Query 012360
Match_columns 465
No_of_seqs 639 out of 2303
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 07:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.2E-41 2.8E-45 325.9 36.4 429 15-450 81-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.7E-39 5.9E-44 316.6 31.2 425 2-432 103-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-29 4.2E-34 233.4 41.4 372 56-435 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.4E-28 8.3E-33 224.7 38.2 352 91-449 6-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.9E-29 1E-33 234.5 22.7 184 183-367 27-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 7.6E-29 2.6E-33 231.8 22.1 182 51-263 28-221 (501)
7 2gw1_A Mitochondrial precursor 100.0 3.9E-26 1.3E-30 218.1 33.0 262 183-449 187-478 (514)
8 2gw1_A Mitochondrial precursor 100.0 7.1E-26 2.4E-30 216.3 30.0 403 18-426 6-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 7.7E-25 2.6E-29 210.4 29.7 422 17-449 24-491 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 6.2E-24 2.1E-28 199.4 33.0 320 118-445 25-405 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1E-23 3.6E-28 197.8 33.7 377 36-439 10-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 3.6E-22 1.2E-26 191.7 31.3 414 1-424 43-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1E-20 3.5E-25 171.6 31.3 305 120-432 4-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.8E-20 9.5E-25 168.8 32.4 297 150-450 2-336 (359)
15 2xm6_A Protein corresponding t 99.9 4.5E-19 1.5E-23 167.8 37.8 376 38-432 27-452 (490)
16 3hym_B Cell division cycle pro 99.9 8.9E-20 3E-24 163.5 27.7 285 116-437 19-322 (330)
17 2xm6_A Protein corresponding t 99.9 4.1E-18 1.4E-22 161.2 40.0 363 68-451 26-434 (490)
18 3hym_B Cell division cycle pro 99.9 1.5E-19 5.2E-24 161.9 27.0 264 181-449 21-299 (330)
19 2ooe_A Cleavage stimulation fa 99.9 8E-18 2.7E-22 160.9 38.7 417 6-449 2-492 (530)
20 1fch_A Peroxisomal targeting s 99.8 7.6E-20 2.6E-24 166.7 21.3 299 128-446 34-356 (368)
21 1b89_A Protein (clathrin heavy 99.8 2.7E-19 9.2E-24 159.7 23.1 359 16-409 30-411 (449)
22 3mkr_A Coatomer subunit epsilo 99.8 2.7E-18 9.2E-23 150.1 27.3 269 159-441 7-286 (291)
23 1b89_A Protein (clathrin heavy 99.8 3.2E-19 1.1E-23 159.2 21.6 373 29-444 14-412 (449)
24 2ooe_A Cleavage stimulation fa 99.8 5.1E-17 1.7E-21 155.3 36.4 373 48-450 12-455 (530)
25 1xi4_A Clathrin heavy chain; a 99.8 8.2E-17 2.8E-21 160.1 38.0 377 17-441 984-1376(1630)
26 4eqf_A PEX5-related protein; a 99.8 4.6E-19 1.6E-23 161.3 19.5 271 150-445 64-352 (365)
27 1fch_A Peroxisomal targeting s 99.8 3.1E-18 1.1E-22 155.9 24.5 247 97-345 38-312 (368)
28 4g1t_A Interferon-induced prot 99.8 3.1E-17 1.1E-21 154.7 31.5 388 48-460 50-470 (472)
29 3cv0_A Peroxisome targeting si 99.8 1.9E-18 6.5E-23 154.5 20.4 274 151-447 21-313 (327)
30 3mkr_A Coatomer subunit epsilo 99.8 2.6E-18 8.8E-23 150.2 19.4 247 189-450 6-265 (291)
31 1xi4_A Clathrin heavy chain; a 99.8 8.4E-16 2.9E-20 153.0 37.2 348 53-444 989-1340(1630)
32 4eqf_A PEX5-related protein; a 99.8 7.7E-18 2.6E-22 153.2 20.6 257 119-379 65-352 (365)
33 4g1t_A Interferon-induced prot 99.8 2.5E-16 8.4E-21 148.5 30.0 383 15-427 48-471 (472)
34 3cv0_A Peroxisome targeting si 99.8 1.7E-16 6E-21 141.7 27.1 257 118-380 20-312 (327)
35 3e4b_A ALGK; tetratricopeptide 99.8 1.9E-16 6.6E-21 147.5 24.7 376 56-448 10-420 (452)
36 3uq3_A Heat shock protein STI1 99.7 2E-16 6.7E-21 136.2 19.2 228 182-449 5-236 (258)
37 3uq3_A Heat shock protein STI1 99.7 1.7E-16 5.7E-21 136.6 18.5 235 151-429 5-256 (258)
38 2pl2_A Hypothetical conserved 99.7 1.9E-16 6.5E-21 132.3 17.5 195 249-447 2-212 (217)
39 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-18 5.7E-23 167.0 5.3 145 17-165 126-286 (1134)
40 1xnf_A Lipoprotein NLPI; TPR, 99.7 1E-15 3.4E-20 133.2 19.4 240 195-443 18-269 (275)
41 3spa_A Mtrpol, DNA-directed RN 99.7 3.6E-17 1.2E-21 157.8 9.6 147 151-297 127-286 (1134)
42 3u4t_A TPR repeat-containing p 99.7 3.2E-15 1.1E-19 129.8 20.2 245 154-434 6-269 (272)
43 1ouv_A Conserved hypothetical 99.7 3.1E-14 1.1E-18 123.6 25.7 226 181-419 5-255 (273)
44 1ouv_A Conserved hypothetical 99.7 3.6E-14 1.2E-18 123.2 25.6 224 216-451 5-253 (273)
45 3e4b_A ALGK; tetratricopeptide 99.7 3.5E-15 1.2E-19 139.0 19.4 343 90-451 9-389 (452)
46 2vq2_A PILW, putative fimbrial 99.7 2.5E-14 8.6E-19 120.1 21.4 196 252-449 8-211 (225)
47 3u4t_A TPR repeat-containing p 99.7 1.8E-14 6.2E-19 125.0 21.1 224 223-450 9-251 (272)
48 2q7f_A YRRB protein; TPR, prot 99.6 3.7E-15 1.3E-19 127.0 16.2 203 223-429 29-236 (243)
49 2ho1_A Type 4 fimbrial biogene 99.6 2.1E-14 7.1E-19 123.1 20.9 193 255-449 40-238 (252)
50 2h6f_A Protein farnesyltransfe 99.6 1.7E-14 5.8E-19 130.2 21.0 246 182-433 97-366 (382)
51 2ho1_A Type 4 fimbrial biogene 99.6 3.5E-14 1.2E-18 121.6 21.9 208 182-424 37-247 (252)
52 2q7f_A YRRB protein; TPR, prot 99.6 6.2E-15 2.1E-19 125.5 16.1 198 250-450 21-223 (243)
53 2pl2_A Hypothetical conserved 99.6 3.1E-14 1.1E-18 118.8 18.6 194 149-379 3-210 (217)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.8E-14 9.7E-19 123.9 19.0 236 165-409 19-269 (275)
55 4a1s_A PINS, partner of inscut 99.6 5.4E-15 1.8E-19 136.7 15.1 164 285-448 168-371 (411)
56 2vq2_A PILW, putative fimbrial 99.6 1.1E-13 3.9E-18 116.1 21.8 209 182-425 8-221 (225)
57 3sf4_A G-protein-signaling mod 99.6 1.1E-14 3.8E-19 134.1 16.8 287 151-437 9-364 (406)
58 3vtx_A MAMA; tetratricopeptide 99.6 6E-14 2.1E-18 113.9 18.7 164 282-449 4-170 (184)
59 2h6f_A Protein farnesyltransfe 99.6 4.3E-14 1.5E-18 127.6 18.7 224 217-446 97-344 (382)
60 4e6h_A MRNA 3'-END-processing 99.6 5.8E-12 2E-16 121.3 34.4 419 6-430 55-584 (679)
61 3ro2_A PINS homolog, G-protein 99.6 1.3E-14 4.4E-19 130.0 14.8 261 188-449 11-332 (338)
62 3sf4_A G-protein-signaling mod 99.6 6.3E-14 2.2E-18 129.1 19.3 295 86-405 11-366 (406)
63 4abn_A Tetratricopeptide repea 99.6 2E-14 7E-19 134.7 15.0 209 233-446 84-318 (474)
64 4e6h_A MRNA 3'-END-processing 99.6 1.8E-11 6.1E-16 118.0 33.0 403 46-451 63-572 (679)
65 3ulq_A Response regulator aspa 99.5 1.9E-13 6.4E-18 125.0 17.6 236 188-449 109-368 (383)
66 4a1s_A PINS, partner of inscut 99.5 2E-13 6.7E-18 126.1 17.5 269 122-418 51-375 (411)
67 3ulq_A Response regulator aspa 99.5 1.3E-12 4.3E-17 119.5 21.9 296 94-416 22-369 (383)
68 3ro2_A PINS homolog, G-protein 99.5 3.7E-13 1.3E-17 120.3 17.6 237 154-418 46-335 (338)
69 3vtx_A MAMA; tetratricopeptide 99.5 4.4E-13 1.5E-17 108.7 15.4 168 251-421 4-176 (184)
70 3nf1_A KLC 1, kinesin light ch 99.5 7.7E-14 2.6E-18 123.5 11.5 243 182-449 27-307 (311)
71 2ond_A Cleavage stimulation fa 99.5 6.4E-12 2.2E-16 110.9 22.6 185 234-421 81-276 (308)
72 3as5_A MAMA; tetratricopeptide 99.5 6.5E-13 2.2E-17 107.6 15.0 161 288-451 13-175 (186)
73 2ond_A Cleavage stimulation fa 99.5 5.3E-12 1.8E-16 111.4 21.6 213 234-451 33-272 (308)
74 4gyw_A UDP-N-acetylglucosamine 99.5 1.1E-12 3.8E-17 127.8 17.4 163 282-448 8-173 (723)
75 3q15_A PSP28, response regulat 99.5 3.1E-11 1E-15 110.0 25.5 157 188-345 107-288 (378)
76 1hz4_A MALT regulatory protein 99.5 6E-11 2.1E-15 107.9 27.0 159 288-446 140-319 (373)
77 4i17_A Hypothetical protein; T 99.4 4.3E-12 1.5E-16 106.8 15.6 189 251-450 6-210 (228)
78 3q15_A PSP28, response regulat 99.4 2.3E-11 8E-16 110.8 21.2 191 153-346 143-364 (378)
79 3nf1_A KLC 1, kinesin light ch 99.4 2.5E-12 8.5E-17 113.7 14.0 206 182-418 69-310 (311)
80 4abn_A Tetratricopeptide repea 99.4 1.5E-11 5E-16 115.3 19.8 189 118-307 101-316 (474)
81 4i17_A Hypothetical protein; T 99.4 1.6E-11 5.5E-16 103.2 18.3 204 215-430 5-224 (228)
82 3as5_A MAMA; tetratricopeptide 99.4 1.8E-11 6.3E-16 99.0 17.9 167 252-421 8-179 (186)
83 3mv2_B Coatomer subunit epsilo 99.4 1.6E-10 5.5E-15 99.0 20.7 238 162-421 24-288 (310)
84 1hz4_A MALT regulatory protein 99.3 2.3E-09 7.7E-14 97.4 29.7 267 54-345 19-320 (373)
85 1qqe_A Vesicular transport pro 99.3 1.5E-11 5.1E-16 107.6 13.0 186 261-446 46-266 (292)
86 3edt_B KLC 2, kinesin light ch 99.3 1.7E-11 5.7E-16 106.6 10.3 164 285-448 87-280 (283)
87 3qky_A Outer membrane assembly 99.3 1.9E-10 6.4E-15 98.9 16.5 182 251-449 14-224 (261)
88 4gyw_A UDP-N-acetylglucosamine 99.3 5.7E-11 2E-15 115.9 14.4 163 251-417 8-176 (723)
89 2yhc_A BAMD, UPF0169 lipoprote 99.3 6.5E-10 2.2E-14 93.0 18.9 182 252-452 4-216 (225)
90 3mv2_B Coatomer subunit epsilo 99.2 6.9E-10 2.4E-14 95.1 19.0 239 190-450 21-283 (310)
91 2fo7_A Synthetic consensus TPR 99.2 1.7E-10 5.9E-15 87.7 14.0 128 321-450 4-133 (136)
92 4ga2_A E3 SUMO-protein ligase 99.2 1.9E-11 6.5E-16 95.1 7.6 142 290-435 4-149 (150)
93 3qky_A Outer membrane assembly 99.2 2.9E-10 9.8E-15 97.7 15.5 202 215-438 13-250 (261)
94 1qqe_A Vesicular transport pro 99.2 1.6E-10 5.6E-15 100.9 13.9 221 166-423 32-277 (292)
95 3edt_B KLC 2, kinesin light ch 99.2 3.7E-10 1.3E-14 98.0 15.8 207 182-415 43-281 (283)
96 2pzi_A Probable serine/threoni 99.2 7.8E-11 2.7E-15 115.4 11.0 168 263-435 402-583 (681)
97 3qou_A Protein YBBN; thioredox 99.2 7.6E-10 2.6E-14 96.3 15.7 170 274-448 108-283 (287)
98 2fo7_A Synthetic consensus TPR 99.2 9.2E-10 3.1E-14 83.6 14.3 132 285-419 3-136 (136)
99 3rjv_A Putative SEL1 repeat pr 99.2 1.9E-09 6.4E-14 89.2 16.9 160 282-450 17-198 (212)
100 4ga2_A E3 SUMO-protein ligase 99.1 8.8E-11 3E-15 91.3 7.8 124 324-449 3-129 (150)
101 2uy1_A Cleavage stimulation fa 99.1 4.3E-07 1.5E-11 85.0 32.9 364 18-414 15-412 (493)
102 2vsy_A XCC0866; transferase, g 99.1 1.1E-09 3.8E-14 105.4 15.9 159 265-427 2-169 (568)
103 2r5s_A Uncharacterized protein 99.1 5.4E-10 1.8E-14 89.5 11.5 159 285-448 8-172 (176)
104 2pzi_A Probable serine/threoni 99.1 1.1E-09 3.7E-14 107.4 13.4 151 294-449 402-563 (681)
105 3gyz_A Chaperone protein IPGC; 99.1 6.4E-10 2.2E-14 85.9 9.2 98 353-450 35-134 (151)
106 4gco_A Protein STI-1; structur 99.1 1.5E-09 5.1E-14 81.3 10.8 109 319-429 14-124 (126)
107 3urz_A Uncharacterized protein 99.0 3E-09 1E-13 87.7 13.4 131 286-420 57-191 (208)
108 3rjv_A Putative SEL1 repeat pr 99.0 1.2E-08 4.2E-13 84.3 17.1 175 235-419 4-201 (212)
109 3u3w_A Transcriptional activat 99.0 4.3E-08 1.5E-12 85.6 21.3 161 288-448 80-265 (293)
110 2ifu_A Gamma-SNAP; membrane fu 99.0 2.6E-09 8.7E-14 94.1 13.2 178 260-441 44-253 (307)
111 2vsy_A XCC0866; transferase, g 99.0 3.7E-09 1.3E-13 101.7 15.5 148 297-448 3-156 (568)
112 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.2E-08 4.1E-13 85.3 16.2 184 217-421 4-219 (225)
113 1hh8_A P67PHOX, NCF-2, neutrop 99.0 6.8E-09 2.3E-13 85.9 14.0 130 285-420 8-155 (213)
114 2ifu_A Gamma-SNAP; membrane fu 99.0 3.1E-09 1E-13 93.6 12.2 196 229-447 3-222 (307)
115 2uy1_A Cleavage stimulation fa 99.0 2.8E-07 9.6E-12 86.3 25.9 354 61-448 6-412 (493)
116 4gco_A Protein STI-1; structur 99.0 4.3E-09 1.5E-13 78.8 10.7 97 354-450 13-111 (126)
117 2qfc_A PLCR protein; TPR, HTH, 99.0 2.2E-08 7.4E-13 87.5 16.7 163 285-447 77-264 (293)
118 2vgx_A Chaperone SYCD; alterna 99.0 1.5E-09 5.2E-14 83.9 8.2 100 320-421 23-124 (148)
119 1a17_A Serine/threonine protei 99.0 9.3E-09 3.2E-13 81.2 12.7 128 319-448 14-145 (166)
120 3urz_A Uncharacterized protein 99.0 2.8E-08 9.7E-13 81.8 15.8 119 258-381 60-184 (208)
121 3dra_A Protein farnesyltransfe 99.0 5.2E-07 1.8E-11 78.2 24.2 225 198-428 49-301 (306)
122 2r5s_A Uncharacterized protein 99.0 1.2E-08 4.2E-13 81.6 13.1 156 255-414 9-172 (176)
123 3dra_A Protein farnesyltransfe 98.9 1.7E-07 5.9E-12 81.2 20.0 216 229-448 45-286 (306)
124 3qou_A Protein YBBN; thioredox 98.9 6.9E-08 2.4E-12 83.9 17.7 159 218-379 118-280 (287)
125 2lni_A Stress-induced-phosphop 98.9 1.4E-08 4.8E-13 76.7 11.4 116 318-435 16-133 (133)
126 2vyi_A SGTA protein; chaperone 98.9 1.4E-08 4.8E-13 76.4 11.3 118 318-437 12-131 (131)
127 1na0_A Designed protein CTPR3; 98.9 2.2E-08 7.4E-13 74.6 12.0 115 318-434 9-125 (125)
128 1p5q_A FKBP52, FK506-binding p 98.9 1.1E-08 3.6E-13 91.2 11.5 126 319-447 148-292 (336)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.9 6.5E-08 2.2E-12 79.9 15.6 126 254-382 8-149 (213)
130 2e2e_A Formate-dependent nitri 98.9 6.3E-09 2.2E-13 83.3 9.0 126 293-421 20-150 (177)
131 2c2l_A CHIP, carboxy terminus 98.9 6.5E-09 2.2E-13 90.1 9.1 189 252-448 4-198 (281)
132 2xcb_A PCRH, regulatory protei 98.9 9E-09 3.1E-13 79.0 8.8 99 321-421 21-121 (142)
133 4f3v_A ESX-1 secretion system 98.8 1.3E-07 4.4E-12 80.0 15.6 137 287-428 106-249 (282)
134 3upv_A Heat shock protein STI1 98.8 1.9E-08 6.5E-13 75.4 9.5 92 357-448 7-100 (126)
135 3gyz_A Chaperone protein IPGC; 98.8 5.1E-08 1.8E-12 75.2 11.8 104 315-420 32-138 (151)
136 2kck_A TPR repeat; tetratricop 98.8 3E-08 1E-12 72.2 10.1 100 353-452 5-109 (112)
137 3u3w_A Transcriptional activat 98.8 5.6E-07 1.9E-11 78.4 19.6 202 205-415 34-266 (293)
138 2vgx_A Chaperone SYCD; alterna 98.8 2.2E-08 7.4E-13 77.4 8.8 109 339-450 8-119 (148)
139 1hxi_A PEX5, peroxisome target 98.8 2.6E-08 8.8E-13 73.9 8.2 95 355-449 18-114 (121)
140 4f3v_A ESX-1 secretion system 98.8 2.2E-07 7.6E-12 78.6 14.5 183 264-451 18-239 (282)
141 3sz7_A HSC70 cochaperone (SGT) 98.7 5.3E-08 1.8E-12 76.8 10.2 111 317-429 10-122 (164)
142 3q49_B STIP1 homology and U bo 98.7 7.6E-08 2.6E-12 73.2 10.7 94 354-447 9-104 (137)
143 4gcn_A Protein STI-1; structur 98.7 3.5E-08 1.2E-12 73.9 8.5 93 356-448 10-111 (127)
144 2fbn_A 70 kDa peptidylprolyl i 98.7 6.8E-08 2.3E-12 78.8 10.9 95 355-449 89-186 (198)
145 2qfc_A PLCR protein; TPR, HTH, 98.7 9.1E-07 3.1E-11 77.1 18.7 164 253-416 76-267 (293)
146 2xcb_A PCRH, regulatory protei 98.7 6.9E-08 2.4E-12 74.0 10.0 98 353-450 17-116 (142)
147 1elw_A TPR1-domain of HOP; HOP 98.7 1.3E-07 4.5E-12 69.5 11.0 109 319-429 5-115 (118)
148 3upv_A Heat shock protein STI1 98.7 9.1E-08 3.1E-12 71.6 10.0 111 319-431 5-123 (126)
149 2e2e_A Formate-dependent nitri 98.7 9.6E-08 3.3E-12 76.3 10.4 121 329-451 21-146 (177)
150 3sz7_A HSC70 cochaperone (SGT) 98.7 1.3E-07 4.3E-12 74.6 10.8 96 283-381 11-106 (164)
151 2lni_A Stress-induced-phosphop 98.7 1.3E-07 4.4E-12 71.3 10.5 100 351-450 13-114 (133)
152 2dba_A Smooth muscle cell asso 98.7 3.3E-07 1.1E-11 70.5 12.9 112 317-431 27-144 (148)
153 3gw4_A Uncharacterized protein 98.7 1.5E-07 5E-12 77.1 11.3 129 319-447 27-174 (203)
154 1elw_A TPR1-domain of HOP; HOP 98.7 1.6E-07 5.3E-12 69.0 10.2 97 353-449 3-101 (118)
155 1na0_A Designed protein CTPR3; 98.7 2.1E-07 7.3E-12 69.1 10.9 97 354-450 9-107 (125)
156 1a17_A Serine/threonine protei 98.6 6E-07 2E-11 70.6 13.1 129 284-415 14-146 (166)
157 3gw4_A Uncharacterized protein 98.6 2.2E-07 7.6E-12 75.9 10.8 153 264-416 4-177 (203)
158 3q49_B STIP1 homology and U bo 98.6 2E-07 6.8E-12 70.8 9.7 112 317-430 8-126 (137)
159 2dba_A Smooth muscle cell asso 98.6 4.5E-07 1.5E-11 69.7 11.6 99 352-450 26-129 (148)
160 2xev_A YBGF; tetratricopeptide 98.6 3.9E-07 1.3E-11 68.3 10.9 99 323-423 7-113 (129)
161 2vyi_A SGTA protein; chaperone 98.6 2.4E-07 8.2E-12 69.5 9.3 99 352-450 10-110 (131)
162 3q7a_A Farnesyltransferase alp 98.6 3E-05 1E-09 67.9 23.7 228 196-428 68-345 (349)
163 3k9i_A BH0479 protein; putativ 98.6 8.4E-08 2.9E-12 70.7 6.2 90 331-421 3-96 (117)
164 2hr2_A Hypothetical protein; a 98.6 4E-07 1.4E-11 69.5 9.4 107 320-449 13-131 (159)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 3.4E-07 1.2E-11 85.2 10.2 125 319-446 269-412 (457)
166 1elr_A TPR2A-domain of HOP; HO 98.5 5.3E-07 1.8E-11 67.5 9.1 109 320-431 6-123 (131)
167 1wao_1 Serine/threonine protei 98.5 1.6E-07 5.5E-12 87.7 7.3 119 324-444 12-134 (477)
168 1elr_A TPR2A-domain of HOP; HO 98.5 3.9E-07 1.3E-11 68.3 8.2 97 354-450 4-109 (131)
169 2kck_A TPR repeat; tetratricop 98.5 4.2E-07 1.5E-11 65.9 8.0 100 319-420 7-111 (112)
170 3rkv_A Putative peptidylprolyl 98.5 5.1E-07 1.8E-11 70.9 8.9 103 318-420 11-131 (162)
171 3dss_A Geranylgeranyl transfer 98.5 7.1E-05 2.4E-09 65.2 23.0 169 193-367 40-240 (331)
172 4gcn_A Protein STI-1; structur 98.5 1.2E-06 4.2E-11 65.4 10.5 97 320-418 10-115 (127)
173 3q7a_A Farnesyltransferase alp 98.5 0.00042 1.4E-08 60.7 27.7 66 200-267 185-257 (349)
174 2xev_A YBGF; tetratricopeptide 98.5 1.9E-06 6.4E-11 64.5 11.5 93 357-449 5-105 (129)
175 1p5q_A FKBP52, FK506-binding p 98.5 1.3E-06 4.4E-11 77.7 12.0 127 284-414 148-293 (336)
176 1hxi_A PEX5, peroxisome target 98.5 4.8E-07 1.6E-11 66.9 7.8 98 321-420 20-119 (121)
177 2fbn_A 70 kDa peptidylprolyl i 98.5 1.4E-07 4.6E-12 77.0 5.0 95 356-450 40-152 (198)
178 2if4_A ATFKBP42; FKBP-like, al 98.5 1.6E-07 5.5E-12 83.6 5.8 147 284-450 180-329 (338)
179 3rkv_A Putative peptidylprolyl 98.4 4.4E-07 1.5E-11 71.2 7.6 60 388-447 65-124 (162)
180 3k9i_A BH0479 protein; putativ 98.4 2.1E-07 7.3E-12 68.5 5.3 84 366-449 2-90 (117)
181 3ro3_A PINS homolog, G-protein 98.4 1.2E-06 4.2E-11 68.3 10.1 130 320-449 11-158 (164)
182 2c2l_A CHIP, carboxy terminus 98.4 8.6E-07 2.9E-11 76.6 9.8 112 317-430 3-116 (281)
183 1ihg_A Cyclophilin 40; ppiase 98.4 1E-06 3.5E-11 79.3 10.4 89 353-441 272-362 (370)
184 3dss_A Geranylgeranyl transfer 98.4 5.3E-05 1.8E-09 66.0 20.6 217 230-450 42-305 (331)
185 4b4t_Q 26S proteasome regulato 98.4 4.9E-06 1.7E-10 77.0 14.9 163 286-448 58-244 (434)
186 2hr2_A Hypothetical protein; a 98.4 4.8E-07 1.6E-11 69.0 6.5 111 285-426 13-142 (159)
187 1dce_A Protein (RAB geranylger 98.3 3.7E-05 1.3E-09 73.2 18.2 168 268-438 45-244 (567)
188 3ma5_A Tetratricopeptide repea 98.3 3.4E-06 1.2E-10 59.8 8.5 64 385-448 6-69 (100)
189 2if4_A ATFKBP42; FKBP-like, al 98.3 2.2E-06 7.6E-11 76.2 9.3 153 252-421 179-334 (338)
190 3n71_A Histone lysine methyltr 98.3 3.2E-06 1.1E-10 78.4 10.5 125 327-451 318-466 (490)
191 2l6j_A TPR repeat-containing p 98.3 2E-07 6.9E-12 67.7 1.9 93 353-445 3-103 (111)
192 3ro3_A PINS homolog, G-protein 98.3 3.8E-06 1.3E-10 65.5 9.5 132 285-416 11-159 (164)
193 1wao_1 Serine/threonine protei 98.2 4E-06 1.4E-10 78.3 10.0 115 260-378 14-134 (477)
194 4b4t_Q 26S proteasome regulato 98.2 7.9E-05 2.7E-09 68.7 18.3 93 153-245 137-244 (434)
195 1na3_A Designed protein CTPR2; 98.2 5.3E-06 1.8E-10 57.5 7.7 81 354-434 9-91 (91)
196 2kat_A Uncharacterized protein 98.2 4.7E-06 1.6E-10 60.9 7.3 80 336-417 3-84 (115)
197 1ihg_A Cyclophilin 40; ppiase 98.1 9.2E-06 3.2E-10 73.0 9.3 114 319-450 224-337 (370)
198 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.2E-05 4.1E-10 74.7 10.3 116 332-449 248-380 (457)
199 1zu2_A Mitochondrial import re 98.1 2.2E-06 7.4E-11 65.3 4.3 48 402-449 62-120 (158)
200 1klx_A Cysteine rich protein B 98.0 3.7E-05 1.3E-09 58.1 10.1 110 298-416 10-127 (138)
201 3bee_A Putative YFRE protein; 98.0 3E-05 1E-09 53.7 8.6 72 384-456 4-78 (93)
202 1klx_A Cysteine rich protein B 98.0 8.2E-05 2.8E-09 56.2 10.5 113 331-451 8-128 (138)
203 3lvg_A Clathrin heavy chain 1; 97.9 3.8E-07 1.3E-11 81.1 -2.9 261 17-303 53-324 (624)
204 2l6j_A TPR repeat-containing p 97.9 3.1E-05 1.1E-09 55.8 7.8 66 385-450 3-68 (111)
205 2kat_A Uncharacterized protein 97.9 2.3E-05 8E-10 57.1 6.7 64 385-448 18-81 (115)
206 1na3_A Designed protein CTPR2; 97.9 6.7E-05 2.3E-09 51.7 8.1 66 385-450 8-73 (91)
207 1zu2_A Mitochondrial import re 97.9 1.8E-05 6E-10 60.3 5.2 50 372-421 64-126 (158)
208 1dce_A Protein (RAB geranylger 97.8 0.00025 8.7E-09 67.4 14.0 149 297-449 43-221 (567)
209 2kc7_A BFR218_protein; tetratr 97.8 3.5E-05 1.2E-09 54.3 5.4 80 360-447 6-88 (99)
210 3n71_A Histone lysine methyltr 97.7 0.00022 7.5E-09 66.2 10.7 118 128-245 318-463 (490)
211 2kc7_A BFR218_protein; tetratr 97.6 0.00022 7.6E-09 50.0 8.1 61 391-451 5-66 (99)
212 3ma5_A Tetratricopeptide repea 97.6 0.00015 5.1E-09 51.1 6.8 65 353-417 6-72 (100)
213 3qww_A SET and MYND domain-con 97.6 0.0002 6.7E-09 65.4 9.0 82 367-448 311-410 (433)
214 3qwp_A SET and MYND domain-con 97.6 0.00037 1.3E-08 63.7 10.0 88 361-448 294-399 (429)
215 3ly7_A Transcriptional activat 97.5 0.0023 7.9E-08 56.0 14.4 139 281-421 192-345 (372)
216 3qww_A SET and MYND domain-con 97.3 0.00093 3.2E-08 60.9 9.7 93 330-422 310-423 (433)
217 3qwp_A SET and MYND domain-con 97.3 0.0016 5.6E-08 59.4 11.3 99 325-423 294-413 (429)
218 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0017 5.7E-08 46.0 7.8 73 354-426 5-86 (104)
219 3u64_A Protein TP_0956; tetrat 97.1 0.0017 5.7E-08 54.5 8.3 87 371-457 180-277 (301)
220 3bee_A Putative YFRE protein; 97.1 0.0023 7.9E-08 44.0 7.6 71 351-421 3-78 (93)
221 3ly7_A Transcriptional activat 97.1 0.013 4.3E-07 51.4 13.8 72 281-357 275-346 (372)
222 1qsa_A Protein (soluble lytic 97.1 0.17 5.9E-06 48.2 22.6 114 297-414 228-347 (618)
223 1pc2_A Mitochondria fission pr 97.0 0.0014 4.9E-08 49.2 5.8 88 332-421 12-106 (152)
224 3mkq_A Coatomer beta'-subunit; 96.9 0.17 5.7E-06 50.7 21.9 127 123-275 633-759 (814)
225 3mkq_A Coatomer beta'-subunit; 96.7 0.073 2.5E-06 53.3 17.9 99 27-145 608-707 (814)
226 1pc2_A Mitochondria fission pr 96.7 0.0072 2.5E-07 45.4 7.6 78 301-381 16-98 (152)
227 3mkq_B Coatomer subunit alpha; 96.6 0.035 1.2E-06 42.9 11.3 105 25-146 12-116 (177)
228 2v5f_A Prolyl 4-hydroxylase su 96.6 0.0092 3.2E-07 42.1 7.7 62 388-449 7-75 (104)
229 4ady_A RPN2, 26S proteasome re 96.6 0.42 1.5E-05 47.5 21.1 25 87-111 233-257 (963)
230 3mkq_B Coatomer subunit alpha; 96.2 0.31 1.1E-05 37.6 15.3 100 161-277 15-114 (177)
231 3lvg_A Clathrin heavy chain 1; 96.1 0.00084 2.9E-08 60.2 -0.2 234 16-272 81-324 (624)
232 1wy6_A Hypothetical protein ST 96.0 0.27 9.4E-06 35.6 16.1 141 293-452 17-157 (172)
233 3u64_A Protein TP_0956; tetrat 95.9 0.53 1.8E-05 39.7 15.6 90 167-256 179-281 (301)
234 4h7y_A Dual specificity protei 95.8 0.074 2.5E-06 39.4 8.8 111 317-429 12-137 (161)
235 1nzn_A CGI-135 protein, fissio 95.7 0.1 3.5E-06 37.6 9.3 87 333-421 16-109 (126)
236 4h7y_A Dual specificity protei 95.7 0.057 1.9E-06 40.0 8.0 102 351-452 10-126 (161)
237 1nzn_A CGI-135 protein, fissio 95.4 0.029 1E-06 40.5 5.5 84 367-450 14-104 (126)
238 4gns_B Protein CSD3, chitin bi 95.3 0.09 3.1E-06 51.1 10.3 55 393-447 344-398 (754)
239 2ff4_A Probable regulatory pro 95.3 0.057 1.9E-06 48.6 8.4 68 389-456 174-246 (388)
240 4b4t_P 26S proteasome regulato 95.2 1.9 6.4E-05 39.5 19.1 246 32-281 30-324 (445)
241 3lpz_A GET4 (YOR164C homolog); 95.1 1.5 5.2E-05 37.8 18.7 167 20-209 37-214 (336)
242 1wy6_A Hypothetical protein ST 94.9 0.74 2.5E-05 33.4 12.0 139 96-249 19-157 (172)
243 1y8m_A FIS1; mitochondria, unk 94.2 0.52 1.8E-05 34.7 9.3 71 351-421 36-112 (144)
244 2wpv_A GET4, UPF0363 protein Y 94.2 2.4 8.3E-05 36.3 17.4 26 118-143 133-158 (312)
245 4ady_A RPN2, 26S proteasome re 93.8 6 0.00021 39.6 28.5 119 260-382 498-622 (963)
246 3ffl_A Anaphase-promoting comp 93.3 0.36 1.2E-05 36.6 7.4 116 320-447 22-149 (167)
247 3ffl_A Anaphase-promoting comp 93.2 0.36 1.2E-05 36.6 7.3 94 289-382 26-150 (167)
248 3o48_A Mitochondria fission 1 93.1 0.34 1.2E-05 35.1 6.7 71 351-421 37-113 (134)
249 1qsa_A Protein (soluble lytic 93.0 6.5 0.00022 37.6 32.0 227 196-440 228-470 (618)
250 3lpz_A GET4 (YOR164C homolog); 92.7 4.5 0.00016 34.9 21.2 163 157-345 41-214 (336)
251 4fhn_B Nucleoporin NUP120; pro 92.3 12 0.00042 39.0 20.2 116 252-370 842-987 (1139)
252 4gns_B Protein CSD3, chitin bi 91.3 2.1 7.2E-05 41.8 12.0 123 54-178 253-398 (754)
253 2uwj_G Type III export protein 91.2 2.4 8.3E-05 28.7 9.1 85 232-321 21-105 (115)
254 2p58_C Putative type III secre 90.9 2.6 8.9E-05 28.6 9.5 85 232-321 22-106 (116)
255 2uwj_G Type III export protein 90.6 0.87 3E-05 30.8 5.9 53 25-79 46-98 (115)
256 2p58_C Putative type III secre 90.0 0.94 3.2E-05 30.7 5.7 51 26-78 48-98 (116)
257 1v54_E Cytochrome C oxidase po 90.0 1.4 4.8E-05 30.0 6.6 61 300-362 27-87 (109)
258 1y8m_A FIS1; mitochondria, unk 89.5 3 0.0001 30.7 8.6 66 383-448 36-105 (144)
259 1v54_E Cytochrome C oxidase po 89.4 3.1 0.0001 28.4 7.8 46 67-112 28-73 (109)
260 1zbp_A Hypothetical protein VP 88.8 1.3 4.4E-05 36.7 7.1 58 364-421 7-66 (273)
261 3o48_A Mitochondria fission 1 88.8 2.2 7.4E-05 31.0 7.4 62 386-447 40-105 (134)
262 2ff4_A Probable regulatory pro 88.4 2.1 7.3E-05 38.3 9.0 55 123-177 175-231 (388)
263 4fhn_B Nucleoporin NUP120; pro 88.3 13 0.00043 38.9 15.8 60 389-448 902-966 (1139)
264 3ltm_A Alpha-REP4; protein eng 87.7 9.1 0.00031 30.4 18.2 20 45-64 29-48 (211)
265 1zbp_A Hypothetical protein VP 87.4 6.1 0.00021 32.8 10.2 118 291-421 5-135 (273)
266 2wpv_A GET4, UPF0363 protein Y 87.0 14 0.00047 31.7 22.6 164 157-346 39-216 (312)
267 2y69_E Cytochrome C oxidase su 84.9 3.6 0.00012 29.8 6.6 60 301-362 71-130 (152)
268 2y69_E Cytochrome C oxidase su 84.3 7.1 0.00024 28.3 7.8 42 104-145 73-114 (152)
269 3esl_A Checkpoint serine/threo 83.7 9.9 0.00034 29.9 9.3 50 367-416 92-145 (202)
270 4b4t_R RPN7, 26S proteasome re 81.8 6.5 0.00022 35.7 9.0 61 320-380 133-194 (429)
271 3txn_A 26S proteasome regulato 81.2 29 0.001 30.8 25.0 282 122-415 22-343 (394)
272 3ltm_A Alpha-REP4; protein eng 80.6 19 0.00066 28.4 17.8 50 15-64 30-79 (211)
273 2zu6_B Programmed cell death p 79.8 28 0.00095 29.7 14.9 198 21-219 6-239 (307)
274 3ltj_A Alpharep-4; protein eng 79.2 21 0.00071 27.9 18.1 160 41-210 20-179 (201)
275 4a1g_A Mitotic checkpoint seri 76.1 19 0.00066 26.8 8.3 45 405-449 84-130 (152)
276 3eu9_A Huntingtin-interacting 75.7 13 0.00046 29.8 8.6 110 26-144 14-131 (240)
277 4b4t_R RPN7, 26S proteasome re 75.2 16 0.00054 33.1 9.5 57 121-177 133-194 (429)
278 3kea_A K1L; tropism, ANK repea 69.4 24 0.00084 29.5 8.9 20 24-43 34-53 (285)
279 3ltj_A Alpharep-4; protein eng 68.7 39 0.0013 26.3 19.9 152 252-414 28-179 (201)
280 3esl_A Checkpoint serine/threo 67.7 37 0.0013 26.7 8.5 57 62-118 92-149 (202)
281 2wvi_A Mitotic checkpoint seri 66.6 29 0.001 26.3 7.6 32 385-416 95-126 (164)
282 4b4t_P 26S proteasome regulato 66.3 77 0.0026 28.8 23.0 97 285-381 139-245 (445)
283 2nsz_A Programmed cell death p 64.9 22 0.00076 25.6 6.5 63 21-83 10-77 (129)
284 4b4t_S RPN3, 26S proteasome re 64.3 91 0.0031 28.9 13.0 60 253-312 232-299 (523)
285 1wdy_A 2-5A-dependent ribonucl 59.3 44 0.0015 27.5 8.7 57 23-83 7-66 (285)
286 4aez_C MAD3, mitotic spindle c 58.5 42 0.0015 26.9 7.5 46 371-416 131-180 (223)
287 4a1g_A Mitotic checkpoint seri 58.4 55 0.0019 24.4 8.0 19 228-246 112-130 (152)
288 3eiq_C Programmed cell death p 58.2 95 0.0033 27.1 17.6 69 154-222 220-293 (358)
289 3bqo_A Telomeric repeat-bindin 58.2 43 0.0015 26.1 7.1 34 394-427 125-158 (211)
290 2d2s_A Exocyst complex compone 57.9 75 0.0026 25.8 13.7 88 55-145 24-117 (235)
291 2ion_A PDCD4, programmed cell 57.7 19 0.00064 27.0 5.2 63 21-83 12-79 (152)
292 3ygs_P Procaspase 9; apoptosis 56.0 37 0.0013 23.0 6.0 37 32-68 51-87 (97)
293 2d2s_A Exocyst complex compone 54.8 85 0.0029 25.5 9.2 84 189-275 25-114 (235)
294 1wdy_A 2-5A-dependent ribonucl 53.9 90 0.0031 25.5 12.3 17 327-343 154-170 (285)
295 2ion_A PDCD4, programmed cell 51.2 73 0.0025 23.7 9.2 61 155-215 13-78 (152)
296 3jxi_A Vanilloid receptor-rela 51.2 26 0.00088 28.7 5.7 54 57-110 10-72 (260)
297 3ljn_A Hypothetical protein; a 50.9 50 0.0017 28.7 7.9 91 22-117 21-114 (364)
298 4b4t_S RPN3, 26S proteasome re 50.5 48 0.0016 30.7 7.5 63 319-381 232-297 (523)
299 2zu6_B Programmed cell death p 49.9 68 0.0023 27.3 8.0 67 185-252 169-237 (307)
300 1n11_A Ankyrin; clathrin, BAND 48.8 1.3E+02 0.0046 26.7 10.6 145 22-177 15-169 (437)
301 4gq2_M Nucleoporin NUP120; bet 46.8 2.5E+02 0.0085 28.6 13.6 104 324-433 816-949 (950)
302 1oyz_A Hypothetical protein YI 46.4 1.2E+02 0.0042 24.9 23.7 91 316-414 171-262 (280)
303 2nsz_A Programmed cell death p 46.0 80 0.0027 22.7 10.6 62 155-216 11-77 (129)
304 3kea_A K1L; tropism, ANK repea 45.0 1.3E+02 0.0045 24.9 10.8 140 227-379 38-183 (285)
305 1ya0_A SMG-7 transcript varian 44.5 74 0.0025 29.4 7.9 44 400-443 166-209 (497)
306 2fe3_A Peroxide operon regulat 43.6 49 0.0017 24.3 5.5 35 99-133 36-70 (145)
307 2r9g_A AAA ATPase, central reg 43.2 1.2E+02 0.0041 23.8 9.3 62 187-249 16-85 (204)
308 1ug3_A EIF4GI, eukaryotic prot 43.0 1.6E+02 0.0054 25.5 9.5 140 155-308 15-166 (339)
309 2w57_A Ferric uptake regulatio 40.6 1.1E+02 0.0037 22.6 7.2 62 73-135 6-68 (150)
310 2b7e_A PRE-mRNA processing pro 40.3 32 0.0011 20.7 3.1 30 65-94 2-31 (59)
311 4g8k_A 2-5A-dependent ribonucl 39.6 1.8E+02 0.006 24.7 10.8 56 22-82 26-85 (337)
312 3eu9_A Huntingtin-interacting 39.3 1.4E+02 0.0048 23.5 8.6 20 428-447 215-234 (240)
313 4ets_A Ferric uptake regulatio 38.4 55 0.0019 24.7 5.2 69 66-135 14-85 (162)
314 2xig_A Ferric uptake regulatio 38.3 69 0.0024 23.7 5.7 37 98-134 40-76 (150)
315 2o03_A Probable zinc uptake re 37.7 56 0.0019 23.5 4.9 46 54-99 15-60 (131)
316 1wgl_A TOLL-interacting protei 37.3 54 0.0019 19.7 3.9 48 407-456 11-59 (59)
317 3b7b_A Euchromatic histone-lys 37.1 79 0.0027 25.1 6.5 208 23-246 13-236 (237)
318 3bge_A Predicted ATPase; struc 36.9 1.5E+02 0.0051 23.2 8.6 46 186-231 8-56 (201)
319 3ygs_P Procaspase 9; apoptosis 36.3 52 0.0018 22.2 4.2 32 167-198 53-84 (97)
320 3hra_A Ankyrin repeat family p 36.1 53 0.0018 25.3 5.1 20 26-45 10-29 (201)
321 3ljn_A Hypothetical protein; a 36.0 1.6E+02 0.0054 25.4 8.7 80 4-83 34-115 (364)
322 3qil_A Clathrin heavy chain 1; 36.0 6.1 0.00021 27.9 -0.5 70 28-105 16-85 (125)
323 3eyy_A Putative iron uptake re 35.6 73 0.0025 23.4 5.4 42 55-97 24-65 (145)
324 3ctd_A Putative ATPase, AAA fa 34.6 1.7E+02 0.0058 23.1 8.2 67 183-249 33-107 (213)
325 2fe3_A Peroxide operon regulat 34.4 1.3E+02 0.0046 21.9 6.7 60 208-268 13-72 (145)
326 3mwm_A ZUR, putative metal upt 34.3 50 0.0017 24.1 4.3 45 54-98 18-62 (139)
327 2fu4_A Ferric uptake regulatio 33.6 93 0.0032 19.8 6.7 60 74-134 7-67 (83)
328 1k1a_A B-cell lymphoma 3-encod 33.4 1.5E+02 0.0052 23.3 7.7 187 90-283 12-211 (241)
329 2keb_A DNA polymerase subunit 32.5 1.2E+02 0.004 20.6 5.3 30 68-97 28-57 (101)
330 3jxi_A Vanilloid receptor-rela 32.4 63 0.0022 26.3 5.2 85 92-177 10-116 (260)
331 3bu8_A Telomeric repeat-bindin 32.0 1.9E+02 0.0066 23.0 7.8 48 299-346 88-142 (235)
332 1mzb_A Ferric uptake regulatio 31.9 1.2E+02 0.0041 21.9 6.0 40 55-94 23-63 (136)
333 3txn_A 26S proteasome regulato 30.8 2.9E+02 0.0097 24.6 26.3 279 153-451 21-345 (394)
334 3eyy_A Putative iron uptake re 30.3 1.3E+02 0.0044 22.0 6.0 61 307-370 8-68 (145)
335 1oyz_A Hypothetical protein YI 30.1 2.3E+02 0.0078 23.2 23.7 111 250-370 140-251 (280)
336 3bu8_A Telomeric repeat-bindin 29.8 2.1E+02 0.0072 22.8 7.9 21 125-145 120-140 (235)
337 2ijq_A Hypothetical protein; s 29.6 1.7E+02 0.0057 22.1 6.3 54 293-346 42-103 (161)
338 2pnn_A Transient receptor pote 29.5 87 0.003 25.7 5.6 21 59-79 20-40 (273)
339 4ets_A Ferric uptake regulatio 28.4 1.5E+02 0.0051 22.3 6.1 69 199-268 14-85 (162)
340 2xig_A Ferric uptake regulatio 27.8 1.8E+02 0.0062 21.4 7.0 59 208-267 18-76 (150)
341 1n11_A Ankyrin; clathrin, BAND 27.7 3.2E+02 0.011 24.2 9.9 332 91-455 18-372 (437)
342 3aji_A 26S proteasome non-ATPa 27.4 2.2E+02 0.0076 22.2 10.3 112 23-144 8-128 (231)
343 2wvi_A Mitotic checkpoint seri 27.3 2E+02 0.0069 21.7 9.9 55 66-120 77-132 (164)
344 3hra_A Ankyrin repeat family p 26.7 1.2E+02 0.0042 23.1 5.8 50 22-72 40-92 (201)
345 2crb_A Nuclear receptor bindin 26.7 88 0.003 20.8 3.7 24 389-412 18-41 (97)
346 2o03_A Probable zinc uptake re 25.5 1.3E+02 0.0044 21.5 5.1 42 291-332 18-59 (131)
347 2ijq_A Hypothetical protein; s 24.9 2E+02 0.007 21.6 6.1 52 61-112 44-103 (161)
348 2f6m_A Suppressor protein STP2 24.9 1.3E+02 0.0043 18.6 4.7 47 388-434 4-50 (65)
349 2r9g_A AAA ATPase, central reg 24.8 2.5E+02 0.0087 22.0 8.9 39 294-333 25-63 (204)
350 4gq2_M Nucleoporin NUP120; bet 24.6 5.7E+02 0.019 26.0 11.9 108 157-266 816-950 (950)
351 4hbd_A KN motif and ankyrin re 23.8 1.8E+02 0.0063 23.8 6.6 14 162-175 224-237 (276)
352 3ax2_A Mitochondrial import re 23.4 1.5E+02 0.005 18.8 4.7 30 392-421 23-52 (73)
353 2qx5_A Nucleoporin NIC96; mRNA 23.1 5.1E+02 0.018 24.9 20.7 336 54-412 157-564 (661)
354 3eiq_C Programmed cell death p 23.1 3.8E+02 0.013 23.4 15.0 26 122-147 57-82 (358)
355 2w57_A Ferric uptake regulatio 22.8 2.3E+02 0.0079 20.8 7.5 62 206-268 6-68 (150)
356 1oai_A Nuclear RNA export fact 22.4 58 0.002 19.6 2.2 21 333-353 35-55 (59)
357 3us6_A Histidine-containing ph 22.4 2.4E+02 0.0082 20.9 9.1 43 320-366 9-51 (153)
358 1mzb_A Ferric uptake regulatio 22.3 2.2E+02 0.0075 20.4 6.9 60 207-267 8-68 (136)
359 2cfu_A SDSA1; SDS-hydrolase, l 22.0 1.8E+02 0.0061 28.1 6.7 65 371-438 437-501 (658)
360 2ko4_A Mediator of RNA polymer 22.0 1.6E+02 0.0056 18.8 4.8 38 39-76 24-63 (81)
361 3mwm_A ZUR, putative metal upt 21.6 1.2E+02 0.0041 22.0 4.3 43 326-369 21-63 (139)
362 3bge_A Predicted ATPase; struc 21.2 3E+02 0.01 21.5 7.9 40 294-333 18-57 (201)
363 1bd8_A P19INK4D CDK4/6 inhibit 20.2 1.2E+02 0.0042 21.9 4.3 16 192-207 9-24 (156)
364 2rfa_A Transient receptor pote 20.1 2.8E+02 0.0097 21.6 6.9 165 4-179 17-222 (232)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-41 Score=325.91 Aligned_cols=429 Identities=12% Similarity=0.008 Sum_probs=376.7
Q ss_pred CCcchhhhHHHHHHHccCChHHHHHHhccCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 012360 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFS 92 (465)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 92 (465)
.+++..|+.++..|.+.|++++|+.+|+++. .|+..++..++.+|.+.|++++|..+|+++... +++..+++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 3678889999999999999999999999986 567788999999999999999999999988653 678889999999
Q ss_pred HhcchhhhhhhhHHHHHHHHh---------------CCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCC-chhHH
Q 012360 93 ACARLEKLHYGKTVHCYATKV---------------GLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRN-IVSLN 155 (465)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~ 155 (465)
++.+.|++++|.++|+++... +.+.+..+++.++.+|.+.|++++|.++|+++ ...|+ ..++.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999853221 22446789999999999999999999999998 33443 23333
Q ss_pred HH--------------------------------------HHHHHhcCChHHHHHHHHHhhc--CChHHHHHHHHHHHHc
Q 012360 156 IL--------------------------------------INGYIDMELVDLAREVFDEIVD--KDIVLWRSMMHGCVKA 195 (465)
Q Consensus 156 ~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~ 195 (465)
.+ +..|.+.|++++|.++|+++.. ++..+++.++..|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 22 4556688999999999999966 7999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 012360 196 KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275 (465)
Q Consensus 196 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (465)
|++++|.++|+++.+.+. .+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++..|.+.|++++|.++|
T Consensus 319 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999998753 377789999999999999999999999998654 567889999999999999999999999
Q ss_pred hcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 012360 276 YKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352 (465)
Q Consensus 276 ~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 352 (465)
+++. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 473 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQY 473 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 9864 3467899999999999999999999999999873 346789999999999999999999999999863 345
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCc--cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-------EDK--FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 423 (465)
+..+|..++..|.+.|++++|.++|+++.. .|+ ..+|..++.+|.+.|++++|++.++++.+.+|+++.+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 788999999999999999999999998732 454 57899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 424 VLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 424 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
..++.+|.+.|++++|.++++++.+..
