..+...|..++.+.++... --.+..+|..+.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4566666666666666666666653211 02355567777777766655 34466667777776677777777777
Q ss_pred HHHHHhC
Q 012360 126 LLMYAKC 132 (465)
Q Consensus 126 ~~~~~~~ 132 (465)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776654
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.71 E-value=20 Score=31.00 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+......|..+|.+.+|.++.+++++.+|-+...+..|...+...|+--.+.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 45556788899999999999999999999999999999999999999777777776663
No 348
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.59 E-value=2 Score=22.50 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 400 SEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 400 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
|+.+.|..+|++++...|.++..|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999889888888777654
No 349
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.28 E-value=3.4 Score=28.71 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=38.0
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHhhcCChHH-HHHHHHHH
Q 012360 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQ--SHEAYVLLSNFYALEGHWTE-VAEARRNM 446 (465)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~-a~~~~~~~ 446 (465)
|...-..+...+...|++++|++.+-++++.+|. +...-..++..+...|.-+. +.++-++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 5566667777777888888888888888776643 35566777777777776543 33443333
No 350
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.12 E-value=18 Score=29.83 Aligned_cols=176 Identities=13% Similarity=0.011 Sum_probs=94.4
Q ss_pred chhhHhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh-hHHHH--HHHHHHcCChHHHHHH
Q 012360 230 LSNLQYGRLVHRFILQNNITQD-AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV-TWTTM--IEGLANYGLGNEALRV 305 (465)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~~a~~~ 305 (465)
.|-++.|.--|.+.... .|+ +.+||.+.-.+...|+++.|.+.|+...+-|+. -|..+ .-++.--|++.-|.+=
T Consensus 78 lGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHH
Confidence 34444444444444443 343 567888888888889999999999887654432 22222 2233445788888776
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHH-HHHHhhcCCCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHhCC
Q 012360 306 FYQMERKGIKPNE--ATFVSVLAACRHSGLITEGCQ-LFRRMGGVYRVQPTIEHFV-CLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 306 ~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
+...-... +.|+ ..|..+. ...-++.+|.. +.++.. + .+..-|. .++..|...=..+.+.+-...-.
T Consensus 156 ~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---K--SDKEQWGWNIVEFYLGKISEETLMERLKADA 226 (297)
T ss_pred HHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhc
Confidence 66665542 1122 2222222 12335555554 334443 2 2333333 23333332222222222222111
Q ss_pred CCC------ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 382 AED------KFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 382 ~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.+. -..+|--+.+-+...|+.++|..+|+-++..+
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 111 23467778888889999999999999888755
No 351
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.66 E-value=40 Score=33.50 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=11.9
Q ss_pred HHhcCCHHHHHHHHHhCCCCC
Q 012360 364 LSRAGLLYQAEEFIKIMPAED 384 (465)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~~ 384 (465)
+...|+++.|.+.++++.--|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 345677777777777765434
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.55 E-value=8.6 Score=31.21 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCCHHHH
Q 012360 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN---NITQDAFVKTALIDMYSKCGSLEEA 271 (465)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 271 (465)
-+.|.+.|-.+...+.--+......+ ..|....+.+++..++....+. +-.+++..+.+|+..+.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34566666666655443333333333 3333455666666666666543 2245566666666666666666655
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.54 E-value=2.3 Score=28.27 Aligned_cols=47 Identities=9% Similarity=-0.047 Sum_probs=34.9
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchh---HHHHHHHHhhcCChHHHHHHHH
Q 012360 398 TYSEFDLGKKVANNMMKLGNQSHEA---YVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
...+.++|+..|+++++..++.+.- +-.|+.+|...|++.+++++--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677889999999998877665553 4456677888888888777543
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.24 E-value=1.8 Score=25.13 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=18.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 424 VLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 424 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
..|+.+|...|+.+.|++++++....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 35677777777777777777776643
No 355
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.12 E-value=28 Score=34.47 Aligned_cols=187 Identities=14% Similarity=0.175 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----------HHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCCh
Q 012360 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE----------EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252 (465)
Q Consensus 183 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 252 (465)
.+...++..|....+++...++.+.+... ||. ..|...++--.+.||-++|..+.-.+++..-+..+
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 45555666677777777777777777652 221 12333333334556677777666666554322222
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHH
Q 012360 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT---FVSVLAACR 329 (465)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~l~~~~~ 329 (465)
.. ||-+|++ |+.|- +-+.|...+..+.|.++|++.-+. .|+..+ +..|+.+-.
T Consensus 279 Dm-------~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 DM-------YCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ce-------eeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhh
Confidence 22 2222221 11110 112233445567788888877654 665542 333333322
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHH
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 409 (465)
+ .++...++-. + | -.|-..+.+.|..++..++++-.- ...+-.-++++.+|++.-
T Consensus 335 ~--~Fens~Elq~-I----g--------mkLn~LlgrKG~leklq~YWdV~~----------y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 335 E--HFENSLELQQ-I----G--------MKLNSLLGRKGALEKLQEYWDVAT----------YFEASVLANDYQKAIQAA 389 (1226)
T ss_pred h--hccchHHHHH-H----H--------HHHHHHhhccchHHHHHHHHhHHH----------hhhhhhhccCHHHHHHHH
Confidence 2 1221111110 0 1 123344567777777776665432 233344578889999999
Q ss_pred HHHHHhCCCCch
Q 012360 410 NNMMKLGNQSHE 421 (465)
Q Consensus 410 ~~~~~~~p~~~~ 421 (465)
+.|.++.|+..-
T Consensus 390 e~mfKLk~P~WY 401 (1226)
T KOG4279|consen 390 EMMFKLKPPVWY 401 (1226)
T ss_pred HHHhccCCceeh
Confidence 999998877654
No 356
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.94 E-value=3.5 Score=38.97 Aligned_cols=95 Identities=19% Similarity=0.167 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHHhhcCCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQP--TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 406 (465)
.|+...|...+..+... .| .-...-.|.+.+.+.|...+|..++..... ...+.++..+++++....+.+.|+
T Consensus 620 ~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 57777777777776632 33 222334566666677777777776655432 234556777777787788888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHH
Q 012360 407 KVANNMMKLGNQSHEAYVLLSN 428 (465)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~l~~ 428 (465)
+.|+++.++.|+++.+-+.|..
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHH
Confidence 8888888888877775555443
No 357
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.86 E-value=34 Score=32.02 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=71.1
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CC---------ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-------CCCCCCH-
Q 012360 259 IDMYSKCGSLEEALVTFYKTD---CK---------DVVTWTTMIEGLANYGLGNEALRVFYQMER-------KGIKPNE- 318 (465)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~---~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-------~g~~p~~- 318 (465)
.+.+.-.|++.+|.+++.... .+ .-..||.|...+.+.+.+..+..+|.+..+ .|++|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 345566799999999885432 11 123457777777777777777777776653 4655532
Q ss_pred ----------HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 319 ----------ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 319 ----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
.+|+ ..-.+...|++-.|.+.|.+... -+..++..|..|.++|.
T Consensus 327 ~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 327 FTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred eehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
Confidence 1232 23456788999999999999986 44667788999988886
No 358
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.49 E-value=25 Score=30.03 Aligned_cols=114 Identities=11% Similarity=0.071 Sum_probs=60.8
Q ss_pred CChHHHHHHHHhh-CCCCC-----chhHHHHHHHHHhcCChHHHHHHHHHhhc-------C--ChHHHHHHHHHHHHcCC
Q 012360 133 KEMDEALRLFDEM-GSRRN-----IVSLNILINGYIDMELVDLAREVFDEIVD-------K--DIVLWRSMMHGCVKAKQ 197 (465)
Q Consensus 133 g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~g~ 197 (465)
.++++|+.-|++. ...+. -.+.-.++....+.|++++..+.+.++.. + +..+.|.++..-..+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 3555666666555 22221 12334456666666666666666665522 1 34456666666555555
Q ss_pred hhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc
Q 012360 198 PEEALELFKKMIDE-----GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 198 ~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (465)
.+.-..+|+.-++. +-+.=..|-..+-..|...+.+.+..++++++..+
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 55555555443221 00111112244556677778888888888777654
No 359
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.27 E-value=38 Score=32.00 Aligned_cols=175 Identities=13% Similarity=0.116 Sum_probs=117.0
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHH
Q 012360 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260 (465)
Q Consensus 181 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 260 (465)
|....-+++..+..+-.+.-+..+-.+|+.-| .+...|..++.+|... ..++-..+++++.+..+. +...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 55566778888888888888888999998854 4667888888888877 667788889988887543 3444455555
Q ss_pred HHHhcCCHHHHHHHHhcCCCC------Ch---hhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 012360 261 MYSKCGSLEEALVTFYKTDCK------DV---VTWTTMIEGLANYGLGNEALRVFYQMERK-GIKPNEATFVSVLAACRH 330 (465)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~ 330 (465)
.|-+ ++.+.+..+|.++... +. ..|..+...- ..+.+....+..++... |..--...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 8888888888765421 11 1455554321 34566666666666543 333344556666677888
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (465)
..++++|++++..+.+. -..|...-..++.-+
T Consensus 218 ~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEH--DEKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhh--cchhhhHHHHHHHHH
Confidence 89999999999988853 344555555555443
No 360
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.21 E-value=51 Score=33.47 Aligned_cols=215 Identities=15% Similarity=0.018 Sum_probs=103.7
Q ss_pred ccchhhHhHHHHHHHHHHcCCCCChh-------HHHHHH-HHHHhcCCHHHHHHHHhcCC--------CCChhhHHHHHH
Q 012360 228 SSLSNLQYGRLVHRFILQNNITQDAF-------VKTALI-DMYSKCGSLEEALVTFYKTD--------CKDVVTWTTMIE 291 (465)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~ 291 (465)
....++++|..++.++...-..|+.. .++.+- ......|++++|.++.+... .+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34566667766666655432121111 222221 12234577777776665432 134556677777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHH--HHHHhcCC--HHHHHHHHHHhhcCCCCC-----CChhhHHH
Q 012360 292 GLANYGLGNEALRVFYQMERKGIKPNEAT---FVSVL--AACRHSGL--ITEGCQLFRRMGGVYRVQ-----PTIEHFVC 359 (465)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~l~--~~~~~~~~--~~~a~~~~~~~~~~~~~~-----~~~~~~~~ 359 (465)
+..-.|++++|..+.....+.--.-+... +..+. ..+...|. +.+....|......+... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77778888888877766554311222222 22222 33455663 333333333333221111 11233334
Q ss_pred HHHHHHhcCCHHHHHHH----HHhCCC-CCc--cc--hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-chh-HH----
Q 012360 360 LVDLLSRAGLLYQAEEF----IKIMPA-EDK--FI--SYKALLSACITYSEFDLGKKVANNMMKLGNQS-HEA-YV---- 424 (465)
Q Consensus 360 l~~~~~~~g~~~~A~~~----~~~~~~-~~~--~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~-~~---- 424 (465)
+..++.+ .+.+..- +.--.. .|. .. .+..|+......|+.++|...++++..+.-.+ +.+ |.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 3332222 211111 111 11 12356677778899999999888888754221 221 21
Q ss_pred -HHHHHHhhcCChHHHHHHHHH
Q 012360 425 -LLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 425 -~l~~~~~~~g~~~~a~~~~~~ 445 (465)
.-...-..+|+.+++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 112223356788777776654
No 361
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.89 E-value=17 Score=27.85 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=8.3
Q ss_pred HhcCCHHHHHHHHHHhh
Q 012360 329 RHSGLITEGCQLFRRMG 345 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~ 345 (465)
...|++++|.++|+.+.
