Query 012361
Match_columns 465
No_of_seqs 122 out of 137
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 07:57:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012361.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012361hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k04a_ a.24.14.1 (A:) FAT dom 32.1 54 0.0039 27.0 6.9 71 81-152 14-94 (142)
2 d1ls1a1 a.24.13.1 (A:1-88) Sig 29.9 15 0.0011 27.9 2.9 37 134-170 2-38 (88)
3 d1t72a_ a.7.12.1 (A:) Phosphat 29.3 42 0.0031 28.1 6.1 37 79-115 4-40 (215)
4 d1iyca_ g.31.1.2 (A:) Antifung 14.2 37 0.0027 21.0 1.6 17 314-338 15-31 (36)
5 d1gs9a_ a.24.1.1 (A:) Apolipop 12.6 1.6E+02 0.011 23.1 5.7 28 137-164 90-117 (144)
6 d1wgwa_ a.24.13.1 (A:) Signal 12.4 1E+02 0.0075 23.3 4.3 34 137-170 10-43 (99)
7 d1e52a_ a.2.9.1 (A:) C-termina 11.1 1.7E+02 0.012 19.9 4.7 41 126-169 11-51 (56)
8 d1sumb_ a.7.12.1 (B:) PhoU hom 9.7 2.2E+02 0.016 23.5 6.0 35 81-115 1-35 (225)
9 d1dx5i2 g.3.11.1 (I:388-422) T 9.4 40 0.0029 21.2 0.5 20 301-322 8-27 (35)
10 d1xwma_ a.7.12.1 (A:) Phosphat 9.3 2.9E+02 0.021 22.2 6.6 32 84-115 2-33 (212)
No 1
>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.12 E-value=54 Score=26.99 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=45.7
Q ss_pred cchhhhhhhhhhhHH--------hccchHHHHHHHHHHHHHHhhhhhccccc--ccCchhhhhHHHHHHHHHHHHHHHHH
Q 012361 81 QDEFHGEAMHTLKYV--------VNQSDYTVKTLRNVTEYLSLAKTINVAQV--FLPSAVMDDIDKLNRDLSTAANTLAD 150 (465)
Q Consensus 81 q~kfh~~~~~t~~~V--------v~qad~tv~~lrnvt~~L~~ak~~~v~~~--~lP~~~~~~id~l~~~Lns~A~~i~~ 150 (465)
+|+.++.++.+++-| -.+.++-+.-+++|...|.+--+. ++++ .+|...+..|+-..+-||+...++.+
T Consensus 14 ~D~Vy~~t~~VVkaV~~ls~~v~~~~~~~Y~~lVK~VG~~Lr~Ll~s-vD~~~~~lp~~~~~eIema~klLskDm~eLi~ 92 (142)
T d1k04a_ 14 NDKVYENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLALRTLLAT-VDETIPLLPASTHREIEMAQKLLNSDLGELIN 92 (142)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHH-HHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHH-HHHHhccCcHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555433 124566677778887777654322 3332 38888899999988888888888765
Q ss_pred Hh
Q 012361 151 KT 152 (465)
Q Consensus 151 k~ 152 (465)
+.
T Consensus 93 ~M 94 (142)
T d1k04a_ 93 KM 94 (142)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 2
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=29.94 E-value=15 Score=27.88 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 012361 134 IDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSAL 170 (465)
Q Consensus 134 id~l~~~Lns~A~~i~~k~~~n~~~I~~~l~~v~~~l 170 (465)
+++|.+++.++...+..+..=+-+.|+++++.+|.+|
T Consensus 2 F~~L~~~l~~a~~~l~g~~~i~E~~i~~~l~eir~AL 38 (88)
T d1ls1a1 2 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRAL 38 (88)
T ss_dssp CHHHHHHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 3556666666666666655555566777777776654
No 3
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=29.34 E-value=42 Score=28.07 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=30.6
Q ss_pred cccchhhhhhhhhhhHHhccchHHHHHHHHHHHHHHh
Q 012361 79 VGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSL 115 (465)
Q Consensus 79 ~Gq~kfh~~~~~t~~~Vv~qad~tv~~lrnvt~~L~~ 115 (465)
.|.-|||++..+..+.+.+=++.+..+++...+.|..
T Consensus 4 ~~~~~~~~~L~~l~~~l~~M~~~v~~~l~~~~~al~~ 40 (215)
T d1t72a_ 4 GGGMKLFKELEETKEQVIKMAKLVQEAIDKATEALNK 40 (215)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999998888888888888888887777664
No 4
>d1iyca_ g.31.1.2 (A:) Antifungal peptide scarabaecin {Beetle (Oryctes rhinoceros) [TaxId: 72550]}
Probab=14.19 E-value=37 Score=21.04 Aligned_cols=17 Identities=24% Similarity=0.819 Sum_probs=14.4
Q ss_pred cccCCCccccccchhhccccceeec
Q 012361 314 DRQCGSYEVSIANASKVWQNYTCEL 338 (465)
Q Consensus 314 ~~~C~~gev~i~na~~v~~~~~C~~ 338 (465)
..+||.|. ||..|-|..