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999987753
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-39 Score=316.59 Aligned_cols=425 Identities=9% Similarity=-0.026 Sum_probs=367.7
Q ss_pred ccchhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHH-c
Q 012360 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIF-E 78 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~ 78 (465)
|..+++.|.+ ..|+..++..++..|.+.|++++|+.+|+.+. .++..+++.++.+|.+.|++++|+++|+++.. .
T Consensus 103 A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 180 (597)
T 2xpi_A 103 AAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR 180 (597)
T ss_dssp HHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC
T ss_pred HHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc
Confidence 4567778874 45788999999999999999999999999984 67889999999999999999999999995321 1
Q ss_pred --------------CCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhH----------------------
Q 012360 79 --------------GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME---------------------- 122 (465)
Q Consensus 79 --------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------------------- 122 (465)
+.+++..+|..++.++.+.|++++|.++|+++.+.+.. +...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~ 259 (597)
T 2xpi_A 181 KDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLN 259 (597)
T ss_dssp ----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSC
T ss_pred ccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcC
Confidence 22345789999999999999999999999999987522 22222
Q ss_pred ----------------HHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---CCh
Q 012360 123 ----------------NALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD---KDI 182 (465)
Q Consensus 123 ----------------~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~ 182 (465)
+.++..|.+.|++++|.++|+++ ..+++..+|+.++.++.+.|++++|.++|+++.. .+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 339 (597)
T 2xpi_A 260 YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNL 339 (597)
T ss_dssp THHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC
T ss_pred CcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccH
Confidence 22355666789999999999999 4457899999999999999999999999999853 367
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 012360 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262 (465)
Q Consensus 183 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (465)
.+++.++.++.+.|++++|..+++++.+.. +.+..++..+...|.+.|++++|..+|+++.+.. +.+..+++.++.+|
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 417 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSF 417 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 889999999999999999999999998753 4578899999999999999999999999998864 45678999999999
Q ss_pred HhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012360 263 SKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339 (465)
Q Consensus 263 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 339 (465)
.+.|++++|.++|+++. +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.+
T Consensus 418 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 418 AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999998754 4578899999999999999999999999998863 4468899999999999999999999
Q ss_pred HHHHhhcCC---CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 012360 340 LFRRMGGVY---RVQPT--IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNM 412 (465)
Q Consensus 340 ~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (465)
+|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++.. +++..+|..++.+|.+.|++++|.+.++++
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999997531 33566 78999999999999999999999998754 347889999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHhh
Q 012360 413 MKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 413 ~~~~p~~~~~~~~l~~~~~~ 432 (465)
++.+|+++..+..++.+|..
T Consensus 577 l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 577 LAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTC-
T ss_pred HhcCCCChHHHHHHHHHHhc
Confidence 99999999999999887753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.2e-29 Score=233.37 Aligned_cols=372 Identities=10% Similarity=0.039 Sum_probs=294.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh
Q 012360 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135 (465)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 135 (465)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 445667778888888887776653 2233445555666677778888887777777654 45666777788888888888
Q ss_pred HHHHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 012360 136 DEALRLFDEM-GSRRN-IVSLNILINGYIDMELVDLAREVFDEIVD--K-DIVLWRSMMHGCVKAKQPEEALELFKKMID 210 (465)
Q Consensus 136 ~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 210 (465)
++|...|+++ ...|+ ..+|..+..++...|++++|.+.|+++.. | +...+..+...+...|++++|.+.|+++.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888777 33444 44677788888888888888888877743 3 445677777888888888888888888887
Q ss_pred cCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHH
Q 012360 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWT 287 (465)
Q Consensus 211 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~ 287 (465)
.. +.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++.. +.+..++.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 53 2346677788888888888888888888888765 4456778888888888899999888887654 34577888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh
Q 012360 288 TMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366 (465)
Q Consensus 288 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (465)
.+...+...|++++|...|+++.+. .| +..++..+..++.+.|++++|+..++++.+ ..+.+..++..+...+.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHH
Confidence 8999999999999999999999887 44 467889999999999999999999999986 345678899999999999
Q ss_pred cCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCC
Q 012360 367 AGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 435 (465)
.|++++|.+.++++.. .| +..++..++..+.+.|++++|+..++++++..|+++..|..++..+...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999998765 34 567899999999999999999999999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.4e-28 Score=224.69 Aligned_cols=352 Identities=12% Similarity=0.048 Sum_probs=307.0
Q ss_pred HHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChH
Q 012360 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVD 168 (465)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 168 (465)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++.. ..+.+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 455677899999999999998874 445566778888899999999999999887 43556789999999999999999
Q ss_pred HHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHH
Q 012360 169 LAREVFDEIVD--K-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245 (465)
Q Consensus 169 ~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (465)
+|.+.|+++.. | +..+|..+..++.+.|++++|.+.|+++.+... .+...+..+...+...|++++|...++++.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999843 4 566899999999999999999999999998632 2345566777888899999999999999988
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHH
Q 012360 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATF 321 (465)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~ 321 (465)
.. +.+..++..+..++...|++++|...|+++. +.+...|..+...+...|++++|...+++..+. .| +..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHH
Confidence 74 4457889999999999999999999998865 345678899999999999999999999999876 45 46788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhc
Q 012360 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITY 399 (465)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 399 (465)
..+..++...|++++|+..|+++.+. .+.+..++..+..++.+.|++++|.+.++++.. +++..++..++..+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999863 244677899999999999999999999998754 44778899999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 400 SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 400 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
|++++|+..++++++..|+++.++..++.++.+.|++++|...++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999988764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.9e-29 Score=234.53 Aligned_cols=184 Identities=15% Similarity=0.184 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc---------hhhHhHHHHHHHHHHcCCCCChh
Q 012360 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL---------SNLQYGRLVHRFILQNNITQDAF 253 (465)
Q Consensus 183 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~ 253 (465)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++. +.++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 457888999999999999999999999999999999999999998754 34788999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012360 254 VKTALIDMYSKCGSLEEALVTFYKTD----CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329 (465)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 329 (465)
+|+.++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998765 57999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (465)
+.|+.++|.+++++|.+. +..|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999876 8899999999999888753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=7.6e-29 Score=231.76 Aligned_cols=182 Identities=12% Similarity=0.120 Sum_probs=115.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchh---------hhhhhhHHHHHHHHhCCccchhh
Q 012360 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE---------KLHYGKTVHCYATKVGLEYMLNM 121 (465)
Q Consensus 51 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~ 121 (465)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+ .++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 467777777777888888888887777777777777877777776543 35666677777777777777777
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhh---CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCCh
Q 012360 122 ENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP 198 (465)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 198 (465)
|+.+|.+|++.|++++|.++|++| |+.||.. +|+.+|.+|++.|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-------------------------------tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR-------------------------------SYGPALFGFCRKGDA 156 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH-------------------------------HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-------------------------------eehHHHHHHHHCCCH
Confidence 777777777777777777777666 4445544 455555555555555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 012360 199 EEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263 (465)
Q Consensus 199 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (465)
++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.|..|+..||+.++..+.
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555444
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.9e-26 Score=218.10 Aligned_cols=262 Identities=9% Similarity=-0.069 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHH---cCChhHHHHHHHHHHH-----cCCCC--------CHHHHHHHHHHhccchhhHhHHHHHHHHHHc
Q 012360 183 VLWRSMMHGCVK---AKQPEEALELFKKMID-----EGVTP--------DEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 183 ~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (465)
..+......+.. .|++++|...|+++.+ ....| +..++..+...+...|++++|...++.+.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 334444444443 6777788777777766 21111 2345566666677777888888887777776
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012360 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323 (465)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 323 (465)
... ..++..+..++...|++++|...++++. +.+...+..+...+...|++++|...+++..+.. +.+...+..
T Consensus 267 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 343 (514)
T 2gw1_A 267 FPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQ 343 (514)
T ss_dssp CCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHH
T ss_pred Ccc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHH
Confidence 432 6677777777777888877777776644 2355677777777888888888888888877663 224456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-c------cchHHHHHHH
Q 012360 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-K------FISYKALLSA 395 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~------~~~~~~l~~~ 395 (465)
+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.. .| + ...+..++..
T Consensus 344 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 344 LACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 777777888888888888877742 233566777777788888888888887776543 11 1 2267777777
Q ss_pred HHh---cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 396 CIT---YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 396 ~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+.. .|++++|+..++++++..|+++.++..++.++.+.|++++|...+++..+.
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 777 788888888888888888887777888888888888888888888777654
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.1e-26 Score=216.33 Aligned_cols=403 Identities=12% Similarity=-0.023 Sum_probs=317.9
Q ss_pred chhhhHHHHHHHccCChHHHHHHhccCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhc
Q 012360 18 IYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95 (465)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 95 (465)
...+..+...+.+.|++++|+..|+++. .|+..+|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 4456777888899999999999999876 5788889999999999999999999999998864 345568888899999
Q ss_pred chhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHH---------------------------------
Q 012360 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF--------------------------------- 142 (465)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~--------------------------------- 142 (465)
..|++++|...|+.+.+.+. ++......++..+........+.+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988763 33333333333333322222211111
Q ss_pred -----HhhCCC--------C-CchhHHHHHHHHHh---cCChHHHHHHHHHhhc----------------C-ChHHHHHH
Q 012360 143 -----DEMGSR--------R-NIVSLNILINGYID---MELVDLAREVFDEIVD----------------K-DIVLWRSM 188 (465)
Q Consensus 143 -----~~~~~~--------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~l 188 (465)
...... | +...+......+.. .|++++|...|+++.. | +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 111101 1 13334444444444 8999999999998855 2 45678888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 012360 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
...+...|++++|...++++.+... +...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999998643 37788888999999999999999999998875 45677889999999999999
Q ss_pred HHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 269 EEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 269 ~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
++|...|++.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999998754 3467789999999999999999999999998762 2345788889999999999999999999997
Q ss_pred cCCCCCCC----hhhHHHHHHHHHh---cCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 346 GVYRVQPT----IEHFVCLVDLLSR---AGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 346 ~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
....-.++ ...+..+...+.. .|++++|...++.+.. +.+..++..++..+...|++++|...++++++..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 53211222 3388899999999 9999999999998754 3366788999999999999999999999999999
Q ss_pred CCCchhHHHH
Q 012360 417 NQSHEAYVLL 426 (465)
Q Consensus 417 p~~~~~~~~l 426 (465)
|.++..+..+
T Consensus 480 ~~~~~~~~~~ 489 (514)
T 2gw1_A 480 RTMEEKLQAI 489 (514)
T ss_dssp SSHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 9988866655
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=7.7e-25 Score=210.36 Aligned_cols=422 Identities=11% Similarity=0.023 Sum_probs=223.8
Q ss_pred cchhhhHHHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 012360 17 DIYVGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSA 93 (465)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 93 (465)
....+..+...+.+.|++++|+..|+.+. +.+..+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+...
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34566677777777888888888887765 3456677777788888888888888888877654 3345567777777
Q ss_pred hcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCC----CchhHHHHHHHHHhcCChH
Q 012360 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRR----NIVSLNILINGYIDMELVD 168 (465)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~ 168 (465)
+...|++++|...++ .... .|+. ....+..+...+....|...++.+ ...| ........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 777888888887775 3322 1211 112233334444456666666665 1111 1111222223333333333
Q ss_pred HHHHHHHHhhcCChH---HHHHHHHHHH--------HcCChhHHHHHHHHHHHcCCCCC------HHHHHHHHHHhccch
Q 012360 169 LAREVFDEIVDKDIV---LWRSMMHGCV--------KAKQPEEALELFKKMIDEGVTPD------EEVMVSVLSACSSLS 231 (465)
Q Consensus 169 ~a~~~~~~~~~~~~~---~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~ 231 (465)
.+...+......+.. ....+...+. ..|++++|..+++++.+...... ..++..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 333333222221111 1222222111 11355556666665554321100 112334444455555
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQ 308 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 308 (465)
++++|...++.+.+.. |+...+..+..++...|++++|...|+++. +.+..++..+...+...|++++|...+++
T Consensus 258 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6666666666665543 335555555666666666666666665443 23445566666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---
Q 012360 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED--- 384 (465)
Q Consensus 309 m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--- 384 (465)
..+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.. .|
T Consensus 336 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 336 AQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 65542 112345555666666666666666666666542 233445555666666666666666666655432 11
Q ss_pred ----ccchHHHHHHHHHhc----------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 385 ----KFISYKALLSACITY----------SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 385 ----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
....+......+... |++++|+..++++++..|+++.++..++.+|.+.|++++|...+++..+.
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 111133334445555 66666666666666666666666666666666666666666666655443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=6.2e-24 Score=199.36 Aligned_cols=320 Identities=13% Similarity=0.116 Sum_probs=206.9
Q ss_pred chhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHH
Q 012360 118 MLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGC 192 (465)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 192 (465)
+...+..+...+.+.|++++|..+|+++ ..+.+..++..+..++...|++++|...|+++.+ .+..++..+...|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3444555555555555555555555554 1123344555555555555555555555555532 2345555666666
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHhccchhhHhHHHHHHHHHHcCCCCChhHHH
Q 012360 193 VKAKQPEEALELFKKMIDEGVTPDE----EVMVSV------------LSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256 (465)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (465)
.+.|++++|...|+++.+. .|+. ..+..+ ...+...|++++|...++.+.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 6666666666666666553 2322 222222 233566677777777777766653 34556666
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH--------
Q 012360 257 ALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSV-------- 324 (465)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l-------- 324 (465)
.+..+|...|++++|...|+++. +.+..+|..++..|...|++++|...|+++.+. .|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 77777777777777777776654 345667777777777778888888888777765 343 3333333
Q ss_pred ----HHHHHhcCCHHHHHHHHHHhhcCCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHH
Q 012360 325 ----LAACRHSGLITEGCQLFRRMGGVYRVQPT-----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALL 393 (465)
Q Consensus 325 ----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~ 393 (465)
...+...|++++|...|+++.+. .|+ ...+..++.++.+.|++++|...++++.. +.+...|..++
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 67788888888888888888753 343 34677788888888888888888887643 33667888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH------------HHhhcC-----ChHHHHHHHHH
Q 012360 394 SACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN------------FYALEG-----HWTEVAEARRN 445 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g-----~~~~a~~~~~~ 445 (465)
.+|...|++++|+..++++++..|+++..+..++. .|...| +.+++.+.+++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 88888888888988888888888888888888873 344455 45556666665
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1e-23 Score=197.80 Aligned_cols=377 Identities=10% Similarity=0.008 Sum_probs=225.7
Q ss_pred HHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHH
Q 012360 36 DARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK 112 (465)
Q Consensus 36 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (465)
.+...|.++. +.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444 2256678888999999999999999999998763 44677888888899999999999999999988
Q ss_pred hCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCc----hhHHHHHHH------------HHhcCChHHHHHHHH
Q 012360 113 VGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRNI----VSLNILING------------YIDMELVDLAREVFD 175 (465)
Q Consensus 113 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~------------~~~~~~~~~a~~~~~ 175 (465)
.+ +.+..++..+..+|.+.|++++|.+.|+++ ...|+. .++..++.. +...|++++|...|+
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 75 445677888899999999999999999888 445543 445544333 455555555555555
Q ss_pred Hhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCCh
Q 012360 176 EIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252 (465)
Q Consensus 176 ~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 252 (465)
++.. .+..++..+...|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+.
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 245 (450)
T 2y4t_A 168 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHK 245 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChH
Confidence 5422 244455555555555555555555555555432 2234445555555555555555555555554432 1112
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHH
Q 012360 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-----EATFVSVLAA 327 (465)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~ 327 (465)
..+..+... . ....+..+...+...|++++|...|+++.+. .|+ ...+..+..+
T Consensus 246 ~~~~~~~~~-~------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 246 RCFAHYKQV-K------------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHH-H------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-H------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 222211000 0 0001112256666777777777777777664 343 2356666677
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHH----------
Q 012360 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSA---------- 395 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~---------- 395 (465)
+.+.|++++|+..++++.+. .+.+...+..+..+|...|++++|...++++.. .| +...+..+..+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 382 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKR 382 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccch
Confidence 77777777777777776642 233566677777777777777777777776533 33 33444444422
Q ss_pred --HHhcC-----ChHHHHHHHHH-HHHhCCCCch----------hHHHHHHHHhhcCChHHH
Q 012360 396 --CITYS-----EFDLGKKVANN-MMKLGNQSHE----------AYVLLSNFYALEGHWTEV 439 (465)
Q Consensus 396 --~~~~~-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~a 439 (465)
|...| +.+++.+.|++ +++..|+... .+..+..+|...|+.+.+
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred hHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 22333 56777888887 6666665432 455566666666655543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3.6e-22 Score=191.74 Aligned_cols=414 Identities=10% Similarity=-0.035 Sum_probs=309.3
Q ss_pred CccchhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 012360 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIF 77 (465)
Q Consensus 1 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 77 (465)
+|...++.+++.. +.++..+..+..+|.+.|++++|++.|+.+. +.+..+|..+..++...|++++|+..|+.+ .
T Consensus 43 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~ 120 (537)
T 3fp2_A 43 EAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL-S 120 (537)
T ss_dssp -CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH-h
Confidence 3567788888765 5678899999999999999999999999876 446778999999999999999999999743 2
Q ss_pred cCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCC--ccchhhHHHHHHHHHhCCChHHHHHHHHhhC-CCCCch-h
Q 012360 78 EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL--EYMLNMENALLLMYAKCKEMDEALRLFDEMG-SRRNIV-S 153 (465)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~ 153 (465)
. .|+.. ...+..+...+....+...++.+..... .+........+..+....+.+.+...+.... ..+... .
T Consensus 121 ~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (537)
T 3fp2_A 121 L--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196 (537)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHH
T ss_pred c--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHH
Confidence 2 33322 2224455556677788888888865421 1111222344556667777777777666652 222222 2
Q ss_pred HHHHHHHHH--------hcCChHHHHHHHHHhhcC--C--------hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 012360 154 LNILINGYI--------DMELVDLAREVFDEIVDK--D--------IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215 (465)
Q Consensus 154 ~~~l~~~~~--------~~~~~~~a~~~~~~~~~~--~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 215 (465)
...+...+. ..|++++|..+|+++... + ..++..+...+...|++++|...++++.+. .|
T Consensus 197 ~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~ 274 (537)
T 3fp2_A 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HP 274 (537)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CC
Confidence 222222222 225889999999988553 2 235677778889999999999999999985 45
Q ss_pred CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHH
Q 012360 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEG 292 (465)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~ 292 (465)
+...+..+...+...|+++.|...++.+.+.. +.+..++..+..++...|++++|...|+++. +.+...+..+...
T Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 353 (537)
T 3fp2_A 275 TPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACL 353 (537)
T ss_dssp CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 67888889999999999999999999998875 4567889999999999999999999998765 3467789999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC----ChhhHHHHHHHHHhc-
Q 012360 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP----TIEHFVCLVDLLSRA- 367 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~- 367 (465)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.....+ ....+..+...+...
T Consensus 354 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 432 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998873 33456888899999999999999999999875311111 122244556777788
Q ss_pred ---------CCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 012360 368 ---------GLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424 (465)
Q Consensus 368 ---------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 424 (465)
|++++|...++++.. +.+...+..++..+...|++++|.+.|+++++..|.++....
T Consensus 433 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999998754 346778999999999999999999999999999999877443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1e-20 Score=171.65 Aligned_cols=305 Identities=12% Similarity=0.074 Sum_probs=175.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHhh-CC-CCCchhHHHHHHHHHhcCChHHHHHHHHHhhc--C-ChHHHHHHHHHHHH
Q 012360 120 NMENALLLMYAKCKEMDEALRLFDEM-GS-RRNIVSLNILINGYIDMELVDLAREVFDEIVD--K-DIVLWRSMMHGCVK 194 (465)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~ 194 (465)
..+..+...+...|++++|...|+++ .. +.+..++..+...+...|++++|...|++... | +...+..+...+..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 33445555566666666666666655 21 22344555566666666666666666665532 2 44566666677777
Q ss_pred cCChhHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHH
Q 012360 195 AKQPEEALELFKKMIDEGVTP----DEEVMVSV------------LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTAL 258 (465)
Q Consensus 195 ~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 258 (465)
.|++++|...++++.+. .| +...+..+ ...+...|++++|...++.+.+.. +.+..++..+
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 160 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR 160 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 77777777777776653 33 22222222 344556666666666666665543 3345556666
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHH------------
Q 012360 259 IDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFV------------ 322 (465)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~------------ 322 (465)
..++...|++++|...++++. +.+...+..+...+...|++++|...+++..+. .|+ ...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHH
Confidence 666666666666666665543 234556666666666666666666666666654 232 22221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-h----hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHH
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPT-I----EHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSA 395 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 395 (465)
.+...+...|++++|...++++.+. .|+ . ..+..+..++...|++++|.+.+++... .| +..++..++..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 2244566667777777777666642 222 2 2233455666666666666666665533 22 45566666666
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 012360 396 CITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 432 (465)
+...|++++|...++++++..|+++..+..+..+...
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 6666677777777777666666666666555555443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.8e-20 Score=168.76 Aligned_cols=297 Identities=12% Similarity=0.026 Sum_probs=248.0
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012360 150 NIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226 (465)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 226 (465)
++..+..+...+...|++++|...|+++.. .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 345677888999999999999999999844 367889999999999999999999999999863 3356788888999
Q ss_pred hccchhhHhHHHHHHHHHHcCCC--CChhHHHHH------------HHHHHhcCCHHHHHHHHhcCC---CCChhhHHHH
Q 012360 227 CSSLSNLQYGRLVHRFILQNNIT--QDAFVKTAL------------IDMYSKCGSLEEALVTFYKTD---CKDVVTWTTM 289 (465)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l 289 (465)
+...|++++|...++.+.+.... .+...+..+ ...+...|++++|...++++. +.+...+..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999886420 244444444 588899999999999998865 3467789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH-----------
Q 012360 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----------- 358 (465)
Q Consensus 290 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------- 358 (465)
...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHH
Confidence 999999999999999999998873 346788999999999999999999999999853 223333332
Q ss_pred -HHHHHHHhcCCHHHHHHHHHhCCC-CCc-c----chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 359 -CLVDLLSRAGLLYQAEEFIKIMPA-EDK-F----ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 359 -~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
.+...+.+.|++++|...++++.. .|+ . ..+..+...+...|++++|+..++++++..|+++.++..++.++.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 336779999999999999998654 333 2 235567889999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHhc
Q 012360 432 LEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 432 ~~g~~~~a~~~~~~~~~~~ 450 (465)
..|++++|...++++.+..
T Consensus 318 ~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 9999999999999887653
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=4.5e-19 Score=167.81 Aligned_cols=376 Identities=10% Similarity=0.030 Sum_probs=305.4
Q ss_pred HHHhccCC-CCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc----hhhhhhhhHHHH
Q 012360 38 RVLFDKMP-FRDVGSWNTLMSIYND----FSDSGEVLILFKQLIFEGIVADKITLVILFSACAR----LEKLHYGKTVHC 108 (465)
Q Consensus 38 ~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 108 (465)
...++... ..+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.++
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 34444332 4577788888888888 899999999999998864 45667777777777 889999999999
Q ss_pred HHHHhCCccchhhHHHHHHHHHh----CCChHHHHHHHHhhCCCCCchhHHHHHHHHHh----cCChHHHHHHHHHhhc-
Q 012360 109 YATKVGLEYMLNMENALLLMYAK----CKEMDEALRLFDEMGSRRNIVSLNILINGYID----MELVDLAREVFDEIVD- 179 (465)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~- 179 (465)
...+.| +...+..|...|.. .+++++|...|++.-...+..++..+...|.. .++.++|.+.|++..+
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 998876 45556678888887 78999999999998334467778888888887 7899999999998855
Q ss_pred CChHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----chhhHhHHHHHHHHHHcCCCCC
Q 012360 180 KDIVLWRSMMHGCVK----AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS----LSNLQYGRLVHRFILQNNITQD 251 (465)
Q Consensus 180 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 251 (465)
.+...+..+...|.. .++.++|...|++..+.| +...+..+...+.. .+++++|...++...+.+ +
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 254 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N 254 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 477888888888888 899999999999998865 45566666666654 789999999999998865 4
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHH
Q 012360 252 AFVKTALIDMYSK----CGSLEEALVTFYKTDC-KDVVTWTTMIEGLANY-----GLGNEALRVFYQMERKGIKPNEATF 321 (465)
Q Consensus 252 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~ 321 (465)
...+..+...|.. .+++++|...|++..+ .++..+..+...|... +++++|..+|++..+.| +...+
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 5667778888887 8999999999988664 4667888888888887 89999999999998875 45667
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCccchHHHHHH
Q 012360 322 VSVLAACRHSG---LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR----AGLLYQAEEFIKIMPAEDKFISYKALLS 394 (465)
Q Consensus 322 ~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 394 (465)
..+...|...| ++++|+++|++..+. .+...+..|...|.. .+++++|.+.|++.....++..+..+..
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~ 407 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 77777777756 889999999999864 457788889999998 8999999999999876777888999999
Q ss_pred HHHh----cCChHHHHHHHHHHHHhCCC---CchhHHHHHHHHhh
Q 012360 395 ACIT----YSEFDLGKKVANNMMKLGNQ---SHEAYVLLSNFYAL 432 (465)
Q Consensus 395 ~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 432 (465)
.|.. .+++++|...|+++.+.+|+ ++.....++..+..
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9988 89999999999999999954 66666666665554
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=8.9e-20 Score=163.46 Aligned_cols=285 Identities=11% Similarity=0.019 Sum_probs=179.4
Q ss_pred ccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHH
Q 012360 116 EYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMH 190 (465)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~ 190 (465)
+.+...+..+...+...|++++|.++|+++ ..+.+..++..++..+...|++++|...++++.. .+...+..+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 344555556666666666666666666665 2122333444455555555555555555555422 13444555555
Q ss_pred HHHHcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 012360 191 GCVKAK-QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269 (465)
Q Consensus 191 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (465)
.+...| ++++|...|++..+. . +.+...+..+..++...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~-----------------------------------~-~~~~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTL-----------------------------------E-KTYGPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTT-----------------------------------C-TTCTHHHHHHHHHHHHHTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHh-----------------------------------C-CccHHHHHHHHHHHHHccCHH
Confidence 555555 555555555555443 2 222334444555555555555
Q ss_pred HHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012360 270 EALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346 (465)
Q Consensus 270 ~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (465)
+|...|+++. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+
T Consensus 143 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5555554433 1234455556667777777777777777777652 23456777777888888888888888877764
Q ss_pred CC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 347 VY-------RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 347 ~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
.. ..+....++..+..++...|++++|...+++... +.+...+..+...+...|++++|.+.++++++..|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 21 0133456788888888888999999888887643 34677888889999999999999999999999999
Q ss_pred CCchhHHHHHHHH-hhcCChH
Q 012360 418 QSHEAYVLLSNFY-ALEGHWT 437 (465)
Q Consensus 418 ~~~~~~~~l~~~~-~~~g~~~ 437 (465)
+++..+..++.++ ...|+.+
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC--
T ss_pred CchHHHHHHHHHHHHHhCchh
Confidence 9998889998888 4556544
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=4.1e-18 Score=161.24 Aligned_cols=363 Identities=14% Similarity=0.027 Sum_probs=301.0
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHhcc----hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHh----CCChHHHH
Q 012360 68 VLILFKQLIFEGIVADKITLVILFSACAR----LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK----CKEMDEAL 139 (465)
Q Consensus 68 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 139 (465)
++..++...+.| +...+..+...+.. .++++.|...++...+.| +...+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 455566555543 55666667666666 789999999999998875 45567778888888 89999999
Q ss_pred HHHHhhCCCCCchhHHHHHHHHHh----cCChHHHHHHHHHhhcC-ChHHHHHHHHHHHH----cCChhHHHHHHHHHHH
Q 012360 140 RLFDEMGSRRNIVSLNILINGYID----MELVDLAREVFDEIVDK-DIVLWRSMMHGCVK----AKQPEEALELFKKMID 210 (465)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 210 (465)
+.|++.-...+..++..+...|.. .+++++|.+.|++.... +...+..+...|.. .++.++|++.|++..+
T Consensus 100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 999998334567788888888888 88999999999998654 67788888888887 7899999999999988
Q ss_pred cCCCCCHHHHHHHHHHhcc----chhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-C
Q 012360 211 EGVTPDEEVMVSVLSACSS----LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK----CGSLEEALVTFYKTDC-K 281 (465)
Q Consensus 211 ~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~ 281 (465)
.| +...+..+...|.. .++.++|...|+...+.+ +...+..+...|.. .+++++|..+|++..+ .
T Consensus 180 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 180 QG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred CC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 65 56677777777766 899999999999998875 46677788888886 7899999999988654 4
Q ss_pred ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhcCCCCCC
Q 012360 282 DVVTWTTMIEGLAN----YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS-----GLITEGCQLFRRMGGVYRVQP 352 (465)
Q Consensus 282 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~ 352 (465)
+...+..+...|.. .+++++|..+|++..+.| +...+..+...|... +++++|+.+|++..+. .
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~ 326 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----G 326 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----T
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----C
Confidence 66778888888888 899999999999998764 456777788888777 8999999999999864 3
Q ss_pred ChhhHHHHHHHHHhcC---CHHHHHHHHHhCCCCCccchHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 012360 353 TIEHFVCLVDLLSRAG---LLYQAEEFIKIMPAEDKFISYKALLSACIT----YSEFDLGKKVANNMMKLGNQSHEAYVL 425 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 425 (465)
+...+..+...|...| ++++|.++|++....+++..+..+...|.. .+++++|++.|+++.+.+ ++..+..
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~ 404 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQ 404 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHH
Confidence 4567778888888866 789999999988777788899999999988 899999999999999875 4677999
Q ss_pred HHHHHhh----cCChHHHHHHHHHHHHhcC
Q 012360 426 LSNFYAL----EGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 426 l~~~~~~----~g~~~~a~~~~~~~~~~~~ 451 (465)
|+.+|.. .+++++|...+++..+.+.
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999998 8999999999999988764
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.5e-19 Score=161.90 Aligned_cols=264 Identities=9% Similarity=0.022 Sum_probs=221.6
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHH
Q 012360 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260 (465)
Q Consensus 181 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 260 (465)
+...+..++..+...|++++|.++++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 55566677777888888888888888887753 2344556666777788888899998888888764 446778888999
Q ss_pred HHHhcC-CHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 012360 261 MYSKCG-SLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336 (465)
Q Consensus 261 ~~~~~~-~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 336 (465)
.+...| ++++|...|++.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 999999 9999999998755 3456789999999999999999999999998873 2235667778999999999999
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-----------CCccchHHHHHHHHHhcCChHHH
Q 012360 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-----------EDKFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a 405 (465)
|...++++.+. .+.+...+..+...+...|++++|...++++.. .....++..++..+...|++++|
T Consensus 178 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999963 345678899999999999999999999987643 22456899999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+..++++++..|.++..+..++.++...|++++|...+++..+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999977543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=8e-18 Score=160.91 Aligned_cols=417 Identities=11% Similarity=0.060 Sum_probs=287.0
Q ss_pred hHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 012360 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF---RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVA 82 (465)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 82 (465)
++..++.. +-+...|..++. +.+.|++++|+.+|+.+.. .+...|..++..+.+.|++++|..+|+++... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 44555443 457778888888 4778999999999998763 35667889999999999999999999999875 46
Q ss_pred chhhHHHHHHHh-cchhhhhhhhH----HHHHHHHh-CCcc-chhhHHHHHHHHHh---------CCChHHHHHHHHhhC
Q 012360 83 DKITLVILFSAC-ARLEKLHYGKT----VHCYATKV-GLEY-MLNMENALLLMYAK---------CKEMDEALRLFDEMG 146 (465)
Q Consensus 83 ~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 146 (465)
+...|...+... ...|+.+.|.+ +|+..... |..| +..+|...+....+ .|+++.|..+|++.-
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 766776666433 34567776665 66666553 4433 45667777766554 578888888888873
Q ss_pred CCCCc---hhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHH------HcC---CC
Q 012360 147 SRRNI---VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI------DEG---VT 214 (465)
Q Consensus 147 ~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~---~~ 214 (465)
..|.. ..|..........|. ..+..+ +. .+.+++..|..++.... +.. ++
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~---------------l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLAKKM---------------IE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHHHHH---------------HH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHHHHH---------------HH--HhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 24432 122222211101110 011111 10 12344555665555422 211 23
Q ss_pred CCH--------HHHHHHHHHhcc----chhh----HhHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCHH--
Q 012360 215 PDE--------EVMVSVLSACSS----LSNL----QYGRLVHRFILQNNITQDAFVKTALIDMYSK-------CGSLE-- 269 (465)
Q Consensus 215 ~~~--------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-- 269 (465)
|+. ..|...+..... .++. ..+..+|++.+... +.+...|..++..+.+ .|+++
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 331 233333322111 1222 36777888888763 5567888888888875 68887
Q ss_pred -----HHHHHHhcCCC---C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHH
Q 012360 270 -----EALVTFYKTDC---K-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-E-ATFVSVLAACRHSGLITEGC 338 (465)
Q Consensus 270 -----~a~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~-~~~~~l~~~~~~~~~~~~a~ 338 (465)
+|..+|++... | +...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.
T Consensus 299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHH
Confidence 89999987653 3 5678999999999999999999999999986 564 3 47888888888999999999
Q ss_pred HHHHHhhcCCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 339 QLFRRMGGVYRVQPTIEHFVCLVDL-LSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
.+|+++.+. .+.+...+...+.. +...|+.++|..+|+.... .| ++..|..++..+.+.|+.++|..+|+++++.
T Consensus 377 ~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 377 MIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 999999864 12233333332222 3468999999999997654 33 6788999999999999999999999999998
Q ss_pred CCCCch----hHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 416 GNQSHE----AYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 416 ~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.|.++. +|...+......|+.+.+..+.+++.+.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 876655 7888888888999999999999888654
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=7.6e-20 Score=166.66 Aligned_cols=299 Identities=11% Similarity=0.005 Sum_probs=213.6
Q ss_pred HHHhCCChHHHHH-HHHhh-CCCC-----CchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHHHHcCC
Q 012360 128 MYAKCKEMDEALR-LFDEM-GSRR-----NIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGCVKAKQ 197 (465)
Q Consensus 128 ~~~~~g~~~~A~~-~~~~~-~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 197 (465)
++...|++++|.. .+++. ...| +...+..+...+...|++++|...|+++.. .+..++..+...+...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4455688888888 87765 2222 345677888888888888888888888744 256778888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 012360 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277 (465)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 277 (465)
+++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.... +...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 888888888887764 335667777777788888888888888887775421 12111111000 00
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhh
Q 012360 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356 (465)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (465)
...+ ...+..+...+ ..|++++|...++++.+..... +..++..+...+...|++++|+..++++... .+.+...
T Consensus 178 ~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~ 253 (368)
T 1fch_A 178 GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLL 253 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHH
Confidence 0000 01111222333 7889999999999998863211 4778889999999999999999999999853 3446788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-----------chhH
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS-----------HEAY 423 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~ 423 (465)
+..+...+...|++++|...++++.. +.+..++..++..+...|++++|...++++++..|++ ..+|
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 99999999999999999999998754 3467789999999999999999999999999998877 7889
Q ss_pred HHHHHHHhhcCChHHHHHHHHHH
Q 012360 424 VLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 424 ~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
..++.+|...|++++|..++++.
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999999999999988743
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=2.7e-19 Score=159.68 Aligned_cols=359 Identities=12% Similarity=0.063 Sum_probs=169.8
Q ss_pred CcchhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhc
Q 012360 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95 (465)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 95 (465)
+++.+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..++. .+++.+.+.++.+|.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 44468889999999999999999988653 56678888888888899999999977766653 455777888888999
Q ss_pred chhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 012360 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175 (465)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 175 (465)
+.|++.++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..++.++.+.|++++|.+.++
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 9999888887774 366678888999999999999999999887 478889999999999999999998
Q ss_pred HhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHH
Q 012360 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK 255 (465)
Q Consensus 176 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 255 (465)
+. .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|++++|..+++...... +.....|
T Consensus 173 KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~f 244 (449)
T 1b89_A 173 KA--NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMF 244 (449)
T ss_dssp HH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHH
T ss_pred Hc--CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHH
Confidence 88 37888999999999999999985544432 2233335567788889999999999998887665 5567777
Q ss_pred HHHHHHHHhc--CCHHHHHHHHhcCCC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012360 256 TALIDMYSKC--GSLEEALVTFYKTDC--------KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325 (465)
Q Consensus 256 ~~l~~~~~~~--~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 325 (465)
+.+..+|++- +++.+.++.|..-.. .+...|..+...|...++++.|... |.+. +|+...-..+.
T Consensus 245 tel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~ 319 (449)
T 1b89_A 245 TELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFK 319 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHH
Confidence 7777777763 466667777754332 2567899999999999999988764 4444 33322222333
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH-------------HHHHHhcCCHHHHHHHHHhCCCCCccchHHHH
Q 012360 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL-------------VDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392 (465)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 392 (465)
....+..+.+--.+...-.... .|. ..+.| +..+.+.|+..-+...+..++...+..+-.++
T Consensus 320 ~~~~kv~n~elyYkai~fyl~~---~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vneal 394 (449)
T 1b89_A 320 DIITKVANVELYYRAIQFYLEF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESL 394 (449)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhchhHHHHHHHHHHHHHhc---CHH--HHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333444433322222222211 122 23333 34444445444444444444433344444555
Q ss_pred HHHHHhcCChHHHHHHH
Q 012360 393 LSACITYSEFDLGKKVA 409 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~ 409 (465)
-..|....|++.-....
T Consensus 395 n~l~ieeed~~~lr~si 411 (449)
T 1b89_A 395 NNLFITEEDYQALRTSI 411 (449)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 56666777765544433
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=2.7e-18 Score=150.10 Aligned_cols=269 Identities=8% Similarity=0.011 Sum_probs=209.1
Q ss_pred HHHHhcCChHHHHHHHHHhhcCC----hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhH
Q 012360 159 NGYIDMELVDLAREVFDEIVDKD----IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234 (465)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 234 (465)
+-....|++..|+..++.....+ ......+.++|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 44456677777777777654432 234455678889999999888766542 3556777888888888899999
Q ss_pred hHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012360 235 YGRLVHRFILQNNI-TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313 (465)
Q Consensus 235 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 313 (465)
+|.+.++++...+. +.+...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|...++++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 99999999887764 34566777788999999999999999998 567788999999999999999999999999987
Q ss_pred CCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccch
Q 012360 314 IKPNEATF---VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFIS 388 (465)
Q Consensus 314 ~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~ 388 (465)
.|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++.. .| ++.+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4653211 12334444568999999999999963 456888999999999999999999999998654 34 7778
Q ss_pred HHHHHHHHHhcCChHH-HHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHH
Q 012360 389 YKALLSACITYSEFDL-GKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 441 (465)
+..++..+...|+.++ +.++++++++.+|+++.+. +...+.+.++++..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 9999999999999876 6789999999999998733 34445555555443
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=3.2e-19 Score=159.19 Aligned_cols=373 Identities=12% Similarity=0.093 Sum_probs=163.7
Q ss_pred HccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHH
Q 012360 29 GRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHC 108 (465)
Q Consensus 29 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 108 (465)
-+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3668899999999999665 49999999999999999999999753 577799999999999999999999888
Q ss_pred HHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHH
Q 012360 109 YATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188 (465)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 188 (465)
...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+ ..|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp -------------------------CHHHHTTTTT----CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 77764 4557788899999999999999988875 477789999999999999999999999988 378999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 012360 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
+.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +...+.-...++..|.+.|.+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCH
Confidence 99999999999999999988 2678999999999999999999654443 223334455688888999999
Q ss_pred HHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 012360 269 EEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQMER-KGIKP------NEATFVSVLAACRHSGLITEGC 338 (465)
Q Consensus 269 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~g~~p------~~~~~~~l~~~~~~~~~~~~a~ 338 (465)
++|..+++.... .....|+-+.-+|++- ++++..+.++.-.. -+++| +...|.-+.-.|.+.++++.|.
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 999888887553 2455677777777664 33443333332221 22233 2345677777777778888776
Q ss_pred HHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHH---HHHHHHHhCCCCCccchHHHHH-------------HHHHhcCCh
Q 012360 339 QLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY---QAEEFIKIMPAEDKFISYKALL-------------SACITYSEF 402 (465)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~l~-------------~~~~~~~~~ 402 (465)
...-+-. |+..-...+.+...+..+.+ +|..++- ...+..++.|+ ..+.+.|+.
T Consensus 303 ~tm~~h~------~~a~~~~~f~~~~~kv~n~elyYkai~fyl----~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l 372 (449)
T 1b89_A 303 ITMMNHP------TDAWKEGQFKDIITKVANVELYYRAIQFYL----EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQL 372 (449)
T ss_dssp HHHHHST------TTTCCHHHHHHHHHHCSSTHHHHHHHHHHH----HHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCT
T ss_pred HHHHhCC------hhhhhhHHHHHHHhchhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhccCcHHHHHHHHHcCCc
Confidence 6443332 22111122222222222222 2222221 01122233333 444455555
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 012360 403 DLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 403 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
.-+...+..+.. -++..+-..+-..|...++++.-+.-.+
T Consensus 373 ~l~~~yl~~v~~--~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 373 PLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp TTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 555555544332 3455566778888888888887666554
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=5.1e-17 Score=155.34 Aligned_cols=373 Identities=9% Similarity=0.038 Sum_probs=244.2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHH
Q 012360 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLL 127 (465)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (465)
+..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|+++++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5667777777 466788888888888887642 3344567777777777788888888888877653 45556665554
Q ss_pred HH-HhCCChHHHHH----HHHhh----CCCC-CchhHHHHHHHHHh---------cCChHHHHHHHHHhhc-CCh---HH
Q 012360 128 MY-AKCKEMDEALR----LFDEM----GSRR-NIVSLNILINGYID---------MELVDLAREVFDEIVD-KDI---VL 184 (465)
Q Consensus 128 ~~-~~~g~~~~A~~----~~~~~----~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~-~~~---~~ 184 (465)
.. ...|+.+.|.+ +|+.. |..| +...|...+..... .|+++.|..+|++... |.. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 22 34566666554 44443 3333 33455555554443 4566666666666543 111 11
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHH------HcC---CCCC----
Q 012360 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL------QNN---ITQD---- 251 (465)
Q Consensus 185 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~---~~~~---- 251 (465)
|..........| ..+...++. ...+++..|..+++... +.. ++|+
T Consensus 168 ~~~~~~~e~~~~--------------------~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 168 WRDYNKYEEGIN--------------------IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHC--------------------HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHhhc--------------------hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 111111000000 001111111 23466777777766532 111 2333
Q ss_pred ----hhHHHHHHHHHHhc----CCH----HHHHHHHhcCC---CCChhhHHHHHHHHHH-------cCChH-------HH
Q 012360 252 ----AFVKTALIDMYSKC----GSL----EEALVTFYKTD---CKDVVTWTTMIEGLAN-------YGLGN-------EA 302 (465)
Q Consensus 252 ----~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~---~~~~~~~~~l~~~~~~-------~~~~~-------~a 302 (465)
...|...+...... ++. ..+..+|++.. +.++..|..++..+.+ .|+++ +|
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 23444444333221 222 36667777655 3467788888888776 68887 89
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-h-hhHHHHHHHHHhcCCHHHHHHHHHh
Q 012360 303 LRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-I-EHFVCLVDLLSRAGLLYQAEEFIKI 379 (465)
Q Consensus 303 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (465)
..++++..+. +.| +...+..++..+.+.|++++|..+|+++.+. +|+ . ..|..++..+.+.|++++|.++|++
T Consensus 306 ~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 306 ANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999998862 245 4678888999999999999999999999953 454 2 5788899999999999999999998
Q ss_pred CCCCC--ccchHHHHHHH-HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 380 MPAED--KFISYKALLSA-CITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 380 ~~~~~--~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
....+ +...|...+.. +...|++++|..+|+++++..|+++.+|..++..+.+.|+.++|+.++++....+
T Consensus 382 Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 382 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 76533 22333332222 3368999999999999999999999999999999999999999999999987753
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=8.2e-17 Score=160.13 Aligned_cols=377 Identities=10% Similarity=0.032 Sum_probs=263.4
Q ss_pred cchhhhHHHHHHHccCChHHHHHHhccCC-CC-----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHH
Q 012360 17 DIYVGNSLIHFYGRMALFTDARVLFDKMP-FR-----DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90 (465)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 90 (465)
++.--...+.+|...|.+.+|+++++++. .+ +....+.++.+..+. +..+..+..++.... + ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 44555666777778888888888888766 22 224455566666665 556666666555421 1 2335
Q ss_pred HHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHH-hCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHH
Q 012360 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA-KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169 (465)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 169 (465)
...+...|.+++|..+|++... +...+..+. ..|++++|.++.++. -+..+|..+..++...|++++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~---------~~~A~~VLie~i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV---------NTSAVQVLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC---------HHHHHHHHHHHHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCHHH
Confidence 6667778888888888877521 111122222 667888888888775 346678888888888888888
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC
Q 012360 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249 (465)
Q Consensus 170 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 249 (465)
|.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.+..+|++.++++....+. + .