T Consensus 55 i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 55 IARGNYDEAARILRELL 71 (153)
T ss_pred HHcCCHHHHHHHHHhhh
Confidence 34445555555555444
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.29 E-value=3.1 Score=24.17 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=17.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcC
Q 012360 188 MMHGCVKAKQPEEALELFKKMIDEG 212 (465)
Q Consensus 188 l~~~~~~~g~~~~a~~~~~~~~~~~ 212 (465)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777776543
No 363
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=82.92 E-value=15 Score=26.28 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=44.3
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 311 (465)
..++|..|.+.+...+. ....+--.-+..+...|+|++|+..=.....||...|.+|.. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45677777777776653 222233334455667778887755445555667777665543 356667777777776665
Q ss_pred CC
Q 012360 312 KG 313 (465)
Q Consensus 312 ~g 313 (465)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 364
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.44 E-value=16 Score=27.51 Aligned_cols=71 Identities=7% Similarity=0.009 Sum_probs=42.7
Q ss_pred CCChhhHHHHHHHHHhcCCHH---HHHHHHHhCCC--CC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 351 QPTIEHFVCLVDLLSRAGLLY---QAEEFIKIMPA--ED--KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 351 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.++..+-..+..++.+..+.+ +-+.+++++.. .| ......-|.-++.+.++++.+.++.+..++..|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 355555556666666655433 34445555542 22 2233444555677788888888888888888777765
No 365
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.46 E-value=8.2 Score=31.69 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=7.7
Q ss_pred HHHHHHHhCCChHHHHHHH
Q 012360 124 ALLLMYAKCKEMDEALRLF 142 (465)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~ 142 (465)
.++..++-.|++++|..-+
T Consensus 40 flfqLlcvaGdw~kAl~Ql 58 (273)
T COG4455 40 FLFQLLCVAGDWEKALAQL 58 (273)
T ss_pred HHHHHHhhcchHHHHHHHH
Confidence 3344444444444443333
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.15 E-value=6.5 Score=26.23 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=24.5
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 012360 295 NYGLGNEALRVFYQMERKGIKPNE--ATFVSVLAACRHSGLITEGCQL 340 (465)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~ 340 (465)
..++.++|+..|....+.-..|.. .++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665554222221 3555566666666666655543
No 367
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.70 E-value=3.8 Score=32.43 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCC----hHHHHHHHHHH
Q 012360 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH----WTEVAEARRNM 446 (465)
Q Consensus 402 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~~ 446 (465)
+++|+.-|++++.++|+...++..++.+|...+. ..+|..+|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 5677888888888999999999999999987653 33455555544
No 368
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=79.54 E-value=19 Score=26.91 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhC--CCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 404 LGKKVANNMMKLG--NQSHEAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 404 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
++.++|+.|...+ -..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 8888888888855 66667788888999999999999998874
No 369
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.35 E-value=57 Score=30.77 Aligned_cols=96 Identities=5% Similarity=-0.050 Sum_probs=67.9
Q ss_pred CChhhH-HHHHHHHHhcCCHHHHHHHHHhCCCC--CccchHHHHHHHHH--hcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 012360 352 PTIEHF-VCLVDLLSRAGLLYQAEEFIKIMPAE--DKFISYKALLSACI--TYSEFDLGKKVANNMMKLGNQSHEAYVLL 426 (465)
Q Consensus 352 ~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 426 (465)
|+..++ +.+++-+.+.|-..+|..++..+..- ++...|..++..-. ..-+...+..+|+.|..-...++..|...
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 443333 56777888889999999999887663 35666777776432 22347888889998887544777778888
Q ss_pred HHHHhhcCChHHHHHHHHHHH
Q 012360 427 SNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 427 ~~~~~~~g~~~~a~~~~~~~~ 447 (465)
...-...|..+.+-.++.+..
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHhhccCCCcccccHHHHHHH
Confidence 777778888888776665443
No 370
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.13 E-value=42 Score=29.15 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCchhhHHHHHHHhcc-hh-hhhhhhHHHHHHHH-hCCccchhhHHHHHH
Q 012360 52 WNTLMSIYNDFSDSGEVLILFKQLIF-EGIVADKITLVILFSACAR-LE-KLHYGKTVHCYATK-VGLEYMLNMENALLL 127 (465)
Q Consensus 52 ~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 127 (465)
|..|+. ++.-..+|+.+|+.... ..+--|+.....+++.... .+ ....--++.+.+.. .+-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 655553 34456677777774322 2355577777777776654 22 22222333333332 234677778888999
Q ss_pred HHHhCCChHHHHHHHHhh----CCCCCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 012360 128 MYAKCKEMDEALRLFDEM----GSRRNIVSLNILINGYIDMELVDLAREVFDEI 177 (465)
Q Consensus 128 ~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (465)
.++..+++.+-.++++.. +...|...|..+|+.....|+..-..++.++-
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 999999999999999887 23347788999999999999998888887764
No 371
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.05 E-value=29 Score=29.92 Aligned_cols=85 Identities=14% Similarity=0.095 Sum_probs=47.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh--
Q 012360 189 MHGCVKAKQPEEALELFKKMIDE--GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK-- 264 (465)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 264 (465)
|.+++..++|.+++...-+.-+. .++|. ....-|-.|.+.+.+..+.++-.......-.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56677777777776655444321 23333 3333344466777777776666665554323333345555555543
Q ss_pred ---cCCHHHHHHHH
Q 012360 265 ---CGSLEEALVTF 275 (465)
Q Consensus 265 ---~~~~~~a~~~~ 275 (465)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 56777776665
No 372
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.85 E-value=40 Score=31.10 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=31.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHhhc
Q 012360 292 GLANYGLGNEALRVFYQMERKGIKPNEA--TFVSVLAACR--HSGLITEGCQLFRRMGG 346 (465)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 346 (465)
.+.+.+++..|.+++..+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344667777777777777765 444433 3334444443 35567777777776654
No 373
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.80 E-value=47 Score=28.90 Aligned_cols=59 Identities=12% Similarity=-0.020 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
+++.....|..+|.+.+|..+.+.... +| +...|..++..+...||--.+.+.++++-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344556778899999999999998765 44 777888999999999998888888887754
No 374
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.50 E-value=21 Score=34.27 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=69.6
Q ss_pred hhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchh
Q 012360 19 YVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE 98 (465)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 98 (465)
..-+.+.+.+.+.|-.++|+++--. |+ .-.....+.|+++.|.++..+. -+..-|..|.++....+
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~D---~d-----~rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELSTD---PD-----QRFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAG 680 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCCC---hh-----hhhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcc
Confidence 3567778888888888888765321 11 1122334556666666655442 23344666666666666
Q ss_pred hhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 012360 99 KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177 (465)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (465)
++..|.+.|...... ..|+-.+...|+.+....+-... ......|.-.-++...|+++++.+++.+-
T Consensus 681 ~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~---~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 681 ELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLA---KKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHH---HhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 666666666655432 34444455555544333332222 00111222333455566666666666444
No 375
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.91 E-value=33 Score=28.81 Aligned_cols=113 Identities=13% Similarity=-0.040 Sum_probs=70.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcCCH
Q 012360 293 LANYGLGNEALRVFYQMERKGIKPNEA-TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAGLL 370 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 370 (465)
|....+++.|+..|.+.+.. .|+.. -|+.-+.++.+..+++.+..--.+..+ +.|+ +....-+...+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhccc
Confidence 45556788888877777665 77764 445566777788888888877777763 3454 34444566667777788
Q ss_pred HHHHHHHHhCCC-------CCccchHHHHHHHHHhcCChHHHHHHHH
Q 012360 371 YQAEEFIKIMPA-------EDKFISYKALLSACITYSEFDLGKKVAN 410 (465)
Q Consensus 371 ~~A~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 410 (465)
++|+..+.+... .+....+..|..+--..=...+..++.+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 888887776521 2344456666555333333334444443
No 376
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=76.65 E-value=2.4 Score=38.99 Aligned_cols=95 Identities=9% Similarity=0.021 Sum_probs=67.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcC
Q 012360 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF-VCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYS 400 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~ 400 (465)
-+..+.+.+.++.|..++.++.+ ..|+-..| ..=..++.+.+++..|..=+..+.+ .| ....|..=..++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 35566777889999999999984 45654433 3333678888888888875555443 33 3344555556677788
Q ss_pred ChHHHHHHHHHHHHhCCCCch
Q 012360 401 EFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 401 ~~~~a~~~~~~~~~~~p~~~~ 421 (465)
++.+|...|+......|+++.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHH
Confidence 889999999999889899887
No 377
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.37 E-value=48 Score=28.36 Aligned_cols=58 Identities=10% Similarity=0.038 Sum_probs=27.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCC----C-------HHHHHHHHHHhccchhhHhHHHHHHHHH
Q 012360 187 SMMHGCVKAKQPEEALELFKKMIDEGVTP----D-------EEVMVSVLSACSSLSNLQYGRLVHRFIL 244 (465)
Q Consensus 187 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 244 (465)
.+...|...|.+.+..++++++....-.. | ...|..=+..|....+-.+...+|++..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 34445555555555555555554321110 0 2334444555555555555555555543
No 378
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=75.45 E-value=12 Score=26.12 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=33.6
Q ss_pred HhcCChHHHHHHHHHHHHhCCC----C-----chhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 397 ITYSEFDLGKKVANNMMKLGNQ----S-----HEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.+.|++..|.+.+.+..+.... . ......++......|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677788887766666653311 1 12344566777788888888888887654
No 379
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.43 E-value=24 Score=29.41 Aligned_cols=64 Identities=6% Similarity=-0.057 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCh-------HHHHHHHHHHHHhC--CC----CchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC
Q 012360 389 YKALLSACITYSEF-------DLGKKVANNMMKLG--NQ----SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 389 ~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
+..+.+.|...|+. ..|.+.|.++.+.. |. ...+...++....+.|++++|.+.|.++...+-.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 34444555555543 33444555554433 22 2345667777788888888888888877655433
No 380
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.56 E-value=21 Score=26.42 Aligned_cols=58 Identities=10% Similarity=0.193 Sum_probs=41.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHH
Q 012360 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361 (465)
Q Consensus 302 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 361 (465)
..+-+..+..-.+-|++......+++|.+.+++..|.++|+-++.+ ..+....|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 3344555566677888888888888888889999999988888753 334344455544
No 381
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=74.10 E-value=81 Score=29.84 Aligned_cols=392 Identities=11% Similarity=0.119 Sum_probs=199.8
Q ss_pred cCCcchhhhHHHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCchh-hHH
Q 012360 14 LDSDIYVGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIY-NDFSDSGEVLILFKQLIFEGIVADKI-TLV 88 (465)
Q Consensus 14 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~ 88 (465)
++.|+..|...+..+.+.+.+.+...+|..|. +.++..|-.-..-. -.+-+++.|..+|.+-.+.+ |+.. .|.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n--pdsp~Lw~ 178 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN--PDSPKLWK 178 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC--CCChHHHH
Confidence 45689999999998888888999999999886 33555664444333 33445899999998877753 4443 222
Q ss_pred HHHHH---hc-ch-------h-hhhhh-hHHHHHHHH-hCCccchhhH--H-HHH--HHHHhCCChHH-HHHHHHhh--C
Q 012360 89 ILFSA---CA-RL-------E-KLHYG-KTVHCYATK-VGLEYMLNME--N-ALL--LMYAKCKEMDE-ALRLFDEM--G 146 (465)
Q Consensus 89 ~l~~~---~~-~~-------~-~~~~a-~~~~~~~~~-~~~~~~~~~~--~-~l~--~~~~~~g~~~~-A~~~~~~~--~ 146 (465)
..++. ++ +. | +.+.- .++-..-.. ....++...- + ..+ ...-......+ -..+.+.+ +
T Consensus 179 eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~ 258 (568)
T KOG2396|consen 179 EYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSK 258 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22111 11 10 0 00000 111100000 0011111110 0 001 11111111111 12223333 2
Q ss_pred CCCCchhHHHHH----HHHHh---------------cCChHHHHHHHHHhhcC--ChHHHHHHHHHHHHc------CChh
Q 012360 147 SRRNIVSLNILI----NGYID---------------MELVDLAREVFDEIVDK--DIVLWRSMMHGCVKA------KQPE 199 (465)
Q Consensus 147 ~~~~~~~~~~l~----~~~~~---------------~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~------g~~~ 199 (465)
.+.++.+|..+. ..+.+ .-+.+....+|++...+ +...|+..|..|... ..+.
T Consensus 259 ~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~ 338 (568)
T KOG2396|consen 259 APDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRIL 338 (568)
T ss_pred CCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 233444443332 22221 11233445677776553 555666666665443 2445
Q ss_pred HHHHHHHHHHHc-CCCCC-HHHHHHHHHHhccchh-hHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-CCHHHHH-HH
Q 012360 200 EALELFKKMIDE-GVTPD-EEVMVSVLSACSSLSN-LQYGRLVHRFILQNNITQDAFVKTALIDMYSKC-GSLEEAL-VT 274 (465)
Q Consensus 200 ~a~~~~~~~~~~-~~~~~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~-~~ 274 (465)
....+++...+. +..++ ...|..+.-.++.... ...|..+..+. +..+...+..-+....+. .+.+--. +.
T Consensus 339 h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l 414 (568)
T KOG2396|consen 339 HTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEEL 414 (568)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 556666665543 23333 3345544444444433 33344443333 334444554444444422 1222221 11
Q ss_pred HhcCC----CCChhhHHHHHHHHHHcCC-hHH-HH-HHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhc
Q 012360 275 FYKTD----CKDVVTWTTMIEGLANYGL-GNE-AL-RVFYQMERKGIKPNEATF-VSVLAACRHSGLITEGCQLFRRMGG 346 (465)
Q Consensus 275 ~~~~~----~~~~~~~~~l~~~~~~~~~-~~~-a~-~~~~~m~~~g~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (465)
|.... .+-...|+... .++ ... .. .++...... ..|+..|+ +.++.-+.+.|-..+|...+..+..