T Consensus 15 rsncpkgk--------vwngfdcks 31 (36)
T d1iyca_ 15 RSNCPKGK--------VWNGFDCKS 31 (36)
T ss_dssp TSCCCSSC--------EEETTEEEC
T ss_pred ccCCCCcc--------eecCccccC
Confidence 46899997 999999975
No 5
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=12.56 E-value=1.6e+02 Score=23.13 Aligned_cols=28 Identities=7% Similarity=0.134 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 012361 137 LNRDLSTAANTLADKTSENSAKIRKVFN 164 (465)
Q Consensus 137 l~~~Lns~A~~i~~k~~~n~~~I~~~l~ 164 (465)
+..+|...++++..+...|...+|.-+.
T Consensus 90 ~r~kl~~~~eel~~~~~~~~ee~r~~l~ 117 (144)
T d1gs9a_ 90 VRGRLVQYRGEVQAMLGQSTEELRVRLA 117 (144)
T ss_dssp HHHHHHHHHHHHHTSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555556555555444
No 6
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.45 E-value=1e+02 Score=23.32 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 012361 137 LNRDLSTAANTLADKTSENSAKIRKVFNAVRSAL 170 (465)
Q Consensus 137 l~~~Lns~A~~i~~k~~~n~~~I~~~l~~v~~~l 170 (465)
|..+|+++...+..+..-+-+.|+..++.++.+|
T Consensus 10 L~~~i~~a~~~l~~~~~i~E~~I~~~l~eI~~AL 43 (99)
T d1wgwa_ 10 LGRKITSALRSLSNATIINEEVLNAMLKEVCTAL 43 (99)
T ss_dssp HHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 4556666666666665555566777777777654
No 7
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=11.07 E-value=1.7e+02 Score=19.93 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=28.2
Q ss_pred cCchhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 012361 126 LPSAVMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSA 169 (465)
Q Consensus 126 lP~~~~~~id~l~~~Lns~A~~i~~k~~~n~~~I~~~l~~v~~~ 169 (465)
-|.+....|+.++.++..+|..+. .+.+.+||+-+..++-.
T Consensus 11 s~~el~k~i~~Le~~M~~aa~~l~---FE~AA~~RD~I~~l~~~ 51 (56)
T d1e52a_ 11 SPKALQQKIHELEGLMMQHAQNLE---FEEAAQIRDQLHQLREL 51 (56)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTC---HHHHTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHH
Confidence 455667889999999999998873 33355566665555544
No 8
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=9.73 E-value=2.2e+02 Score=23.52 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=26.6
Q ss_pred cchhhhhhhhhhhHHhccchHHHHHHHHHHHHHHh
Q 012361 81 QDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSL 115 (465)
Q Consensus 81 q~kfh~~~~~t~~~Vv~qad~tv~~lrnvt~~L~~ 115 (465)
|..|+.+.++..+.|.+=++.+.+++++...++..
T Consensus 1 ~r~~~~~l~~l~~~i~~M~~~v~~~l~~a~~al~~ 35 (225)
T d1sumb_ 1 NRLLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVE 35 (225)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677888888888888888888888877776654
No 9
>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.45 E-value=40 Score=21.21 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCcccccCCCccc
Q 012361 301 MPPLCYPYDSQLQDRQCGSYEV 322 (465)
Q Consensus 301 ~p~lCnPf~~~~~~~~C~~gev 322 (465)
-|-.|+|..+. +-+||.|-+
T Consensus 8 CPAdCdP~~p~--~C~CPeGyI 27 (35)
T d1dx5i2 8 CPADCDPNTQA--SCECPEGYI 27 (35)
T ss_dssp EECEECTTSTT--CEECCTTEE
T ss_pred CCCccCCCCCC--cccCCCceE
Confidence 35689998877 478888853
No 10
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.27 E-value=2.9e+02 Score=22.22 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=22.5
Q ss_pred hhhhhhhhhhHHhccchHHHHHHHHHHHHHHh
Q 012361 84 FHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSL 115 (465)
Q Consensus 84 fh~~~~~t~~~Vv~qad~tv~~lrnvt~~L~~ 115 (465)
|+++..+..+.+.+=++.+...+.+..+.+..
T Consensus 2 f~~~L~~l~~~i~~M~~~v~~~l~~a~~al~~ 33 (212)
T d1xwma_ 2 FADDLASLHNKLIEMGRLTEVALQQAIEAFQT 33 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777777777777777777777776666553
Done!