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 88888664 567777888888888888888888888776643 33333334777788887777533332 2 3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012360 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329 (465)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 329 (465)
++...+..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+-.+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 45556667888888888888888888774 47888888888888888888888765 35678888888888
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHh--cCChHHH
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACIT--YSEFDLG 405 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~--~~~~~~a 405 (465)
..|++..|......+. .++..+..++..|.+.|.+++|+.+++.... ++ ....|..+...+++ -++..++
T Consensus 1262 e~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 8888888877665432 3455677888889999999999999987644 22 45567666666665 3455666
Q ss_pred HHHHHHHHHhCC-----CCchhHHHHHHHHhhcCChHHHHH
Q 012360 406 KKVANNMMKLGN-----QSHEAYVLLSNFYALEGHWTEVAE 441 (465)
Q Consensus 406 ~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 441 (465)
.+.|..-....| .+...|..+...|.+.|+++.|..
T Consensus 1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 666665555444 566778899999999999998873
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=4.6e-19 Score=161.30 Aligned_cols=271 Identities=9% Similarity=-0.005 Sum_probs=196.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012360 150 NIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226 (465)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 226 (465)
+...+..+...+.+.|++++|.+.|+++.. .+..++..+...+...|++++|...|+++.+.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 445577777778888888888888877743 356677777777888888888888887777653 2345666677777
Q ss_pred hccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHH
Q 012360 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306 (465)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 306 (465)
+...|++++|...++++.+.... +...+..+. .....+..+...+...|++++|...+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPK-YKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH-HHCC----------------------------------------CCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCcc-chHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 77777777777777777664310 011111000 11223445677788889999999999
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC
Q 012360 307 YQMERKGIK-PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED 384 (465)
Q Consensus 307 ~~m~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 384 (465)
+++.+.... ++..++..+...+...|++++|+..++++.+. .+.+..++..+..+|...|++++|...|+++.. .|
T Consensus 201 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278 (365)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 998886321 15778889999999999999999999999853 345688899999999999999999999988754 33
Q ss_pred -ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC------------CchhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 385 -KFISYKALLSACITYSEFDLGKKVANNMMKLGNQ------------SHEAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 385 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
+..++..++.+|...|++++|+..++++++..|. +..+|..++.++...|+.+.+..+.++
T Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 5778999999999999999999999999998876 366799999999999999999888764
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=3.1e-18 Score=155.93 Aligned_cols=247 Identities=13% Similarity=0.074 Sum_probs=144.7
Q ss_pred hhhhhhhhH-HHHHHHHhCCc---cchhhHHHHHHHHHhCCChHHHHHHHHhh-CC-CCCchhHHHHHHHHHhcCChHHH
Q 012360 97 LEKLHYGKT-VHCYATKVGLE---YMLNMENALLLMYAKCKEMDEALRLFDEM-GS-RRNIVSLNILINGYIDMELVDLA 170 (465)
Q Consensus 97 ~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a 170 (465)
.|+++.|.. .++...+.... .+...+..+...+.+.|++++|...|+++ .. +.+..++..+...+...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 466677766 66554433211 13456777888888888888888888887 32 34566788888888888888888
Q ss_pred HHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHhccchh
Q 012360 171 REVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS---------------VLSACSSLSN 232 (465)
Q Consensus 171 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~~~ 232 (465)
.+.|++... .+..++..+...+...|++++|...++++.+.... +...+.. .+..+...|+
T Consensus 118 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (368)
T 1fch_A 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhccc
Confidence 888887743 36778888999999999999999999998875422 1112111 1222336667
Q ss_pred hHhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 012360 233 LQYGRLVHRFILQNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQ 308 (465)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 308 (465)
+++|...++.+.+..... +..++..+..++...|++++|...|+++. +.+...+..+...+...|++++|...+++
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 276 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777666643211 34555555555555555555555555432 22344455555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 309 m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
+.+.. +.+...+..+..++.+.|++++|...|+++.
T Consensus 277 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 277 ALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 54431 1223444555555555555555555555544
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=3.1e-17 Score=154.69 Aligned_cols=388 Identities=10% Similarity=-0.047 Sum_probs=197.4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHc-----C--CCC-chhhHHHHHHHhcchhhhhhhhHHHHHHHHhCC----
Q 012360 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-----G--IVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGL---- 115 (465)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 115 (465)
....||.|..++...|++++|++.|++..+. + ..| ...+|..+...|...|++++|...+++..+...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456777878888888888888888776431 1 112 234566666667777777777777666654310
Q ss_pred --cc-chhhHHHHHHHHHh--CCChHHHHHHHHhh-CCCCCc-hhHHHHHHH---HHhcCChHHHHHHHHHhhc--C-Ch
Q 012360 116 --EY-MLNMENALLLMYAK--CKEMDEALRLFDEM-GSRRNI-VSLNILING---YIDMELVDLAREVFDEIVD--K-DI 182 (465)
Q Consensus 116 --~~-~~~~~~~l~~~~~~--~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~--~-~~ 182 (465)
.+ ...++.....++.. .+++++|+..|++. ...|+. ..+..+... +...++.++|++.+++..+ | +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 01 12233333333332 33566666666665 333332 223333222 2233444555555554422 2 33
Q ss_pred HHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHH
Q 012360 183 VLWRSMMHGCVK----AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTAL 258 (465)
Q Consensus 183 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 258 (465)
..+..+...+.. .|++++|.+.+++..... +.+..++..+...+...|++++|...+++..+.. +.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 344433333332 234555555555555432 2234445555555555666666666665555543 2233444444
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012360 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338 (465)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 338 (465)
..+|...+....+.. .. .........+..+.|...+++..+.. +.+..++..+...+...|++++|+
T Consensus 288 g~~y~~~~~~~~~~~------~~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLR------EN------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhHH------HH------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHH
Confidence 444332111100000 00 00000111234577888888877652 224467788889999999999999
Q ss_pred HHHHHhhcCCCCCCCh--hhHHHHHH-HHHhcCCHHHHHHHHHhCCC-CCccchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 339 QLFRRMGGVYRVQPTI--EHFVCLVD-LLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 339 ~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
..|+++.+. ...+.. ..+..+.. .+...|++++|+..|++... .|+.... .+....+.+++++.++
T Consensus 355 ~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~---------~~~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 355 YYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK---------EKMKDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH---------HHHHHHHHHHHHHHHH
Confidence 999998753 222211 12233332 24577899999998887543 3433222 1223456677888889
Q ss_pred hCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCeee
Q 012360 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460 (465)
Q Consensus 415 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 460 (465)
.+|+++.+|..++.+|...|++++|.+.+++..+.+.......+|+
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999999999999999988766555555553
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=1.9e-18 Score=154.53 Aligned_cols=274 Identities=9% Similarity=-0.026 Sum_probs=194.7
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012360 151 IVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227 (465)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (465)
...+..+...+...|++++|..+|+++.. .+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34456666677777777777777776633 245566666777777777777777777766642 22455566666666
Q ss_pred ccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHH-HH-HHHHcCChHHHHHH
Q 012360 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM-IE-GLANYGLGNEALRV 305 (465)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a~~~ 305 (465)
...|++++|...++.+.+.... +...+..+.... ++......+ .. .+...|++++|...
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------CCTTSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 6666777777666666654311 111111111000 011111112 22 36677889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--C
Q 012360 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--E 383 (465)
Q Consensus 306 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 383 (465)
++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.. +
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 99988763 336778888999999999999999999999853 344678889999999999999999999988644 3
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC------------CchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ------------SHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 384 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
.+..++..++..+...|++++|.+.++++++..|. ++..+..++.++...|++++|..++++..
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 36778999999999999999999999999999998 68889999999999999999999987543
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=2.6e-18 Score=150.23 Aligned_cols=247 Identities=8% Similarity=0.018 Sum_probs=202.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 012360 189 MHGCVKAKQPEEALELFKKMIDEGVTPDE--EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266 (465)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (465)
++.....|+++.|+..++.... ..|+. .....+.++|...|+++.|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4556778999999999987654 34443 3556678899999999999986654 24567788889999999999
Q ss_pred CHHHHHHHHhcCC----CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012360 267 SLEEALVTFYKTD----CK-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341 (465)
Q Consensus 267 ~~~~a~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 341 (465)
+.++|++.++++. .| +...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998753 24 566777888999999999999999987 457788999999999999999999999
Q ss_pred HHhhcCCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 342 RRMGGVYRVQPTIEHF---VCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 342 ~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
+++.+. .|+.... ..++..+...|++++|..+|+++.. ++++..++.++.++.+.|++++|++.++++++..
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999854 3553211 2233445556999999999998854 3477789999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCChHH-HHHHHHHHHHhc
Q 012360 417 NQSHEAYVLLSNFYALEGHWTE-VAEARRNMKELQ 450 (465)
Q Consensus 417 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 450 (465)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986 578888887653
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=8.4e-16 Score=153.02 Aligned_cols=348 Identities=11% Similarity=0.091 Sum_probs=266.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC--CCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHH
Q 012360 53 NTLMSIYNDFSDSGEVLILFKQLIFEGI--VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130 (465)
Q Consensus 53 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (465)
...+++|...|.+.+|+++|++..-.+- .-+...-+.++.+..+. +..+..+..+..... ....+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHH
Confidence 4456678888888999999988874321 01223444455555555 445555555444321 1344677888
Q ss_pred hCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 012360 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210 (465)
Q Consensus 131 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 210 (465)
..|.+++|..+|++.+ -.....+.+ +-..+++++|.++.++.. +..+|..+..++...|++++|++.|.+.
T Consensus 1061 ~lglyEEAf~IYkKa~--~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD--VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred hCCCHHHHHHHHHHcC--CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 8999999999999974 122222223 227889999999998774 4678889999999999999999999664
Q ss_pred cCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHH
Q 012360 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290 (465)
Q Consensus 211 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 290 (465)
-|...|..++.++.+.|++++|.+++....+.. +++...+.++.+|++.+++++...+. ..++...|..+.
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVG 1202 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHH
Confidence 366788889999999999999999999888765 34444456999999999998655553 345667777899
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCH
Q 012360 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 370 (465)
..|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..+|...|++
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHH
Confidence 9999999999999999984 488999999999999999999999874 347899999999999999
Q ss_pred HHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhc--CChHHHHHHHH
Q 012360 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE--GHWTEVAEARR 444 (465)
Q Consensus 371 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 444 (465)
..|......+.. ++..+..++..|.+.|.+++|+.+++..+.++|.+...|..|+.+|.+. ++..++.++|.
T Consensus 1267 ~LA~~cgl~Iiv--~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1267 RLAQMCGLHIVV--HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHhhhc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999998776543 4556778999999999999999999999999999999998888888765 34444554444
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=7.7e-18 Score=153.17 Aligned_cols=257 Identities=14% Similarity=0.059 Sum_probs=168.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 012360 119 LNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGCV 193 (465)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 193 (465)
...+..+...+.+.|++++|...|+++ ..+.+..+|..+...+...|++++|.+.|++... .+..++..+...|.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 344666777777777777777777776 2233556777777777788888888888877643 35678888888899
Q ss_pred HcCChhHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC-CChhHHHHHHHH
Q 012360 194 KAKQPEEALELFKKMIDEGVTPD-----------EEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT-QDAFVKTALIDM 261 (465)
Q Consensus 194 ~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 261 (465)
..|++++|...++++.+.. |+ ...+..+...+...|++++|..+++++.+.... .+..++..+...
T Consensus 145 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 9999999999998887742 22 122334467788899999999999998886422 156677777777
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 012360 262 YSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEG 337 (465)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a 337 (465)
|...|++++|...|+++. +.+..+|..+...|...|++++|...|+++.+. .| +..++..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHH
Confidence 777777777777776644 335567777777777777777777777777665 33 356667777777777777777
Q ss_pred HHHHHHhhcCCCC--C--------CChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 012360 338 CQLFRRMGGVYRV--Q--------PTIEHFVCLVDLLSRAGLLYQAEEFIKI 379 (465)
Q Consensus 338 ~~~~~~~~~~~~~--~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (465)
...|+++.+...- . .+...|..+..++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7777776532100 0 0234555555556666666555555544
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.5e-16 Score=148.52 Aligned_cols=383 Identities=10% Similarity=-0.022 Sum_probs=235.0
Q ss_pred CCcchhhhHHHHHHHccCChHHHHHHhccCC-----------CC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHc----
Q 012360 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMP-----------FR-DVGSWNTLMSIYNDFSDSGEVLILFKQLIFE---- 78 (465)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---- 78 (465)
+.....||.|...+...|+.++|++.|++.. .+ ...+|+.+..+|...|++++|...+++....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 3456789999999999999999999998643 12 3457999999999999999999999987642
Q ss_pred -C-CCC-chhhHHHHHHHhcc--hhhhhhhhHHHHHHHHhCCccchhhHHHHHHH---HHhCCChHHHHHHHHhh-CCCC
Q 012360 79 -G-IVA-DKITLVILFSACAR--LEKLHYGKTVHCYATKVGLEYMLNMENALLLM---YAKCKEMDEALRLFDEM-GSRR 149 (465)
Q Consensus 79 -~-~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~-~~~~ 149 (465)
+ ..+ ...++.....++.. .+++++|...|++..+.. +.+...+..+..+ +...++.++|++.+++. ...|
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1 111 23355555444443 468999999999999875 3344445444444 44568888999988876 3344
Q ss_pred -CchhHHHHHHHHH----hcCChHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 012360 150 -NIVSLNILINGYI----DMELVDLAREVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMV 221 (465)
Q Consensus 150 -~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 221 (465)
+..++..+...+. ..+++++|.+.+++... .+..++..+...|...|++++|...+++..+.. +-+..++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 4455655555544 35678899999988743 367789999999999999999999999998863 22445555
Q ss_pred HHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCC
Q 012360 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGL 298 (465)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 298 (465)
.+...|...+.... ... ...........+.++.|...|++.. +.+...+..+...+...|+
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 55444432211111 000 0001111111233566777766543 3456788899999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 012360 299 GNEALRVFYQMERKGIKPNEA--TFVSVLA-ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375 (465)
Q Consensus 299 ~~~a~~~~~~m~~~g~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 375 (465)
+++|...|++..+....|... .+..+.. .....|++++|+..|++..+ +.|+........ ..+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHH
Confidence 999999999998874333221 2233332 23467999999999999984 345533222222 23334
Q ss_pred HHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 012360 376 FIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427 (465)
Q Consensus 376 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 427 (465)
+++.... +.+..+|..++..+...|++++|++.|+++++.+|.+|.+...++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 4443321 347789999999999999999999999999999988887665554
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.7e-16 Score=141.71 Aligned_cols=257 Identities=14% Similarity=0.047 Sum_probs=172.4
Q ss_pred chhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHH
Q 012360 118 MLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGC 192 (465)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 192 (465)
+...+..+...+...|++++|..+|+++ ..+.+..++..+...+...|++++|.+.+++... .+..++..+...+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3344556666777777777777777776 2233555667777777777777777777777633 3567788888888
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HhccchhhHhHHHHHHHHHHcCCCCChhHHHH
Q 012360 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSV--------------LS-ACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257 (465)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (465)
...|++++|...++++.+.... +...+..+ .. .+...|++++|...++.+.+.. +.+..++..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 8899999999999888875322 22222222 22 3778889999999999888765 345677777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 012360 258 LIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 334 (465)
+...+...|++++|...++++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 7778888888888877776644 2345567777777777777777777777766652 22456666777777777777
Q ss_pred HHHHHHHHHhhcCCCCCC-------------ChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 012360 335 TEGCQLFRRMGGVYRVQP-------------TIEHFVCLVDLLSRAGLLYQAEEFIKIM 380 (465)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (465)
++|...++++... .| +...+..+..++.+.|++++|..++++.
T Consensus 257 ~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777777776642 12 2455666666666666666666666544
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.76 E-value=1.9e-16 Score=147.51 Aligned_cols=376 Identities=9% Similarity=-0.073 Sum_probs=217.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhh---hhhhHHHHHHHHhCCccchhhHHHHHHHHHhC
Q 012360 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKL---HYGKTVHCYATKVGLEYMLNMENALLLMYAKC 132 (465)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (465)
...+.+.|++++|.+.|++..+.| +...+..+...+...|+. ++|..+|+...+. +...+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 334444555555555555554443 112222233333334444 4555555554432 233333344433333
Q ss_pred C-----ChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHH---HHHHHHHhh-cCChHHHHHHHHHHHHcCChhHHHH
Q 012360 133 K-----EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL---AREVFDEIV-DKDIVLWRSMMHGCVKAKQPEEALE 203 (465)
Q Consensus 133 g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~ 203 (465)
| ++++|...|++.-..-+..++..|...|...+..++ +.+.+.... ..+...+..+...|...+.++++..
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHH
Confidence 3 445555555554112222344445555544433222 233333332 2245566666677777665555544
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhccch---hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc----CCHHHHHHHHh
Q 012360 204 LFKKMIDEGVTPDEEVMVSVLSACSSLS---NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC----GSLEEALVTFY 276 (465)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~ 276 (465)
....+.+.-...+...+..+...|...| +.++|...|+...+.| +++...+..+...|... +++++|...|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 4333332212222235666666666677 7778888888777776 34444445566666554 68888888887
Q ss_pred cCCCCChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhhcCC
Q 012360 277 KTDCKDVVTWTTMIEG-L--ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG-----LITEGCQLFRRMGGVY 348 (465)
Q Consensus 277 ~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~ 348 (465)
+..+.++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|..+|++.. .
T Consensus 242 ~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~- 315 (452)
T 3e4b_A 242 KIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G- 315 (452)
T ss_dssp HHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-
T ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-
Confidence 7663356677777766 3 45789999999999988876 5667777777776 45 9999999999887 2
Q ss_pred CCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCccchHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCc
Q 012360 349 RVQPTIEHFVCLVDLLSR----AGLLYQAEEFIKIMPAEDKFISYKALLSACIT----YSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 349 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
-+...+..|...|.. ..++++|.++|++....+++.....|...|.. ..+.++|...|+++.+.++...
T Consensus 316 ---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a 392 (452)
T 3e4b_A 316 ---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEA 392 (452)
T ss_dssp ---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHH
T ss_pred ---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 356677778877776 34899999999988777788888888888874 4589999999999999886655
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 421 EAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 421 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
......+......++..+|..+.++..+
T Consensus 393 ~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 393 NDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4344444444455677778888887654
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2e-16 Score=136.20 Aligned_cols=228 Identities=10% Similarity=-0.045 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC--CChhHHHHHH
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT--QDAFVKTALI 259 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 259 (465)
...+..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|...++...+.... ++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 3456667777777777777777777777665 55666666667777777777777777766553211 0100
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012360 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339 (465)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 339 (465)
.....+..+...+...|++++|...+++..+. .|+. ..+...|++++|..
T Consensus 77 ---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 77 ---------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELK 126 (258)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHH
Confidence 00234455555566666666666666666554 3332 23445566677777
Q ss_pred HHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
.++++... .+.+...+..+...+...|++++|.+.++++.. +.+..+|..++..+...|++++|+..++++++..|
T Consensus 127 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 127 KAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 77776642 223455666667777777777777777766533 23456677777777777777777777777777777
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 418 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+++..+..++.++...|++++|...+++..+.
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77777777777777777777777777766543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.7e-16 Score=136.64 Aligned_cols=235 Identities=12% Similarity=0.041 Sum_probs=178.3
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhhc--CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCC----HHHHHH
Q 012360 151 IVSLNILINGYIDMELVDLAREVFDEIVD--KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV--TPD----EEVMVS 222 (465)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 222 (465)
...+..+...+...|++++|...|++... .+...+..+...+...|++++|...+++..+... .|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45678889999999999999999998743 6788999999999999999999999999887421 122 456667
Q ss_pred HHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHH
Q 012360 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302 (465)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 302 (465)
+...+...|++++|...++.+.+.. |+. ..+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------------------------------------~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA--------------------------------------DILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------HHHHHHhHHHHH
Confidence 7777777777777777777776643 221 224445667777
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 303 LRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 303 ~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
...++++... .|+ ...+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|...+++..
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777765 343 456777778888888888888888888753 24456778888888888888888888888764
Q ss_pred C--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC------CCCchhHHHHHHH
Q 012360 382 A--EDKFISYKALLSACITYSEFDLGKKVANNMMKLG------NQSHEAYVLLSNF 429 (465)
Q Consensus 382 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 429 (465)
. +.+...|..+...+...|++++|...++++++.. |.+..++..+..+
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 3 3356778888999999999999999999999988 7777666655543
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=1.9e-16 Score=132.25 Aligned_cols=195 Identities=16% Similarity=0.062 Sum_probs=152.3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 012360 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSV 324 (465)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 324 (465)
+++...+..+...+...|++++|...|++.. +.+...+..+...+.+.|++++|...+++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4566677778888888888888888888754 336678888888899999999999999998877 45 45778888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchHHHH
Q 012360 325 LAACRHS-----------GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKAL 392 (465)
Q Consensus 325 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l 392 (465)
..++... |++++|+..++++.+. .+.+...+..+..++...|++++|...|++... ..++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 9999999999999853 234677888999999999999999999987632 2567788999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
..++...|++++|+..|+++++..|+++.++..++.++.+.|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988653
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.7e-18 Score=166.96 Aligned_cols=145 Identities=10% Similarity=0.039 Sum_probs=122.5
Q ss_pred cchhhhHHHHHHHccCChHHHHHHhccCC-------CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHH
Q 012360 17 DIYVGNSLIHFYGRMALFTDARVLFDKMP-------FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89 (465)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 89 (465)
-..+||+||++||+.|++++|..+|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999997753 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcchhhh-hhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCC------chhHHHHHHH
Q 012360 90 LFSACARLEKL-HYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRN------IVSLNILING 160 (465)
Q Consensus 90 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~------~~~~~~l~~~ 160 (465)
+|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+. .+++..+++ +..|+ ..+...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999985 78999999999999999999999998776654 444445555 22222 4455566677
Q ss_pred HHhcC
Q 012360 161 YIDME 165 (465)
Q Consensus 161 ~~~~~ 165 (465)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 77554
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=1e-15 Score=133.17 Aligned_cols=240 Identities=10% Similarity=-0.073 Sum_probs=163.5
Q ss_pred cCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012360 195 AKQPEEALELFKKMIDEGVT---PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271 (465)
Q Consensus 195 ~g~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 271 (465)
.|++++|+..++++.+.... .+..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34556666666665553211 123344555555566666666666666665543 33455666666666777777777
Q ss_pred HHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 012360 272 LVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348 (465)
Q Consensus 272 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 348 (465)
...|+++. +.+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 76666544 235667778888888888889999988888876 455444444555556778999999999887753
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC------ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh
Q 012360 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED------KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422 (465)
Q Consensus 349 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 422 (465)
.+++... ..++..+...++.++|.+.++...... +..++..++..+...|++++|...++++++.+|++..
T Consensus 174 -~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 250 (275)
T 1xnf_A 174 -SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV- 250 (275)
T ss_dssp -SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH-
T ss_pred -CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH-
Confidence 2334333 347777788888889999888776532 2577888999999999999999999999999987755
Q ss_pred HHHHHHHHhhcCChHHHHHHH
Q 012360 423 YVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 423 ~~~l~~~~~~~g~~~~a~~~~ 443 (465)
..+.++...|++++|.+.+
T Consensus 251 --~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 --EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHhhHHHH
Confidence 3467788889999988765
No 41
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=3.6e-17 Score=157.84 Aligned_cols=147 Identities=14% Similarity=0.077 Sum_probs=113.6
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHh-------hcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 012360 151 IVSLNILINGYIDMELVDLAREVFDEI-------VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223 (465)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 223 (465)
..||+++|++|++.|++++|.++|++| ..||+.+||+||++|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 347888888888888888888888665 3579999999999999999999999999999999999999999999
Q ss_pred HHHhccchhh-HhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHcC
Q 012360 224 LSACSSLSNL-QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-----DVVTWTTMIEGLANYG 297 (465)
Q Consensus 224 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 297 (465)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++......+ .+.+...|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999998874 788899999999999999999998887776665444444443333321 1334444555555443
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=3.2e-15 Score=129.75 Aligned_cols=245 Identities=7% Similarity=-0.075 Sum_probs=121.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhc
Q 012360 154 LNILINGYIDMELVDLAREVFDEIVD--K-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD--EEVMVSVLSACS 228 (465)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~ 228 (465)
+......+...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+.+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33444455555555555555555422 1 233455555555555555555555555554221111 112444444445
Q ss_pred cchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 012360 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308 (465)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 308 (465)
..|++++|...++...+.. +.+..++..+..+| ...|++++|...+++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~-------------------------------~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYF-------------------------------YNKGNFPLAIQYMEK 133 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH-------------------------------HHTTCHHHHHHHHGG
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHH-------------------------------HHccCHHHHHHHHHH
Confidence 5555555555555554432 22233444444444 444444444444444
Q ss_pred HHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHhCCC--
Q 012360 309 MERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL---LYQAEEFIKIMPA-- 382 (465)
Q Consensus 309 m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-- 382 (465)
..+. .| +...+..+...+...+++++|...|+++.+. .+.+...+..+..++...|+ +++|...+++...
T Consensus 134 al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 134 QIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp GCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred Hhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 4333 22 2333333331222233555555555555431 12223444444445554444 4444444443321
Q ss_pred --CCc------cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 383 --EDK------FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 383 --~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
.|+ ..+|..+...|...|++++|.+.++++++.+|+++.++..+.......+
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 122 1356778888888999999999999999999999887777776665544
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=3.1e-14 Score=123.59 Aligned_cols=226 Identities=10% Similarity=-0.067 Sum_probs=126.5
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----chhhHhHHHHHHHHHHcCCCCChhHHH
Q 012360 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS----LSNLQYGRLVHRFILQNNITQDAFVKT 256 (465)
Q Consensus 181 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (465)
+..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566667777777777888888887777762 234455556666666 777777777777776654 455555
Q ss_pred HHHHHHHh----cCCHHHHHHHHhcCCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012360 257 ALIDMYSK----CGSLEEALVTFYKTDC-KDVVTWTTMIEGLAN----YGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327 (465)
Q Consensus 257 ~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 327 (465)
.+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 6666666666554332 244455555555555 555555555555555543 33444444455
Q ss_pred HHh----cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCccchHHHHHHHHHh-
Q 012360 328 CRH----SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR----AGLLYQAEEFIKIMPAEDKFISYKALLSACIT- 398 (465)
Q Consensus 328 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~- 398 (465)
+.. .+++++|+..|++..+. .+...+..+...|.. .+++++|.+.+++.....+...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 544 55555555555555432 123444445555555 55555555555544333334444445555554
Q ss_pred ---cCChHHHHHHHHHHHHhCCCC
Q 012360 399 ---YSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 399 ---~~~~~~a~~~~~~~~~~~p~~ 419 (465)
.+++++|++.++++.+.+|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 555555555555555555443
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=3.6e-14 Score=123.19 Aligned_cols=224 Identities=10% Similarity=-0.055 Sum_probs=183.0
Q ss_pred CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhhHHHHH
Q 012360 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK----CGSLEEALVTFYKTDC-KDVVTWTTMI 290 (465)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~ 290 (465)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+ .++..+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4556667777788888999999999988883 345677788888888 8999999999987553 3677888888
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHH
Q 012360 291 EGLAN----YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH----SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362 (465)
Q Consensus 291 ~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (465)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 88888 899999999999988874 66778888888888 89999999999998864 2 5667778888
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCccchHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh--
Q 012360 363 LLSR----AGLLYQAEEFIKIMPAEDKFISYKALLSACIT----YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL-- 432 (465)
Q Consensus 363 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 432 (465)
.|.. .+++++|.+.+++.....++..+..+...+.. .+++++|++.++++.+.+| +..+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8887 88999999999887665667788888888888 8999999999999988876 5668888999988
Q ss_pred --cCChHHHHHHHHHHHHhcC
Q 012360 433 --EGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 433 --~g~~~~a~~~~~~~~~~~~ 451 (465)
.+++++|..++++..+.+.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 8999999999988776553
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=3.5e-15 Score=139.00 Aligned_cols=343 Identities=9% Similarity=-0.024 Sum_probs=236.2
Q ss_pred HHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh---HHHHHHHHhhCCCCCchhHHHHHHHHHhcC-
Q 012360 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM---DEALRLFDEMGSRRNIVSLNILINGYIDME- 165 (465)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~- 165 (465)
+...+.+.|++++|.++|+...+.| +...+..+...|...|+. ++|...|++.-.. +...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCC
Confidence 5667778999999999999998876 333444566666777888 9999999998423 7777888877666655
Q ss_pred ----ChHHHHHHHHHhhcC-ChHHHHHHHHHHHHcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHH
Q 012360 166 ----LVDLAREVFDEIVDK-DIVLWRSMMHGCVKAKQPE---EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237 (465)
Q Consensus 166 ----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (465)
+.++|...|++...+ +...+..+...|...+..+ ++.+.+......|. ......+...|...+.++++.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH
Confidence 788999999988665 4557778888888776544 45555666555553 334555666666666555555
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhcCCC---CChhhHHHHHHHHHHc----CChHHHHHHHH
Q 012360 238 LVHRFILQNNITQDAFVKTALIDMYSKCG---SLEEALVTFYKTDC---KDVVTWTTMIEGLANY----GLGNEALRVFY 307 (465)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~a~~~~~ 307 (465)
.....+.+.-...++..+..+...|...| +.++|++.|++..+ ++...+..+...|... +++++|..+|+
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 44443333322334458888999999999 99999999987553 3444446777777655 79999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHh
Q 012360 308 QMERKGIKPNEATFVSVLAA-C--RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG-----LLYQAEEFIKI 379 (465)
Q Consensus 308 ~m~~~g~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~ 379 (465)
+.. .| +...+..+... + ...+++++|+.+|++..+. + +...+..|...|. .| ++++|.++|++
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 987 33 45566666666 4 5689999999999999864 3 6677788888887 55 99999999999
Q ss_pred CCCCCccchHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHHhcC
Q 012360 380 MPAEDKFISYKALLSACIT----YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL----EGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 451 (465)
.. ..++..+..|...|.. ..++++|...|+++.+.+ ++.....|+.+|.. ..+.++|..++++..+.|.
T Consensus 313 Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 313 AV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred Hh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 98 7788888889888876 349999999999998865 45568899999875 4689999999998877664
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=2.5e-14 Score=120.13 Aligned_cols=196 Identities=12% Similarity=0.003 Sum_probs=137.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 328 (465)
...+..+...+...|++++|...|+++. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 4455556666666666666666665543 2345566667777777777777777777776652 23456677777777
Q ss_pred Hhc-CCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHH
Q 012360 329 RHS-GLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDL 404 (465)
Q Consensus 329 ~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 404 (465)
... |++++|...++++.+. +..| +...+..+..++...|++++|.+.++++.. +.+...+..++..+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 778 8888888888887752 2223 356667777778888888888887776543 2345667777788888888888
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 405 GKKVANNMMKLGN-QSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 405 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
|...++++++..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888888888 77777777777888888888888888877654
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=1.8e-14 Score=124.98 Aligned_cols=224 Identities=10% Similarity=0.035 Sum_probs=164.9
Q ss_pred HHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----hhhHHHHHHHHHHc
Q 012360 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KD----VVTWTTMIEGLANY 296 (465)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~ 296 (465)
....+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...+++... ++ ...|..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344455555555555555555543 22333555566666666666666666655432 22 22477788888899
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 012360 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376 (465)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 376 (465)
|++++|...+++..+.. +.+...+..+...+...|++++|+..++++.+. .+.+...+..+...+...+++++|.+.
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988762 234578899999999999999999999999863 344677777777344455699999999
Q ss_pred HHhCCC-CC-ccchHHHHHHHHHhcCC---hHHHHHHHHHHHHhC---CCC-----chhHHHHHHHHhhcCChHHHHHHH
Q 012360 377 IKIMPA-ED-KFISYKALLSACITYSE---FDLGKKVANNMMKLG---NQS-----HEAYVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 377 ~~~~~~-~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~ 443 (465)
++++.. .| +...+..+...+...|+ +++|+..++++++.. |+. ..+|..++..|...|++++|..++
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 998754 33 56778888888888888 899999999999865 442 257889999999999999999999
Q ss_pred HHHHHhc
Q 012360 444 RNMKELQ 450 (465)
Q Consensus 444 ~~~~~~~ 450 (465)
++..+..
T Consensus 245 ~~al~~~ 251 (272)
T 3u4t_A 245 KNILALD 251 (272)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9987654
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=3.7e-15 Score=126.98 Aligned_cols=203 Identities=12% Similarity=0.046 Sum_probs=99.3
Q ss_pred HHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCCh
Q 012360 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLG 299 (465)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 299 (465)
+...+...|+++.|...++++.+.. +.+...+..+..++...|++++|...|+++. +.+...+..+...+...|++
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 107 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY 107 (243)
T ss_dssp -------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccH
Confidence 3333444444444444444444322 2233344444444444444444444444322 12344455555555556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 012360 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379 (465)
Q Consensus 300 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (465)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++
T Consensus 108 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 108 KEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666655542 224455555566666666666666666666532 223445555556666666666666666655
Q ss_pred CCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 380 MPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 380 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
+.. +.+..++..+...+...|++++|...++++++..|+++..+..+...
T Consensus 185 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 185 VTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 432 22344556666666666666666666666666666666555444433
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=2.1e-14 Score=123.08 Aligned_cols=193 Identities=12% Similarity=-0.014 Sum_probs=104.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012360 255 KTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331 (465)
Q Consensus 255 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 331 (465)
+..+...+...|++++|...|+++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHH
Confidence 3444444444444444444444332 1233445555555555555555555555555442 22344555555556666
Q ss_pred CCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHH
Q 012360 332 GLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKV 408 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~ 408 (465)
|++++|...++++... +..| +...+..+...+...|++++|.+.++++.. . .+...+..++..+...|++++|...
T Consensus 119 g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp TCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665541 1223 344455555566666666666666655432 1 2344555566666666666666666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 409 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
++++.+..|.+...+..++..+...|++++|..+++++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666655543
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=1.7e-14 Score=130.24 Aligned_cols=246 Identities=11% Similarity=0.043 Sum_probs=179.8
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchh-hHhHHHHHHHHHHcCCCCChhHHHHHHH
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN-LQYGRLVHRFILQNNITQDAFVKTALID 260 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 260 (465)
...|..+...+...|++++|++.+++.++.. +-+...|..+..++...|+ +++|+..++++++.. +-+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3456666666677777777777777776642 2245556666666666775 777777777777654 335667777777
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh-cCCHH
Q 012360 261 MYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRH-SGLIT 335 (465)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~-~~~~~ 335 (465)
++...|++++|+..|+++. ..+...|..+..++...|++++|+..++++++. .| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 7777777777777777654 346678888888888889999999999998887 44 56788888888888 56557
Q ss_pred HH-----HHHHHHhhcCCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-ccchHHHHHHHHHhcC-------
Q 012360 336 EG-----CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG--LLYQAEEFIKIMPAED-KFISYKALLSACITYS------- 400 (465)
Q Consensus 336 ~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~------- 400 (465)
+| +..++++... .+-+...|..+..++...| ++++|.+.+.++...| +...+..++..|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 4788888752 2345778888888888888 6889998888873333 5567788888888764
Q ss_pred -C-hHHHHHHHHHH-HHhCCCCchhHHHHHHHHhhc
Q 012360 401 -E-FDLGKKVANNM-MKLGNQSHEAYVLLSNFYALE 433 (465)
Q Consensus 401 -~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 433 (465)
+ .++|+++|+++ ++.+|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899999999888888877654
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=3.5e-14 Score=121.64 Aligned_cols=208 Identities=10% Similarity=0.054 Sum_probs=140.9
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHH
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (465)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 4556666666677777777777777666542 2234455555555555555666555555555432
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 012360 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQL 340 (465)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 340 (465)
+.+...+..+...+...|++++|..+++++.+.+..|+ ...+..+...+...|++++|...
T Consensus 102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 12344555566666667777777777777665323453 45667777778888888888888
Q ss_pred HHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 341 FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
++++.+. .+.+...+..+...+...|++++|...++.+.. +.+...+..+...+...|++++|.+.++++.+..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 8887753 233567777888888888888888888877643 235566778888888999999999999999999998
Q ss_pred CchhHH
Q 012360 419 SHEAYV 424 (465)
Q Consensus 419 ~~~~~~ 424 (465)
++....
T Consensus 242 ~~~~~~ 247 (252)
T 2ho1_A 242 SLEYQE 247 (252)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 877443
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=6.2e-15 Score=125.54 Aligned_cols=198 Identities=12% Similarity=0.059 Sum_probs=156.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012360 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326 (465)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 326 (465)
.....+..+...+...|++++|...|+++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 445677788888999999999999998764 3467788889999999999999999999998873 336778888999
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHH
Q 012360 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDL 404 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 404 (465)
.+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.. +.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999863 345678889999999999999999999998754 3467788999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 405 GKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 405 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
|+..++++++..|.++.++..++.++...|++++|...++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987654
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=3.1e-14 Score=118.76 Aligned_cols=194 Identities=13% Similarity=-0.034 Sum_probs=83.8
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012360 149 RNIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS 225 (465)
Q Consensus 149 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 225 (465)
++...+..+...+.+.|++++|...|++... .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3444555555555555555555555555422 134455555555555555555555555555432 112333334444
Q ss_pred Hhccc-----------hhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 012360 226 ACSSL-----------SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294 (465)
Q Consensus 226 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 294 (465)
++... |++++|...+++..+.. +.+...+..+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------------------------------P~~~~~~~~lg~~~~ 129 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN--------------------------------PRYAPLHLQRGLVYA 129 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--------------------------------cccHHHHHHHHHHHH
Confidence 44333 33333333333333221 112334444444455
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 012360 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374 (465)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 374 (465)
..|++++|...|++..+.. .+...+..+..++...|++++|+..|+++.+. .+.+...+..+..++...|++++|.
T Consensus 130 ~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 130 LLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------
T ss_pred HcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHH
Confidence 5555555555555555443 34444555555555555555555555555431 1223444445555555555555555
Q ss_pred HHHHh
Q 012360 375 EFIKI 379 (465)
Q Consensus 375 ~~~~~ 379 (465)
..+++
T Consensus 206 ~~~~~ 210 (217)
T 2pl2_A 206 RAAAL 210 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55444
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=2.8e-14 Score=123.93 Aligned_cols=236 Identities=10% Similarity=-0.086 Sum_probs=148.9
Q ss_pred CChHHHHHHHHHhhcC-------ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHH
Q 012360 165 ELVDLAREVFDEIVDK-------DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237 (465)
Q Consensus 165 ~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (465)
|++++|++.|+++... +..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4555555555555331 34456666666666777777777776666642 224556666666666677777777
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012360 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315 (465)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 315 (465)
..++.+.+.. +.+..++..+..+|...|++++|...|+++. .|+.......+..+...|++++|...+.+..... +
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~ 175 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-D 175 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 7777666653 3345666667777777777777777776654 2333333334444566688888888887776652 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchH
Q 012360 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISY 389 (465)
Q Consensus 316 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 389 (465)
++...+ .++..+...++.++|...++++... .|. ...+..+...|...|++++|...|+++.. .| ..+
T Consensus 176 ~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~ 249 (275)
T 1xnf_A 176 KEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV--HNF 249 (275)
T ss_dssp CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--TTC
T ss_pred cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc--hhH
Confidence 333333 4666777778888888888888743 221 56777888888889999999998887654 33 223
Q ss_pred HHHHHHHHhcCChHHHHHHH
Q 012360 390 KALLSACITYSEFDLGKKVA 409 (465)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~ 409 (465)
.....++...|++++|++.+
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 34455677778888887766
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=5.4e-15 Score=136.65 Aligned_cols=164 Identities=12% Similarity=-0.016 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 012360 285 TWTTMIEGLANYGL-----------------GNEALRVFYQMERK----GIKPN-EATFVSVLAACRHSGLITEGCQLFR 342 (465)
Q Consensus 285 ~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 342 (465)
++..+...|...|+ +++|...+++..+. +..+. ..++..+...+...|++++|+..++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 44555555556666 66666666554331 11121 2466677777888888888888888
Q ss_pred HhhcCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCChHHHHHHHH
Q 012360 343 RMGGVYRVQPT----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFISYKALLSACITYSEFDLGKKVAN 410 (465)
Q Consensus 343 ~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~ 410 (465)
+..+...-.++ ...+..+...|...|++++|.+.+++... .+ ...++..+...+...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77642111111 22667778888888888888888776533 11 24567778888888888888888888
Q ss_pred HHHHhCCCC------chhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 411 NMMKLGNQS------HEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 411 ~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
++++..+.. ..++..++.+|...|++++|..++++..+
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888764322 33678888888888988888888887653
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=1.1e-13 Score=116.07 Aligned_cols=209 Identities=10% Similarity=-0.039 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHH
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (465)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 72 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------
Confidence 3455555666666666666666666655532 2233444444444555555555555555444432
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 012360 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY-GLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQ 339 (465)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~ 339 (465)
+.+...+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|+.
T Consensus 73 ------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 73 ------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 12444566666777777 778888888887776333444 4567777888888888888888
Q ss_pred HHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--E-DKFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.++++.+. .+.+...+..+...+...|++++|.+.++++.. + .+...+..+...+...|+.+.|..+++.+.+..
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 88888753 234577778888888888888888888887643 3 455567777777888999999999999999999
Q ss_pred CCCchhHHH
Q 012360 417 NQSHEAYVL 425 (465)
Q Consensus 417 p~~~~~~~~ 425 (465)
|+++.....
T Consensus 213 p~~~~~~~~ 221 (225)
T 2vq2_A 213 PYSEELQTV 221 (225)
T ss_dssp TTCHHHHHH
T ss_pred CCCHHHHHH
Confidence 988875443
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.1e-14 Score=134.15 Aligned_cols=287 Identities=12% Similarity=0.039 Sum_probs=159.7
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhhc--C-C----hHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HH
Q 012360 151 IVSLNILINGYIDMELVDLAREVFDEIVD--K-D----IVLWRSMMHGCVKAKQPEEALELFKKMIDE----GVTPD-EE 218 (465)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~ 218 (465)
...+......+...|++++|...|++... | + ...+..+...+...|++++|...+++..+. +..|. ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34455666777778888888888877633 2 2 245667777777888888888887776542 11111 33
Q ss_pred HHHHHHHHhccchhhHhHHHHHHHHHHcCCC-C----ChhHHHHHHHHHHhcCC--------------------HHHHHH
Q 012360 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNIT-Q----DAFVKTALIDMYSKCGS--------------------LEEALV 273 (465)
Q Consensus 219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~~a~~ 273 (465)
++..+...+...|++++|...+++..+.... + ...++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4555666677777777777777776553110 1 13355666666666676 666666
Q ss_pred HHhcCCC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 012360 274 TFYKTDC-----K----DVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPN----EATFVSVLAACRHSGLITEGCQ 339 (465)
Q Consensus 274 ~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~ 339 (465)
.+++... + ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 6544321 1 122455555666666666666666666543200 111 1245555566666666666666
Q ss_pred HHHHhhcCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCChHHHHH
Q 012360 340 LFRRMGGVYRVQPT----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFISYKALLSACITYSEFDLGKK 407 (465)
Q Consensus 340 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~ 407 (465)
.+++......-.++ ..++..+...|...|++++|.+.+++... .+ ...++..+...+...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66665431100011 33455556666666666666666655422 11 13345555566666666666666
Q ss_pred HHHHHHHhCCCCch------hHHHHHHHHhhcCChH
Q 012360 408 VANNMMKLGNQSHE------AYVLLSNFYALEGHWT 437 (465)
Q Consensus 408 ~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~ 437 (465)
.++++++..+.... ++..++..+...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 66666666555522 3444444444444444
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=6e-14 Score=113.88 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=139.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH
Q 012360 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360 (465)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 360 (465)
++..|..+...|...|++++|+..|++..+. .| +...+..+..++.+.|++++|+..++.+... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 5567888888888999999999999988876 44 4678888889999999999999999988753 34456677788
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHH
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 438 (465)
...+...++++.|.+.+.+... +.+...+..++..+...|++++|++.|+++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8888899999999998887643 33667788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 012360 439 VAEARRNMKEL 449 (465)
Q Consensus 439 a~~~~~~~~~~ 449 (465)
|...+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999987654
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=4.3e-14 Score=127.60 Aligned_cols=224 Identities=9% Similarity=-0.047 Sum_probs=190.5
Q ss_pred HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-HHHHHHHHhcCC---CCChhhHHHHHHH
Q 012360 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS-LEEALVTFYKTD---CKDVVTWTTMIEG 292 (465)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~---~~~~~~~~~l~~~ 292 (465)
...|..+...+...|++++|...++++++.. +-+..+|..+..++...|+ +++|+..|+++. ..+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3456667777888999999999999999875 4567889999999999997 999999999866 3467899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh-cCCH
Q 012360 293 LANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR-AGLL 370 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 370 (465)
+...|++++|+..|+++.+. .| +...|..+..++...|++++|+..++++.+. .+.+...|+.+..++.. .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999987 44 5788999999999999999999999999963 24468889999999999 6665
Q ss_pred HHH-----HHHHHhCCC-CC-ccchHHHHHHHHHhcC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC-------
Q 012360 371 YQA-----EEFIKIMPA-ED-KFISYKALLSACITYS--EFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG------- 434 (465)
Q Consensus 371 ~~A-----~~~~~~~~~-~~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 434 (465)
++| ++.+++... .| +...|..+...+...| ++++|++.++++ +.+|+++.++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 466766543 44 6778999999998888 699999999998 888999999999999999975
Q ss_pred --ChHHHHHHHHHH
Q 012360 435 --HWTEVAEARRNM 446 (465)
Q Consensus 435 --~~~~a~~~~~~~ 446 (465)
.+++|.++++++
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 258899999987
No 60
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.60 E-value=5.8e-12 Score=121.34 Aligned_cols=419 Identities=9% Similarity=0.047 Sum_probs=279.2
Q ss_pred hHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCC---hhHHHHHHHHHHHcC
Q 012360 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSD---SGEVLILFKQLIFEG 79 (465)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~ 79 (465)
++..+... +-|...|..++..+.+.+.++.+..+|+.+. +.....|...+..-.+.++ ++.+..+|++.....