T Consensus 415 ~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~ 488 (568)
T KOG2396|consen 415 FNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE 488 (568)
T ss_pred HHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 22221 22333444443 122 111 11 222223333 36666655 5567778889999999999999986
Q ss_pred CCCCCCChhhHHHHHHHHH---hcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHH-hCCCCc
Q 012360 347 VYRVQPTIEHFVCLVDLLS---RAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMK-LGNQSH 420 (465)
Q Consensus 347 ~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~ 420 (465)
-.+|+...|..++..-. .+| ...+.+.++.+.. -.++..|...+..-...|..+.+-.++.++.+ ++|...
T Consensus 489 --lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~~ 565 (568)
T KOG2396|consen 489 --LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGESA 565 (568)
T ss_pred --CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhhh
Confidence 34567888887776432 334 7778888887754 24778898888888899999999999888877 455543
No 382
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=73.90 E-value=1.2e+02 Score=31.90 Aligned_cols=255 Identities=11% Similarity=-0.010 Sum_probs=142.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCC
Q 012360 171 REVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250 (465)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 250 (465)
..+...+..++..+-...+..+.+.+..+ +...+..+++ .++...-...+.++...+........+..+.+. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 35555556778888888888887777544 5555555553 234333334444443332211122333333332 4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 012360 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330 (465)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 330 (465)
+..+-...+.++...+..+ ...+...+..+|...-...+.++.+.+..+. +..... .++...-...+.++..
T Consensus 697 d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHH
Confidence 5555556666665443211 2234445556666655556666665554332 222221 4566666667777777
Q ss_pred cCCHHH-HHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHH
Q 012360 331 SGLITE-GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409 (465)
Q Consensus 331 ~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 409 (465)
.+..+. +...+..+.. .++...-...+.++...|..+.+...+..+...++..+-...+.++...+. +++...+
T Consensus 769 ~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred hccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 665443 3455556554 256777778888888888876665555555556676666677777777665 4455555
Q ss_pred HHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 410 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
-.+.+ -++..+....+.++.+.+.-..+...+....
T Consensus 844 ~~~L~--D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 844 VEALT--DPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHhc--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 55553 2334556677777777533445666665444
No 383
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.70 E-value=1e+02 Score=30.78 Aligned_cols=183 Identities=12% Similarity=0.074 Sum_probs=89.3
Q ss_pred hcCCHHHHHHHHhcCCC-----CC-----hhhHHHH--HHHHHHcCChHHHHHHHH--------HHHHCCCCCCHHHHHH
Q 012360 264 KCGSLEEALVTFYKTDC-----KD-----VVTWTTM--IEGLANYGLGNEALRVFY--------QMERKGIKPNEATFVS 323 (465)
Q Consensus 264 ~~~~~~~a~~~~~~~~~-----~~-----~~~~~~l--~~~~~~~~~~~~a~~~~~--------~m~~~g~~p~~~~~~~ 323 (465)
-.+++..|...++.+.. |+ ...+... .-.+...|+.+.|...|. .....+...+...+..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 46778778777765542 11 1122222 233445789999999997 4444443333333322
Q ss_pred H--HHHHH--hcCCHHH--HHHHHHHhhcCCCCCCC--hhhHHHH-HHHHHhcCC--HHHHHHHHHh----C-CCCCccc
Q 012360 324 V--LAACR--HSGLITE--GCQLFRRMGGVYRVQPT--IEHFVCL-VDLLSRAGL--LYQAEEFIKI----M-PAEDKFI 387 (465)
Q Consensus 324 l--~~~~~--~~~~~~~--a~~~~~~~~~~~~~~~~--~~~~~~l-~~~~~~~g~--~~~A~~~~~~----~-~~~~~~~ 387 (465)
+ +..+. .....++ +..+++.+.......|+ ..++..+ +.++..... ..++...+.. + ...++..
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 1 11122 2223333 77788777653233332 2233333 333322111 1233332221 1 1112221
Q ss_pred ----hHHHHHHHHHhcCChHHHHHHHHHHHHhC---CCCch-hH-----HHHHHHHhhcCChHHHHHHHHHHH
Q 012360 388 ----SYKALLSACITYSEFDLGKKVANNMMKLG---NQSHE-AY-----VLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 388 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~-~~-----~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+++.+...+. .|+..+..+......... |+... .| ..+...+...|+.++|.....+..
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 2333333333 688877777666665533 33233 34 244455778899999998887664
No 384
>PRK10941 hypothetical protein; Provisional
Probab=73.63 E-value=16 Score=31.61 Aligned_cols=64 Identities=5% Similarity=-0.154 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 358 VCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 358 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+.+-.+|.+.++++.|.++.+.+.. .| ++.-+.--+-.|.+.|.+..|..-++..++..|+++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 4555667778888888888777643 33 4555666666678888888888888888888887776
No 385
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.38 E-value=1.1e+02 Score=31.21 Aligned_cols=212 Identities=11% Similarity=-0.002 Sum_probs=116.6
Q ss_pred HHhCCChHHHHHHHHhh---CCCCCch-------hHHHHHH-HHHhcCChHHHHHHHHHhhc--------CChHHHHHHH
Q 012360 129 YAKCKEMDEALRLFDEM---GSRRNIV-------SLNILIN-GYIDMELVDLAREVFDEIVD--------KDIVLWRSMM 189 (465)
Q Consensus 129 ~~~~g~~~~A~~~~~~~---~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~ 189 (465)
.....++++|..++.++ -..|+.. .++.+-. .....|+.+.|.++.+.... .....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888877 1122211 2333322 23357888888887776532 2556677788
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-----HHhccchhhHh--HHHHHHHHHHc---CCC---CChhHHH
Q 012360 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL-----SACSSLSNLQY--GRLVHRFILQN---NIT---QDAFVKT 256 (465)
Q Consensus 190 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~~~--a~~~~~~~~~~---~~~---~~~~~~~ 256 (465)
.+..-.|++++|..+..+..+..-.-+...+..+. ..+...|+... ....+...... ..+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999999888776643333444333222 22445563322 22333333221 111 1123444
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC------CCChh----hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----CHHHHH
Q 012360 257 ALIDMYSKCGSLEEALVTFYKTD------CKDVV----TWTTMIEGLANYGLGNEALRVFYQMERKGIKP----NEATFV 322 (465)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~~~------~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~ 322 (465)
.+..++.+ ++.+..-..... .+... .+..|+......|+.++|...+.++......+ +..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 45555554 333332222211 12111 22367778888999999999999887654333 222222
Q ss_pred HHHHH--HHhcCCHHHHHHHHHH
Q 012360 323 SVLAA--CRHSGLITEGCQLFRR 343 (465)
Q Consensus 323 ~l~~~--~~~~~~~~~a~~~~~~ 343 (465)
..+.. ....|+.+.+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 22322 3457888888877776
No 386
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=73.23 E-value=11 Score=25.68 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=19.8
Q ss_pred ccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChh
Q 012360 30 RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSG 66 (465)
Q Consensus 30 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 66 (465)
..|+.+.|++++..++ +....|...+.++...|.-.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 3455555555555555 55555555555555555443
No 387
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.23 E-value=61 Score=28.03 Aligned_cols=159 Identities=15% Similarity=0.003 Sum_probs=73.5
Q ss_pred ccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCchhhHHHHHHHhcchhhhh-hhh
Q 012360 30 RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQL----IFEGIVADKITLVILFSACARLEKLH-YGK 104 (465)
Q Consensus 30 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~ 104 (465)
+++++++|.+++-. =...+.+.|+...|-++-..| .+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665543 234455666666655544333 33455666655555555444332111 122
Q ss_pred HHHHHHH---HhC--CccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc
Q 012360 105 TVHCYAT---KVG--LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179 (465)
Q Consensus 105 ~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 179 (465)
++.+.++ +.| ..-+......+...|.+.|++.+|+..|-.-+ .|+...+..++......|...++-
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~~~e~d-------- 141 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGYPSEAD-------- 141 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTSS--HH--------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcCCcchh--------
Confidence 2222222 222 12355667778888888888888887764432 333333333444333344333331
Q ss_pred CChHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 012360 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211 (465)
Q Consensus 180 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 211 (465)
.. ....+--|...++...|...++...+.
T Consensus 142 --lf-i~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 142 --LF-IARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp --HH-HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred --HH-HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11 112233356667777777776665543
No 388
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.92 E-value=26 Score=33.55 Aligned_cols=132 Identities=15% Similarity=0.083 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHhC-CCCC--ccch
Q 012360 315 KPNEATFVSVLAACRHS--GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS-RAGLLYQAEEFIKIM-PAED--KFIS 388 (465)
Q Consensus 315 ~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~~~--~~~~ 388 (465)
.|+..+...++.-.... ...+-+-.++-.|.. ...|--...| +...|. ..|+...|.+.+... ...| ....
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46666666655444332 233445555555543 2333222222 233343 478999999877654 3344 3445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
...|.....+.|-.-+|-.++.+.+.+.-..+-++..+++++....+.+.|++.++...+.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 6677788888888899999999999998777888999999999999999999999877654
No 389
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.80 E-value=66 Score=28.26 Aligned_cols=83 Identities=11% Similarity=-0.109 Sum_probs=40.2
Q ss_pred cchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCCCC-ChhhHHHHHHHHHH----cCCh
Q 012360 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK----CGSLEEALVTFYKTDCK-DVVTWTTMIEGLAN----YGLG 299 (465)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~ 299 (465)
..+++..+...+......+.. .....+...|.. ..+..+|..+|...... .+.....|...|.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCH
Confidence 455666777777666653322 333334444433 23455566666543332 23333334444443 2255
Q ss_pred HHHHHHHHHHHHCCC
Q 012360 300 NEALRVFYQMERKGI 314 (465)
Q Consensus 300 ~~a~~~~~~m~~~g~ 314 (465)
.+|..++.+.-+.|.
T Consensus 130 ~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 130 VKALKYYEKAAKLGN 144 (292)
T ss_pred HHHHHHHHHHHHcCC
Confidence 555555555555553
No 390
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.54 E-value=14 Score=26.37 Aligned_cols=52 Identities=15% Similarity=-0.036 Sum_probs=25.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhC
Q 012360 57 SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG 114 (465)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (465)
..+..+|++++| ++.- .....||...|..+- -.+.|-.+++...+.++..+|
T Consensus 48 ~sLmNrG~Yq~A--Ll~~--~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 48 SSLMNRGDYQEA--LLLP--QCHCYPDLEPWAALC--AWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHTT-HHHH--HHHH--TTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHhhHHHHHH--HHhc--ccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 455667777777 1111 122346666554443 345566666666666665555
No 391
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=72.15 E-value=1.4e+02 Score=31.61 Aligned_cols=255 Identities=12% Similarity=0.063 Sum_probs=150.6
Q ss_pred HHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 012360 140 RLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV 219 (465)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 219 (465)
.+...+. .++...-..-+..+.+.+..+....+...+..++...-...+.++.+.+........+..+++. +|..+
T Consensus 625 ~L~~~L~-D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~V 700 (897)
T PRK13800 625 ELAPYLA-DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVV 700 (897)
T ss_pred HHHHHhc-CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHH
Confidence 3333333 6777777777777777776554444555555666666666666665554322222334344432 45555
Q ss_pred HHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCh
Q 012360 220 MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299 (465)
Q Consensus 220 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (465)
-...+.++...+..+ ...+.. ..+ .++..+-...+.++.+.+..+. +......++...-...+.++...+..
T Consensus 701 R~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 701 RAAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccc
Confidence 555555554433211 122222 222 4556666666777766655433 23334456666666666777776654
Q ss_pred HH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 012360 300 NE-ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378 (465)
Q Consensus 300 ~~-a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 378 (465)
+. +...+..+.. .++...-...+.++...|..+.+...+..+..+ ++..+-...+.++.+.+. +++...+-
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d----~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA----SAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC----CChHHHHHHHHHHHhccc-cchHHHHH
Confidence 33 3455555543 457777788888998888876665556556543 566666677888888776 45666666
Q ss_pred hCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 379 IMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 379 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
.+...++...-...+.++.+.+....+...+..+.+
T Consensus 845 ~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666677777777777887775444567777776665
No 392
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.99 E-value=80 Score=28.89 Aligned_cols=55 Identities=7% Similarity=0.100 Sum_probs=32.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHh-hcCChHHHHHHHHHHH
Q 012360 393 LSACITYSEFDLGKKVANNMMKLGNQ-SHEAYVLLSNFYA-LEGHWTEVAEARRNMK 447 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~ 447 (465)
+..+.+.|-+..|.++.+-+..++|. ||......++.|+ +.++++--.++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 34455666777777777777777766 5554444454443 4556665555555443
No 393
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.85 E-value=15 Score=32.37 Aligned_cols=89 Identities=10% Similarity=0.010 Sum_probs=61.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC----CC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPA----ED--KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
.|..=.+-|.+..++..|...|.+-.. .| +...|+.=..+-...|++..|+.-..+++..+|.+...|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 344445566777777888877766433 22 334566555566667888888888888888888888888888888
Q ss_pred HhhcCChHHHHHHHH
Q 012360 430 YALEGHWTEVAEARR 444 (465)
Q Consensus 430 ~~~~g~~~~a~~~~~ 444 (465)
+....++++|....+
T Consensus 163 ~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 163 LLELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888877666655444
No 394
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.40 E-value=1.2e+02 Score=30.50 Aligned_cols=189 Identities=12% Similarity=0.058 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CC---------hh-hHHHHHHHHHHcCChH
Q 012360 235 YGRLVHRFILQNNITQ---DAFVKTALIDMYSKCGSLEEALVTFYKTDC-KD---------VV-TWTTMIEGLANYGLGN 300 (465)
Q Consensus 235 ~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~---------~~-~~~~l~~~~~~~~~~~ 300 (465)
+-..++.+|.++--.| ...+...++-.|....+++...++.+.+.. || +. .|.-.+.---+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 3445566666543233 344566677777777777777777765542 21 11 1222222223346777
Q ss_pred HHHHHHHHHHHC--CCCCCHHH-----HHHH--HHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCC-H
Q 012360 301 EALRVFYQMERK--GIKPNEAT-----FVSV--LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL-L 370 (465)
Q Consensus 301 ~a~~~~~~m~~~--g~~p~~~~-----~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 370 (465)
+|+...-.+.+. .+.||... |.-+ -+.|...+..+.|.++|++.. .+.|+...--.+...+...|+ +
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhc
Confidence 888777776654 24555432 2211 133445567788888888887 446765544444444444553 2
Q ss_pred HHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 371 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+...++ +.+. ..|-..+.+.|..+.-.++|+-.-= ..+-.-++++.+|...-+.|-
T Consensus 338 ens~El-q~Ig--------mkLn~LlgrKG~leklq~YWdV~~y------------~~asVLAnd~~kaiqAae~mf 393 (1226)
T KOG4279|consen 338 ENSLEL-QQIG--------MKLNSLLGRKGALEKLQEYWDVATY------------FEASVLANDYQKAIQAAEMMF 393 (1226)
T ss_pred cchHHH-HHHH--------HHHHHHhhccchHHHHHHHHhHHHh------------hhhhhhccCHHHHHHHHHHHh
Confidence 222222 1111 1122334567777777777764322 222333455555555555553
No 395
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.97 E-value=69 Score=27.73 Aligned_cols=85 Identities=12% Similarity=-0.029 Sum_probs=52.0
Q ss_pred HHHHHHHhcCCHHHHHHHH----hcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 012360 257 ALIDMYSKCGSLEEALVTF----YKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC---- 328 (465)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~---- 328 (465)
.=|++++..|++.+++... +.-.+-.+.....-|-.|.+.+.+..+.++-..-...--.-+...|..++..|
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 3467788888888876443 33333344555556667788888887777766554431122233466555444
Q ss_pred -HhcCCHHHHHHHH
Q 012360 329 -RHSGLITEGCQLF 341 (465)
Q Consensus 329 -~~~~~~~~a~~~~ 341 (465)
.-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 4468888888777
No 396
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=70.81 E-value=7.4 Score=32.17 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=36.0
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 364 LSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
..+.++.+.|.+++..... ......|-.+...--+.|+++.|.+.|++..+++|++..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3455666666666666543 224555666666666667777777777777777666544
No 397
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.74 E-value=20 Score=25.13 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=19.3
Q ss_pred HHHHHHHHhC-CCCchhHHHHHHHHhhcCChHHHHHHHH
Q 012360 407 KVANNMMKLG-NQSHEAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 407 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
+.+++....+ +..|.....|+..|.+.|+.+.|.+-|+
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFe 96 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFE 96 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHH
Confidence 3334443333 4445555555555555565555555554
No 398
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=70.43 E-value=80 Score=28.23 Aligned_cols=59 Identities=14% Similarity=0.003 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
....+.....+.|..+.-..+++.....++..--..++.++....+.+...++++....
T Consensus 171 lr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 171 LRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 33344444444444444444444444333444444455555555555555555555544
No 399
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.93 E-value=1.2e+02 Score=30.19 Aligned_cols=122 Identities=14% Similarity=0.012 Sum_probs=64.1
Q ss_pred HHHHHHHccCChHHHHHHhccCCCC----CcccHHH----H-HHHHHhcCChhHHHHHHHHHHHcC---CCCchhhHHHH
Q 012360 23 SLIHFYGRMALFTDARVLFDKMPFR----DVGSWNT----L-MSIYNDFSDSGEVLILFKQLIFEG---IVADKITLVIL 90 (465)
Q Consensus 23 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~----l-~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l 90 (465)
.++..+.+.+... |...+++..+. ....|.. + +..+...+++..|.+.++.....- ..|-...+..+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 4455666665544 77776664411 1122222 2 222223378888888888775432 23344445555
Q ss_pred HHHhc--chhhhhhhhHHHHHHHHhCC---------ccchhhHHHHHHHH--HhCCChHHHHHHHHhh
Q 012360 91 FSACA--RLEKLHYGKTVHCYATKVGL---------EYMLNMENALLLMY--AKCKEMDEALRLFDEM 145 (465)
Q Consensus 91 ~~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~ 145 (465)
+.+.. +.+..+.+.+.++.+..... .|-..++..+++.+ ...|+++.+...++++
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55544 33445556666665533221 23445555555544 4567777777776665
No 400
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=69.35 E-value=70 Score=27.15 Aligned_cols=160 Identities=8% Similarity=0.001 Sum_probs=79.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc
Q 012360 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH-SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367 (465)
Q Consensus 289 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (465)
++...-+.++++++...++++...+...+..-.+.|-.+|-. .|....+++++........-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 556677888999999999999888766666666666666532 34455556666655432111111 2222333322211
Q ss_pred ------CCHHHHHHHHHhCCC----CCccch-HHHHHHHH----Hh--cC-----ChHHHHHHHHHHHH-----hCCCCc
Q 012360 368 ------GLLYQAEEFIKIMPA----EDKFIS-YKALLSAC----IT--YS-----EFDLGKKVANNMMK-----LGNQSH 420 (465)
Q Consensus 368 ------g~~~~A~~~~~~~~~----~~~~~~-~~~l~~~~----~~--~~-----~~~~a~~~~~~~~~-----~~p~~~ 420 (465)
.--.+...+++.... .+.... |..+-.-| +. .| -.+.|.+.|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 112234444444321 111111 11111111 11 11 23667778887766 456666
Q ss_pred hhH----HHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 421 EAY----VLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 421 ~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.-. +.-+..|...|+.++|.++.+...+.
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 622 22223445689999998888776543
No 401
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.02 E-value=13 Score=22.65 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=23.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 422 AYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 422 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
....++.++.+.|++++|+++.+.+.+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 35678899999999999999999887653
No 402
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.93 E-value=1.1e+02 Score=29.04 Aligned_cols=108 Identities=6% Similarity=-0.123 Sum_probs=72.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhc--CCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----------CC----
Q 012360 326 AACRHSGLITEGCQLFRRMGG--VYRVQPT-----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA----------ED---- 384 (465)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~---- 384 (465)
+-+.-.|++.+|.+++-..-- ..|...+ -..+|.|...+.+.|.+.-+..+|.+... +|
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 334557999999988775421 1122222 22346666667777777766666654431 12
Q ss_pred ------ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhc
Q 012360 385 ------KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE 433 (465)
Q Consensus 385 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 433 (465)
.-.......-.|...|++-.|.+.|.+.++..-.+|..|..|+.+|...
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1112233455678999999999999999999988899999999999865
No 403
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=68.77 E-value=28 Score=32.09 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC----------ccchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 359 CLVDLLSRAGLLYQAEEFIKIMPAED----------KFISYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 359 ~l~~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
.|++.++-.|++..|+++++.+.-.. .+.++-.++-+|.-.+++.+|++.|...+-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888888877663311 344566667777777777777777776644
No 404
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.63 E-value=1e+02 Score=28.78 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=33.3
Q ss_pred hhHHHHHhccCCcchh--hhHHHHHHHccCChHHHHHHhccCCCCCcc--cHHHHHHHHHhcCChhHHHHHH
Q 012360 5 LHAHVTKTALDSDIYV--GNSLIHFYGRMALFTDARVLFDKMPFRDVG--SWNTLMSIYNDFSDSGEVLILF 72 (465)
Q Consensus 5 ~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~ 72 (465)
+.+.+++.|..|+... ..+.+...+..|+.+-+.-+++.-..++.. ....-+...+..|+.+.+..++
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 4556666676665433 344555566667766555555543322211 1112233444556665544433
No 405
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.46 E-value=1.3e+02 Score=29.98 Aligned_cols=86 Identities=12% Similarity=0.126 Sum_probs=39.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh---c
Q 012360 258 LIDMYSKCGSLEEALVTFYKT--DCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRH---S 331 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~---~ 331 (465)
....+.-.|.++.|.+++-+. ...+.+.+...+.-|.-.+-.+... ..+.... -.|...-+..||..|.+ .
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445667789999999999872 2233444433333222111111111 2222110 01122557777877765 5
Q ss_pred CCHHHHHHHHHHhhc
Q 012360 332 GLITEGCQLFRRMGG 346 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~ 346 (465)
.++.+|.+++--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 688889988888764
No 406
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.42 E-value=16 Score=29.78 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 316 PNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 316 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
|+...|..++.++...|+.++|.++.+++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333333334444444444433333333
No 407
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.57 E-value=85 Score=27.40 Aligned_cols=66 Identities=11% Similarity=0.014 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 012360 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379 (465)
Q Consensus 314 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (465)
-.++..+...++..++..+++..-.++++......+...|...|..+++.....|+..-..++.++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 466667777777888888888888888877765333455677777788888888877777777664
No 408
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.51 E-value=26 Score=26.45 Aligned_cols=68 Identities=12% Similarity=0.029 Sum_probs=50.1
Q ss_pred CCccchHHHHHHHHHhcC---ChHHHHHHHHHHHHhC-CC-CchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 383 EDKFISYKALLSACITYS---EFDLGKKVANNMMKLG-NQ-SHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 383 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.+...+--.+.+++.+.. +..+.+.+++...+.. |. .....+.|+.++.+.|+|+.++++.+.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 344555666777777655 4667888999998733 43 33456788899999999999999999886543
No 409
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.54 E-value=35 Score=25.31 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHH
Q 012360 69 LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK 112 (465)
Q Consensus 69 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (465)
.+-++.+...++.|++......+++|-+.+++..|.++|+-...
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444455555666666666666666666666666666665543
No 410
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=65.21 E-value=32 Score=26.33 Aligned_cols=65 Identities=11% Similarity=0.138 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHH
Q 012360 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438 (465)
Q Consensus 371 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 438 (465)
+.|.++.+-|. ...............|++..|.++.+.++..+|++.......+.+|.+.|.-.+
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 44555555553 222333444556678999999999999999999999988888998887775443
No 411
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.14 E-value=11 Score=28.28 Aligned_cols=32 Identities=13% Similarity=0.327 Sum_probs=22.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 012360 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFSA 93 (465)
Q Consensus 60 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 93 (465)
-+.|.-..|..+|++|++.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3456667788888888888877764 5666554
No 412
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.96 E-value=93 Score=26.92 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=43.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012360 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329 (465)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 329 (465)
.++.....+...|.+.|++.+|...|-....++...+..++......+...++ +. -....+--|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dl-fi~RaVL~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DL-FIARAVLQYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hH-HHHHHHHHHH
Confidence 45677888889999999999998877555443333332232222222222221 11 1222333455
Q ss_pred hcCCHHHHHHHHHHhhc
Q 012360 330 HSGLITEGCQLFRRMGG 346 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~ 346 (465)
-.++...|...++...+
T Consensus 153 ~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTS 169 (260)
T ss_dssp HTTBHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 66788888877766654
No 413
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.62 E-value=63 Score=24.86 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=69.5
Q ss_pred HHHHHhccCCcc--hhhhHHHHHHHccCChHHHHHHhccCC---------CCCcccHHHHHHHHHhcCC-hhHHHHHHHH
Q 012360 7 AHVTKTALDSDI--YVGNSLIHFYGRMALFTDARVLFDKMP---------FRDVGSWNTLMSIYNDFSD-SGEVLILFKQ 74 (465)
Q Consensus 7 ~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 74 (465)
..|.+.+..++. ...|.++.-.+..+++...+.+++.+. ..+-..|++++.+.+...- ---+..+|..
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 334555555554 356778888788888888888888775 2366789999999876665 4557888999
Q ss_pred HHHcCCCCchhhHHHHHHHhcchh
Q 012360 75 LIFEGIVADKITLVILFSACARLE 98 (465)
Q Consensus 75 m~~~~~~~~~~~~~~l~~~~~~~~ 98 (465)
|.+.+.++++.-|..++.++.+-.