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~ 133 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE 133 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS
T ss_pred HHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc
Confidence 44555544 5689999999999999999999999999876 4456678888888888888 999999999998753
Q ss_pred -CCCchhhHHHHHHHhcchhh--------hhhhhHHHHHHHHh-CC-ccc-hhhHHHHHHHHHh---------CCChHHH
Q 012360 80 -IVADKITLVILFSACARLEK--------LHYGKTVHCYATKV-GL-EYM-LNMENALLLMYAK---------CKEMDEA 138 (465)
Q Consensus 80 -~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~---------~g~~~~A 138 (465)
..|+...|...+....+.++ .+.+.++|+..+.. |. .++ ..+|...+..... .++++.+
T Consensus 134 ~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~ 213 (679)
T 4e6h_A 134 LGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYI 213 (679)
T ss_dssp SCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHH
Confidence 13777777776665444333 24455778776653 55 443 4677777765443 3456788
Q ss_pred HHHHHhhCCCCCc---hhHHHHHHHHHh-------------cCChHHHHHHHHHh------hc---------------C-
Q 012360 139 LRLFDEMGSRRNI---VSLNILINGYID-------------MELVDLAREVFDEI------VD---------------K- 180 (465)
Q Consensus 139 ~~~~~~~~~~~~~---~~~~~l~~~~~~-------------~~~~~~a~~~~~~~------~~---------------~- 180 (465)
..+|++.-..|.. .+|......-.. ..+++.|...+.++ .. |
T Consensus 214 R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~ 293 (679)
T 4e6h_A 214 RKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPK 293 (679)
T ss_dssp HHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCC
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCC
Confidence 8999888323321 233222111111 12233444444432 00 0
Q ss_pred ----C---hHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHH-HHHHHHHH
Q 012360 181 ----D---IVLWRSMMHGCVKAK-------QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQ 245 (465)
Q Consensus 181 ----~---~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~ 245 (465)
+ ...|...+..--..+ ..+.+..+|++.+.. ++-....|.....-+...|+.+.|. .+++....
T Consensus 294 ~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~ 372 (679)
T 4e6h_A 294 PNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372 (679)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 0 123444444322222 123456678877765 3445666766666667778888886 99999887
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------------CC------------hhhHHHHHHHHHHcCChH
Q 012360 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-------------KD------------VVTWTTMIEGLANYGLGN 300 (465)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~~~~~ 300 (465)
. ++.+...+...+....+.|+++.|.++|+++.. |+ ...|...+....+.|+.+
T Consensus 373 ~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~ 451 (679)
T 4e6h_A 373 C-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA 451 (679)
T ss_dssp H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred h-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence 4 355666777888888889999999999887652 21 235777777778888999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 012360 301 EALRVFYQMERKGIKPNEATFVSVLAACRHS-GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (465)
.|..+|.+..+.-..+....|...+..-.+. ++.+.|..+|+...+. ++.+...+...++.....|+.+.|..+|+.
T Consensus 452 ~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 452 ASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999988761112233443333333343 4589999999999864 445666777888888889999999999998
Q ss_pred CCCC-C----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 380 MPAE-D----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 380 ~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
.... + ....|...+..-.+.|+.+.+.++.+++.+..|+++. ...++.-|
T Consensus 530 al~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~-~~~f~~ry 584 (679)
T 4e6h_A 530 SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK-LEEFTNKY 584 (679)
T ss_dssp HTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH-HHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH-HHHHHHHh
Confidence 7652 2 3456888888888899999999999999999998765 44444444
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=1.3e-14 Score=129.95 Aligned_cols=261 Identities=13% Similarity=0.058 Sum_probs=166.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHhccchhhHhHHHHHHHHHHc----CC-CCChhHHHHH
Q 012360 188 MMHGCVKAKQPEEALELFKKMIDEGVTPD----EEVMVSVLSACSSLSNLQYGRLVHRFILQN----NI-TQDAFVKTAL 258 (465)
Q Consensus 188 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 258 (465)
....+...|++++|...|+++.+.... + ...+..+...+...|+++.|...+++..+. +. +....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344455555555555555555553211 1 133444445555555555555555554332 11 1113345556
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----CC----hhhHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 012360 259 IDMYSKCGSLEEALVTFYKTDC-----KD----VVTWTTMIEGLANYGL--------------------GNEALRVFYQM 309 (465)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m 309 (465)
...+...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6666666666666666654331 11 2255666666777777 77777777665
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 012360 310 ERK----GIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT----IEHFVCLVDLLSRAGLLYQAEEFIKIM 380 (465)
Q Consensus 310 ~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (465)
.+. +..|. ...+..+...+...|++++|...++++.+.....++ ..++..+...+...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 11121 346777788888899999999999887642111111 336778888899999999999988876
Q ss_pred CC----CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC------chhHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 381 PA----ED----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQS------HEAYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 381 ~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
.. .+ ...++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|..++++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 42 11 14567888889999999999999999998865332 336889999999999999999999988
Q ss_pred HHh
Q 012360 447 KEL 449 (465)
Q Consensus 447 ~~~ 449 (465)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 654
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=6.3e-14 Score=129.09 Aligned_cols=295 Identities=11% Similarity=-0.040 Sum_probs=180.3
Q ss_pred hHHHHHHHhcchhhhhhhhHHHHHHHHhCCccc---hhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHH
Q 012360 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYM---LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI 162 (465)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 162 (465)
.+......+...|++++|...++.+.+.+.... ..++..+...+...|++++|...+++.
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------- 73 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD----------------- 73 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------------
Confidence 344444555555666666666666655431110 234445555555555555555555443
Q ss_pred hcCChHHHHHHHHHhh--cCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhccchh---
Q 012360 163 DMELVDLAREVFDEIV--DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPD----EEVMVSVLSACSSLSN--- 232 (465)
Q Consensus 163 ~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~--- 232 (465)
.++..... .....++..+...|...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 74 --------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 145 (406)
T 3sf4_A 74 --------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFG 145 (406)
T ss_dssp --------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred --------HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccc
Confidence 00000000 01234455566666666666666666666554210 011 2345555666666777
Q ss_pred -----------------hHhHHHHHHHHHHc----CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC---
Q 012360 233 -----------------LQYGRLVHRFILQN----NI-TQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-----KD--- 282 (465)
Q Consensus 233 -----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~--- 282 (465)
++.|...++...+. +. +....++..+...|...|++++|...+++... ++
T Consensus 146 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 225 (406)
T 3sf4_A 146 CPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 225 (406)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 77777777665442 11 11234677788888888888888888876542 12
Q ss_pred -hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---
Q 012360 283 -VVTWTTMIEGLANYGLGNEALRVFYQMERK----GIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT--- 353 (465)
Q Consensus 283 -~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 353 (465)
..++..+...+...|++++|...+++..+. +..+. ..++..+...+...|++++|...++++.....-.++
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 305 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG 305 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHH
Confidence 237888889999999999999999987643 11111 457788889999999999999999998743111122
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCChHHH
Q 012360 354 -IEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 354 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a 405 (465)
..++..+...|...|++++|.+.+++... .+ ...++..+...+...|+....
T Consensus 306 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 306 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 55778899999999999999999987642 11 233455555555555555543
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.58 E-value=2e-14 Score=134.70 Aligned_cols=209 Identities=10% Similarity=-0.055 Sum_probs=166.3
Q ss_pred hHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 012360 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL-EEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQ 308 (465)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 308 (465)
++.+...++...... +.+...+..+..++...|++ ++|++.|++.. +.+...|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443332 33455666666666677777 77777776543 23566788888888889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc--------CCHH
Q 012360 309 MERKGIKPNEATFVSVLAACRHS---------GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA--------GLLY 371 (465)
Q Consensus 309 m~~~g~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 371 (465)
..+. .|+...+..+..++... |++++|+..++++.+. .+.+...+..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8877 57778888888999998 9999999999999853 244678888999999988 9999
Q ss_pred HHHHHHHhCCC-CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 372 QAEEFIKIMPA-ED----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 372 ~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
+|.+.|++... .| +...|..+..+|...|++++|++.|+++++..|+++..+..++.++...|++++|.+.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999988754 34 67789999999999999999999999999999999999999999999999999998765443
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.56 E-value=1.8e-11 Score=118.01 Aligned_cols=403 Identities=10% Similarity=0.009 Sum_probs=277.5
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhh---hhhhhHHHHHHHHhC-Cccchhh
Q 012360 46 FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK---LHYGKTVHCYATKVG-LEYMLNM 121 (465)
Q Consensus 46 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 121 (465)
+.|..+|..++..+.+.++++.+..+|+++... .+.....|...+..-.+.++ .+.+..+|++.+... .+|+...
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 347889999999999999999999999999886 34556678888888888888 999999999999864 1377888
Q ss_pred HHHHHHHHHhCCCh--------HHHHHHHHhh----CC-CCC-chhHHHHHHHHH---------hcCChHHHHHHHHHhh
Q 012360 122 ENALLLMYAKCKEM--------DEALRLFDEM----GS-RRN-IVSLNILINGYI---------DMELVDLAREVFDEIV 178 (465)
Q Consensus 122 ~~~l~~~~~~~g~~--------~~A~~~~~~~----~~-~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 178 (465)
|...+....+.++. +...++|+.. |. .++ ...|...+.... ..++++.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88887766665543 3344677664 66 664 457877776554 3456788899998885
Q ss_pred c-C--Ch-HHH---HHHHHHHH----------HcCChhHHHHHHHHHHH--cCCC---------------C-----C---
Q 012360 179 D-K--DI-VLW---RSMMHGCV----------KAKQPEEALELFKKMID--EGVT---------------P-----D--- 216 (465)
Q Consensus 179 ~-~--~~-~~~---~~l~~~~~----------~~g~~~~a~~~~~~~~~--~~~~---------------~-----~--- 216 (465)
. | +. .+| ..+..... ...+++.|...+.++.. .++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 4 2 11 222 22222110 01123344455544332 1111 1 0
Q ss_pred HHHHHHHHHHhccch-------hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH-HHHhcCC---CCChhh
Q 012360 217 EEVMVSVLSACSSLS-------NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL-VTFYKTD---CKDVVT 285 (465)
Q Consensus 217 ~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~---~~~~~~ 285 (465)
...|...+.---..+ ..+.+..+|++.+.. ++.....|...+..+...|+.++|. .+|++.. +.+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 122333332211111 123456678888775 3557888888888888899998996 9998765 235566
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGI---------KPN------------EATFVSVLAACRHSGLITEGCQLFRRM 344 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 344 (465)
|...+...-+.|+++.|..+|+++.+... .|+ ...|...++...+.|+.+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77888888899999999999999876410 132 235777777777889999999999999
Q ss_pred hcCCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC---
Q 012360 345 GGVYRVQPTIEHFVCLVDLLSRAG-LLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ--- 418 (465)
Q Consensus 345 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--- 418 (465)
.+. ........|...+..-.+.+ +.+.|.++|+.... ..+...|...+......|+.+.|..+|+++++..|+
T Consensus 461 ~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 863 11223444544444444544 58999999998754 335566778888888899999999999999998873
Q ss_pred CchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 419 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
...+|..++..-.+.|+.+.+..+.+++.+.-.
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 455788888888899999999999999987644
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=1.9e-13 Score=124.96 Aligned_cols=236 Identities=9% Similarity=0.086 Sum_probs=125.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcC-CCCC----HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 012360 188 MMHGCVKAKQPEEALELFKKMIDEG-VTPD----EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262 (465)
Q Consensus 188 l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (465)
....+...|++++|...+++..+.- -.++ ..++..+...+...|+++.|...+++..+........
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------- 179 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------- 179 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT---------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc---------
Confidence 3344556666666666666665420 0111 2344444455555555555555555544321000000
Q ss_pred HhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 012360 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK----GIKPN-EATFVSVLAACRHSGLITEG 337 (465)
Q Consensus 263 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a 337 (465)
......+++.+...|...|++++|...+++..+. +-.+. ..++..+..+|...|++++|
T Consensus 180 ----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 180 ----------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 0001124455555556666666666665554432 11111 13556666667777777777
Q ss_pred HHHHHHhhcCC---CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC------CC-ccchHHHHHHHHHhcCC---hH
Q 012360 338 CQLFRRMGGVY---RV-QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA------ED-KFISYKALLSACITYSE---FD 403 (465)
Q Consensus 338 ~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~-~~~~~~~l~~~~~~~~~---~~ 403 (465)
+..+++..+.. +. +....++..+...|.+.|++++|.+.+++... .+ ....+..+...+...|+ ++
T Consensus 244 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 323 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQ 323 (383)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 77776665310 11 22345566667777777777777777665432 11 11224556666666776 56
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 404 LGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 404 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+|+.++++. ...|.....+..++..|...|++++|..++++..+.
T Consensus 324 ~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 324 GFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 666666554 122344446777788888888888888888777643
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=2e-13 Score=126.13 Aligned_cols=269 Identities=9% Similarity=-0.044 Sum_probs=156.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhh-CCCCCc-----hhHHHHHHHHHhcCChHHHHHHHHHhhc---------CChHHHH
Q 012360 122 ENALLLMYAKCKEMDEALRLFDEM-GSRRNI-----VSLNILINGYIDMELVDLAREVFDEIVD---------KDIVLWR 186 (465)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~ 186 (465)
+..+...+...|++++|...|++. ...|+. .++..+...+...|++++|...+++... ....++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 334555566666666666666665 222321 2455566666666666666666665522 1345677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhccchh-----------------hHhHHHHHHHHH
Q 012360 187 SMMHGCVKAKQPEEALELFKKMIDE----GVTP-DEEVMVSVLSACSSLSN-----------------LQYGRLVHRFIL 244 (465)
Q Consensus 187 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~~ 244 (465)
.+...|...|++++|...+++..+. +-.| ...++..+...+...|+ ++.|...+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 7777788888888888888776643 1111 23355556666667777 666666665543
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----
Q 012360 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK--DVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPN---- 317 (465)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~---- 317 (465)
+.. .....+ ....+..+...+...|++++|...+++..+... .++
T Consensus 211 ~~~----------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (411)
T 4a1s_A 211 KLM----------------------------RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE 262 (411)
T ss_dssp HHH----------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHH----------------------------HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH
Confidence 321 000000 112344445555555555555555555443200 001
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC----C----c
Q 012360 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ----PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE----D----K 385 (465)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~ 385 (465)
...+..+...+...|++++|...++++.....-. ....++..+...|...|++++|...+++.... + .
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 342 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHH
Confidence 1256666677777777777777777665321100 11456667777777788888777777765321 1 2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
..++..+...+...|++++|.+.+++++++.+.
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 346777888888888888888888888886643
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=1.3e-12 Score=119.48 Aligned_cols=296 Identities=9% Similarity=-0.044 Sum_probs=191.2
Q ss_pred hcchhhhhhhhHHHHHHHHhC--C--ccchhhHHHHHHH--HHhCCChHHHH-----------HHHHhhCCCC-CchhH-
Q 012360 94 CARLEKLHYGKTVHCYATKVG--L--EYMLNMENALLLM--YAKCKEMDEAL-----------RLFDEMGSRR-NIVSL- 154 (465)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~-~~~~~- 154 (465)
+.+.+++++|..+++++.+.- . .++...|-.++.. ..-.+.++.+. +.++.+...| +...+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 356899999999999987642 2 2333333444332 12234444444 6666652122 11212
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHHhhc-----C----ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC---
Q 012360 155 -----NILINGYIDMELVDLAREVFDEIVD-----K----DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPD--- 216 (465)
Q Consensus 155 -----~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~--- 216 (465)
......+...|++++|.+.|++... + ...++..+...|...|++++|...+++..+.-. .++
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 2255667789999999999998844 2 346788899999999999999999998876311 111
Q ss_pred --HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHH
Q 012360 217 --EEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT-QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293 (465)
Q Consensus 217 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 293 (465)
..++..+...|...|++++|...+++..+.... ++.. ....++..+...|
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------~~~~~~~~lg~~y 234 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ---------------------------LMGRTLYNIGLCK 234 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH---------------------------HHHHHHHHHHHHH
Confidence 234455555566666666666666655442100 0000 0012455566677
Q ss_pred HHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC---CCCChhhHHHHHHHHH
Q 012360 294 ANYGLGNEALRVFYQMERK----GIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYR---VQPTIEHFVCLVDLLS 365 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~ 365 (465)
...|++++|...+++..+. +..|+ ..++..+..++...|++++|...+++..+... .+.....+..+...+.
T Consensus 235 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~ 314 (383)
T 3ulq_A 235 NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL 314 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7777777777777776551 22243 45778888888899999999998888764211 1112233566778888
Q ss_pred hcCC---HHHHHHHHHhCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 366 RAGL---LYQAEEFIKIMPAED-KFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 366 ~~g~---~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
..|+ +++|..++++....+ ....+..+...|...|++++|...++++++..
T Consensus 315 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 315 SGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8888 888888888886543 34467788899999999999999999998854
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=3.7e-13 Score=120.33 Aligned_cols=237 Identities=11% Similarity=-0.010 Sum_probs=133.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhc---------CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHH
Q 012360 154 LNILINGYIDMELVDLAREVFDEIVD---------KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPD----EEV 219 (465)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~ 219 (465)
+..+...+...|++++|.+.+++... ....++..+...+...|++++|...+++..+... .++ ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 34444444444555554444444311 1234566677777778888888877777654211 111 224
Q ss_pred HHHHHHHhccchh--------------------hHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 012360 220 MVSVLSACSSLSN--------------------LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279 (465)
Q Consensus 220 ~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 279 (465)
+..+...+...|+ ++.|...+++..+.. ....
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~----------------------------~~~~ 177 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV----------------------------TALG 177 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH----------------------------HHHT
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH----------------------------HhcC
Confidence 5555666666677 666666665543320 0000
Q ss_pred C--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 012360 280 C--KDVVTWTTMIEGLANYGLGNEALRVFYQMERK----GIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352 (465)
Q Consensus 280 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 352 (465)
. .....+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++......-.+
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 0 01123444455555555666665555554432 1011 123566667777777777777777777653211111
Q ss_pred ----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 353 ----TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 353 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
...++..+...+...|++++|...+++... .+ ...++..+...+...|++++|...++++++..+.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 145666777778888888888887776532 11 2346777888888899999999999998887653
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=4.4e-13 Score=108.70 Aligned_cols=168 Identities=12% Similarity=0.039 Sum_probs=138.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012360 251 DAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327 (465)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 327 (465)
++.+|..+..+|...|++++|++.|++.. +.++.++..+...|...|++++|...+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 46677788888888888888888887754 3466788888889999999999999999887763 3345677777888
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHH
Q 012360 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a 405 (465)
+...++++.+...+.++... .+.+...+..+...|.+.|++++|.+.|++... .| +..+|..++.++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998853 345677888999999999999999999988754 33 677899999999999999999
Q ss_pred HHHHHHHHHhCCCCch
Q 012360 406 KKVANNMMKLGNQSHE 421 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~ 421 (465)
++.|+++++.+|+++.
T Consensus 161 ~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 161 VKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhCCccCHH
Confidence 9999999999987643
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=7.7e-14 Score=123.48 Aligned_cols=243 Identities=12% Similarity=0.057 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc------C-
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDE-------GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN------N- 247 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 247 (465)
..++..+...+...|++++|...++++.+. ..+.....+..+...+...|++++|...+++..+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666666666777777777777666542 11222344555555666666666666666665543 1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 012360 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLA 326 (465)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~ 326 (465)
.+....++..+...|...|++++|...|++... +...... +..|+ ...+..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~------------------------~~~~~~~-~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE------------------------IREKVLG-KDHPDVAKQLNNLAL 161 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------------HHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------------HHHHhcC-CCChHHHHHHHHHHH
Confidence 112234555566666666666666665544221 0000000 11111 223444444
Q ss_pred HHHhcCCHHHHHHHHHHhhcCC------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----------CC-cc---
Q 012360 327 ACRHSGLITEGCQLFRRMGGVY------RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----------ED-KF--- 386 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~-~~--- 386 (465)
.+...|++++|+..++++.... ..+....++..+...|...|++++|.+.++++.. .+ ..
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 4555555555555555443210 0111223344445555555555555555544321 00 11
Q ss_pred ---chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 387 ---ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 387 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
..+..+...+...+.+.++...+++.....|....++..++.+|.+.|++++|..++++..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 112223333445566667777777777777777777888888888888888888888876543
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=6.4e-12 Score=110.92 Aligned_cols=185 Identities=9% Similarity=-0.008 Sum_probs=121.9
Q ss_pred HhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Chh-hHHHHHHHHHHcCChHHHHHHHHHH
Q 012360 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--K-DVV-TWTTMIEGLANYGLGNEALRVFYQM 309 (465)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m 309 (465)
++|..+|++.++.-.+.+...|..++..+...|++++|..+|+++.. | +.. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66666666666531133445666666666667777777777665442 2 233 6777777777777888888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC
Q 012360 310 ERKGIKPNEATFVSVLAACR-HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED 384 (465)
Q Consensus 310 ~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 384 (465)
.+.. +++...|........ ..|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++... .|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 7653 223334433332222 258888888888888753 234567777788888888888888888877644 22
Q ss_pred --ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 385 --KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 385 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
....|..++..+.+.|+.+.|..+++++++..|++..
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 3346777777777888888888888888888887554
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.49 E-value=6.5e-13 Score=107.65 Aligned_cols=161 Identities=14% Similarity=0.029 Sum_probs=97.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc
Q 012360 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367 (465)
Q Consensus 288 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (465)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHh
Confidence 33444444444444444444443321 123344445555555555555555555555432 123444555555555566
Q ss_pred CCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 368 GLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 368 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
|++++|.+.++++.. +.+...+..++..+...|++++|...++++++..|.++..+..++.++...|++++|...+++
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666665555432 224556677777777888888888888888888888888888888888888888888888887
Q ss_pred HHHhcC
Q 012360 446 MKELQT 451 (465)
Q Consensus 446 ~~~~~~ 451 (465)
..+...
T Consensus 170 ~~~~~~ 175 (186)
T 3as5_A 170 ANELDE 175 (186)
T ss_dssp HHHHHH
T ss_pred HHHcCC
Confidence 766543
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=5.3e-12 Score=111.45 Aligned_cols=213 Identities=8% Similarity=0.021 Sum_probs=167.6
Q ss_pred HhHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCH-------HHHHHHHhcCCC---C-ChhhHHHHHHHHHH
Q 012360 234 QYGRLVHRFILQNNITQDAFVKTALIDMYS-------KCGSL-------EEALVTFYKTDC---K-DVVTWTTMIEGLAN 295 (465)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 295 (465)
+.|..+|++.+... +.++..|..++..+. ..|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777776653 445666666666655 35775 899999987543 3 55689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH-hcCCHHH
Q 012360 296 YGLGNEALRVFYQMERKGIKPNE-A-TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS-RAGLLYQ 372 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 372 (465)
.|++++|..+|++..+. .|+. . .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 5643 3 7888999999999999999999999963 2344555544443322 3799999
Q ss_pred HHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHh---CCC-CchhHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 373 AEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKL---GNQ-SHEAYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 373 A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
|.++|++... +.+...|..++..+.+.|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998754 336778999999999999999999999999996 343 5668999999999999999999999988
Q ss_pred HHhcC
Q 012360 447 KELQT 451 (465)
Q Consensus 447 ~~~~~ 451 (465)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 76544
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.47 E-value=1.1e-12 Score=127.82 Aligned_cols=163 Identities=12% Similarity=0.104 Sum_probs=142.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH
Q 012360 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360 (465)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 360 (465)
+..+++.|...|.+.|++++|+..|++..+. .|+ ...+..+..++.+.|++++|+..|+++.+. .+-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3557888888899999999999999998876 554 678888999999999999999999999853 23357888999
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHH
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 438 (465)
..+|.+.|++++|++.|++... +| +...|..++.++...|++++|++.|+++++++|+++..+..++.++...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999988654 34 677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 012360 439 VAEARRNMKE 448 (465)
Q Consensus 439 a~~~~~~~~~ 448 (465)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=3.1e-11 Score=109.99 Aligned_cols=157 Identities=11% Similarity=0.030 Sum_probs=76.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhccchhhHhHHHHHHHHHHcCC-----C-CChhHHH
Q 012360 188 MMHGCVKAKQPEEALELFKKMIDEGV-TPD----EEVMVSVLSACSSLSNLQYGRLVHRFILQNNI-----T-QDAFVKT 256 (465)
Q Consensus 188 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 256 (465)
....+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+++..+... . ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456677888888888877765311 122 23455556666677777777776666554211 0 0123444
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 012360 257 ALIDMYSKCGSLEEALVTFYKTDC-----KD----VVTWTTMIEGLANYGLGNEALRVFYQMER-----KGIKPNEATFV 322 (465)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~ 322 (465)
.+..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 555555555555555555543221 01 12333444444444444444444444433 21 11123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Q 012360 323 SVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
.+..++.+.|++++|...+++..
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444444444443
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.46 E-value=6e-11 Score=107.87 Aligned_cols=159 Identities=11% Similarity=0.080 Sum_probs=67.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH-----
Q 012360 288 TMIEGLANYGLGNEALRVFYQMERKGIK--P--NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----- 358 (465)
Q Consensus 288 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 358 (465)
.+...+...|++++|...+++..+.... + ...++..+...+...|++++|...+++.............+.
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 3444445555555555555544432111 0 112344444555555555555555555432100000000111
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC-C-c----cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC------CchhHHHH
Q 012360 359 CLVDLLSRAGLLYQAEEFIKIMPAE-D-K----FISYKALLSACITYSEFDLGKKVANNMMKLGNQ------SHEAYVLL 426 (465)
Q Consensus 359 ~l~~~~~~~g~~~~A~~~~~~~~~~-~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l 426 (465)
..+..+...|++++|...+++.... + + ...+..+...+...|++++|...++++.+..+. ....+..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 1222244555555555555554321 1 0 012334444555555555555555555443211 11134444
Q ss_pred HHHHhhcCChHHHHHHHHHH
Q 012360 427 SNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 427 ~~~~~~~g~~~~a~~~~~~~ 446 (465)
+.++...|++++|...+++.
T Consensus 300 a~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 55555555555555555544
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=4.3e-12 Score=106.77 Aligned_cols=189 Identities=16% Similarity=0.015 Sum_probs=110.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 012360 251 DAFVKTALIDMYSKCGSLEEALVTFYKTD---C-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVL 325 (465)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~ 325 (465)
++..+......+...|++++|...|++.. + ++...+..+..++...|++++|...+++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 44566666666677777777777666543 2 45555555666666677777777777766655 343 34566666
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc---cchHHHHHH
Q 012360 326 AACRHSGLITEGCQLFRRMGGVYRVQPTI-------EHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK---FISYKALLS 394 (465)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~l~~ 394 (465)
.++...|++++|+..+++..+. .+.+. ..|..+...+...|++++|.+.|++... .|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 6666677777777777766642 12223 3455566666666666666666665543 232 344555555
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
++... +..+++++..+.+.++..|... .....+.+++|...+++..+..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 55433 2344555555555444333222 2334455699999999887654
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.42 E-value=2.3e-11 Score=110.77 Aligned_cols=191 Identities=12% Similarity=-0.008 Sum_probs=106.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhc-----C-----ChHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-CH
Q 012360 153 SLNILINGYIDMELVDLAREVFDEIVD-----K-----DIVLWRSMMHGCVKAKQPEEALELFKKMIDE----GVTP-DE 217 (465)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 217 (465)
++..+...+...|+++.|...+++... + ...+++.+...|...|++++|...+++..+. +..+ ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344445555555555555555544311 0 1234556666666666666666666665542 1111 12
Q ss_pred HHHHHHHHHhccchhhHhHHHHHHHHHHc----CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------CC-hhh
Q 012360 218 EVMVSVLSACSSLSNLQYGRLVHRFILQN----NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-------KD-VVT 285 (465)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~-~~~ 285 (465)
.++..+...+...|++++|...+++..+. +.+....++..+..++.+.|++++|...+++... +. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34555566666667777777666666551 2222355666677777777777777777655321 11 123
Q ss_pred HHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012360 286 WTTMIEGLANYGL---GNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGG 346 (465)
Q Consensus 286 ~~~l~~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (465)
+..+...+...++ ..+|...+++ .+..|+ ...+..+...|...|++++|...|+++.+
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444555555666 5556655554 322333 24556677788888888888888887753
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=2.5e-12 Score=113.70 Aligned_cols=206 Identities=10% Similarity=0.007 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhccchhhHhHHHHHHHHHHcC------C
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDE------GVTP-DEEVMVSVLSACSSLSNLQYGRLVHRFILQNN------I 248 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~ 248 (465)
..++..+...|...|++++|...+++..+. +..| ...++..+...+...|++++|...++++.+.. .
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 356777778888888888888888877653 2222 34566777788888899999988888876541 1
Q ss_pred -CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHH
Q 012360 249 -TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK------GIKPN-EAT 320 (465)
Q Consensus 249 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~ 320 (465)
+....++..+. ..+...|++++|..+++++.+. +..|. ..+
T Consensus 149 ~~~~~~~~~~la-------------------------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (311)
T 3nf1_A 149 HPDVAKQLNNLA-------------------------------LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 197 (311)
T ss_dssp CHHHHHHHHHHH-------------------------------HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH
T ss_pred ChHHHHHHHHHH-------------------------------HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 11122334444 4444555555555555554432 11222 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCC------CCCCC-hh------hHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-c
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVY------RVQPT-IE------HFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-K 385 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~ 385 (465)
+..+..++...|++++|...++++.+.. ...+. .. .+..+...+...+.+.+|...+..... .| .
T Consensus 198 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 277 (311)
T 3nf1_A 198 KNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV 277 (311)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchH
Confidence 6666677777777777777777766310 01111 11 122223333444555566666666553 22 5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
..++..++..|...|++++|.+.+++++++.|.
T Consensus 278 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 278 TTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 567889999999999999999999999988764
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=1.5e-11 Score=115.31 Aligned_cols=189 Identities=13% Similarity=-0.078 Sum_probs=96.2
Q ss_pred chhhHHHHHHHHHhCCCh-HHHHHHHHhh-CCCC-CchhHHHHHHHHHhcCChHHHHHHHHHhh--cCChHHHHHHHHHH
Q 012360 118 MLNMENALLLMYAKCKEM-DEALRLFDEM-GSRR-NIVSLNILINGYIDMELVDLAREVFDEIV--DKDIVLWRSMMHGC 192 (465)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~ 192 (465)
+...+..+..++...|++ ++|++.|++. ...| +..+|..+...|...|++++|.+.|++.. .|+...+..+...+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~ 180 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVL 180 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444555555555 5555555444 2222 23445555555555555555555555442 23444455555555
Q ss_pred HHc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc--------hhhHhHHHHHHHHHHcCCC--CChh
Q 012360 193 VKA---------KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL--------SNLQYGRLVHRFILQNNIT--QDAF 253 (465)
Q Consensus 193 ~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~--~~~~ 253 (465)
... |++++|+..|++..+.. +.+...+..+..++... |++++|...|++..+.... .+..
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 259 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD 259 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH
Confidence 555 55555555555555532 12344455555555554 5566666666655554210 3455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHH
Q 012360 254 VKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFY 307 (465)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 307 (465)
.+..+..+|...|++++|.+.|++.. +.+...+..+...+...|++++|...+.
T Consensus 260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 260 LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566666666666666666665543 2234455555556666666666655443
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.41 E-value=1.6e-11 Score=103.22 Aligned_cols=204 Identities=10% Similarity=0.019 Sum_probs=159.6
Q ss_pred CCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHH
Q 012360 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIE 291 (465)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~ 291 (465)
.|...+......+...|++++|...|+...+...+++...+..+..++...|++++|+..|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 35677888888899999999999999999998744777788889999999999999999998865 235668899999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---hhhHHHH
Q 012360 292 GLANYGLGNEALRVFYQMERKGIKPN-E-------ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT---IEHFVCL 360 (465)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 360 (465)
.+...|++++|...+++..+. .|+ . ..|..+...+...|++++|+..|+++.+. .|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 999999999999999999886 443 4 45777888899999999999999999953 454 5677788
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
..+|...|+. .++++.. ..+...+.... ....+.+++|+..+++++++.|+++.+...+....
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888766543 2232221 12233343333 33567799999999999999999998777666554
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=1.8e-11 Score=98.95 Aligned_cols=167 Identities=10% Similarity=-0.049 Sum_probs=142.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 328 (465)
...+..+...+...|++++|...++++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34567788889999999999999998764 356788889999999999999999999988763 33567888899999
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHH
Q 012360 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 406 (465)
...|++++|...++++... .+.+...+..+...+...|++++|.+.++++.. +.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999863 345678888999999999999999999988654 335678899999999999999999
Q ss_pred HHHHHHHHhCCCCch
Q 012360 407 KVANNMMKLGNQSHE 421 (465)
Q Consensus 407 ~~~~~~~~~~p~~~~ 421 (465)
..++++++..|++..
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 165 PHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHCCCG
T ss_pred HHHHHHHHcCCCchh
Confidence 999999999887765
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.35 E-value=1.6e-10 Score=99.00 Aligned_cols=238 Identities=10% Similarity=0.023 Sum_probs=161.2
Q ss_pred HhcCChHHHHHHHHHhhcCC-hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHH
Q 012360 162 IDMELVDLAREVFDEIVDKD-IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240 (465)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (465)
.-.|++..++.-..++...+ ...-.-+.++|...|+++.. ..-.|....+..+...+ ..+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHH
Confidence 34455555555333332222 22233345677777776642 11234433444333333 222 66777
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012360 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-----DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315 (465)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 315 (465)
++..+.+ .++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+. .
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--I 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 7776655 455556668888899999999999999876432 4457778889999999999999999999876 6
Q ss_pred C-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----
Q 012360 316 P-----NEATFVSVLAA--CRHSG--LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA---- 382 (465)
Q Consensus 316 p-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 382 (465)
| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 6 35666667666 33334 899999999999854 35533334455589999999999999986543
Q ss_pred --------CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 383 --------EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 383 --------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+.++.++..++......|+ +|.++++++.+..|+++.
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 2366777667666667776 889999999999999986
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=2.3e-09 Score=97.41 Aligned_cols=267 Identities=9% Similarity=-0.047 Sum_probs=137.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchh----hHHHHHHHhcchhhhhhhhHHHHHHHHhCCcc-----chhhHHH
Q 012360 54 TLMSIYNDFSDSGEVLILFKQLIFEGIVADKI----TLVILFSACARLEKLHYGKTVHCYATKVGLEY-----MLNMENA 124 (465)
Q Consensus 54 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ 124 (465)
.....+...|++++|...+++........+.. ++..+...+...|+++.|...+++........ ...++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667788888888888876643111211 34444555666777777777777666532110 1122345
Q ss_pred HHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---C-ChHHHHHHHHHHHHcCChhH
Q 012360 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD---K-DIVLWRSMMHGCVKAKQPEE 200 (465)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~ 200 (465)
+...+...|++++|...+++. .++...... + ....+..+...+...|++++
T Consensus 99 la~~~~~~G~~~~A~~~~~~a-------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKA-------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH-------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 556666667777776666554 111111111 1 12344555666667777777
Q ss_pred HHHHHHHHHHcCCC--C--CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCC--hhHHH----HHHHHHHhcCCHHH
Q 012360 201 ALELFKKMIDEGVT--P--DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD--AFVKT----ALIDMYSKCGSLEE 270 (465)
Q Consensus 201 a~~~~~~~~~~~~~--~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~ 270 (465)
|...+++....... + ...++..+...+...|++++|...+++.......++ ..... ..+..+...|++++
T Consensus 154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 77777766543211 1 123445555566666777777777666654311111 11111 22333556677777
Q ss_pred HHHHHhcCCCCCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 012360 271 ALVTFYKTDCKDV-------VTWTTMIEGLANYGLGNEALRVFYQMERK----GIKPNE-ATFVSVLAACRHSGLITEGC 338 (465)
Q Consensus 271 a~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~~~~~~a~ 338 (465)
|...+++...++. ..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|.
T Consensus 234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 7777766553221 12344455555666666666666554322 111111 13333444455555555555
Q ss_pred HHHHHhh
Q 012360 339 QLFRRMG 345 (465)
Q Consensus 339 ~~~~~~~ 345 (465)
..+++..
T Consensus 314 ~~l~~al 320 (373)
T 1hz4_A 314 RVLLDAL 320 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.32 E-value=1.5e-11 Score=107.57 Aligned_cols=186 Identities=10% Similarity=0.010 Sum_probs=111.8
Q ss_pred HHHhcCCHHHHHHHHhcCCC-------C--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 012360 261 MYSKCGSLEEALVTFYKTDC-------K--DVVTWTTMIEGLANYGLGNEALRVFYQMERK----GIKPN-EATFVSVLA 326 (465)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~ 326 (465)
.|...|++++|...|++... + ...+|+.+...|...|++++|+..+++..+. |-.+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666666655544321 1 1345666677777777777777777665542 11111 246677777
Q ss_pred HHHhc-CCHHHHHHHHHHhhcCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---ccc-----hHHHH
Q 012360 327 ACRHS-GLITEGCQLFRRMGGVYRVQPT----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED---KFI-----SYKAL 392 (465)
Q Consensus 327 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~~-----~~~~l 392 (465)
.|... |++++|+..|++..+...-..+ ..++..+...+.+.|++++|...|++... .| ... .|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 78775 8888888888887642110011 34577778888888888888888876533 22 111 45667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchh-----HHHHHHHHh--hcCChHHHHHHHHHH
Q 012360 393 LSACITYSEFDLGKKVANNMMKLGNQSHEA-----YVLLSNFYA--LEGHWTEVAEARRNM 446 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~~ 446 (465)
+.++...|++++|+..+++++++.|..... +..++.++. ..+++++|...++++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 777888888888888888888877765442 344555554 345677777766544
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=1.7e-11 Score=106.64 Aligned_cols=164 Identities=12% Similarity=0.029 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC------CCC
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERK------GIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVY------RVQ 351 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~ 351 (465)
++..+...+...|++++|...+.+..+. ...| ...++..+...+...|++++|...++++.+.. ..+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555555555555555555554432 1112 23455666666666677777766666665320 011
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----------CC-ccchHHHHHHHHHhcCChH------HHHHHHHHHHH
Q 012360 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----------ED-KFISYKALLSACITYSEFD------LGKKVANNMMK 414 (465)
Q Consensus 352 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~-~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~ 414 (465)
....++..+...|...|++++|...+++... .+ ....|..+.......+... .+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 1244556666667777777777766665432 11 2223333333333322222 22222222212
Q ss_pred hCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 415 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
..|....++..++.+|...|++++|..++++..+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2244455677888888888888888888876654
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.26 E-value=1.9e-10 Score=98.87 Aligned_cols=182 Identities=7% Similarity=-0.080 Sum_probs=102.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 012360 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDC--K-D---VVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPN-EATFV 322 (465)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~ 322 (465)
+...+..+...+.+.|++++|...|+++.. | + ...+..+..++...|++++|...|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 455566666777777777777777776542 2 2 34566666777777777777777777766521 112 34555
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHH
Q 012360 323 SVLAACRH--------SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394 (465)
Q Consensus 323 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 394 (465)
.+..++.. .|++++|+..|+++.+.+ +.+......+.......+.. ...+..++.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 66666666 777777777777776431 11222221111000000000 001244555
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHhhc----------CChHHHHHHHHHHHHh
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSH---EAYVLLSNFYALE----------GHWTEVAEARRNMKEL 449 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 449 (465)
.+...|++++|+..|+++++..|+++ ..+..++.+|... |++++|...++++.+.
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 66666666666666666666666533 3566666666654 6666666666665543
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=5.7e-11 Score=115.86 Aligned_cols=163 Identities=13% Similarity=0.086 Sum_probs=132.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 012360 251 DAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLA 326 (465)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~ 326 (465)
+..+++.+..+|.+.|++++|++.|++.. ..+..+|..+..+|.+.|++++|+..|++..+. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45677778888888888888888887754 235678888888899999999999999988876 454 678888999
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHH
Q 012360 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDL 404 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~ 404 (465)
++...|++++|++.|+++.+. .+-+...+..+..+|...|++++|++.|++... .| +...+..++.++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998853 234577888999999999999999999988654 44 66788899999999999999
Q ss_pred HHHHHHHHHHhCC
Q 012360 405 GKKVANNMMKLGN 417 (465)
Q Consensus 405 a~~~~~~~~~~~p 417 (465)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 9999999887543
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.25 E-value=6.5e-10 Score=93.04 Aligned_cols=182 Identities=9% Similarity=-0.071 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHH
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTDC--KD----VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE----ATF 321 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~ 321 (465)
...+..+...+...|++++|...|+++.. |+ ...+..+..++.+.|++++|+..|+++.+. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455566667777777777777776542 22 135666667777777777777777777665 3332 134
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 012360 322 VSVLAACRH------------------SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383 (465)
Q Consensus 322 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (465)
..+..++.. .|++++|+..|+++.+. .+-+..........-. .....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~----~~~~~--------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF----LKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH----HHHHH---------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH----HHHHH---------
Confidence 444444443 34566666666666642 1112222211111000 00000
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC
Q 012360 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH---EAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 384 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
......++..+.+.|++++|+..|+++++..|+++ .++..++.++.+.|++++|...++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00113466778899999999999999999999886 46899999999999999999999988766543
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=6.9e-10 Score=95.08 Aligned_cols=239 Identities=7% Similarity=0.009 Sum_probs=166.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 012360 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269 (465)
Q Consensus 190 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (465)
+-..-.|++..++.-..++. ...+......+.+++...|++... ..-.|....+..+... ...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc---
Confidence 44456788888887433221 122233334455777777766542 1223333344444433 3333
Q ss_pred HHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 270 EALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 270 ~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
|+..|++.. .++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777654 2455566688889999999999999999987765323 45678888899999999999999999998
Q ss_pred cCCCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHhCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 346 GVYRVQP-----TIEHFVCLVDL--LSRAG--LLYQAEEFIKIMPAED-KFISYKALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 346 ~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
+ ..| +..+...|+.+ ....| ++.+|..+|+++...+ +..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 164 ~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 N---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred h---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 356 35556666666 33334 8999999999986543 3233444555888999999999999988776
Q ss_pred ----------CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 416 ----------GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 416 ----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+|+++.++..++......|+ +|.++++++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48899988888888888887 8899999887653
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.25 E-value=1.7e-10 Score=87.68 Aligned_cols=128 Identities=18% Similarity=0.196 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHh
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACIT 398 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 398 (465)
+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++.. +.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344455555556666666666655532 123444555555566666666666666655432 2244556667777778
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 399 YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.|++++|.+.++++.+..|.++..+..++.++...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888877778888888888888888888888776543
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.23 E-value=1.9e-11 Score=95.08 Aligned_cols=142 Identities=10% Similarity=-0.127 Sum_probs=103.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcC
Q 012360 290 IEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368 (465)
Q Consensus 290 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 368 (465)
...+...|++++|+..++..... .|+ ...+..+...|.+.|++++|++.|+++.+. .+.+...|..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34445566777787777776544 443 345666778888888888888888888752 2346777888888888888
Q ss_pred CHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHH-HHHHHHhCCCCchhHHHHHHHHhhcCC
Q 012360 369 LLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKV-ANNMMKLGNQSHEAYVLLSNFYALEGH 435 (465)
Q Consensus 369 ~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 435 (465)
++++|...|++... .| ++..|..+...+.+.|++++|.+. +++++++.|+++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888877644 34 567788888888888888776654 588888889888888888888877775
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.22 E-value=2.9e-10 Score=97.71 Aligned_cols=202 Identities=10% Similarity=-0.028 Sum_probs=141.0
Q ss_pred CCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---hhh
Q 012360 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD---AFVKTALIDMYSKCGSLEEALVTFYKTDC--K-D---VVT 285 (465)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~ 285 (465)
.+...+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|...|++++|...|++... | + ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355667777778899999999999999998864 223 66788899999999999999999988653 3 2 346
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhh
Q 012360 286 WTTMIEGLAN--------YGLGNEALRVFYQMERKGIKPNE-ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356 (465)
Q Consensus 286 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (465)
+..+..++.. .|++++|...|+++.+. .|+. .....+. .+..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH-----HHHH
Confidence 7777888888 99999999999999887 4543 2221111 11111100 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCc----cchHHHHHHHHHhc----------CChHHHHHHHHHHHHhCCCCch
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA-EDK----FISYKALLSACITY----------SEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+..+...|.+.|++++|...|+.+.. .|+ ...+..++.++... |++++|+..++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 45667777788888888888777643 232 33566677777655 8899999999999999999875
Q ss_pred ---hHHHHHHHHhhcCChHH
Q 012360 422 ---AYVLLSNFYALEGHWTE 438 (465)
Q Consensus 422 ---~~~~l~~~~~~~g~~~~ 438 (465)
....+...+.+.+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444433
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.22 E-value=1.6e-10 Score=100.93 Aligned_cols=221 Identities=14% Similarity=-0.004 Sum_probs=121.9
Q ss_pred ChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhccchhhHhHHHHH
Q 012360 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE----GVTPD-EEVMVSVLSACSSLSNLQYGRLVH 240 (465)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 240 (465)
++++|.+.|++. ...|...|++++|...|.+..+. |-+++ ..+|..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356665555443 55666677777777777665542 11111 234555555555566666666555
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCC---CC
Q 012360 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY-GLGNEALRVFYQMERKGI---KP 316 (465)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~---~p 316 (465)
++..+.. ...|+...+ ..+++.+...|... |++++|+..|++..+... .+
T Consensus 101 ~~Al~l~---------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQIF---------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHH---------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH---------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 5554321 111111111 22455566666664 777777777776654310 00
Q ss_pred -C-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCcc--
Q 012360 317 -N-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI-----EHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKF-- 386 (465)
Q Consensus 317 -~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-- 386 (465)
. ..++..+...+...|++++|+..|+++.+...-.+.. ..+..+..++...|++++|...+++... .|+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 0 2456677777778888888888888777531111111 1456667777778888888888877654 3321
Q ss_pred ----chHHHHHHHHH--hcCChHHHHHHHHHHHHhCCCCchhH
Q 012360 387 ----ISYKALLSACI--TYSEFDLGKKVANNMMKLGNQSHEAY 423 (465)
Q Consensus 387 ----~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~ 423 (465)
..+..++.++. ..+++++|+..|+++..++|.....+
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 12334455553 34567777777777766666554433
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=3.7e-10 Score=98.04 Aligned_cols=207 Identities=8% Similarity=0.003 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCC---CCC
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDE------GVTP-DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI---TQD 251 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~ 251 (465)
..++..+...|...|++++|...+++..+. +-.| ...++..+...+...|++++|...+++..+... .++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345666666667777777777777666543 1111 233445555555666666666666655544210 000
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHH
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK------GIKPN-EATFVSV 324 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~l 324 (465)
.......+..+...+...|++++|...+++..+. +-.|+ ..++..+
T Consensus 123 ---------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 175 (283)
T 3edt_B 123 ---------------------------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175 (283)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred ---------------------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 0001234555556666666666666666665543 11232 3567777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCC------CCCC-ChhhHHHHHHHHHhcCC------HHHHHHHHHhCCCC-C-ccchH
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVY------RVQP-TIEHFVCLVDLLSRAGL------LYQAEEFIKIMPAE-D-KFISY 389 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~-~-~~~~~ 389 (465)
..++...|++++|...++++.+.. ...+ ....+..+...+...+. +..+...++..... | ...++
T Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (283)
T 3edt_B 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTL 255 (283)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 788888888888888888776420 1122 23333344433333332 33344444444332 2 44568
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 390 KALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
..+...|...|++++|..+++++++.