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcCC
Confidence 988888999999999999887653
No 414
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=64.19 E-value=17 Score=31.57 Aligned_cols=47 Identities=6% Similarity=0.156 Sum_probs=25.7
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 012360 398 TYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
+.|+.++|..+|+.++.+.|+++.+...++......++.-+|-.++-
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 45555666666666666666665555555555544444444444443
No 415
>PRK13342 recombination factor protein RarA; Reviewed
Probab=64.11 E-value=1.3e+02 Score=28.26 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=28.7
Q ss_pred HHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012360 184 LWRSMMHGCVK---AKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227 (465)
Q Consensus 184 ~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (465)
.+..++.++.+ .++.+.|+.++..|.+.|..|....-..+..++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34445555554 478888888999998888777654444444443
No 416
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.31 E-value=20 Score=22.76 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 317 NEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
|..--..++.++...|++++|.++++.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33333445566666666666666665554
No 417
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.08 E-value=47 Score=26.62 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=12.9
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.|.+.|.+++|.+++++..+ +|++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 44455555555555555544 444443
No 418
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=62.73 E-value=11 Score=28.28 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=25.9
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012360 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227 (465)
Q Consensus 192 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (465)
..+-|.-..|.++|.+|++.|-+||. ++.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34557778899999999999999984 56666543
No 419
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.57 E-value=56 Score=23.62 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMER 311 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 311 (465)
-|..|+..|...|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466666666666666666666666655
No 420
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.24 E-value=31 Score=20.48 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=20.4
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 012360 60 NDFSDSGEVLILFKQLIFEGIVADKITLVILFS 92 (465)
Q Consensus 60 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 92 (465)
.+.|-..++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666667777766666666665555543
No 421
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.56 E-value=50 Score=22.69 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChH
Q 012360 265 CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300 (465)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (465)
.|+.+.|.+++..+. ..+..|...+.++...|.-+
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 355555555555555 44555555555555554433
No 422
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.48 E-value=1.3e+02 Score=27.30 Aligned_cols=57 Identities=7% Similarity=-0.056 Sum_probs=27.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch----hhHHHHHHHhcchhhhhhhhHHHH
Q 012360 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADK----ITLVILFSACARLEKLHYGKTVHC 108 (465)
Q Consensus 51 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~ 108 (465)
+.+.+-.++.+.+.+...+++..+.... ..|.. .....++..|.+.+++..+...++
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld 164 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIHADLLQLCLEAKDYASVLPYLD 164 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhHHHHHHHHHHhhcccccCCccc
Confidence 3455555556556555555544444332 12222 223345555556666665555443
No 423
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=61.23 E-value=20 Score=31.22 Aligned_cols=80 Identities=1% Similarity=-0.012 Sum_probs=53.1
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHH-HHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHH
Q 012360 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKA-LLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425 (465)
Q Consensus 349 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 425 (465)
.+..|+..|...+....+.|.+.+.-.++.+... +| |+..|-. ...-+...++++.+..++.+.+..+|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 3445666666666656666777777777766543 44 5555533 2233456788888899999999988888887765
Q ss_pred HHH
Q 012360 426 LSN 428 (465)
Q Consensus 426 l~~ 428 (465)
...
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 543
No 424
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.51 E-value=38 Score=21.49 Aligned_cols=30 Identities=23% Similarity=0.291 Sum_probs=17.5
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 012360 181 DIVLWRSMMHGCVKAKQPEEALELFKKMID 210 (465)
Q Consensus 181 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 210 (465)
|-.-.-.+|.++...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344556667777777777776666554
No 425
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.92 E-value=2.4e+02 Score=30.10 Aligned_cols=120 Identities=15% Similarity=0.150 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchHHHHHHH
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSA 395 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 395 (465)
|..+++.+-+.+-.+.+.++-..+.+ .++++ ..+++.+.+-....|.+.+|.+.+-.... .........++..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56666777777777777777666665 23222 33455666666677777776665544332 1123455666666
Q ss_pred HHhcCChH------------HHHH-HHHHHHHhCCCC-chhHHHHHHHHhhcCChHHHHHH
Q 012360 396 CITYSEFD------------LGKK-VANNMMKLGNQS-HEAYVLLSNFYALEGHWTEVAEA 442 (465)
Q Consensus 396 ~~~~~~~~------------~a~~-~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~ 442 (465)
++.+|+++ +... +++..-...|.. ...|..|--.+...+++.+|-.+
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 66666543 2333 333333333332 23344444445566777776544
No 426
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=59.77 E-value=1.1e+02 Score=25.91 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=31.9
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 012360 383 EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 383 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 432 (465)
.|.+.....++..|. .+++++|.+++.+..+++-++......+.+++-.
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~ 284 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLFRVVKN 284 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 556666666666554 4678888888888888875555545555555433
No 427
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.36 E-value=54 Score=26.32 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHCCCCCC--HHHH-----HHHHHHHHhcCCHHHHHHHHHHhhc
Q 012360 299 GNEALRVFYQMERKGIKPN--EATF-----VSVLAACRHSGLITEGCQLFRRMGG 346 (465)
Q Consensus 299 ~~~a~~~~~~m~~~g~~p~--~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (465)
.+.|+.+|+.+.+.--.|. .... ...+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 5566666666655422221 1111 1223345566666666666666653
No 428
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.68 E-value=67 Score=23.24 Aligned_cols=27 Identities=7% Similarity=0.106 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577777778888888888888887776
No 429
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=58.28 E-value=84 Score=29.15 Aligned_cols=120 Identities=13% Similarity=0.025 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCC-----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHH
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYR-----VQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 394 (465)
...|++.++-.||+..|+++++.+.-..+ +++ .+.++..+.-+|.-.+++.+|.+.|..+. .|-.=.+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL------~yi~r~k 198 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL------LYIQRTK 198 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhh
Confidence 34566888999999999999998853211 122 35677788899999999999999998876 3322222
Q ss_pred -H-HHhcCChHHHHHHHHHHHH-------hCCC--CchhHHHHHHHH------hhcCChHHHHHHHHHH
Q 012360 395 -A-CITYSEFDLGKKVANNMMK-------LGNQ--SHEAYVLLSNFY------ALEGHWTEVAEARRNM 446 (465)
Q Consensus 395 -~-~~~~~~~~~a~~~~~~~~~-------~~p~--~~~~~~~l~~~~------~~~g~~~~a~~~~~~~ 446 (465)
. ..+..+++...+..++|.. +.|. +.++...+=.-| .+.|+.+.-.++|...
T Consensus 199 ~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~a 267 (404)
T PF10255_consen 199 NQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFA 267 (404)
T ss_pred hhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhh
Confidence 1 2233455555555555544 4564 333333333332 2345555556666544
No 430
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=57.93 E-value=21 Score=31.09 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=27.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhH
Q 012360 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87 (465)
Q Consensus 51 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 87 (465)
-|+..|....+.||+++|+.++++.++.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4677788888888888888888888887765444444
No 431
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=57.72 E-value=38 Score=29.12 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=39.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 392 LLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+=..+.+.++++.|....++.+.++|.++.-+.--+-+|.+.|.+.-|++-++...
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~ 242 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFV 242 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHH
Confidence 33456667777777777777777777777666777777777777777776666543
No 432
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=57.29 E-value=24 Score=30.72 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 012360 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMV 221 (465)
Q Consensus 183 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 221 (465)
.-|+..|....+.|++++|+.++++..+.|..--..+|.
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 346788888888899999999999888888765555553
No 433
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=57.16 E-value=18 Score=30.09 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=43.0
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
...+.++.+.+.+++.++.. -.+.....|..+...-.+.|+++.|.+-+++..+
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 34567888899999998884 3345678888888888999999999998887654
No 434
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.14 E-value=39 Score=20.04 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=23.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012360 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 326 (465)
.+.|-..++..++++|.+.|+.-++..+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777788877777777777766654
No 435
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.96 E-value=34 Score=27.89 Aligned_cols=35 Identities=9% Similarity=-0.033 Sum_probs=25.0
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 383 EDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 383 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
.|++.+|..++.++...|+.++|.+..+++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 56666777777777777777777777777777776
No 436
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=55.66 E-value=34 Score=18.84 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=8.2
Q ss_pred HHHHHHhcCChHHHHHH
Q 012360 392 LLSACITYSEFDLGKKV 408 (465)
Q Consensus 392 l~~~~~~~~~~~~a~~~ 408 (465)
+...+-..|++++|+++
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 34444455555555555
No 437
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=55.41 E-value=18 Score=31.54 Aligned_cols=64 Identities=3% Similarity=-0.117 Sum_probs=52.4
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHH-HHHHHhhcCChHHHHHHHHHHH
Q 012360 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL-LSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 384 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
.|+..|...+.-..+.|-+.+.-.++.++++..|.+...|.. ...-+...++++.++.++.+-.
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~gl 169 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGL 169 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhh
Confidence 367778877776677888999999999999999999997765 5566778899999999888443
No 438
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=54.83 E-value=1.5e+02 Score=26.03 Aligned_cols=146 Identities=12% Similarity=0.039 Sum_probs=74.1
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh----ccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh----
Q 012360 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC----SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK---- 264 (465)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 264 (465)
...+++..+...+......+.. .....+...+ ....+...|...+....+.|. ......+...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCc
Confidence 3456677777777777664322 2222333332 234456778888886666653 2333445555554
Q ss_pred cCCHHHHHHHHhcCCCC-Chhh---HHHHHHHHHHcC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 012360 265 CGSLEEALVTFYKTDCK-DVVT---WTTMIEGLANYG-------LGNEALRVFYQMERKGIKPNEATFVSVLAACRH--- 330 (465)
Q Consensus 265 ~~~~~~a~~~~~~~~~~-~~~~---~~~l~~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--- 330 (465)
..+..+|..+|++..+. +... ...+...|.... +...|...+.+.-..+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 33777777777765543 2222 333333333321 1224556666655554 22333333333322
Q ss_pred -cCCHHHHHHHHHHhhcC
Q 012360 331 -SGLITEGCQLFRRMGGV 347 (465)
Q Consensus 331 -~~~~~~a~~~~~~~~~~ 347 (465)
..+..+|..+|.+..+.
T Consensus 203 v~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred CCcCHHHHHHHHHHHHHC
Confidence 23556666666666543
No 439
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=54.35 E-value=86 Score=23.17 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=33.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHH-------HhCCCCchhH----HHHHHHHhhcCChHHHHHHHHH
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMM-------KLGNQSHEAY----VLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
.++..|..++...|++++++..-+.++ +++.+....| ..-+.++...|+.++|...|+.
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 344555566666676666554444433 3444444434 3445677788999999888874
No 440
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=54.13 E-value=1.7e+02 Score=26.37 Aligned_cols=133 Identities=8% Similarity=0.024 Sum_probs=83.7
Q ss_pred CChhhHHHHHHHHHHcCC------------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 012360 281 KDVVTWTTMIEGLANYGL------------GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348 (465)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 348 (465)
.|+.+|-.++..--..-. .+.-+.++++..+.+ +.+......++..+.+..+.+...+.++++...
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~- 94 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK- 94 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-
Confidence 367788888765433211 345567788877772 234556677778888888888888889888863
Q ss_pred CCCCChhhHHHHHHHHHh---cCCHHHHHHHHHhC-------CCCC------c-------cchHHHHHHHHHhcCChHHH
Q 012360 349 RVQPTIEHFVCLVDLLSR---AGLLYQAEEFIKIM-------PAED------K-------FISYKALLSACITYSEFDLG 405 (465)
Q Consensus 349 ~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~-------~~~~------~-------~~~~~~l~~~~~~~~~~~~a 405 (465)
.+-+...|...++.... .-.++....+|.+. .... - ...+..+...+...|..+.|
T Consensus 95 -~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 -NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred -CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 23466777777665444 22455665555443 1111 0 11233344445678888999
Q ss_pred HHHHHHHHHhC
Q 012360 406 KKVANNMMKLG 416 (465)
Q Consensus 406 ~~~~~~~~~~~ 416 (465)
..+++.+++.+
T Consensus 174 va~~Qa~lE~n 184 (321)
T PF08424_consen 174 VALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHH
Confidence 99999888866
No 441
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.92 E-value=21 Score=35.98 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=24.3
Q ss_pred HhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHH
Q 012360 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMM 413 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (465)
..+|+.+.|++.-.++. +..+|..|+......|+.+-|+-.|++..
T Consensus 654 Le~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred hhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 34555555555544443 34455555555555555555555555543
No 442
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=53.87 E-value=1.6e+02 Score=29.10 Aligned_cols=72 Identities=14% Similarity=0.275 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHhh-----CCCCCchhHHHHHHHHHhcCChHH------HHHHHHHh-hcCChHHHHHHHH
Q 012360 123 NALLLMYAKCKEMDEALRLFDEM-----GSRRNIVSLNILINGYIDMELVDL------AREVFDEI-VDKDIVLWRSMMH 190 (465)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~-~~~~~~~~~~l~~ 190 (465)
.+|..+|...|++-.+.++++.+ +.+.-...||..|+.+.+.|.++- |.+.++.. ..-|..||..++.
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 37888899999999999998887 323344567778888888886542 22333222 2336666766666
Q ss_pred HHHH
Q 012360 191 GCVK 194 (465)
Q Consensus 191 ~~~~ 194 (465)
+-..
T Consensus 112 ~sln 115 (1117)
T COG5108 112 ASLN 115 (1117)
T ss_pred hhcC
Confidence 5443
No 443
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=53.24 E-value=75 Score=24.51 Aligned_cols=62 Identities=8% Similarity=-0.018 Sum_probs=31.9
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCC
Q 012360 71 LFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133 (465)
Q Consensus 71 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (465)
+.+.+.+.|++++.. -..+++.+...++.-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334445556554433 23455555555555667777777776655554444333334444433
No 444
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.99 E-value=43 Score=28.67 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=9.8
Q ss_pred HHHHHhcCCHHHHHHHHHHh
Q 012360 325 LAACRHSGLITEGCQLFRRM 344 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~ 344 (465)
..-|...|++++|.++|+.+
T Consensus 185 A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 34444455555555555544
No 445
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=52.89 E-value=27 Score=32.49 Aligned_cols=103 Identities=11% Similarity=0.013 Sum_probs=73.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhc
Q 012360 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV-LAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRA 367 (465)
Q Consensus 290 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 367 (465)
+..+...+.++.|..++.+.++. .||...|... ..++.+.+++..|+.=+.++.+. .| ....|..=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 34556778899999999999987 7876555433 38888999999999988888853 34 344454455667777
Q ss_pred CCHHHHHHHHHhCCC-CCccchHHHHHHHHH
Q 012360 368 GLLYQAEEFIKIMPA-EDKFISYKALLSACI 397 (465)
Q Consensus 368 g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~ 397 (465)
+.+.+|...|+.... .|+..-...++.-|-
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 888888888877644 566665555555543
No 446
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.82 E-value=1.9e+02 Score=28.65 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=32.4
Q ss_pred HHHHHhcchhhhhhhhHHHHHHHHhC--CccchhhHHHHHHHHHhCCChH------HHHHHHHhhCCCCCchhHHHHHHH
Q 012360 89 ILFSACARLEKLHYGKTVHCYATKVG--LEYMLNMENALLLMYAKCKEMD------EALRLFDEMGSRRNIVSLNILING 160 (465)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~l~~~ 160 (465)
+++.+|...|++..+.++++...... -+.=...+|..++...+.|.++ .|.+.++...+..|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 34444444444444444444444321 1111223344444444444322 344444444445555556555554
Q ss_pred HHh
Q 012360 161 YID 163 (465)
Q Consensus 161 ~~~ 163 (465)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 447
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=52.53 E-value=2e+02 Score=26.92 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHH
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACI 397 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 397 (465)
...|+.-|...|+..+|.+.++++-- .+-....++.+++.+..+.|+-.....++++.-.. ...|-+.|-++|-
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgm--PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s-glIT~nQMtkGf~ 585 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGM--PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS-GLITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCC--CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-CceeHHHhhhhhh
Confidence 45667777788888888888877653 22234556677888888877776666666655422 2334455555543
No 448
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.25 E-value=2.1e+02 Score=26.71 Aligned_cols=15 Identities=27% Similarity=0.102 Sum_probs=7.4
Q ss_pred HccCChHHHHHHhcc
Q 012360 29 GRMALFTDARVLFDK 43 (465)
Q Consensus 29 ~~~~~~~~A~~~~~~ 43 (465)
++.|+.+-+..+++.
T Consensus 10 ~~~g~~~iv~~Ll~~ 24 (413)
T PHA02875 10 ILFGELDIARRLLDI 24 (413)
T ss_pred HHhCCHHHHHHHHHC
Confidence 344555555555543
No 449
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=51.03 E-value=50 Score=21.23 Aligned_cols=33 Identities=15% Similarity=-0.029 Sum_probs=15.6
Q ss_pred CchhhHHHHHHHhcchhhhhhhhHHHHHHHHhC
Q 012360 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVG 114 (465)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (465)
|+...++.++...+.-.-.+.+...+....+.|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333444444454444444555555555555444
No 450
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.78 E-value=5.7e+02 Score=31.56 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLL 426 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 426 (465)
++.-+....+.|+.++|.+.|..++++.-.-+..|..-
T Consensus 2815 f~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~W 2852 (3550)
T KOG0889|consen 2815 FTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEW 2852 (3550)
T ss_pred HHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHH
Confidence 34444445577777777777777777653333334333
No 451
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.71 E-value=78 Score=24.42 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=39.0
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchh
Q 012360 36 DARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE 98 (465)
Q Consensus 36 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 98 (465)
++.+.++.-.-+-..--..++..+.+.++.-.|.++|+.+.+.+...+..|....++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344444443322233345677777888787889999999988776666666555555555444
No 452
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.47 E-value=1.7e+02 Score=25.32 Aligned_cols=135 Identities=10% Similarity=0.063 Sum_probs=70.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCC
Q 012360 293 LANYGLGNEALRVFYQMERKGIKPNEA---TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL 369 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 369 (465)
+.+..+...|+++-...+.. .|-.. .|...+--... .+..+-++.++++.+. .+.+-.+|..=-......|+
T Consensus 53 ~~~~E~S~RAl~LT~d~i~l--NpAnYTVW~yRr~iL~~l~-~dL~~El~~l~eI~e~--npKNYQvWHHRr~ive~l~d 127 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRL--NPANYTVWQYRRVILRHLM-SDLNKELEYLDEIIED--NPKNYQVWHHRRVIVELLGD 127 (318)
T ss_pred HhccccCHHHHHHHHHHHHh--CcccchHHHHHHHHHHHhH-HHHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHhcC
Confidence 34556667777777777665 33222 23322222111 2455666677777653 33444444322222233344
Q ss_pred HH-HHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 012360 370 LY-QAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 370 ~~-~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 432 (465)
+. .=+++.+.|.. ..+-..|..=-.++..-++++.-+.+..++++.+..+-++|+.-......
T Consensus 128 ~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~ 193 (318)
T KOG0530|consen 128 PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITN 193 (318)
T ss_pred cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEe
Confidence 44 44555555543 23445565555666666777777777777777775555556554443333
No 453
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=50.46 E-value=1.9e+02 Score=25.86 Aligned_cols=58 Identities=7% Similarity=-0.028 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhc-CChHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 012360 154 LNILINGYIDMELVDLAREVFDEIVD-KDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211 (465)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 211 (465)
...++....+.|..+.-..+++.... ++......++.+++...+.+...++++.....
T Consensus 172 r~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 172 RWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSN 230 (324)
T ss_dssp HHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCC
Confidence 33444444455554444444444332 24445556666666666666666666666553
No 454
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=50.22 E-value=32 Score=23.48 Aligned_cols=29 Identities=7% Similarity=0.227 Sum_probs=13.9
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 012360 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLI 76 (465)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 76 (465)
|...|..+++.+.-+=-++...++++.|.
T Consensus 42 dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 42 DPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred ChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44445555544444444444455555543
No 455
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=50.19 E-value=67 Score=25.57 Aligned_cols=37 Identities=3% Similarity=-0.281 Sum_probs=16.0
Q ss_pred hhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCC
Q 012360 98 EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134 (465)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 134 (465)
++.-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3334444555555444444444333333444444443
No 456
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=50.04 E-value=1.1e+02 Score=22.96 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhC--CCCchhHHHHHHHHhhcCChHHHHHHHH
Q 012360 403 DLGKKVANNMMKLG--NQSHEAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 403 ~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
++..++|..|...+ ...+..|...+..+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34567788887754 5666678888888888899999888876
No 457
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=49.62 E-value=2e+02 Score=25.92 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=25.5
Q ss_pred HHHcCChHHHHHHHHHHHHC--CCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHh
Q 012360 293 LANYGLGNEALRVFYQMERK--GIKPNEA-------TFVSVLAACRHSGLITEGCQLFRRM 344 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~--g~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~ 344 (465)
....++.+++..++..+... |...+.. +...+.+.+.+.|+.++-..+....
T Consensus 14 ~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~ 74 (411)
T KOG1463|consen 14 LVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSL 74 (411)
T ss_pred hcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34445556666666666542 2222222 2334445555555555555544444
No 458
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=48.42 E-value=2.8e+02 Score=27.40 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=16.7
Q ss_pred chhhhHHHHHHHccCChHHHHHHhccCC
Q 012360 18 IYVGNSLIHFYGRMALFTDARVLFDKMP 45 (465)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 45 (465)
+.-|+ .+..+.-.|.++.|.+++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 44444 5667777788888888885544
No 459
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=48.42 E-value=1.5e+02 Score=24.16 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=30.8
Q ss_pred HHHHhccchhhHhHHHHHHHHHHcCC--------------CCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 012360 223 VLSACSSLSNLQYGRLVHRFILQNNI--------------TQDAFVKTALIDMYSKCGSLEEALVTFYK 277 (465)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 277 (465)
++-.|-+..++.+..++++.+-+..+ .+--.+.|...+.+.++|.++.|+.++++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34445555566666666655544321 22233455666666777777777776654
No 460
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.20 E-value=85 Score=21.86 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=13.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhc
Q 012360 324 VLAACRHSGLITEGCQLFRRMGG 346 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~ 346 (465)
+...+...|++++|...+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445556777777776666653
No 461
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.74 E-value=58 Score=27.89 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 012360 358 VCLVDLLSRAGLLYQAEEFIKIM 380 (465)
Q Consensus 358 ~~l~~~~~~~g~~~~A~~~~~~~ 380 (465)
..+...|.+.|++++|.++|+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 35566667777777777777665
No 462
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.03 E-value=51 Score=21.20 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=37.2
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchh
Q 012360 46 FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE 98 (465)
Q Consensus 46 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 98 (465)
.+....++.++...++..-.++++..+.+....|. .+..+|..-++.+++..
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 45566778888888888888888899998888874 56666766666665543
No 463
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.70 E-value=71 Score=31.20 Aligned_cols=59 Identities=17% Similarity=0.190 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
.+.|.-+|....+.|.|.++++++.+.+|.++-.-.....+....|.-++|+.......
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 45566666777777777777777777777777666666777777777777777776654
No 464
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.69 E-value=2.8e+02 Score=26.86 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=34.6
Q ss_pred hHHHHHHHccCChHHHHHHhccCCCC--CcccH---HHHHHHHHhcCChhHHHHHHHHHHH
Q 012360 22 NSLIHFYGRMALFTDARVLFDKMPFR--DVGSW---NTLMSIYNDFSDSGEVLILFKQLIF 77 (465)
Q Consensus 22 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~ 77 (465)
.-|+.-|.+.+++++|..++..|.-. ....| +.+++.+.+..--.+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35677889999999999999888733 22333 3444555555444445555555544
No 465
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=45.98 E-value=2.5e+02 Score=25.97 Aligned_cols=53 Identities=11% Similarity=-0.107 Sum_probs=28.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHH--hcCCHHHHHHHHHH
Q 012360 291 EGLANYGLGNEALRVFYQMERKGIKPNEAT----FVSVLAACR--HSGLITEGCQLFRR 343 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~l~~~~~--~~~~~~~a~~~~~~ 343 (465)
..+.+.+++..|..+|+++......|.... |..+..+|. ..-++++|.+.+++
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 345566777777777777776644443332 222233332 24456666666654
No 466
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.54 E-value=52 Score=23.99 Aligned_cols=47 Identities=6% Similarity=0.030 Sum_probs=31.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhh
Q 012360 54 TLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKL 100 (465)
Q Consensus 54 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (465)
.++..+...+..-.|.++++.+.+.+..++..|....++.+...|-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 35566666667777888888888776666666665666666555543
No 467
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.36 E-value=2.1e+02 Score=25.02 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=24.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchhhH
Q 012360 55 LMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87 (465)
Q Consensus 55 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 87 (465)
+.+-..+.+++++|...|.+....|+..|..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 344556778889999999999888877766543
No 468
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.18 E-value=2.8e+02 Score=26.42 Aligned_cols=410 Identities=9% Similarity=0.014 Sum_probs=214.5
Q ss_pred HHHHccC--ChHHHHHHhccCC---CCC---cccHHHHHHHH-HhcCChhHHHHHHHHHHHcC-CCCch-----hhHHHH
Q 012360 26 HFYGRMA--LFTDARVLFDKMP---FRD---VGSWNTLMSIY-NDFSDSGEVLILFKQLIFEG-IVADK-----ITLVIL 90 (465)
Q Consensus 26 ~~~~~~~--~~~~A~~~~~~~~---~~~---~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~~-~~~~~-----~~~~~l 90 (465)
..+...| ++..+++.++.+- .|+ +.+.-.|...+ .-..+++.|...+++..... --|+- .+++.+
T Consensus 15 e~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlL 94 (629)
T KOG2300|consen 15 EHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLL 94 (629)
T ss_pred HHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHH
Confidence 3444455 5666666665443 221 12222233322 23467777777777653211 11222 245556
Q ss_pred HHHhcchh-hhhhhhHHHHHHHHhC--Cc-cchhhHHHHHHHHHhCCChHHHHHHHHhhC--CCCCchhHHHHHHHH---
Q 012360 91 FSACARLE-KLHYGKTVHCYATKVG--LE-YMLNMENALLLMYAKCKEMDEALRLFDEMG--SRRNIVSLNILINGY--- 161 (465)
Q Consensus 91 ~~~~~~~~-~~~~a~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~--- 161 (465)
...+.... .+..+..++...++.. .+ ........|+..+.-..|+..|.+++.-=. ..+-...|..++..+
T Consensus 95 a~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~ 174 (629)
T KOG2300|consen 95 AHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSML 174 (629)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHH
Confidence 66666555 7788888888887653 22 223334457778888899999999965431 122223343332222
Q ss_pred ---HhcCChHHHHHHHHH---hhc---CChH--------HHHHHHHHHHHcCChhHHHHHHHHHHHc---CCC-------
Q 012360 162 ---IDMELVDLAREVFDE---IVD---KDIV--------LWRSMMHGCVKAKQPEEALELFKKMIDE---GVT------- 214 (465)
Q Consensus 162 ---~~~~~~~~a~~~~~~---~~~---~~~~--------~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~------- 214 (465)
....+..++.++... +.+ +|.. -.+.-+..|.-.|+...+...++++.+. +-.