T Consensus 256 ~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 256 RSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999998764
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.18 E-value=7.8e-11 Score=115.44 Aligned_cols=168 Identities=10% Similarity=-0.023 Sum_probs=126.4
Q ss_pred HhcCCHHHHHHHHhcCC-----------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 012360 263 SKCGSLEEALVTFYKTD-----------CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRH 330 (465)
Q Consensus 263 ~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~ 330 (465)
...|++++|++.+++.. ..+...+..+...+...|++++|...|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 56788888888887654 335567777888888888888888888888776 34 45677778888888
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKV 408 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~ 408 (465)
.|++++|+..|+++.+. .+.+...+..+..++.+.|++++ .+.|+++.. .| +...|..+..++...|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888888742 23356777788888888888888 888877643 33 566788888888888888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhhcCC
Q 012360 409 ANNMMKLGNQSHEAYVLLSNFYALEGH 435 (465)
Q Consensus 409 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 435 (465)
|+++++++|.+...+..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888888888888888877655
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.17 E-value=7.6e-10 Score=96.34 Aligned_cols=170 Identities=6% Similarity=-0.112 Sum_probs=135.5
Q ss_pred HHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 012360 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352 (465)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 352 (465)
.+....+.+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++... .|
T Consensus 108 ~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p 182 (287)
T 3qou_A 108 LLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQ 182 (287)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GC
T ss_pred HHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hc
Confidence 333333344556667778888999999999999998887 45 4678888899999999999999999998753 45
Q ss_pred ChhhHH-HHHHHHHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhHHHHH
Q 012360 353 TIEHFV-CLVDLLSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS--HEAYVLLS 427 (465)
Q Consensus 353 ~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~ 427 (465)
+..... .....+...++.++|...+++... . .+...+..+...+...|++++|+..|+++++.+|++ ...+..++
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 544333 333346677888888888887643 3 467889999999999999999999999999999988 77899999
Q ss_pred HHHhhcCChHHHHHHHHHHHH
Q 012360 428 NFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 428 ~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.++...|+.++|...+++...
T Consensus 263 ~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999998886543
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=9.2e-10 Score=83.55 Aligned_cols=132 Identities=13% Similarity=0.142 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (465)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677788888899999999998887763 335677778888888899999999999998753 244567788888899
Q ss_pred HhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 012360 365 SRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 419 (465)
...|++++|.+.++++.. +.+...+..++..+...|++++|...++++++..|.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999887643 2356678888999999999999999999999988763
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.16 E-value=1.9e-09 Score=89.19 Aligned_cols=160 Identities=8% Similarity=-0.083 Sum_probs=99.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhhcCCCCCCChhhH
Q 012360 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG----LITEGCQLFRRMGGVYRVQPTIEHF 357 (465)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (465)
++..+..+...|...+++++|..+|++..+.| +...+..+...|.. + ++++|+.+|++..+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 44455555555555666666666666666554 34455555555555 4 666777777666542 244555
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhCCCCCc----cchHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 012360 358 VCLVDLLSR----AGLLYQAEEFIKIMPAEDK----FISYKALLSACIT----YSEFDLGKKVANNMMKLGNQSHEAYVL 425 (465)
Q Consensus 358 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 425 (465)
..|...|.. .+++++|.++|++.....+ +..+..|...|.. .+++++|+..|+++.+. |.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 566666655 6667777777766655443 5666667666666 66777777777777776 444555777
Q ss_pred HHHHHhhc-C-----ChHHHHHHHHHHHHhc
Q 012360 426 LSNFYALE-G-----HWTEVAEARRNMKELQ 450 (465)
Q Consensus 426 l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 450 (465)
|+.+|... | ++++|..++++..+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777643 2 6777777777766554
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.15 E-value=8.8e-11 Score=91.26 Aligned_cols=124 Identities=8% Similarity=-0.051 Sum_probs=103.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCC
Q 012360 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSE 401 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~ 401 (465)
|...+...|++++|+..++..... .+.+...+..+...|.+.|++++|.+.|++... .| ++.+|..++.++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 445566778999999999999852 233456677899999999999999999998754 34 77889999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHH-HHHHHHh
Q 012360 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA-RRNMKEL 449 (465)
Q Consensus 402 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~ 449 (465)
+++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999886654 5777654
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.12 E-value=4.3e-07 Score=84.99 Aligned_cols=364 Identities=7% Similarity=-0.025 Sum_probs=197.7
Q ss_pred chhhhHHHHHHHccCChHHHHHHhccCC--CCCcccHHHHHHHHHhcCC-hhHHHHHHHHHHHc-CCCC-chhhHHHHHH
Q 012360 18 IYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIYNDFSD-SGEVLILFKQLIFE-GIVA-DKITLVILFS 92 (465)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~-~~~~-~~~~~~~l~~ 92 (465)
-.+|...+..+-. |+++.+..+|+... .|++..|...+....+.++ .+....+|+..... |..| +...|...+.
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 3455555555544 77888888888765 4677788877777666653 45567777776653 3223 4556666666
Q ss_pred Hhc----chhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChH
Q 012360 93 ACA----RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168 (465)
Q Consensus 93 ~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 168 (465)
.+. ..++.+.+..+|+..+......-...|......-. ......+..++.+. .+.+.
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~~~------------------~~~y~ 154 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIVGDT------------------LPIFQ 154 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHHHHH------------------HHHHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHHHHH------------------hHHHH
Confidence 554 34677888888888876321111122222211111 11111122221111 01222
Q ss_pred HHHHHHHHhhc----CChHHHHHHHHHHHHcC--C-----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHH
Q 012360 169 LAREVFDEIVD----KDIVLWRSMMHGCVKAK--Q-----PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237 (465)
Q Consensus 169 ~a~~~~~~~~~----~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (465)
.|..+++.... .+...|...+.--...+ - .+.+..+|++++... +.+...|...+.-+...|+.+.|.
T Consensus 155 ~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar 233 (493)
T 2uy1_A 155 SSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAK 233 (493)
T ss_dssp HHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 22322222211 12334433333221110 0 233555666666542 334455555555556666777777
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH-HHHHhcCC----------C--CChhhHHHHHHHHHHcCChHHHHH
Q 012360 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA-LVTFYKTD----------C--KDVVTWTTMIEGLANYGLGNEALR 304 (465)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~----------~--~~~~~~~~l~~~~~~~~~~~~a~~ 304 (465)
.++++.... +.+...+.. |......++. ..+.+... . .....|...+....+.++.+.|..
T Consensus 234 ~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~ 307 (493)
T 2uy1_A 234 KVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRK 307 (493)
T ss_dssp HHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 777776665 323222221 1111111111 11111100 0 112356666677777788999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 012360 305 VFYQMERKGIKPNEATFVSVLAACRH-SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383 (465)
Q Consensus 305 ~~~~m~~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (465)
+|++. +.. ..+...|...+..-.. .++.+.|..+|+...+.+ +.++..+...++...+.|+.+.|..+|+.+.
T Consensus 308 i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 308 LFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE-- 381 (493)
T ss_dssp HHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--
T ss_pred HHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 99988 321 2234444332222222 336999999999998643 3344556667777788999999999999984
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 384 DKFISYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 384 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
.....|...+..-...|+.+.+..+++++.+
T Consensus 382 k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3466788888777888999999998988886
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.12 E-value=1.1e-09 Score=105.37 Aligned_cols=159 Identities=13% Similarity=0.060 Sum_probs=122.6
Q ss_pred cCCHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 012360 265 CGSLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQL 340 (465)
Q Consensus 265 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 340 (465)
.|++++|.+.|++..+ .+...+..+...+...|++++|...+++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999988763 35678888999999999999999999999876 44 467888899999999999999999
Q ss_pred HHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhc---CChHHHHHHHHHHHHh
Q 012360 341 FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITY---SEFDLGKKVANNMMKL 415 (465)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 415 (465)
++++.+. .+.+...+..+..+|.+.|++++|.+.+++... . .+...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999853 244677889999999999999999999988654 3 3567788899999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 012360 416 GNQSHEAYVLLS 427 (465)
Q Consensus 416 ~p~~~~~~~~l~ 427 (465)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888777666
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.12 E-value=5.4e-10 Score=89.54 Aligned_cols=159 Identities=11% Similarity=0.003 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHH
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (465)
.+..+...+...|++++|...+++..+. .| +...+..+..++...|++++|+..++++... .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 3444556667777777777777776554 33 3556777777777788888888888777643 2333332222211
Q ss_pred -HHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHhhcCChHH
Q 012360 364 -LSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQS--HEAYVLLSNFYALEGHWTE 438 (465)
Q Consensus 364 -~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 438 (465)
+...+...+|...+++... .| +...+..+...+...|++++|+..|+++++..|+. +..+..++.++...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 1122233345666666543 33 56778888888999999999999999999988765 4578899999999999999
Q ss_pred HHHHHHHHHH
Q 012360 439 VAEARRNMKE 448 (465)
Q Consensus 439 a~~~~~~~~~ 448 (465)
|...+++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887654
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=1.1e-09 Score=107.40 Aligned_cols=151 Identities=9% Similarity=-0.056 Sum_probs=133.1
Q ss_pred HHcCChHHHHHHHHHHH--------HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH
Q 012360 294 ANYGLGNEALRVFYQME--------RKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~m~--------~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (465)
...|++++|.+.+++.. +. .| +...+..+..++...|++++|+..|+++.+. .+.+...+..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHH
Confidence 77899999999999988 43 44 4567888899999999999999999999863 344678899999999
Q ss_pred HhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHH
Q 012360 365 SRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 442 (465)
...|++++|.+.|++... .| +...|..+..++...|++++ ++.|+++++.+|+++..|..++.++.+.|++++|...
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998754 34 77889999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 012360 443 RRNMKEL 449 (465)
Q Consensus 443 ~~~~~~~ 449 (465)
+++..+.
T Consensus 557 ~~~al~l 563 (681)
T 2pzi_A 557 LDEVPPT 563 (681)
T ss_dssp HHTSCTT
T ss_pred HHhhccc
Confidence 9976543
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.06 E-value=6.4e-10 Score=85.93 Aligned_cols=98 Identities=9% Similarity=0.018 Sum_probs=78.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
+...+..+...+.+.|++++|...|+++.. .| ++..|..+..++...|++++|+..|+++++++|+++.+|..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 455667777778888888888888877644 33 6677888888888888888888888888888888888888888888
Q ss_pred hhcCChHHHHHHHHHHHHhc
Q 012360 431 ALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 431 ~~~g~~~~a~~~~~~~~~~~ 450 (465)
...|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888776654
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.06 E-value=1.5e-09 Score=81.34 Aligned_cols=109 Identities=7% Similarity=-0.022 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSAC 396 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 396 (465)
..+......+.+.|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|+..+++... +.+...|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45666677777777777777777777642 234566677777777777777777777776543 23556677777777
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
...|++++|++.|+++++++|+++.++..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777888888888888888888777766666554
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=3e-09 Score=87.74 Aligned_cols=131 Identities=7% Similarity=0.003 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (465)
...+...+...|++++|...|++..+. .| +...+..+..++...|++++|+..|+++.+. .+.+...+..+..+|
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 344788899999999999999999887 45 5678889999999999999999999999853 244677888888888
Q ss_pred HhcCC--HHHHHHHHHhCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 012360 365 SRAGL--LYQAEEFIKIMPAED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 365 ~~~g~--~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
...|+ ...+...++.+...+ ....+.....++...|++++|+..|++++++.|++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 76654 445666777665322 223445566677788999999999999999999753
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=1.2e-08 Score=84.26 Aligned_cols=175 Identities=9% Similarity=-0.073 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CChhhHHHHHHHHHHcC----ChHHHHHHHHHH
Q 012360 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-KDVVTWTTMIEGLANYG----LGNEALRVFYQM 309 (465)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m 309 (465)
+|...|++..+.| ++..+..+...|...+++++|...|++..+ .++..+..|...|.. + ++++|..+|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3455555555543 455666666777777777777777766543 355666667777666 5 889999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCC---hhhHHHHHHHHHh----cCCHHHHHHHHH
Q 012360 310 ERKGIKPNEATFVSVLAACRH----SGLITEGCQLFRRMGGVYRVQPT---IEHFVCLVDLLSR----AGLLYQAEEFIK 378 (465)
Q Consensus 310 ~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~ 378 (465)
.+.| +...+..|...|.. .+++++|+.+|++..+. .|+ +..+..|...|.. .+++++|..+|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7765 56677778888876 78999999999999854 332 6778888888888 789999999999
Q ss_pred hCCCC-CccchHHHHHHHHHhc-C-----ChHHHHHHHHHHHHhCCCC
Q 012360 379 IMPAE-DKFISYKALLSACITY-S-----EFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 379 ~~~~~-~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~p~~ 419 (465)
+.... +++..+..|...|... | ++++|+..|+++.+.+...
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 87654 5777888888888653 3 8999999999999987543
No 109
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.04 E-value=4.3e-08 Score=85.61 Aligned_cols=161 Identities=9% Similarity=-0.024 Sum_probs=122.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----hhhHH
Q 012360 288 TMIEGLANYGLGNEALRVFYQMERKGI-KPNEA----TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT----IEHFV 358 (465)
Q Consensus 288 ~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 358 (465)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678888999999999999876421 22221 2334666777788999999999998853111222 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-------CC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC------chhH
Q 012360 359 CLVDLLSRAGLLYQAEEFIKIMPA-------ED--KFISYKALLSACITYSEFDLGKKVANNMMKLGNQS------HEAY 423 (465)
Q Consensus 359 ~l~~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 423 (465)
.+...|...|++++|...++++.. .+ ...++..++..|.+.|++++|+..++++++..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999887652 11 23478899999999999999999999999865322 5579
Q ss_pred HHHHHHHhhcCC-hHHHHHHHHHHHH
Q 012360 424 VLLSNFYALEGH-WTEVAEARRNMKE 448 (465)
Q Consensus 424 ~~l~~~~~~~g~-~~~a~~~~~~~~~ 448 (465)
..++.++.+.|+ +++|...+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999987754
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=2.6e-09 Score=94.08 Aligned_cols=178 Identities=11% Similarity=0.076 Sum_probs=113.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHH
Q 012360 260 DMYSKCGSLEEALVTFYKTDC-----KD----VVTWTTMIEGLANYGLGNEALRVFYQMERK----GIKPN--EATFVSV 324 (465)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~l 324 (465)
..|...|++++|...|.+... .+ ..+|+.+...|...|++++|...+++..+. | .|. ..++..+
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~l 122 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRA 122 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 344555666666555544321 11 235666777777778888888777775432 2 121 2466777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CCc----cchHHHH
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVYRVQP----TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----EDK----FISYKAL 392 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l 392 (465)
...|.. |++++|+..|++......-.. ...++..+...|.+.|++++|...|++... .++ ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 778877 888888888888764211000 145677788888888898888888887643 111 1245666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchh-----HHHHHHHHhhcCChHHHHH
Q 012360 393 LSACITYSEFDLGKKVANNMMKLGNQSHEA-----YVLLSNFYALEGHWTEVAE 441 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 441 (465)
+.++...|++++|+..|++++ ..|..... ...++.++ ..|+.+.+..
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 667777789999999999988 77765432 33445544 5666666555
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.03 E-value=3.7e-09 Score=101.73 Aligned_cols=148 Identities=12% Similarity=-0.038 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 012360 297 GLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375 (465)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 375 (465)
|++++|...+++..+. .| +...+..+...+...|++++|...++++.+. .+.+...+..+..+|...|++++|.+
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555555544433 22 2344444555555555555555555555431 12234444455555555555555555
Q ss_pred HHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhc---CChHHHHHHHHHHHH
Q 012360 376 FIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE---GHWTEVAEARRNMKE 448 (465)
Q Consensus 376 ~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 448 (465)
.+++... . .+...+..+..++...|++++|++.++++++..|+++..+..++.++... |++++|.+.+++..+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 5544322 1 23344455555555555555555555555555555555555555555555 555555555554433
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.02 E-value=1.2e-08 Score=85.28 Aligned_cols=184 Identities=13% Similarity=-0.038 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC-C-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hh---hHHH
Q 012360 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT-Q-DAFVKTALIDMYSKCGSLEEALVTFYKTDC--KD-VV---TWTT 288 (465)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~---~~~~ 288 (465)
...+..+...+...|++++|...|+.+.+.... + ....+..+..+|.+.|++++|+..|++..+ |+ .. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345556667788999999999999999886422 1 235778899999999999999999988652 32 22 4555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 012360 289 MIEGLAN------------------YGLGNEALRVFYQMERKGIKPNEA-TFVSVLAACRHSGLITEGCQLFRRMGGVYR 349 (465)
Q Consensus 289 l~~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 349 (465)
+..++.. .|++++|...|+++.+. .|+.. ........ ..+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH-----
Confidence 5555554 57899999999999987 56543 22211110 0001111
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc----cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK----FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 350 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
......+...|.+.|++++|...|+.+.. .|+ ...+..++.++.+.|++++|++.++.+...+|++..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 11223567788899999999999988754 333 246788889999999999999999999988887764
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.01 E-value=6.8e-09 Score=85.94 Aligned_cols=130 Identities=10% Similarity=-0.064 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (465)
.+..+...+...|++++|...|++.. .|+...+..+..++...|++++|+..++++... .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 45566677788888888888887663 567778888888888888888888888888753 244567778888888
Q ss_pred HhcCCHHHHHHHHHhCCC--CCcc----------------chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 012360 365 SRAGLLYQAEEFIKIMPA--EDKF----------------ISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~--~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
...|++++|.+.|++... +.+. ..+..+..++...|++++|.+.++++++..|.+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 888888888888877533 1122 5677788888888888888888888888888763
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.00 E-value=3.1e-09 Score=93.58 Aligned_cols=196 Identities=9% Similarity=-0.006 Sum_probs=148.3
Q ss_pred cchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 012360 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK-CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307 (465)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 307 (465)
..|++++|..++++..+... .. +.+ .++++.|...|.+ ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 46788888888888776421 11 112 5788888887654 4667888999999999998
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC---CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 012360 308 QMERK----GIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVY---RVQP-TIEHFVCLVDLLSRAGLLYQAEEFIK 378 (465)
Q Consensus 308 ~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 378 (465)
+..+. |-.+. ..+|..+..+|...|++++|+..|++..+.. +... ...++..+...|.. |++++|...++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87653 21111 3478888899999999999999999876421 1111 24577888889988 99999999998
Q ss_pred hCCC----CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc------hhHHHHHHHHhhcCChHHHHHHHH
Q 012360 379 IMPA----ED----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH------EAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 379 ~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
+... .+ ...++..+...+...|++++|+..|+++++..|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7643 11 145688899999999999999999999999765443 257778888889999999999999
Q ss_pred HHH
Q 012360 445 NMK 447 (465)
Q Consensus 445 ~~~ 447 (465)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 876
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.99 E-value=2.8e-07 Score=86.26 Aligned_cols=354 Identities=7% Similarity=-0.022 Sum_probs=215.8
Q ss_pred hcC-ChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCC-hHHH
Q 012360 61 DFS-DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE-MDEA 138 (465)
Q Consensus 61 ~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 138 (465)
+.| +++.|..+|+++... -|. ++.+.+..+|++.+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488899999988764 344 8999999999999885 4688899888887777663 4556
Q ss_pred HHHHHhh----CCCC-CchhHHHHHHHHH----hcCChHHHHHHHHHhhc-C--Ch-HHHHHHHHHHHHc----------
Q 012360 139 LRLFDEM----GSRR-NIVSLNILINGYI----DMELVDLAREVFDEIVD-K--DI-VLWRSMMHGCVKA---------- 195 (465)
Q Consensus 139 ~~~~~~~----~~~~-~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~-~--~~-~~~~~l~~~~~~~---------- 195 (465)
..+|+.. |..| +...|...+..+. ..++.+.+.++|++.+. | +. ..|..... +...
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHH
Confidence 6667665 4333 5567777776654 35678889999998855 2 11 22332222 1111
Q ss_pred ----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc----h---hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 012360 196 ----KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL----S---NLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264 (465)
Q Consensus 196 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (465)
+.+..|..+++.+...-...+...|...+.--... . ..+.+..+|++++... +.+...|...+..+.+
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 12233444444443310011223444433332111 1 1345677888887753 5567788888888889
Q ss_pred cCCHHHHHHHHhcCCC-C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHh
Q 012360 265 CGSLEEALVTFYKTDC-K-DVVTWTTMIEGLANYGLGNEALRVFYQMERKG---------IKP---NEATFVSVLAACRH 330 (465)
Q Consensus 265 ~~~~~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---------~~p---~~~~~~~l~~~~~~ 330 (465)
.|+.+.|..+|++... | +...|. .|....+.++. ++.+.+.- ..+ ....|...+....+
T Consensus 226 ~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp TTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 9999999999976442 3 222222 23322222222 33332210 011 12345666666667
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG-LLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKK 407 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~ 407 (465)
.++.+.|..+|+++ ... ..+...|...+..-...+ +.+.|..+|+.... -| ++..|...+....+.|+.+.|..
T Consensus 299 ~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 78899999999999 331 234445543333333333 69999999987643 22 34456667777788999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 408 VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 408 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
+|+++ +.....|...+..-...|+.+.+..+++++.+
T Consensus 376 l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 376 LFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99997 34566788888888888999999998887764
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.98 E-value=4.3e-09 Score=78.80 Aligned_cols=97 Identities=10% Similarity=0.109 Sum_probs=88.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
...+......|.+.|++++|.+.|++... . .+...|..+..++...|++++|+..++++++++|+++.+|..++.++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 56677889999999999999999998754 3 477889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHhc
Q 012360 432 LEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 432 ~~g~~~~a~~~~~~~~~~~ 450 (465)
..|++++|.+.+++..+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 9999999999999887653
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.98 E-value=2.2e-08 Score=87.52 Aligned_cols=163 Identities=7% Similarity=-0.059 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC--CCCC--hh
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-E----ATFVSVLAACRHSGLITEGCQLFRRMGGVYR--VQPT--IE 355 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~ 355 (465)
.+...+..+...|++++|.+.+.+..+...... . ..+..+...+...|++++|+..++++..... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344556677888889999888888776532211 1 1234455667788899999999998874211 1121 44
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC----CCc-----cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC------Cc
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPA----EDK-----FISYKALLSACITYSEFDLGKKVANNMMKLGNQ------SH 420 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 420 (465)
+++.+...|...|++++|...+++... .++ ..++..++..|...|++++|+..++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788889999999999999999887641 221 257888999999999999999999999886422 14
Q ss_pred hhHHHHHHHHhhcCChHHH-HHHHHHHH
Q 012360 421 EAYVLLSNFYALEGHWTEV-AEARRNMK 447 (465)
Q Consensus 421 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 447 (465)
.+|..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788999999999999999 77777654
No 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.97 E-value=1.5e-09 Score=83.91 Aligned_cols=100 Identities=11% Similarity=-0.046 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHH
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACI 397 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 397 (465)
.+..+...+...|++++|+..|+++... .+.+...+..+..+|...|++++|...|++... +.++..+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3444445555555555555555555431 122444444555555555555555555554322 223444555555555
Q ss_pred hcCChHHHHHHHHHHHHhCCCCch
Q 012360 398 TYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
..|++++|+..|+++++..|+++.
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCc
Confidence 555555555555555555554443
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.96 E-value=9.3e-09 Score=81.20 Aligned_cols=128 Identities=5% Similarity=-0.030 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSAC 396 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 396 (465)
..+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|.+.+++... +.+...|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34566667777788888888888887752 234567777788888888888888888877543 23566788888999
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH--HhhcCChHHHHHHHHHHHH
Q 012360 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF--YALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~ 448 (465)
...|++++|+..++++++..|.+...+..+..+ +...|++++|...+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998877555444 8888999999999987653
No 120
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.96 E-value=2.8e-08 Score=81.81 Aligned_cols=119 Identities=11% Similarity=-0.037 Sum_probs=54.7
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 012360 258 LIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGL 333 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~ 333 (465)
+..+|...|++++|...|++.. +.+...+..+...+...|++++|...|++..+. .| +..++..+..++...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhH
Confidence 4455555555555555554433 223445555555555555555555555555554 23 23445555555443332
Q ss_pred --HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 334 --ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 334 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
.+.+...++.... ..|....+..+..++...|++++|...|++..
T Consensus 138 ~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 138 QEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2233333333321 11222223333444455555566665555543
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.95 E-value=5.2e-07 Score=78.15 Aligned_cols=225 Identities=11% Similarity=0.016 Sum_probs=139.3
Q ss_pred hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccch--hhHhHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc---CC
Q 012360 198 PEEALELFKKMIDEGVTPD-EEVMVSVLSACSSLS--NLQYGRLVHRFILQNNITQDAFVKTALIDMY----SKC---GS 267 (465)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 267 (465)
.++|++.++.++.. .|+ ...++.--..+...+ ++++++..++.+...+ +-+..+|+.-..++ ... ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 34566666666553 232 233444444444444 6666666666665543 22333343333322 333 56
Q ss_pred HHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 012360 268 LEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGN--EALRVFYQMERKGIKPNEATFVSVLAACRHSGL------ITE 336 (465)
Q Consensus 268 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~------~~~ 336 (465)
+++++.+++++. +.|..+|+.-.-.+.+.+.++ ++++.++++.+.. .-|...|+.-...+...+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 667777666654 235556666666666677777 8888888888763 2255666666555666565 788
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHhCCC-----CCccchHHHHHHHHHhcCChHHHHHHHH
Q 012360 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ-AEEFIKIMPA-----EDKFISYKALLSACITYSEFDLGKKVAN 410 (465)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 410 (465)
+++.++++... .+-|...|+.+...+.+.|+... +..+..++.. ..++..+..++..+.+.|+.++|+++++
T Consensus 205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 88888888752 34567778777777878777444 4456665543 1255667778888888888888888888
Q ss_pred HHHH-hCCCCchhHHHHHH
Q 012360 411 NMMK-LGNQSHEAYVLLSN 428 (465)
Q Consensus 411 ~~~~-~~p~~~~~~~~l~~ 428 (465)
.+.+ .+|.....|...+.
T Consensus 283 ~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHHHh
Confidence 8886 67887776665544
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=1.2e-08 Score=81.55 Aligned_cols=156 Identities=7% Similarity=-0.108 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 012360 255 KTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA-CRH 330 (465)
Q Consensus 255 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~ 330 (465)
+......+...|++++|...|++... .+...+..+...+...|++++|...+++..+. .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34455666777777777777777663 34556777777777777777777777776554 3333322222111 112
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc---cchHHHHHHHHHhcCChHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK---FISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~ 406 (465)
.+....|+..++++.+. .+.+...+..+..++...|++++|...|+++.. .|+ ...+..++..+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22333467777777642 233567777788888888888888888876543 332 446777888888888888888
Q ss_pred HHHHHHHH
Q 012360 407 KVANNMMK 414 (465)
Q Consensus 407 ~~~~~~~~ 414 (465)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 123
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.92 E-value=1.7e-07 Score=81.15 Aligned_cols=216 Identities=9% Similarity=-0.016 Sum_probs=169.4
Q ss_pred cchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhcCCC---CChhhHHHHHHHH----HHc---
Q 012360 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG--SLEEALVTFYKTDC---KDVVTWTTMIEGL----ANY--- 296 (465)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~----~~~--- 296 (465)
+....++|...+..++..+ +-+..+++.-..++...+ +++++++.++.+.. .+..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 3344568999999998876 445667788888888888 99999999988663 3555676655555 455
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCC-----
Q 012360 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT--EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL----- 369 (465)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 369 (465)
+++++++.+++++.+.. +-+...+..-...+.+.|.++ ++++.++++.+. .+-+...|+.-...+.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 78999999999999873 336778877777778888888 999999999963 34567777777777777776
Q ss_pred -HHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChH-HHHHHHHHHHHhC---CCCchhHHHHHHHHhhcCChHHHHHH
Q 012360 370 -LYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFD-LGKKVANNMMKLG---NQSHEAYVLLSNFYALEGHWTEVAEA 442 (465)
Q Consensus 370 -~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~ 442 (465)
++++++.++.+.. . .|...|+.+...+.+.|+.. .+..+.+++.+.+ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8889988887643 3 47888999888888888744 4667888887776 88889999999999999999999999
Q ss_pred HHHHHH
Q 012360 443 RRNMKE 448 (465)
Q Consensus 443 ~~~~~~ 448 (465)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999864
No 124
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.92 E-value=6.9e-08 Score=83.90 Aligned_cols=159 Identities=11% Similarity=-0.011 Sum_probs=86.0
Q ss_pred HHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhhHH-HHHHHHH
Q 012360 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDVVTWT-TMIEGLA 294 (465)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~-~l~~~~~ 294 (465)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++.. |+..... .....+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 334444444555556666666665555543 23455566666666666777777666666553 3222111 1122244
Q ss_pred HcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHH
Q 012360 295 NYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373 (465)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 373 (465)
..++.++|...+++..+. .| +...+..+...+...|++++|+..|+++.+...-..+...+..++..+...|+.++|
T Consensus 197 ~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred hhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 555566666666666655 33 345566666666666677777666666664311111144555566666666665555
Q ss_pred HHHHHh
Q 012360 374 EEFIKI 379 (465)
Q Consensus 374 ~~~~~~ 379 (465)
...+++
T Consensus 275 ~~~~r~ 280 (287)
T 3qou_A 275 ASXYRR 280 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.91 E-value=1.4e-08 Score=76.75 Aligned_cols=116 Identities=8% Similarity=-0.032 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHH
Q 012360 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSA 395 (465)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 395 (465)
...+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.+++... +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 456666777777777777777777777642 233566677777777777777777777776543 2355677788888
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCC
Q 012360 396 CITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435 (465)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 435 (465)
+...|++++|++.++++++..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888889999999999888888888888888888877664
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.91 E-value=1.4e-08 Score=76.40 Aligned_cols=118 Identities=7% Similarity=-0.106 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHH
Q 012360 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSA 395 (465)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 395 (465)
...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|.+.+++... +.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 456666777777888888888888887742 234566777788888888888888888876543 2356678888889
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChH
Q 012360 396 CITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWT 437 (465)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 437 (465)
+...|++++|...++++++..|.++..+..++.++.+.|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999998888753
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.90 E-value=2.2e-08 Score=74.60 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHH
Q 012360 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSA 395 (465)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 395 (465)
...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|..+++++.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 355666677777777888888777777642 234566677777777788888888877776543 2355677888888
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 396 CITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999999998888888888776654
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.89 E-value=1.1e-08 Score=91.18 Aligned_cols=126 Identities=10% Similarity=-0.012 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----------------hhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT----------------IEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
..+..+...+.+.|++++|+..|+++... .|+ ...+..+..+|.+.|++++|...++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666777777777777776642 232 46788888999999999999999887654
Q ss_pred --CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHH-HHHHHHHH
Q 012360 383 --EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV-AEARRNMK 447 (465)
Q Consensus 383 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 447 (465)
+.+...|..+..++...|++++|+..|++++++.|.+..++..++.++.+.|++++| ...++.|.
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336778899999999999999999999999999999999999999999999999998 44555553
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.89 E-value=6.5e-08 Score=79.93 Aligned_cols=126 Identities=9% Similarity=-0.078 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 012360 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333 (465)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 333 (465)
.+..+...+...|++++|...|++...++...+..+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 455677888899999999999999988888899999999999999999999999988763 3356788889999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCC----------------hhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 334 ITEGCQLFRRMGGVYRVQPT----------------IEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
+++|+..|+++.+.. +.+ ...+..+..+|...|++++|.+.++....
T Consensus 87 ~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999998631 222 26788899999999999999999988654
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.88 E-value=6.3e-09 Score=83.32 Aligned_cols=126 Identities=12% Similarity=0.105 Sum_probs=84.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHH-HHhcCCH-
Q 012360 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL-LSRAGLL- 370 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 370 (465)
+...|++++|...+++..+.. +.+...+..+...+...|++++|+..|+++.+. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 345677777887887776652 234567777777788888888888888877742 23355666667777 6677777
Q ss_pred -HHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 371 -YQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 371 -~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
++|...++++.. .| +...+..+...+...|++++|+..++++++..|+++.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 777777776543 23 4566777777777778888888888888877777655
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.86 E-value=6.5e-09 Score=90.06 Aligned_cols=189 Identities=9% Similarity=-0.122 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAA 327 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~ 327 (465)
...+..+...+...|++++|...|++.. +.+...|..+...|...|++++|...+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3455556666666677777766666543 235566777777777778888888887777765 34 45677777788
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHH
Q 012360 328 CRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 406 (465)
+...|++++|+..|+++.+. .|+ ...+...+....+..+...... .......++......+.. + ..|++++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHH
Confidence 88888888888888877642 121 1111111211111111111111 122222334444333332 2 368889999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhhc-CChHHHHHHHHHHHH
Q 012360 407 KVANNMMKLGNQSHEAYVLLSNFYALE-GHWTEVAEARRNMKE 448 (465)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 448 (465)
+.++++.+..|++......+...+.+. +.+++|.++|++..+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999988888877777777666665 678889988887754
No 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.86 E-value=9e-09 Score=79.01 Aligned_cols=99 Identities=10% Similarity=-0.019 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHh
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACIT 398 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 398 (465)
+..+...+...|++++|+..|+++... .+.+...|..+..+|.+.|++++|...|++... +.++..+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 334444555555555555555555431 122344444555555555555555555554322 2234444455555555
Q ss_pred cCChHHHHHHHHHHHHhCCCCch
Q 012360 399 YSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.|++++|+..|+++++..|+++.
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGG
T ss_pred cCCHHHHHHHHHHHHHhCCCCcc
Confidence 55555555555555555554444
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.83 E-value=1.3e-07 Score=80.01 Aligned_cols=137 Identities=9% Similarity=-0.104 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC--hhhHHHHHHHH
Q 012360 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT--IEHFVCLVDLL 364 (465)
Q Consensus 287 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 364 (465)
..+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34556666777777777777766654 354434455556777788888888888755531 1 111 23566777888
Q ss_pred HhcCCHHHHHHHHHhCCCCC-----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 012360 365 SRAGLLYQAEEFIKIMPAED-----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 428 (465)
.+.|++++|+..|++....+ ....+.....++.+.|+.++|..+|+++...+|. ...+..|..
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 88888888888888764322 2234566677778888888888888888888888 665555543
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.9e-08 Score=75.35 Aligned_cols=92 Identities=10% Similarity=-0.052 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
+..+...+.+.|++++|...|++... +.+...|..+..++...|++++|+..++++++.+|.++..+..++.++...|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 34444445555555555555544322 1234445555555555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHHH
Q 012360 435 HWTEVAEARRNMKE 448 (465)
Q Consensus 435 ~~~~a~~~~~~~~~ 448 (465)
++++|...+++..+
T Consensus 87 ~~~~A~~~~~~al~ 100 (126)
T 3upv_A 87 EYASALETLDAART 100 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.82 E-value=5.1e-08 Score=75.18 Aligned_cols=104 Identities=12% Similarity=0.050 Sum_probs=90.0
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHH
Q 012360 315 KPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKA 391 (465)
Q Consensus 315 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 391 (465)
.|+ ...+..+...+.+.|++++|+..|+++... .+.+...|..+..+|...|++++|...|++... +.++..|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 454 357778888999999999999999999853 344688899999999999999999999998754 347888999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 012360 392 LLSACITYSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
+..++...|++++|+..|++++++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999998765
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.82 E-value=3e-08 Score=72.23 Aligned_cols=100 Identities=10% Similarity=0.036 Sum_probs=82.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC--CchhHHHHHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ--SHEAYVLLSN 428 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 428 (465)
+...+..+...+...|++++|...+++... +.+...+..+...+...|++++|++.++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 455666777788888888888888877643 335667888888999999999999999999999999 8889999999
Q ss_pred HHhhc-CChHHHHHHHHHHHHhcCC
Q 012360 429 FYALE-GHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 429 ~~~~~-g~~~~a~~~~~~~~~~~~~ 452 (465)
++... |++++|.+.+++.......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999988765443
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.81 E-value=5.6e-07 Score=78.45 Aligned_cols=202 Identities=7% Similarity=-0.082 Sum_probs=136.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 012360 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF---VKTALIDMYSKCGSLEEALVTFYKTDCK 281 (465)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 281 (465)
+..+......|+..+...+...+.-.-+ .+.......+.. .+...+..+...|++++|...+++....
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3444433346776666666655542211 111111112222 2333467788899999999999875431
Q ss_pred ---Ch------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 012360 282 ---DV------VTWTTMIEGLANYGLGNEALRVFYQMERKGIK-PN----EATFVSVLAACRHSGLITEGCQLFRRMGGV 347 (465)
Q Consensus 282 ---~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (465)
+. ..+..+...+...+++++|...+++..+.... ++ ..+++.+..+|...|++++|+..++++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 12334666677778999999999999874322 22 236888999999999999999999998731
Q ss_pred C----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 012360 348 Y----RVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFISYKALLSACITYSE-FDLGKKVANNMM 413 (465)
Q Consensus 348 ~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 413 (465)
. +..+ ...++..+...|.+.|++++|.+.+++... .. -..+|..++.++.+.|+ +++|.+.+++++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 1112 244778899999999999999999887643 11 24578889999999995 699999999998
Q ss_pred Hh
Q 012360 414 KL 415 (465)
Q Consensus 414 ~~ 415 (465)
+.
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.79 E-value=2.2e-08 Score=77.38 Aligned_cols=109 Identities=11% Similarity=0.047 Sum_probs=91.2
Q ss_pred HHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 339 QLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 339 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
..++++.. ..| +...+..+...+.+.|++++|...|+.+.. +.+...|..+..++...|++++|+..|+++++.
T Consensus 8 ~~~~~al~---~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 8 GTIAMLNE---ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CSHHHHTT---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHc---CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555553 234 566777888899999999999999988754 347778889999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 416 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+|+++..+..++.+|...|++++|...+++..+..
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999887654
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.76 E-value=2.6e-08 Score=73.90 Aligned_cols=95 Identities=12% Similarity=-0.081 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 012360 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 355 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 432 (465)
..+..+...+.+.|++++|...|++... .| +...|..+..++...|++++|+..++++++++|+++..+..++.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3456677888999999999999988754 33 777888999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHh
Q 012360 433 EGHWTEVAEARRNMKEL 449 (465)
Q Consensus 433 ~g~~~~a~~~~~~~~~~ 449 (465)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999987654
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.75 E-value=2.2e-07 Score=78.55 Aligned_cols=183 Identities=9% Similarity=-0.083 Sum_probs=129.6
Q ss_pred hcCCHHHHHHHHhcCCC---CChhhHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCC----------------
Q 012360 264 KCGSLEEALVTFYKTDC---KDVVTWTTM-------IEGLANYGLGNEALRVFYQMERKGIKPN---------------- 317 (465)
Q Consensus 264 ~~~~~~~a~~~~~~~~~---~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~m~~~g~~p~---------------- 317 (465)
..++...|.+.|.++.. .....|..+ ...+...++..+++..+.+-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 35666666666665442 233455554 3444444445555555554433 2222
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCc----cc
Q 012360 318 ------EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK----FI 387 (465)
Q Consensus 318 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~ 387 (465)
......+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.....++ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123344667788999999999999999853 35433666777789999999999999997765442 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhC--CC-CchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLG--NQ-SHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++.....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67788999999999999999999998533 33 445788999999999999999999999987654
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=5.3e-08 Score=76.76 Aligned_cols=111 Identities=9% Similarity=-0.015 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHH
Q 012360 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLS 394 (465)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 394 (465)
+...+..+...+...|++++|+..|+++.+. .+.+...+..+..+|.+.|++++|...+++... +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567888889999999999999999999853 244778889999999999999999999988754 336778999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
++...|++++|+..|++++++.|++...+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999998865554433
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.75 E-value=7.6e-08 Score=73.15 Aligned_cols=94 Identities=10% Similarity=-0.034 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
...+..+...+...|++++|...|+.... +.+...|..++.++...|++++|+..++++++.+|.++..+..++.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 33444444444444444444444443322 1133344444555555555555555555555555555555555555555
Q ss_pred hcCChHHHHHHHHHHH
Q 012360 432 LEGHWTEVAEARRNMK 447 (465)
Q Consensus 432 ~~g~~~~a~~~~~~~~ 447 (465)
..|++++|...+++..
T Consensus 89 ~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 89 EMESYDEAIANLQRAY 104 (137)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5555555555555443
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.74 E-value=3.5e-08 Score=73.92 Aligned_cols=93 Identities=8% Similarity=0.011 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch-------hHHHH
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE-------AYVLL 426 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 426 (465)
.+..+...+.+.|++++|++.|++... .| +...|..+..+|...|++++|++.+++++++.|.+.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344455555555555555555554432 22 4445555666666666666666666666665554332 34555
Q ss_pred HHHHhhcCChHHHHHHHHHHHH
Q 012360 427 SNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 427 ~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
+.++...|++++|++.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666666666666665543
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.74 E-value=6.8e-08 Score=78.84 Aligned_cols=95 Identities=7% Similarity=-0.080 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 012360 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 355 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 432 (465)
..+..+..+|...|++++|...++.... +.+...+..+..++...|++++|+..|+++++..|.++.++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 5677788888888888888888887643 33667888899999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHHHHh
Q 012360 433 EGHWTEVA-EARRNMKEL 449 (465)
Q Consensus 433 ~g~~~~a~-~~~~~~~~~ 449 (465)
.|+.+++. ..++.|...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 99888877 555555443
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.74 E-value=9.1e-07 Score=77.10 Aligned_cols=164 Identities=5% Similarity=-0.140 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCh------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--H
Q 012360 253 FVKTALIDMYSKCGSLEEALVTFYKTDC---KDV------VTWTTMIEGLANYGLGNEALRVFYQMERKGI---KPN--E 318 (465)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~ 318 (465)
..+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567778888999999888865331 111 2234455667788899999999998875421 122 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----c
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----K 385 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~ 385 (465)
.+++.+...|...|++++|+..++++.+.....|+ ..++..+...|...|++++|.+.+++... .+ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999999998722111122 25788899999999999999999987643 11 1
Q ss_pred cchHHHHHHHHHhcCChHHH-HHHHHHHHHhC
Q 012360 386 FISYKALLSACITYSEFDLG-KKVANNMMKLG 416 (465)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~ 416 (465)
..+|..++.++...|++++| ...++++....
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 45688899999999999999 88899887743
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.73 E-value=6.9e-08 Score=73.98 Aligned_cols=98 Identities=9% Similarity=0.003 Sum_probs=82.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
+...+..+...+.+.|++++|...|+.+.. .| +...|..+..++...|++++|+..|+++++.+|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 455666778888899999999999887643 33 6777888888889999999999999999999999999899999999
Q ss_pred hhcCChHHHHHHHHHHHHhc
Q 012360 431 ALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 431 ~~~g~~~~a~~~~~~~~~~~ 450 (465)
...|++++|...+++..+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999998876554
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.72 E-value=1.3e-07 Score=69.46 Aligned_cols=109 Identities=13% Similarity=-0.019 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSAC 396 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 396 (465)
..+..+...+...|++++|...++++... .+.+...+..+...+...|++++|...+++... +.+...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34445555555666666666666665532 122444555555555556666666655554432 12344555666666
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
...|++++|...++++.+..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 666666666666666666666666555554443
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.71 E-value=9.1e-08 Score=71.56 Aligned_cols=111 Identities=8% Similarity=-0.072 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSAC 396 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~ 396 (465)
..+..+...+.+.|++++|+..|++..+. .+.+...+..+..++.+.|++++|...+++... .| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45666777788888888888888888752 234577788888888888888888888877644 33 567788888999
Q ss_pred HhcCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHh
Q 012360 397 ITYSEFDLGKKVANNMMKLG------NQSHEAYVLLSNFYA 431 (465)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 431 (465)
...|++++|+..++++++.. |.+..+...+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999988 777776666665543
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.70 E-value=9.6e-08 Score=76.34 Aligned_cols=121 Identities=11% Similarity=0.068 Sum_probs=93.9
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHH-HHhcCCh--H
Q 012360 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSA-CITYSEF--D 403 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~-~~~~~~~--~ 403 (465)
...|++++|+..+++.... .+.+...+..+...|...|++++|...|++... +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4567888888888888753 244677888888889999999999998887654 3356677777777 6788888 9
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 404 LGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 404 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
+|+..++++++..|.++..+..++.++...|++++|...++++.+...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 999999999999998888888999999999999999999988776543
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.70 E-value=1.3e-07 Score=74.57 Aligned_cols=96 Identities=11% Similarity=-0.121 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHH
Q 012360 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362 (465)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (465)
...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++.+. .+.+...+..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3455566666666667777777666666552 224556666666666667777777766666642 1234556666666
Q ss_pred HHHhcCCHHHHHHHHHhCC
Q 012360 363 LLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~~ 381 (465)
+|...|++++|.+.|++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 6666677777766666553
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=1.3e-07 Score=71.29 Aligned_cols=100 Identities=12% Similarity=0.022 Sum_probs=89.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 012360 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428 (465)
Q Consensus 351 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 428 (465)
+.+...+..+...+...|++++|.+.+++... .| +...+..+...+...|++++|+..++++++..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34567788899999999999999999998654 33 67788999999999999999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHHHHHhc
Q 012360 429 FYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 429 ~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
++.+.|++++|...+++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999887653
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=3.3e-07 Score=70.54 Aligned_cols=112 Identities=9% Similarity=-0.080 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHH
Q 012360 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYK 390 (465)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~ 390 (465)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++... .| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3455666666667777777777777777632 344 45666666677777777777777665433 22 455667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
.+..++...|++++|...++++++..|.+...+..+.....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777778888888888888888888887776666655543
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.69 E-value=1.5e-07 Score=77.06 Aligned_cols=129 Identities=7% Similarity=-0.029 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCC---CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC-----c
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVY---RVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED-----K 385 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-----~ 385 (465)
..+..+...+...|++++|...+++..... +..+ ...++..+...+...|++++|.+.+++... .+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 344445555555555555555555543210 1111 233444555555555555555555544321 11 1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCc----hhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 386 FISYKALLSACITYSEFDLGKKVANNMMKLG--NQSH----EAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
...+..+...+...|++++|+..++++++.. ..++ .++..++.++...|++++|...+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2235555666666666666666666666532 1111 124566666666677777666666554
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.68 E-value=1.6e-07 Score=69.05 Aligned_cols=97 Identities=7% Similarity=0.012 Sum_probs=86.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
....+..+...+...|++++|...+++... +.+...+..++..+...|++++|...++++++..|.++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345677888999999999999999998754 336778889999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHHh
Q 012360 431 ALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 431 ~~~g~~~~a~~~~~~~~~~ 449 (465)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988654
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=2.1e-07 Score=69.07 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=87.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
...+..+...+...|++++|.+.++++.. +.+..++..++..+...|++++|+..++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56788889999999999999999988754 3366788899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHhc
Q 012360 432 LEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 432 ~~g~~~~a~~~~~~~~~~~ 450 (465)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999887653
No 156
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=6e-07 Score=70.60 Aligned_cols=129 Identities=8% Similarity=-0.091 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHH
Q 012360 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363 (465)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (465)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..+++.... .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356667777888888888888888877752 235677778888888888999999888888753 24456778888888
Q ss_pred HHhcCCHHHHHHHHHhCCC-CC-ccchHH--HHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 364 LSRAGLLYQAEEFIKIMPA-ED-KFISYK--ALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~-~~-~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
+...|++++|...+++... .| +...+. ..+..+...|++++|++.+.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 8889999999988887643 23 334443 3334467788999999988887653
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=2.2e-07 Score=75.93 Aligned_cols=153 Identities=10% Similarity=-0.032 Sum_probs=96.2
Q ss_pred hcCCHHHHHH---HHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHH
Q 012360 264 KCGSLEEALV---TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER----KGIKPN-EATFVSVLAACRHSGLIT 335 (465)
Q Consensus 264 ~~~~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~~~~~ 335 (465)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+ .+..|. ...+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666665 44332222344566666667777777777777766554 121222 345667777788888888
Q ss_pred HHHHHHHHhhcCCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CCc----cchHHHHHHHHHhcCCh
Q 012360 336 EGCQLFRRMGGVYRVQP-----TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----EDK----FISYKALLSACITYSEF 402 (465)
Q Consensus 336 ~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~ 402 (465)
+|...+++......-.+ ....+..+...+...|++++|...+++... .++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887754211112 134566777788888888888888776532 111 23357778888889999
Q ss_pred HHHHHHHHHHHHhC
Q 012360 403 DLGKKVANNMMKLG 416 (465)
Q Consensus 403 ~~a~~~~~~~~~~~ 416 (465)
++|.+.++++++..