T Consensus 175 ~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e 254 (629)
T KOG2300|consen 175 MLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDE 254 (629)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccc
Confidence 223344455544443 322 2221 1223344566778888777777766542 211
Q ss_pred -----CCHHHHHHHH-------------HHhccchhhHhHHHHHHHHHHc----CCCC-ChhHH--------HHHHHHHH
Q 012360 215 -----PDEEVMVSVL-------------SACSSLSNLQYGRLVHRFILQN----NITQ-DAFVK--------TALIDMYS 263 (465)
Q Consensus 215 -----~~~~~~~~ll-------------~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~--------~~l~~~~~ 263 (465)
|....+..+. ..-...|-+++|.++-+++... ...+ ...++ ..++.+-.
T Consensus 255 ~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~l 334 (629)
T KOG2300|consen 255 KILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRL 334 (629)
T ss_pred cccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 2222111111 1112345666666665555432 1111 12222 22333334
Q ss_pred hcCCHHHHHHHHhcCCC-----CC--h-----hhHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHH
Q 012360 264 KCGSLEEALVTFYKTDC-----KD--V-----VTWTTMIEG-LANYGLGNEALRVFYQMERKGIKPNEATF--VSVLAAC 328 (465)
Q Consensus 264 ~~~~~~~a~~~~~~~~~-----~~--~-----~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~l~~~~ 328 (465)
-.|++.+|++-+..|.+ |. . .....++.. ++..+.++.|..-|....+.--.-|...+ ..+...|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 57899998877766542 22 1 112223333 45578899999999887765333343332 3455678
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCChhh-----HHHHHHHHHhcCCHHHHHHHHHhCCCCCccc--------hHHHHHHH
Q 012360 329 RHSGLITEGCQLFRRMGGVYRVQPTIEH-----FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI--------SYKALLSA 395 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~l~~~ 395 (465)
.+.|+.+.-.++++.+-..+..+.+... +..-.-.....+++.+|..++.+-....+.. ....|...
T Consensus 415 L~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v 494 (629)
T KOG2300|consen 415 LRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHV 494 (629)
T ss_pred HHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Confidence 8888888888888877643211111111 1111112346899999999988754322221 23334455
Q ss_pred HHhcCChHHHHHHHHHHHHhC---CCCchh---HHHHHHHHhhcCC
Q 012360 396 CITYSEFDLGKKVANNMMKLG---NQSHEA---YVLLSNFYALEGH 435 (465)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~---p~~~~~---~~~l~~~~~~~g~ 435 (465)
+...|+..++.+...-..++. |+-+.. ...+-..+...|+
T Consensus 495 ~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 495 FLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 667899999998888877744 554442 2233344555555
No 469
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.15 E-value=2.8e+02 Score=26.42 Aligned_cols=154 Identities=14% Similarity=0.032 Sum_probs=83.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHcC-CCCC-------HHHHHHHHHH-hccchhhHhHHHHHHHHHHcCCCCChh--HHHHH
Q 012360 190 HGCVKAKQPEEALELFKKMIDEG-VTPD-------EEVMVSVLSA-CSSLSNLQYGRLVHRFILQNNITQDAF--VKTAL 258 (465)
Q Consensus 190 ~~~~~~g~~~~a~~~~~~~~~~~-~~~~-------~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l 258 (465)
.+-.-.|+..+|++-...|.+.- -.|. ......++.. |...+.++.|..-|....+.--..+.. .-..+
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNL 410 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence 33345688888888888877631 1222 1122233333 345677788877777665543233332 23455
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhhHHHH--------HH--HHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHH
Q 012360 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTM--------IE--GLANYGLGNEALRVFYQMERKGIKPN-----EATFVS 323 (465)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l--------~~--~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ 323 (465)
.-.|.+.|+.+.-.++++.+..+|..++..- +. .....+++.+|...+.+-.+..-.-| .-....
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvL 490 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVL 490 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 6677788888777777777776644332211 11 12356788888887777554310111 111222
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 012360 324 VLAACRHSGLITEGCQLFRR 343 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~ 343 (465)
|-..+...|+..++.+...-
T Consensus 491 Ls~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 491 LSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred HHHHHHHhcchHHHHhccch
Confidence 33445556666666554443
No 470
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.52 E-value=2.6e+02 Score=25.89 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=12.7
Q ss_pred cCCHHHHHHHHHHhhcC
Q 012360 331 SGLITEGCQLFRRMGGV 347 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~ 347 (465)
.+++...+++++++...
T Consensus 317 ~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 317 SSKYASCLELLREIKPR 333 (466)
T ss_pred hhhHHHHHHHHHHhccc
Confidence 36788888888888753
No 471
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.33 E-value=2e+02 Score=24.46 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=34.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-cchhhHhHHHHHHHHHH
Q 012360 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS-SLSNLQYGRLVHRFILQ 245 (465)
Q Consensus 188 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 245 (465)
++..+-+.|+++++...++++...+...+..--+.+..+|- ..|....+..++..+.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 45566677888888888888887766666655555555542 23444455555555444
No 472
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.82 E-value=2e+02 Score=24.38 Aligned_cols=18 Identities=17% Similarity=0.562 Sum_probs=11.1
Q ss_pred HHHccCChHHHHHHhccC
Q 012360 27 FYGRMALFTDARVLFDKM 44 (465)
Q Consensus 27 ~~~~~~~~~~A~~~~~~~ 44 (465)
.+.-.+.+++|-++|...
T Consensus 23 lfgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERA 40 (288)
T ss_pred ccCCCcchHHHHHHHHHH
Confidence 344455777777777653
No 473
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=43.78 E-value=2.6e+02 Score=25.70 Aligned_cols=92 Identities=12% Similarity=0.174 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC--------ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch-------hH
Q 012360 359 CLVDLLSRAGLLYQAEEFIKIMPAED--------KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE-------AY 423 (465)
Q Consensus 359 ~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~ 423 (465)
.|...+-.+|+.++|..++.+++... -+....--++.|...+||-.|--+-++.....-+.+. .|
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY 215 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYY 215 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHH
Confidence 34445555556665555555544210 0001111223444555555555555554442211111 34
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 424 VLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 424 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
..++....+.+.+=++-+.++...+.|
T Consensus 216 ~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 216 ELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHhcccccchhhHHHHHHHHhccc
Confidence 455555555555555555555554443
No 474
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=42.92 E-value=62 Score=22.13 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=18.0
Q ss_pred cCChHHHHHHhccCCCCCcccHHHHHHHHHhcCC
Q 012360 31 MALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64 (465)
Q Consensus 31 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 64 (465)
..+.+.|.++++.++.++..+|.....++-..|.
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 3445555555555555555555555555554443
No 475
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.17 E-value=39 Score=30.09 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=45.1
Q ss_pred hcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 012360 366 RAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 443 (465)
..|.+++|++.|..... +| ....|..-.+++.+.++...|++-++.+++++|+...-|-.-..+....|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 34455555555554433 11 33333334445555555555555555555555555555555555555556666555555
Q ss_pred HHHHHhcC
Q 012360 444 RNMKELQT 451 (465)
Q Consensus 444 ~~~~~~~~ 451 (465)
....+.++
T Consensus 206 ~~a~kld~ 213 (377)
T KOG1308|consen 206 ALACKLDY 213 (377)
T ss_pred HHHHhccc
Confidence 55544444
No 476
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.04 E-value=2.1e+02 Score=24.11 Aligned_cols=166 Identities=15% Similarity=0.060 Sum_probs=0.0
Q ss_pred hHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHH--HHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHH
Q 012360 34 FTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVL--ILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111 (465)
Q Consensus 34 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~--~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (465)
..+...+++.+..++.......--.|.-.-+.+... ...++....-.-|....-.+-.-.+...++++.|.+.+
T Consensus 26 ~~~L~~Ll~~i~~~~~~~~~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L---- 101 (226)
T PF13934_consen 26 DNDLRALLDLILSSNVSLLKKHSLFYYLLLDLDDTRPSELAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELL---- 101 (226)
T ss_pred HHHHHHHHHHHhcCCcCHHHhHHHHHHHHHhcCccccccHHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHh----
Q ss_pred HhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCC-hHHHHHHHH
Q 012360 112 KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD-IVLWRSMMH 190 (465)
Q Consensus 112 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~ 190 (465)
............++.++...|+.+.|..+++..+-.++...-..+......++.+.+|..+-+...++. ...+..++.
T Consensus 102 -~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~La~~~v~EAf~~~R~~~~~~~~~l~e~l~~ 180 (226)
T PF13934_consen 102 -SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVALANGLVTEAFSFQRSYPDELRRRLFEQLLE 180 (226)
T ss_pred -CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCHHHHHHHHHhCchhhhHHHHHHHHH
Q ss_pred HHH----HcCChhHHHHH
Q 012360 191 GCV----KAKQPEEALEL 204 (465)
Q Consensus 191 ~~~----~~g~~~~a~~~ 204 (465)
.+. +.+..++-..+
T Consensus 181 ~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 181 HCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHhhhhhHHHHHHhC
No 477
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=41.64 E-value=50 Score=24.32 Aligned_cols=45 Identities=7% Similarity=0.067 Sum_probs=28.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchh
Q 012360 54 TLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE 98 (465)
Q Consensus 54 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 98 (465)
.++..+...+.+-.|.++++.|.+.+...+..|.-..++.+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 456666666667778888888877766666665555555555444
No 478
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.29 E-value=3.4e+02 Score=26.32 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPN--EATFVSVLAACRHSGLITEGCQLFRRMGGV 347 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (465)
...++.-|.+.+++++|..++..|.=.- .+. -...+.+++.+.+..--++.+..++.+...
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~-~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNT-MGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccc-cHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 3456667777777888877777664221 111 123344445555555445555555655543
No 479
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.16 E-value=2.6e+02 Score=24.97 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CCcc---chHHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCch
Q 012360 359 CLVDLLSRAGLLYQAEEFIKIMPA-EDKF---ISYKALLSACITYSEFDLGKKVANNMMKLG-NQSHE 421 (465)
Q Consensus 359 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~ 421 (465)
.|..+-.+.|+..+|.+.++.+.. .|-. .....++.++....-+.+...++-+.-++. |.+..
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~ 347 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAA 347 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHH
Confidence 444444555666666666655432 2211 112345555555555555555555554444 44443
No 480
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.12 E-value=1.4e+02 Score=30.62 Aligned_cols=129 Identities=11% Similarity=-0.051 Sum_probs=67.9
Q ss_pred HHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhH
Q 012360 26 HFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT 105 (465)
Q Consensus 26 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 105 (465)
.....+|+++.|++.-..+. +..+|..|.....++|+.+-|...|++.+.. ..+--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHHH
Confidence 33445566666666555443 4467888888888888888888888776542 222223445566665555
Q ss_pred HHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 012360 106 VHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177 (465)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (465)
+....... .|... ......-.|+.++-.++++.-|..|- +|. .....|.-++|.++.++.
T Consensus 720 m~~iae~r---~D~~~---~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~ 779 (1202)
T KOG0292|consen 720 MMKIAEIR---NDATG---QFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEEL 779 (1202)
T ss_pred HHHHHHhh---hhhHH---HHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhh
Confidence 54444322 11111 11111224666666666666542221 111 112345556666666555
No 481
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=41.10 E-value=2.7e+02 Score=25.04 Aligned_cols=59 Identities=8% Similarity=-0.108 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCC-CchhHHHHHHHH
Q 012360 102 YGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRR-NIVSLNILINGY 161 (465)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 161 (465)
.-+.+++++++.+ +.+......++..+.+..+.+...+.++++ ...| +...|...+...
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 3445555555552 344445555666666666666666666665 1122 344454444433
No 482
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.90 E-value=4.5e+02 Score=27.55 Aligned_cols=245 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred hhHHHHHHHccCChHHHHHHhccCCCCC-------cccHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCCCchhhHHH--
Q 012360 21 GNSLIHFYGRMALFTDARVLFDKMPFRD-------VGSWNTLMSIYNDFSDS--GEVLILFKQLIFEGIVADKITLVI-- 89 (465)
Q Consensus 21 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~-- 89 (465)
|..|+..|...|..++|+++|......+ ...+..+++.+.+.+.. +-.++.-+........-....+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHH
Q 012360 90 ----------LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILIN 159 (465)
Q Consensus 90 ----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 159 (465)
.+-.+......+-+...++.+....-.++....+.++..|+..=+- ....+.-|..-...++...+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~---~~~~~~kg~e~~E~~~rekl~ 663 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLE---QASTDGKGEEAPETTVREKLL 663 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhh---ccCchhccccchhhhHHHHHH
Q ss_pred HHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc--chhhHhHH
Q 012360 160 GYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS--LSNLQYGR 237 (465)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~ 237 (465)
.+...-+.=....++.......-.-..+++-+ +.|+.++|+.++-..+. |...-......+.. .++.+.-.
T Consensus 664 ~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~--rl~khe~aL~Iyv~~L~-----d~~~A~~Yc~~~y~~~~~~~~~y~ 736 (877)
T KOG2063|consen 664 DFLESSDLYDPQLLLERLNGDELYEERAILLG--RLGKHEEALHIYVHELD-----DIDAAESYCLPQYESDKTNKEIYL 736 (877)
T ss_pred HHhhhhcccCcchhhhhccchhHHHHHHHHHh--hhhhHHHHHHHHHHHhc-----chhHHHHHHHHhccCCCcccHHHH
Q ss_pred HHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 012360 238 LVHRFILQN--NITQDAFVKTALIDMYSKCGSLEEALVTF 275 (465)
Q Consensus 238 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (465)
.++...... +....+...-.++.-+...=+...+.+.+
T Consensus 737 ~lL~~~l~~~~d~~~~~~~il~~l~~h~~r~d~~~~~~~L 776 (877)
T KOG2063|consen 737 TLLRIYLNPIHDYKSGPLYILNFLQKHADRLDLAQVLKLL 776 (877)
T ss_pred HHHHHHhcchhhccccchhhhhHHHhhhhhcCHHHHHHhC
No 483
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=40.84 E-value=4.5e+02 Score=27.60 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCH
Q 012360 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370 (465)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 370 (465)
|..++..-...+...|++..+.+++.++.+..+-.++...+..++..+...|--
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 344444444445556777777777777776556666666666666666665543
No 484
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.04 E-value=3.1e+02 Score=25.42 Aligned_cols=55 Identities=7% Similarity=0.033 Sum_probs=31.7
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhc--cchhhHhHHHHHHHHHHc
Q 012360 191 GCVKAKQPEEALELFKKMIDEGVTPDEE--VMVSVLSACS--SLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 191 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 246 (465)
.+...+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677777777777777765 444443 3333334433 234556677766665543
No 485
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.91 E-value=3.7e+02 Score=26.30 Aligned_cols=168 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHccCChHHHHHHhccCC------------------------CCCcccHHHH---HHHHHhcCChhHHHH
Q 012360 18 IYVGNSLIHFYGRMALFTDARVLFDKMP------------------------FRDVGSWNTL---MSIYNDFSDSGEVLI 70 (465)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------------~~~~~~~~~l---~~~~~~~~~~~~a~~ 70 (465)
+.+.-.+...+..+|+.+-|..+.+... ..|...|-+| +..+.+.|.+..|++
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E 363 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALE 363 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHH
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHhc-chhhhhhhhHHHHHHHHhC---CccchhhHHHHHHHHHhCCC---hHHHHHHHH
Q 012360 71 LFKQLIFEGIVADKITLVILFSACA-RLEKLHYGKTVHCYATKVG---LEYMLNMENALLLMYAKCKE---MDEALRLFD 143 (465)
Q Consensus 71 ~~~~m~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 143 (465)
.-+-+.+....-|+.....+|..|+ +.+++.-..++++.....+ .-|+..--.++...|.+... -+.|...+.
T Consensus 364 ~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~ 443 (665)
T KOG2422|consen 364 WCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALL 443 (665)
T ss_pred HHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHH
Q ss_pred hh---------------CCCCCchhHHHHHHHHHhcCChHHHHHHHHHh-hcCChHHH
Q 012360 144 EM---------------GSRRNIVSLNILINGYIDMELVDLAREVFDEI-VDKDIVLW 185 (465)
Q Consensus 144 ~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~ 185 (465)
+. .+.|+..+-+.-+.+......-..|+.++-.+ ...+..+|
T Consensus 444 qAl~~~P~vl~eLld~~~l~~da~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~~~vW 501 (665)
T KOG2422|consen 444 QALKHHPLVLSELLDELLLGDDALTKDLKFDGSSAENSELPALMLLVKLYANRNEEVW 501 (665)
T ss_pred HHHHhCcHHHHHHHHhccCCchhhhhhhcccccccccccchHHHHHHHHHHhhhhHhh
No 486
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=39.87 E-value=3.3e+02 Score=25.63 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=25.7
Q ss_pred HcCCCCCH--HHHHHHHHHhccchhhHhHHHHHHHHHHcCCCC
Q 012360 210 DEGVTPDE--EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250 (465)
Q Consensus 210 ~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 250 (465)
...++|.. -++...|..+.+.+++..|..+-+++++.+..+
T Consensus 291 hc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 291 HCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp CS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 33445443 244566777889999999999988888876433
No 487
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.75 E-value=3.3e+02 Score=25.61 Aligned_cols=119 Identities=15% Similarity=0.099 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHH---cCC-CCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 012360 199 EEALELFKKMID---EGV-TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274 (465)
Q Consensus 199 ~~a~~~~~~~~~---~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 274 (465)
++...+++.... .|+ ..+......++..+ .|+...+..+++.+...+...+......++....
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~----------- 220 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRA----------- 220 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhh-----------
Confidence 444445544432 133 45555555555543 6788888777777654322222222211111100
Q ss_pred HhcCCCCChhhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 012360 275 FYKTDCKDVVTWTTMIEGLAN---YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332 (465)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 332 (465)
.....+...+..++.++.+ ..+++.|..++.+|.+.|..|....-..++.++...|
T Consensus 221 --~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 221 --ARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred --hccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 0001122223334444444 4789999999999999998887665555555554444
No 488
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.08 E-value=2.7e+02 Score=24.55 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 012360 257 ALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336 (465)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 336 (465)
.++..+.+.++.....+.+..+. ....-...+..+...|++..|++++.+..+. .. ....|..+-..- .++++
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~---~~L~e 175 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLS---SQLQE 175 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHh---HHHHH
Confidence 34455555555555555554442 2333444566667778888888877776543 00 101111111111 11222
Q ss_pred HHHHHHHhhcC----CCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 012360 337 GCQLFRRMGGV----YRVQPTIEHFVCLVDLLSRAGLLYQAEEFI 377 (465)
Q Consensus 337 a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 377 (465)
.....+++.+. --..-|+..|..+..+|.-.|+...+.+-+
T Consensus 176 ~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 176 TLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22222221110 001356667778888887777766655433
No 489
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=38.97 E-value=3.1e+02 Score=25.17 Aligned_cols=57 Identities=12% Similarity=-0.009 Sum_probs=36.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-cchhhHhHHHHHHHHHH
Q 012360 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS-SLSNLQYGRLVHRFILQ 245 (465)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 245 (465)
|..+.+.|-+..|+++.+-+...+..-|.......|..|+ +.++++--.++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4456777888888888877777554445555555565553 56666666666665443
No 490
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.03 E-value=2.6e+02 Score=23.95 Aligned_cols=69 Identities=10% Similarity=0.011 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 424 (465)
.+..+..++...|++-++++...++.. +.++..|-.-.++.+..-+.++|..-|.++++++|.-..+..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 344555666777888888887777654 336667766677777777888899999999998887655443
No 491
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=37.65 E-value=1.5e+02 Score=22.05 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=43.7
Q ss_pred hHHHHHHHH--HhcCChHHHHHHHHHHHHhC---CCC---------chhHHHHHHHHhhcCChHHHHHHHHHHH-----H
Q 012360 388 SYKALLSAC--ITYSEFDLGKKVANNMMKLG---NQS---------HEAYVLLSNFYALEGHWTEVAEARRNMK-----E 448 (465)
Q Consensus 388 ~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~---p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~ 448 (465)
+|..|-.+- ...|-+++|..-++++.+.. |+. ..++..|..++...|++++++.--+... +
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 344444443 34677888888888888743 332 2267789999999999999765444332 2
Q ss_pred hcCCCCCCCeee
Q 012360 449 LQTRKKPGNSII 460 (465)
Q Consensus 449 ~~~~~~~~~~~~ 460 (465)
-.+..+.|.-||
T Consensus 89 GEL~qdeGklWI 100 (144)
T PF12968_consen 89 GELHQDEGKLWI 100 (144)
T ss_dssp --TTSTHHHHHH
T ss_pred cccccccchhHH
Confidence 334455555555
No 492
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=37.64 E-value=3.1e+02 Score=24.74 Aligned_cols=118 Identities=11% Similarity=0.075 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHhhcCCCCCCChh-hHHHHHHHHHhcCCHH
Q 012360 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRH------SGLITEGCQLFRRMGGVYRVQPTIE-HFVCLVDLLSRAGLLY 371 (465)
Q Consensus 299 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 371 (465)
.+++..++++....+ .|.+......|.++.. .-+|.....+|+.+.. ..|++. +.|.-+ +.....-++
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHH-HHHHhhhHH
Confidence 577888888887776 4888877777766532 2367777788887773 345433 334333 344555577
Q ss_pred HHHHHHHhCCCCCc---cch-HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 372 QAEEFIKIMPAEDK---FIS-YKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 372 ~A~~~~~~~~~~~~---~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.++.+.+.+...|. ... +..=...+.+.|+.++|...|++++.+.++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 78888888776542 222 333445667899999999999999998876654
No 493
>PF15469 Sec5: Exocyst complex component Sec5
Probab=37.51 E-value=2.2e+02 Score=22.93 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhc
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGG 346 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~ 346 (465)
.-+.-|.+.|+++.+...|.++..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 334555666777777777766654
No 494
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.43 E-value=3.4e+02 Score=25.19 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhc------CChHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 012360 153 SLNILINGYIDMELVDLAREVFDEIVD------KDIVLWRSMMHGCVKAKQPEEALELFKKMID 210 (465)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 210 (465)
.+..+...|..+|+++.|.+.|.+..+ ..+..|-.+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 355566777777777777777776422 1334455556666666777766666655544
No 495
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.85 E-value=3e+02 Score=24.33 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=27.8
Q ss_pred HHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 012360 159 NGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210 (465)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 210 (465)
....+.++.....+.++.+. ....-...+..+...|++..|++++.+..+
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444444441 233344456666777888888887776654
No 496
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=36.80 E-value=1.6e+02 Score=22.09 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=29.5
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
.+...-+.+.|.++|+++++..|+.......++..+-...
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~~ 124 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSPE 124 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHHS
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcHH
Confidence 3444557799999999999999999998888888776543
No 497
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=36.74 E-value=3.7e+02 Score=25.36 Aligned_cols=62 Identities=8% Similarity=-0.070 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
...|+.-|...|+..+|.++++++---.-++..++..++.+..+.|+-..-+.+++..-+.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 45677888889999999888775422222344467777777777777666666666554443
No 498
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.37 E-value=1.4e+02 Score=29.58 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 012360 195 AKQPEEALELFKKMIDEGVTPDEEVMVSV 223 (465)
Q Consensus 195 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 223 (465)
.|++.+|.+.+-.+.+.+..|...-...+
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp -----------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 35666666666666555555554444333
No 499
>PRK09462 fur ferric uptake regulator; Provisional
Probab=36.19 E-value=2e+02 Score=22.16 Aligned_cols=61 Identities=5% Similarity=0.066 Sum_probs=35.8
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcc-chhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 012360 207 KMIDEGVTPDEEVMVSVLSACSS-LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 207 ~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
.+.+.|++++..-. .++..+.. .+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455666554433 33333333 345667888888888777666666655566666665543
No 500
>PRK14700 recombination factor protein RarA; Provisional
Probab=36.17 E-value=3.1e+02 Score=24.31 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchh-----hHhHHHHHHHHHHcCC
Q 012360 181 DIVLWRSMMHGCVK---AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN-----LQYGRLVHRFILQNNI 248 (465)
Q Consensus 181 ~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 248 (465)
+...+--+++++.+ -.+.+.|+-++-.|++.|-.|....-..++.++..-|. ...|...++....-|.
T Consensus 122 ~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 33444445777655 46899999999999999988876666666666655552 3344444555555554
Done!