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888754
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.62 E-value=2e-07 Score=70.79 Aligned_cols=112 Identities=7% Similarity=-0.130 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHH
Q 012360 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLS 394 (465)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 394 (465)
+...+..+...+...|++++|+..|+++... .+.+...+..+..++...|++++|...++.... +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4567777778888888888888888887753 234567777888888888888888888877643 335667888888
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCC-----CchhHHHHHHHH
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQ-----SHEAYVLLSNFY 430 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 430 (465)
++...|++++|+..++++++..|+ +..+...+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 888999999999999999988876 444444444433
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=4.5e-07 Score=69.74 Aligned_cols=99 Identities=10% Similarity=0.040 Sum_probs=88.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc----cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 012360 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK----FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLL 426 (465)
Q Consensus 352 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 426 (465)
.+...+..+...+...|++++|.+.|++... .|+ ...|..+..++...|++++|+..++++++..|.++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 4567788899999999999999999998654 454 67788899999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhc
Q 012360 427 SNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 427 ~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+.++...|++++|...+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999887653
No 160
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.61 E-value=3.9e-07 Score=68.32 Aligned_cols=99 Identities=12% Similarity=0.007 Sum_probs=59.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-c---cchHHHHHH
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTI---EHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-K---FISYKALLS 394 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~---~~~~~~l~~ 394 (465)
.+...+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|...++.+.. .| + ...+..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 44556666777777777777766421 1122 3555666666677777777766665533 22 2 344566666
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSHEAY 423 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 423 (465)
++...|++++|+..|+++++..|+++...
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 66667777777777777777666665533
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.59 E-value=2.4e-07 Score=69.46 Aligned_cols=99 Identities=9% Similarity=0.003 Sum_probs=88.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 352 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
.+...+..+...+...|++++|...+++... +.+...+..++..+...|++++|+..++++++..|+++..+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 3466778889999999999999999998653 33677888999999999999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHHHHhc
Q 012360 430 YALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 430 ~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+...|++++|...+++..+..
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999887653
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.59 E-value=3e-05 Score=67.87 Aligned_cols=228 Identities=13% Similarity=0.058 Sum_probs=128.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch-hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-CHHHHH
Q 012360 196 KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS-NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC-G-SLEEAL 272 (465)
Q Consensus 196 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~ 272 (465)
+..++|++++++++..+.. +..+++.--..+...+ .++++...++.+.... +-+..+|+.-..++... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3445566666666553211 2333333333333344 3666666666666544 33444555444444444 4 666777
Q ss_pred HHHhcCCCC---ChhhHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------H
Q 012360 273 VTFYKTDCK---DVVTWTTMIEGLANYGLGN--------EALRVFYQMERKGIKPNEATFVSVLAACRHSGL-------I 334 (465)
Q Consensus 273 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-------~ 334 (465)
++++++.+. |..+|+--.-.+.+.+.++ ++++.++++.+.. .-|...|+.....+.+.+. +
T Consensus 146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHH
Confidence 777666543 4445554444444444444 7888888888763 2366777777777766665 6
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCH--------------------HHHHHHHHhCCCC--------Ccc
Q 012360 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL--------------------YQAEEFIKIMPAE--------DKF 386 (465)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~--------~~~ 386 (465)
+++++.++++.. ..+-|...|+.+-..+.+.|+. ....++...+... +.+
T Consensus 225 ~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 225 QDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 788888888774 2344677777777777766654 2333344444321 234
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHH-HhCCCCchhHHHHHH
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMM-KLGNQSHEAYVLLSN 428 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~ 428 (465)
..+..++..|...|+.++|.++++.+. +.+|.....|...+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 456667777777777777888887776 355666554444433
No 163
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.58 E-value=8.4e-08 Score=70.70 Aligned_cols=90 Identities=9% Similarity=0.045 Sum_probs=53.1
Q ss_pred cCCHHHHHHHHHHhhcCCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYR--VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~ 406 (465)
.|++++|+..|+++.+. + .+.+...+..+..+|...|++++|.+.|++... .| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46667777777777642 1 122345566666666666777777666666533 22 4555666666666666777777
Q ss_pred HHHHHHHHhCCCCch
Q 012360 407 KVANNMMKLGNQSHE 421 (465)
Q Consensus 407 ~~~~~~~~~~p~~~~ 421 (465)
..++++++..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 777666666666655
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.55 E-value=4e-07 Score=69.45 Aligned_cols=107 Identities=13% Similarity=0.036 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC-CccchHHHHHHHHHh
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE-DKFISYKALLSACIT 398 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~ 398 (465)
.+......+.+.|++++|+..|+++.+- .|+...- +..... .+...|..+..++.+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~--------------------~a~~~~~~~a~a~~n~g~al~~ 69 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPE--------------------EAFDHAGFDAFCHAGLAEALAG 69 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTT--------------------SCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcch--------------------hhhhhccchHHHHHHHHHHHHH
Confidence 3445556666777777777777777632 2321000 000000 023378888888888
Q ss_pred cCChHHHHHHHHHHHHh-------CCCCchhH----HHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 399 YSEFDLGKKVANNMMKL-------GNQSHEAY----VLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.|++++|+..+++++++ +|++...| +..+.++...|++++|+..|++..+.
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888888888888 89888888 89999999999999999988877653
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.53 E-value=3.4e-07 Score=85.18 Aligned_cols=125 Identities=13% Similarity=0.032 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----------------hhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT----------------IEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
..+..+...+.+.|++++|+..|+++.+. .|+ ...|..+..+|.+.|++++|+..++++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW---LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34555566666666666666666666532 122 46788888889999999999998887654
Q ss_pred --CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHH-HHHHH
Q 012360 383 --EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE-ARRNM 446 (465)
Q Consensus 383 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~ 446 (465)
+.+...|..+..+|...|++++|+..|++++++.|++..++..++.++.+.|+++++.+ .+++|
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33677888899999999999999999999999999999999999999999999988764 44544
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.51 E-value=5.3e-07 Score=67.55 Aligned_cols=109 Identities=4% Similarity=-0.039 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-c-------cchHH
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-K-------FISYK 390 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~-------~~~~~ 390 (465)
.+..+...+...|++++|...++++... .+.+...+..+...+...|++++|...+++... .| + ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4445555566666666666666666532 223445555566666666666666666655432 11 1 45667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
.++..+...|++++|.+.++++.+..| ++.....+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 777788888888888888888888877 4555555555443
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.50 E-value=1.6e-07 Score=87.73 Aligned_cols=119 Identities=5% Similarity=-0.045 Sum_probs=92.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCC
Q 012360 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSE 401 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 401 (465)
+...+.+.|++++|++.++++.+. .+.+...+..+..+|.+.|++++|.+.+++... +.+...|..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334556778888888888888753 233577788888888888888888888877643 3356778889999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHH--HhhcCChHHHHHHHH
Q 012360 402 FDLGKKVANNMMKLGNQSHEAYVLLSNF--YALEGHWTEVAEARR 444 (465)
Q Consensus 402 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 444 (465)
+++|++.++++++..|++...+..++.+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999888888888 888899999999888
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.50 E-value=3.9e-07 Score=68.32 Aligned_cols=97 Identities=8% Similarity=0.069 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-------chhHH
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS-------HEAYV 424 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 424 (465)
...+..+...+...|++++|...+++... +.+...+..++..+...|++++|+..++++++..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45677888999999999999999988654 3366788899999999999999999999999988766 77899
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 425 LLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 425 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.++.++...|++++|...+++..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999887754
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.49 E-value=4.2e-07 Score=65.94 Aligned_cols=100 Identities=12% Similarity=-0.024 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CC--ccchHHHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--ED--KFISYKALLS 394 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~~l~~ 394 (465)
..+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.+++... +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 44555566666666677776666666642 233455666666667777777777776665432 22 4556777777
Q ss_pred HHHhc-CChHHHHHHHHHHHHhCCCCc
Q 012360 395 ACITY-SEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 395 ~~~~~-~~~~~a~~~~~~~~~~~p~~~ 420 (465)
++... |++++|++.++++++..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77778 888888888888888777654
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.49 E-value=5.1e-07 Score=70.85 Aligned_cols=103 Identities=12% Similarity=-0.028 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC----------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYR----------------VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
...+......+.+.|++++|+..|.+...... .+.+...|..+..+|.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34566777888888888888888888774200 11123455566666666666666666666543
Q ss_pred C--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 012360 382 A--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 382 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
. +.+...|..++.++...|++++|+..|++++++.|+++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 3 22455566666666666666666666666666666665
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.49 E-value=7.1e-05 Score=65.22 Aligned_cols=169 Identities=11% Similarity=-0.005 Sum_probs=92.2
Q ss_pred HHcCChh-HHHHHHHHHHHcCCCCCHH-HHHHHHHHhccchh----------hHhHHHHHHHHHHcCCCCChhHHHHHHH
Q 012360 193 VKAKQPE-EALELFKKMIDEGVTPDEE-VMVSVLSACSSLSN----------LQYGRLVHRFILQNNITQDAFVKTALID 260 (465)
Q Consensus 193 ~~~g~~~-~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 260 (465)
.+.|.++ +|+++++.++.. .|+.. .++.--..+...+. ++++..+++.+.... +-+..+|+.-..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455544 678888888774 44433 33322222222222 566677777776654 345566665555
Q ss_pred HHHhcC--CHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 012360 261 MYSKCG--SLEEALVTFYKTDC---KDVVTWTTMIEGLANYGL-GNEALRVFYQMERKGIKPNEATFVSVLAACRHS--- 331 (465)
Q Consensus 261 ~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--- 331 (465)
++...+ .+++++.+++++.+ .|..+|+--.-.+...|. ++++++.+.++.+.. +-|...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 555655 36777777766552 355566665555666666 477777777777653 22445554444443333
Q ss_pred -----------CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc
Q 012360 332 -----------GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367 (465)
Q Consensus 332 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (465)
+.++++++.+.++... .+-|...|+.+-..+.+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSS
T ss_pred cccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 3456666666666632 233455555444444433
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.48 E-value=1.2e-06 Score=65.39 Aligned_cols=97 Identities=5% Similarity=-0.061 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-c-------cchHH
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-K-------FISYK 390 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~-------~~~~~ 390 (465)
.+..+...+.+.|++++|+..|+++.+. .+.+...|..+..+|...|++++|++.+++... .| + ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4445556666666666666666666532 123455566666666666666666666655432 11 1 12566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
.++.++...|++++|++.|+++++..|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 6778888889999999999999887775
No 173
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.48 E-value=0.00042 Score=60.68 Aligned_cols=66 Identities=9% Similarity=-0.073 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhccchh-------hHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 012360 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSN-------LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267 (465)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (465)
++++.++++.+..+. |...|+.....+.+.+. ++++.+.++...... +-+...++.+-..+.+.|+
T Consensus 185 eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 185 SELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 566666666655332 44555544444444443 455566665555543 3345555555444444443
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.48 E-value=1.9e-06 Score=64.45 Aligned_cols=93 Identities=11% Similarity=-0.016 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCc-c---chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC---chhHHHHHH
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA-EDK-F---ISYKALLSACITYSEFDLGKKVANNMMKLGNQS---HEAYVLLSN 428 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 428 (465)
+..+...+...|++++|.+.|+.+.. .|+ . ..+..++.++...|++++|+..++++++..|++ +.++..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34456667778888888887776643 332 2 366677777778888888888888888877777 566777888
Q ss_pred HHhhcCChHHHHHHHHHHHHh
Q 012360 429 FYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 429 ~~~~~g~~~~a~~~~~~~~~~ 449 (465)
++...|++++|...++++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888777654
No 175
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=1.3e-06 Score=77.69 Aligned_cols=127 Identities=8% Similarity=-0.112 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 012360 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN----------------EATFVSVLAACRHSGLITEGCQLFRRMGGV 347 (465)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (465)
..+..+...+.+.|++++|...|++..+. .|+ ...+..+..++.+.|++++|+..++++.+.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555666666666666666666554 222 366777777888888888888888888752
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 012360 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLG-KKVANNMMK 414 (465)
Q Consensus 348 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 414 (465)
.+.+...+..+..+|...|++++|...|+++.. .| +...+..+..++...|++++| ...+++|.+
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234667777788888888888888888877643 33 556777777778788888777 445666654
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=4.8e-07 Score=66.94 Aligned_cols=98 Identities=8% Similarity=-0.129 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHh
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACIT 398 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~ 398 (465)
+..+...+.+.|++++|+..|+++.+. .+.+...+..+..++...|++++|+..|++... .| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344556666777777777777777742 233566677777777777777777777776543 33 55667777788888
Q ss_pred cCChHHHHHHHHHHHHhCCCCc
Q 012360 399 YSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
.|++++|+..++++++.+|.+.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888777654
No 177
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.46 E-value=1.4e-07 Score=77.04 Aligned_cols=95 Identities=12% Similarity=-0.013 Sum_probs=74.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-c----------------cchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-K----------------FISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
.+..+...+...|++++|...|++... .| + ...|..+..++...|++++|+..++++++..|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344455555555666666655554321 11 1 26788899999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 418 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.++.++..++.+|...|++++|...+++..+..
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999887653
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.46 E-value=1.6e-07 Score=83.60 Aligned_cols=147 Identities=9% Similarity=-0.054 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHH
Q 012360 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363 (465)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (465)
..+..+...+.+.|++++|...|++..+. .|+... +...++.+++...+ . ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 34556666667777777777777776655 444331 12223333332211 1 1367778888
Q ss_pred HHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH-hhcCChHHHH
Q 012360 364 LSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY-ALEGHWTEVA 440 (465)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 440 (465)
|.+.|++++|...+++... . .+...|..+..+|...|++++|+..|++++++.|++..++..+.... ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877643 3 35677888888888888888888888888888888888787777773 3456677777
Q ss_pred HHHHHHHHhc
Q 012360 441 EARRNMKELQ 450 (465)
Q Consensus 441 ~~~~~~~~~~ 450 (465)
..+++|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888775543
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.45 E-value=4.4e-07 Score=71.22 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
.|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 344444444455555555555555555555554445555555555555555555444443
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.44 E-value=2.1e-07 Score=68.45 Aligned_cols=84 Identities=19% Similarity=0.073 Sum_probs=63.6
Q ss_pred hcCCHHHHHHHHHhCCCC----C-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHH
Q 012360 366 RAGLLYQAEEFIKIMPAE----D-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 440 (465)
..|++++|+..|++.... | +...+..++.++...|++++|+..++++++..|+++.++..++.++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357788888888776543 3 45667888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 012360 441 EARRNMKEL 449 (465)
Q Consensus 441 ~~~~~~~~~ 449 (465)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877654
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.44 E-value=1.2e-06 Score=68.29 Aligned_cols=130 Identities=12% Similarity=0.028 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccc
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFI 387 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~ 387 (465)
++..+...+...|++++|+..+++..+...-.++ ..++..+...+...|++++|.+.+++... .+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555556666666666666666665532100111 13556667777777777777777765432 11 134
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCC------CCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGN------QSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
++..+...+...|++++|.+.++++++..+ .....+..++..+...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 567778888888999999999988887532 12346788899999999999999999877654
No 182
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.44 E-value=8.6e-07 Score=76.65 Aligned_cols=112 Identities=6% Similarity=-0.153 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHH
Q 012360 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLS 394 (465)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~ 394 (465)
+...+..+...+...|++++|+..|+++... .+.+...+..+..+|.+.|++++|...+++... .| +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567778888999999999999999999853 234678888999999999999999999988655 33 6677888999
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
++...|++++|+..|+++++.+|+++..+...+...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 999999999999999999998887754444333333
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.43 E-value=1e-06 Score=79.28 Aligned_cols=89 Identities=4% Similarity=-0.099 Sum_probs=77.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
+...|..+..+|.+.|++++|.+.++++.. .| +...|..+..+|...|++++|+..|++++++.|++..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456788888999999999999999987654 33 6678889999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHH
Q 012360 431 ALEGHWTEVAE 441 (465)
Q Consensus 431 ~~~g~~~~a~~ 441 (465)
...++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988888765
No 184
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.42 E-value=5.3e-05 Score=66.04 Aligned_cols=217 Identities=9% Similarity=-0.046 Sum_probs=151.3
Q ss_pred chhh-HhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC----------HHHHHHHHhcCC---CCChhhHHHHHHHHHH
Q 012360 230 LSNL-QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS----------LEEALVTFYKTD---CKDVVTWTTMIEGLAN 295 (465)
Q Consensus 230 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~---~~~~~~~~~l~~~~~~ 295 (465)
.|.+ ++|...+..+...+ +-+..+++.--.++...+. +++++.+++.+. +.+..+|+.-.-.+..
T Consensus 42 ~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 3443 47888888888765 3334455543333333332 577888887765 3467788877777777
Q ss_pred cC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc-----
Q 012360 296 YG--LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL-ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA----- 367 (465)
Q Consensus 296 ~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 367 (465)
.+ .+++++.++.++.+.. +-|...|+.-..++...|. ++++++.++++.+. .+-|...|+.....+.+.
T Consensus 121 l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 121 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC-
T ss_pred cCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhccc
Confidence 77 4899999999999873 3366777777777777787 58999999999863 345677777766666655
Q ss_pred ---------CCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhc-----------CChHHHHHHHHHHHHhCCCCchhHHH
Q 012360 368 ---------GLLYQAEEFIKIMPA-ED-KFISYKALLSACITY-----------SEFDLGKKVANNMMKLGNQSHEAYVL 425 (465)
Q Consensus 368 ---------g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~ 425 (465)
+.++++.+.+..... .| |...|+-+-..+.+. +.++++++.++++++..|++...+..
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~ 277 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLT 277 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHH
Confidence 457788888877643 34 777787665555544 45789999999999999998665544
Q ss_pred HHHH---HhhcCChHHHHHHHHHHHHhc
Q 012360 426 LSNF---YALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 426 l~~~---~~~~g~~~~a~~~~~~~~~~~ 450 (465)
++.. ....|..+++...+.++.+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4432 224678888999999887643
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=4.9e-06 Score=76.96 Aligned_cols=163 Identities=4% Similarity=-0.143 Sum_probs=106.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhcCC---CCC-CChhh
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEA----TFVSVLAACRHSGLITEGCQLFRRMGGVY---RVQ-PTIEH 356 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~ 356 (465)
+..++..|...|++++|.+.+..+.+.- ..++.. ..+.+...+...|+++.|..+++...... +.. ....+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556777777777777777777654421 011111 22223334445677888888777764310 111 22456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC---CCC----ch
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA-------ED-KFISYKALLSACITYSEFDLGKKVANNMMKLG---NQS----HE 421 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 421 (465)
+..+...|...|++++|..+++.+.. ++ ...++..++..|...|++++|..+++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 67788888888888888888776522 11 23467788888888999999999998887743 322 23
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 422 AYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 422 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567778888888999998887776643
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.41 E-value=4.8e-07 Score=69.02 Aligned_cols=111 Identities=5% Similarity=-0.175 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------------HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE-------------ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 351 (465)
.+......+.+.|++++|+..|++..+. .|+. ..|..+..++.+.|++++|+..+++..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 4556677788999999999999999886 4441 1444444444444555555444444432
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ccchH----HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHH
Q 012360 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIM-PAED-KFISY----KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425 (465)
Q Consensus 352 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 425 (465)
+|++. ..+| +...| .....++...|++++|+..|++++++.|.+...+..
T Consensus 86 ------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 86 ------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp ------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred ------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 01111 1133 45567 888999999999999999999999999988874443
Q ss_pred H
Q 012360 426 L 426 (465)
Q Consensus 426 l 426 (465)
+
T Consensus 142 ~ 142 (159)
T 2hr2_A 142 K 142 (159)
T ss_dssp H
T ss_pred H
Confidence 3
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.30 E-value=3.7e-05 Score=73.19 Aligned_cols=168 Identities=9% Similarity=-0.052 Sum_probs=126.5
Q ss_pred HHHHHHHHhcCCC---CChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 012360 268 LEEALVTFYKTDC---KDVVTWTTMIEGLANYGL----------GNEALRVFYQMERKGIKPNEATFVSVLAACRHSG-- 332 (465)
Q Consensus 268 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~-- 332 (465)
.++|++.++++.. .+..+|+.-...+...++ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 3455666665542 244456655555555555 788999999888763 225667777777778888
Q ss_pred CHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhc----------
Q 012360 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG-LLYQAEEFIKIMPA-ED-KFISYKALLSACITY---------- 399 (465)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~---------- 399 (465)
+++++++.++++.+. .+-+...|+.-...+.+.| .++++.+.++++.. .| +...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 669999999999863 3456777877777788888 88899998888765 33 667787777776653
Q ss_pred ----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHH
Q 012360 400 ----SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438 (465)
Q Consensus 400 ----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 438 (465)
+.++++++.+++++..+|.+..+|..+...+.+.+++++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988665
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.30 E-value=3.4e-06 Score=59.84 Aligned_cols=64 Identities=9% Similarity=0.058 Sum_probs=49.2
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
+...+..+...+...|++++|+..|+++++.+|+++.+|..++.+|...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5556777777777788888888888888888887777788888888888888888877776654
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.30 E-value=2.2e-06 Score=76.20 Aligned_cols=153 Identities=10% Similarity=-0.034 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 331 (465)
...+..+...+.+.|++++|...|++....+.... .+...++.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44577788888999999999999987553221111 1122233333332221 13677888899999
Q ss_pred CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHH-HhcCChHHHHHH
Q 012360 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSAC-ITYSEFDLGKKV 408 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~-~~~~~~~~a~~~ 408 (465)
|++++|+..++++.+. .+.+...+..+..+|...|++++|...|++... .| +...+..+.... ...+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999853 244678889999999999999999999998865 34 555566665553 345678888999
Q ss_pred HHHHHHhCCCCch
Q 012360 409 ANNMMKLGNQSHE 421 (465)
Q Consensus 409 ~~~~~~~~p~~~~ 421 (465)
|+++.+..|.++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999998887653
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.29 E-value=3.2e-06 Score=78.44 Aligned_cols=125 Identities=11% Similarity=0.026 Sum_probs=97.3
Q ss_pred HHHhcCCHHHHHHHHHHhhcCC--CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCc-cchHH
Q 012360 327 ACRHSGLITEGCQLFRRMGGVY--RVQP----TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA---------EDK-FISYK 390 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~~~ 390 (465)
.+...|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|..++++... .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999998888775321 1122 356788899999999999999998876532 232 34689
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH-----hCCCCch---hHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 391 ALLSACITYSEFDLGKKVANNMMK-----LGNQSHE---AYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
.|...|...|++++|+.+++++++ +||+++. ....+..++...|++++|...++++++...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987 6788766 356788888899999999999999987543
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.29 E-value=2e-07 Score=67.72 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=73.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC------chhHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS------HEAYV 424 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 424 (465)
+...+..+...+...|++++|.+.|++... +.+...|..+..++...|++++|++.++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 345667777788888888888888877543 3356778888889999999999999999999999988 66788
Q ss_pred HHHHHHhhcCChHHHHHHHHH
Q 012360 425 LLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 425 ~l~~~~~~~g~~~~a~~~~~~ 445 (465)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888887777665543
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.29 E-value=3.8e-06 Score=65.47 Aligned_cols=132 Identities=10% Similarity=-0.020 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC----Chh
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGI-KPN----EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP----TIE 355 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~ 355 (465)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555666666666766666666543210 011 13566677777778888888888777653211111 144
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.+..+...+...|++++|.+.+++... .+ ...++..+...+...|++++|.+.++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 566777778888888888887776532 11 23457778888889999999999999988754
No 193
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.24 E-value=4e-06 Score=78.29 Aligned_cols=115 Identities=9% Similarity=-0.048 Sum_probs=63.9
Q ss_pred HHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 012360 260 DMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLIT 335 (465)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~ 335 (465)
..+.+.|++++|.+.|++.. +.+...|..+..+|.+.|++++|...+++..+. .| +...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 34455666666666666543 234556666666666666666666666666665 33 3455666666666666666
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 012360 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDL--LSRAGLLYQAEEFIK 378 (465)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 378 (465)
+|++.++++.+. .+.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666542 11223344444444 556666666666665
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=7.9e-05 Score=68.74 Aligned_cols=93 Identities=4% Similarity=-0.112 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhc--------C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CC-CC-C--H
Q 012360 153 SLNILINGYIDMELVDLAREVFDEIVD--------K-DIVLWRSMMHGCVKAKQPEEALELFKKMIDE--GV-TP-D--E 217 (465)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~-~--~ 217 (465)
++..+...+...|++++|..+++.... + ...++..++..|...|++++|...+++.... .+ .| . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 344455555555555555555554411 0 2345666667777777777777777665531 11 11 1 1
Q ss_pred HHHHHHHHHhccchhhHhHHHHHHHHHH
Q 012360 218 EVMVSVLSACSSLSNLQYGRLVHRFILQ 245 (465)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (465)
..+..+...+...++++.|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2344444556666777777666655543
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.20 E-value=5.3e-06 Score=57.45 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
...+..+...+...|++++|...+++... +.+...+..+..++...|++++|+..++++++..|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44566666777777777777777766533 2355667778888888888899999999988888888888888888876
Q ss_pred hcC
Q 012360 432 LEG 434 (465)
Q Consensus 432 ~~g 434 (465)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.18 E-value=4.7e-06 Score=60.89 Aligned_cols=80 Identities=6% Similarity=-0.079 Sum_probs=48.2
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHH
Q 012360 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMM 413 (465)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (465)
.|+..|+++.+. .+.+...+..+...|...|++++|...+++... . .+...|..+..++...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666666542 233455666666666666666666666665433 2 244556666666666666666666666666
Q ss_pred HhCC
Q 012360 414 KLGN 417 (465)
Q Consensus 414 ~~~p 417 (465)
+..|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 6654
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.11 E-value=9.2e-06 Score=73.03 Aligned_cols=114 Identities=4% Similarity=-0.039 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHh
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT 398 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (465)
..+..+...+.+.|++++|+..|+++.+. .+... .....+++.+ ....+..+|..+..++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~~~-----~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADGAK-----LQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHHGG-----GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHHHH-----HHHHHHHHHHHHHHHHHh
Confidence 45666667777777777777777777631 11100 0001111100 001245678899999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 399 YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.|++++|+..++++++..|+++.++..++.+|...|++++|...+++..+..
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999887653
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.11 E-value=1.2e-05 Score=74.72 Aligned_cols=116 Identities=7% Similarity=0.016 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-c---------------cchHHHHHH
Q 012360 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-K---------------FISYKALLS 394 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~---------------~~~~~~l~~ 394 (465)
+++++|...|+..... .+.....+..+...+.+.|++++|...|++... .| + ...|..+..
T Consensus 248 ~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 4455555555443321 112355778889999999999999999998754 23 2 478889999
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...|++..+.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988765
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.11 E-value=2.2e-06 Score=65.27 Aligned_cols=48 Identities=8% Similarity=0.047 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC-----------ChHHHHHHHHHHHHh
Q 012360 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG-----------HWTEVAEARRNMKEL 449 (465)
Q Consensus 402 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~ 449 (465)
+++|+..|+++++++|+...+|+.++.+|...| ++++|...|++..+.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 568888888888888888888888888888764 788888888877655
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.05 E-value=3.7e-05 Score=58.13 Aligned_cols=110 Identities=9% Similarity=-0.056 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh----cCCHHHH
Q 012360 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR----AGLLYQA 373 (465)
Q Consensus 298 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 373 (465)
++++|..+|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4555666666655554 22222 444454555555566666655542 234444455555554 4555555
Q ss_pred HHHHHhCCCCCccchHHHHHHHHHh----cCChHHHHHHHHHHHHhC
Q 012360 374 EEFIKIMPAEDKFISYKALLSACIT----YSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 416 (465)
.++|++.....++..+..|...|.. .+++++|++.|+++.+.+
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555554444444455555555554 455555555555555543
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.04 E-value=3e-05 Score=53.70 Aligned_cols=72 Identities=10% Similarity=0.001 Sum_probs=59.2
Q ss_pred CccchHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCC
Q 012360 384 DKFISYKALLSACITYSE---FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPG 456 (465)
Q Consensus 384 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 456 (465)
+++..+..+..++...++ .++|..+++++++.+|+++.....++..+.+.|++++|...|+++.+.... +|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 356677777777765444 789999999999999999999999999999999999999999998876554 443
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.95 E-value=8.2e-05 Score=56.19 Aligned_cols=113 Identities=5% Similarity=-0.077 Sum_probs=93.0
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHh----cCChHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT----YSEFDLGK 406 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 406 (465)
.+++++|+.+|++..+. + .|... |...|...+.+++|.++|++.....++..+..|...|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 35788999999998864 4 33333 777788888899999999988777888888999998887 78999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHHhcC
Q 012360 407 KVANNMMKLGNQSHEAYVLLSNFYAL----EGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 451 (465)
+.|+++.+.+ ++..+..|+..|.. .+++++|..++++..+.|.
T Consensus 82 ~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999998874 56678899999998 8999999999998877654
No 203
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.95 E-value=3.8e-07 Score=81.06 Aligned_cols=261 Identities=13% Similarity=0.053 Sum_probs=144.9
Q ss_pred cchhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc
Q 012360 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96 (465)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 96 (465)
.+.+|+.|..+..+.+++.+|++.|=+ ..|...|..++.+..+.|++++-+..+...++..- ++..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 455667777777777766666654432 34556666777777777777777776665554422 22333456666776
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 176 (465)
.+++.+..+++. .|+..-...+.+-|...|.++.|.-+|..+. -|.-|...+.+.|++..|.+.-++
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is------N~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC------CCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666665544432 3444444556666666666666666665551 112222223333443333222111
Q ss_pred hhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHH
Q 012360 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256 (465)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (465)
..++.||-.+-.+|...+.+.-|.-.--.+.- .|| ....++..|-..|.+++-+.+++.-.... .....+|+
T Consensus 196 --Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFT 267 (624)
T 3lvg_A 196 --ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 267 (624)
T ss_dssp --CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHH
T ss_pred --cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHH
Confidence 12556777777777777777665443333221 111 12234555677777777777777665432 34566777
Q ss_pred HHHHHHHhcCCHHHHHHHHhc----CCCC-------ChhhHHHHHHHHHHcCChHHHH
Q 012360 257 ALIDMYSKCGSLEEALVTFYK----TDCK-------DVVTWTTMIEGLANYGLGNEAL 303 (465)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~----~~~~-------~~~~~~~l~~~~~~~~~~~~a~ 303 (465)
.|.-.|++- ++++..+.++- +.-| ....|..++-.|.+..+++.|.
T Consensus 268 ELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 268 ELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 777666654 44444444432 2212 4456777777787777777664
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=3.1e-05 Score=55.79 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=60.3
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+...|..+...+...|++++|++.++++++..|.++..+..++.++.+.|++++|...+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 345678888999999999999999999999999999999999999999999999999999887543
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.92 E-value=2.3e-05 Score=57.06 Aligned_cols=64 Identities=11% Similarity=0.050 Sum_probs=41.1
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
+...+..+...+...|++++|+..++++++..|.++..+..++.++...|++++|...+++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666666666666666666666666665543
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.87 E-value=6.7e-05 Score=51.65 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=60.5
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+...+..+...+...|++++|+..++++++..|.++..+..++.++...|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 455778888999999999999999999999999999999999999999999999999999887653
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.86 E-value=1.8e-05 Score=60.25 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=33.4
Q ss_pred HHHHHHHhCCC-CC-ccchHHHHHHHHHhc-----------CChHHHHHHHHHHHHhCCCCch
Q 012360 372 QAEEFIKIMPA-ED-KFISYKALLSACITY-----------SEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 372 ~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+|+..|++... +| +...|..+..+|... |++++|++.|+++++++|++..
T Consensus 64 eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 55555544432 22 344455555555544 5899999999999999999865
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.84 E-value=0.00025 Score=67.43 Aligned_cols=149 Identities=11% Similarity=0.002 Sum_probs=120.7
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 297 GLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGL----------ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
...++|++.++++.+. .|+ ...|+.--.++...|+ +++++..++++.+. .+.+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3456789999999987 554 4566665566666666 89999999999963 3557778888788888
Q ss_pred hcC--CHHHHHHHHHhCCC--CCccchHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhc-------
Q 012360 366 RAG--LLYQAEEFIKIMPA--EDKFISYKALLSACITYS-EFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE------- 433 (465)
Q Consensus 366 ~~g--~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 433 (465)
+.| +++++.+.++++.. ..+..+|+.-...+.+.| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 67999999998865 347788888888888888 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHHHHh
Q 012360 434 -------GHWTEVAEARRNMKEL 449 (465)
Q Consensus 434 -------g~~~~a~~~~~~~~~~ 449 (465)
+.++++.+++++....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhh
Confidence 5578888888877654
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.77 E-value=3.5e-05 Score=54.30 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=58.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-ccc-hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCh
Q 012360 360 LVDLLSRAGLLYQAEEFIKIMPA-ED-KFI-SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436 (465)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 436 (465)
....+.+.|++++|.+.++++.. .| +.. .+..+..++...|++++|++.|+++++.+|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 45567778888888888877643 33 456 77888888888999999999999999999888876532 455
Q ss_pred HHHHHHHHHHH
Q 012360 437 TEVAEARRNMK 447 (465)
Q Consensus 437 ~~a~~~~~~~~ 447 (465)
.++...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 55666665443
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.69 E-value=0.00022 Score=66.22 Aligned_cols=118 Identities=12% Similarity=0.014 Sum_probs=71.7
Q ss_pred HHHhCCChHHHHHHHHhh---------CCCCC-chhHHHHHHHHHhcCChHHHHHHHHHhhc----------C-ChHHHH
Q 012360 128 MYAKCKEMDEALRLFDEM---------GSRRN-IVSLNILINGYIDMELVDLAREVFDEIVD----------K-DIVLWR 186 (465)
Q Consensus 128 ~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~ 186 (465)
.+...|++++|+.++++. ...|+ ..+++.|...|...|++++|+.++++... | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888777665 11222 23567777777777777777777766522 1 234577
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH-----cCCC-CC-HHHHHHHHHHhccchhhHhHHHHHHHHHH
Q 012360 187 SMMHGCVKAKQPEEALELFKKMID-----EGVT-PD-EEVMVSVLSACSSLSNLQYGRLVHRFILQ 245 (465)
Q Consensus 187 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (465)
.|...|...|++++|..++++.++ .|.. |+ ..+...+-.++...+.+++|...+..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776653 1221 11 12333444455566666777766666654
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.65 E-value=0.00022 Score=49.98 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=55.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCch-hHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHE-AYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
..+..+...|++++|+..++++++..|.++. .+..++.++...|++++|...+++..+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3566778899999999999999999999999 999999999999999999999998876643
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.62 E-value=0.00015 Score=51.13 Aligned_cols=65 Identities=9% Similarity=-0.055 Sum_probs=44.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
+...+..+..+|...|++++|.+.|++... . .+...|..+..+|...|++++|++.+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 455666677777777777777777766543 2 2556677777777777777777777777777654
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.61 E-value=0.0002 Score=65.38 Aligned_cols=82 Identities=10% Similarity=0.075 Sum_probs=61.6
Q ss_pred cCCHHHHHHHHHhCCC---------CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHH-----hCCCCch---hHHHHHH
Q 012360 367 AGLLYQAEEFIKIMPA---------ED-KFISYKALLSACITYSEFDLGKKVANNMMK-----LGNQSHE---AYVLLSN 428 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~---------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~ 428 (465)
.|++++|..++++... .| -..+++.++.+|...|++++|+.+++++++ .||+++. .++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566777776654321 22 224688888899999999999999999887 4566555 6888999
Q ss_pred HHhhcCChHHHHHHHHHHHH
Q 012360 429 FYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 429 ~~~~~g~~~~a~~~~~~~~~ 448 (465)
.|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999987754
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.55 E-value=0.00037 Score=63.69 Aligned_cols=88 Identities=10% Similarity=0.121 Sum_probs=61.1
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC------CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHH-----hCCCCch---h
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA------ED----KFISYKALLSACITYSEFDLGKKVANNMMK-----LGNQSHE---A 422 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~------~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~ 422 (465)
+..+.+.|++++|..++++... .+ -..+++.++..|...|++++|+.+++++++ .+|+++. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445566777777777665422 11 124577788888888888888888888876 4455544 5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 423 YVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 423 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
++.|+..|..+|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77888888888888888888887653
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.55 E-value=0.0023 Score=56.04 Aligned_cols=139 Identities=8% Similarity=-0.079 Sum_probs=77.1
Q ss_pred CChhhHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---cC-----CHHHHHHHHHHhhc
Q 012360 281 KDVVTWTTMIEGLA--NYG---LGNEALRVFYQMERKGIKPN-EATFVSVLAACRH---SG-----LITEGCQLFRRMGG 346 (465)
Q Consensus 281 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~---~~-----~~~~a~~~~~~~~~ 346 (465)
.+...|...+.+.. ..+ ...+|..+|++..+. .|+ ...+..+..+|.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 45666666665533 222 346788888888877 665 3444444444321 00 01111112222111
Q ss_pred CCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 347 VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 347 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
....+.+..++..+...+...|++++|...++++.. +|+...|..+...+.-.|++++|.+.++++..++|..++
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 112244566666666556666777777777766543 455555556666666777777777777777777776653
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.33 E-value=0.00093 Score=60.94 Aligned_cols=93 Identities=8% Similarity=-0.059 Sum_probs=71.3
Q ss_pred hcCCHHHHHHHHHHhhcCC--CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCc-cchHHHHH
Q 012360 330 HSGLITEGCQLFRRMGGVY--RVQP----TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA---------EDK-FISYKALL 393 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~~~~l~ 393 (465)
..|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|+.++++... .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578888888888765321 1222 256788899999999999999998887532 332 34589999
Q ss_pred HHHHhcCChHHHHHHHHHHHH-----hCCCCchh
Q 012360 394 SACITYSEFDLGKKVANNMMK-----LGNQSHEA 422 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 422 (465)
..|...|++++|+.+++++++ +||+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999987 67888763
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.33 E-value=0.0016 Score=59.41 Aligned_cols=99 Identities=10% Similarity=0.008 Sum_probs=76.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCC--CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCc-cch
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVY--RVQP----TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA---------EDK-FIS 388 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~ 388 (465)
+..+...|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|+.+++++.. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667889999999999886431 1222 256788899999999999999999886532 232 345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-----hCCCCchhH
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMK-----LGNQSHEAY 423 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 423 (465)
++.|...|...|++++|+.+++++++ +||+++.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 88999999999999999999999987 678888743
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.18 E-value=0.0017 Score=45.99 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA---------EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 424 (465)
..-+..|...+.+.|+++.|...++.... .+....+..+..++.+.|+++.|+..++++.+..|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 33444555666666666666666554321 124566888999999999999999999999999999987654
Q ss_pred HH
Q 012360 425 LL 426 (465)
Q Consensus 425 ~l 426 (465)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.14 E-value=0.0017 Score=54.51 Aligned_cols=87 Identities=7% Similarity=0.037 Sum_probs=57.9
Q ss_pred HHHHHHHHhCCC-CC---ccchHHHHHHHHHh-----cCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHhhc-CChHHH
Q 012360 371 YQAEEFIKIMPA-ED---KFISYKALLSACIT-----YSEFDLGKKVANNMMKLGNQS-HEAYVLLSNFYALE-GHWTEV 439 (465)
Q Consensus 371 ~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a 439 (465)
..|...+++..+ .| +...|..++..|.. -|+.++|.++|+++++++|+. ..++..++..+++. |++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 344444444432 33 24456666666666 378888888888888888764 77777888877774 778888
Q ss_pred HHHHHHHHHhcCCCCCCC
Q 012360 440 AEARRNMKELQTRKKPGN 457 (465)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~ 457 (465)
.+++++.........|+.
T Consensus 260 ~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 260 DEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHcCCCCCCCCh
Confidence 888887777666654553
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.10 E-value=0.0023 Score=44.04 Aligned_cols=71 Identities=6% Similarity=-0.049 Sum_probs=52.2
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 351 QPTIEHFVCLVDLLSRAGL---LYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 351 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+.+...+..+..++...++ .++|..++++... . .++..+..++..+...|++++|+..|+++.+..|+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4566677777777765444 6788888877644 3 36677777888888889999999999998888877443
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.09 E-value=0.013 Score=51.44 Aligned_cols=72 Identities=8% Similarity=0.042 Sum_probs=50.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhH
Q 012360 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357 (465)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (465)
.++..|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.++++. .+.|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---rL~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF---NLRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCcChH
Confidence 456667666666666678888888888777763 666666666677777788888888887777 335665554
No 222
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.08 E-value=0.17 Score=48.23 Aligned_cols=114 Identities=10% Similarity=-0.029 Sum_probs=72.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH
Q 012360 297 GLGNEALRVFYQMERKGIKPNEATF----VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372 (465)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 372 (465)
.+.+.|...+....+.+ ..+.... ..+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 47899999998886543 2233322 23333334445356677777765532 2444344445555567899999
Q ss_pred HHHHHHhCCCCC-ccch-HHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 373 AEEFIKIMPAED-KFIS-YKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 373 A~~~~~~~~~~~-~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
|...|+.|...+ +..- .-=+.+++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999997643 2221 12244566788999999999999875
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.96 E-value=0.0014 Score=49.21 Aligned_cols=88 Identities=8% Similarity=-0.027 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHhCCC-C-C--ccchHHHHHHHHHhcCChHH
Q 012360 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG---LLYQAEEFIKIMPA-E-D--KFISYKALLSACITYSEFDL 404 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~-~--~~~~~~~l~~~~~~~~~~~~ 404 (465)
+....+.+.|.+..+. + +++..+...+..++++.+ +.+++..+++.+.. . | +...+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3456677777776653 3 478888888888999988 56688888887654 2 3 35566777788899999999
Q ss_pred HHHHHHHHHHhCCCCch
Q 012360 405 GKKVANNMMKLGNQSHE 421 (465)
Q Consensus 405 a~~~~~~~~~~~p~~~~ 421 (465)
|.+.++.+++..|++..
T Consensus 90 A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCCCCHH
Confidence 99999999999998865
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.86 E-value=0.17 Score=50.70 Aligned_cols=127 Identities=15% Similarity=0.157 Sum_probs=76.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHH
Q 012360 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202 (465)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 202 (465)
..++..+.+.|..+.|.++.+.- ..-.......|++++|.++.+.+ .+...|..+...+.+.|+++.|.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~---------~~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~ 701 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ---------DQKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAI 701 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH---------HHHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc---------chheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHH
Confidence 55666667777777777664321 11133456678888887776555 34567888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 012360 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275 (465)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (465)
+.|..+.+ |..+...+...++.+....+.+.....|. ++....+|.+.|++++|.+++
T Consensus 702 ~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 702 EAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 88887643 33344444445565555555444444331 222334455566666665544
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.70 E-value=0.073 Score=53.28 Aligned_cols=99 Identities=10% Similarity=-0.025 Sum_probs=49.9
Q ss_pred HHHccCChHHHHH-HhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhH
Q 012360 27 FYGRMALFTDARV-LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT 105 (465)
Q Consensus 27 ~~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 105 (465)
.....+++++|.+ ++..++.+ .....++..+.+.|.++.|+++.+.-. .-+......|+++.|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHH
Confidence 3344666777766 55443301 122555566666666666665542110 00122334556665555
Q ss_pred HHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh
Q 012360 106 VHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145 (465)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 145 (465)
+.+.+ .+...|..+...+.+.|+++.|.+.|.++
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 53321 23445566666666666666666665555
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.67 E-value=0.0072 Score=45.40 Aligned_cols=78 Identities=13% Similarity=0.016 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhcCCCCCC--ChhhHHHHHHHHHhcCCHHHHHH
Q 012360 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSG---LITEGCQLFRRMGGVYRVQP--TIEHFVCLVDLLSRAGLLYQAEE 375 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 375 (465)
.+.+.|.+..+.| .++..+...+..++++.+ +.++++.+++...+. . .| ....+..|.-++.+.|++++|.+
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444433 244444445555555554 344555555555542 1 12 23344444555555555555555
Q ss_pred HHHhCC
Q 012360 376 FIKIMP 381 (465)
Q Consensus 376 ~~~~~~ 381 (465)
.++.+.
T Consensus 93 y~~~lL 98 (152)
T 1pc2_A 93 YVRGLL 98 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.035 Score=42.86 Aligned_cols=105 Identities=12% Similarity=0.031 Sum_probs=69.8
Q ss_pred HHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhh
Q 012360 25 IHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104 (465)
Q Consensus 25 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 104 (465)
.......|+++.|.++.+.+ .+...|..|.....++|+++-|.+.|.+... +..+.-.|...|+.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 45566788888888887766 4566888888888888888888888887543 334444455566666555
Q ss_pred HHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhC
Q 012360 105 TVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146 (465)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 146 (465)
++-+.....| -++.....+.-.|+++++.++|.+.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5544444433 13444555566677777777776653
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.61 E-value=0.0092 Score=42.06 Aligned_cols=62 Identities=11% Similarity=0.015 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhC-------CCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLG-------NQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
-...++..+...|+++.|+..|+++++.. +..+.++..|+.++.+.|++++|..++++..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 35578888999999999999999999853 344567999999999999999999999988764
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.57 E-value=0.42 Score=47.51 Aligned_cols=25 Identities=8% Similarity=-0.003 Sum_probs=13.6
Q ss_pred HHHHHHHhcchhhhhhhhHHHHHHH
Q 012360 87 LVILFSACARLEKLHYGKTVHCYAT 111 (465)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (465)
|..++++..+.++.+.+.++|..+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555555555555555554
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.31 Score=37.60 Aligned_cols=100 Identities=8% Similarity=0.062 Sum_probs=54.2
Q ss_pred HHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHH
Q 012360 161 YIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240 (465)
Q Consensus 161 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (465)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|...|....+ +..+.-.|...|+.++-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34556666666655544 3556677777777777777777777766542 333333444455555544444
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 012360 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277 (465)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 277 (465)
+.....| -++....++...|+++++.++|.+
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444333 122333444445666666555543
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.13 E-value=0.00084 Score=60.24 Aligned_cols=234 Identities=12% Similarity=0.042 Sum_probs=155.8
Q ss_pred CcchhhhHHHHHHHccCChHHHHHHhccCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 012360 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSA 93 (465)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 93 (465)
-|+..|..++....+.|.+++-+..+.-.++ ++...=+.|+-+|++.++..+-.+++. .|+..-...+.+-
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDr 153 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDR 153 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHH
Confidence 4788999999999999999999999887763 356667899999999999876554442 4777777888888
Q ss_pred hcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHH
Q 012360 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173 (465)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 173 (465)
|...|.++.|.-+|..+ .-|..|..++.+.|++..|.+.-++ ..++.||-.+..+|...+.+.-|.-.
T Consensus 154 cf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~AVdaArK---Ans~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 154 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK---ANSTRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp HHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGSSTTTTTT---CCSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred HHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHHHHHHHh---cCChhHHHHHHHHHhCchHHHHHHHh
Confidence 88889988888776543 2344566666777887777666544 34677888888888888877766543
Q ss_pred HHHh-hcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc-CCCC-
Q 012360 174 FDEI-VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQ- 250 (465)
Q Consensus 174 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~- 250 (465)
--.+ +.++ -...++..|-..|.+++-+.+++..... -+.....|+-|.-.|++- ++++..+.++....+ +++-
T Consensus 222 GLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKv 297 (624)
T 3lvg_A 222 GLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKV 297 (624)
T ss_dssp HHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTT
T ss_pred cchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHH
Confidence 2222 2221 1223455677788888888887776632 234566677666666554 334444333332221 2211
Q ss_pred -----ChhHHHHHHHHHHhcCCHHHHH
Q 012360 251 -----DAFVKTALIDMYSKCGSLEEAL 272 (465)
Q Consensus 251 -----~~~~~~~l~~~~~~~~~~~~a~ 272 (465)
....|..++-.|..-.+++.|.
T Consensus 298 iracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 298 LRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 2345667777777777777664
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.01 E-value=0.27 Score=35.63 Aligned_cols=141 Identities=11% Similarity=0.069 Sum_probs=96.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH
Q 012360 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 372 (465)
+.-.|..++..++..+.... .+..-|+.+|--....-+-+-..+.++.+-+-+.+.+ +|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHH
Confidence 34467788888888877654 2556677777666666677777777777765433322 333333
Q ss_pred HHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC
Q 012360 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 373 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
....+-.+. .+....+..+..+...|+-|.-.+++.......|.++.....++.+|.+.|+..+|.+++++.=+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 333333332 234456667777788888888888888877777778888889999999999999999999888777763
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.92 E-value=0.53 Score=39.65 Aligned_cols=90 Identities=14% Similarity=0.061 Sum_probs=60.5
Q ss_pred hHHHHHHHHHhhc--CC---hHHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc-chhhHh
Q 012360 167 VDLAREVFDEIVD--KD---IVLWRSMMHGCVKA-----KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS-LSNLQY 235 (465)
Q Consensus 167 ~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~ 235 (465)
...|...+++..+ |+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++. .|+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 4556666666633 33 45778888888874 8888888888888885332235666666777776 488888
Q ss_pred HHHHHHHHHHcCCC--CChhHHH
Q 012360 236 GRLVHRFILQNNIT--QDAFVKT 256 (465)
Q Consensus 236 a~~~~~~~~~~~~~--~~~~~~~ 256 (465)
+...+++....... |+....+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 88888888886655 5544333
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.81 E-value=0.074 Score=39.42 Aligned_cols=111 Identities=9% Similarity=0.056 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHhhcCCCCCCChh-hHHHHHH------HHHhcCCHHHHHHHHHhCCC-
Q 012360 317 NEATFVSVLAACRHSGLI------TEGCQLFRRMGGVYRVQPTIE-HFVCLVD------LLSRAGLLYQAEEFIKIMPA- 382 (465)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~- 382 (465)
|..++-..+....+.|++ ++.+++|+++.. .++|+.. .+...+. .+...++.++|.++|+.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344555555555555665 666667776664 4555421 1111111 12334677777777776632
Q ss_pred -CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 383 -EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 383 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
+.=...|-.....-.+.|+.+.|.+++.+++..+|.+...+...+.-
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 11244566666666788888888888888888888877655544443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.74 E-value=0.1 Score=37.65 Aligned_cols=87 Identities=8% Similarity=-0.031 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHhCCCC--C--ccchHHHHHHHHHhcCChHHH
Q 012360 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ---AEEFIKIMPAE--D--KFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a 405 (465)
....+.+.|.+.... + .++..+-..+..++.+..+... ++.+++.+... | .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344444555544432 2 2666666666677777666555 66666665543 2 233455566778889999999
Q ss_pred HHHHHHHHHhCCCCch
Q 012360 406 KKVANNMMKLGNQSHE 421 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~ 421 (465)
.+.++.+++..|.+..
T Consensus 94 ~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhCCCCHH
Confidence 9999999999998866
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.73 E-value=0.057 Score=40.02 Aligned_cols=102 Identities=8% Similarity=-0.027 Sum_probs=72.5
Q ss_pred CCChhhHHHHHHHHHhcCCH------HHHHHHHHhCCC--CCc-cchHHHHHH------HHHhcCChHHHHHHHHHHHHh
Q 012360 351 QPTIEHFVCLVDLLSRAGLL------YQAEEFIKIMPA--EDK-FISYKALLS------ACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 351 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~--~~~-~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~ 415 (465)
+.|.++|-..+....+.|++ ++.+++|++... +|+ ...|...+. .+...+|.++|.++|+.+++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34667777777777777887 777777776533 232 112222111 123458999999999999987
Q ss_pred CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC
Q 012360 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 416 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
...-+.+|...+..-.++|+...|++++.+....+.+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 6555778888999999999999999999987765543
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.44 E-value=0.029 Score=40.46 Aligned_cols=84 Identities=10% Similarity=-0.020 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHH---HHHHHHHHHHhC-C-CCchhHHHHHHHHhhcCChHHH
Q 012360 367 AGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDL---GKKVANNMMKLG-N-QSHEAYVLLSNFYALEGHWTEV 439 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a 439 (465)
......+.+.+.+... .++..+-..+.+++.+..+... ++.+++...+.+ | ......+.|+.++.+.|+|++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3344455555544322 4566777778889988887666 899999988877 5 4566789999999999999999
Q ss_pred HHHHHHHHHhc
Q 012360 440 AEARRNMKELQ 450 (465)
Q Consensus 440 ~~~~~~~~~~~ 450 (465)
+++++.+.+..
T Consensus 94 ~~~~~~lL~~e 104 (126)
T 1nzn_A 94 LKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999887653
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.09 Score=51.11 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=51.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
...+...|+++.|+++.++++...|.+..+|..|+.+|...|+|+.|+-.++-+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4556788999999999999999999999999999999999999999999999874
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.30 E-value=0.057 Score=48.56 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH-----HhcCCCCCC
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK-----ELQTRKKPG 456 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ 456 (465)
...++..+...|++++++..+..++...|-+...+..++.++.+.|+..+|++.|+++. +.|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44566777889999999999999999999999899999999999999999999988765 468877664
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.16 E-value=1.9 Score=39.46 Aligned_cols=246 Identities=10% Similarity=0.031 Sum_probs=137.4
Q ss_pred CChHHHHHHhccCC-----CC----CcccHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCchhhHHHHHHHhcc----h
Q 012360 32 ALFTDARVLFDKMP-----FR----DVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-GIVADKITLVILFSACAR----L 97 (465)
Q Consensus 32 ~~~~~A~~~~~~~~-----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~----~ 97 (465)
|+++.|++.+-.+. .. .......++..|...|+++...+.+..+... |..+.. ...+++.+.. .
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 66777877664432 11 2334667888899999999988887766543 322222 2334433321 1
Q ss_pred hhhhhhhHHHHHHHHh------C-Ccc---chhhHHHHHHHHHhCCChHHHHHHHHhh-----CCCCC---chhHHHHHH
Q 012360 98 EKLHYGKTVHCYATKV------G-LEY---MLNMENALLLMYAKCKEMDEALRLFDEM-----GSRRN---IVSLNILIN 159 (465)
Q Consensus 98 ~~~~~a~~~~~~~~~~------~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~---~~~~~~l~~ 159 (465)
...+. +........ | +-. .......|...+...|++.+|..++..+ +..+. ...+..-++
T Consensus 108 ~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 11111 111111111 1 111 1233456788899999999999999988 22221 235666778
Q ss_pred HHHhcCChHHHHHHHHHhhc------CC----hHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCHHHHHHH----H
Q 012360 160 GYIDMELVDLAREVFDEIVD------KD----IVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSV----L 224 (465)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~------~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l----l 224 (465)
.|...+++..|..+++++.. ++ ...+...+..+...+++.+|...|.+..+. ....|...+..+ +
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v 265 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIV 265 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 88999999999988887622 11 234666777788889999988888777542 111122222111 1
Q ss_pred HHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--CCHHHHHHHHhcCCCC
Q 012360 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC--GSLEEALVTFYKTDCK 281 (465)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~ 281 (465)
....-.+..+.-..++........-++...+..++.+|... .+++...+.|.....+
T Consensus 266 ~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 266 YFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 11111111111222222222222234566778888888764 4677888888765544
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=95.05 E-value=1.5 Score=37.82 Aligned_cols=167 Identities=11% Similarity=0.065 Sum_probs=85.4
Q ss_pred hhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCchhhHHHHHHHhc
Q 012360 20 VGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILF----KQLIFEGIVADKITLVILFSACA 95 (465)
Q Consensus 20 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~l~~~~~ 95 (465)
+|.++..-|.+.+++++|++++-. -...+.+.|+...|-++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344444445555555555544322 233455666666555444 44455677777777777777665
Q ss_pred chhhhh-----hhhHHHHHHHHhC--CccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChH
Q 012360 96 RLEKLH-----YGKTVHCYATKVG--LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168 (465)
Q Consensus 96 ~~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 168 (465)
....-+ -..+.+.+..+.| ..-+......+...|.+.+++.+|...|= .+..++...+..++.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence 543211 1222223333333 22345566677777777888888777763 343444456655554444433311
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012360 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209 (465)
Q Consensus 169 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 209 (465)
++ +...-. .+--|...++...|..+++...
T Consensus 185 e~----------dlfiaR-aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 185 TA----------PLYCAR-AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp GH----------HHHHHH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred cH----------HHHHHH-HHHHHHHhCCHHHHHHHHHHHH
Confidence 11 111112 2233555667777766665544
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.89 E-value=0.74 Score=33.45 Aligned_cols=139 Identities=9% Similarity=-0.019 Sum_probs=90.3
Q ss_pred chhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 012360 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175 (465)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 175 (465)
..|..++..++..+..+.. +..-+|.+|.-....-+=+-..++++.+|.--|.. .+|++......+-
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis----------~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD----------KCQNLKSVVECGV 85 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------GCSCTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH----------hhhcHHHHHHHHH
Confidence 3466777777777666542 34445555555555566666677777764333332 2344444444443
Q ss_pred HhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC
Q 012360 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249 (465)
Q Consensus 176 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 249 (465)
.+.. +....+..++.....|+-++-.+++..+.. +.+|+......+..+|.+.|+..++.+++.+.-+.|++
T Consensus 86 ~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 86 INNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred Hhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3322 334456667788888888888888888654 35677888888888899999999999999888888754
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.18 E-value=0.52 Score=34.66 Aligned_cols=71 Identities=10% Similarity=0.132 Sum_probs=48.3
Q ss_pred CCChhhHHHHHHHHHhcCCHH---HHHHHHHhCCC-CC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 351 QPTIEHFVCLVDLLSRAGLLY---QAEEFIKIMPA-ED--KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 351 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.|+..+-..+..++.+..+.+ +++.+++.+.. .| .....-.+.-++.+.|++++|.++.+.+++..|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 567777777777777777644 45556665532 22 2334555666777888888888888888888888765
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.17 E-value=2.4 Score=36.27 Aligned_cols=26 Identities=19% Similarity=0.017 Sum_probs=13.5
Q ss_pred chhhHHHHHHHHHhCCChHHHHHHHH
Q 012360 118 MLNMENALLLMYAKCKEMDEALRLFD 143 (465)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 143 (465)
+...+..+...|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 34445555555555555555555443
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.82 E-value=6 Score=39.59 Aligned_cols=119 Identities=10% Similarity=0.018 Sum_probs=53.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCC-C--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCC
Q 012360 260 DMYSKCGSLEEALVTFYKTDC-K--DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV---SVLAACRHSGL 333 (465)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~l~~~~~~~~~ 333 (465)
..+...|+.+....++..+.+ . ++.-..++.-++...|+.+.+..+.+.+.... .|. .-|. .+.-+|+..|+
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCC
T ss_pred hhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCC
Confidence 334445555554444443221 1 12222233333445566666666666655431 111 1221 23344556666
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 334 ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
.....+++..+... ...++.....+.-++...|+.+.+.++++.+..
T Consensus 576 ~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 576 NSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK 622 (963)
T ss_dssp HHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred HHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 65555566666542 112222222333334445555555555554443
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.29 E-value=0.36 Score=36.62 Aligned_cols=116 Identities=9% Similarity=-0.032 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCccc
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI-------EHFVCLVDLLSRAGLLYQAEEFIKIMPA-----EDKFI 387 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~ 387 (465)
++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++... .....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445566667777777777777654332223331 2445566677777777777777665321 00000
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+...+. ....... -. ..+.+...-+.++.+|...|++++|+.+++.+.
T Consensus 102 ~~~~~~----~~ss~p~-------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ-------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccc----ccCCCcc-------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 000000 0000000 00 012334567789999999999999999998653
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.23 E-value=0.36 Score=36.62 Aligned_cols=94 Identities=12% Similarity=0.031 Sum_probs=46.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-----------
Q 012360 289 MIEGLANYGLGNEALRVFYQMERKG-IKPN-------EATFVSVLAACRHSGLITEGCQLFRRMGGVYR----------- 349 (465)
Q Consensus 289 l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------- 349 (465)
-+..+...+.++.|+-+...+.... ..|+ ..++..+.+++...+++.+|...|+++.+...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3444555555666555544432210 0122 12445555666666777777666666432111
Q ss_pred ------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 350 ------------VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 350 ------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
...+.+.-..+..+|.+.|++++|+.+++.++.
T Consensus 106 ~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 106 TGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 111223333455566666666666666666654
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.07 E-value=0.34 Score=35.10 Aligned_cols=71 Identities=10% Similarity=0.132 Sum_probs=39.8
Q ss_pred CCChhhHHHHHHHHHhcCCHH---HHHHHHHhCCC-CC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 351 QPTIEHFVCLVDLLSRAGLLY---QAEEFIKIMPA-ED--KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 351 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.|+..+--.+..++.+..+.+ +++.+++.+.. .| ....+-.+.-++.+.|++++|.+..+.+++..|.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 355555555666666655442 34555554432 22 2334445555666667777777777777666666654
No 249
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.03 E-value=6.5 Score=37.57 Aligned_cols=227 Identities=12% Similarity=-0.058 Sum_probs=119.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHH----HHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012360 196 KQPEEALELFKKMIDEGVTPDEEV----MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271 (465)
Q Consensus 196 g~~~~a~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 271 (465)
.+.+.|...+....+.. ..+... ...+.......+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 37889999998886543 223222 223333444555344555555554433 23333444455555678999999
Q ss_pred HHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 012360 272 LVTFYKTDCKD---VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348 (465)
Q Consensus 272 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 348 (465)
...|+.+.... ....--+..++...|+.++|..+|..+... . .-|..+.. .+.|..... ...
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~-~fYg~lAa--~~Lg~~~~~-------~~~- 369 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R-GFYPMVAA--QRIGEEYEL-------KID- 369 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C-SHHHHHHH--HHTTCCCCC-------CCC-
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C-ChHHHHHH--HHcCCCCCC-------CCC-
Confidence 99999987532 223344566777889999999999998742 1 12333321 222321000 000
Q ss_pred CCCCC-h-----hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC---CCC
Q 012360 349 RVQPT-I-----EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG---NQS 419 (465)
Q Consensus 349 ~~~~~-~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~ 419 (465)
...+. . .....-+..+...|....|...+..+....+......+.......|.++.++....+....+ ..-
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~ 449 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERF 449 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHS
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhC
Confidence 00010 0 01112345577788888888877766543333333444444556777777765554322211 001
Q ss_pred chhHHHHHHHHhhcCChHHHH
Q 012360 420 HEAYVLLSNFYALEGHWTEVA 440 (465)
Q Consensus 420 ~~~~~~l~~~~~~~g~~~~a~ 440 (465)
+..|..++....+.-.++.++
T Consensus 450 P~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 450 PLAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp CCTTHHHHHHHHTTSSSCHHH
T ss_pred CcchHHHHHHHHHHcCCCHHH
Confidence 223445555555554455433
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.67 E-value=4.5 Score=34.89 Aligned_cols=163 Identities=9% Similarity=0.032 Sum_probs=90.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHhccchh
Q 012360 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL----FKKMIDEGVTPDEEVMVSVLSACSSLSN 232 (465)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 232 (465)
+..-|.+.+++++|.+++-.- ...+.+.|+...+-++ ++.+.+.++++|......++..+.....
T Consensus 41 i~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~ 109 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQP 109 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 344456666666666654332 2334555665554444 3555567778887777777766654332
Q ss_pred h-----HhHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHH
Q 012360 233 L-----QYGRLVHRFILQNN--ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305 (465)
Q Consensus 233 ~-----~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 305 (465)
- .-.....++-.+.| ..-++.....+...|.+.+++.+|...|--...+++..+..++.-+...+...++
T Consensus 110 ~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~--- 186 (336)
T 3lpz_A 110 GEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA--- 186 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH---
T ss_pred CCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH---
Confidence 1 11222333333333 3456778888999999999999999888543333335554444433333221111
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 306 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
+... ...+--|.-.++...|..+++...
T Consensus 187 -----------dlfi-aRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 187 -----------PLYC-ARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -----------HHHH-HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------HHHH-HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1111 223334556678888877766654
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.29 E-value=12 Score=38.96 Aligned_cols=116 Identities=13% Similarity=0.075 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----C----------------------hhhHHHHHHHHHHcCChHHHHHH
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCK----D----------------------VVTWTTMIEGLANYGLGNEALRV 305 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------------------~~~~~~l~~~~~~~~~~~~a~~~ 305 (465)
+...-.+..++...|++++|.+.|++.... + ..-|..++..+-+.+.++.+.++
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333344566667777777777777654310 0 01244455555566666666655
Q ss_pred HHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCH
Q 012360 306 FYQMERKGIKPNE----ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370 (465)
Q Consensus 306 ~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 370 (465)
-....+....-+. ..|..+.+.+...|++++|...+-.+... .--......|+..++..|..
T Consensus 922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 922 SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhCCCh
Confidence 5554432111111 13455566666666666666666555422 12234455555555554443
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.34 E-value=2.1 Score=41.76 Aligned_cols=123 Identities=12% Similarity=-0.047 Sum_probs=73.9
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHHcCCCCchhh-H-HHHHHHhcchhh-hhhhhHHHHHHHHh------CCcc-c----
Q 012360 54 TLMSIYNDFSD-SGEVLILFKQLIFEGIVADKIT-L-VILFSACARLEK-LHYGKTVHCYATKV------GLEY-M---- 118 (465)
Q Consensus 54 ~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~-~-~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~---- 118 (465)
.++..+...++ .+.|..+|+++.... |.... + ..++..+...++ --+|.+++.+.++. ..++ +
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444445566 577999999998763 43333 2 223333333222 22344444444321 1111 1
Q ss_pred ------hhhHHHHHHHHHhCCChHHHHHHHHhh-CCCC-CchhHHHHHHHHHhcCChHHHHHHHHHhh
Q 012360 119 ------LNMENALLLMYAKCKEMDEALRLFDEM-GSRR-NIVSLNILINGYIDMELVDLAREVFDEIV 178 (465)
Q Consensus 119 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (465)
......=.+.+...|+++-|+++-++. ...| +-.+|..|..+|...|+++.|+-.++.++
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112222245566789999999998887 4455 45689999999999999999998888884
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=91.20 E-value=2.4 Score=28.67 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=60.7
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 311 (465)
..++|..|-+.+...+. ...+-..-+..+...|+|++|..+.+...-||...|.+|.. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777776653 22222233456778999999999999999999999887755 467888888888878877
Q ss_pred CCCCCCHHHH
Q 012360 312 KGIKPNEATF 321 (465)
Q Consensus 312 ~g~~p~~~~~ 321 (465)
+| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 76 4544444
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.93 E-value=2.6 Score=28.57 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=59.5
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 311 (465)
..++|..|-+.+...+. ...+-..-+..+...|+|++|..+.+...-||...|.+|... +.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45777777777776653 222222334567788999999999999999999988877654 56777888888777777
Q ss_pred CCCCCCHHHH
Q 012360 312 KGIKPNEATF 321 (465)
Q Consensus 312 ~g~~p~~~~~ 321 (465)
+| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 4544444
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.57 E-value=0.87 Score=30.77 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=30.5
Q ss_pred HHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 012360 25 IHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG 79 (465)
Q Consensus 25 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 79 (465)
+..+...|++++|..+.+....||...|-+|.. .+.|-.+++..-+.++..+|
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 445555666666666666666666666655544 35555555555555555544
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.05 E-value=0.94 Score=30.66 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=22.9
Q ss_pred HHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 012360 26 HFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE 78 (465)
Q Consensus 26 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 78 (465)
..+...|++++|..+.+....||...|-+|.. .+.|-.+++..-+.++..+
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 33444455555555555555455444444433 2334444444444444333
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.98 E-value=1.4 Score=30.01 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHH
Q 012360 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362 (465)
Q Consensus 300 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (465)
=+..+-++.+....+-|++......+++|.+.+++..|.++++-++.+ ..+...+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 345566666666777888888888888888888888888888888764 3333455666554
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.49 E-value=3 Score=30.71 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=37.0
Q ss_pred CCccchHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCC-CchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 383 EDKFISYKALLSACITYSE---FDLGKKVANNMMKLGNQ-SHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 383 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.++..+--.+.+++.+..+ ..+++.+++.....+|. .....+.|+.++.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444455555555443 33566666666665553 333555666666666666666666665544
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.36 E-value=3.1 Score=28.40 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHH
Q 012360 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK 112 (465)
Q Consensus 67 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (465)
+..+-++.+...++.|++......+++|-+.+++..|.++++-+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555555443
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.78 E-value=1.3 Score=36.70 Aligned_cols=58 Identities=16% Similarity=0.089 Sum_probs=35.2
Q ss_pred HHhcCCHHHHHHHHH-hCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 364 LSRAGLLYQAEEFIK-IMPAED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 364 ~~~~g~~~~A~~~~~-~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+.+.|.+++|++... .++.+| |...-..++..+|-.|++++|.+-++-..+++|....
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 445666666666443 344445 4445555666666677777777777777776665433
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.78 E-value=2.2 Score=30.98 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHhcCC---hHHHHHHHHHHHHhCC-CCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 386 FISYKALLSACITYSE---FDLGKKVANNMMKLGN-QSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 386 ~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+.+--.+.+++.+..+ ..+++.++++..+.+| .....+..|+.++.+.|++++|+++.+.+.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333334444444332 2345555555555444 223344555555555555555555555443
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.39 E-value=2.1 Score=38.28 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHhh-CC-CCCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 012360 123 NALLLMYAKCKEMDEALRLFDEM-GS-RRNIVSLNILINGYIDMELVDLAREVFDEI 177 (465)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (465)
..++..+...|++++|...+..+ .. +-+...|..++.++.+.|+..+|++.|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566667777777777766666 22 335567777777777777777777777665
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.30 E-value=13 Score=38.87 Aligned_cols=60 Identities=8% Similarity=-0.066 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCch----hHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGN-QSHE----AYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
|..++..+-+.+.++.++++.+.+++..+ ++.. .|..+...+...|++++|-..+-.+.+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 55566666666666667666666666442 2221 455666666667777776666554443
No 264
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=87.72 E-value=9.1 Score=30.38 Aligned_cols=20 Identities=5% Similarity=-0.145 Sum_probs=8.4
Q ss_pred CCCCcccHHHHHHHHHhcCC
Q 012360 45 PFRDVGSWNTLMSIYNDFSD 64 (465)
Q Consensus 45 ~~~~~~~~~~l~~~~~~~~~ 64 (465)
..++...-...+..+.+.|.
T Consensus 29 ~~~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 29 QDDSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHhCC
Confidence 33343333344444444444
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.44 E-value=6.1 Score=32.76 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=74.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh----hhHHHHHHHHH
Q 012360 291 EGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI----EHFVCLVDLLS 365 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 365 (465)
....+.|++++++.....-++. .| |...-..+++.+|-.|++++|.+-++...+ ..|+. ..|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a-- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA-- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH--
Confidence 3456778888998888887777 44 556667788889999999999988888773 24443 334444432
Q ss_pred hcCCHHHHH-HHHHhCCCCC----ccchH-HHHHHHHH--hcCChHHHHHHHHHHHHhCCCCch
Q 012360 366 RAGLLYQAE-EFIKIMPAED----KFISY-KALLSACI--TYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 366 ~~g~~~~A~-~~~~~~~~~~----~~~~~-~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+..+ ++|.--. .| .+.-| ..++.+.. ..|+.++|.++-.++.+.-|..+.
T Consensus 78 -----E~~R~~vfaG~~-~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 -----AQARKDFAQGAA-TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp -----HHHHHHHTTSCC-CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred -----HHHHHHHHcCCC-CCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 1222111 11 22223 34444443 468999999999999888776655
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.95 E-value=14 Score=31.66 Aligned_cols=164 Identities=12% Similarity=0.045 Sum_probs=92.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHhccch-
Q 012360 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL----FKKMIDEGVTPDEEVMVSVLSACSSLS- 231 (465)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~- 231 (465)
+..-|.+.+++++|.+++..- ...+.+.|+...|-++ ++...+.+.+++......++..+..-.
T Consensus 39 l~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~ 107 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDP 107 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 344455556666666554332 2335556666655543 555566778888887777777665422
Q ss_pred ----hhHhHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHc---CChHHH
Q 012360 232 ----NLQYGRLVHRFILQNN--ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY---GLGNEA 302 (465)
Q Consensus 232 ----~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a 302 (465)
+..-.....++..+.| ...++.....+...|.+.|++.+|...|-.....+...+..++.-+... |...++
T Consensus 108 ~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~ 187 (312)
T 2wpv_A 108 SEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTV 187 (312)
T ss_dssp TCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred CCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchH
Confidence 1222333344444433 2346778889999999999999998877633322344444444333322 222221
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012360 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346 (465)
Q Consensus 303 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (465)
- .. ....+-.|.-.|+...|..+++...+
T Consensus 188 d--------------lf-~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 188 A--------------EF-FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp H--------------HH-HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred H--------------HH-HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 11 12223335567888888888887653
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.88 E-value=3.6 Score=29.76 Aligned_cols=60 Identities=13% Similarity=0.236 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHH
Q 012360 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (465)
+..+-++.+....+-|++......+++|.+.+++..|.++|+-++.+ ..+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 45556666666778889999999999999999999999999988864 3344556766654
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.30 E-value=7.1 Score=28.31 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=23.2
Q ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh
Q 012360 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145 (465)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 145 (465)
.+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+-+
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~v 114 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 114 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444445555555566666666666666666666555
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.66 E-value=9.9 Score=29.90 Aligned_cols=50 Identities=12% Similarity=-0.025 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHhCCC----CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 367 AGLLYQAEEFIKIMPA----EDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
++...++.++|..|.. ..-...|......+-..|++++|.++|+..++.+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3446677777776643 2244556777777777888888888888888765
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.82 E-value=6.5 Score=35.69 Aligned_cols=61 Identities=7% Similarity=-0.022 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVY-RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (465)
+...+...|.+.|+++.|.+.+.++.... +...-...+..+++.+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45556666666777777777776665421 11222445555666666666666666666554
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.17 E-value=29 Score=30.85 Aligned_cols=282 Identities=13% Similarity=0.056 Sum_probs=140.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhh----CCCC---CchhHHHHHHHHHhc-CChHHHHHHHHHhhc----C-ChH----H
Q 012360 122 ENALLLMYAKCKEMDEALRLFDEM----GSRR---NIVSLNILINGYIDM-ELVDLAREVFDEIVD----K-DIV----L 184 (465)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~----~-~~~----~ 184 (465)
...|...|.+.|+.++..+++... +.-| .......+++.+... +..+.-.++..+..+ . -.. .
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777766 1111 122344556655543 333333444444322 1 111 1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhccchhhHhHHHHHHHHHHc--CCCCChhHHH-
Q 012360 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPD-----EEVMVSVLSACSSLSNLQYGRLVHRFILQN--NITQDAFVKT- 256 (465)
Q Consensus 185 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~- 256 (465)
-.-++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+...... .+.+++.+..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 23578889999999999999988886422222 223445556677888999998888877553 2223333222
Q ss_pred ---HHHHHHH-hcCCHHHHHHHHhcCC----CC------ChhhHHHHHHHHHHcCChHHHHHHHH-HHHHCCCCCCHHHH
Q 012360 257 ---ALIDMYS-KCGSLEEALVTFYKTD----CK------DVVTWTTMIEGLANYGLGNEALRVFY-QMERKGIKPNEATF 321 (465)
Q Consensus 257 ---~l~~~~~-~~~~~~~a~~~~~~~~----~~------~~~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~~ 321 (465)
.-...+. ..+++..|...|-+.. +. +...|..+... .. ++..+...++. .....-..|....+
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l~-~~r~el~~~l~~~~~~~~~~pei~~l 259 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-ML-GQSDDVNQLVSGKLAITYSGRDIDAM 259 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-HT-TCGGGHHHHHHSHHHHTTCSHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-Hc-CCHHHHHHHhccccccccCCccHHHH
Confidence 2233345 6788888877664321 11 11123222222 22 22222222221 11111123444455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCC
Q 012360 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401 (465)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 401 (465)
..++.+| ..+++.....+++.... .+..|......+-..+. .-...+. ..+...-...++..+...+.- .
T Consensus 260 ~~L~~a~-~~~dl~~f~~iL~~~~~--~l~~D~~l~~h~~~L~~--~Ir~~~L---~~i~~pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 260 KSVAEAS-HKRSLADFQAALKEYKK--ELAEDVIVQAHLGTLYD--TMLEQNL---CRIIEPYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHSTT--TTTTSHHHHHHHHHHHH--HHHHHHH---HHHHTTCSEEEHHHHHHHHTC--C
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHH--HHhcChHHHHHHHHHHH--HHHHHHH---HHHhHhhceeeHHHHHHHHCc--C
Confidence 5555554 44677777777666653 23334332111110000 0001111 111111244556666655533 5
Q ss_pred hHHHHHHHHHHHHh
Q 012360 402 FDLGKKVANNMMKL 415 (465)
Q Consensus 402 ~~~a~~~~~~~~~~ 415 (465)
.++++..+-+|+..
T Consensus 330 ~~evE~~L~~lI~d 343 (394)
T 3txn_A 330 MPQVEKKLSQMILD 343 (394)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 67777777777763
No 272
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=80.64 E-value=19 Score=28.39 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=25.6
Q ss_pred CCcchhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCC
Q 012360 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64 (465)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 64 (465)
.++..+-...+..+.+.|..+..-.+.+.+..++...-...+.++.+.++
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 44555555555666665554444444444444454444445555555554
No 273
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=79.83 E-value=28 Score=29.73 Aligned_cols=198 Identities=10% Similarity=0.076 Sum_probs=97.2
Q ss_pred hhHHHHHHHccCChHHHHHHhccCCCCCcc--cHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCchhh---HHHHHHH
Q 012360 21 GNSLIHFYGRMALFTDARVLFDKMPFRDVG--SWNTLMSIYNDFSD--SGEVLILFKQLIFEGIVADKIT---LVILFSA 93 (465)
Q Consensus 21 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~---~~~l~~~ 93 (465)
...++.-|-..|+.++|...++++..|... .-..++......++ -+.+-.++..+.. ++-+.... |..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 456788898899999999999999876421 22233333333332 2334556666653 33333322 3333333
Q ss_pred hcchh-hhhhhhHHHHHHHH----hCCccchhhHHHHHHHHHhCC--ChHHHHHHHH------hh----CCCC---Cch-
Q 012360 94 CARLE-KLHYGKTVHCYATK----VGLEYMLNMENALLLMYAKCK--EMDEALRLFD------EM----GSRR---NIV- 152 (465)
Q Consensus 94 ~~~~~-~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~------~~----~~~~---~~~- 152 (465)
+-... +...|...+..+.. .++-|........-..-...| -...|..++. .. |..- +..
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Confidence 32221 33344444443332 232221111110000000000 0122222221 01 2111 111
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCCHHH
Q 012360 153 ---SLNILINGYIDMELVDLAREVFDEIVDKD---IVLWRSMMHGCVKAKQ--PEEALELFKKMIDEGVTPDEEV 219 (465)
Q Consensus 153 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~ 219 (465)
....++.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+.+++..+.+.|+-+....
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 24577888888999999999999997662 2344444555544432 4556778888877766554433
No 274
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=79.17 E-value=21 Score=27.91 Aligned_cols=160 Identities=7% Similarity=-0.047 Sum_probs=77.1
Q ss_pred hccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchh
Q 012360 41 FDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120 (465)
Q Consensus 41 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 120 (465)
++.+..+|...-...+..+.+.+..+. ...+..+.. .++...-...+.++...++.+ +...+..+.. .++..
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~ 91 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGW 91 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHH
Confidence 333334444444444455555554322 222223222 234444444444444444332 2222222222 34445
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhH
Q 012360 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200 (465)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 200 (465)
+-...+.++.+.|+.+....+.+.+. .++...-...+.++.+.+..+....+...+..++..+-...+.++...|. .+
T Consensus 92 vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~ 169 (201)
T 3ltj_A 92 VRQSAAVALGQIGDERAVEPLIKALK-DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ER 169 (201)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hh
Confidence 55555666666665443333333332 55555555666666666654444444444455666666666677766665 44
Q ss_pred HHHHHHHHHH
Q 012360 201 ALELFKKMID 210 (465)
Q Consensus 201 a~~~~~~~~~ 210 (465)
+...+..+.+
T Consensus 170 ~~~~L~~~l~ 179 (201)
T 3ltj_A 170 VRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=76.13 E-value=19 Score=26.85 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhC--CCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 405 GKKVANNMMKLG--NQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 405 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+..+|..|...+ -..+..|...+..+...|++.+|.++++.-.+.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 455555555433 334444555555555555555555555544433
No 276
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=75.74 E-value=13 Score=29.81 Aligned_cols=110 Identities=15% Similarity=0.062 Sum_probs=47.3
Q ss_pred HHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhh---HHHHHHHhcchhh
Q 012360 26 HFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKIT---LVILFSACARLEK 99 (465)
Q Consensus 26 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~l~~~~~~~~~ 99 (465)
...++.|+++....+++.-... +..-. +.+...++.|+.+ +++.+.+.|..++... -...+...+..|+
T Consensus 14 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 14 VKATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred HHHHHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence 3455677777777776653322 22222 2334445556653 3334444443322111 0112223333444
Q ss_pred hhhhhHHHHHHHHhCCccchhh--HHHHHHHHHhCCChHHHHHHHHh
Q 012360 100 LHYGKTVHCYATKVGLEYMLNM--ENALLLMYAKCKEMDEALRLFDE 144 (465)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~ 144 (465)
.+ +++.+.+.|..++... ....+...+..|+.+-+..+++.
T Consensus 89 ~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 89 LS----MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 33 3444445554443221 11233444555666655555543
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.21 E-value=16 Score=33.12 Aligned_cols=57 Identities=12% Similarity=0.016 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHhh-----CCCCCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 012360 121 MENALLLMYAKCKEMDEALRLFDEM-----GSRRNIVSLNILINGYIDMELVDLAREVFDEI 177 (465)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (465)
+...+...|.+.|+++.|.+.|.++ +...-...+-..++.+...+++..+...+.+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4455666666777777777776666 11222234444555555555555555555444
No 278
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=69.44 E-value=24 Score=29.55 Aligned_cols=20 Identities=5% Similarity=-0.199 Sum_probs=10.0
Q ss_pred HHHHHHccCChHHHHHHhcc
Q 012360 24 LIHFYGRMALFTDARVLFDK 43 (465)
Q Consensus 24 l~~~~~~~~~~~~A~~~~~~ 43 (465)
.+...+..|+.+-+..+++.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhC
Confidence 34444455555555555544
No 279
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=68.72 E-value=39 Score=26.25 Aligned_cols=152 Identities=11% Similarity=-0.029 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 331 (465)
..+-...+..+...+..+....+.+.+..++...-...+.++...+..+ +...+..+.. .++...-...+.++...
T Consensus 28 ~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 28 YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQI 103 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 3333333444444444333333333344455554444555555555543 3333333332 35666666666777776
Q ss_pred CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHH
Q 012360 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (465)
++.+. ...+..+.. .++..+-...+.++.+.|..+ +...+..+...++..+-...+.++...|+ +++...+..
T Consensus 104 ~~~~~-~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~ 176 (201)
T 3ltj_A 104 GDERA-VEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEK 176 (201)
T ss_dssp CCGGG-HHHHHHHTT----CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred CcHHH-HHHHHHHHc----CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 66543 333344443 255666666677777777644 34444444445566666666666666665 445566666
Q ss_pred HHH
Q 012360 412 MMK 414 (465)
Q Consensus 412 ~~~ 414 (465)
+.+
T Consensus 177 ~l~ 179 (201)
T 3ltj_A 177 LAE 179 (201)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.70 E-value=37 Score=26.71 Aligned_cols=57 Identities=11% Similarity=-0.067 Sum_probs=37.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCchh-hHHHHHHHhcchhhhhhhhHHHHHHHHhCCccc
Q 012360 62 FSDSGEVLILFKQLIFEGIVADKI-TLVILFSACARLEKLHYGKTVHCYATKVGLEYM 118 (465)
Q Consensus 62 ~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 118 (465)
.++..++.++|..|...|+.-... .|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344667788888887777654443 345555556667778888887777777665553
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=66.65 E-value=29 Score=26.26 Aligned_cols=32 Identities=6% Similarity=-0.017 Sum_probs=21.7
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 385 KFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
-...|......+-..|++.+|.++|+..++.+
T Consensus 95 ~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 95 LAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34456666666667777777777777777765
No 282
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.29 E-value=77 Score=28.76 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC-CCC--CC--h
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERK--GIKPN---EATFVSVLAACRHSGLITEGCQLFRRMGGVY-RVQ--PT--I 354 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~--~ 354 (465)
....|...+...|++.+|..++..+... |..+. ...+...++.|...+++.+|..++.++.... ... |+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778889999999999999997542 22222 2356666788999999999999999874311 112 22 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 355 EHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 355 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
..+...+..+...+++.+|.+.|.++-
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455677788888999999988776653
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=64.90 E-value=22 Score=25.65 Aligned_cols=63 Identities=11% Similarity=0.111 Sum_probs=40.7
Q ss_pred hhHHHHHHHccCChHHHHHHhccCCCCCc---ccHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCc
Q 012360 21 GNSLIHFYGRMALFTDARVLFDKMPFRDV---GSWNTLMSIYNDFSD--SGEVLILFKQLIFEGIVAD 83 (465)
Q Consensus 21 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~ 83 (465)
.+.++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+....++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 45678888888999999999998876622 223334444444432 3567777777777665433
No 284
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.31 E-value=91 Score=28.87 Aligned_cols=60 Identities=13% Similarity=0.014 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh-h------hHH-HHHHHHHHcCChHHHHHHHHHHHHC
Q 012360 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDV-V------TWT-TMIEGLANYGLGNEALRVFYQMERK 312 (465)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~------~~~-~l~~~~~~~~~~~~a~~~~~~m~~~ 312 (465)
..++.+++.|...+.++.|..+..+..-|.. . .|. -+...+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4556666666666677777666666543321 1 111 1234445566677776666665543
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.30 E-value=44 Score=27.49 Aligned_cols=57 Identities=11% Similarity=-0.070 Sum_probs=30.1
Q ss_pred HHHHHHHccCChHHHHHHhccCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 012360 23 SLIHFYGRMALFTDARVLFDKMPFRDVG---SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVAD 83 (465)
Q Consensus 23 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 83 (465)
..+...++.|+++-...+++.-...+.. .-.+.+...+..|+.+ +++.+.+.|..|+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPV 66 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCc
Confidence 4556667778888777777764433221 1122334445556653 4444455554443
No 286
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=58.48 E-value=42 Score=26.88 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCC----CccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 371 YQAEEFIKIMPAE----DKFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 371 ~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
+.+.++|..|..+ .-...|......+-..|++.+|.++|+..++.+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4555666555332 244557777777778888888888888888866
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.44 E-value=55 Score=24.41 Aligned_cols=19 Identities=26% Similarity=0.163 Sum_probs=7.3
Q ss_pred ccchhhHhHHHHHHHHHHc
Q 012360 228 SSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~ 246 (465)
...|++.+|..+|+.-++.
T Consensus 112 E~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 112 EAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHc
Confidence 3333333333333333333
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.20 E-value=95 Score=27.13 Aligned_cols=69 Identities=10% Similarity=0.185 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCCHHHHHH
Q 012360 154 LNILINGYIDMELVDLAREVFDEIVDKD---IVLWRSMMHGCVKAKQ--PEEALELFKKMIDEGVTPDEEVMVS 222 (465)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (465)
...++.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+.+++..+...|+-+.......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 4677888888899999999999886663 2344444555544332 3457777777777766554443333
No 289
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=58.15 E-value=43 Score=26.13 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=16.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 012360 394 SACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 427 (465)
..|.+.|.+++|.+++++.....|++...-..|.
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~ 158 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLL 158 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 4456666666666666665554444443333333
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=57.93 E-value=75 Score=25.81 Aligned_cols=88 Identities=10% Similarity=-0.036 Sum_probs=54.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc--CCCC----chhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHH
Q 012360 55 LMSIYNDFSDSGEVLILFKQLIFE--GIVA----DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLM 128 (465)
Q Consensus 55 l~~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (465)
-++.+....++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 467788889999999988876542 2222 122333344444444444445555555522 3344455667788
Q ss_pred HHhCCChHHHHHHHHhh
Q 012360 129 YAKCKEMDEALRLFDEM 145 (465)
Q Consensus 129 ~~~~g~~~~A~~~~~~~ 145 (465)
+.+.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 88899999999988665
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=57.75 E-value=19 Score=26.96 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=40.4
Q ss_pred hhHHHHHHHccCChHHHHHHhccCCCCC---cccHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCc
Q 012360 21 GNSLIHFYGRMALFTDARVLFDKMPFRD---VGSWNTLMSIYNDFSD--SGEVLILFKQLIFEGIVAD 83 (465)
Q Consensus 21 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~ 83 (465)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567888888899999999999887662 1233344444444322 3456777777777665433
No 292
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=56.04 E-value=37 Score=22.96 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=27.7
Q ss_pred CChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHH
Q 012360 32 ALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEV 68 (465)
Q Consensus 32 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 68 (465)
.+.+.|.++++.++.....+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4677888888888888888888888888766665444
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.76 E-value=85 Score=25.48 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=40.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHc--CCCC----CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 012360 189 MHGCVKAKQPEEALELFKKMIDE--GVTP----DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262 (465)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (465)
++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 55667777777777777765531 2221 111122222222222223333334444422 33444455555666
Q ss_pred HhcCCHHHHHHHH
Q 012360 263 SKCGSLEEALVTF 275 (465)
Q Consensus 263 ~~~~~~~~a~~~~ 275 (465)
.+.|+.++|.++|
T Consensus 102 ~rLg~~~~A~~lf 114 (235)
T 2d2s_A 102 IKLGLPEQALDLF 114 (235)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHCCChhHHHHHH
Confidence 6666666666665
No 294
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=53.94 E-value=90 Score=25.53 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=8.5
Q ss_pred HHHhcCCHHHHHHHHHH
Q 012360 327 ACRHSGLITEGCQLFRR 343 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~ 343 (465)
..+..|+.+-+..+++.
T Consensus 154 ~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDE 170 (285)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 33445666555555443
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=51.24 E-value=73 Score=23.71 Aligned_cols=61 Identities=11% Similarity=0.198 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCC
Q 012360 155 NILINGYIDMELVDLAREVFDEIVDKD---IVLWRSMMHGCVKAKQ--PEEALELFKKMIDEGVTP 215 (465)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~ 215 (465)
..++.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 344555555555555555555554331 1233333334433222 334556666666555443
No 296
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=51.17 E-value=26 Score=28.72 Aligned_cols=54 Identities=9% Similarity=-0.199 Sum_probs=28.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchh-------hHHHHHHHhc--chhhhhhhhHHHHHH
Q 012360 57 SIYNDFSDSGEVLILFKQLIFEGIVADKI-------TLVILFSACA--RLEKLHYGKTVHCYA 110 (465)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~ 110 (465)
...++.|+.+....+++.+.+.|..++.. -.+.+..+.. +.|+.+-+..+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 33456677777777777666665544422 2233333322 456665555555543
No 297
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=50.92 E-value=50 Score=28.70 Aligned_cols=91 Identities=15% Similarity=-0.034 Sum_probs=44.8
Q ss_pred hHHHHHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchh
Q 012360 22 NSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE 98 (465)
Q Consensus 22 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 98 (465)
.+.+...+..|+.+-+..+++.-..+ |..-++.| ...+..|+.+ +++.+.+.|..++...-...+...+..|
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~g~~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~g 95 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL-HLACKFGCVD----TAKYLASVGEVHSLWHGQKPIHLAVMAN 95 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHCCHH----HHHHHHHHCCCCCCBTTBCHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHH-HHHHHcCCHH----HHHHHHHCCCCccccCCCCHHHHHHHcC
Confidence 34456666778888888887763322 22223333 3334556653 3344444444333311112233334456
Q ss_pred hhhhhhHHHHHHHHhCCcc
Q 012360 99 KLHYGKTVHCYATKVGLEY 117 (465)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~ 117 (465)
+.+-+..+++.....|..+
T Consensus 96 ~~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 96 KTDLVVALVEGAKERGQMP 114 (364)
T ss_dssp CHHHHHHHHHHHHHHTCCH
T ss_pred CHHHHHHHHHhccccCCCH
Confidence 6665555555544434433
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.52 E-value=48 Score=30.66 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI---EHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
..++.+++.|...+.++.|..+..+..--....++. ..+..+...+.-.+++.+|.+.+....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 467788888999999999999999885210111221 122345677778889999988877654
No 299
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=49.88 E-value=68 Score=27.35 Aligned_cols=67 Identities=9% Similarity=0.029 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch--hhHhHHHHHHHHHHcCCCCCh
Q 012360 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS--NLQYGRLVHRFILQNNITQDA 252 (465)
Q Consensus 185 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~ 252 (465)
.+.++.-|...|+.++|...++++...... .......+..+.-+.+ ..+....++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 456777788888888888888887421111 1223334444444432 345566777777766654433
No 300
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=48.75 E-value=1.3e+02 Score=26.73 Aligned_cols=145 Identities=10% Similarity=0.028 Sum_probs=67.8
Q ss_pred hHHHHHHHccCChHHHHHHhccCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh---hHHHHHHHhc
Q 012360 22 NSLIHFYGRMALFTDARVLFDKMPFRDV---GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKI---TLVILFSACA 95 (465)
Q Consensus 22 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~l~~~~~ 95 (465)
.+.+...+..|+.+-+..+++.-..++. ... +.+...+..|+.+-+.-+ .+.|..++.. .. +.+...+
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~-t~L~~A~ 88 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQ-TPLHCAA 88 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC-CHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSC-CHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCC-CHHHHHH
Confidence 3456667778888888888876443322 222 233444556766544333 3444333221 11 1223333
Q ss_pred chhhhhhhhHHHHHHHHhCCccchhh--HHHHHHHHHhCCChHHHHHHHHhhCCCCCc--hhHHHHHHHHHhcCChHHHH
Q 012360 96 RLEKLHYGKTVHCYATKVGLEYMLNM--ENALLLMYAKCKEMDEALRLFDEMGSRRNI--VSLNILINGYIDMELVDLAR 171 (465)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~ 171 (465)
..|+.+ +.+.+.+.|..++... ....+...++.|+.+-+..+++.-. .++. ..-.+.+...+..|+.+-+.
T Consensus 89 ~~g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~ 163 (437)
T 1n11_A 89 RIGHTN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA-SQACMTKKGFTPLHVAAKYGKVRVAE 163 (437)
T ss_dssp HHTCHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HCCCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence 445543 4444455554443221 1123334455677776666665531 1110 01112233445556666555
Q ss_pred HHHHHh
Q 012360 172 EVFDEI 177 (465)
Q Consensus 172 ~~~~~~ 177 (465)
-+++.-
T Consensus 164 ~Ll~~g 169 (437)
T 1n11_A 164 LLLERD 169 (437)
T ss_dssp HHHHTT
T ss_pred HHHhCC
Confidence 555543
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.82 E-value=2.5e+02 Score=28.57 Aligned_cols=104 Identities=7% Similarity=-0.134 Sum_probs=55.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC---CC----------------
Q 012360 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA---ED---------------- 384 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~---------------- 384 (465)
++..|...|.++-+.++..-+ +.++..-..+..+|...|++++|...|+++-. .+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 445555566655544332211 22222233455666667777777777665431 00
Q ss_pred ------ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCch----hHHHHHHHHhhc
Q 012360 385 ------KFISYKALLSACITYSEFDLGKKVANNMMKLG-NQSHE----AYVLLSNFYALE 433 (465)
Q Consensus 385 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~----~~~~l~~~~~~~ 433 (465)
....|..++..+-+.+-++-++++.+.+++.- ++++. .|..+..+.+..
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 11246667777777777777777777777643 44443 344444444433
No 302
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=46.41 E-value=1.2e+02 Score=24.91 Aligned_cols=91 Identities=13% Similarity=-0.023 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHH
Q 012360 316 PNEATFVSVLAACRHSG-LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394 (465)
Q Consensus 316 p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 394 (465)
++...-...+.++...+ ....+...+..+.. .++..+-...+.++.+.|+......+...+. .++ .-...+.
T Consensus 171 ~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~ 243 (280)
T 1oyz_A 171 PNGDVRNWAAFAININKYDNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIE 243 (280)
T ss_dssp SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHH
Confidence 34443334444444433 12334444444442 2444455555566666665433333333333 222 2233344
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 012360 395 ACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~ 414 (465)
++.+.|+ ..+...+.++.+
T Consensus 244 aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 244 AAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHCC-GGGHHHHHHHHT
T ss_pred HHHhcCc-hhhhHHHHHHHh
Confidence 4555554 244444444444
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.04 E-value=80 Score=22.66 Aligned_cols=62 Identities=11% Similarity=0.175 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCC
Q 012360 155 NILINGYIDMELVDLAREVFDEIVDKD---IVLWRSMMHGCVKAKQ--PEEALELFKKMIDEGVTPD 216 (465)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~ 216 (465)
..++.-|...|+.++|...++++..|. ..+...+..++-+.+. .+.+..++..+.+.|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 345555555566666666666654442 1233333444444322 3456666666666554433
No 304
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.04 E-value=1.3e+02 Score=24.89 Aligned_cols=140 Identities=5% Similarity=-0.030 Sum_probs=62.9
Q ss_pred hccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHH
Q 012360 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK---DVVTWTTMIEGLANYGLGNEAL 303 (465)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 303 (465)
.+..|+.+.+.. +.+.|..++..--.+.+...+..|+.+-+..+++....+ +...++.|. ..+..|+.+-+.
T Consensus 38 A~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~~v~ 112 (285)
T 3kea_A 38 AIADNNVRLVCT----LLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY-YAVDSGNMQTVK 112 (285)
T ss_dssp HHHTTCHHHHHH----HHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred HHHcCCHHHHHH----HHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH-HHHHcCCHHHHH
Confidence 344565554443 344444333221223445556677777777777654433 222233333 334556655444
Q ss_pred HHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 012360 304 RVFYQMERKGIKPNEA---TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379 (465)
Q Consensus 304 ~~~~~m~~~g~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (465)
.++ +.|..++.. .+.+.+...+..|+.+-+.-+++.-.. ..+...-...+...+..|+.+-+.-+++.
T Consensus 113 ~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 113 LFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS----TFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT----TCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc----cccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 333 334444322 112334444555665544444332211 11221222333344566777666666543
No 305
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=44.48 E-value=74 Score=29.37 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 012360 400 SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 400 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 443 (465)
..++.|...|.++..+.|.+...|+.|+......|+.-+|.-++
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y 209 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY 209 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHH
Confidence 34456666666666666666666666666666655555544333
No 306
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=43.62 E-value=49 Score=24.34 Aligned_cols=35 Identities=3% Similarity=-0.171 Sum_probs=14.5
Q ss_pred hhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCC
Q 012360 99 KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133 (465)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (465)
..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33444444444444433333333333344444444
No 307
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=43.20 E-value=1.2e+02 Score=23.81 Aligned_cols=62 Identities=5% Similarity=0.046 Sum_probs=38.8
Q ss_pred HHHHHHH---HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchh-----hHhHHHHHHHHHHcCCC
Q 012360 187 SMMHGCV---KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN-----LQYGRLVHRFILQNNIT 249 (465)
Q Consensus 187 ~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 249 (465)
-+|+++. +-.+.+.|+-++-+|++.| .|....-..++.+....|. ...|...++.....|.+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3455554 4578999999999999999 7665555555555555443 23444455555555543
No 308
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=42.99 E-value=1.6e+02 Score=25.50 Aligned_cols=140 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhcC---ChHHHHHHHHHHHH-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc
Q 012360 155 NILINGYIDMELVDLAREVFDEIVDK---DIVLWRSMMHGCVK-AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL 230 (465)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 230 (465)
..++.-|...|+.++|...++++..| ...+...+..++-+ ....+.+..++..+.+.|+-+.......+-..+...
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Q ss_pred hh--------hHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHH
Q 012360 231 SN--------LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302 (465)
Q Consensus 231 ~~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 302 (465)
.| +.....+...+...|..|-...+..+...+...|........ .+..+.+....+.+
T Consensus 95 ~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~--------------vl~~l~~~~g~~~l 160 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLE--------------ILGLLCKSMGPKKV 160 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHH--------------HHHHHHHHHCHHHH
T ss_pred hHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHH--------------HHHHHHHHcCHHHH
Q ss_pred HHHHHH
Q 012360 303 LRVFYQ 308 (465)
Q Consensus 303 ~~~~~~ 308 (465)
..+|.+
T Consensus 161 ~~~~~~ 166 (339)
T 1ug3_A 161 GTLWRE 166 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 309
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=40.56 E-value=1.1e+02 Score=22.62 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=37.0
Q ss_pred HHHHHcCCCCchhhHHHHHHHhcchh-hhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh
Q 012360 73 KQLIFEGIVADKITLVILFSACARLE-KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135 (465)
Q Consensus 73 ~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 135 (465)
+.|.+.|+.++..- ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34556676655443 24455555555 5667788888887776555655555555666665543
No 310
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=40.31 E-value=32 Score=20.71 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHcCCCCchhhHHHHHHHh
Q 012360 65 SGEVLILFKQLIFEGIVADKITLVILFSAC 94 (465)
Q Consensus 65 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 94 (465)
.++|.+.|.+|++..-.++..||..+++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 367788888877655456667888777776
No 311
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=39.56 E-value=1.8e+02 Score=24.75 Aligned_cols=56 Identities=14% Similarity=0.101 Sum_probs=29.0
Q ss_pred hHHHHHHHccCChHHHHHHhccCCCCCcc----cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 012360 22 NSLIHFYGRMALFTDARVLFDKMPFRDVG----SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVA 82 (465)
Q Consensus 22 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 82 (465)
++.+...++.|+++-+..+++.-..+|.. -++.|. ..++.|+.+ +.+.+.+.|..|
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh-~A~~~g~~~----iv~~Ll~~ga~~ 85 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLH-NAVQMSRED----IVELLLRHGADP 85 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCT
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHH-HHHHcCCHH----HHHHHHHcCCch
Confidence 44555667778888777777754333221 223333 334556543 344444555444
No 312
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.26 E-value=1.4e+02 Score=23.49 Aligned_cols=20 Identities=0% Similarity=-0.067 Sum_probs=9.9
Q ss_pred HHHhhcCChHHHHHHHHHHH
Q 012360 428 NFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 428 ~~~~~~g~~~~a~~~~~~~~ 447 (465)
....+.|+.+-+.-+++...
T Consensus 215 ~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 215 DLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHcCcHHHHHHHHHhhh
Confidence 33445666655555555433
No 313
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.41 E-value=55 Score=24.69 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=36.9
Q ss_pred hHHHHHHHH-HHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHh--CCccchhhHHHHHHHHHhCCCh
Q 012360 66 GEVLILFKQ-LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKV--GLEYMLNMENALLLMYAKCKEM 135 (465)
Q Consensus 66 ~~a~~~~~~-m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 135 (465)
+.+++-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 333433333 34456555433 234455555555666677777777666 5555555544455666666654
No 314
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.30 E-value=69 Score=23.71 Aligned_cols=37 Identities=5% Similarity=-0.105 Sum_probs=16.5
Q ss_pred hhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCC
Q 012360 98 EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134 (465)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 134 (465)
+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 40 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 40 GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3344455555555444433444333333444444443
No 315
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=37.73 E-value=56 Score=23.49 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=30.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhh
Q 012360 54 TLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99 (465)
Q Consensus 54 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 99 (465)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4556666666777888888888777655566666566666655553
No 316
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=37.31 E-value=54 Score=19.70 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHH-hhcCChHHHHHHHHHHHHhcCCCCCC
Q 012360 407 KVANNMMKLGNQSHEAYVLLSNFY-ALEGHWTEVAEARRNMKELQTRKKPG 456 (465)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~ 456 (465)
+.++.+.+..|+-.. ..+-.++ ...|+.+.|...+-.|...+..|+.|
T Consensus 11 e~l~~L~emFP~ld~--~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~~ 59 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQ--EVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSSG 59 (59)
T ss_dssp HHHHHHHHHCSSSCH--HHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCCC
T ss_pred HHHHHHHHHCCCCCH--HHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCCC
Confidence 334444445555432 2222333 34567777777777777666666543
No 317
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.09 E-value=79 Score=25.09 Aligned_cols=208 Identities=15% Similarity=0.062 Sum_probs=96.1
Q ss_pred HHHHHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch---hhHHHHHHHhcc
Q 012360 23 SLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADK---ITLVILFSACAR 96 (465)
Q Consensus 23 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~ 96 (465)
+.+...+..|+.+-...+++.-... +..-++.|. ..+..|+.+ +++.+.+.|..++. ...+. +...+.
T Consensus 13 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~ 86 (237)
T 3b7b_A 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLM-EAAENNHLE----AVKYLIKAGALVDPKDAEGSTC-LHLAAK 86 (237)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHTTCHH----HHHHHHTTTCCCCCCCTTSCCH-HHHHHH
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHH-HHHHhCCHH----HHHHHHhCCCCCCCCCCCCCcH-HHHHHH
Confidence 4456666777777776666653322 222233333 334456654 33444445543322 11222 222333
Q ss_pred hhhhhhhhHHHHHHHHhC-Cccchh--hHHHHHHHHHhCCChHHHHHHHHhhCCCCCch--hHHHHHHHHHhcCChHHHH
Q 012360 97 LEKLHYGKTVHCYATKVG-LEYMLN--MENALLLMYAKCKEMDEALRLFDEMGSRRNIV--SLNILINGYIDMELVDLAR 171 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~ 171 (465)
.|+.+ +++.+.+.| ..++.. .....+...+..|+.+-+..+++. +..++.. .-.+.+...+..|+.+-+.
T Consensus 87 ~~~~~----~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 87 KGHYE----VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp TTCHH----HHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred cCCHH----HHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence 44433 344444444 222211 111233344556776655555543 2232221 1112334445567766665
Q ss_pred HHHHHhhcC---ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhccchhhHhHHHHHHHHHHc
Q 012360 172 EVFDEIVDK---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE--VMVSVLSACSSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 172 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (465)
-+++.-..+ +..-.+ .+...++.|+.+-+ +.+.+.|..++.. .-.+.+......|+...+.++.+.+.++
T Consensus 162 ~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 162 ILLAAKCDLHAVNIHGDS-PLHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp HHHTTTCCTTCCCTTCCC-HHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCCcCCCCCC-HHHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 555543322 111122 23334456665543 3444555544321 1123445567788888888888877653
No 318
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=36.91 E-value=1.5e+02 Score=23.18 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=32.2
Q ss_pred HHHHHHHH---HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch
Q 012360 186 RSMMHGCV---KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231 (465)
Q Consensus 186 ~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 231 (465)
--+|+++. +-.+.+.|+-.+-+|++.|-.|....-..++.+....|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34455554 45789999999999999988876655555555554444
No 319
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=36.27 E-value=52 Score=22.20 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHcCCh
Q 012360 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP 198 (465)
Q Consensus 167 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 198 (465)
.+.|.++++.++.+...+|..++.++...|+.
T Consensus 53 ~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~ 84 (97)
T 3ygs_P 53 RDQARQLIIDLETRGSQALPLFISCLEDTGQD 84 (97)
T ss_dssp HHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHcCcH
Confidence 34444444444444444555555554443443
No 320
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.07 E-value=53 Score=25.28 Aligned_cols=20 Identities=0% Similarity=-0.127 Sum_probs=11.7
Q ss_pred HHHHccCChHHHHHHhccCC
Q 012360 26 HFYGRMALFTDARVLFDKMP 45 (465)
Q Consensus 26 ~~~~~~~~~~~A~~~~~~~~ 45 (465)
...+..|+.+....+++.-.
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTT
T ss_pred HHHHHhccHHHHHHHHHcCC
Confidence 34455666777666666543
No 321
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.04 E-value=1.6e+02 Score=25.40 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=51.0
Q ss_pred chhHHHHHhccCCcchh--hhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 012360 4 GLHAHVTKTALDSDIYV--GNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81 (465)
Q Consensus 4 ~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 81 (465)
.+.+.+++.|..++... -.+.+...+..|+.+-+..+++.-...+...-.+.+...+..|+.+-+..+++.....|..
T Consensus 34 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 34 DEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCC
Confidence 45677888887766543 2456777788899988888888765443322223344456678887777777765554544
Q ss_pred Cc
Q 012360 82 AD 83 (465)
Q Consensus 82 ~~ 83 (465)
|+
T Consensus 114 ~~ 115 (364)
T 3ljn_A 114 PE 115 (364)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 322
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=36.00 E-value=6.1 Score=27.89 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=42.4
Q ss_pred HHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhH
Q 012360 28 YGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT 105 (465)
Q Consensus 28 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 105 (465)
|.+++++++++.+.++ ...|.-.|...+..++.+-|.++++...+.| +...|...+-.|...=+++-+++
T Consensus 16 ykkN~rw~qSI~L~Kk-----DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 16 PRGSHMWKQSVELAKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSSCCCCSSCCCCCSC-----CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred hhccccHHHHHHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3344555554433322 3345566666677788888888888777654 55667777766666655555443
No 323
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.62 E-value=73 Score=23.41 Aligned_cols=42 Identities=5% Similarity=-0.032 Sum_probs=19.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcch
Q 012360 55 LMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARL 97 (465)
Q Consensus 55 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 97 (465)
++..+...+ .-.|.++++.+.+.+...+..|....++.+...
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 334444444 445555555555544444444443334443333
No 324
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.56 E-value=1.7e+02 Score=23.14 Aligned_cols=67 Identities=12% Similarity=0.205 Sum_probs=42.6
Q ss_pred HHHHHHHHHHH---HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchh-----hHhHHHHHHHHHHcCCC
Q 012360 183 VLWRSMMHGCV---KAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN-----LQYGRLVHRFILQNNIT 249 (465)
Q Consensus 183 ~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 249 (465)
..+--+|+++. +-.+.+.|+-++-+|++.|-.|....-..++.+....|. ...|...++.....|.+
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33444566664 457899999999999999988776665666666554443 33444555555555543
No 325
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.37 E-value=1.3e+02 Score=21.90 Aligned_cols=60 Identities=7% Similarity=0.026 Sum_probs=33.0
Q ss_pred HHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 012360 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 208 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4455666554332 23333333444556777777776665555555555566666666543
No 326
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=34.29 E-value=50 Score=24.08 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=25.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchh
Q 012360 54 TLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE 98 (465)
Q Consensus 54 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 98 (465)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 345555555556667777777766554455555444444444444
No 327
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.58 E-value=93 Score=19.81 Aligned_cols=60 Identities=10% Similarity=0.020 Sum_probs=34.1
Q ss_pred HHHHcCCCCchhhHHHHHHHhcchh-hhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCC
Q 012360 74 QLIFEGIVADKITLVILFSACARLE-KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134 (465)
Q Consensus 74 ~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 134 (465)
.|.+.|+..+..- ..++..+...+ ..-.+.++.+.+.+.+...+..+....+..+...|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3555666655443 34555555544 455677777777666555555555555555555543
No 328
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=33.44 E-value=1.5e+02 Score=23.35 Aligned_cols=187 Identities=10% Similarity=-0.032 Sum_probs=0.0
Q ss_pred HHHHhcchhhhhhhhHHHHHHHHhCCccchhhHH--HHHHHHHhCCChHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCC
Q 012360 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMEN--ALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMEL 166 (465)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 166 (465)
.+...+..|+.+.+..+++.+.+.|..++..... ..+...+..|+.+-+..+++.- ........-.+.+...+..|+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Q ss_pred hHHHHHHHH-------HhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHhccchhhHhH
Q 012360 167 VDLAREVFD-------EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV---MVSVLSACSSLSNLQYG 236 (465)
Q Consensus 167 ~~~a~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a 236 (465)
.+-+..+++ .....+....+.+..+..... .++++.+.+.|..++... -...+...+..|+.+-+
T Consensus 92 ~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v 166 (241)
T 1k1a_A 92 PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-----QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166 (241)
T ss_dssp HHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC-----HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHH
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh
Q 012360 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV 283 (465)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 283 (465)
..+++. ...+......-.+.+...+..|+.+-+..+++....++.
T Consensus 167 ~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 167 QLLLQH--GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL 211 (241)
T ss_dssp HHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
No 329
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=32.48 E-value=1.2e+02 Score=20.55 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHhcch
Q 012360 68 VLILFKQLIFEGIVADKITLVILFSACARL 97 (465)
Q Consensus 68 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 97 (465)
|.++.+++...|+.|+......++..|...
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y 57 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQY 57 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 445555555555555555555555544433
No 330
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.44 E-value=63 Score=26.26 Aligned_cols=85 Identities=7% Similarity=-0.124 Sum_probs=49.4
Q ss_pred HHhcchhhhhhhhHHHHHHHHhCCccchh-------hHHHHHHHHH--hCCChHHHHHHHHhhC----------CC---C
Q 012360 92 SACARLEKLHYGKTVHCYATKVGLEYMLN-------MENALLLMYA--KCKEMDEALRLFDEMG----------SR---R 149 (465)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~g~~~~A~~~~~~~~----------~~---~ 149 (465)
...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-. .. .
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 34556788998888998888877655533 2234443332 5677777777776531 00 1
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHh
Q 012360 150 NIVSLNILINGYIDMELVDLAREVFDEI 177 (465)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (465)
|..-+ +.+...+..|+.+-+.-+++.-
T Consensus 90 d~~g~-t~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 90 YYRGQ-TALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp SEESB-CHHHHHHHTTCHHHHHHHHHTT
T ss_pred ccCCC-CHHHHHHHcCCHHHHHHHHhCC
Confidence 11112 2344455667777777666654
No 331
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=31.97 E-value=1.9e+02 Score=22.97 Aligned_cols=48 Identities=6% Similarity=0.117 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHCCCCCCH--HHH-----HHHHHHHHhcCCHHHHHHHHHHhhc
Q 012360 299 GNEALRVFYQMERKGIKPNE--ATF-----VSVLAACRHSGLITEGCQLFRRMGG 346 (465)
Q Consensus 299 ~~~a~~~~~~m~~~g~~p~~--~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (465)
.+.|+.+|+.+.+.-.-|+. ... ...+..|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 35666777766654211111 111 2344567888999999999998885
No 332
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.94 E-value=1.2e+02 Score=21.85 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=16.3
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHHcCCCCchhhHHHHHHHh
Q 012360 55 LMSIYNDFS-DSGEVLILFKQLIFEGIVADKITLVILFSAC 94 (465)
Q Consensus 55 l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 94 (465)
++..+...+ ..-.|.++++.+.+.+...+..|....++.+
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 63 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQF 63 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 333333333 3444555555554443333333333333333
No 333
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=30.76 E-value=2.9e+02 Score=24.55 Aligned_cols=279 Identities=12% Similarity=0.050 Sum_probs=155.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhc--------CChHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCHHHH---
Q 012360 153 SLNILINGYIDMELVDLAREVFDEIVD--------KDIVLWRSMMHGCVKAK-QPEEALELFKKMIDEGVTPDEEVM--- 220 (465)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~--- 220 (465)
+...+...|.+.|+.++..+++....+ +.......++..+.... ..+.-.++..+..+..-. ...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456678899999999999999987732 24455677788776643 344444444444432111 11223
Q ss_pred ---HHHHHHhccchhhHhHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhcCC------CCChhhH
Q 012360 221 ---VSVLSACSSLSNLQYGRLVHRFILQNNITQD-----AFVKTALIDMYSKCGSLEEALVTFYKTD------CKDVVTW 286 (465)
Q Consensus 221 ---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~ 286 (465)
.-+...|...|++.+|..++..+.+.--..| ..++..-++.|...+++.++...+.... .+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2567788899999999999888876421211 2345666778888999999888885542 1233222
Q ss_pred H----HHHHHHH-HcCChHHHHHHHHHHHHC-C-C-CCC---HHHHHHHHHHHHhcCCHHHHHHHHH-HhhcCCCCCCCh
Q 012360 287 T----TMIEGLA-NYGLGNEALRVFYQMERK-G-I-KPN---EATFVSVLAACRHSGLITEGCQLFR-RMGGVYRVQPTI 354 (465)
Q Consensus 287 ~----~l~~~~~-~~~~~~~a~~~~~~m~~~-g-~-~p~---~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 354 (465)
. .-...+. ..+++..|...|-+..+. . . .|. ...|..+... -.++..+...++. .....+ ..|..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL--l~~~r~el~~~l~~~~~~~~-~~pei 256 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI--MLGQSDDVNQLVSGKLAITY-SGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCGGGHHHHHHSHHHHTT-CSHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH--HcCCHHHHHHHhcccccccc-CCccH
Confidence 1 1233456 688999998887765431 0 0 111 1123222222 2233333323222 211111 24555
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHH------hCCCCchhHHHH
Q 012360 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMK------LGNQSHEAYVLL 426 (465)
Q Consensus 355 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~l 426 (465)
..+..++.+| ..+++.+...+++.... ..|+.. ..-+ ..+++++++ ..|-....+..+
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l-~~h~------------~~L~~~Ir~~~L~~i~~pYsrIsl~~i 322 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIV-QAHL------------GTLYDTMLEQNLCRIIEPYSRVQVAHV 322 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHH-HHHH------------HHHHHHHHHHHHHHHHTTCSEEEHHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHH-HHHH------------HHHHHHHHHHHHHHHhHhhceeeHHHH
Confidence 5566666654 45677777777766543 122221 1101 111112111 236555567777
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 427 SNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 427 ~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
+..+.- ..++++..+-+|...|.
T Consensus 323 A~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 323 AESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHCc--CHHHHHHHHHHHHHCCC
Confidence 777754 67888888888876554
No 334
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.31 E-value=1.3e+02 Score=22.03 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=37.7
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCH
Q 012360 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370 (465)
Q Consensus 307 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 370 (465)
+.+.+.|++++..-. .++..+...+ .-.|.++++.+.+. +...+..|...-++.+...|-.
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKT-ASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCCcE
Confidence 345667777765432 3344444445 66788888888765 4445666666666777776643
No 335
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=30.10 E-value=2.3e+02 Score=23.20 Aligned_cols=111 Identities=9% Similarity=-0.063 Sum_probs=47.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012360 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYG-LGNEALRVFYQMERKGIKPNEATFVSVLAAC 328 (465)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 328 (465)
++..+-...+.++...|+.+....+...+..++...-...+.++...+ ....+...+..+.. .++...-...+.++
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGL 216 (280)
T ss_dssp SCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 444444445555555444322222222233344443333444444433 22344444444432 34555555666666
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCH
Q 012360 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 370 (465)
...|+....-.+...+. . ++ .....+.++.+.|..
T Consensus 217 ~~~~~~~~~~~L~~~l~-d----~~--vr~~a~~aL~~i~~~ 251 (280)
T 1oyz_A 217 SYRKDKRVLSVLCDELK-K----NT--VYDDIIEAAGELGDK 251 (280)
T ss_dssp HHTTCGGGHHHHHHHHT-S----SS--CCHHHHHHHHHHCCG
T ss_pred HHhCCHhhHHHHHHHhc-C----cc--HHHHHHHHHHhcCch
Confidence 66665443333333332 2 22 223345556666653
No 336
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.84 E-value=2.1e+02 Score=22.75 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=15.2
Q ss_pred HHHHHHhCCChHHHHHHHHhh
Q 012360 125 LLLMYAKCKEMDEALRLFDEM 145 (465)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~ 145 (465)
.+..|.+.|.+++|.+++++.
T Consensus 120 AV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHH
Confidence 445667777777777777776
No 337
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.61 E-value=1.7e+02 Score=22.06 Aligned_cols=54 Identities=17% Similarity=-0.072 Sum_probs=37.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHhhc
Q 012360 293 LANYGLGNEALRVFYQMERKGIKP--NEATFVSVLA-A-----CRHSGLITEGCQLFRRMGG 346 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 346 (465)
+...|++=+|.++|+..-...-.+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345588888888888886654444 4456666666 2 3457888888888888764
No 338
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=29.53 E-value=87 Score=25.67 Aligned_cols=21 Identities=19% Similarity=-0.032 Sum_probs=12.1
Q ss_pred HHhcCChhHHHHHHHHHHHcC
Q 012360 59 YNDFSDSGEVLILFKQLIFEG 79 (465)
Q Consensus 59 ~~~~~~~~~a~~~~~~m~~~~ 79 (465)
.++.|+.+....+++.....+
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHHHhhcc
Confidence 345566666666666555444
No 339
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.38 E-value=1.5e+02 Score=22.27 Aligned_cols=69 Identities=13% Similarity=0.091 Sum_probs=44.2
Q ss_pred hHHHHHHHH-HHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCH
Q 012360 199 EEALELFKK-MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN--NITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 199 ~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
+.+++-+.+ +.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444444 445677765443 34555566666777888888888877 6666666666677777777743
No 340
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.80 E-value=1.8e+02 Score=21.36 Aligned_cols=59 Identities=10% Similarity=0.047 Sum_probs=30.3
Q ss_pred HHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 012360 208 MIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267 (465)
Q Consensus 208 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (465)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 4445555443322 2333333344455666777776666555555555556666666554
No 341
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=27.74 E-value=3.2e+02 Score=24.17 Aligned_cols=332 Identities=12% Similarity=0.121 Sum_probs=153.7
Q ss_pred HHHhcchhhhhhhhHHHHHHHHhCCccchhh--HHHHHHHHHhCCChHHHHHHHHhhCCCCCch--hHHHHHHHHHhcCC
Q 012360 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNM--ENALLLMYAKCKEMDEALRLFDEMGSRRNIV--SLNILINGYIDMEL 166 (465)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 166 (465)
+...+..|+.+-+ +.+.+.|..++... ....+...+..|+.+-+..+++.- ..++.. .-.+.+...+..|+
T Consensus 18 L~~Aa~~g~~~~v----~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~ 92 (437)
T 1n11_A 18 LHVASFMGHLPIV----KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK-AKVNAKAKDDQTPLHCAARIGH 92 (437)
T ss_dssp HHHHHHHTCHHHH----HHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHCCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHCCC
Confidence 3444556666544 44455565554321 123445556678888777776653 222221 11234555567788
Q ss_pred hHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHhccchhhHhHHHHH
Q 012360 167 VDLAREVFDEIVDKD---IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD---EEVMVSVLSACSSLSNLQYGRLVH 240 (465)
Q Consensus 167 ~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~ 240 (465)
.+-+.-+++.-..++ ....+. +...+..|+.+-+..+++ .+..++ ....+. +...+..|+.+ +.
T Consensus 93 ~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~-L~~A~~~g~~~----~v 162 (437)
T 1n11_A 93 TNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALLE----KEASQACMTKKGFTP-LHVAAKYGKVR----VA 162 (437)
T ss_dssp HHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCH-HHHHHHTTCHH----HH
T ss_pred HHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCH-HHHHHHcCCHH----HH
Confidence 877777776653332 222222 333456677765555543 333221 111222 23334455554 44
Q ss_pred HHHHHcCCCCChhH--HHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012360 241 RFILQNNITQDAFV--KTALIDMYSKCGSLEEALVTFYKTDCKDV---VTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315 (465)
Q Consensus 241 ~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 315 (465)
+.+.+.|..++... -.+.+...+..|+.+-+.-+++....++. ..++.+ ...+..|+.+-+ +.+.+.|..
T Consensus 163 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~----~~Ll~~g~~ 237 (437)
T 1n11_A 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEVA----RSLLQYGGS 237 (437)
T ss_dssp HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHHH----HHHHHTTCC
T ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHH----HHHHHcCCC
Confidence 44555554433211 11234555677888777777766554332 222333 334556665544 344455554
Q ss_pred CCHH---HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccc
Q 012360 316 PNEA---TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT---IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFI 387 (465)
Q Consensus 316 p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 387 (465)
++.. ..+ .+...+..|..+-+.-+++. +..++ ....+.| ...+..|+.+-+..+++.-.. ..+..
T Consensus 238 ~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~-----~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 310 (437)
T 1n11_A 238 ANAESVQGVT-PLHLAAQEGHAEMVALLLSK-----QANGNLGNKSGLTPL-HLVAQEGHVPVADVLIKHGVMVDATTRM 310 (437)
T ss_dssp TTCCCTTCCC-HHHHHHHTTCHHHHHHHHTT-----TCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHHTCCTTCCCSS
T ss_pred CCCCCCCCCC-HHHHHHHCCCHHHHHHHHhc-----CCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhCCccCCCCCCC
Confidence 4322 222 33344456666555444432 22222 2222222 334467777766666664221 11222
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCCCC
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKP 455 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 455 (465)
-...|. ..+..|+.+-+.-+++.-...+..+..-...|-.+ .+.|+.+ +.+.+.+.|..++.
T Consensus 311 g~t~L~-~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A-~~~g~~~----iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 311 GYTPLH-VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA-AQQGHTD----IVTLLLKNGASPNE 372 (437)
T ss_dssp CCCHHH-HHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHH----HHHHHHHTTCCSCC
T ss_pred CCCHHH-HHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHCChHH----HHHHHHHCcCCCCC
Confidence 222333 33456776654444433222221121112223222 3456544 44444456665543
No 342
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.44 E-value=2.2e+02 Score=22.21 Aligned_cols=112 Identities=12% Similarity=-0.040 Sum_probs=54.4
Q ss_pred HHHHHHHccCChHHHHHHhccCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh---hHHHHHHHhc
Q 012360 23 SLIHFYGRMALFTDARVLFDKMP----FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKI---TLVILFSACA 95 (465)
Q Consensus 23 ~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~l~~~~~ 95 (465)
..+...++.|+++....+++.-. .++..-++.|.. .+..|+.+ +++.+.+.|..++.. -++.+ ...+
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~ 81 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW-ACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPL-HIAA 81 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHH-HHHH
T ss_pred chHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHH-HHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHH-HHHH
Confidence 34666777888888888887543 223333344333 34556654 444455555444322 12222 2223
Q ss_pred chhhhhhhhHHHHHHHHhCCccchhh--HHHHHHHHHhCCChHHHHHHHHh
Q 012360 96 RLEKLHYGKTVHCYATKVGLEYMLNM--ENALLLMYAKCKEMDEALRLFDE 144 (465)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~ 144 (465)
..|+. ++++.+.+.|..++... ....+...+..|+.+-+..+++.
T Consensus 82 ~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 82 SAGXD----EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128 (231)
T ss_dssp HHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HcCHH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 34443 34445555554443211 11233344455666655555443
No 343
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=27.35 E-value=2e+02 Score=21.70 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHcCCCCchh-hHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchh
Q 012360 66 GEVLILFKQLIFEGIVADKI-TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120 (465)
Q Consensus 66 ~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 120 (465)
+.+.++|..|...|+--... .|......+-..|++..|.++|..-++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 34666777777776654443 34444455556677777777777777766555443
No 344
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=26.66 E-value=1.2e+02 Score=23.06 Aligned_cols=50 Identities=10% Similarity=-0.023 Sum_probs=29.4
Q ss_pred hHHHHHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHH
Q 012360 22 NSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILF 72 (465)
Q Consensus 22 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 72 (465)
.+.+...++.|+.+-+..+++.-..+ +...++.+. ..+..|+.+-+..++
T Consensus 40 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 40 NTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYL-YAGAQGRTEILAYML 92 (201)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHH
Confidence 34566777889988888888764433 222333333 345567765544444
No 345
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.65 E-value=88 Score=20.83 Aligned_cols=24 Identities=0% Similarity=-0.015 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 012360 389 YKALLSACITYSEFDLGKKVANNM 412 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~ 412 (465)
+......+.+.|+|++|++..+++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 344555666777777777776654
No 346
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.47 E-value=1.3e+02 Score=21.50 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=21.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 012360 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 332 (465)
..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333444445555566666555544444445444455554444
No 347
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.93 E-value=2e+02 Score=21.59 Aligned_cols=52 Identities=10% Similarity=-0.051 Sum_probs=33.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCC--chhhHHHHHH-Hh-----cchhhhhhhhHHHHHHHH
Q 012360 61 DFSDSGEVLILFKQLIFEGIVA--DKITLVILFS-AC-----ARLEKLHYGKTVHCYATK 112 (465)
Q Consensus 61 ~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~-~~-----~~~~~~~~a~~~~~~~~~ 112 (465)
..|++-+|-++|+..-...-.+ +...|..+|+ .. .+.|+...|..++.....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488888888888886654344 4455666666 22 245777777777776654
No 348
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=24.91 E-value=1.3e+02 Score=18.56 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
.++.++..++...-.++++..++++.+.|.-+...|..-.+.+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 46677788877777899999999999999877777877777766543
No 349
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.76 E-value=2.5e+02 Score=22.00 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=30.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 012360 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 333 (465)
.+..+++.|+-++-+|.+.| .|....-..++.+....|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 45689999999999999999 7766666666677766664
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.58 E-value=5.7e+02 Score=25.98 Aligned_cols=108 Identities=10% Similarity=-0.017 Sum_probs=67.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--------------------C-
Q 012360 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT--------------------P- 215 (465)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------------------~- 215 (465)
++..+...|..+-|.++..-+. .+...--.+..+|...|++++|...|++... |+. +
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~e~~ 893 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQ 893 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHTTTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCccccc
Confidence 5566666777766655444333 3444444566777777888888877765431 111 0
Q ss_pred --CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcC
Q 012360 216 --DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA----FVKTALIDMYSKCG 266 (465)
Q Consensus 216 --~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 266 (465)
...-|..++..+-+.+.++.+.++-+..++.--..+. ..+..+.++.+..|
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1235788888889999999998888888764322232 35666777666544
No 351
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=23.84 E-value=1.8e+02 Score=23.85 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=6.8
Q ss_pred HhcCChHHHHHHHH
Q 012360 162 IDMELVDLAREVFD 175 (465)
Q Consensus 162 ~~~~~~~~a~~~~~ 175 (465)
+..|+.+-+.-+++
T Consensus 224 ~~~g~~~iv~~Ll~ 237 (276)
T 4hbd_A 224 CEHGHKEIAGLLLA 237 (276)
T ss_dssp HHHTCHHHHHHHHT
T ss_pred HHCCCHHHHHHHHh
Confidence 44455555444444
No 352
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=23.42 E-value=1.5e+02 Score=18.79 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=19.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 392 LLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
++..+...|++++|...|-+++..-|....
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 555666667777777766666666655544
No 353
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.11 E-value=5.1e+02 Score=24.94 Aligned_cols=336 Identities=8% Similarity=-0.040 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHH-----hCCccchhhHHHHHHH
Q 012360 54 TLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK-----VGLEYMLNMENALLLM 128 (465)
Q Consensus 54 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~ 128 (465)
.+|-.|.+.|++++|.++.++.... +.--...|...+..++...+-.--.++-.++.. ....++...|-..+-.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 235 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVYK 235 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC------------------------------CHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q ss_pred HHhCCChHHHHHHHHhh-CCCCCchhHHHHHHHHHhcC-----------ChHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 012360 129 YAKCKEMDEALRLFDEM-GSRRNIVSLNILINGYIDME-----------LVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196 (465)
Q Consensus 129 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 196 (465)
..-.-+.. -... .+..+..-|--+=-.+.+.+ -+++..+.+.+.-+.--.. .....+.-.|
T Consensus 236 Iig~cD~~-----~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~--lYf~vLlLtg 308 (661)
T 2qx5_A 236 LIGRCDLS-----RKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN--YYLQTLLLSG 308 (661)
T ss_dssp HHHTCCGG-----GCCCGGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT--CHHHHHHHTT
T ss_pred HHhccccc-----ccchHHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh--HHHHHHHHHh
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh---cCCHHHHHH
Q 012360 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK---CGSLEEALV 273 (465)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~ 273 (465)
+++.|.+++-.. ...+..++...+.-+.-.+- -+.+..........-+..|+..|.+ ..+..+|.+
T Consensus 309 qFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al~ 377 (661)
T 2qx5_A 309 LYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAVE 377 (661)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTTCHHHHHH
T ss_pred hHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHHH
Q ss_pred HHhcCCCCC-----hhhHHHHHHHHHHcCChHHHH-----------HHHHHHHHCCCCCCH------HHHHHHHHHHHhc
Q 012360 274 TFYKTDCKD-----VVTWTTMIEGLANYGLGNEAL-----------RVFYQMERKGIKPNE------ATFVSVLAACRHS 331 (465)
Q Consensus 274 ~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~-----------~~~~~m~~~g~~p~~------~~~~~l~~~~~~~ 331 (465)
+|--+.-.+ ...+..+-......++++.-. .++++-... +..+. ........-+...
T Consensus 378 Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~l-i~l~d~~~~~~~i~~~aA~~ae~~ 456 (661)
T 2qx5_A 378 YLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPL-LHVRDEKEFLHTITEQAARRADED 456 (661)
T ss_dssp HHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGG-GTCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcc-cccccHHHHHHHHHHHHHHHHHHC
Q ss_pred CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCC----------------HHHHHHHHHhCCCCCc----------
Q 012360 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL----------------LYQAEEFIKIMPAEDK---------- 385 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------~~~A~~~~~~~~~~~~---------- 385 (465)
|++++|+.+|.-+. ....-..+.+.++.-....-. ...|.++.+.....+.
T Consensus 457 G~~~dAi~LY~La~---~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~ 533 (661)
T 2qx5_A 457 GRIYDSILLYQLAE---EYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKNK 533 (661)
T ss_dssp TCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHH
T ss_pred CCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHHHH
Q ss_pred --cchHHHHHHHH--HhcCChHHHHHHHHHH
Q 012360 386 --FISYKALLSAC--ITYSEFDLGKKVANNM 412 (465)
Q Consensus 386 --~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 412 (465)
-.....++..+ ...|+++.|++.+++.
T Consensus 534 ~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 534 EICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 354
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=23.08 E-value=3.8e+02 Score=23.39 Aligned_cols=26 Identities=8% Similarity=0.256 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhhCC
Q 012360 122 ENALLLMYAKCKEMDEALRLFDEMGS 147 (465)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 147 (465)
...++.-|...|+.++|...+++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 46778888889999999999999863
No 355
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.80 E-value=2.3e+02 Score=20.80 Aligned_cols=62 Identities=6% Similarity=0.097 Sum_probs=41.8
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhccch-hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 012360 206 KKMIDEGVTPDEEVMVSVLSACSSLS-NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345667877765543 3444555555 6778999999998877666776666667777776643
No 356
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.43 E-value=58 Score=19.58 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHhhcCCCCCCC
Q 012360 333 LITEGCQLFRRMGGVYRVQPT 353 (465)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~ 353 (465)
|++.|...|.++.....++|+
T Consensus 35 d~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp CHHHHHHHHHHHHHTTCSCGG
T ss_pred CHHHHHHHHHHHHHcCCCCHH
Confidence 566666666666544344444
No 357
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=22.39 E-value=2.4e+02 Score=20.87 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (465)
.+..+.......|-.++...-+..+... .+...+..++..|..
T Consensus 9 ~~~~~~~~l~~~g~LD~~f~qL~~L~~~----~~~~~~~ell~~Fl~ 51 (153)
T 3us6_A 9 QWVDYIKSMFMEGFLDGQFLQLQQLQDE----NNPEFVFEVVSLFFD 51 (153)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHTCBT----TBTTHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchHHHHHHHHHhhcC----CCHHHHHHHHHHHHH
Confidence 3556677778888888666666666532 345566777777764
No 358
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.28 E-value=2.2e+02 Score=20.40 Aligned_cols=60 Identities=8% Similarity=0.086 Sum_probs=37.4
Q ss_pred HHHHcCCCCCHHHHHHHHHHhccch-hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 012360 207 KMIDEGVTPDEEVMVSVLSACSSLS-NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267 (465)
Q Consensus 207 ~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (465)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 35566777665443 3344444455 567788888888887666666666656666666554
No 359
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=22.01 E-value=1.8e+02 Score=28.08 Aligned_cols=65 Identities=15% Similarity=0.093 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHH
Q 012360 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438 (465)
Q Consensus 371 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 438 (465)
+.|.++.+.|.. ........+.....|++..|.++.+.++..+|++..+...++.+|.+.|.-.+
T Consensus 437 ~~a~~~v~~~gg---~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 437 DSAGRYVEYMGG---AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 345555555542 22233344555678999999999999999999999999999999998875444
No 360
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=21.97 E-value=1.6e+02 Score=18.82 Aligned_cols=38 Identities=11% Similarity=0.282 Sum_probs=24.5
Q ss_pred HHhccCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 012360 39 VLFDKMP--FRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76 (465)
Q Consensus 39 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 76 (465)
.++.+++ .|++.||+-+.+.+-+..-..++..+.+++.
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4566665 5688888887776665555566666655543
No 361
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.56 E-value=1.2e+02 Score=22.03 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=17.8
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCC
Q 012360 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL 369 (465)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 369 (465)
..+...+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHK-GDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCC
Confidence 3333333344444444444432 223334444444444444443
No 362
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.25 E-value=3e+02 Score=21.54 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=30.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 012360 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 333 (465)
.+..+++.|+-++-+|++.|-.|....-..++.+....|.
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 4567899999999999999877776666666666665553
No 363
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.23 E-value=1.2e+02 Score=21.88 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=8.1
Q ss_pred HHHcCChhHHHHHHHH
Q 012360 192 CVKAKQPEEALELFKK 207 (465)
Q Consensus 192 ~~~~g~~~~a~~~~~~ 207 (465)
.+..|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3445555555555544
No 364
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.11 E-value=2.8e+02 Score=21.58 Aligned_cols=165 Identities=12% Similarity=0.036 Sum_probs=89.4
Q ss_pred chhHHHHHh-ccCCcch--hhhHHHHHHHccCChHHHHHHhccCCCC--------CcccHHHHHHHHHhcCChhHHHHHH
Q 012360 4 GLHAHVTKT-ALDSDIY--VGNSLIHFYGRMALFTDARVLFDKMPFR--------DVGSWNTLMSIYNDFSDSGEVLILF 72 (465)
Q Consensus 4 ~~~~~~~~~-g~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~ 72 (465)
.+.+.+++. |..++.. .-.+.+...+..|+.+-+..+++.-... +..-++.|. ..+..|+.+ ++
T Consensus 17 ~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v 91 (232)
T 2rfa_A 17 QALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH-IAVINQNVN----LV 91 (232)
T ss_dssp HHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH-HHHHTTCHH----HH
T ss_pred HHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH-HHHHcCCHH----HH
Confidence 345666665 7665543 3345677778889999888888764321 223333443 345567754 44
Q ss_pred HHHHHcCCCCchh----------------hHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhh--HHHHHHHHHhCCC
Q 012360 73 KQLIFEGIVADKI----------------TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM--ENALLLMYAKCKE 134 (465)
Q Consensus 73 ~~m~~~~~~~~~~----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~ 134 (465)
+.+.+.|..++.. -.+ .+...+..|+. ++.+.+.+.|..++... -.+.+...+..|+
T Consensus 92 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~----~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~ 166 (232)
T 2rfa_A 92 RALLARGASVSARATGSVFHYRPHNLIYYGEH-PLSFAACVGSE----EIVRLLIEHGADIRAQDSLGNTVLHILILQPN 166 (232)
T ss_dssp HHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSS-HHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSC
T ss_pred HHHHhCCCCCCcccCCcceeecccccccCCCC-HHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 4455556544432 122 23333445554 44555556665554321 1234555667788
Q ss_pred hHHHHHHHHhh---CCCC---------CchhHHHHHHHHHhcCChHHHHHHHHHhhc
Q 012360 135 MDEALRLFDEM---GSRR---------NIVSLNILINGYIDMELVDLAREVFDEIVD 179 (465)
Q Consensus 135 ~~~A~~~~~~~---~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 179 (465)
.+-+..+++.+ +..+ |..-. +-+...++.|+.+-+.-+++.-..
T Consensus 167 ~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~-tpl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 167 KTFACQMYNLLLSYDGGDHLKSLELVPNNQGL-TPFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSC-CHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCchhhhhhhccCCCCCC-CHHHHHHHcCCHHHHHHHHhcCcc
Confidence 88775544444 3222 22222 335555677888877777766533
Done!